Query 011057
Match_columns 494
No_of_seqs 302 out of 2822
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 19:54:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011057.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011057hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hbx_A GAD 1, glutamate decarb 100.0 9.9E-62 3.4E-66 504.7 49.0 492 1-494 1-502 (502)
2 2dgk_A GAD-beta, GADB, glutama 100.0 1.8E-51 6.1E-56 423.2 47.3 433 16-449 2-439 (452)
3 3k40_A Aromatic-L-amino-acid d 100.0 4.5E-48 1.5E-52 399.3 40.3 414 14-446 29-473 (475)
4 4e1o_A HDC, histidine decarbox 100.0 7.8E-48 2.7E-52 398.5 39.3 414 14-445 34-479 (481)
5 3vp6_A Glutamate decarboxylase 100.0 3.2E-45 1.1E-49 381.2 41.3 413 14-445 49-506 (511)
6 1js3_A DDC;, DOPA decarboxylas 100.0 1.3E-44 4.5E-49 375.5 36.6 415 14-446 29-476 (486)
7 2okj_A Glutamate decarboxylase 100.0 2.2E-43 7.6E-48 367.7 40.4 411 14-443 46-501 (504)
8 2jis_A Cysteine sulfinic acid 100.0 5.7E-42 1.9E-46 357.9 40.2 408 14-442 65-513 (515)
9 2qma_A Diaminobutyrate-pyruvat 100.0 1.2E-41 4E-46 354.1 39.0 407 16-444 57-496 (497)
10 3mc6_A Sphingosine-1-phosphate 100.0 1.6E-40 5.5E-45 345.8 38.7 393 30-448 36-441 (497)
11 3f9t_A TDC, L-tyrosine decarbo 100.0 1.8E-37 6.2E-42 312.6 43.0 383 31-442 4-396 (397)
12 3mad_A Sphingosine-1-phosphate 100.0 1.3E-37 4.5E-42 325.0 40.7 393 30-448 69-473 (514)
13 2z67_A O-phosphoseryl-tRNA(SEC 100.0 1.7E-35 5.8E-40 304.2 24.7 372 24-441 50-455 (456)
14 1wyu_B Glycine dehydrogenase s 100.0 1.1E-33 3.7E-38 292.2 35.4 406 30-494 40-468 (474)
15 4hvk_A Probable cysteine desul 100.0 5.4E-31 1.9E-35 263.8 36.3 342 66-447 10-376 (382)
16 4eb5_A Probable cysteine desul 100.0 1.9E-30 6.5E-35 260.2 35.0 342 66-447 10-376 (382)
17 3nnk_A Ureidoglycine-glyoxylat 100.0 1.6E-30 5.4E-35 263.5 31.0 335 67-445 23-391 (411)
18 3bc8_A O-phosphoseryl-tRNA(SEC 100.0 1.1E-30 3.6E-35 261.6 28.7 380 25-446 16-445 (450)
19 2dr1_A PH1308 protein, 386AA l 100.0 7.6E-30 2.6E-34 256.2 33.4 337 65-445 28-380 (386)
20 3isl_A Purine catabolism prote 100.0 3.6E-30 1.2E-34 261.3 30.1 316 90-445 39-391 (416)
21 1eg5_A Aminotransferase; PLP-d 100.0 7E-29 2.4E-33 248.8 38.2 342 66-447 11-379 (384)
22 2yrr_A Aminotransferase, class 100.0 3E-30 1E-34 255.6 27.6 331 67-442 10-351 (353)
23 2z9v_A Aspartate aminotransfer 100.0 6.3E-30 2.2E-34 257.5 30.2 336 65-445 17-372 (392)
24 1elu_A L-cysteine/L-cystine C- 100.0 6.4E-30 2.2E-34 257.1 30.1 334 65-439 25-387 (390)
25 3lvm_A Cysteine desulfurase; s 100.0 7.4E-29 2.5E-33 252.3 37.5 345 65-448 31-403 (423)
26 1t3i_A Probable cysteine desul 100.0 1.1E-29 3.8E-34 257.9 30.5 357 57-446 29-415 (420)
27 3zrp_A Serine-pyruvate aminotr 100.0 8.5E-30 2.9E-34 255.5 29.1 334 67-446 12-365 (384)
28 1kmj_A Selenocysteine lyase; p 100.0 2.3E-29 7.7E-34 254.3 32.4 349 60-444 27-405 (406)
29 2huf_A Alanine glyoxylate amin 100.0 1.4E-29 4.6E-34 255.1 30.6 336 67-446 29-385 (393)
30 1iug_A Putative aspartate amin 100.0 1.2E-29 4.1E-34 251.5 28.2 330 67-444 11-348 (352)
31 3cai_A Possible aminotransfera 100.0 1.9E-29 6.6E-34 255.2 28.9 339 66-439 36-404 (406)
32 3e9k_A Kynureninase; kynurenin 100.0 9E-30 3.1E-34 262.5 26.5 313 91-444 107-461 (465)
33 3kgw_A Alanine-glyoxylate amin 100.0 2.9E-29 1E-33 252.4 28.8 336 67-446 33-390 (393)
34 1vjo_A Alanine--glyoxylate ami 100.0 5.6E-29 1.9E-33 250.7 30.8 333 65-441 42-392 (393)
35 3vax_A Putative uncharacterize 100.0 3.6E-29 1.2E-33 252.6 28.4 342 66-443 30-399 (400)
36 2ch1_A 3-hydroxykynurenine tra 100.0 1E-28 3.5E-33 249.0 30.3 335 67-445 28-384 (396)
37 3ffr_A Phosphoserine aminotran 100.0 6.6E-29 2.3E-33 247.0 28.2 330 68-441 15-361 (362)
38 3f0h_A Aminotransferase; RER07 100.0 7.3E-29 2.5E-33 248.2 28.4 332 67-442 29-372 (376)
39 1m32_A 2-aminoethylphosphonate 100.0 2.5E-28 8.7E-33 243.0 31.3 333 67-442 14-363 (366)
40 2w8t_A SPT, serine palmitoyltr 100.0 2.2E-28 7.7E-33 249.2 31.1 340 59-447 68-418 (427)
41 3dzz_A Putative pyridoxal 5'-p 100.0 3.9E-28 1.3E-32 244.2 31.3 350 54-444 26-389 (391)
42 3e77_A Phosphoserine aminotran 100.0 3.2E-29 1.1E-33 248.5 22.5 336 65-443 21-374 (377)
43 1wyu_A Glycine dehydrogenase ( 100.0 7.4E-28 2.5E-32 246.2 32.7 363 29-441 38-437 (438)
44 3g0t_A Putative aminotransfera 100.0 2.3E-27 7.7E-32 242.4 33.8 370 39-442 28-435 (437)
45 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 1E-28 3.4E-33 246.7 21.9 328 67-443 20-369 (371)
46 3tqx_A 2-amino-3-ketobutyrate 100.0 3.3E-28 1.1E-32 245.4 24.8 340 56-444 44-396 (399)
47 3a2b_A Serine palmitoyltransfe 100.0 5.8E-28 2E-32 243.8 25.9 340 54-444 42-392 (398)
48 3h14_A Aminotransferase, class 100.0 1.1E-26 3.8E-31 233.8 34.9 360 40-445 17-383 (391)
49 1j32_A Aspartate aminotransfer 100.0 2.6E-27 9E-32 238.1 28.1 346 53-444 28-387 (388)
50 3ke3_A Putative serine-pyruvat 100.0 1.3E-27 4.5E-32 239.7 25.7 316 89-445 29-377 (379)
51 3qm2_A Phosphoserine aminotran 100.0 7.3E-29 2.5E-33 247.3 16.1 331 65-443 35-384 (386)
52 1xi9_A Putative transaminase; 100.0 5.8E-27 2E-31 237.1 30.3 350 53-444 36-403 (406)
53 3dyd_A Tyrosine aminotransfera 100.0 1.6E-26 5.6E-31 235.5 33.7 353 55-445 54-425 (427)
54 3ele_A Amino transferase; RER0 100.0 3.1E-27 1.1E-31 238.4 28.0 347 55-445 35-397 (398)
55 3a9z_A Selenocysteine lyase; P 100.0 2.2E-26 7.6E-31 234.7 34.6 354 66-446 28-430 (432)
56 2bkw_A Alanine-glyoxylate amin 100.0 7.9E-28 2.7E-32 241.3 23.3 339 68-443 16-383 (385)
57 3nra_A Aspartate aminotransfer 100.0 9.1E-28 3.1E-32 242.9 23.9 347 57-445 41-406 (407)
58 3m5u_A Phosphoserine aminotran 100.0 6.3E-28 2.2E-32 238.4 21.8 330 65-443 13-359 (361)
59 4dq6_A Putative pyridoxal phos 100.0 9.9E-27 3.4E-31 233.9 30.6 342 55-441 32-390 (391)
60 1qz9_A Kynureninase; kynurenin 100.0 8.9E-27 3.1E-31 236.4 30.3 332 67-443 39-401 (416)
61 1fc4_A 2-amino-3-ketobutyrate 100.0 4E-27 1.4E-31 237.8 26.6 342 53-445 43-398 (401)
62 1gd9_A Aspartate aminotransfer 100.0 8.5E-27 2.9E-31 234.4 28.8 347 57-445 28-387 (389)
63 1rv3_A Serine hydroxymethyltra 100.0 4.1E-27 1.4E-31 243.3 27.0 370 41-443 31-430 (483)
64 3hl2_A O-phosphoseryl-tRNA(SEC 100.0 1.8E-26 6.3E-31 227.3 29.1 391 25-450 34-467 (501)
65 3kki_A CAI-1 autoinducer synth 100.0 6.1E-27 2.1E-31 237.2 26.7 325 67-443 73-403 (409)
66 1o4s_A Aspartate aminotransfer 100.0 1.6E-26 5.6E-31 232.5 29.5 339 53-441 39-386 (389)
67 2o0r_A RV0858C (N-succinyldiam 100.0 7E-27 2.4E-31 236.9 26.9 347 57-443 27-395 (411)
68 2gb3_A Aspartate aminotransfer 100.0 1E-26 3.5E-31 235.6 27.6 346 54-446 42-404 (409)
69 3ly1_A Putative histidinol-pho 100.0 4.4E-26 1.5E-30 226.2 31.1 329 54-442 15-350 (354)
70 2zc0_A Alanine glyoxylate tran 100.0 3.8E-26 1.3E-30 231.1 31.0 349 54-444 33-404 (407)
71 3get_A Histidinol-phosphate am 100.0 3.1E-26 1.1E-30 228.3 29.4 328 55-441 30-364 (365)
72 1v72_A Aldolase; PLP-dependent 100.0 5.5E-27 1.9E-31 232.6 23.3 328 58-444 10-353 (356)
73 3l8a_A METC, putative aminotra 100.0 2.8E-26 9.5E-31 233.3 29.0 348 54-442 60-420 (421)
74 3ftb_A Histidinol-phosphate am 100.0 9.5E-26 3.3E-30 224.3 32.2 329 54-442 25-359 (361)
75 3kax_A Aminotransferase, class 100.0 3.3E-26 1.1E-30 229.4 29.0 344 55-441 24-382 (383)
76 2x5d_A Probable aminotransfera 100.0 5.7E-26 1.9E-30 230.3 30.4 353 52-447 34-401 (412)
77 2fnu_A Aminotransferase; prote 100.0 2E-26 7E-31 230.3 26.5 338 65-445 8-373 (375)
78 1bs0_A Protein (8-amino-7-oxon 100.0 1.3E-26 4.5E-31 232.6 25.2 337 54-440 38-383 (384)
79 2z61_A Probable aspartate amin 100.0 2.6E-26 8.8E-31 229.4 27.0 338 53-442 27-369 (370)
80 1u08_A Hypothetical aminotrans 100.0 3.7E-26 1.3E-30 229.6 28.2 342 57-438 32-384 (386)
81 1v2d_A Glutamine aminotransfer 100.0 5.6E-26 1.9E-30 227.8 29.4 336 58-446 28-373 (381)
82 1b9h_A AHBA synthase, protein 100.0 4E-26 1.4E-30 229.5 28.1 334 69-443 16-387 (388)
83 3euc_A Histidinol-phosphate am 99.9 3E-26 1E-30 228.6 26.5 327 58-441 33-365 (367)
84 1b5p_A Protein (aspartate amin 99.9 1.3E-25 4.3E-30 225.7 31.2 340 54-440 30-381 (385)
85 1bw0_A TAT, protein (tyrosine 99.9 1.3E-25 4.5E-30 227.9 31.6 352 57-445 35-414 (416)
86 2c0r_A PSAT, phosphoserine ami 99.9 2.3E-26 7.9E-31 229.0 25.5 328 65-443 12-360 (362)
87 3ffh_A Histidinol-phosphate am 99.9 2.2E-25 7.5E-30 222.0 32.4 329 55-440 32-362 (363)
88 2dou_A Probable N-succinyldiam 99.9 5.7E-26 1.9E-30 227.4 28.0 346 53-441 23-375 (376)
89 1c7n_A Cystalysin; transferase 99.9 1.4E-25 4.8E-30 226.4 30.6 347 57-446 33-395 (399)
90 1svv_A Threonine aldolase; str 99.9 1.7E-26 5.8E-31 229.3 23.5 322 65-444 23-358 (359)
91 3fdb_A Beta C-S lyase, putativ 99.9 7.7E-26 2.6E-30 226.3 27.2 344 52-442 20-374 (377)
92 3aow_A Putative uncharacterize 99.9 4E-25 1.4E-29 226.4 32.6 348 56-445 77-446 (448)
93 1vp4_A Aminotransferase, putat 99.9 9.4E-26 3.2E-30 229.7 27.5 350 56-446 44-420 (425)
94 3cq5_A Histidinol-phosphate am 99.9 1.2E-24 4.1E-29 217.2 35.0 317 67-441 43-365 (369)
95 3dr4_A Putative perosamine syn 99.9 2.8E-26 9.6E-31 230.9 22.8 330 69-441 35-390 (391)
96 1d2f_A MALY protein; aminotran 99.9 3.9E-25 1.3E-29 222.4 30.8 336 67-444 41-389 (390)
97 1yiz_A Kynurenine aminotransfe 99.9 1.9E-25 6.6E-30 227.6 28.9 346 57-441 39-426 (429)
98 2zyj_A Alpha-aminodipate amino 99.9 1.3E-25 4.3E-30 226.6 27.0 339 57-445 34-394 (397)
99 2bwn_A 5-aminolevulinate synth 99.9 7.3E-26 2.5E-30 228.6 24.9 329 68-444 61-400 (401)
100 3frk_A QDTB; aminotransferase, 99.9 1.4E-26 4.9E-31 231.5 19.1 328 69-443 16-367 (373)
101 2o1b_A Aminotransferase, class 99.9 8.5E-26 2.9E-30 228.5 24.6 345 55-442 47-401 (404)
102 2c81_A Glutamine-2-deoxy-scyll 99.9 1.5E-25 5.2E-30 227.6 26.6 340 69-444 15-414 (418)
103 3jtx_A Aminotransferase; NP_28 99.9 3.8E-25 1.3E-29 222.9 29.2 350 53-441 28-395 (396)
104 1lc5_A COBD, L-threonine-O-3-p 99.9 3.9E-25 1.3E-29 220.3 28.7 333 53-445 22-361 (364)
105 3b46_A Aminotransferase BNA3; 99.9 1.4E-25 4.8E-30 229.9 25.6 348 53-438 55-441 (447)
106 2dkj_A Serine hydroxymethyltra 99.9 1.4E-25 4.7E-30 226.9 24.1 358 40-443 9-387 (407)
107 3uwc_A Nucleotide-sugar aminot 99.9 5.5E-26 1.9E-30 227.2 20.5 325 72-443 21-370 (374)
108 2vi8_A Serine hydroxymethyltra 99.9 2.7E-25 9.2E-30 224.6 24.8 332 69-445 36-388 (405)
109 3tcm_A Alanine aminotransferas 99.9 7.8E-25 2.7E-29 227.2 28.7 340 70-446 109-496 (500)
110 3op7_A Aminotransferase class 99.9 6.8E-25 2.3E-29 219.4 27.2 318 75-444 47-371 (375)
111 2a7v_A Serine hydroxymethyltra 99.9 1.1E-24 3.7E-29 223.3 28.9 364 41-445 41-442 (490)
112 1w23_A Phosphoserine aminotran 99.9 1.9E-25 6.4E-30 222.1 22.4 329 67-442 13-358 (360)
113 2fyf_A PSAT, phosphoserine ami 99.9 4.9E-25 1.7E-29 222.4 25.6 327 67-443 50-397 (398)
114 3ezs_A Aminotransferase ASPB; 99.9 1.1E-24 3.8E-29 217.8 27.9 338 53-442 22-373 (376)
115 3piu_A 1-aminocyclopropane-1-c 99.9 1.1E-24 3.9E-29 222.4 28.1 356 53-446 34-434 (435)
116 2oga_A Transaminase; PLP-depen 99.9 3.4E-25 1.2E-29 223.6 23.9 340 56-444 31-396 (399)
117 2po3_A 4-dehydrase; external a 99.9 1.5E-24 5E-29 220.8 28.3 348 60-453 21-395 (424)
118 3hdo_A Histidinol-phosphate am 99.9 1.6E-24 5.5E-29 215.5 27.7 320 58-442 29-353 (360)
119 1mdo_A ARNB aminotransferase; 99.9 7.8E-25 2.7E-29 220.3 25.0 331 69-445 19-387 (393)
120 3qgu_A LL-diaminopimelate amin 99.9 1.1E-23 3.7E-28 216.0 33.9 358 40-442 53-438 (449)
121 1fg7_A Histidinol phosphate am 99.9 4.5E-24 1.5E-28 212.1 28.8 282 99-439 62-353 (356)
122 3p1t_A Putative histidinol-pho 99.9 4.4E-24 1.5E-28 210.1 28.6 314 57-441 18-334 (337)
123 3fvs_A Kynurenine--oxoglutarat 99.9 1.5E-24 5.1E-29 220.5 25.7 350 56-443 29-421 (422)
124 1jg8_A L-ALLO-threonine aldola 99.9 2.4E-25 8.3E-30 220.2 18.8 327 59-444 7-346 (347)
125 3n0l_A Serine hydroxymethyltra 99.9 6.1E-24 2.1E-28 215.4 29.3 333 68-444 37-389 (417)
126 3b8x_A WBDK, pyridoxamine 5-ph 99.9 1.4E-23 4.8E-28 211.1 30.0 335 67-437 12-389 (390)
127 1o69_A Aminotransferase; struc 99.9 7.1E-24 2.4E-28 213.6 26.8 330 69-442 11-385 (394)
128 2r2n_A Kynurenine/alpha-aminoa 99.9 5.5E-23 1.9E-27 209.2 33.6 322 86-444 73-424 (425)
129 3fkd_A L-threonine-O-3-phospha 99.9 7.5E-24 2.6E-28 209.8 26.4 323 53-442 13-340 (350)
130 1iay_A ACC synthase 2, 1-amino 99.9 6.1E-24 2.1E-28 216.4 26.4 343 59-442 40-425 (428)
131 2x5f_A Aspartate_tyrosine_phen 99.9 2.8E-24 9.6E-29 219.1 23.2 342 57-444 49-429 (430)
132 3e2y_A Kynurenine-oxoglutarate 99.9 1E-23 3.6E-28 213.3 27.0 345 56-438 24-407 (410)
133 2cb1_A O-acetyl homoserine sul 99.9 3.1E-23 1.1E-27 210.2 30.1 295 95-439 56-411 (412)
134 1c4k_A Protein (ornithine deca 99.9 6.5E-24 2.2E-28 227.0 25.7 309 97-445 175-567 (730)
135 3ruy_A Ornithine aminotransfer 99.9 4.9E-23 1.7E-27 207.2 30.7 319 68-441 53-391 (392)
136 2x3l_A ORN/Lys/Arg decarboxyla 99.9 8.8E-25 3E-29 223.5 17.8 292 96-445 58-354 (446)
137 3rq1_A Aminotransferase class 99.9 3.3E-24 1.1E-28 217.7 21.9 343 54-446 37-417 (418)
138 3ju7_A Putative PLP-dependent 99.9 1.3E-23 4.4E-28 210.1 25.7 333 68-443 14-374 (377)
139 3ecd_A Serine hydroxymethyltra 99.9 3.5E-23 1.2E-27 210.4 29.0 334 68-444 44-397 (425)
140 3g7q_A Valine-pyruvate aminotr 99.9 1.9E-23 6.5E-28 211.9 26.2 370 41-446 16-415 (417)
141 3ihj_A Alanine aminotransferas 99.9 3.3E-23 1.1E-27 214.7 28.0 338 71-445 105-494 (498)
142 3ei9_A LL-diaminopimelate amin 99.9 8.3E-23 2.8E-27 208.3 30.2 349 39-438 39-422 (432)
143 3if2_A Aminotransferase; YP_26 99.9 6.3E-23 2.2E-27 209.9 28.5 357 56-446 32-442 (444)
144 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 8.6E-23 3E-27 208.5 29.1 337 68-441 41-433 (437)
145 2vyc_A Biodegradative arginine 99.9 3.7E-23 1.3E-27 223.1 26.8 305 98-445 208-606 (755)
146 3nyt_A Aminotransferase WBPE; 99.9 6.7E-24 2.3E-28 211.7 19.5 322 69-439 15-359 (367)
147 4f4e_A Aromatic-amino-acid ami 99.9 2.4E-23 8E-28 211.6 23.4 341 56-441 50-419 (420)
148 3ez1_A Aminotransferase MOCR f 99.9 7.1E-23 2.4E-27 208.2 26.7 348 57-445 27-416 (423)
149 3gbx_A Serine hydroxymethyltra 99.9 4E-23 1.4E-27 209.5 24.7 333 68-444 42-396 (420)
150 1vef_A Acetylornithine/acetyl- 99.9 8.5E-23 2.9E-27 205.7 26.6 321 67-441 61-394 (395)
151 2ord_A Acoat, acetylornithine 99.9 2.1E-22 7.1E-27 203.0 29.0 319 68-443 57-396 (397)
152 3ppl_A Aspartate aminotransfer 99.9 7.3E-23 2.5E-27 208.4 25.0 316 86-445 73-421 (427)
153 1e5e_A MGL, methionine gamma-l 99.9 2.6E-22 8.8E-27 202.7 28.7 287 96-445 63-396 (404)
154 3fsl_A Aromatic-amino-acid ami 99.9 2.6E-23 8.7E-28 209.5 21.1 325 69-440 46-396 (397)
155 1uu1_A Histidinol-phosphate am 99.9 6.1E-23 2.1E-27 202.1 23.1 297 67-439 32-333 (335)
156 2eh6_A Acoat, acetylornithine 99.9 1.5E-22 5E-27 202.4 26.0 326 54-440 27-374 (375)
157 1gc0_A Methionine gamma-lyase; 99.9 1.1E-22 3.7E-27 205.2 25.2 286 95-439 65-396 (398)
158 3lws_A Aromatic amino acid bet 99.9 3.7E-23 1.3E-27 205.3 21.4 292 99-437 51-352 (357)
159 3t18_A Aminotransferase class 99.9 8.9E-23 3E-27 206.8 24.3 337 55-445 37-411 (413)
160 3asa_A LL-diaminopimelate amin 99.9 1.5E-22 5.2E-27 204.3 25.6 351 39-445 16-394 (400)
161 4adb_A Succinylornithine trans 99.9 1.3E-21 4.3E-26 197.7 32.2 327 68-446 56-402 (406)
162 3h7f_A Serine hydroxymethyltra 99.9 1.7E-22 5.9E-27 206.8 26.2 336 67-446 56-416 (447)
163 1ax4_A Tryptophanase; tryptoph 99.9 2.3E-22 7.9E-27 207.1 25.3 340 70-447 55-444 (467)
164 1ajs_A Aspartate aminotransfer 99.9 1.6E-22 5.3E-27 204.9 23.3 348 53-444 28-411 (412)
165 2rfv_A Methionine gamma-lyase; 99.9 1.8E-22 6.2E-27 203.6 23.7 291 94-439 63-395 (398)
166 3pj0_A LMO0305 protein; struct 99.9 2E-22 6.7E-27 200.2 23.5 310 69-430 28-345 (359)
167 2pb2_A Acetylornithine/succiny 99.9 1.5E-21 5E-26 198.3 30.1 339 53-444 55-418 (420)
168 3d6k_A Putative aminotransfera 99.9 3.8E-22 1.3E-26 202.8 25.7 348 57-445 34-419 (422)
169 1qgn_A Protein (cystathionine 99.9 5.4E-22 1.9E-26 201.7 25.6 288 95-443 114-444 (445)
170 1z7d_A Ornithine aminotransfer 99.9 1.3E-20 4.6E-25 191.9 34.1 339 54-444 64-429 (433)
171 3qhx_A Cystathionine gamma-syn 99.9 5.8E-22 2E-26 199.3 23.6 286 96-441 67-391 (392)
172 3nx3_A Acoat, acetylornithine 99.9 4.3E-21 1.5E-25 193.2 29.9 335 53-442 34-393 (395)
173 3b1d_A Betac-S lyase; HET: PLP 99.8 3.6E-25 1.2E-29 222.9 0.0 343 56-442 32-391 (392)
174 2aeu_A Hypothetical protein MJ 99.9 3E-21 1E-25 192.9 28.5 340 42-446 14-373 (374)
175 2ez2_A Beta-tyrosinase, tyrosi 99.9 1E-21 3.6E-26 201.6 25.4 330 69-447 57-434 (456)
176 1yaa_A Aspartate aminotransfer 99.9 1.9E-22 6.6E-27 204.3 19.3 342 54-443 28-410 (412)
177 1cs1_A CGS, protein (cystathio 99.9 4.1E-21 1.4E-25 192.8 28.8 284 97-439 54-382 (386)
178 1s0a_A Adenosylmethionine-8-am 99.9 4.5E-21 1.5E-25 195.3 29.5 332 68-443 60-423 (429)
179 3ri6_A O-acetylhomoserine sulf 99.9 5.9E-22 2E-26 200.8 22.6 294 97-441 84-429 (430)
180 3ndn_A O-succinylhomoserine su 99.9 4.8E-22 1.6E-26 201.0 21.6 288 95-441 81-413 (414)
181 1pff_A Methionine gamma-lyase; 99.9 6.3E-22 2.1E-26 194.4 21.8 282 99-440 2-330 (331)
182 3i4j_A Aminotransferase, class 99.9 1E-20 3.5E-25 192.7 31.5 343 68-444 46-428 (430)
183 2oat_A Ornithine aminotransfer 99.9 4.4E-21 1.5E-25 195.9 28.6 326 68-443 93-438 (439)
184 3f6t_A Aspartate aminotransfer 99.9 2.3E-21 7.8E-26 202.5 26.6 360 60-446 108-527 (533)
185 2fq6_A Cystathionine beta-lyas 99.9 1.1E-21 3.8E-26 198.2 22.9 287 96-438 83-412 (415)
186 2ay1_A Aroat, aromatic amino a 99.9 7.8E-22 2.7E-26 198.5 21.4 338 55-440 26-392 (394)
187 2q7w_A Aspartate aminotransfer 99.9 2.2E-22 7.5E-27 202.6 17.3 321 67-440 44-395 (396)
188 1sff_A 4-aminobutyrate aminotr 99.9 1E-20 3.6E-25 192.3 29.5 331 68-445 58-425 (426)
189 3acz_A Methionine gamma-lyase; 99.9 6.3E-21 2.2E-25 191.6 27.1 283 96-442 60-387 (389)
190 2ctz_A O-acetyl-L-homoserine s 99.9 2E-21 7E-26 197.2 23.5 297 96-441 59-420 (421)
191 2eo5_A 419AA long hypothetical 99.9 2E-20 7E-25 189.8 29.9 315 69-444 61-418 (419)
192 7aat_A Aspartate aminotransfer 99.9 1.7E-21 5.7E-26 196.6 21.4 353 41-441 14-400 (401)
193 3dxv_A Alpha-amino-epsilon-cap 99.9 3.3E-21 1.1E-25 196.9 22.7 330 68-446 60-427 (439)
194 3cog_A Cystathionine gamma-lya 99.9 1.1E-21 3.9E-26 197.8 18.4 283 98-444 70-398 (403)
195 3a8u_X Omega-amino acid--pyruv 99.9 3.4E-20 1.2E-24 190.0 28.3 338 68-444 67-447 (449)
196 3meb_A Aspartate aminotransfer 99.9 1.7E-20 5.7E-25 192.1 24.9 341 52-443 45-443 (448)
197 3gju_A Putative aminotransfera 99.9 3.1E-19 1E-23 183.4 34.2 356 53-445 49-457 (460)
198 3n5m_A Adenosylmethionine-8-am 99.9 1.6E-19 5.6E-24 185.0 31.5 355 53-442 47-450 (452)
199 2oqx_A Tryptophanase; lyase, p 99.9 1.8E-20 6E-25 193.0 22.9 342 70-446 53-444 (467)
200 3tfu_A Adenosylmethionine-8-am 99.9 9.2E-20 3.1E-24 186.9 27.4 336 68-445 92-454 (457)
201 1ibj_A CBL, cystathionine beta 99.9 3E-21 1E-25 197.7 16.1 284 96-442 134-460 (464)
202 3hmu_A Aminotransferase, class 99.9 6E-19 2E-23 181.5 33.0 349 53-445 53-453 (472)
203 4eu1_A Mitochondrial aspartate 99.9 2.2E-20 7.5E-25 189.0 21.9 350 41-441 27-408 (409)
204 4a6r_A Omega transaminase; tra 99.9 4.8E-19 1.6E-23 181.9 31.5 352 53-446 48-451 (459)
205 1n8p_A Cystathionine gamma-lya 99.9 1.4E-20 4.7E-25 189.3 19.3 289 97-440 57-391 (393)
206 3i5t_A Aminotransferase; pyrid 99.8 3.3E-19 1.1E-23 183.7 28.0 355 53-446 52-456 (476)
207 3n75_A LDC, lysine decarboxyla 99.8 1.5E-19 5.2E-24 191.6 26.1 303 97-446 197-562 (715)
208 2cjg_A L-lysine-epsilon aminot 99.8 2.1E-19 7.3E-24 183.9 26.2 335 68-444 71-448 (449)
209 1zod_A DGD, 2,2-dialkylglycine 99.8 6.3E-19 2.2E-23 179.6 29.4 331 68-444 60-432 (433)
210 3k7y_A Aspartate aminotransfer 99.8 3.3E-20 1.1E-24 186.7 19.3 349 41-443 15-404 (405)
211 4ffc_A 4-aminobutyrate aminotr 99.8 7E-19 2.4E-23 180.3 29.3 331 68-445 81-450 (453)
212 3dod_A Adenosylmethionine-8-am 99.8 5.6E-18 1.9E-22 173.4 35.4 355 53-447 42-446 (448)
213 3nmy_A Xometc, cystathionine g 99.8 2.4E-19 8.2E-24 180.3 23.8 285 97-442 69-397 (400)
214 3l44_A Glutamate-1-semialdehyd 99.8 1.4E-18 4.7E-23 177.2 27.8 332 53-446 53-432 (434)
215 3k28_A Glutamate-1-semialdehyd 99.8 6.6E-19 2.2E-23 179.3 24.9 336 53-444 51-427 (429)
216 3jzl_A Putative cystathionine 99.8 1.5E-19 5E-24 181.8 18.8 251 97-400 61-340 (409)
217 2epj_A Glutamate-1-semialdehyd 99.8 1.1E-18 3.7E-23 178.0 25.6 331 53-444 54-431 (434)
218 3oks_A 4-aminobutyrate transam 99.8 8E-18 2.7E-22 172.3 30.6 328 68-442 78-449 (451)
219 3fq8_A Glutamate-1-semialdehyd 99.8 1.7E-18 6E-23 176.0 25.0 331 53-443 50-426 (427)
220 2zy4_A L-aspartate beta-decarb 99.8 1.2E-18 4E-23 182.2 23.5 360 59-445 108-523 (546)
221 3bwn_A AT1G70560, L-tryptophan 99.8 1.1E-18 3.7E-23 175.4 22.0 325 57-441 24-384 (391)
222 3i16_A Aluminum resistance pro 99.8 1.6E-18 5.6E-23 174.7 22.2 251 97-400 75-357 (427)
223 2cy8_A D-phgat, D-phenylglycin 99.8 4.4E-18 1.5E-22 174.4 25.7 332 53-446 55-437 (453)
224 4e77_A Glutamate-1-semialdehyd 99.8 1.6E-17 5.4E-22 169.0 28.8 334 53-442 51-427 (429)
225 1ohv_A 4-aminobutyrate aminotr 99.8 2E-18 6.7E-23 177.7 21.6 345 53-443 61-470 (472)
226 3hvy_A Cystathionine beta-lyas 99.8 2.3E-18 7.8E-23 173.7 20.4 249 97-399 76-356 (427)
227 3ht4_A Aluminum resistance pro 99.8 3.5E-18 1.2E-22 173.1 18.2 255 96-399 66-345 (431)
228 4h51_A Aspartate aminotransfer 99.8 4.9E-17 1.7E-21 163.7 25.0 356 40-446 30-419 (420)
229 2hox_A ALLIIN lyase 1; cystein 99.8 3.9E-18 1.3E-22 173.2 16.4 328 58-441 59-422 (427)
230 2e7u_A Glutamate-1-semialdehyd 99.8 2.3E-17 7.9E-22 167.5 21.7 327 53-440 50-423 (424)
231 3ou5_A Serine hydroxymethyltra 99.8 5.9E-16 2E-20 152.1 28.0 337 68-442 66-439 (490)
232 2yky_A Beta-transaminase; tran 99.5 8.2E-18 2.8E-22 171.3 0.0 334 52-446 97-462 (465)
233 4ao9_A Beta-phenylalanine amin 99.6 4.5E-14 1.5E-18 142.8 23.0 333 53-446 85-448 (454)
234 4e3q_A Pyruvate transaminase; 99.6 3.6E-12 1.2E-16 129.9 31.4 355 53-445 65-469 (473)
235 4atq_A 4-aminobutyrate transam 99.5 3E-11 1E-15 122.6 33.0 330 67-443 80-454 (456)
236 4a0g_A Adenosylmethionine-8-am 99.4 1.1E-11 3.7E-16 134.8 22.1 342 69-444 399-828 (831)
237 1xpp_A TA1416, DNA-directed RN 43.2 1.1E+02 0.0039 23.6 7.9 89 356-451 6-96 (115)
238 2pa8_L DNA-directed RNA polyme 40.5 55 0.0019 24.3 5.4 79 364-447 3-83 (92)
239 3kts_A Glycerol uptake operon 30.1 32 0.0011 29.6 3.0 50 191-249 18-67 (192)
240 4gqr_A Pancreatic alpha-amylas 29.8 27 0.00092 34.6 2.9 33 211-249 69-101 (496)
241 3h0g_K DNA-directed RNA polyme 29.0 2E+02 0.0069 22.5 7.2 76 373-451 27-104 (123)
242 1uta_A FTSN, MSGA, cell divisi 28.7 53 0.0018 23.4 3.6 46 387-438 22-67 (81)
243 3l6u_A ABC-type sugar transpor 27.9 2.4E+02 0.0082 24.9 9.0 77 157-245 13-97 (293)
244 1twf_K B13.6, DNA-directed RNA 27.4 93 0.0032 24.4 5.0 76 373-451 28-105 (120)
245 1x60_A Sporulation-specific N- 25.9 70 0.0024 22.5 3.8 47 387-439 22-68 (79)
246 3vc3_A Beta-cyanoalnine syntha 23.8 1.1E+02 0.0038 28.8 5.8 54 119-184 89-142 (344)
247 1tks_A 3,4-dihydroxy-2-butanon 23.8 1.4E+02 0.0047 25.8 5.7 35 202-242 159-193 (204)
248 1g94_A Alpha-amylase; beta-alp 23.5 40 0.0014 33.2 2.7 33 211-249 57-89 (448)
249 3uug_A Multiple sugar-binding 22.8 2.9E+02 0.0098 25.0 8.6 67 167-245 25-92 (330)
250 3m9w_A D-xylose-binding peripl 22.1 3E+02 0.01 24.7 8.5 68 166-245 23-91 (313)
251 1y80_A Predicted cobalamin bin 22.0 2.8E+02 0.0097 23.6 7.8 73 166-247 107-180 (210)
252 2yxb_A Coenzyme B12-dependent 21.3 2.4E+02 0.0082 23.0 6.8 82 155-246 19-108 (161)
253 3bh4_A Alpha-amylase; calcium, 21.0 52 0.0018 32.7 3.0 33 211-249 71-103 (483)
254 1mxg_A Alpha amylase; hyperthe 21.0 54 0.0018 32.1 3.1 33 211-249 79-111 (435)
255 1ud2_A Amylase, alpha-amylase; 20.9 53 0.0018 32.6 3.1 33 211-249 73-105 (480)
256 1lwj_A 4-alpha-glucanotransfer 20.5 57 0.0019 32.0 3.2 32 211-248 62-93 (441)
257 1hvx_A Alpha-amylase; hydrolas 20.4 55 0.0019 32.9 3.1 33 211-249 74-106 (515)
258 1wpc_A Glucan 1,4-alpha-maltoh 20.3 56 0.0019 32.5 3.1 33 211-249 75-107 (485)
No 1
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=100.00 E-value=9.9e-62 Score=504.74 Aligned_cols=492 Identities=86% Similarity=1.341 Sum_probs=391.5
Q ss_pred CcccccccCCCCccccccCchHHhhcCCCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCcccccccCCChHHHHHHHHHHh
Q 011057 1 MVLSKTFSESDESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAI 80 (494)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 80 (494)
|+|++..++.+.++.+.|++++++..||.+.+|+.+.+.+++++.+++.+++++||.+++.+|++++++|.+.+++.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~p~~~~~~~~~~~~~~~~i~l~gnp~~~l~s~~t~~~~~~v~~~l~~~~ 80 (502)
T 3hbx_A 1 MVLSHAVSESDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMSSI 80 (502)
T ss_dssp -----------CCCSCTTTSSGGGSCCCSSSCCSSCCCHHHHHHHHHHHGGGSCCGGGBTTCCSCCCCCHHHHHHHHHTT
T ss_pred CCcccccCCCcccccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHhccCCCCCceeccccCCCCCHHHHHHHHHHh
Confidence 67888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeC
Q 011057 81 NKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTG 160 (494)
Q Consensus 81 ~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~ 160 (494)
+.+..+|..+|...++|+++++|+++++|++.++.....+++|+||++|+++++++++.++.++++..|.+..+++||++
T Consensus 81 ~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~ 160 (502)
T 3hbx_A 81 NKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTG 160 (502)
T ss_dssp TCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEE
T ss_pred ccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEc
Confidence 99988899999999999999999999999983222234678899999999999999998887776667766666799999
Q ss_pred CCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCce
Q 011057 161 ANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTP 240 (494)
Q Consensus 161 ~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~ 240 (494)
..+|+++.++++..|++++.|+++++++.+|+++|+++|+++|++|++++++|+||.++|+++|+++|++++++++.++|
T Consensus 161 ~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~ 240 (502)
T 3hbx_A 161 ANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTP 240 (502)
T ss_dssp TTCCHHHHHHHHHTTCEEEEECCBTTBCSCCHHHHHHHCCTTEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCC
T ss_pred CCchHHHHHHHHHcCceeEEEecCCCcCcCCHHHHHHHHhhCCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCe
Confidence 99999999999999999999999875589999999999999999999999999999999999999999998555555899
Q ss_pred EEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCc
Q 011057 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSK 320 (494)
Q Consensus 241 l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~ 320 (494)
+|||+||++++.++..+..++++...++|++++++|||+++|.|+|+++++++..+...+.....|++.....+.+.+++
T Consensus 241 l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr 320 (502)
T 3hbx_A 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSK 320 (502)
T ss_dssp EEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSC
T ss_pred EEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCc
Confidence 99999999887776677777777778999999999999999999999999887766666666678887766666777899
Q ss_pred chHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCc
Q 011057 321 GSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGW 400 (494)
Q Consensus 321 ~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi 400 (494)
++..++++|++++.++.+++.++.++..+++++|.+.|+++++++++.+.+..++++|++.+..+.+..++.++|.++|+
T Consensus 321 ~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi 400 (502)
T 3hbx_A 321 GSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGW 400 (502)
T ss_dssp BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEESSCSSCCHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEecCCCcCCHHHHHHHHHhCCc
Confidence 88889999999999999999999999999999999999999989998762368999999976445678899999999999
Q ss_pred eeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHHhcCcccccccccccc-----Cc-----cCccccccc
Q 011057 401 IVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDSLPSKVLVPASEQN-----GR-----NGKKTEIET 470 (494)
Q Consensus 401 ~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~ 470 (494)
+++.+..|....+..++|++++..+|.+++++|+++|+++++.+++.+....+...... .+ ..++....+
T Consensus 401 ~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (502)
T 3hbx_A 401 IVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELDELPSRVIHKISLGQEKSESNSDNLMVTVKKSDIDK 480 (502)
T ss_dssp BCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHTCC--------------------------------
T ss_pred EEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhCccccccccccccccccccccccccccccchhhh
Confidence 99887777766677899999999999999999999999999999998777644333221 11 224556677
Q ss_pred ccccchhhhhhhcccccccCCCCC
Q 011057 471 QREVTTYWRKFVSERKANNKNKIC 494 (494)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~ 494 (494)
++...+||.+.++ .+. ++|+||
T Consensus 481 ~~~~~~~~~~~~~-~~~-~~~~~~ 502 (502)
T 3hbx_A 481 QRDIITGWKKFVA-DRK-KTSGIC 502 (502)
T ss_dssp ------------------------
T ss_pred hhhhhhHHHhhhh-ccc-ccccCC
Confidence 8888999999997 455 789999
No 2
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=100.00 E-value=1.8e-51 Score=423.21 Aligned_cols=433 Identities=45% Similarity=0.828 Sum_probs=347.3
Q ss_pred cccCchHHhhcCCCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCcccccccCCChHHHHHHHHHHhcccCCCCCCChhhHH
Q 011057 16 STFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTE 95 (494)
Q Consensus 16 ~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (494)
+.|++......++..++|++|++++++++.+.+.+..++.+..++..|++++++|.+.+++.++++.+..+|..+|+..+
T Consensus 2 ~~~~~~~~~~~~~~~~lp~~g~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~e~~~~a~~~~~~~~~~~~~~~~ 81 (452)
T 2dgk_A 2 SRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAA 81 (452)
T ss_dssp -------------CCSCCCSCCCHHHHHHHHHHHGGGSCCCTTBCSCCSCCCCCHHHHHHHHHTTTCBTTCTTTCHHHHH
T ss_pred CcccchHHhhhccCCCCCCCCCCHHHHHHHHHHHhcCCCCCccCCCCeeCCCchHHHHHHHHHHhccCCCChhhChhHHH
Confidence 34566677777777799999999999999999998777777777778887777889999999999988888889999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcC
Q 011057 96 LQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFE 175 (494)
Q Consensus 96 le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G 175 (494)
+|+++++|+++++|++.++.....+++|+|||+|+++++++++..+.++.+..|.+..+++||+++ +|+++.++++.+|
T Consensus 82 l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G 160 (452)
T 2dgk_A 82 IDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWD 160 (452)
T ss_dssp HHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHcC
Confidence 999999999999999863100124899999999999999998876654443445332235899999 9999999999999
Q ss_pred CeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEEEeccccccccccc
Q 011057 176 VELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFL 255 (494)
Q Consensus 176 ~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~ 255 (494)
++++.||++++++.+|+++|+++|+++|++|++++|+|+||.++|+++|+++|++++++++.++|+|||+||++++.++.
T Consensus 161 ~~v~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~ 240 (452)
T 2dgk_A 161 VELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFV 240 (452)
T ss_dssp CEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHH
T ss_pred ceEEEEecCCCCCeECHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhh
Confidence 99999999864489999999999999999999999999999999999999999995322222999999999999876554
Q ss_pred CCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHh
Q 011057 256 YPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRL 335 (494)
Q Consensus 256 ~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l 335 (494)
.+...+++...++|++++++|||+++|+|+|+++++++..+...+...+.|+++....+++.++++...++++|++++.+
T Consensus 241 ~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~l 320 (452)
T 2dgk_A 241 APDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRL 320 (452)
T ss_dssp CTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHH
T ss_pred CccchhhcCCCCCcEEEECcccccCCCCCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHH
Confidence 44444555667899999999999999999999999876544344444566775543334456788877889999999999
Q ss_pred cHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecC---CCccEEEEEecCCC--CCCHHHHHHHHHhcCceeeccccCCC
Q 011057 336 GFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKD---EGVPLVAFSLKDNK--RHDEFEVAELLRRFGWIVPAYTMPAD 410 (494)
Q Consensus 336 ~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~---~~~~~v~f~~~~~~--~~~~~~l~~~L~~~Gi~v~~~~~~~~ 410 (494)
+.++++++.++..++++++.+.|+++++++++.+. +..++++|++.+.. .++..++.++|.++||.++.+..|..
T Consensus 321 g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~ 400 (452)
T 2dgk_A 321 GREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGE 400 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEEECSTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHHhcCCeeeeeeCCcc
Confidence 99999999999999999999999999889988652 36789999986421 24668999999999998876666655
Q ss_pred CCCceEEEEEeccCCChHHHHHHHHHHHHHHHHHhcCcc
Q 011057 411 AQHITVLRVVIREDFSRTLAERLVLDITKVLHELDSLPS 449 (494)
Q Consensus 411 ~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~~~~~ 449 (494)
..+..++|++++..+|.+++++|+++|+++++.+.+.+.
T Consensus 401 ~~~~~~lRis~~~~~t~e~id~li~~l~~~~~~~~~~~~ 439 (452)
T 2dgk_A 401 ATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHPK 439 (452)
T ss_dssp CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred cCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 556779999999999999999999999999988876543
No 3
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=100.00 E-value=4.5e-48 Score=399.27 Aligned_cols=414 Identities=18% Similarity=0.196 Sum_probs=324.1
Q ss_pred cccccCchHHhhcCCCCCCCCCCCCHHHHHHHHHHhhhh----cCCCCCcccccccCCCh--HHHHHHHHHHhcccCCCC
Q 011057 14 IHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELML----DGNPRLNLASFVTTWME--PECDKLMMAAINKNYVDM 87 (494)
Q Consensus 14 ~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~ 87 (494)
+.+...|+++++.++. .+|++|.+.+++++++.+.+.. +.+|++ .++++.+.. ..+.+++..+++.+...|
T Consensus 29 v~~~~~p~~l~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~l~~~~n~~~~~~ 105 (475)
T 3k40_A 29 VLPEVKPGYLKPLIPD-AAPEKPEKWQDVMQDIERVIMPGVTHWHSPKF--HAYFPTANSYPAIVADMLSGAIACIGFTW 105 (475)
T ss_dssp SSCSSCTTCSGGGSCS-SCCSSCCCHHHHHHHHHHHTGGGCCCTTCTTB--CCSSCCCCCHHHHHHHHHHHHHCCCSSSC
T ss_pred CCCCCCHHHHHHhcCC-CCCCCCCCHHHHHHHHHHHHhccCCCCCCcCc--eeeCCCCCcHHHHHHHHHHHHhCccccCc
Confidence 5667788999999998 8999999999999999998753 346765 566655443 357899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCCCCC----CCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCC------CCCeE
Q 011057 88 DEYPVTTELQNRCVNIIARLFNAPLED----SETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPF------DKPNI 157 (494)
Q Consensus 88 ~~~~~~~~le~~~~~~la~l~g~~~~~----~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~------~~~~v 157 (494)
..+|+..++|+++.+|+++++|.+.++ .....+++|+|||+||++++++++.++..+.+..|.+. .+.+|
T Consensus 106 ~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v 185 (475)
T 3k40_A 106 IASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVG 185 (475)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEE
T ss_pred cCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEE
Confidence 999999999999999999999998531 01136899999999999999999887655433223211 12478
Q ss_pred EeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhC------CeEEEEeeCCCCcccccCHHHHHHHHHHh
Q 011057 158 VTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDEN------TICVAAILGSTLNGEFEDVKLLNDLLAEK 231 (494)
Q Consensus 158 i~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~------t~~vv~~~~~~~tG~~~~l~~I~~la~~~ 231 (494)
+++..+|+++.+++++.|++++.||++++ + +|+++|+++|+++ +.+|++++++|++|.++|+++|+++|++|
T Consensus 186 i~s~~~H~s~~~~~~~~g~~~~~v~~d~~-~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~ 263 (475)
T 3k40_A 186 YCSDQAHSSVERAGLLGGVKLRSVQSENH-R-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKH 263 (475)
T ss_dssp EEETTSCHHHHHHHHHHTCEEEEECCBTT-B-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHT
T ss_pred EECCCchHHHHHHHHHcCCceEEEECCCC-C-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHh
Confidence 99999999999999999999999999875 7 9999999999865 67899999999999999999999999999
Q ss_pred hcccCCCceEEEecccccccccccCCcccccc-cCCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccccccCCCCCC
Q 011057 232 NKETGWDTPIHVDAASGGFIAPFLYPELEWDF-RLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGAD 310 (494)
Q Consensus 232 ~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~ 310 (494)
|+|+|||+||+++.. ..+.....+ ++..+|++++++|||+++|.|+|+++++++..+...+...+.|+...
T Consensus 264 ------~~~lhvD~A~~~~~~--~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~ 335 (475)
T 3k40_A 264 ------NLWIHVDAAYAGSAF--ICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHD 335 (475)
T ss_dssp ------TCEEEEECTTGGGGG--GSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC--------------
T ss_pred ------CCeEEEeHHhHHHHH--hCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccCCC
Confidence 999999999998643 333333222 33467999999999999999999999998766555444555666432
Q ss_pred C-------CCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccEEEEEecCC
Q 011057 311 Q-------PTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDN 383 (494)
Q Consensus 311 ~-------~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~ 383 (494)
. ..+++.++++ ..++++|++++.+|.+|+++++++..++++++.++|+++++++++.++ ..++++|++.+.
T Consensus 336 ~~~~~~~~~~~~~~~sr~-~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~-~~~iv~f~~~~~ 413 (475)
T 3k40_A 336 MQGSAPDYRHWQIPLGRR-FRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEI-NMGLVCFRLKGS 413 (475)
T ss_dssp -------------CCCGG-GTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCC-BTTEEEEEESSC
T ss_pred cCCCCCCcccccccCCCc-ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC-ceEEEEEEeCCc
Confidence 1 1234556664 567899999999999999999999999999999999999889998765 689999998642
Q ss_pred CCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccC-CChHHHHHHHHHHHHHHHHHhc
Q 011057 384 KRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIRED-FSRTLAERLVLDITKVLHELDS 446 (494)
Q Consensus 384 ~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~-~t~~~id~~i~~l~~~~~~l~~ 446 (494)
+....++.++|.++|+++. .|+...+..++|++++.. +|.++|+++++.|+++.+++..
T Consensus 414 -~~~~~~l~~~L~~~g~~~~---~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~~~ 473 (475)
T 3k40_A 414 -NERNEALLKRINGRGHIHL---VPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEMEQ 473 (475)
T ss_dssp -HHHHHHHHHHHHHHTSCBC---EEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred -hHHHHHHHHHHHhCCcEEE---EeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 2235789999999998742 233445678999998754 5889999999999998887643
No 4
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=100.00 E-value=7.8e-48 Score=398.46 Aligned_cols=414 Identities=18% Similarity=0.215 Sum_probs=332.0
Q ss_pred cccccCchHHhhcCCCCCCCCCCCCHHHHHHHHHHhhhh----cCCCCCcccccccCCC-h-HHHHHHHHHHhcccCCCC
Q 011057 14 IHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELML----DGNPRLNLASFVTTWM-E-PECDKLMMAAINKNYVDM 87 (494)
Q Consensus 14 ~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~-p~~~~~~~~~~~~~~~~~ 87 (494)
+.+...+++++..++. .+|++|.+.+++++++.+.+.. +.+|++ .+|++.+. . ..+.+++..+++.+...|
T Consensus 34 v~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ 110 (481)
T 4e1o_A 34 VTPDVQPGYLRAQLPE-SAPEDPDSWDSIFGDIERIIMPGVVHWQSPHM--HAYYPALTSWPSLLGDMLADAINCLGFTW 110 (481)
T ss_dssp SSCCCCTTTTGGGSCS-SCCSSCCCHHHHHHHHHHHTGGGCCCTTSTTB--CSSSCCCCCHHHHHHHHHHHHHCCCCSST
T ss_pred CCCCCCHHHHHHhcCC-CCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCe--eEeCCCCCCHHHHHHHHHHHHhCcccCCc
Confidence 5667788999999998 8999999999999999998753 346665 66665443 3 357899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCCCCCC-----CCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCC------CCCe
Q 011057 88 DEYPVTTELQNRCVNIIARLFNAPLEDS-----ETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPF------DKPN 156 (494)
Q Consensus 88 ~~~~~~~~le~~~~~~la~l~g~~~~~~-----~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~------~~~~ 156 (494)
..+|+..++|+++.+|+++++|++..+. ....+++|+|||+||+++++++++++..+.+..|.+. .+.+
T Consensus 111 ~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~ 190 (481)
T 4e1o_A 111 ASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLV 190 (481)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEE
T ss_pred CCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeE
Confidence 9999999999999999999999985320 1136899999999999999999988766543333221 2357
Q ss_pred EEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhC------CeEEEEeeCCCCcccccCHHHHHHHHHH
Q 011057 157 IVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDEN------TICVAAILGSTLNGEFEDVKLLNDLLAE 230 (494)
Q Consensus 157 vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~------t~~vv~~~~~~~tG~~~~l~~I~~la~~ 230 (494)
|+++..+|+++.+++++.|++++.||++++ +.+|+++|+++|+++ +.+|++++++|++|.++|+++|+++|++
T Consensus 191 v~~s~~~H~s~~~~~~~~g~~~~~v~~~~~-~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~ 269 (481)
T 4e1o_A 191 AYASDQAHSSVEKAGLISLVKMKFLPVDDN-FSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAR 269 (481)
T ss_dssp EEEETTSCHHHHHHHHHHTCEEEEECCCTT-SCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH
T ss_pred EEEcCcchHHHHHHHHhCCCceEEEEcCCC-CcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHH
Confidence 899999999999999999999999999764 899999999999865 6789999999999999999999999999
Q ss_pred hhcccCCCceEEEecccccccccccCCcccccc-cCCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccccccCCCCC
Q 011057 231 KNKETGWDTPIHVDAASGGFIAPFLYPELEWDF-RLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGA 309 (494)
Q Consensus 231 ~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~ 309 (494)
| |+|+|||+||+++.. ..+..+... +++.+|++++++|||+++|.|+|+++++++..+...+.....|+..
T Consensus 270 ~------~~~lhvDaA~g~~~~--~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~ 341 (481)
T 4e1o_A 270 E------GLWLHIDAAYAGTAF--LCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRH 341 (481)
T ss_dssp H------TCEEEEECTTGGGGG--GSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCC
T ss_pred c------CCeEEeehhhHHHHH--hChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccC
Confidence 9 999999999998753 333333222 3345799999999999999999999999876544444445566544
Q ss_pred CC-------CCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccEEEEEecC
Q 011057 310 DQ-------PTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKD 382 (494)
Q Consensus 310 ~~-------~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~ 382 (494)
.. ..+++.+++. ..++++|++++.+|.+|+++++++..++++++.+.|+++++|+++.++ ..++++|++.+
T Consensus 342 ~~~~~~~~~~~~~~~~~r~-~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~-~~~~v~f~~~~ 419 (481)
T 4e1o_A 342 ANSGVATDFMHWQIPLSRR-FRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKR-HLGLVVFRLKG 419 (481)
T ss_dssp TTTTTSCCGGGGSSSSCCC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCC-CSSEEEEEESS
T ss_pred cccCCCCCcccccccCCCC-ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-ceeEEEEEeCC
Confidence 21 1223445554 467899999999999999999999999999999999999889998765 68999999864
Q ss_pred CCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCC-ChHHHHHHHHHHHHHHHHHh
Q 011057 383 NKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDF-SRTLAERLVLDITKVLHELD 445 (494)
Q Consensus 383 ~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~-t~~~id~~i~~l~~~~~~l~ 445 (494)
. +....++.++|.++|+++. .|+...+..++|++++... |.++|+++++.|+++.+++.
T Consensus 420 ~-~~~~~~l~~~L~~~g~~~~---~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l~ 479 (481)
T 4e1o_A 420 P-NSLTENVLKEIAKAGRLFL---IPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLIL 479 (481)
T ss_dssp C-HHHHHHHHHHHHHHCSSBC---EEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred c-hHHHHHHHHHHHhCCeEEE---EeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 2 2235689999999997642 2333456789999987554 78999999999998887653
No 5
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=100.00 E-value=3.2e-45 Score=381.19 Aligned_cols=413 Identities=16% Similarity=0.201 Sum_probs=325.0
Q ss_pred cccccCchHHhhc---CCCCCCCCCCCCHHHHHHHHHHhhhh---cCCCCCcccccccCCCh-H-HHHHHHHHHhcccCC
Q 011057 14 IHSTFASRYVRNS---LPRFTMPENSIPKEAAYQIINDELML---DGNPRLNLASFVTTWME-P-ECDKLMMAAINKNYV 85 (494)
Q Consensus 14 ~~~~~~~~~~~~~---l~~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-p-~~~~~~~~~~~~~~~ 85 (494)
+.+...|++++.. ++. ++|+.|.+.+++++++++++.. ..+|++ .++++.+.. + .+.+++..+++.+..
T Consensus 49 ~~~~~~p~~l~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~f--~~~~~~~~~~~~~~~e~l~~~~~~~~~ 125 (511)
T 3vp6_A 49 VLDFHHPHQLLEGMEGFNL-ELSDHPESLEQILVDCRDTLKYGVRTGHPRF--FNQLSTGLDIIGLAGEWLTSTANTNMF 125 (511)
T ss_dssp SCCCCCHHHHHHCBTTBCC-CCCSSCCCHHHHHHHHHHHHHTSCCTTSTTE--ESSSSCCCCHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCHHHHHHHHhhCCC-CCCCCCCCHHHHHHHHHHHhhccCCCCCCCc--eEeecCCCcHHHHHHHHHHHHhccCCC
Confidence 4556779999988 666 8999999999999999887753 345654 666665543 3 467999999999988
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCC-CCCeEEeCCCcc
Q 011057 86 DMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPF-DKPNIVTGANVQ 164 (494)
Q Consensus 86 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~-~~~~vi~~~~~h 164 (494)
.|..+|+..++|+++++|+++++|++.+ ...+++|+|||+|++.++.+++.++.+..+..|... .+.+|+++..+|
T Consensus 126 ~~~~~p~~~~le~~~~~~l~~~~g~~~~---~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H 202 (511)
T 3vp6_A 126 TYEIAPVFVLMEQITLKKMREIVGWSSK---DGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSH 202 (511)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHHHTCCSS---SCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSC
T ss_pred CcccCchHHHHHHHHHHHHHHHhCCCCC---CCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCch
Confidence 9999999999999999999999999842 246999999999999999999876533222334321 234789999999
Q ss_pred hHHHHHHHHcCC---eeEEEeccCCccccCHHHHHHhhhhC------CeEEEEeeCCCCcccccCHHHHHHHHHHhhccc
Q 011057 165 VCWEKFARYFEV---ELKEVKLSEGYYVMDPVKAVEMVDEN------TICVAAILGSTLNGEFEDVKLLNDLLAEKNKET 235 (494)
Q Consensus 165 ~s~~~~~~~~G~---~v~~v~~~~~~~~~d~~~L~~~i~~~------t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~ 235 (494)
+++.++++.+|+ +++.|+++++ +.+|+++|+++|+++ |++|++++++|++|.++|+++|+++|++|
T Consensus 203 ~s~~~~~~~~g~g~~~~~~v~~d~~-~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~---- 277 (511)
T 3vp6_A 203 YSIKKAGAALGFGTDNVILIKCNER-GKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKY---- 277 (511)
T ss_dssp THHHHHHHHTTSCGGGEEEECBCTT-SCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHH----
T ss_pred HHHHHHHHHcCCCCCcEEEeecCCC-CccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHc----
Confidence 999999999999 8999999865 899999999999875 88999999999999999999999999999
Q ss_pred CCCceEEEecccccccccccCCcccccc-cCCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccccccCCCCCCCC--
Q 011057 236 GWDTPIHVDAASGGFIAPFLYPELEWDF-RLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQP-- 312 (494)
Q Consensus 236 ~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~-- 312 (494)
|+|+|||+||+++.+ ..++.+..+ +..++|++++++|||+++|.|+|+++++++..+...+...+.|+.....
T Consensus 278 --~~~lhvD~a~~~~~~--~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~ 353 (511)
T 3vp6_A 278 --NLWLHVDAAWGGGLL--MSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHY 353 (511)
T ss_dssp --TCEEEEEETTGGGGG--GCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSS
T ss_pred --CCEEEEEccchhhHh--hChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCccccc
Confidence 999999999998765 344444444 3457899999999999999999999999876554444445566643221
Q ss_pred -------CcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeec-CCCccEEEEEecCCC
Q 011057 313 -------TFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSK-DEGVPLVAFSLKDNK 384 (494)
Q Consensus 313 -------~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~-~~~~~~v~f~~~~~~ 384 (494)
..++.++++ ..++++|++++.+|.+|++++++++.++++++.+.|+++++|+++.+ ++..++++|++.+.
T Consensus 354 ~~~~~~~~~~~~~~r~-~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~- 431 (511)
T 3vp6_A 354 DVSYDTGDKAIQCGRH-VDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQ- 431 (511)
T ss_dssp CGGGCCGGGSSCSSCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCG-
T ss_pred ccccCccCCCCCCCCc-hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCc-
Confidence 123445554 46789999999999999999999999999999999999988999873 23678899987543
Q ss_pred CCC---------------HHHHHHHHHhcCceeeccccCCCCCCceEEEEEe-ccCCChHHHHHHHHHHHHHHHHHh
Q 011057 385 RHD---------------EFEVAELLRRFGWIVPAYTMPADAQHITVLRVVI-REDFSRTLAERLVLDITKVLHELD 445 (494)
Q Consensus 385 ~~~---------------~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~-~~~~t~~~id~~i~~l~~~~~~l~ 445 (494)
+.+ ..++.++|.++|+++..+.. ...+..++|+++ +..++.++|+++++.|+++-+.+.
T Consensus 432 ~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~--~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~~ 506 (511)
T 3vp6_A 432 SLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQP--QGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDLH 506 (511)
T ss_dssp GGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEE--ETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC---
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEE--eCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhhh
Confidence 111 23688999999987544221 123446899999 678888888888877777655543
No 6
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=100.00 E-value=1.3e-44 Score=375.52 Aligned_cols=415 Identities=20% Similarity=0.226 Sum_probs=315.7
Q ss_pred cccccCchHHhhcCCCCCCCCCCCCHHHHHHHHHHhhhh----cCCCCCcccccccCCCh-H-HHHHHHHHHhcccCCCC
Q 011057 14 IHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELML----DGNPRLNLASFVTTWME-P-ECDKLMMAAINKNYVDM 87 (494)
Q Consensus 14 ~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-p-~~~~~~~~~~~~~~~~~ 87 (494)
+.+...+++++..++. .+|+.|.+.+++++.+++.+.. +.+|++ .+|++.... + .+.+++..+++.+...|
T Consensus 29 ~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ 105 (486)
T 1js3_A 29 VYPDVQPGYLRPLIPA-TAPQEPDTFEDILQDVEKIIMPGVTHWHSPYF--FAYFPTASSYPAMLADMLCGAIGCIGFSW 105 (486)
T ss_dssp SSCCCCTTCSGGGSCS-SCCSSCCCHHHHHHHHHHTTGGGCCCTTSTTB--CSSSCCCCCHHHHHHHHHHHHHCCCCSSG
T ss_pred CCCCCCHHHHHHhccc-cCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCc--eEeCCCCCCHHHHHHHHHHHHhCcCcccc
Confidence 4555678899999998 8999999999999999987643 235654 555555443 3 48899999998888888
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCCCCCC----CCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCC------CCCeE
Q 011057 88 DEYPVTTELQNRCVNIIARLFNAPLEDS----ETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPF------DKPNI 157 (494)
Q Consensus 88 ~~~~~~~~le~~~~~~la~l~g~~~~~~----~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~------~~~~v 157 (494)
..+|...++|+++++|+++++|++.++. ....+++|+|||+||++++.+++..+.++.+..+... .+..|
T Consensus 106 ~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v 185 (486)
T 1js3_A 106 AASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVA 185 (486)
T ss_dssp GGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEE
T ss_pred ccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEE
Confidence 8899999999999999999999985210 0135899999999999999998765433221111000 01247
Q ss_pred EeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCC------eEEEEeeCCCCcccccCHHHHHHHHHHh
Q 011057 158 VTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENT------ICVAAILGSTLNGEFEDVKLLNDLLAEK 231 (494)
Q Consensus 158 i~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t------~~vv~~~~~~~tG~~~~l~~I~~la~~~ 231 (494)
+++..+|+++.++++.+|++++.||+++ ++.+|+++|+++|++++ .+|++++|+|++|.++|+++|+++|+++
T Consensus 186 ~~s~~~h~s~~~~~~~~G~~v~~v~~d~-~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~ 264 (486)
T 1js3_A 186 YASDQAHSSVERAGLIGGVKLKAIPSDG-KFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEE 264 (486)
T ss_dssp EEETTCCHHHHHHHHHHTCEEEEECCCT-TSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHT
T ss_pred EECCCCcHHHHHHHHhCCCceEEeecCC-CCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHc
Confidence 8899999999999999999999999975 48999999999998765 3899999999999999999999999999
Q ss_pred hcccCCCceEEEecccccccccccCCcccccc-cCCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccccccCCCCCC
Q 011057 232 NKETGWDTPIHVDAASGGFIAPFLYPELEWDF-RLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGAD 310 (494)
Q Consensus 232 ~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~ 310 (494)
|+|+|||+||+++.. ..+.....+ ++.++|++++++|||+++|.|+|+++++++..+...+...+.|+...
T Consensus 265 ------~~~lhvD~a~g~~~~--~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~~~~yl~~~ 336 (486)
T 1js3_A 265 ------DIWLHVDAAYAGSAF--ICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHS 336 (486)
T ss_dssp ------TCEEEEECTTGGGGG--GSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC---------
T ss_pred ------CCEEEEehhhHHHHH--HCHHHHHHhcCccccCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcCCchhhCCC
Confidence 999999999998754 233333222 34579999999999999999999999987654333333334555331
Q ss_pred C------C---CcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccEEEEEec
Q 011057 311 Q------P---TFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLK 381 (494)
Q Consensus 311 ~------~---~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~ 381 (494)
. . .+.+.+++. ..++++|++++.+|.+|++++.++..++++++.+.|+++++++++.++ ..++++|++.
T Consensus 337 ~~~~~~~~~~~~~~~~~~rr-~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-~~~~v~f~~~ 414 (486)
T 1js3_A 337 HQGSGLITDYRHWQLPLGRR-FRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEV-TLGLVCFRLK 414 (486)
T ss_dssp ---CCSCCCGGGSSSCSCCC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCC-CSSEEEEEES
T ss_pred cccccCCCCccccCCCCCCc-hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-ceeEEEEEec
Confidence 1 0 122234443 357899999999999999999999999999999999999889998755 5789999986
Q ss_pred CCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEec-cCCChHHHHHHHHHHHHHHHHHhc
Q 011057 382 DNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIR-EDFSRTLAERLVLDITKVLHELDS 446 (494)
Q Consensus 382 ~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~-~~~t~~~id~~i~~l~~~~~~l~~ 446 (494)
+.... ..++.++|.++|+++.. ++...+..++|++++ ..+|.++++++++.|+++++++.+
T Consensus 415 ~~~~~-~~~l~~~L~~~g~~~~~---~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~~~~ 476 (486)
T 1js3_A 415 GSDGL-NEALLERINSARKIHLV---PCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAELLA 476 (486)
T ss_dssp SCHHH-HHHHHHHHHHHTSCBCE---EEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred ChHHH-HHHHHHHHHhcCCEEEE---EEEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 42111 46899999999976422 222345678999974 457889999999999999887754
No 7
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=100.00 E-value=2.2e-43 Score=367.73 Aligned_cols=411 Identities=16% Similarity=0.183 Sum_probs=315.8
Q ss_pred cccccCchHHhhc---CCCCCCCCCCCCHHHHHHHHHHhhhh---cCCCCCcccccccCCChHH--HHHHHHHHhcccCC
Q 011057 14 IHSTFASRYVRNS---LPRFTMPENSIPKEAAYQIINDELML---DGNPRLNLASFVTTWMEPE--CDKLMMAAINKNYV 85 (494)
Q Consensus 14 ~~~~~~~~~~~~~---l~~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~ 85 (494)
+.+...|++++.. ++. ++|+.|.+.+++++++++.+.. .++|++ .++++++..|. +.+++..+++.+..
T Consensus 46 ~~~~~~p~~l~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~l~~~~n~~~~ 122 (504)
T 2okj_A 46 VLDFHHPHQLLEGMEGFNL-ELSDHPESLEQILVDCRDTLKYGVRTGHPRF--FNQLSTGLDIIGLAGEWLTSTANTNMF 122 (504)
T ss_dssp SCCCCCHHHHHSCBTTBCC-CCCSSCCCHHHHHHHHHHHHHTSCCTTCTTE--ESSSSCCCCHHHHHHHHHHHHHCCBSS
T ss_pred CCCCCCHHHHHHHhhccCC-CCCCCCCCHHHHHHHHHHHhhccCCCCCCCE--EEEccCCCCHHHHHHHHHHHhhccCCC
Confidence 5666688999988 776 8999999999999999887653 235654 56666665553 46888888898888
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCC-CCeEEeCCCcc
Q 011057 86 DMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFD-KPNIVTGANVQ 164 (494)
Q Consensus 86 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~-~~~vi~~~~~h 164 (494)
.|..+|...++|+++++|+++++|++.+ ...+++|+|||+|+++++++++..+.+..+..|.... +.+|+++..+|
T Consensus 123 ~~~~~~~~~~le~~~~~~la~~~g~~~~---~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h 199 (504)
T 2okj_A 123 TYEIAPVFVLMEQITLKKMREIVGWSSK---DGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSH 199 (504)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHHHTCCSS---SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSC
T ss_pred chhhChHHHHHHHHHHHHHHHHhCCCCC---CCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcch
Confidence 8888899999999999999999999731 2469999999999999999987643221111231111 23789999999
Q ss_pred hHHHHHHHHcCC---eeEEEeccCCccccCHHHHHHhhhh------CCeEEEEeeCCCCcccccCHHHHHHHHHHhhccc
Q 011057 165 VCWEKFARYFEV---ELKEVKLSEGYYVMDPVKAVEMVDE------NTICVAAILGSTLNGEFEDVKLLNDLLAEKNKET 235 (494)
Q Consensus 165 ~s~~~~~~~~G~---~v~~v~~~~~~~~~d~~~L~~~i~~------~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~ 235 (494)
+++.++++.+|+ +++.||++++ +.+|+++|+++|++ +|++|++++++|++|.++|+++|+++|+++
T Consensus 200 ~s~~~~~~~~g~g~~~v~~v~~~~~-~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~---- 274 (504)
T 2okj_A 200 YSIKKAGAALGFGTDNVILIKCNER-GKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKY---- 274 (504)
T ss_dssp THHHHHHHHTTSCGGGEEEECBCTT-SCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHH----
T ss_pred HHHHHHHHHcCCCcccEEEEecCCC-CCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHc----
Confidence 999999999988 7899998764 89999999999987 588999999999999999999999999999
Q ss_pred CCCceEEEecccccccccccCCccccccc-CCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccccccCCCCCCCC--
Q 011057 236 GWDTPIHVDAASGGFIAPFLYPELEWDFR-LPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQP-- 312 (494)
Q Consensus 236 ~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~-- 312 (494)
|+|+|||+||+++.. ..++....+. +.++|++++++|||+++|.|+|+++++++..+...+...+.|+.+...
T Consensus 275 --g~~lhvD~a~~~~~~--~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 350 (504)
T 2okj_A 275 --NLWLHVDAAWGGGLL--MSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQY 350 (504)
T ss_dssp --TCEEEEEETTGGGGG--GCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSS
T ss_pred --CCEEEEehhhhhHHH--hCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccc
Confidence 999999999998764 3333333442 347999999999999999999999998865443333344566633211
Q ss_pred -------CcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeec-CCCccEEEEEecCCC
Q 011057 313 -------TFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSK-DEGVPLVAFSLKDNK 384 (494)
Q Consensus 313 -------~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~-~~~~~~v~f~~~~~~ 384 (494)
.+.+.++|. ...+++|++++.++.+|++++.++..++++++.+.|+++++++++.+ ++..++++|++.+..
T Consensus 351 ~~~~~~~~~~~~~~rr-~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~ 429 (504)
T 2okj_A 351 DVSYDTGDKAIQCGRH-VDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQS 429 (504)
T ss_dssp CGGGCCGGGSSCSSCB-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGG
T ss_pred cCcCCcccCCCCCCCC-ccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCcc
Confidence 112234443 24678999999999999999999999999999999999988999863 126788899874321
Q ss_pred --CC------------CHHHHHHHHHhcCceeeccccCCCCCC-ceEEEEEec-cCCChHHHHHHHHHHHHHHHH
Q 011057 385 --RH------------DEFEVAELLRRFGWIVPAYTMPADAQH-ITVLRVVIR-EDFSRTLAERLVLDITKVLHE 443 (494)
Q Consensus 385 --~~------------~~~~l~~~L~~~Gi~v~~~~~~~~~~~-~~~lRvs~~-~~~t~~~id~~i~~l~~~~~~ 443 (494)
+. ...++.++|.++|+++..... ..+ ..++|++++ ..+|.++++++++.|++++++
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~---~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 501 (504)
T 2okj_A 430 LRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQP---QGDKANFFRMVISNPAATQSDIDFLIEEIERLGQD 501 (504)
T ss_dssp GSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEE---ETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeE---ECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 00 135788999999975432211 123 368999996 788999999999988887654
No 8
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=100.00 E-value=5.7e-42 Score=357.86 Aligned_cols=408 Identities=15% Similarity=0.168 Sum_probs=306.8
Q ss_pred cccccCchHHhhcCCCCCCCCCCCCHHHHHHHHHHhhhhc---CCCCCcccccccCCChHH--HHHHHHHHhcccCCCCC
Q 011057 14 IHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLD---GNPRLNLASFVTTWMEPE--CDKLMMAAINKNYVDMD 88 (494)
Q Consensus 14 ~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~ 88 (494)
+.+...|++++..++. ++|+.|++.+++++++++.+... ++|.+ .++.+++..|. +.+++..+++.+...|.
T Consensus 65 v~~~~~p~~l~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~ 141 (515)
T 2jis_A 65 VCEWKEPEELKQLLDL-ELRSQGESQKQILERCRAVIRYSVKTGHPRF--FNQLFSGLDPHALAGRIITESLNTSQYTYE 141 (515)
T ss_dssp SCCCCCHHHHHHHHCC-CCCSSCCCHHHHHHHHHHHHHHSCCTTSTTE--ESSSCCCCCHHHHHHHHHHHHHCCCTTCTT
T ss_pred CCCCCCHHHHHhhccc-CCCCCCCCHHHHHHHHHHHhcCCCCCCCCCe--EEEeeCCCCHHHHHHHHHHHHhccCCCchh
Confidence 5566788999988886 89999999999999998876532 35543 55555555443 45778777787777888
Q ss_pred CChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCC-CCCCeEEeCCCcchHH
Q 011057 89 EYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKP-FDKPNIVTGANVQVCW 167 (494)
Q Consensus 89 ~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~-~~~~~vi~~~~~h~s~ 167 (494)
.+|+..++|+++++|+++++|++. ..+++|+|||+|+++++.+++..+.+..+..|.. ..+.+|+++..+|+++
T Consensus 142 ~s~~~~~le~~~~~~la~l~g~~~-----~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~ 216 (515)
T 2jis_A 142 IAPVFVLMEEEVLRKLRALVGWSS-----GDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSI 216 (515)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCSS-----CEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHH
T ss_pred hchHHHHHHHHHHHHHHHHhCCCC-----CCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHH
Confidence 899999999999999999999974 4599999999999999999876432110111210 0123789999999999
Q ss_pred HHHHHHcCC---eeEEEeccCCccccCHHHHHHhhhh------CCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCC
Q 011057 168 EKFARYFEV---ELKEVKLSEGYYVMDPVKAVEMVDE------NTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWD 238 (494)
Q Consensus 168 ~~~~~~~G~---~v~~v~~~~~~~~~d~~~L~~~i~~------~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~ 238 (494)
.++++.+|+ +++.||++++ +.+|+++|+++|++ +|++|++++++|++|.++|+++|+++|+++ |
T Consensus 217 ~~~~~~~g~g~~~v~~v~~~~~-~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~------g 289 (515)
T 2jis_A 217 QKGAAFLGLGTDSVRVVKADER-GKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRH------G 289 (515)
T ss_dssp HHHHHHTTSCGGGEEEECBCTT-SCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHH------T
T ss_pred HHHHHHcCCCCCcEEEEecCCC-CcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHc------C
Confidence 999999998 8999999764 89999999999986 488999999999999999999999999999 9
Q ss_pred ceEEEecccccccccccCCcccccc-cCCCceEEEEcCcccCCcCCceEEEEEeCC-CCcccccccccCCCCCCC-----
Q 011057 239 TPIHVDAASGGFIAPFLYPELEWDF-RLPLVKSINVSGHKYGLVYAGIGWVIWRNK-EDLPEELIFHINYLGADQ----- 311 (494)
Q Consensus 239 ~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~-~~~~~~~~~~~~y~~~~~----- 311 (494)
+|+|||+||+++.. ..+.....+ ++.++|++++++|||+++|.|+|+++++++ ..+...+...+.|+.+..
T Consensus 290 ~~l~vD~a~~~~~~--~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~ 367 (515)
T 2jis_A 290 LWLHVDAAWGGSVL--LSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDV 367 (515)
T ss_dssp CEEEEEETTGGGGG--GCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCG
T ss_pred CeEEEehhhhhHHH--hChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccc
Confidence 99999999998865 233333333 234789999999999999999999999887 443332333445553211
Q ss_pred ----CCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccEEEEEecCC--CC
Q 011057 312 ----PTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDN--KR 385 (494)
Q Consensus 312 ----~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~--~~ 385 (494)
...++..++. ...+++|++++.+|.+|++++.++..++++++.+.|+++++++++.++ ..++++|++.+. .+
T Consensus 368 ~~~~~~~~~~~~rr-~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~-~~~~v~f~~~p~~~~~ 445 (515)
T 2jis_A 368 ALDTGDKVVQCGRR-VDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEP-EFVNVCFWFVPPSLRG 445 (515)
T ss_dssp GGCCGGGCSCSSCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCC-SSSEEEEEECCGGGTT
T ss_pred cCCCCCCCCCCCCc-ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC-CeeEEEEEEeCccccc
Confidence 0112233332 246789999999999999999999999999999999999889998765 567889987432 01
Q ss_pred ----CC--------HHHHHHHHHhcCceeeccccCCCCCCceEEEEEe-ccCCChHHHHHHHHHHHHHHH
Q 011057 386 ----HD--------EFEVAELLRRFGWIVPAYTMPADAQHITVLRVVI-REDFSRTLAERLVLDITKVLH 442 (494)
Q Consensus 386 ----~~--------~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~-~~~~t~~~id~~i~~l~~~~~ 442 (494)
.+ ...+.++|.++|+++..... ......++|+++ +..+|.++++++++.|+++++
T Consensus 446 ~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~--~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~ 513 (515)
T 2jis_A 446 KQESPDYHERLSKVAPVLKERMVKEGSMMIGYQP--HGTRGNFFRVVVANSALTCADMDFLLNELERLGQ 513 (515)
T ss_dssp CTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEE--ETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred cccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEE--ECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 11 11367888899986532211 012346899999 788999999999999987764
No 9
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=100.00 E-value=1.2e-41 Score=354.14 Aligned_cols=407 Identities=18% Similarity=0.248 Sum_probs=305.1
Q ss_pred cccCchHHhhcCCCCCCCCCCCCHHHHHHHHHHhhhh----cCCCCCcccccccCCChHHH-HHHHHHHhcccCCCCCCC
Q 011057 16 STFASRYVRNSLPRFTMPENSIPKEAAYQIINDELML----DGNPRLNLASFVTTWMEPEC-DKLMMAAINKNYVDMDEY 90 (494)
Q Consensus 16 ~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~ 90 (494)
+-..+++++..++..++|+.|.+.+++++++.+.+.. ..+|.+ |..+.+++.++.+ .+++...++.+...|+.+
T Consensus 57 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-l~~~~~~~~~~~v~~~~~~~~~n~~~~~~~~~ 135 (497)
T 2qma_A 57 SGMDPKALEDAINAVDLDNKNAPLKSVIDDVAELVAKNAIFTQHPDC-IAHLHTPPLMPAVAAEAMIAALNQSMDSWDQA 135 (497)
T ss_dssp CCCCHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHTTTTSCCTTSTTB-CSSSCCCCBHHHHHHHHHHHHHCCCTTCGGGC
T ss_pred CCCCHHHHHHhccccCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCe-eEeCCCCCcHHHHHHHHHHHhhcccccchhhC
Confidence 3446788999998877899999999999999886642 334543 2333344445555 455566677777778888
Q ss_pred hhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHH-----HhcCCCC--CCCeEEeCCCc
Q 011057 91 PVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKR-----KAEGKPF--DKPNIVTGANV 163 (494)
Q Consensus 91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~-----~~~g~~~--~~~~vi~~~~~ 163 (494)
|...++|+++++|+++++|++.. ..+++|+|||+||.+++.+++..+..+. +..|... .+.+|+++..+
T Consensus 136 ~~~~~le~~~~~~la~~~g~~~~----~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~ 211 (497)
T 2qma_A 136 SSATYVEQKVVNWLCDKYDLSEK----ADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKS 211 (497)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTT----CEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTS
T ss_pred hHHHHHHHHHHHHHHHHhCCCCC----CCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCc
Confidence 99999999999999999999641 4599999999999999999876543211 1122211 12379999999
Q ss_pred chHHHHHHHHcCC---eeEEEeccCCccccCHHHHHHhhhhC----C--eEEEEeeCCCCcccccCHHHHHHHHHHhhcc
Q 011057 164 QVCWEKFARYFEV---ELKEVKLSEGYYVMDPVKAVEMVDEN----T--ICVAAILGSTLNGEFEDVKLLNDLLAEKNKE 234 (494)
Q Consensus 164 h~s~~~~~~~~G~---~v~~v~~~~~~~~~d~~~L~~~i~~~----t--~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~ 234 (494)
|+++.++++.+|. +++.+|++++ +.+|+++|+++|+++ + .+|++++++|++|.++|+++|+++|+++
T Consensus 212 h~s~~~~~~~~g~g~~~v~~v~~~~~-~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~--- 287 (497)
T 2qma_A 212 HFTVQKSASWMGLGEKAVMTVDANAD-GTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKH--- 287 (497)
T ss_dssp CTHHHHHHHHTTSCGGGEEEECBCTT-SSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHH---
T ss_pred hHHHHHHHHHcCCCcccEEEEecCCC-CcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHc---
Confidence 9999999999987 7899999864 899999999999764 3 4888999999999999999999999999
Q ss_pred cCCCceEEEecccccccccccCCcccccc-cCCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccccccCCCCCCC--
Q 011057 235 TGWDTPIHVDAASGGFIAPFLYPELEWDF-RLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQ-- 311 (494)
Q Consensus 235 ~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~-- 311 (494)
|+|+|||+||+++..+. + ....+ ++.++|++++++|||+++|.++|+++++++..+ ..+.....|+....
T Consensus 288 ---~~~l~vD~a~~~~~~~~--~-~~~~~~gi~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~-~~~~~~~~yl~~~~~~ 360 (497)
T 2qma_A 288 ---DMWMHVDGAYGGALILS--S-HKSRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNF-KFLLHHADYLNREHDE 360 (497)
T ss_dssp ---TCEEEEEETTGGGGGGS--T-TGGGGTTGGGCSEEEEETTTTTCCCSSCEEEEESCGGGG-GGGCC-----------
T ss_pred ---CCEEEEehhhhHHHHhC--c-chHhhcCcccCCEEEEcchhccCCCcceEEEEEeCHHHH-HHhcCCchhcCCcccc
Confidence 99999999999876432 2 22222 234789999999999999999999999887544 23333344543211
Q ss_pred ----CCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccEEEEEecCCCCCC
Q 011057 312 ----PTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHD 387 (494)
Q Consensus 312 ----~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~ 387 (494)
....+.++|. ...+++|++++.++.++++++.++..+++++|.+.|+++++++++.++ ..++++|++.+. +.+
T Consensus 361 ~~~~~~~~~~~~r~-~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-~~~~v~f~~~~~-~~~ 437 (497)
T 2qma_A 361 LPNLVDKSIATTKR-FDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEP-SLSTVLFRATHE-TAD 437 (497)
T ss_dssp ---------CCSCC-CTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCC-SSSEEEEEECCS-SSC
T ss_pred CCCccccCCCCCCc-hhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCC-CceEEEEEEcCC-ccC
Confidence 1122334443 456789999999999999999999999999999999999889987665 578999998643 112
Q ss_pred ----HHHHHHHHHhcCceeeccccCCCCCCceEEEEEe-ccCCChHHHHHHHHHHHHHHHHH
Q 011057 388 ----EFEVAELLRRFGWIVPAYTMPADAQHITVLRVVI-REDFSRTLAERLVLDITKVLHEL 444 (494)
Q Consensus 388 ----~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~-~~~~t~~~id~~i~~l~~~~~~l 444 (494)
..++.++|.++|+.+.... ...+..++|+++ +..+|.++++++++.|+++++++
T Consensus 438 ~~~l~~~l~~~l~~~G~~~~~~~---~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 438 LDELNKALRLEALTRGIAVLGET---IVDGKTALKFTILNPCLTTSDFESLLSKINMLAVEL 496 (497)
T ss_dssp HHHHHHHHHHHHHHHTSCBCEEE---EETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCEEEEee---EECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 2467788999999864322 234567899998 77899999999999999887653
No 10
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-40 Score=345.83 Aligned_cols=393 Identities=24% Similarity=0.391 Sum_probs=311.2
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhh-cCCCCC--cccccccCCChHHHHHHHHHHhcc----cCCCCCCChhhHHHHHHHHH
Q 011057 30 FTMPENSIPKEAAYQIINDELML-DGNPRL--NLASFVTTWMEPECDKLMMAAINK----NYVDMDEYPVTTELQNRCVN 102 (494)
Q Consensus 30 ~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~----~~~~~~~~~~~~~le~~~~~ 102 (494)
..+|+.|.+.+++++.+++.... +..... ++.+++... .+.+.+++.++++. +..+|..+|+..++|+++++
T Consensus 36 ~~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 114 (497)
T 3mc6_A 36 PQLPSNGIPQDDVIEELNKLNDLIPHTQWKEGKVSGAVYHG-GDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVS 114 (497)
T ss_dssp SSCCSSCCCHHHHHHHHHHHHHSSCCCCGGGTCBSSSCSCC-CHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCEeeecCCC-chHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHH
Confidence 37899999999999999988764 221111 123332222 35566666666555 77778889999999999999
Q ss_pred HHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEe
Q 011057 103 IIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVK 182 (494)
Q Consensus 103 ~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~ 182 (494)
|+++++|++.+ ...+++|+||++|+.++++++++....+ .| ..+++|+++.++|.++.++++..|++++.|+
T Consensus 115 ~la~~~g~~~~---~~~~~~~~ggt~a~~~a~~a~~~~~~~~---~g--~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~ 186 (497)
T 3mc6_A 115 MVLRMFNAPSD---TGCGTTTSGGTESLLLACLSAKMYALHH---RG--ITEPEIIAPVTAHAGFDKAAYYFGMKLRHVE 186 (497)
T ss_dssp HHHHHTTCCTT---TCCEEEESSHHHHHHHHHHHHHHHHHHH---SC--CSSCEEEEETTSCHHHHHHHHHSCCEEEEEC
T ss_pred HHHHHhCCCCC---CCeEEEcCcHHHHHHHHHHHHHHHHHhc---CC--CCCceEEEeCCccHHHHHHHHHcCCeEEEEe
Confidence 99999999821 1459999999999999999987653322 22 2246899999999999999999999999999
Q ss_pred ccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCC----c
Q 011057 183 LSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYP----E 258 (494)
Q Consensus 183 ~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~----~ 258 (494)
++++++.+|+++|++++++++++|++++++|++|.++|+++|+++|+++ |+|+|||+||+++..+|... .
T Consensus 187 ~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~l~~i~~la~~~------g~~livD~a~~~~~~~f~~~~~~~~ 260 (497)
T 3mc6_A 187 LDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKY------KLPLHVDSCLGSFIVSFMEKAGYKN 260 (497)
T ss_dssp BCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCSCTTTTTHHHHT------TCCEEEETTTTHHHHGGGTTTTCCS
T ss_pred cCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCCHHHHHHHHHHh------CCEEEEECcchhhhhhhhhhhcccC
Confidence 9874589999999999999999999999999999999999999999999 99999999999876553321 1
Q ss_pred c-cccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcH
Q 011057 259 L-EWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGF 337 (494)
Q Consensus 259 ~-~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~ 337 (494)
. ..++...++|++++++|||+++|.|+|+++++++............|.++......+.++++...++++|++++.++.
T Consensus 261 ~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~ 340 (497)
T 3mc6_A 261 LPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGE 340 (497)
T ss_dssp CCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHH
T ss_pred CccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhH
Confidence 1 234445689999999999999999999999877543222222334455444344456688888888999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh-CCCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceE
Q 011057 338 EGYRNVMENCHENAMVLKEGLEK-TGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITV 416 (494)
Q Consensus 338 ~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~ 416 (494)
++++++.++..++++++.+.|++ +++++++.++ ..++++|... +.+..++.++|.++||.++....| ..
T Consensus 341 ~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~-~~~~v~~~~~---~~~~~~l~~~L~~~Gi~v~~~~~~------~~ 410 (497)
T 3mc6_A 341 NGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNP-RYSVISFSSK---TLNIHELSDRLSKKGWHFNALQKP------VA 410 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCC-CSSEEEEECT---TTTHHHHHHHHHTTTCBCEECCSS------CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC-CeeEEEEeCC---CCCHHHHHHHHHhCCEEEecCCCC------Ce
Confidence 99999999999999999999999 6889988665 6788888853 357889999999999987654333 24
Q ss_pred EEEEeccCCChHHHHHHHHHHHHHHHHHhcCc
Q 011057 417 LRVVIREDFSRTLAERLVLDITKVLHELDSLP 448 (494)
Q Consensus 417 lRvs~~~~~t~~~id~~i~~l~~~~~~l~~~~ 448 (494)
+|++++ .+|.+++++++++|+++++++.+..
T Consensus 411 ~ri~~~-~~t~e~i~~~~~~L~~~l~~~~~~~ 441 (497)
T 3mc6_A 411 LHMAFT-RLSAHVVDEICDILRTTVQELKSES 441 (497)
T ss_dssp EEEECC-TTTTCTHHHHHHHHHHHHHHHTCC-
T ss_pred EEEEEe-CCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 799988 7899999999999999999887654
No 11
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.8e-37 Score=312.57 Aligned_cols=383 Identities=24% Similarity=0.338 Sum_probs=301.4
Q ss_pred CCCCCCCCHHHHHHHHHHhhhhcCCCC-CcccccccCCChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhC
Q 011057 31 TMPENSIPKEAAYQIINDELMLDGNPR-LNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFN 109 (494)
Q Consensus 31 ~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g 109 (494)
.+|+.+.+.+++++.+++....+.+.. -.+.++.+.+++|.+.+++.+++..+..++..+++..++++++++++++++|
T Consensus 4 ~lp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~ 83 (397)
T 3f9t_A 4 NMQEKGVSEKEILEELKKYRSLDLKYEDGNIFGSMCSNVLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLN 83 (397)
T ss_dssp SCCSSCCCHHHHHHHHHHHHTTSCCGGGTCBCSCSCCCCCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEecCCCcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhC
Confidence 578899999999999998765432211 1224444556678899999998887666666778889999999999999999
Q ss_pred CCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCC-CCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCcc
Q 011057 110 APLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKP-FDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYY 188 (494)
Q Consensus 110 ~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~-~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~ 188 (494)
.+. ..+++|+||++|+.+++.+++..+..++. .|.. ..+++|+++.++|.++..+++..|++++.+|++++ +
T Consensus 84 ~~~-----~~i~~~~ggt~a~~~~~~~~~~~~~~~~~-~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~ 156 (397)
T 3f9t_A 84 NKD-----AYGHIVSGGTEANLMALRCIKNIWREKRR-KGLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKED-Y 156 (397)
T ss_dssp CTT-----CEEEEESCHHHHHHHHHHHHHHHHHHHHH-TTCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCTT-S
T ss_pred CCC-----CCEEEecCcHHHHHHHHHHHHHHHHhhhh-hcccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeCCC-C
Confidence 975 45899999999999999998776543322 2222 12468999999999999999999999999999875 7
Q ss_pred ccCHHHHHHhhhh-CCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCC-------ccc
Q 011057 189 VMDPVKAVEMVDE-NTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYP-------ELE 260 (494)
Q Consensus 189 ~~d~~~L~~~i~~-~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~-------~~~ 260 (494)
.+|+++|++++++ ++++|++++++|+||.+.|+++|.++|+++ |+++|+|++|+++..++... ...
T Consensus 157 ~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~------~~~li~Dea~~~~~~~~~~~~~~~~~~~~~ 230 (397)
T 3f9t_A 157 TIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKEN------NIYIHVDAAFGGLVIPFLDDKYKKKGVNYK 230 (397)
T ss_dssp SBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCHHHHHHHHHHH------TCEEEEECTTGGGTGGGCCGGGCCTTCCCC
T ss_pred cCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCHHHHHHHHHHh------CCeEEEEccccchhhhhccccccccccccc
Confidence 8999999999999 899999999999999999999999999999 99999999999876544322 112
Q ss_pred ccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHH
Q 011057 261 WDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGY 340 (494)
Q Consensus 261 ~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~ 340 (494)
.++.. ++|++++++||++++|.++|+++++++... ..+.....|+.... ...+.+++++...++++++++.++..++
T Consensus 231 ~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 307 (397)
T 3f9t_A 231 FDFSL-GVDSITIDPHKMGHCPIPSGGILFKDIGYK-RYLDVDAPYLTETR-QATILGTRVGFGGACTYAVLRYLGREGQ 307 (397)
T ss_dssp CSGGG-TCSEEECCTTTTTCCCSSCEEEEESSGGGG-GGTCEECTTSSSSE-ECSSCSSCCSHHHHHHHHHHHHHHHHHH
T ss_pred ccccc-cCCeEEEccccccCCCCCceEEEEeCHHHH-HhhccCCccccCCC-ccccccccccchHHHHHHHHHHHhHHHH
Confidence 33444 799999999999999999999998776433 22222234433221 1123366666788899999999988999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEE
Q 011057 341 RNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVV 420 (494)
Q Consensus 341 ~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs 420 (494)
+++.++..++++++.+.|+++ +++++.++ ..++++|.+. +..++.+.|.++|+.+..... ..++|++
T Consensus 308 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~~~~------~~~~Ri~ 374 (397)
T 3f9t_A 308 RKIVNECMENTLYLYKKLKEN-NFKPVIEP-ILNIVAIEDE-----DYKEVCKKLRDRGIYVSVCNC------VKALRIV 374 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCBSSCC-SSSEEEEECT-----THHHHHHHHHHTTCBCEECSS------SSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCEEEcCC-CccEEEEEeC-----CHHHHHHHHHhCCeEEeccCC------CCEEEEE
Confidence 999999999999999999999 58876655 6788888763 267899999999998754321 3579999
Q ss_pred eccCCChHHHHHHHHHHHHHHH
Q 011057 421 IREDFSRTLAERLVLDITKVLH 442 (494)
Q Consensus 421 ~~~~~t~~~id~~i~~l~~~~~ 442 (494)
++..+++++++++++.|+++++
T Consensus 375 ~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 375 VMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp CCTTCCHHHHHHHHHHHHHHC-
T ss_pred EcCCCCHHHHHHHHHHHHHhhC
Confidence 9988999999999999988764
No 12
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=100.00 E-value=1.3e-37 Score=325.04 Aligned_cols=393 Identities=21% Similarity=0.312 Sum_probs=304.8
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhh----cCCCCCcccccccCCC---hHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHH
Q 011057 30 FTMPENSIPKEAAYQIINDELML----DGNPRLNLASFVTTWM---EPECDKLMMAAINKNYVDMDEYPVTTELQNRCVN 102 (494)
Q Consensus 30 ~~~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~ 102 (494)
..+|+.|++.+++++.+++++.. ..++.+ .+++.... .+.+.+++...++.+...+..+|+..++|+++++
T Consensus 69 ~~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~ 146 (514)
T 3mad_A 69 ARLPRAGLPRAEILAEIAAMGAAESPAWRDGYA--SGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVA 146 (514)
T ss_dssp SSCCSSCCCHHHHHHHHHHHHHHHHHHHHTTCB--SSSCSCCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhccCCCCCCCce--EEEecCCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHH
Confidence 46889999999999998887532 223333 33222221 2346666666777777788889999999999999
Q ss_pred HHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEe
Q 011057 103 IIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVK 182 (494)
Q Consensus 103 ~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~ 182 (494)
|+++++|.+.+. +...+++|+||++|+.+++++++.....+ .| ..+++|+++.++|.++.++++..|++++.++
T Consensus 147 ~la~~~g~~~~~-~~v~~~~t~ggt~a~~~al~a~~~~g~~~---~g--~~~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~ 220 (514)
T 3mad_A 147 MTAHMLGGDAAG-GTVCGTVTSGGTESLLLAMKTYRDWARAT---KG--ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTP 220 (514)
T ss_dssp HHHHHTTGGGGT-SCCEEEEESSHHHHHHHHHHHHHHHHHHH---HC--CSSCEEEEETTSCTHHHHHHHHHTCEEEEEC
T ss_pred HHHHHcCCCCcc-CCcceEEcCcHHHHHHHHHHHHHHHhhhh---cC--CCCCeEEEeCccchHHHHHHHHcCCeeEEee
Confidence 999999997310 01345999999999999999987653222 12 2346899999999999999999999999999
Q ss_pred ccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEEEecccccccccccC----Cc
Q 011057 183 LSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLY----PE 258 (494)
Q Consensus 183 ~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~----~~ 258 (494)
++++ +.+|+++|++++++++++|++++++|++|.++|+++|.++|+++ |+|+|+|+||+++..++.. +.
T Consensus 221 ~~~~-~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~------~i~livDea~~~~~~~~~~~~g~~~ 293 (514)
T 3mad_A 221 LDAD-YRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEH------GIGCHVDACLGGFILPWAERLGYPV 293 (514)
T ss_dssp BCTT-SCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCCHHHHHHHHHHH------TCEEEEECTTTTTTHHHHHHTTCCC
T ss_pred eCCC-CCCCHHHHHHHhccCCEEEEEeCCCCCCccccCHHHHHHHHHHh------CCeEEEecccccccchhHHhcCCCC
Confidence 9874 89999999999999999999999999999999999999999999 9999999999987653211 11
Q ss_pred ccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHh
Q 011057 259 LEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFE 338 (494)
Q Consensus 259 ~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~ 338 (494)
...++...++|++++++|||+++|.|+|+++++++............|.++......+.++++...++++|++++.++.+
T Consensus 294 ~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~ 373 (514)
T 3mad_A 294 PPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEE 373 (514)
T ss_dssp CCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred CcccccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHH
Confidence 12344456899999999999999999999999876433222222334444332233456788888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEE
Q 011057 339 GYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLR 418 (494)
Q Consensus 339 g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lR 418 (494)
+++++.++..++++++.+.|+++++++++.++ .+++.|... +.+..++.++|.++||.+.+... ...+|
T Consensus 374 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--~~~~~~~~~---~~~~~~l~~~L~~~Gi~v~g~~~------~~~~R 442 (514)
T 3mad_A 374 GYLDATRRILQAADRLKAGVRAIPSLKILGDP--LWVIAVASD---ELNIYQVMEEMAGRGWRLNGLHR------PPAFH 442 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC--SSEEEEECS---SSCHHHHHHHHHTTTCBCEEETT------TTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC--eEEEEEeCC---CCCHHHHHHHHHhcCCEeccCCC------CCeEE
Confidence 99999999999999999999999889987664 457777653 35788999999999998744322 23599
Q ss_pred EEecc-CCChHHHHHHHHHHHHHHHHHhcCc
Q 011057 419 VVIRE-DFSRTLAERLVLDITKVLHELDSLP 448 (494)
Q Consensus 419 vs~~~-~~t~~~id~~i~~l~~~~~~l~~~~ 448 (494)
++++. .+++++++++++.|+++++++.+.+
T Consensus 443 i~~~~~~~~~e~i~~~l~~L~~~l~~~~~~~ 473 (514)
T 3mad_A 443 VALTLRHTEPGVVDRFLADLQDAVAQVRAHP 473 (514)
T ss_dssp EECCGGGGSTTHHHHHHHHHHHHHHHHHHCT
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 99874 4456899999999999999887644
No 13
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=100.00 E-value=1.7e-35 Score=304.22 Aligned_cols=372 Identities=16% Similarity=0.147 Sum_probs=266.7
Q ss_pred hhcCCCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCcccccccCCChHHHHHHHHHHh-----cccC-----C----CCCC
Q 011057 24 RNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAI-----NKNY-----V----DMDE 89 (494)
Q Consensus 24 ~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-----~~~~-----~----~~~~ 89 (494)
...++...+|+.|++++++.+..++...++...+++..+ +++.++.+.+++.... +.+. . .+..
T Consensus 50 ~~~~~~~~lp~~g~~~~~i~~~~~~~~~~~~~~yld~aa--~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (456)
T 2z67_A 50 EDVFNHRKIPENGIDDEKIKLFLKFLSMMDTDKDPKSVR--IGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASG 127 (456)
T ss_dssp HHHHHHCSCCSSCCCHHHHHHHHHHHHTTBGGGCTTCEE--CSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHH
T ss_pred HHhhccCCCCCCCCCHHHHHHHHHHHHhccccccccccc--cccccccccccccCccccccCCCccHHHHHHhhCccccc
Confidence 345555689999999999988887776655555555444 3334444444443311 1110 0 1223
Q ss_pred ChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChh-HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHH
Q 011057 90 YPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSS-EAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWE 168 (494)
Q Consensus 90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt-~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~ 168 (494)
++...++++++++++++++|++. . +++|+||| .++.+++.+++... + +++|++++.+|.++.
T Consensus 128 ~~~~~~~~~~~~~~la~~~g~~~-----~-~~~t~g~te~a~~~al~~~~~~~-------~----~~~vi~~~~~h~s~~ 190 (456)
T 2z67_A 128 ASIMYALTNKILESFFKQLGLNV-----H-AIATPISTGMSISLCLSAARKKY-------G----SNVVIYPYASHKSPI 190 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCC-----E-EEEESSCHHHHHHHHHHHHHHHH-------C----CCEEEEECCCCHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCCC-----C-EEEeCcHHHHHHHHHHHHHHHhc-------C----CCEEEEECCCcHHHH
Confidence 34578899999999999999975 3 89999999 56666666654311 1 256888888999999
Q ss_pred HHHHHcCCeeEEEecc--CCccccCHHHHHHhh-h----hCCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceE
Q 011057 169 KFARYFEVELKEVKLS--EGYYVMDPVKAVEMV-D----ENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPI 241 (494)
Q Consensus 169 ~~~~~~G~~v~~v~~~--~~~~~~d~~~L~~~i-~----~~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l 241 (494)
++++..|++++.+++. ++++.+|+++|+++| + .++.+|+++.++|++|.++|+++|+++|+++ |+|+
T Consensus 191 ~~~~~~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~------g~~v 264 (456)
T 2z67_A 191 KAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENY------DIPH 264 (456)
T ss_dssp HHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHH------TCCE
T ss_pred HHHHHcCCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc------CCcE
Confidence 9999999999998873 235899999999999 5 3677788899999999999999999999999 9999
Q ss_pred EEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcc
Q 011057 242 HVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKG 321 (494)
Q Consensus 242 ~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~ 321 (494)
|||+||+.+..++. +.....+.. ++|++++++|||+++|.|+|+++++++..+.. ..+.|.+ .++
T Consensus 265 ~vD~A~~~~~~g~~-~~~~~~~~~-~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~---l~~~~~g----------~~~ 329 (456)
T 2z67_A 265 IINGAYAIQNNYYL-EKLKKAFKY-RVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKE---ISLSYPG----------RAS 329 (456)
T ss_dssp EEECTTTTTCHHHH-HHHHHHHTS-CCSEEEEEHHHHHCCCSSCEEEEESCHHHHHH---HHTTSCS----------CBC
T ss_pred EEECcchHHHHHhh-HHHHHhhCC-CCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhh---cCcCCCC----------CCC
Confidence 99999987643221 110111111 69999999999999999999999976533321 1233432 222
Q ss_pred hHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCC---CeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhc
Q 011057 322 SSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTG---RFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRF 398 (494)
Q Consensus 322 ~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~---~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~ 398 (494)
....+++|+++..++.++++++.++..++++++.++|++++ ++.++.+ . ++++|.+... + ...++.++|.++
T Consensus 330 ~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~--~-~~v~~~~~~~-~-~~~~l~~~L~~~ 404 (456)
T 2z67_A 330 ATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDV--E-SPIASCISVN-S-DPVEIAAKLYNL 404 (456)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCC--C-CSSEEEEECS-S-CHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCC--C-CeEEEEEecc-c-HHHHHHHHHHHc
Confidence 34578899999999999999999999999999999999984 4665543 3 7788887321 1 156899999999
Q ss_pred Ccee-ecc--------ccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHH
Q 011057 399 GWIV-PAY--------TMPADAQHITVLRVVIREDFSRTLAERLVLDITKVL 441 (494)
Q Consensus 399 Gi~v-~~~--------~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~ 441 (494)
|+.. +.. .... .....++|++++..+|++++|+++++|++++
T Consensus 405 gi~~~rv~~~~g~f~G~~~~-~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 405 RVTGPRGIKKTDHFGNCYLG-TYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp TEESCEEECTTCHHHHTCSS-CCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred CCCcceEEeecCcccccccc-ccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 8631 111 0000 1123579999998899999999999887654
No 14
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=100.00 E-value=1.1e-33 Score=292.18 Aligned_cols=406 Identities=13% Similarity=0.049 Sum_probs=285.3
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhhcCC---CCCcccccccCCChHHHHHHHHHHhcc-cCCCCC-CChhhHHHHHHHHHHH
Q 011057 30 FTMPENSIPKEAAYQIINDELMLDGN---PRLNLASFVTTWMEPECDKLMMAAINK-NYVDMD-EYPVTTELQNRCVNII 104 (494)
Q Consensus 30 ~~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~-~~~~~~~le~~~~~~l 104 (494)
+.+| +.++.++++.+.++...+.. ....++ .++.+..|.+.+.+.+.+.. ++..+. .+++..+++.++++++
T Consensus 40 ~~lp--~~~e~~~~~~~~~l~~~~~~~~~~~~~lg-~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l 116 (474)
T 1wyu_B 40 PRLP--EVDELTLVRHYTGLSRRQVGVDTTFYPLG-SCTMKYNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYL 116 (474)
T ss_dssp CCCC--CCCHHHHHHHHHHHHTTCCCTTTSCCCBT-TTCCCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHH
T ss_pred CCCC--CCCHHHHHHHHHHHHhCCCCcccCccccc-cccccCCHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHH
Confidence 3677 78999999999887754322 223344 45555556666666554322 222222 4778899999999999
Q ss_pred HHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEecc
Q 011057 105 ARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLS 184 (494)
Q Consensus 105 a~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~ 184 (494)
++++|++. .+++|+||++|+.+++++++..... .|....+++|+++.++|.++..+++..|++++.|+++
T Consensus 117 a~~~g~~~------~~~~~~ggt~a~~~al~~~~~~~~~----~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~ 186 (474)
T 1wyu_B 117 KALTGMDA------ITLEPAAGAHGELTGILIIRAYHED----RGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSG 186 (474)
T ss_dssp HHHHTCSE------EECCCSSHHHHHHHHHHHHHHHHHH----TTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBC
T ss_pred HHHHCCCc------eeecChHHHHHHHHHHHHHHHHHHh----cCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCC
Confidence 99999974 3668899999999888777543211 1210123489999999999999999999999999997
Q ss_pred CCccccCHHHHHHhhhhCCeEEEEeeCCCCcccc-cCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccc
Q 011057 185 EGYYVMDPVKAVEMVDENTICVAAILGSTLNGEF-EDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDF 263 (494)
Q Consensus 185 ~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~-~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~ 263 (494)
++ +.+|+++|++++++++++|+++++| ++|.+ +|+++|+++|+++ |+++|+|++|+.+..+... .
T Consensus 187 ~~-~~~d~~~L~~~i~~~t~~v~~~~pn-~~G~~~~~l~~i~~l~~~~------g~~li~Dea~~~~~~g~~~------~ 252 (474)
T 1wyu_B 187 PE-GEVDLEALKRELGPHVAALMLTNPN-TLGLFERRILEISRLCKEA------GVQLYYDGANLNAIMGWAR------P 252 (474)
T ss_dssp TT-SSBCHHHHHHHCSTTEEEEEECSSC-TTSCCCTTHHHHHHHHHHH------TCEEEEEGGGGGGTTTTCC------H
T ss_pred CC-CCcCHHHHHHhhCCCceEEEEECCC-CCcccCCCHHHHHHHHHHc------CCEEEEeCchhhhhccCCC------c
Confidence 64 7899999999999899999999885 79999 7999999999999 9999999999865432111 1
Q ss_pred cCCCceEEEEcCcccCCcCC-----ceEEEEEeCCCCcccccccc-c-----CCCCC-CC----CCcccccCcchHHHHH
Q 011057 264 RLPLVKSINVSGHKYGLVYA-----GIGWVIWRNKEDLPEELIFH-I-----NYLGA-DQ----PTFTLNFSKGSSQVIA 327 (494)
Q Consensus 264 ~~~~~D~~~~~~hK~l~~p~-----g~G~~~~~~~~~~~~~~~~~-~-----~y~~~-~~----~~~~~~~s~~~~~~~a 327 (494)
...++|++++++||++..|. |+|+++++++ .+ +.+... . .|... .. .... .++.+.....+
T Consensus 253 ~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~-l~-~~l~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~a 329 (474)
T 1wyu_B 253 GDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAH-LA-PYLPVPLVERGEEGFYLDFDRPKSIGRVR-SFYGNFLALVR 329 (474)
T ss_dssp HHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGG-GG-GGCCSCEEEECSSCEEEECCCTTCCCCSS-STTSCHHHHHH
T ss_pred ccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHH-HH-HhCCCCeeeccCCeeEecccCcccCcccc-cCcCcHHHHHH
Confidence 11268999999999998874 6899998764 22 222100 0 01000 00 0000 12233345566
Q ss_pred HHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeecccc
Q 011057 328 QYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTM 407 (494)
Q Consensus 328 ~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~ 407 (494)
.++++..+|.+++++..++..++++++.+.|+++ ++++..++.....+.+.+ ..+.+..++.++|.++|+.++...+
T Consensus 330 a~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~L~~~Gi~~~~~~~ 406 (474)
T 1wyu_B 330 AWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK-GYRVPYDGPSMHEFVAQP--PEGFRALDLAKGLLELGFHPPTVYF 406 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCSSCSSCCSCEEEBC--STTCCHHHHHHHHHHTTCCCCEESC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcEecCCCCcceEEEEEc--CCCCCHHHHHHHHHHCCcccccccc
Confidence 6777777788899999999999999999999998 587643322222233444 2345788999999999998754333
Q ss_pred CCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHHhcCccccccccccccCccCcccccccccccchhhhhhhcc-cc
Q 011057 408 PADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDSLPSKVLVPASEQNGRNGKKTEIETQREVTTYWRKFVSE-RK 486 (494)
Q Consensus 408 ~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 486 (494)
|. ....++|++++..++.++++++++.|++++++ ..+.++.+||+. +++|+ ++
T Consensus 407 ~~--~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~-----------~~~~l~~~p~~~-------------~~~~~~~~ 460 (474)
T 1wyu_B 407 PL--IVKEALMVEPTETEAKETLEAFAEAMGALLKK-----------PKEWLENAPYST-------------PVRRLDEL 460 (474)
T ss_dssp ST--TSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS-----------CHHHHHTCCCSS-------------SSCSBCHH
T ss_pred cc--ccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh-----------CchhhhcCCCCC-------------CcCccccc
Confidence 31 12457999999888999999999999887654 112333444444 56778 88
Q ss_pred cccCCCCC
Q 011057 487 ANNKNKIC 494 (494)
Q Consensus 487 ~~~~~~~~ 494 (494)
+++|+++|
T Consensus 461 ~~~~~~~~ 468 (474)
T 1wyu_B 461 RANKHPKL 468 (474)
T ss_dssp HHHHSCBC
T ss_pred ccccCcee
Confidence 99999988
No 15
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=100.00 E-value=5.4e-31 Score=263.77 Aligned_cols=342 Identities=15% Similarity=0.087 Sum_probs=254.3
Q ss_pred CCChHHHHHHHHHHhcccCCCCC-CC---hhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHH
Q 011057 66 TWMEPECDKLMMAAINKNYVDMD-EY---PVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKW 141 (494)
Q Consensus 66 ~~~~p~~~~~~~~~~~~~~~~~~-~~---~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~ 141 (494)
.+++|.+.+++.+.+.....+.. .+ ....++.+++++++++++|.++ ..+++|+|+++|+.+++.++...+
T Consensus 10 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----~~i~~~~g~~~a~~~~~~~~~~~~ 84 (382)
T 4hvk_A 10 KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGG-----GTVVFTSGATEANNLAIIGYAMRN 84 (382)
T ss_dssp CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTT-----EEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCc-----CeEEEECCchHHHHHHHHHhhhhh
Confidence 35667888888888765333221 12 3557788899999999999975 458999999999999988876321
Q ss_pred HHHHHhcCCCCCCCeEEeCCCcchHHHHHHHH---cCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccc
Q 011057 142 QNKRKAEGKPFDKPNIVTGANVQVCWEKFARY---FEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEF 218 (494)
Q Consensus 142 ~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~---~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~ 218 (494)
.. . +++|+++..+|+++..++.. .|++++.++++++ +.+|+++|++++++++++|++++++|+||.+
T Consensus 85 ~~----~-----gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~ 154 (382)
T 4hvk_A 85 AR----K-----GKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKY-GEVDVSFIDQKLRDDTILVSVQHANNEIGTI 154 (382)
T ss_dssp GG----G-----CCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTT-SCBCHHHHHHHCCTTEEEEECCSBCTTTCBB
T ss_pred cC----C-----CCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCC-CCcCHHHHHHHhccCceEEEEECCCCCceee
Confidence 11 1 26899999999988776555 5999999999865 7899999999999999999999999999999
Q ss_pred cCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCccc
Q 011057 219 EDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPE 298 (494)
Q Consensus 219 ~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~ 298 (494)
.|+++|.++|+++ ++ +++|++|+.+..++ ++...++|++++++||++ +|.|+|+++++++..+..
T Consensus 155 ~~~~~i~~l~~~~------~~-li~D~a~~~~~~~~-------~~~~~~~d~~~~s~~K~~-g~~g~g~~~~~~~~~~~~ 219 (382)
T 4hvk_A 155 QPVEEISEVLAGK------AA-LHIDATASVGQIEV-------DVEKIGADMLTISSNDIY-GPKGVGALWIRKEAKLQP 219 (382)
T ss_dssp CCHHHHHHHHSSS------SE-EEEECTTTBTTBCC-------CHHHHTCSEEEEESGGGT-SCTTCEEEEEETTCCCCC
T ss_pred CCHHHHHHHHHHc------CE-EEEEhHHhcCCCCC-------CchhcCCCEEEEeHHHhc-CCCceEEEEEcCccCcCc
Confidence 9999999999999 99 99999998754322 111125899999999974 677899999887642211
Q ss_pred ccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCC-C-ccEE
Q 011057 299 ELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDE-G-VPLV 376 (494)
Q Consensus 299 ~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~-~-~~~v 376 (494)
.+.+.........++.+.....++.+++..+ .++++++.++..++++++.+.|++++++++..++. . .+++
T Consensus 220 ------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 292 (382)
T 4hvk_A 220 ------VILGGGQENGLRSGSENVPSIVGFGKAAEIT-AMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNV 292 (382)
T ss_dssp ------SSCSSCTGGGTSCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEE
T ss_pred ------ccccCCCcCccccCCcCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEE
Confidence 1111111111112344455556666666644 46788899999999999999999998898875532 2 3578
Q ss_pred EEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCC----------------CceEEEEEeccCCChHHHHHHHHHHHHH
Q 011057 377 AFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQ----------------HITVLRVVIREDFSRTLAERLVLDITKV 440 (494)
Q Consensus 377 ~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~----------------~~~~lRvs~~~~~t~~~id~~i~~l~~~ 440 (494)
.|.+.+ .+..++.+.|.++||.+.......... ...++|++++..++.++++++++.|+++
T Consensus 293 ~~~~~~---~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~ 369 (382)
T 4hvk_A 293 NVRFSY---IEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGV 369 (382)
T ss_dssp EEEETT---CCHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred EEEECC---CCHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 888743 478899999999999875432111100 0468999999999999999999999999
Q ss_pred HHHHhcC
Q 011057 441 LHELDSL 447 (494)
Q Consensus 441 ~~~l~~~ 447 (494)
++++.+.
T Consensus 370 ~~~~~~~ 376 (382)
T 4hvk_A 370 IERLRSM 376 (382)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 9888764
No 16
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=100.00 E-value=1.9e-30 Score=260.16 Aligned_cols=342 Identities=15% Similarity=0.087 Sum_probs=251.6
Q ss_pred CCChHHHHHHHHHHhcccCCCCC-CC---hhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHH
Q 011057 66 TWMEPECDKLMMAAINKNYVDMD-EY---PVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKW 141 (494)
Q Consensus 66 ~~~~p~~~~~~~~~~~~~~~~~~-~~---~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~ 141 (494)
+++++.+.+++.+.+.....+.. .+ +...+...++++++++++|.++ ..+++|+||++|+.+++.++...+
T Consensus 10 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~-----~~v~~~~g~t~a~~~~~~~l~~~~ 84 (382)
T 4eb5_A 10 KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGG-----GTVVFTSGATEANNLAIIGYAMRN 84 (382)
T ss_dssp CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTT-----EEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCC-----CeEEEcCchHHHHHHHHHHHHhhc
Confidence 35678888888888764222211 12 2456778889999999999864 358999999999999988886321
Q ss_pred HHHHHhcCCCCCCCeEEeCCCcchHHHHHHHH---cCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccc
Q 011057 142 QNKRKAEGKPFDKPNIVTGANVQVCWEKFARY---FEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEF 218 (494)
Q Consensus 142 ~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~---~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~ 218 (494)
.. . +++|+++.++|.++..++.. .|++++.++++++ +.+|+++|++++++++++|++++++||||.+
T Consensus 85 ~~----~-----gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~ 154 (382)
T 4eb5_A 85 AR----K-----GKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKY-GEVDVSFIDQKLRDDTILVSVQHANNEIGTI 154 (382)
T ss_dssp GG----G-----CCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTT-SCBCHHHHHHHCCTTEEEEECCSBCTTTCBB
T ss_pred cC----C-----CCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCC-CccCHHHHHHHhcCCCeEEEEeccCCCcccc
Confidence 10 1 25899999999988777654 6999999999864 7899999999998889999999999999999
Q ss_pred cCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCccc
Q 011057 219 EDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPE 298 (494)
Q Consensus 219 ~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~ 298 (494)
.|+++|.++|+++ +++ ++|++|+.+..++ ++...++|+++.++||+ ++|.|+|+++++++..+..
T Consensus 155 ~~l~~i~~l~~~~------~~~-i~D~a~~~g~~~~-------~~~~~~~di~~~s~sK~-~g~~g~G~~~~~~~~~l~~ 219 (382)
T 4eb5_A 155 QPVEEISEVLAGK------AAL-HIDATASVGQIEV-------DVEKIGADMLTISSNDI-YGPKGVGALWIRKEAKLQP 219 (382)
T ss_dssp CCHHHHHHHHTTS------SEE-EEECTTTBTTBCC-------CHHHHTCSEEEEETGGG-TCCSSCEEEEEETTCCCCC
T ss_pred CCHHHHHHHHHHC------CCE-EEEcchhcCCccc-------CccccCCCEEEeehHHh-cCCCceEEEEEccccccCc
Confidence 9999999999999 999 9999998543221 11112579999999998 5677899999877531211
Q ss_pred ccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCC--CccEE
Q 011057 299 ELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDE--GVPLV 376 (494)
Q Consensus 299 ~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~--~~~~v 376 (494)
.+.+.........++.+.....++.++++.+. ++++++.++..++++++.+.|++++++++..++. ..+++
T Consensus 220 ------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 292 (382)
T 4eb5_A 220 ------VILGGGQENGLRSGSENVPSIVGFGKAAEITA-MEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNV 292 (382)
T ss_dssp ------SSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEE
T ss_pred ------eecCCCccccccCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEE
Confidence 11111000001123444445556666776554 3678889999999999999999987788765431 24688
Q ss_pred EEEecCCCCCCHHHHHHHHHhcCceeeccccCCC-------------C---CCceEEEEEeccCCChHHHHHHHHHHHHH
Q 011057 377 AFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPAD-------------A---QHITVLRVVIREDFSRTLAERLVLDITKV 440 (494)
Q Consensus 377 ~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~-------------~---~~~~~lRvs~~~~~t~~~id~~i~~l~~~ 440 (494)
.|.++ +.+..++.++|.++|+.+........ . .+..++|++++..++.++++++++.|+++
T Consensus 293 ~~~~~---~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 369 (382)
T 4eb5_A 293 NVRFS---YIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGV 369 (382)
T ss_dssp EEEET---TSCHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred EEEeC---CcCHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 88874 35788999999999998754321000 0 12468999999888999999999999999
Q ss_pred HHHHhcC
Q 011057 441 LHELDSL 447 (494)
Q Consensus 441 ~~~l~~~ 447 (494)
++++++.
T Consensus 370 ~~~~~~~ 376 (382)
T 4eb5_A 370 IERLRSM 376 (382)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9888764
No 17
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.98 E-value=1.6e-30 Score=263.49 Aligned_cols=335 Identities=12% Similarity=0.078 Sum_probs=250.4
Q ss_pred CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHH
Q 011057 67 WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRK 146 (494)
Q Consensus 67 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~ 146 (494)
..++.+.+++.+.+ .. ..++...++.+++++++++++|.+.. ..+++|+||++|+.+++.++..
T Consensus 23 ~~~~~v~~a~~~~~----~~-~~~~~~~~~~~~~~~~la~~~~~~~~----~~v~~~~sgt~al~~~~~~~~~------- 86 (411)
T 3nnk_A 23 NADPRVLRAMSSQL----IG-QYDPAMTHYMNEVMALYRGVFRTENR----WTMLVDGTSRAGIEAILVSAIR------- 86 (411)
T ss_dssp CCCHHHHHHHTSCC----CC-TTCHHHHHHHHHHHHHHHHHHTCCCS----EEEEEESCHHHHHHHHHHHHCC-------
T ss_pred CCCHHHHHHhhccc----cc-cccHHHHHHHHHHHHHHHHHhCCCCC----cEEEECCCcHHHHHHHHHHhcC-------
Confidence 34566766664332 21 12456678888999999999999752 2367888999999988887732
Q ss_pred hcCCCCCCCeEEeCCCcchH--HHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhh-CCeEEEEeeCCCCcccccCHHH
Q 011057 147 AEGKPFDKPNIVTGANVQVC--WEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDE-NTICVAAILGSTLNGEFEDVKL 223 (494)
Q Consensus 147 ~~g~~~~~~~vi~~~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~t~~vv~~~~~~~tG~~~~l~~ 223 (494)
.+++|+++.++|++ +...++..|++++.++++++ +.+|+++|++++++ ++++|++++++|+||.+.|+++
T Consensus 87 ------~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~ 159 (411)
T 3nnk_A 87 ------PGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEVPWG-EVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAE 159 (411)
T ss_dssp ------TTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTT
T ss_pred ------CCCEEEEecCCchHHHHHHHHHHcCCeEEEEecCCC-CCCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccHHH
Confidence 13689999999987 88889999999999999764 78999999999987 8999999999999999999999
Q ss_pred HHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCccccccc-
Q 011057 224 LNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIF- 302 (494)
Q Consensus 224 I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~- 302 (494)
|.++|+++ |+++|+|++++.+..++ ++...++|++++++|||+++|.|+|+++++++ .+ +.+..
T Consensus 160 i~~l~~~~------~~~li~Dea~~~~~~~~-------~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~-~~-~~~~~~ 224 (411)
T 3nnk_A 160 LGEICRRY------DALFYTDATASLGGNPL-------ETDVWGLDAVSAGMQKCLGGPSGTSPITLSAR-ME-EAIRRR 224 (411)
T ss_dssp HHHHHHHH------TCEEEEECTTTBTTBCC-------CTTTTTCSEEECCSTTTTCCCSSEEEEEECHH-HH-HHHHTT
T ss_pred HHHHHHHc------CCEEEEECCcccCCccc-------chhccCCcEEEecCccccCCCCceEEEEECHH-HH-HHHhhc
Confidence 99999999 99999999998754332 22234689999999999889999999988653 21 11111
Q ss_pred ---ccCCCCCCC-----------------------CCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHH
Q 011057 303 ---HINYLGADQ-----------------------PTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKE 356 (494)
Q Consensus 303 ---~~~y~~~~~-----------------------~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~ 356 (494)
.+.|.++.+ ......++.+.....++.++++.+..+|++++.++..++++++.+
T Consensus 225 ~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~ 304 (411)
T 3nnk_A 225 KCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVK 304 (411)
T ss_dssp CCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 111211110 000112455566677777888888777889999999999999999
Q ss_pred HHhhCCCeEEeecCC--CccEEEEEecCCCCCCHHHHHHHHHhc-CceeeccccCCCCCCceEEEEEe-ccCCChHHHHH
Q 011057 357 GLEKTGRFNIVSKDE--GVPLVAFSLKDNKRHDEFEVAELLRRF-GWIVPAYTMPADAQHITVLRVVI-REDFSRTLAER 432 (494)
Q Consensus 357 ~L~~~~~~~~~~~~~--~~~~v~f~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRvs~-~~~~t~~~id~ 432 (494)
.|++++ +++..++. ..++++|.++ .+.+..++.++|.++ |+.++....+ ....++|+++ ...++++++++
T Consensus 305 ~L~~~g-~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~gi~v~~g~~~---~~~~~iRi~~~~~~~~~~~i~~ 378 (411)
T 3nnk_A 305 GIQAMG-LETFGDLKHKMNNVLGVVIP--QGINGDQARKLMLEDFGIEIGTSFGP---LHGKVWRIGTMGYNARKDCVMT 378 (411)
T ss_dssp HHHHTT-CCBCSCGGGBCSSEEEEECC--TTCCHHHHHHHHHHHHSEEEEECCGG---GTTTEEEEECCGGGCSHHHHHH
T ss_pred HHHHcC-CEeCCCcccccccEEEEECC--CCCCHHHHHHHHHHhcCeEEeCccCC---CCCCEEEEeCccCcCCHHHHHH
Confidence 999984 77765431 3567788874 245788999999887 9987643221 2345899998 55568999999
Q ss_pred HHHHHHHHHHHHh
Q 011057 433 LVLDITKVLHELD 445 (494)
Q Consensus 433 ~i~~l~~~~~~l~ 445 (494)
+++.|+++++++.
T Consensus 379 ~~~~l~~~l~~~~ 391 (411)
T 3nnk_A 379 TLSALEAVLNYLK 391 (411)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 9999999887653
No 18
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.98 E-value=1.1e-30 Score=261.60 Aligned_cols=380 Identities=15% Similarity=0.083 Sum_probs=259.2
Q ss_pred hcCCCCCCCCCCCCHHHHHHHHHHhhhhcCCCC------------C-------cccccccCCChHHHHHHHHHHhcccCC
Q 011057 25 NSLPRFTMPENSIPKEAAYQIINDELMLDGNPR------------L-------NLASFVTTWMEPECDKLMMAAINKNYV 85 (494)
Q Consensus 25 ~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~------------~-------~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (494)
..+..-.+|++|.+.+++...+.++..++.+.. + .+++|+++. ....+++.. |+
T Consensus 16 ~~~~~~~~p~~g~~~~~i~~~l~~~~~~d~~~~~~~~~~geregrv~~~~~~~r~~g~~hg~--~~~~d~l~~----~~- 88 (450)
T 3bc8_A 16 LLLEQGKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGI--GRSGDISAV----QP- 88 (450)
T ss_dssp HHHHHCCCCSSCCCHHHHHHHHHHHHHTBGGGCTTCCCCSSCCCCCSCHHHHHHTTTCCSCB--CC-----------CC-
T ss_pred HHHHhccCCccCCCHHHHHHHHHHHhhCCCCccccccccCcccceEecccccCCccceecch--hHHHHHHHh----Cc-
Confidence 333334799999999999999988776543221 1 022333322 112344432 44
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChh-HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcc
Q 011057 86 DMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSS-EAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQ 164 (494)
Q Consensus 86 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt-~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h 164 (494)
.+..+|....+++.+..|+.+++|++.. ..+++++|+| .++.+++.+++... . ..+.|+++..+|
T Consensus 89 ~~~~~~~~~~~e~~~~~~~~~~lGlp~~----~~~~lV~GaT~~~~a~~L~aar~~~--------~--~~~~viv~r~aH 154 (450)
T 3bc8_A 89 KAAGSSLLNKITNSLVLNVIKLAGVHSV----ASCFVVPMATGMSLTLCFLTLRHKR--------P--KAKYIIWPRIDQ 154 (450)
T ss_dssp SBHHHHHHHHHHHHHHHHHHHHHTCTTC----CEEEEESSCHHHHHHHHHHHHHHHC--------T--TCCEEEEECCCC
T ss_pred cccCCcHHHHHHHHHHHHHHHhCCCCCC----ceEEEECCHHHHHHHHHHHHcchhh--------c--CCCEEEEECCcH
Confidence 5666778889999999999999999863 3468899998 66666666665421 0 125789999999
Q ss_pred hHHHHHHHHcCCeeEEEecc--CCccccCHHHHHHhhhhC---CeEEEEeeCCC-CcccccCHHHHHHHHHHhhcccCCC
Q 011057 165 VCWEKFARYFEVELKEVKLS--EGYYVMDPVKAVEMVDEN---TICVAAILGST-LNGEFEDVKLLNDLLAEKNKETGWD 238 (494)
Q Consensus 165 ~s~~~~~~~~G~~v~~v~~~--~~~~~~d~~~L~~~i~~~---t~~vv~~~~~~-~tG~~~~l~~I~~la~~~~~~~~~~ 238 (494)
.|+.+++.++|++++.|+.. ++.+.+|+++|+++|++. .++++++.+++ .+|.++|+++|+++|++| |
T Consensus 155 kSv~kAl~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~------g 228 (450)
T 3bc8_A 155 KSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANY------D 228 (450)
T ss_dssp HHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHH------T
T ss_pred HHHHHHHHHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHC------C
Confidence 99999999999998888652 335799999999999763 34444444444 467999999999999999 9
Q ss_pred ceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCccccc
Q 011057 239 TPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNF 318 (494)
Q Consensus 239 ~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 318 (494)
+|+|||+|||+... +..+....-+..+++|+++.|.|||+++|.++++++++++..+... ...|.+.
T Consensus 229 i~l~VD~A~G~~~~-~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~---~~~~~g~--------- 295 (450)
T 3bc8_A 229 IPHVVNNAYGLQSS-KCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDI---SKMYPGR--------- 295 (450)
T ss_dssp CCEEEECTTTTTCH-HHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHH---HHHSCSC---------
T ss_pred CeEEEECCCchhhh-hhHhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHH---HHHhhcC---------
Confidence 99999999997542 2211111111125899999999999999999999999865443221 2234311
Q ss_pred CcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCC---CeEEeecCCCcc-EEEEEecC---CCCCCHHHH
Q 011057 319 SKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTG---RFNIVSKDEGVP-LVAFSLKD---NKRHDEFEV 391 (494)
Q Consensus 319 s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~---~~~~~~~~~~~~-~v~f~~~~---~~~~~~~~l 391 (494)
.+....+.+|+++..+|.+++++.+++..++++++++.|++++ +++++..+. .+ -.++.+.. ....|...+
T Consensus 296 -~s~SpsL~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~-~~~~~~~~l~~~~~~~~~D~tkl 373 (450)
T 3bc8_A 296 -ASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPH-NPISLAMTLKTIDGHHDKAVTQL 373 (450)
T ss_dssp -BCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTT-CSSEEEEECTTTSSSSSCHHHHH
T ss_pred -CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCcc-CCCcceeecccccccccCCCcee
Confidence 1123458899999889999999999999999999999999888 787776542 22 12333321 113355567
Q ss_pred HHHHHhcCce---e--------------eccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHHhc
Q 011057 392 AELLRRFGWI---V--------------PAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDS 446 (494)
Q Consensus 392 ~~~L~~~Gi~---v--------------~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~~ 446 (494)
.-.+...|+. + ..+....+..+...+=+.++...+++++++|++.|+++++..++
T Consensus 374 ~i~~~~~g~sG~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~~ 445 (450)
T 3bc8_A 374 GSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRK 445 (450)
T ss_dssp HHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCccceeeecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 7677666632 1 11222222333445556667778999999999999998876644
No 19
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.98 E-value=7.6e-30 Score=256.15 Aligned_cols=337 Identities=13% Similarity=0.056 Sum_probs=250.4
Q ss_pred cCCChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHH
Q 011057 65 TTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNK 144 (494)
Q Consensus 65 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~ 144 (494)
+.+.++.+.+++.+.+.. .+ ++...++++++++++++++|.+. ...+++|+||++|+.+++.++.++
T Consensus 28 ~~~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~~~~~la~~~g~~~----~~~v~~~~g~t~a~~~~~~~l~~~---- 94 (386)
T 2dr1_A 28 PVACFPEVLEIMKVQMFS---HR--SKEYRKVHMDTVERLREFLEVEK----GEVLLVPSSGTGIMEASIRNGVSK---- 94 (386)
T ss_dssp SCCCCHHHHHHTTSCCCC---TT--SHHHHHHHHHHHHHHHHHHTCSS----SEEEEESSCHHHHHHHHHHHHSCT----
T ss_pred CcCCcHHHHHHHhccccc---cc--CHHHHHHHHHHHHHHHHHhCCCC----CcEEEEeCChHHHHHHHHHHhhcC----
Confidence 334566777766554432 12 24457888999999999999971 135889999999999888876321
Q ss_pred HHhcCCCCCCCeEEeCCCcchH--HHHHHHHcCCeeEEEeccCCccccCHHHHHHhhh--hCCeEEEEeeCCCCcccccC
Q 011057 145 RKAEGKPFDKPNIVTGANVQVC--WEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVD--ENTICVAAILGSTLNGEFED 220 (494)
Q Consensus 145 ~~~~g~~~~~~~vi~~~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~--~~t~~vv~~~~~~~tG~~~~ 220 (494)
+++|+++.++|.+ +..+++..|++++.++++++ +.+|+++|++++. +++++|++++++|+||.+.|
T Consensus 95 ---------gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~ 164 (386)
T 2dr1_A 95 ---------GGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEPG-KAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNP 164 (386)
T ss_dssp ---------TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC
T ss_pred ---------CCeEEEEcCCchhHHHHHHHHHhCCceEEEecCCC-CCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCC
Confidence 2689999999988 88888999999999999864 7899999999994 57899999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCccccc
Q 011057 221 VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEEL 300 (494)
Q Consensus 221 l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~ 300 (494)
+++|.++|+++ |+++++|++|+.+..++ ++...++|+++.++||++++|.|+|+++++++ .+ +.+
T Consensus 165 l~~i~~l~~~~------~~~li~D~a~~~~~~~~-------~~~~~~~di~~~s~sK~~~~~~g~G~~~~~~~-~~-~~~ 229 (386)
T 2dr1_A 165 LPELAKVAKEH------DKLVFVDAVSAMGGADI-------KFDKWGLDVVFSSSQKAFGVPPGLAIGAFSER-FL-EIA 229 (386)
T ss_dssp HHHHHHHHHHT------TCEEEEECTTTBTTBCC-------CTTTTTCSEEEEETTSTTCCCSSCEEEEECHH-HH-HHH
T ss_pred HHHHHHHHHHc------CCeEEEEccccccCccc-------cccccCCcEEEEeccccccCCCceEEEEECHH-HH-HHH
Confidence 99999999999 99999999998764321 12223689999999999988888999998653 22 111
Q ss_pred ccc--cCCCCC------CCC-CcccccCcchHHHHHHHHHHHHhcHh-HHHHHHHHHHHHHHHHHHHHhhCCCeEEeecC
Q 011057 301 IFH--INYLGA------DQP-TFTLNFSKGSSQVIAQYYQLIRLGFE-GYRNVMENCHENAMVLKEGLEKTGRFNIVSKD 370 (494)
Q Consensus 301 ~~~--~~y~~~------~~~-~~~~~~s~~~~~~~a~~~al~~l~~~-g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~ 370 (494)
... ..|... ... .....++.+.....++.++++.+... +++++.++..++++++.+.|+++ ++++..+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 308 (386)
T 2dr1_A 230 EKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI-GLDILAEP 308 (386)
T ss_dssp TTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCT
T ss_pred hcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCeeCcCc
Confidence 100 001000 000 00011344445566677777776666 68889999999999999999998 58776542
Q ss_pred C--CccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHHh
Q 011057 371 E--GVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELD 445 (494)
Q Consensus 371 ~--~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~ 445 (494)
. ..+++++.++. +.+..++.++|.++|+.+.....+ ....++|++++..++.++++++++.|+++++++.
T Consensus 309 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~~~~~---~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 380 (386)
T 2dr1_A 309 GHESPTITAVLTPP--GIKGDEVYEAMRKRGFELAKGYGS---VKEKTFRIGHMGYMKFEDIQEMLDNLREVINELK 380 (386)
T ss_dssp TCBCSSEEEEECCT--TCCHHHHHHHHHHTTEECEECCGG---GTTTEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCceEEEEcCC--CCCHHHHHHHHHHCCeEEecCccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 1 35678888742 457889999999999987554322 1345799999988999999999999999988764
No 20
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.97 E-value=3.6e-30 Score=261.25 Aligned_cols=316 Identities=14% Similarity=0.101 Sum_probs=240.7
Q ss_pred ChhhHHHHHHHHHHHHHHhCCCCCCCCCcce-eeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchH--
Q 011057 90 YPVTTELQNRCVNIIARLFNAPLEDSETAVG-VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVC-- 166 (494)
Q Consensus 90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~-~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s-- 166 (494)
.+...++..++++++++++|.+. ... ++++|+++|+.+++.++.. .+++|+++.++|++
T Consensus 39 ~~~~~~~~~~l~~~la~~~g~~~-----~~~~~~~~s~t~al~~~~~~l~~-------------~gd~Vl~~~~~~~~~~ 100 (416)
T 3isl_A 39 DPAFTGIMNETMEMLRELFQTKN-----RWAYPIDGTSRAGIEAVLASVIE-------------PEDDVLIPIYGRFGYL 100 (416)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCC-----SEEEEEESCHHHHHHHHHHHHCC-------------TTCEEEEEESSHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCCC-----CcEEEecCcHHHHHHHHHHHhcC-------------CCCEEEEecCCcccHH
Confidence 34567888899999999999875 234 4788999999988877622 13689999999987
Q ss_pred HHHHHHHcCCeeEEEeccCCccccCHHHHHHhhh-hCCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEEEec
Q 011057 167 WEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVD-ENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDA 245 (494)
Q Consensus 167 ~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~-~~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~ 245 (494)
+..+++..|++++.++++++ +.+|+++|+++++ +++++|++++++|+||.+.|+++|.++|+++ |+++++|+
T Consensus 101 ~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~------~~~li~D~ 173 (416)
T 3isl_A 101 LTEIAERYGANVHMLECEWG-TVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTE------DALFIVDA 173 (416)
T ss_dssp HHHHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHT------TCEEEEEC
T ss_pred HHHHHHhcCCeeEEEecCCC-CCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHc------CCEEEEEC
Confidence 77888999999999999875 6899999999998 5899999999999999999999999999999 99999999
Q ss_pred ccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCccccccc-----------------------
Q 011057 246 ASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIF----------------------- 302 (494)
Q Consensus 246 a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~----------------------- 302 (494)
+|+.+..++ ++...++|++++++|||+++|.|+|+++++++ .+ ..+..
T Consensus 174 a~~~~~~~~-------~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~-~~-~~~~~~~~~~~Gw~~~~~~~~~~gg~~~ 244 (416)
T 3isl_A 174 VATIGGCEV-------KVDEWKIDAAIGGTQKCLSVPSGMAPITYNER-VA-DVIAARKKVERGIATQADRAALSGNRPI 244 (416)
T ss_dssp TTTTTTSCC-------CTTTTTCSEEECCSSSTTCCCSSEEEEEECHH-HH-HHHHTC------------------CCCC
T ss_pred CccccCCCc-------chhhcCCCEEEecCccccCCCCCeEEEEECHH-HH-HHhhccccccccccccccchhccCCCCC
Confidence 998654322 22233689999999999999999999988653 11 11110
Q ss_pred ccCCCC------CCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCC--Ccc
Q 011057 303 HINYLG------ADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDE--GVP 374 (494)
Q Consensus 303 ~~~y~~------~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~--~~~ 374 (494)
...|.. .........++.+.....++.++++.+...|+++..++..++++++.+.|++. ++++..++. ...
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~ 323 (416)
T 3isl_A 245 TSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAM-GLRLFGDDSCKMPV 323 (416)
T ss_dssp SCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCTT
T ss_pred CccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCccccCCc
Confidence 000000 00000111245556667778888888877778999999999999999999997 488765432 246
Q ss_pred EEEEEecCCCCCCHHHHHHHHHhc-CceeeccccCCCCCCceEEEEEeccCCChHH-HHHHHHHHHHHHHHHh
Q 011057 375 LVAFSLKDNKRHDEFEVAELLRRF-GWIVPAYTMPADAQHITVLRVVIREDFSRTL-AERLVLDITKVLHELD 445 (494)
Q Consensus 375 ~v~f~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~-id~~i~~l~~~~~~l~ 445 (494)
++.|.++ .+.+..++.++|.++ ||.+.....+ ....++|++++...+.++ ++++++.|+++++++.
T Consensus 324 ~~~~~~~--~~~~~~~l~~~L~~~~gi~v~~g~~~---~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~~ 391 (416)
T 3isl_A 324 VTCVEIP--GGIDGESVRDMLLAQFGIEIASSFGP---LAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRHN 391 (416)
T ss_dssp EEEEECC--TTCCHHHHHHHHHHHHCEECBCCCST---TTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEeCC--CCCCHHHHHHHHHHhCCEEEecCCCC---CCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHcC
Confidence 7788874 245788999999887 9987543221 234689999977778877 9999999999888763
No 21
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.97 E-value=7e-29 Score=248.84 Aligned_cols=342 Identities=15% Similarity=0.125 Sum_probs=244.5
Q ss_pred CCChHHHHHHHHHHhcccCCCCC-CC---hhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHH
Q 011057 66 TWMEPECDKLMMAAINKNYVDMD-EY---PVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKW 141 (494)
Q Consensus 66 ~~~~p~~~~~~~~~~~~~~~~~~-~~---~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~ 141 (494)
+++++.+.+++.+++.....+.. .+ ........++++++++++|.++ ..+++|+||++|+.+++.++....
T Consensus 11 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~-----~~v~~~~g~t~a~~~~~~~~~~~~ 85 (384)
T 1eg5_A 11 TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSP-----SEIFFTSCATESINWILKTVAETF 85 (384)
T ss_dssp CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCG-----GGEEEESCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCC-----CeEEEECCHHHHHHHHHHhhhhhc
Confidence 35678888998888765322221 11 2345667789999999999864 358999999999999988885310
Q ss_pred HHHHHhcCCCCCCCeEEeCCCcchHHHHHH---HHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccc
Q 011057 142 QNKRKAEGKPFDKPNIVTGANVQVCWEKFA---RYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEF 218 (494)
Q Consensus 142 ~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~---~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~ 218 (494)
. ..+++|+++.++|.++...+ +..|++++.++++++ +.+|+++|++++++++++|++++++|+||.+
T Consensus 86 ~---------~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~ 155 (384)
T 1eg5_A 86 E---------KRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSR-GVVKLEELEKLVDEDTFLVSIMAANNEVGTI 155 (384)
T ss_dssp T---------TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTT-SCBCHHHHHHHCCTTEEEEEEESBCTTTCBB
T ss_pred c---------CCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCC-CccCHHHHHHHhCCCCeEEEEECCCCCcccc
Confidence 0 01268999999998876665 678999999998764 7899999999999889999999999999999
Q ss_pred cCHHHHHHHHHHhhcccCCC--ceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCc
Q 011057 219 EDVKLLNDLLAEKNKETGWD--TPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDL 296 (494)
Q Consensus 219 ~~l~~I~~la~~~~~~~~~~--~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~ 296 (494)
.|+++|.++|+++ + +++++|++|+.+..++ ++...++|++++++||++ +|.|+|+++++++..+
T Consensus 156 ~~~~~i~~l~~~~------~~~~~li~Dea~~~~~~~~-------~~~~~~~di~~~s~sK~~-g~~G~G~~~~~~~~~~ 221 (384)
T 1eg5_A 156 QPVEDVTRIVKKK------NKETLVHVDAVQTIGKIPF-------SLEKLEVDYASFSAHKFH-GPKGVGITYIRKGVPI 221 (384)
T ss_dssp CCHHHHHHHHHHH------CTTCEEEEECTTTTTTSCC-------CCTTTCCSEEEEEGGGGT-SCTTCEEEEECTTSCC
T ss_pred cCHHHHHHHHHhc------CCceEEEEEhhhhcCCccc-------CchhcCCCEEEecHHHhc-CCCceEEEEEcCCCcc
Confidence 9999999999999 8 9999999998443221 222225899999999984 6667999988764211
Q ss_pred ccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCC--Ccc
Q 011057 297 PEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDE--GVP 374 (494)
Q Consensus 297 ~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~--~~~ 374 (494)
... +...........++.+.....++.++++.+ .+.+++..++..++++++.+.|++. ++++..++. ...
T Consensus 222 ~~~------~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~ 293 (384)
T 1eg5_A 222 RPL------IHGGGQERGLRSGTQNVPGIVGAARAMEIA-VEELSEAAKHMEKLRSKLVSGLMNL-GAHIITPLEISLPN 293 (384)
T ss_dssp CCS------BCSSCTTTTTBCSCCCHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHTT-TCEECSCTTSBCTT
T ss_pred ccc------cccCcccccccCCCCChHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHhCCC-CeEEeCCcccCCCC
Confidence 111 111110000112344444555556666653 3457788899999999999999984 588765432 235
Q ss_pred EEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCC-------------C---CCceEEEEEeccCCChHHHHHHHHHHH
Q 011057 375 LVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPAD-------------A---QHITVLRVVIREDFSRTLAERLVLDIT 438 (494)
Q Consensus 375 ~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~-------------~---~~~~~lRvs~~~~~t~~~id~~i~~l~ 438 (494)
++.|.+.+ .+..++.+.|.++|+.+........ . .+..++|++++..++.++++++++.|+
T Consensus 294 ~~~~~~~~---~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~ 370 (384)
T 1eg5_A 294 TLSVSFPN---IRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIE 370 (384)
T ss_dssp EEEEECTT---CCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEEeCC---CCHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 77777642 4678999999999998754211100 0 024689999998889999999999999
Q ss_pred HHHHHHhcC
Q 011057 439 KVLHELDSL 447 (494)
Q Consensus 439 ~~~~~l~~~ 447 (494)
++++++++.
T Consensus 371 ~~~~~~~~~ 379 (384)
T 1eg5_A 371 EILSFLDLT 379 (384)
T ss_dssp HHHHHC---
T ss_pred HHHHHHHhh
Confidence 998876554
No 22
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.97 E-value=3e-30 Score=255.64 Aligned_cols=331 Identities=15% Similarity=0.079 Sum_probs=244.6
Q ss_pred CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHH
Q 011057 67 WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRK 146 (494)
Q Consensus 67 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~ 146 (494)
+++|.+.+++.+.+.. ..++...+...++++++++++|.+.+ ...+++|+||++|+.+++.++..
T Consensus 10 ~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g~~~~---~~~v~~t~g~t~a~~~~~~~~~~------- 74 (353)
T 2yrr_A 10 PIPERVQKALLRPMRG-----HLDPEVLRVNRAIQERLAALFDPGEG---ALVAALAGSGSLGMEAGLANLDR------- 74 (353)
T ss_dssp CCCHHHHGGGGSCCCC-----TTCHHHHHHHHHHHHHHHHHHCCCTT---CEEEEESSCHHHHHHHHHHTCSC-------
T ss_pred CCCHHHHHHHhccccc-----ccCHHHHHHHHHHHHHHHHHhCCCCC---CceEEEcCCcHHHHHHHHHHhcC-------
Confidence 4567777777665543 13556667788999999999998621 14589999999999988776621
Q ss_pred hcCCCCCCCeEEeCCCcchHH--HHHHHHcCCeeEEEeccCCccccCHHHHHHhhhh-CCeEEEEeeCCCCcccccCHHH
Q 011057 147 AEGKPFDKPNIVTGANVQVCW--EKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDE-NTICVAAILGSTLNGEFEDVKL 223 (494)
Q Consensus 147 ~~g~~~~~~~vi~~~~~h~s~--~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~t~~vv~~~~~~~tG~~~~l~~ 223 (494)
++|++++..|+++ ...++..|++++.++++++ +.+|+++|++++++ ++++|++++++|+||.+.|+++
T Consensus 75 --------d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~ 145 (353)
T 2yrr_A 75 --------GPVLVLVNGAFSQRVAEMAALHGLDPEVLDFPPG-EPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAEA 145 (353)
T ss_dssp --------CCEEEEECSHHHHHHHHHHHHTTCCEEEEECCTT-SCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHH
T ss_pred --------CcEEEEcCCCchHHHHHHHHHcCCceEEEeCCCC-CCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCHHH
Confidence 4688888888874 5667888999999999865 78999999999998 8999999999999999999999
Q ss_pred HHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccccc
Q 011057 224 LNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFH 303 (494)
Q Consensus 224 I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~ 303 (494)
|.++|+++ |+++++|++|+.+..++ ++...++|++++++|||+++|.|+|+++++++ .+ +.+...
T Consensus 146 i~~l~~~~------~~~li~D~a~~~~~~~~-------~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~-~~-~~l~~~ 210 (353)
T 2yrr_A 146 IGALAKEA------GALFFLDAVTTLGMLPF-------SMRAMGVDYAFTGSQKCLSAPPGLAPIAASLE-AR-KAFTGK 210 (353)
T ss_dssp HHHHHHHH------TCEEEEECTTTTTTSCC-------CHHHHTCSEEECCTTSTTCCCSSCEEEEECHH-HH-HHCCCC
T ss_pred HHHHHHHc------CCeEEEEcCcccccccc-------cccccCceEEEecCcccccCCCceEEEEECHH-HH-HHhccC
Confidence 99999999 99999999997543221 12112579999999999988889999988654 22 111100
Q ss_pred cCC-CC-----CCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCC-CccEE
Q 011057 304 INY-LG-----ADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDE-GVPLV 376 (494)
Q Consensus 304 ~~y-~~-----~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~-~~~~v 376 (494)
..+ .. .........++.+.....++.++++.+...+++++.++..++++++.+.|+++ ++++..++. ...++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~ 289 (353)
T 2yrr_A 211 RGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-GFRPYPKASPLPTVL 289 (353)
T ss_dssp SCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSSBCTTEE
T ss_pred CCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCccccCccCCCeEE
Confidence 101 00 00000111244555556667778887777778889999999999999999998 588876432 34566
Q ss_pred EEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHH-HHHHHHHHHHH
Q 011057 377 AFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAE-RLVLDITKVLH 442 (494)
Q Consensus 377 ~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id-~~i~~l~~~~~ 442 (494)
+|.++ .+.+..++.++|.++|+.+.....+ ....++|++++...+.++++ ++++.|+++++
T Consensus 290 ~~~~~--~~~~~~~~~~~l~~~gi~v~~g~~~---~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~ 351 (353)
T 2yrr_A 290 VVRPP--EGVDADRLVRALYAEGVAVAGGIGP---TRGQVLRLGLMGEGARREAYQAFLKALDRALA 351 (353)
T ss_dssp EEECC--TTCCHHHHHHHHHHTTEECEECCGG---GTTTCEEEECSGGGSCHHHHHHHHHHHHHHHH
T ss_pred EEECC--CCCCHHHHHHHHHHCCEEEeCCccc---cCCCeEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence 78873 2457889999999999987543322 12346999998788999999 99999988765
No 23
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.97 E-value=6.3e-30 Score=257.46 Aligned_cols=336 Identities=12% Similarity=0.029 Sum_probs=247.1
Q ss_pred cCCChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHH
Q 011057 65 TTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNK 144 (494)
Q Consensus 65 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~ 144 (494)
+.+.++.+.+++.+.+.. ..++.......++++++++++|.++ ..+++|+||++|+.+++.++..
T Consensus 17 ~~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g~~~-----~~v~~t~g~t~a~~~~~~~~~~----- 81 (392)
T 2z9v_A 17 PVNAYPEVLRGLGRTVLY-----DYDPAFQLLYEKVVDKAQKAMRLSN-----KPVILHGEPVLGLEAAAASLIS----- 81 (392)
T ss_dssp CCCCCHHHHHHTTSCCCC-----TTSHHHHHHHHHHHHHHHHHTTCSS-----CCEEESSCTHHHHHHHHHHHCC-----
T ss_pred CcCCCHHHHHHHhccccc-----cccHHHHHHHHHHHHHHHHHhCCCC-----CEEEEeCCchHHHHHHHHHhcC-----
Confidence 345567787777665543 1235556677789999999999864 3489999999999988887722
Q ss_pred HHhcCCCCCCCeEEeCCCcchHH--HHHHHHcCCeeEEEeccCCccccCHHHHHHhhh--hCCeEEEEeeCCCCcccccC
Q 011057 145 RKAEGKPFDKPNIVTGANVQVCW--EKFARYFEVELKEVKLSEGYYVMDPVKAVEMVD--ENTICVAAILGSTLNGEFED 220 (494)
Q Consensus 145 ~~~~g~~~~~~~vi~~~~~h~s~--~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~--~~t~~vv~~~~~~~tG~~~~ 220 (494)
.+++|+++.++|+++ ...++..|++++.++++++ +.+|+++|++++. +++++|++++++|+||.+.|
T Consensus 82 --------~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~ 152 (392)
T 2z9v_A 82 --------PDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYN-EAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINP 152 (392)
T ss_dssp --------TTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCTT-SCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECC
T ss_pred --------CCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCCC-CCCCHHHHHHHHhcCCCCcEEEEeccCCCCceecc
Confidence 125799999999775 3455668999999999865 6799999999995 47899999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCccccc
Q 011057 221 VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEEL 300 (494)
Q Consensus 221 l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~ 300 (494)
+++|.++|+++ |+++++|++|+.+..++ ++...++|++++++|||+++|.|+|+++++++ .+ +.+
T Consensus 153 l~~i~~l~~~~------~~~li~D~a~~~g~~~~-------~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~-~~-~~l 217 (392)
T 2z9v_A 153 IDAIGALVSAH------GAYLIVDAVSSFGGMKT-------HPEDCKADIYVTGPNKCLGAPPGLTMMGVSER-AW-AKM 217 (392)
T ss_dssp HHHHHHHHHHT------TCEEEEECTTTBTTBSC-------CGGGGTCSEEEECSSSTTCCCSCCEEEEECHH-HH-HHH
T ss_pred HHHHHHHHHHc------CCeEEEEcccccCCccc-------ccccccceEEEecCcccccCCCceeEEEECHH-HH-HHh
Confidence 99999999999 99999999998654322 11112589999999999999999999988653 22 111
Q ss_pred cc-c--c--CCCC------CCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeec
Q 011057 301 IF-H--I--NYLG------ADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSK 369 (494)
Q Consensus 301 ~~-~--~--~y~~------~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~ 369 (494)
.. . . .|.. .........++.+....+++.++++.+...|++++.++..++++++.+.|+++ ++++..+
T Consensus 218 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 296 (392)
T 2z9v_A 218 KANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM-GLSVWAA 296 (392)
T ss_dssp HTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSS
T ss_pred hhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-CCeeccC
Confidence 10 0 0 1110 00011112245555556667778877766678889999999999999999998 5877652
Q ss_pred CC---CccEEEEEecCCCCCCHHHHHHHHHhc-CceeeccccCCCCCCceEEEEEecc-CCChHHHHHHHHHHHHHHHHH
Q 011057 370 DE---GVPLVAFSLKDNKRHDEFEVAELLRRF-GWIVPAYTMPADAQHITVLRVVIRE-DFSRTLAERLVLDITKVLHEL 444 (494)
Q Consensus 370 ~~---~~~~v~f~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRvs~~~-~~t~~~id~~i~~l~~~~~~l 444 (494)
+. ..+++.|.++ .+.+..++.++|.++ |+.+.....+ ....++|+++.. .++.++++++++.|+++++++
T Consensus 297 ~~~~~~~~~~~~~~~--~~~~~~~l~~~L~~~~gi~v~~g~~~---~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~ 371 (392)
T 2z9v_A 297 SDSIASPTTTAVRTP--DGVDEKALRQAARARYGVVFSSGRGE---TLGKLTRIGHMGPTAQPIYAIAALTALGGAMNAA 371 (392)
T ss_dssp SGGGBCTTEEEEECC--TTCCHHHHHHHHHHHHCEECEECCGG---GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred CccccCCceEEEECC--CCCCHHHHHHHHHhcCCEEEecCCCC---CCCCeEEEeCcccccCHHHHHHHHHHHHHHHHHc
Confidence 21 3567788874 245788999999998 9987543322 234579999644 789999999999999988766
Q ss_pred h
Q 011057 445 D 445 (494)
Q Consensus 445 ~ 445 (494)
.
T Consensus 372 ~ 372 (392)
T 2z9v_A 372 G 372 (392)
T ss_dssp T
T ss_pred C
Confidence 4
No 24
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.97 E-value=6.4e-30 Score=257.07 Aligned_cols=334 Identities=12% Similarity=0.025 Sum_probs=244.2
Q ss_pred cCCChHHHHHHHHHHhcccC-CCCC---CChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHH-H
Q 011057 65 TTWMEPECDKLMMAAINKNY-VDMD---EYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFK-R 139 (494)
Q Consensus 65 ~~~~~p~~~~~~~~~~~~~~-~~~~---~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~-~ 139 (494)
..+.++.+.+++.+.+.... .+.. .++.......++++.+++++|.+. ..+++|+||++|+.+++.+++ .
T Consensus 25 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~-----~~v~~~~g~t~a~~~~~~~~~~~ 99 (390)
T 1elu_A 25 QGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDP-----NTITITDNVTTGCDIVLWGLDWH 99 (390)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCG-----GGEEEESSHHHHHHHHHHHSCCC
T ss_pred cCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCH-----HHEEEeCChHHHHHHHHhCCCCC
Confidence 33456778888887775421 1111 233334566789999999999864 358999999999998887762 1
Q ss_pred HHHHHHHhcCCCCCCCeEEeCCCcchHHHH----HHHHcCCeeEEEeccC-CccccCHHHHHHhhhhCCeEEEEeeCCCC
Q 011057 140 KWQNKRKAEGKPFDKPNIVTGANVQVCWEK----FARYFEVELKEVKLSE-GYYVMDPVKAVEMVDENTICVAAILGSTL 214 (494)
Q Consensus 140 ~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~----~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~t~~vv~~~~~~~ 214 (494)
.+++|+++.++|.++.. .++..|++++.++++. +++.+|+++|++++++++++|++++++|+
T Consensus 100 -------------~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~np 166 (390)
T 1elu_A 100 -------------QGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWN 166 (390)
T ss_dssp -------------TTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTT
T ss_pred -------------CCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCCCceEEEEeccccC
Confidence 12689999999987654 3677899999999862 24789999999999988999999999999
Q ss_pred cccccCHHHHHHHHH----HhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEE
Q 011057 215 NGEFEDVKLLNDLLA----EKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIW 290 (494)
Q Consensus 215 tG~~~~l~~I~~la~----~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~ 290 (494)
||.+.|+++|.++|+ ++ |+++++|++|+.+..++ ++...++|+++.++|||+++|.|+|++++
T Consensus 167 tG~~~~~~~i~~l~~~~~~~~------~~~li~Dea~~~g~~~~-------~~~~~~~d~~~~s~~K~~~~~~g~G~~~~ 233 (390)
T 1elu_A 167 TGQVLPLAEIMAVCRRHQGNY------PVRVLVDGAQSAGSLPL-------DFSRLEVDYYAFTGHKWFAGPAGVGGLYI 233 (390)
T ss_dssp TCCBCCHHHHHHHHHHCCSSS------CCEEEEECTTTBTTBCC-------CTTTSCCSEEEEESSSTTCCCTTCEEEEE
T ss_pred CceecCHHHHHHHHhhhhhhc------CcEEEEEcccccCCcCC-------ChhhcCCCEEEccccccccCCCceEEEEE
Confidence 999999999999999 88 99999999998654322 22223689999999999999999999998
Q ss_pred eCCCCcccccccccCCCC------C------C-CCCcccccCcchHHHHHHHHHHHHhcHhH-HHHHHHHHHHHHHHHHH
Q 011057 291 RNKEDLPEELIFHINYLG------A------D-QPTFTLNFSKGSSQVIAQYYQLIRLGFEG-YRNVMENCHENAMVLKE 356 (494)
Q Consensus 291 ~~~~~~~~~~~~~~~y~~------~------~-~~~~~~~~s~~~~~~~a~~~al~~l~~~g-~~~~~~~~~~~a~~l~~ 356 (494)
+++ .+.........+.. . . ...+ ..++.+.....++.++++.+...+ ++++.++..++++++.+
T Consensus 234 ~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~ 311 (390)
T 1elu_A 234 HGD-CLGEINPTYVGWRSITYGAKGEPTGWAEGGKRF-EVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWR 311 (390)
T ss_dssp CTT-TGGGCCCCSCCTTTEEECTTSCEEEECSGGGGG-CCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred CHH-hHhhcCCccccCCcccccccCcccccccchHhh-CCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 753 22111111000000 0 0 0001 123444455666777887776655 78889999999999999
Q ss_pred HHhhCCCeEEeec-CCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHH
Q 011057 357 GLEKTGRFNIVSK-DEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVL 435 (494)
Q Consensus 357 ~L~~~~~~~~~~~-~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~ 435 (494)
.|+++++++++.+ +...++++|.+. .+.+..++.++|.++|+.+.... +..++|++++...++++++++++
T Consensus 312 ~L~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~gi~v~~~~------~~~~iRis~~~~~~~~~i~~~~~ 383 (390)
T 1elu_A 312 GLNQLPHVHCLATSAPQAGLVSFTVD--SPLGHRAIVQKLEEQRIYLRTIA------DPDCIRACCHYITDEEEINHLLA 383 (390)
T ss_dssp HHHHSTTEEESCSSCCSSSEEEEEEC--SSSCHHHHHHHHHHTTEECEEET------TTTEEEEECCTTCCHHHHHHHHH
T ss_pred HHHhcCCcEEecCccccccEEEEEcC--CCCCHHHHHHHHHHCCEEEEecC------CCCeEEEecccCCCHHHHHHHHH
Confidence 9999877988754 235678888874 24578899999999999875432 23579999987889988887776
Q ss_pred HHHH
Q 011057 436 DITK 439 (494)
Q Consensus 436 ~l~~ 439 (494)
.|++
T Consensus 384 ~l~~ 387 (390)
T 1elu_A 384 RLAD 387 (390)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 6653
No 25
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.97 E-value=7.4e-29 Score=252.31 Aligned_cols=345 Identities=17% Similarity=0.110 Sum_probs=252.3
Q ss_pred cCCChHHHHHHHHHHhc--ccCCCCCC-----ChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHH
Q 011057 65 TTWMEPECDKLMMAAIN--KNYVDMDE-----YPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAF 137 (494)
Q Consensus 65 ~~~~~p~~~~~~~~~~~--~~~~~~~~-----~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~ 137 (494)
+.+++|.+.+++.+.+. ....+... .....+..+++++++++++|.++ ..+++|+||++|+.+++.++
T Consensus 31 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-----~~v~~~~ggt~a~~~a~~~l 105 (423)
T 3lvm_A 31 TTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADP-----REIVFTSGATESDNLAIKGA 105 (423)
T ss_dssp CCCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCG-----GGEEEESSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCC-----CeEEEeCChHHHHHHHHHHH
Confidence 34567888888888776 43322211 12456677889999999999974 35999999999999999888
Q ss_pred HHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHH---cCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCC
Q 011057 138 KRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARY---FEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTL 214 (494)
Q Consensus 138 ~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~---~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~ 214 (494)
.+.+.. .+++|+++.++|.++..++.. .|++++.++++++ +.+|+++|++++++++++|++++++|+
T Consensus 106 ~~~~~~---------~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~np 175 (423)
T 3lvm_A 106 ANFYQK---------KGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRN-GIIDLKELEAAMRDDTILVSIMHVNNE 175 (423)
T ss_dssp HHHHTT---------TCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTT-SCCCHHHHHHHCCTTEEEEECCSBCTT
T ss_pred HHhhcc---------CCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCC-CccCHHHHHHhcCCCcEEEEEeCCCCC
Confidence 653211 136899999999998877744 4999999999874 789999999999999999999999999
Q ss_pred cccccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCC
Q 011057 215 NGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKE 294 (494)
Q Consensus 215 tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~ 294 (494)
||.+.|+++|.++|+++ |+++++|++|+.+..++ +....++|++++++||+ +++.|+|+++++++.
T Consensus 176 tG~~~~l~~i~~l~~~~------~~~li~Dea~~~~~~~~-------~~~~~~~di~~~s~sK~-~g~~g~G~~~~~~~~ 241 (423)
T 3lvm_A 176 IGVVQDIAAIGEMCRAR------GIIYHVDATQSVGKLPI-------DLSQLKVDLMSFSGHKI-YGPKGIGALYVRRKP 241 (423)
T ss_dssp TCBBCCHHHHHHHHHHH------TCEEEEECTTTTTTSCC-------CTTTSCCSEEEEESTTT-TSCSSCEEEEECBTT
T ss_pred CccccCHHHHHHHHHHc------CCEEEEEhhhhcCCCCc-------ChhhcCCCEEEechHHh-cCCCCeEEEEEeccc
Confidence 99999999999999999 99999999998764322 22223689999999995 567789999987642
Q ss_pred CcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCC--C
Q 011057 295 DLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDE--G 372 (494)
Q Consensus 295 ~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~--~ 372 (494)
.. . + ...+.+.........++.+.....++.++++.+... +++..++..++++++.+.|++++++++..++. .
T Consensus 242 ~~-~-~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 316 (423)
T 3lvm_A 242 RV-R-I--EAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEE-MATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGA 316 (423)
T ss_dssp BC-C-C--CCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTTBC
T ss_pred cC-C-C--CccccCCcccccccCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccC
Confidence 21 1 1 111111111111112444455566666677665443 78888999999999999999998898876542 2
Q ss_pred ccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCC-------------C---CCceEEEEEeccCCChHHHHHHHHH
Q 011057 373 VPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPAD-------------A---QHITVLRVVIREDFSRTLAERLVLD 436 (494)
Q Consensus 373 ~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~-------------~---~~~~~lRvs~~~~~t~~~id~~i~~ 436 (494)
.+++.|.+. +.+..++.+.|.+ +.+........ . ....++|++++..++.++++++++.
T Consensus 317 ~~~~~~~~~---~~~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~ 391 (423)
T 3lvm_A 317 PNILNVSFN---YVEGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIEL 391 (423)
T ss_dssp TTEEEEEET---TSCHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEeC---CCCHHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHH
Confidence 357888873 3477889988877 55433211000 0 0146899999988999999999999
Q ss_pred HHHHHHHHhcCc
Q 011057 437 ITKVLHELDSLP 448 (494)
Q Consensus 437 l~~~~~~l~~~~ 448 (494)
|+++++++++..
T Consensus 392 l~~~~~~~~~~~ 403 (423)
T 3lvm_A 392 VRKSIGRLRDLS 403 (423)
T ss_dssp HHHHHHHHHTSS
T ss_pred HHHHHHHhhccC
Confidence 999999887753
No 26
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.97 E-value=1.1e-29 Score=257.89 Aligned_cols=357 Identities=17% Similarity=0.125 Sum_probs=255.3
Q ss_pred CCcccccccCCChHHHHHHHHHHhcccCCCC--CC--Ch-hhHHHHHHHHHHHHHHhCC-CCCCCCCcceeeecChhHHH
Q 011057 57 RLNLASFVTTWMEPECDKLMMAAINKNYVDM--DE--YP-VTTELQNRCVNIIARLFNA-PLEDSETAVGVGTVGSSEAI 130 (494)
Q Consensus 57 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~--~~-~~~~le~~~~~~la~l~g~-~~~~~~~~~~~~t~ggt~a~ 130 (494)
.++|....+++.++.+.+++.+.+.....+. +. ++ .......++++++++++|. ++ ..+++|+||++|+
T Consensus 29 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~-----~~v~~~~g~t~a~ 103 (420)
T 1t3i_A 29 LVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSP-----REIVYTRNATEAI 103 (420)
T ss_dssp CEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCG-----GGEEEESSHHHHH
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCC-----CeEEEcCChHHHH
Confidence 3445555555667888888888876532211 11 21 1245667789999999998 33 3589999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchH----HHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEE
Q 011057 131 MLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVC----WEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICV 206 (494)
Q Consensus 131 ~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s----~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~v 206 (494)
.+++.++++... ..+++|+++.++|.+ +...++..|++++.++++++ +.+|+++|++++++++++|
T Consensus 104 ~~~~~~~~~~~~---------~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~v 173 (420)
T 1t3i_A 104 NLVAYSWGMNNL---------KAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQ-ESFDLEHFKTLLSEKTKLV 173 (420)
T ss_dssp HHHHHHTHHHHC---------CTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTT-SSBCHHHHHHHCCTTEEEE
T ss_pred HHHHHHhhhccc---------CCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCC-CCcCHHHHHHhhCCCceEE
Confidence 999888742210 012589999999987 67778889999999999754 7899999999999889999
Q ss_pred EEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceE
Q 011057 207 AAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIG 286 (494)
Q Consensus 207 v~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G 286 (494)
++++++|+||.+.|+++|.++|+++ |+++++|++|+.+..++ ++...++|++++++||. ++|.|+|
T Consensus 174 ~~~~~~nptG~~~~l~~i~~l~~~~------~~~li~D~a~~~~~~~~-------~~~~~~~di~~~s~sK~-~~~~g~G 239 (420)
T 1t3i_A 174 TVVHISNTLGCVNPAEEIAQLAHQA------GAKVLVDACQSAPHYPL-------DVQLIDCDWLVASGHKM-CAPTGIG 239 (420)
T ss_dssp EEESBCTTTCBBCCHHHHHHHHHHT------TCEEEEECTTTTTTSCC-------CHHHHTCSEEEEEGGGT-TSCTTCE
T ss_pred EEeCCcccccCcCCHHHHHHHHHHc------CCEEEEEhhhccCCccC-------chhhcCCCEEEEehhhh-cCCCceE
Confidence 9999999999999999999999999 99999999998764321 11112589999999994 5777899
Q ss_pred EEEEeCCCCcccccccccCCCC----------CCCCCccc-ccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHH
Q 011057 287 WVIWRNKEDLPEELIFHINYLG----------ADQPTFTL-NFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLK 355 (494)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~y~~----------~~~~~~~~-~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~ 355 (494)
+++++++ .+.........+.. .......+ .++.+....+++.++++.+...+++++.++..++++++.
T Consensus 240 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~ 318 (420)
T 1t3i_A 240 FLYGKEE-ILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLW 318 (420)
T ss_dssp EEEECHH-HHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred EEEEchH-HHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9887642 22111011100000 00000111 134444555556667777776678888999999999999
Q ss_pred HHHhhCCCeEEeecC----CCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCC----CCC-ceEEEEEeccCCC
Q 011057 356 EGLEKTGRFNIVSKD----EGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPAD----AQH-ITVLRVVIREDFS 426 (494)
Q Consensus 356 ~~L~~~~~~~~~~~~----~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~----~~~-~~~lRvs~~~~~t 426 (494)
+.|++++++++..+. ...++++|.+++ .+..++.+.|.++|+.+.....+.. ..+ ..++|++++..++
T Consensus 319 ~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~~ 395 (420)
T 1t3i_A 319 QGLGQIPQLRLYGPNPKHGDRAALASFNVAG---LHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNT 395 (420)
T ss_dssp HHHHTCTTEEEESCCGGGSCBCSEEEEEETT---BCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCC
T ss_pred HHHHhCCCeEEeCCCccccccCCEEEEEECC---CCHHHHHHHHHHCCeEEeeccccchHHHHhcCCCCeEEEecCCCCC
Confidence 999999779887653 136788888743 4678899999999998754321100 012 4579999998889
Q ss_pred hHHHHHHHHHHHHHHHHHhc
Q 011057 427 RTLAERLVLDITKVLHELDS 446 (494)
Q Consensus 427 ~~~id~~i~~l~~~~~~l~~ 446 (494)
.++++++++.|+++++.+++
T Consensus 396 ~~~i~~~~~~l~~~~~~~~~ 415 (420)
T 1t3i_A 396 KEEIDLFLQSLQATIRFFSD 415 (420)
T ss_dssp HHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999887654
No 27
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.97 E-value=8.5e-30 Score=255.51 Aligned_cols=334 Identities=17% Similarity=0.063 Sum_probs=250.4
Q ss_pred CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHH
Q 011057 67 WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRK 146 (494)
Q Consensus 67 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~ 146 (494)
+.+|.+.+++.+.+.. ..++...++.+++++++++++|.+.+ ...+++|+||++|+. ++.++..
T Consensus 12 ~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~~~~~la~~~~~~~~---~~~v~~~~g~t~al~-~~~~~~~------- 75 (384)
T 3zrp_A 12 TIKEDVLVAGLENNVG-----FTSKEFVEALAYSLKGLRYVMGASKN---YQPLIIPGGGTSAME-SVTSLLK------- 75 (384)
T ss_dssp CCCHHHHHHTTCCSCC-----TTSHHHHHHHHHHHHHHHHHHTCCTT---SEEEEEESCHHHHHH-HGGGGCC-------
T ss_pred CCCHHHHHHhhccccc-----cccHHHHHHHHHHHHHHHHHhCCCCC---CcEEEEcCCcHHHHH-HHHhhcC-------
Confidence 4567777666544321 13456677888999999999999751 135899999999999 7765521
Q ss_pred hcCCCCCCCeEEeCCCcchH--HHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhh-CCeEEEEeeCCCCcccccCHHH
Q 011057 147 AEGKPFDKPNIVTGANVQVC--WEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDE-NTICVAAILGSTLNGEFEDVKL 223 (494)
Q Consensus 147 ~~g~~~~~~~vi~~~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~t~~vv~~~~~~~tG~~~~l~~ 223 (494)
.+++|+++.+.|++ +...++..|++++.++++++ +.+|+++|++++++ ++++|++++++|+||.+.|+++
T Consensus 76 ------~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~ 148 (384)
T 3zrp_A 76 ------PNDKILVVSNGVFGDRWEQIFKRYPVNVKVLRPSPG-DYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKD 148 (384)
T ss_dssp ------TTCEEEEECSSHHHHHHHHHHTTSSCEEEEECCSTT-CCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHH
T ss_pred ------CCCEEEEecCCcchHHHHHHHHHcCCcEEEecCCCC-CCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHH
Confidence 13589998888865 66777888999999999875 68999999999998 7899999999999999999999
Q ss_pred HHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCccccc-cc
Q 011057 224 LNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEEL-IF 302 (494)
Q Consensus 224 I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~-~~ 302 (494)
|.++|+++ |+++++|++|+.+..++ ++...++|++++++||+++++.|+|+++++++ .+ ..+ ..
T Consensus 149 i~~l~~~~------~~~li~D~a~~~~~~~~-------~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~-~~-~~~~~~ 213 (384)
T 3zrp_A 149 VINKIRKY------VELIVVDGVSSVGAEEV-------KAEEWNVDVYLTASQKALGSAAGLGLLLLSPK-AL-SILDSQ 213 (384)
T ss_dssp HHHHHGGG------EEEEEEECTTTTTTSCC-------CTTTTTCSEEEEETTSTTCCCSSEEEEEECHH-HH-HHHHHC
T ss_pred HHHHHHhc------CCEEEEECcccccCccc-------cccccCCCEEEecCcccccCCCceEEEEECHH-HH-HHhcCC
Confidence 99999999 99999999998764322 22223689999999999988899999988653 21 111 00
Q ss_pred --ccCCCCCCC-------C----CcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeec
Q 011057 303 --HINYLGADQ-------P----TFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSK 369 (494)
Q Consensus 303 --~~~y~~~~~-------~----~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~ 369 (494)
...|..... . .....++.+.....++.+++..+...+++++.++..++++++.+.|+++ ++++..+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 292 (384)
T 3zrp_A 214 NSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL-GLEIVAR 292 (384)
T ss_dssp CCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSCS
T ss_pred CCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCeEccC
Confidence 000100000 0 0000135555667777788888877788999999999999999999999 5887655
Q ss_pred C---CCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHHhc
Q 011057 370 D---EGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDS 446 (494)
Q Consensus 370 ~---~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~~ 446 (494)
. ....++.|.+++ .+..++.+.|.++|+.+....... ..++|+++...++.++++++++.|+++++++..
T Consensus 293 ~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~g~~~~----~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~ 365 (384)
T 3zrp_A 293 RPESYSNTVTGVILKV---ADPQKVLAGTVNEGVEFAPGVHPA----FKYFRIGHMGWVTPNDAIIAISVIERTLRKLGE 365 (384)
T ss_dssp SGGGBCSSEEEEECSS---SCHHHHHHHHHTTTCCCEECCCTT----CCEEEEECCSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred cccccCccEEEEECCC---CCHHHHHHHHHHCCEEEecCCCCC----cCEEEEeccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 3 134677788743 578899999999999875433111 168999999889999999999999999988754
No 28
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.97 E-value=2.3e-29 Score=254.34 Aligned_cols=349 Identities=17% Similarity=0.163 Sum_probs=251.5
Q ss_pred ccccccCCChHHHHHHHHHHhcccCCCCCC--Ch---hhHHHHHHHHHHHHHHhCC-CCCCCCCcceeeecChhHHHHHH
Q 011057 60 LASFVTTWMEPECDKLMMAAINKNYVDMDE--YP---VTTELQNRCVNIIARLFNA-PLEDSETAVGVGTVGSSEAIMLA 133 (494)
Q Consensus 60 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~---~~~~le~~~~~~la~l~g~-~~~~~~~~~~~~t~ggt~a~~~a 133 (494)
|....+++.++.+.+++.+.+.....++.. +. .......++++++++++|. ++ ..+++|+|+|+|+.++
T Consensus 27 l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-----~~v~~~~g~t~a~~~~ 101 (406)
T 1kmj_A 27 LDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSA-----EELVFVRGTTEGINLV 101 (406)
T ss_dssp CCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCG-----GGEEEESSHHHHHHHH
T ss_pred ecCCccCCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCC-----CeEEEeCChhHHHHHH
Confidence 333334456678888888887654322221 11 2456667899999999998 33 3589999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchH----HHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEe
Q 011057 134 GLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVC----WEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAI 209 (494)
Q Consensus 134 ~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s----~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~ 209 (494)
+.++++... . .+++|+++.++|.+ +...++..|++++.++++++ +.+|+++|++++++++++|+++
T Consensus 102 ~~~~~~~~~------~---~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~l~~~~~~v~~~ 171 (406)
T 1kmj_A 102 ANSWGNSNV------R---AGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPD-GTLQLETLPTLFDEKTRLLAIT 171 (406)
T ss_dssp HHHTHHHHC------C---TTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTT-SCBCGGGHHHHCCTTEEEEEEE
T ss_pred HHHhhhhcC------C---CCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCC-CCcCHHHHHHHhccCCeEEEEe
Confidence 888743210 0 12589999998864 44567788999999998764 7899999999999889999999
Q ss_pred eCCCCcccccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEE
Q 011057 210 LGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVI 289 (494)
Q Consensus 210 ~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~ 289 (494)
+++|+||.+.|+++|.++|+++ ++++++|++|+.+..++ ++...+.|+++.++||++ +|.|+|+++
T Consensus 172 ~~~nptG~~~~l~~i~~l~~~~------~~~li~D~~~~~g~~~~-------~~~~~~~d~~~~s~~K~~-g~~G~G~~~ 237 (406)
T 1kmj_A 172 HVSNVLGTENPLAEMITLAHQH------GAKVLVDGAQAVMHHPV-------DVQALDCDFYVFSGHKLY-GPTGIGILY 237 (406)
T ss_dssp SBCTTTCCBCCHHHHHHHHHHT------TCEEEEECTTTTTTSCC-------CHHHHTCSEEEEEGGGTT-SCTTCEEEE
T ss_pred CCCccccCcCCHHHHHHHHHHc------CCEEEEEchhhcCCCCC-------cccccCCCEEEEEchhcc-CCCCcEEEE
Confidence 9999999999999999999999 99999999998764322 111125899999999987 777899998
Q ss_pred EeCCCCcccccccccCCCCCC--------------CCCccc-ccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHH
Q 011057 290 WRNKEDLPEELIFHINYLGAD--------------QPTFTL-NFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVL 354 (494)
Q Consensus 290 ~~~~~~~~~~~~~~~~y~~~~--------------~~~~~~-~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l 354 (494)
++++ .. +.+... ..++. .....+ .++.+....+++.++++.+...++++..++..++++++
T Consensus 238 ~~~~-~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l 313 (406)
T 1kmj_A 238 VKEA-LL-QEMPPW--EGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYA 313 (406)
T ss_dssp ECHH-HH-HHCCCS--SCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred EeHH-HH-hhcCCc--ccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 8642 22 111110 00000 000011 13444455555657777776667888899999999999
Q ss_pred HHHHhhCCCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCC-----CCCceEEEEEeccCCChHH
Q 011057 355 KEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPAD-----AQHITVLRVVIREDFSRTL 429 (494)
Q Consensus 355 ~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~-----~~~~~~lRvs~~~~~t~~~ 429 (494)
.+.|++++++++..+....++++|.++ +.+..++.+.|.++|+.+........ .....++|++++..+|.++
T Consensus 314 ~~~L~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~ 390 (406)
T 1kmj_A 314 LSQLESVPDLTLYGPQNRLGVIAFNLG---KHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEE 390 (406)
T ss_dssp HHHHTTSTTEEEESCTTCCSEEEEEET---TCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHH
T ss_pred HHHHhcCCCeEEecCCCcCCEEEEEEC---CCCHHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEeecCCCHHH
Confidence 999999977887755213678888874 24678899999999998754321100 0113689999998889999
Q ss_pred HHHHHHHHHHHHHHH
Q 011057 430 AERLVLDITKVLHEL 444 (494)
Q Consensus 430 id~~i~~l~~~~~~l 444 (494)
++++++.|+++++.+
T Consensus 391 i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 391 VDRLVTGLQRIHRLL 405 (406)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988765
No 29
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.97 E-value=1.4e-29 Score=255.12 Aligned_cols=336 Identities=13% Similarity=0.073 Sum_probs=245.0
Q ss_pred CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHH
Q 011057 67 WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRK 146 (494)
Q Consensus 67 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~ 146 (494)
+++|.+.+++.+.+.. .+ ++.......++++++++++|.+.+ ..+++|+||++|+.+++.++..
T Consensus 29 ~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~l~~~la~~~g~~~~----~~i~~~~g~t~a~~~~~~~~~~------- 92 (393)
T 2huf_A 29 NAPQRVLDAMSRPILG---HL--HPETLKIMDDIKEGVRYLFQTNNI----ATFCLSASGHGGMEATLCNLLE------- 92 (393)
T ss_dssp CCCHHHHHHTTSCCCC---TT--SHHHHHHHHHHHHHHHHHHTCCCS----EEEEESSCHHHHHHHHHHHHCC-------
T ss_pred CCCHHHHHHHHhhhcc---CC--CHHHHHHHHHHHHHHHHHhCCCCC----cEEEEcCcHHHHHHHHHHHHhC-------
Confidence 4567777777655542 12 345567778899999999998641 2588999999999998887732
Q ss_pred hcCCCCCCCeEEeCCCcchHH--HHHHHHcCCeeEEEeccCCccccCHHHHHHhhhh-CCeEEEEeeCCCCcccccCHHH
Q 011057 147 AEGKPFDKPNIVTGANVQVCW--EKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDE-NTICVAAILGSTLNGEFEDVKL 223 (494)
Q Consensus 147 ~~g~~~~~~~vi~~~~~h~s~--~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~t~~vv~~~~~~~tG~~~~l~~ 223 (494)
.+++|+++.++|++. ...++..|++++.++++++ +.+|+++|++++++ ++++|++++++|+||.+.|+++
T Consensus 93 ------~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~ 165 (393)
T 2huf_A 93 ------DGDVILIGHTGHWGDRSADMATRYGADVRVVKSKVG-QSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEG 165 (393)
T ss_dssp ------TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTT
T ss_pred ------CCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCCC-CCCCHHHHHHHHhccCCcEEEEEccCCCccccCCHHH
Confidence 125899999999873 3456678999999999765 68999999999988 8999999999999999999999
Q ss_pred HHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccccc
Q 011057 224 LNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFH 303 (494)
Q Consensus 224 I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~ 303 (494)
|.++|+++ |+++|+|++++.+..++ ++...++|++++++||+++++.|+|+++++++ .+ ..+...
T Consensus 166 i~~~~~~~------~~~li~D~a~~~~~~~~-------~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~~-~~-~~~~~~ 230 (393)
T 2huf_A 166 VGALCHQH------NCLLIVDTVASLGGAPM-------FMDRWEIDAMYTGSQKVLGAPPGITPVSFSHR-AV-ERYKRR 230 (393)
T ss_dssp HHHHHHHT------TCEEEEECTTTBTTBCC-------CTTTTTCSEEECCSSSTTCCCSSCEEEEECHH-HH-HHHHTC
T ss_pred HHHHHHHc------CCEEEEEcccccCCCCc-------chhhcCccEEEECCCcccccCCCeEEEEECHH-HH-HHHhhc
Confidence 99999999 99999999997653321 22223689999999999888889999988642 22 111110
Q ss_pred ----cCC----------CCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeec
Q 011057 304 ----INY----------LGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSK 369 (494)
Q Consensus 304 ----~~y----------~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~ 369 (494)
..| .+.........++.+.....++.++++.+..+++++..++..++++++.+.|+++ ++++..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 309 (393)
T 2huf_A 231 NTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDA-GFELYAD 309 (393)
T ss_dssp SSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSC
T ss_pred CCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccC
Confidence 111 1110000111245555566666677777766678888999999999999999998 5877654
Q ss_pred CC--CccEEEEEecCCCCCCHHHHHHHHHhc-CceeeccccCCCCCCceEEEEEeccC-CChHHHHHHHHHHHHHHHHHh
Q 011057 370 DE--GVPLVAFSLKDNKRHDEFEVAELLRRF-GWIVPAYTMPADAQHITVLRVVIRED-FSRTLAERLVLDITKVLHELD 445 (494)
Q Consensus 370 ~~--~~~~v~f~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRvs~~~~-~t~~~id~~i~~l~~~~~~l~ 445 (494)
+. ...++.+.++ .+.+..++.++|.++ |+.+.....+ .+..++|++++.. +++++++++++.|++++++++
T Consensus 310 ~~~~~~~~~~~~~~--~~~~~~~~~~~L~~~~gi~v~~g~~~---~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~ 384 (393)
T 2huf_A 310 PKDRLSTVTTIKVP--QGVDWLKAAQYAMKTYLVEISGGLGP---TAGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVK 384 (393)
T ss_dssp GGGBCTTEEEEECC--TTCCHHHHHHHHHHHHCEECBCCCGG---GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred ccccCCcEEEEEcC--CCCCHHHHHHHHHHhCCEEEecCccc---ccCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcC
Confidence 21 2347778774 245788999999865 9987543221 1345799999544 578889999999999988775
Q ss_pred c
Q 011057 446 S 446 (494)
Q Consensus 446 ~ 446 (494)
.
T Consensus 385 ~ 385 (393)
T 2huf_A 385 P 385 (393)
T ss_dssp C
T ss_pred C
Confidence 4
No 30
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.97 E-value=1.2e-29 Score=251.47 Aligned_cols=330 Identities=15% Similarity=0.102 Sum_probs=243.3
Q ss_pred CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHH
Q 011057 67 WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRK 146 (494)
Q Consensus 67 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~ 146 (494)
+++|.+.+++.+.+.. ..++.......++++++++++|.++ ..+++|+||++|+.+++.++..
T Consensus 11 ~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g~~~-----~~i~~~~g~t~a~~~~~~~~~~------- 73 (352)
T 1iug_A 11 RLHPKALEALARPQLH-----HRTEAAREVFLKARGLLREAFRTEG-----EVLILTGSGTLAMEALVKNLFA------- 73 (352)
T ss_dssp CCCHHHHHHHHSCCCC-----TTSHHHHHHHHHHHHHHHHHHTCSS-----EEEEEESCHHHHHHHHHHHHCC-------
T ss_pred CCCHHHHHHhccCCCC-----ccCHHHHHHHHHHHHHHHHHhCCCC-----ceEEEcCchHHHHHHHHHhccC-------
Confidence 4567888888766542 2345666777889999999999974 3589999999999998887732
Q ss_pred hcCCCCCCCeEEeCCCcchHHH--HHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHH
Q 011057 147 AEGKPFDKPNIVTGANVQVCWE--KFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLL 224 (494)
Q Consensus 147 ~~g~~~~~~~vi~~~~~h~s~~--~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I 224 (494)
.+++|+++.++|+++. ..++..|++++.++++++ +.+|+++|++ +++++|++++++|+||.+.|+++|
T Consensus 74 ------~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~---~~~~~v~~~~~~nptG~~~~l~~i 143 (352)
T 1iug_A 74 ------PGERVLVPVYGKFSERFYEIALEAGLVVERLDYPYG-DTPRPEDVAK---EGYAGLLLVHSETSTGALADLPAL 143 (352)
T ss_dssp ------TTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCTTTSCC---SSCSEEEEESEETTTTEECCHHHH
T ss_pred ------CCCeEEEEeCCchhHHHHHHHHHcCCceEEEeCCCC-CCCCHHHHhc---cCCcEEEEEEecCCcceecCHHHH
Confidence 1258999999998864 455668999999999764 6789988877 678899999999999999999999
Q ss_pred HHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCccccccccc
Q 011057 225 NDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHI 304 (494)
Q Consensus 225 ~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~ 304 (494)
.++|+++++ |+++++|++|+.+..++ ++...++|++++++|||+++|.|+|+++++++. + ..+....
T Consensus 144 ~~l~~~~~~----~~~li~D~a~~~~~~~~-------~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~-~-~~~~~~~ 210 (352)
T 1iug_A 144 ARAFKEKNP----EGLVGADMVTSLLVGEV-------ALEAMGVDAAASGSQKGLMCPPGLGFVALSPRA-L-ERLKPRG 210 (352)
T ss_dssp HHHHHHHCT----TCEEEEECTTTBTTBCC-------CSGGGTCSEEEEESSSTTCCCSCEEEEEECHHH-H-HTCCCCS
T ss_pred HHHHHhhCC----CCEEEEECCccccCcce-------eccccCeeEEEecCcccccCCCceeEEEECHHH-H-HHhhCCC
Confidence 999999832 79999999998654322 111125899999999999999999999986532 1 1100000
Q ss_pred CC------CCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccEEEE
Q 011057 305 NY------LGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAF 378 (494)
Q Consensus 305 ~y------~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f 378 (494)
.| ..... .....++.+.....++.++++.+... ++++.++..++++++.+.|+++ ++++..+....+++.|
T Consensus 211 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~ 287 (352)
T 1iug_A 211 YYLDLARELKAQK-EGESAWTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEG-GLRPVPKRFSPAVAAF 287 (352)
T ss_dssp STTCHHHHHHHHT-TTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHT-TCEESCSSBCTTCEEE
T ss_pred ceeeHHHHHhhcc-cCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC-CCcccccccCCeEEEE
Confidence 00 00000 00112344445556666777766555 7888899999999999999998 5887654213567888
Q ss_pred EecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHH
Q 011057 379 SLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHEL 444 (494)
Q Consensus 379 ~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l 444 (494)
.++. +.+..++.++|.++|+.+.....+ .+..++|++++..++.++++++++.|+++++++
T Consensus 288 ~~~~--~~~~~~~~~~l~~~gi~v~~~~~~---~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 288 YLPE--GVPYARVKEAFAQRGAVIAGGQGP---LKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp ECCT--TCCHHHHHHHHHTTTEECEECCGG---GTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred EcCC--CCCHHHHHHHHHHCCEEEEeCCCc---cCCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence 8742 457889999999999987654322 234579999998889999999999999988765
No 31
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.97 E-value=1.9e-29 Score=255.19 Aligned_cols=339 Identities=13% Similarity=0.046 Sum_probs=237.4
Q ss_pred CCChHHHHHHHHHHhcccCCCC-CCCh---hhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHH
Q 011057 66 TWMEPECDKLMMAAINKNYVDM-DEYP---VTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKW 141 (494)
Q Consensus 66 ~~~~p~~~~~~~~~~~~~~~~~-~~~~---~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~ 141 (494)
+++++.+.+++.+.+.....+. ..++ .......++++++++++|.++ ..+++|+|+++++.+++.++.+.+
T Consensus 36 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~-----~~v~~~~g~t~al~~~~~~l~~~~ 110 (406)
T 3cai_A 36 MLIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADP-----GGVVLGADRAVLLSLLAEASSSRA 110 (406)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCG-----GGEEEESCHHHHHHHHHHHTGGGG
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCC-----CeEEEeCChHHHHHHHHHHHhhcc
Confidence 3567888888888876533222 1232 245677789999999999864 358999999999987776652111
Q ss_pred HHHHHhcCCCCCCCeEEeCCCcchHHHHHH----HHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCccc
Q 011057 142 QNKRKAEGKPFDKPNIVTGANVQVCWEKFA----RYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGE 217 (494)
Q Consensus 142 ~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~----~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~ 217 (494)
. .+++|+++.++|.++...+ +..|++++.++++++++.+|+++|++++++++++|++++++|+||.
T Consensus 111 ~----------~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~ 180 (406)
T 3cai_A 111 G----------LGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISKSTRLVAVNSASGTLGG 180 (406)
T ss_dssp B----------TTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCTTEEEEEEESBCTTTCB
T ss_pred C----------CCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCCCceEEEEeCCcCCccc
Confidence 0 1258999999998754443 3379999999988434789999999999988999999999999999
Q ss_pred ccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceE-EEEEeCCCCc
Q 011057 218 FEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIG-WVIWRNKEDL 296 (494)
Q Consensus 218 ~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G-~~~~~~~~~~ 296 (494)
+.|+++|.++|+++ |+++++|++|+.+..++ ++...++|++++++||+++ |. +| ++++++. ..
T Consensus 181 ~~~l~~i~~l~~~~------~~~li~D~a~~~g~~~~-------~~~~~~~d~~~~s~~K~~g-~~-~G~~~~~~~~-~~ 244 (406)
T 3cai_A 181 VTDLRAMTKLVHDV------GALVVVDHSAAAPYRLL-------DIRETDADVVTVNAHAWGG-PP-IGAMVFRDPS-VM 244 (406)
T ss_dssp BCCCHHHHHHHHHT------TCEEEEECTTTTTTCCC-------CHHHHCCSEEEEEGGGGTS-CS-CEEEEESCHH-HH
T ss_pred cCCHHHHHHHHHHc------CCEEEEEcccccCCCCC-------CchhcCCCEEEeehhhhcC-CC-cCeEEEEehH-HH
Confidence 99999999999999 99999999998654322 1111258999999999864 54 78 8776542 21
Q ss_pred ccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHh--------------HHHHHHHHHHHHHHHHHHHHhhCC
Q 011057 297 PEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFE--------------GYRNVMENCHENAMVLKEGLEKTG 362 (494)
Q Consensus 297 ~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~--------------g~~~~~~~~~~~a~~l~~~L~~~~ 362 (494)
..+.....+.+.........++.+.....++.++++.+... .++++.++..++++++.+.|++++
T Consensus 245 -~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 323 (406)
T 3cai_A 245 -NSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLP 323 (406)
T ss_dssp -HTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred -hhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 11111111111110000012444445555566666655432 367888889999999999999987
Q ss_pred CeEEeecCC-CccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccC------CCCCCceEEEEEeccCCChHHHHHHHH
Q 011057 363 RFNIVSKDE-GVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMP------ADAQHITVLRVVIREDFSRTLAERLVL 435 (494)
Q Consensus 363 ~~~~~~~~~-~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~------~~~~~~~~lRvs~~~~~t~~~id~~i~ 435 (494)
++++..+.. ..+++.|.+.+ .+..++.+.|.++||.+.....+ ....+..++|++++..++.++++++++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~ 400 (406)
T 3cai_A 324 LVMLIGRPEAQIPVVSFAVHK---VPADRVVQRLADNGILAIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVR 400 (406)
T ss_dssp TEEECCCCSSBCSEEEEEETT---BCHHHHHHHHHHTTEECEECCSCHHHHHHTTTTTTCCEEEECCTTCCHHHHHHHHH
T ss_pred CeEEcCCccccCCEEEEEECC---cCHHHHHHHHHHCCcEEecCChHHHHHHcCCCCCCCeEEEEeecCCCHHHHHHHHH
Confidence 788775431 35688888753 46789999999999988543200 001124679999998889999988887
Q ss_pred HHHH
Q 011057 436 DITK 439 (494)
Q Consensus 436 ~l~~ 439 (494)
.|++
T Consensus 401 ~l~~ 404 (406)
T 3cai_A 401 ALAS 404 (406)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7764
No 32
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.97 E-value=9e-30 Score=262.51 Aligned_cols=313 Identities=11% Similarity=-0.038 Sum_probs=234.9
Q ss_pred hhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchH----
Q 011057 91 PVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVC---- 166 (494)
Q Consensus 91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s---- 166 (494)
+....+.+++++++++++|.++ ..+++|+|+|+++.+++.++.+. +..+++|+++.++|.+
T Consensus 107 ~~~~~~~~~l~~~la~~~g~~~-----~~v~~t~g~t~al~~~~~~~~~~----------~~~~~~Vl~~~~~~~s~~~~ 171 (465)
T 3e9k_A 107 RPWITGDESIVGLMKDIVGANE-----KEIALMNALTVNLHLLMLSFFKP----------TPKRYKILLEAKAFPSDHYA 171 (465)
T ss_dssp SCGGGTTHHHHGGGHHHHTCCG-----GGEEECSCHHHHHHHHHHHHCCC----------CSSSCEEEEETTCCHHHHHH
T ss_pred ccHHHhHHHHHHHHHHHcCCCc-----CCEEEECCHHHHHHHHHHHhccc----------cCCCCEEEEcCCcCCchHHH
Confidence 3455666778999999999975 45899999999999888877321 1123579999999977
Q ss_pred HHHHHHHcCCeeE-----EEeccCCccccCHHHHHHhhh---hCCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCC
Q 011057 167 WEKFARYFEVELK-----EVKLSEGYYVMDPVKAVEMVD---ENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWD 238 (494)
Q Consensus 167 ~~~~~~~~G~~v~-----~v~~~~~~~~~d~~~L~~~i~---~~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~ 238 (494)
+...++..|++++ .++.++ ++.+|+++|+++|+ +++++|++++++|+||.+.|+++|.++|+++ |
T Consensus 172 ~~~~~~~~G~~~~~~~v~~~~~~~-~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~------g 244 (465)
T 3e9k_A 172 IESQLQLHGLNIEESMRMIKPREG-EETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAK------G 244 (465)
T ss_dssp HHHHHHHTTCCHHHHEEEECCCTT-CSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHT------T
T ss_pred HHHHHHHcCCcceeeeEEEecCCC-CCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHc------C
Confidence 4446778898852 334444 47899999999997 5789999999999999999999999999999 9
Q ss_pred ceEEEecccccccccccCCcccccccCCCceEEEEcCcccCC-cCCceEEEEEeCCCCcccccccccCCCCCCC------
Q 011057 239 TPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGL-VYAGIGWVIWRNKEDLPEELIFHINYLGADQ------ 311 (494)
Q Consensus 239 ~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~------ 311 (494)
+++++|+||+.+..++ ++...++|++++++||+++ +|.|+|+++++++. ..........|.++..
T Consensus 245 ~~vi~D~a~~~g~~~~-------~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~-~~~~~~~~~g~~~~~~~~~~~~ 316 (465)
T 3e9k_A 245 CYVGFDLAHAVGNVEL-------YLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKH-AHTIKPALVGWFGHELSTRFKM 316 (465)
T ss_dssp CEEEEECTTTTTTSCC-------CHHHHTCCEEEECSSSTTCCCTTCCCEEEECGGG-TTTSCCSSCCGGGBCHHHHTTC
T ss_pred CEEEEEhhhhcCCcCC-------chhhcCCCEEEECcccccccCCCceEEEEEcHHH-HhhcCCcccCccCCCCCccccc
Confidence 9999999999875533 2222368999999999995 67778999886542 2111111112211100
Q ss_pred ---CC------cccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhC----------CCeEEeecCC-
Q 011057 312 ---PT------FTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKT----------GRFNIVSKDE- 371 (494)
Q Consensus 312 ---~~------~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~----------~~~~~~~~~~- 371 (494)
.. ....++.+...++++.++++.+...+++++.++..++++++.+.|+++ ++++++.+..
T Consensus 317 ~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~ 396 (465)
T 3e9k_A 317 DNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHV 396 (465)
T ss_dssp CSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSG
T ss_pred CCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCH
Confidence 00 001246677778889999999888889999999999999999999985 6798886542
Q ss_pred --CccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEe-ccCCChHHHHHHHHHHHHHHHHH
Q 011057 372 --GVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVI-REDFSRTLAERLVLDITKVLHEL 444 (494)
Q Consensus 372 --~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~-~~~~t~~~id~~i~~l~~~~~~l 444 (494)
+.++++|.+.. +..++.++|.++|+.+.. .+..++|+++ ..++|.+|++++++.|+++++..
T Consensus 397 ~~~g~~~~~~~~~----~~~~l~~~L~~~Gi~v~~-------~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 397 EERGCQLTITFSV----PNKDVFQELEKRGVVCDK-------RNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDSA 461 (465)
T ss_dssp GGBCSCEEEEECC----TTCCHHHHHHTTTEECEE-------ETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC-
T ss_pred hhcccEEEEEecC----CHHHHHHHHHHCCEEEec-------CCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHhc
Confidence 36788888852 345799999999998741 2235799998 78999999999999999887643
No 33
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.97 E-value=2.9e-29 Score=252.40 Aligned_cols=336 Identities=12% Similarity=0.082 Sum_probs=246.1
Q ss_pred CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHH
Q 011057 67 WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRK 146 (494)
Q Consensus 67 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~ 146 (494)
..++.+.+++.+.+ .. ..++...++..++++++++++|.+.. ..+++|+||++|+.+++.++..
T Consensus 33 ~~~~~v~~a~~~~~----~~-~~~~~~~~~~~~l~~~la~~~~~~~~----~~v~~~~gg~~al~~~~~~~~~------- 96 (393)
T 3kgw_A 33 NLAPRVLAAGSLRM----IG-HMQKEMLQIMEEIKQGIQYVFQTRNP----LTLVVSGSGHCAMETALFNLLE------- 96 (393)
T ss_dssp CCCHHHHHHTTCCC----CC-TTSHHHHHHHHHHHHHHHHHHTCCCS----EEEEESCCTTTHHHHHHHHHCC-------
T ss_pred CCCHHHHHHhcccc----cC-cccHHHHHHHHHHHHHHHHHhCCCCC----cEEEEeCCcHHHHHHHHHhcCC-------
Confidence 34566666554322 11 23456677888899999999998741 3478999999999988887732
Q ss_pred hcCCCCCCCeEEeCCCcch--HHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhh-CCeEEEEeeCCCCcccccCHHH
Q 011057 147 AEGKPFDKPNIVTGANVQV--CWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDE-NTICVAAILGSTLNGEFEDVKL 223 (494)
Q Consensus 147 ~~g~~~~~~~vi~~~~~h~--s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~t~~vv~~~~~~~tG~~~~l~~ 223 (494)
.+++|+++...|+ .+...++..|++++.++++++ +.+|+++|++++++ ++++|++++++|+||.+.|+++
T Consensus 97 ------~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~ 169 (393)
T 3kgw_A 97 ------PGDSFLTGTNGIWGMRAAEIADRIGARVHQMIKKPG-EHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDG 169 (393)
T ss_dssp ------TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTT
T ss_pred ------CCCEEEEEeCCchhHHHHHHHHHcCCceEEEeCCCC-CCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccHHH
Confidence 1257888877775 447788889999999999865 68999999999998 8999999999999999999999
Q ss_pred HHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCccccccc-
Q 011057 224 LNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIF- 302 (494)
Q Consensus 224 I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~- 302 (494)
|.++|+++ |+++++|++|+.+..++ ++...++|++++++||+++++.|+|+++++++ .+ +.+..
T Consensus 170 i~~l~~~~------~~~li~De~~~~g~~~~-------~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~-~~-~~~~~~ 234 (393)
T 3kgw_A 170 FGELCHRY------QCLLLVDSVASLGGVPI-------YMDQQGIDIMYSSSQKVLNAPPGISLISFNDK-AK-YKVYSR 234 (393)
T ss_dssp HHHHHHHT------TCEEEEECTTTTTTSCC-------CTTTTTCCEEEEESSSTTCCCSSCEEEEECHH-HH-HHHHTC
T ss_pred HHHHHHHc------CCEEEEECCccccCccc-------chhhcCCCEEEecCcccccCCCceeEEEECHH-HH-HHHhcc
Confidence 99999999 99999999998543322 22223689999999999988999999988653 21 11110
Q ss_pred ccC-------------CCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeec
Q 011057 303 HIN-------------YLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSK 369 (494)
Q Consensus 303 ~~~-------------y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~ 369 (494)
... +.+.........++.+.....++.++++.+..+++++..++..++++++.+.|+++ ++++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 313 (393)
T 3kgw_A 235 KTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM-GLKFFVK 313 (393)
T ss_dssp SSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSS
T ss_pred CCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccC
Confidence 000 11111111112245555666777788888777788999999999999999999999 4877633
Q ss_pred CC---CccEEEEEecCCCCCCHHHHHHHHHhc-CceeeccccCCCCCCceEEEEEe-ccCCChHHHHHHHHHHHHHHHHH
Q 011057 370 DE---GVPLVAFSLKDNKRHDEFEVAELLRRF-GWIVPAYTMPADAQHITVLRVVI-REDFSRTLAERLVLDITKVLHEL 444 (494)
Q Consensus 370 ~~---~~~~v~f~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRvs~-~~~~t~~~id~~i~~l~~~~~~l 444 (494)
.. ...++.|.+. .+.+..++.++|.++ |+.+.....+ ....++|+++ ....++++++++++.|+++++++
T Consensus 314 ~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~gi~v~~g~~~---~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~ 388 (393)
T 3kgw_A 314 DPEIRLPTITTVTVP--AGYNWRDIVSYVLDHFSIEISGGLGP---TEERVLRIGLLGYNATTENVDRVAEALREALQHC 388 (393)
T ss_dssp SGGGBCSSEEEEECC--TTBCHHHHHHHHHHHHCEECBCCCGG---GTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHS
T ss_pred ChhhcCCeEEEEeCC--CCCCHHHHHHHHHHhCCEEEeCCccc---CCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhh
Confidence 21 2345567763 246788999999988 9987543322 2345799998 44458999999999999998776
Q ss_pred hc
Q 011057 445 DS 446 (494)
Q Consensus 445 ~~ 446 (494)
.+
T Consensus 389 ~~ 390 (393)
T 3kgw_A 389 PK 390 (393)
T ss_dssp CB
T ss_pred hh
Confidence 43
No 34
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.97 E-value=5.6e-29 Score=250.71 Aligned_cols=333 Identities=14% Similarity=0.045 Sum_probs=244.8
Q ss_pred cCCChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHH
Q 011057 65 TTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNK 144 (494)
Q Consensus 65 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~ 144 (494)
+.+.++.+.+++.+.+.. .+ .+...++.+++++++++++|.+++ ..+++|+||++|+.+++.++..+
T Consensus 42 ~~~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~~~~~la~~~g~~~~----~~v~~t~g~t~al~~~~~~~~~~---- 108 (393)
T 1vjo_A 42 PSNAHPSVLQAMNVSPVG---HL--DPAFLALMDEIQSLLRYVWQTENP----LTIAVSGTGTAAMEATIANAVEP---- 108 (393)
T ss_dssp CCCCCHHHHHHHSSCCCC---TT--SHHHHHHHHHHHHHHHHHHTCCCS----CEEEESSCHHHHHHHHHHHHCCT----
T ss_pred CCCCCHHHHHHHhccccc---cc--CHHHHHHHHHHHHHHHHHhCCCCC----cEEEEeCchHHHHHHHHHhccCC----
Confidence 335567787777655542 12 234667888999999999999641 15899999999999888887321
Q ss_pred HHhcCCCCCCCeEEeCCCcchH--HHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhh-CCeEEEEeeCCCCcccccCH
Q 011057 145 RKAEGKPFDKPNIVTGANVQVC--WEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDE-NTICVAAILGSTLNGEFEDV 221 (494)
Q Consensus 145 ~~~~g~~~~~~~vi~~~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~t~~vv~~~~~~~tG~~~~l 221 (494)
+++|+++.++|.+ +..+++..|++++.++++++ +.+|+++|++++++ ++++|++++++|+||.+.|+
T Consensus 109 ---------gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l 178 (393)
T 1vjo_A 109 ---------GDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWG-EVFSLEELRTALETHRPAILALVHAETSTGARQPL 178 (393)
T ss_dssp ---------TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCC
T ss_pred ---------CCEEEEEcCChhHHHHHHHHHHcCCceEEEecCCC-CCCCHHHHHHHHhhCCceEEEEeccCCCcceeccH
Confidence 2589999999998 88899999999999999874 78999999999998 89999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccc
Q 011057 222 KLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELI 301 (494)
Q Consensus 222 ~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~ 301 (494)
++|.++|+++ |+++++|++|+.+..++ ++...++|+++.++||++++|.|+|+++++++ .+ +.+.
T Consensus 179 ~~i~~l~~~~------~~~li~Dea~~~g~~~~-------~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~-~~-~~~~ 243 (393)
T 1vjo_A 179 EGVGELCREF------GTLLLVDTVTSLGGVPI-------FLDAWGVDLAYSCSQKGLGCSPGASPFTMSSR-AI-EKLQ 243 (393)
T ss_dssp TTHHHHHHHH------TCEEEEECTTTTTTSCC-------CTTTTTCSEEECCSSSTTCSCSSCEEEEECHH-HH-HHHH
T ss_pred HHHHHHHHHc------CCEEEEECCccccCcCC-------cccccCccEEEEcCcccccCCCceEEEEECHH-HH-HHHh
Confidence 9999999999 99999999998543221 22234689999999999988889999998653 21 1111
Q ss_pred cc----cCCCCCC------CCCccccc-CcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecC
Q 011057 302 FH----INYLGAD------QPTFTLNF-SKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKD 370 (494)
Q Consensus 302 ~~----~~y~~~~------~~~~~~~~-s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~ 370 (494)
.. ..+..+. .......+ +.+.....++.++++.+..+++++..++..++++++.+.|+++ ++++..+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 322 (393)
T 1vjo_A 244 RRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI-GLSLHVEK 322 (393)
T ss_dssp TCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCG
T ss_pred ccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc-CCcccCCc
Confidence 00 0111000 00001112 4555566677777877666678889999999999999999998 58776543
Q ss_pred C--CccEEEEEecCCCCCCHHHHHHHHHhc-CceeeccccCCCCCCceEEEEEec-cCCChHHHHHHHHHHHHHH
Q 011057 371 E--GVPLVAFSLKDNKRHDEFEVAELLRRF-GWIVPAYTMPADAQHITVLRVVIR-EDFSRTLAERLVLDITKVL 441 (494)
Q Consensus 371 ~--~~~~v~f~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRvs~~-~~~t~~~id~~i~~l~~~~ 441 (494)
. ..+++.|.++ .+.+..++.++|.++ |+.+.....+ ....++|+++. ...++++++++++.|++++
T Consensus 323 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~gi~v~~g~~~---~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 323 EYRLPTLTTVCIP--DGVDGKAVARRLLNEHNIEVGGGLGE---LAGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp GGBCSSEEEEECC--TTCCHHHHHHHHHHHHCEECEECCGG---GTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred cccCCcEEEEEcC--CCCCHHHHHHHHHhhCCEEEecCccc---cCCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 1 2357778773 245788999999988 9987543322 13457999954 3445667998888888765
No 35
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.97 E-value=3.6e-29 Score=252.60 Aligned_cols=342 Identities=16% Similarity=0.100 Sum_probs=227.7
Q ss_pred CCChHHHHHHHHHHhcccCCCCC----CChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHH
Q 011057 66 TWMEPECDKLMMAAINKNYVDMD----EYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKW 141 (494)
Q Consensus 66 ~~~~p~~~~~~~~~~~~~~~~~~----~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~ 141 (494)
.+++|.+.+++.+.+.....+.. ......++.+++++++++++|.++ ..+++|+|+++|+.+++.++....
T Consensus 30 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-----~~v~~~~g~t~al~~~~~~l~~~~ 104 (400)
T 3vax_A 30 TRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEP-----DELIFTSGATESNNIALLGLAPYG 104 (400)
T ss_dssp SSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCG-----GGEEEESCHHHHHHHHHHTTHHHH
T ss_pred CCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCC-----CcEEEeCCHHHHHHHHHHHHHHhh
Confidence 35567888888887764322211 122445677889999999999974 358999999999999988875221
Q ss_pred HHHHHhcCCCCCCC-eEEeCCCcchHHHHHHHH---cCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCccc
Q 011057 142 QNKRKAEGKPFDKP-NIVTGANVQVCWEKFARY---FEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGE 217 (494)
Q Consensus 142 ~~~~~~~g~~~~~~-~vi~~~~~h~s~~~~~~~---~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~ 217 (494)
.. . ++ +|+++..+|+++...+.. .|++++.++++++ +.+|+++|++++++++++|++++++|+||.
T Consensus 105 ~~----~-----gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~nptG~ 174 (400)
T 3vax_A 105 ER----T-----GRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPS-GRISVEGVMERLRPDTLLVSLMHVNNETGV 174 (400)
T ss_dssp HH----H-----TCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTT-CCCCHHHHHTTCCTTEEEEECCSBCTTTCB
T ss_pred cc----C-----CCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCCC-CCcCHHHHHHhcCCCceEEEEECCCCCcee
Confidence 11 1 25 899999999987766554 5999999999874 789999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEE-EeCCCCc
Q 011057 218 FEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVI-WRNKEDL 296 (494)
Q Consensus 218 ~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~-~~~~~~~ 296 (494)
+.|+++|.++|+++ |+++++|++|+.+..+. ++... +|+++.++||+ ++|.|+|+++ ++++...
T Consensus 175 ~~~l~~i~~la~~~------~~~li~D~a~~~~~~~~-------~~~~~-~d~~~~s~~K~-~g~~g~g~~~~~~~~~~~ 239 (400)
T 3vax_A 175 IQPVAELAQQLRAT------PTYLHVDAAQGYGKVPG-------DLTTP-IDMISISGHKI-GAPKGVGALVTRRREEMD 239 (400)
T ss_dssp BCCHHHHHHHHTTS------SCEEEEECTTTTTTSGG-------GGGSC-CSEEEEETGGG-TSCSSCEEEEECBCSSST
T ss_pred eCcHHHHHHHHHhc------CCEEEEEhhhhcCCCCc-------Chhhc-CcEEEEeHHHh-CCCCceEEEEEecchhcc
Confidence 99999999999999 99999999998654322 23223 89999999995 5678999999 8774322
Q ss_pred ccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCC--Ccc
Q 011057 297 PEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDE--GVP 374 (494)
Q Consensus 297 ~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~--~~~ 374 (494)
.........+.+.........++.+.....++.++++.+. ++++++.++..++++++.+.|+ .+++++..++. ..+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~ 317 (400)
T 3vax_A 240 DERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFE-AEHAQWQVAAQDLRSRLLAGLA-STSFQVNGDQDHVVPH 317 (400)
T ss_dssp TCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH-HSHHHHHHHHHHHHHHHHHHHT-TTTCEECSCTTSBCTT
T ss_pred ccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhhC-CCCEEEeCCcccCCCC
Confidence 0000011111111111111123444455555666666543 4678889999999999999999 77898876542 235
Q ss_pred EEEEEecCCCCCCHHHHHHHHHhcCceeeccccCC-------------CCC---CceEEEEEe-ccCCChHHHHHHHHHH
Q 011057 375 LVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPA-------------DAQ---HITVLRVVI-REDFSRTLAERLVLDI 437 (494)
Q Consensus 375 ~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~-------------~~~---~~~~lRvs~-~~~~t~~~id~~i~~l 437 (494)
++.|.+.+ .+..++.+.|. +|+.++...... ... ...++|+++ +...+.++++++++.|
T Consensus 318 ~~~~~~~~---~~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l 393 (400)
T 3vax_A 318 ILNLSFED---VDAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGV 393 (400)
T ss_dssp EEEEECTT---CCHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC--------------
T ss_pred EEEEEeCC---CCHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHH
Confidence 88887743 57889999999 998764321000 000 136899999 8888999999999998
Q ss_pred HHHHHH
Q 011057 438 TKVLHE 443 (494)
Q Consensus 438 ~~~~~~ 443 (494)
+++++.
T Consensus 394 ~~~~~~ 399 (400)
T 3vax_A 394 AKLKPS 399 (400)
T ss_dssp ------
T ss_pred HHHhcc
Confidence 887653
No 36
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.97 E-value=1e-28 Score=248.98 Aligned_cols=335 Identities=14% Similarity=0.101 Sum_probs=242.4
Q ss_pred CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHH
Q 011057 67 WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRK 146 (494)
Q Consensus 67 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~ 146 (494)
+.++.+.+++.+.+.. .+ ++.......++++++++++|.+++ ..+++|+||++|+.+++.++..
T Consensus 28 ~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~l~~~la~~~~~~~~----~~v~~~~g~t~al~~~~~~~~~------- 91 (396)
T 2ch1_A 28 NCSKRVLTAMTNTVLS---NF--HAELFRTMDEVKDGLRYIFQTENR----ATMCVSGSAHAGMEAMLSNLLE------- 91 (396)
T ss_dssp CCCHHHHHHTTSCCCC---TT--CHHHHHHHHHHHHHHHHHHTCCCS----CEEEESSCHHHHHHHHHHHHCC-------
T ss_pred CCCHHHHHHhcccccc---CC--ChhHHHHHHHHHHHHHHHhCCCCC----cEEEECCcHHHHHHHHHHHhcC-------
Confidence 3456676666544321 12 344445667899999999999751 1588999999999988887732
Q ss_pred hcCCCCCCCeEEeCCCcchHHH--HHHHHcCCeeEEEeccCCccccCHHHHHHhhhh-CCeEEEEeeCCCCcccccCHHH
Q 011057 147 AEGKPFDKPNIVTGANVQVCWE--KFARYFEVELKEVKLSEGYYVMDPVKAVEMVDE-NTICVAAILGSTLNGEFEDVKL 223 (494)
Q Consensus 147 ~~g~~~~~~~vi~~~~~h~s~~--~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~t~~vv~~~~~~~tG~~~~l~~ 223 (494)
.+++|+++.++|.++. ..++..|++++.++++++ +.+|+++|++++++ ++++|++++++|+||.+.|+++
T Consensus 92 ------~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~ 164 (396)
T 2ch1_A 92 ------EGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPD-RPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEG 164 (396)
T ss_dssp ------TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT-SCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTT
T ss_pred ------CCCeEEEEcCCcccHHHHHHHHHcCCceEEecCCCC-CCCCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHH
Confidence 1258999999998874 477889999999999764 78999999999988 8999999999999999999999
Q ss_pred HHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccccc
Q 011057 224 LNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFH 303 (494)
Q Consensus 224 I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~ 303 (494)
|.++|+++ ++++++|++|+.+..++ ++...++|+++.++||++++|.|+|++++++. .+ ..+...
T Consensus 165 i~~l~~~~------~~~li~Dea~~~g~~~~-------~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~-~~-~~~~~~ 229 (396)
T 2ch1_A 165 VGQICHQH------DCLLIVDAVASLCGVPF-------YMDKWEIDAVYTGAQKVLGAPPGITPISISPK-AL-DVIRNR 229 (396)
T ss_dssp HHHHHHHT------TCEEEEECTTTBTTBCC-------CTTTTTCCEEECCCC-CCCCCSSCEEEEECHH-HH-HHHHTC
T ss_pred HHHHHHHc------CCEEEEEccccccCCcc-------chhhcCcCEEEEcCCccccCCCCeEEEEECHH-HH-Hhhhhc
Confidence 99999999 99999999998543321 22223579999999999999999999888652 22 111100
Q ss_pred ----cC-C---------CCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeec
Q 011057 304 ----IN-Y---------LGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSK 369 (494)
Q Consensus 304 ----~~-y---------~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~ 369 (494)
.. + ...........++.+.....++.++++.+..++++++.++..++++++.+.|+++ +++++.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 308 (396)
T 2ch1_A 230 RTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM-GLDIFVK 308 (396)
T ss_dssp SSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSC
T ss_pred cCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCeeccC
Confidence 00 0 1100000011244445555667777777666778889999999999999999998 4877654
Q ss_pred CC---CccEEEEEecCCCCCCHHHHHHHHHhc-CceeeccccCCCCCCceEEEEEec-cCCChHHHHHHHHHHHHHHHHH
Q 011057 370 DE---GVPLVAFSLKDNKRHDEFEVAELLRRF-GWIVPAYTMPADAQHITVLRVVIR-EDFSRTLAERLVLDITKVLHEL 444 (494)
Q Consensus 370 ~~---~~~~v~f~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRvs~~-~~~t~~~id~~i~~l~~~~~~l 444 (494)
.. ...++.|.++ .+.+..++.++|.++ ||.+.....+ ....++|++++ ...++++++++++.|+++++++
T Consensus 309 ~~~~~~~~~~~~~~~--~~~~~~~~~~~L~~~~gi~v~~g~~~---~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~ 383 (396)
T 2ch1_A 309 DPRHRLPTVTGIMIP--KGVDWWKVSQYAMNNFSLEVQGGLGP---TFGKAWRVGIMGECSTVQKIQFYLYGFKESLKAT 383 (396)
T ss_dssp SGGGBCTTEEEEECC--TTCCHHHHHHHHHHHHCBCCBCCCGG---GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCceEEEEcC--CCCCHHHHHHHHHHhCCEEEecCccc---cCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHh
Confidence 31 1237788874 245788999999875 9987543211 23457999994 4568899999999999998876
Q ss_pred h
Q 011057 445 D 445 (494)
Q Consensus 445 ~ 445 (494)
.
T Consensus 384 ~ 384 (396)
T 2ch1_A 384 H 384 (396)
T ss_dssp C
T ss_pred C
Confidence 4
No 37
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.97 E-value=6.6e-29 Score=246.95 Aligned_cols=330 Identities=15% Similarity=0.082 Sum_probs=243.4
Q ss_pred ChHHHHHHHHHHhcccCC-CCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHH
Q 011057 68 MEPECDKLMMAAINKNYV-DMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRK 146 (494)
Q Consensus 68 ~~p~~~~~~~~~~~~~~~-~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~ 146 (494)
.++.+.+++.+++..... ....++.+.++.+++++++++++|.+. ...+++|+|+++|+.+++.++..
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~----~~~v~~~~g~t~al~~~~~~l~~------- 83 (362)
T 3ffr_A 15 LYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPS----NYEVLFLASATEIWERIIQNCVE------- 83 (362)
T ss_dssp CCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCT----TEEEEEESCHHHHHHHHHHHHCS-------
T ss_pred CCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCC----CcEEEEeCCchHHHHHHHHhccC-------
Confidence 356677777777655432 223567778888999999999999863 14588999999999988887732
Q ss_pred hcCCCCCCCeEEeCCCcchH--HHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHH
Q 011057 147 AEGKPFDKPNIVTGANVQVC--WEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLL 224 (494)
Q Consensus 147 ~~g~~~~~~~vi~~~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I 224 (494)
+++++....|++ +...++..|++++.++.+++ +.+|+++|+ ++++|++|++++++|+||.+.|+++|
T Consensus 84 --------~~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~--~~~~~~~v~~~~~~nptG~~~~l~~i 152 (362)
T 3ffr_A 84 --------KKSFHCVNGSFSKRFYEFAGELGREAYKEEAAFG-KGFYPADIT--VPADAEIICLTHNETSSGVSMPVEDI 152 (362)
T ss_dssp --------SEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCGGGCC--CCTTCCEEEEESEETTTTEECCHHHH
T ss_pred --------CcEEEEcCcHHHHHHHHHHHHhCCCeEEEecCCC-CCCCHHHHh--ccCCccEEEEEcCCCCcceeCCHHHH
Confidence 255555555544 44567788999999998764 689999998 77889999999999999999999999
Q ss_pred HHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCccccccccc
Q 011057 225 NDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHI 304 (494)
Q Consensus 225 ~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~ 304 (494)
.++|+++| |+++++|++|+.+..+. ++ ..+|++++++|||+++|.|+|+++++++ .+........
T Consensus 153 ~~la~~~p-----~~~li~D~a~~~~~~~~-------~~--~~~d~~~~s~~K~~~~~~G~g~~~~~~~-~~~~~~~~~~ 217 (362)
T 3ffr_A 153 NTFRDKNK-----DALIFVDAVSSLPYPKF-------DW--TKIDSVFFSVQKCFGLPAGLGVWILNDR-VIEKSKALLA 217 (362)
T ss_dssp TTSGGGST-----TSEEEEECTTTTTSSCC-------CT--TSCSEEEEETTSTTCCCSCCEEEEEEHH-HHHHHHHHHH
T ss_pred HHHHHhCC-----CCEEEEecccccCCccc-------Ch--hHCcEEEEecccccCCCCceEEEEECHH-HHHHhhhccc
Confidence 99999985 89999999998764322 11 2389999999999988899999887653 2211111110
Q ss_pred -----CCCCC-C-----CCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCC--
Q 011057 305 -----NYLGA-D-----QPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDE-- 371 (494)
Q Consensus 305 -----~y~~~-~-----~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~-- 371 (494)
.+... . .......++.+.....++.++++.+..++++++.++..++++++.+.|++++++++..+..
T Consensus 218 gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~ 297 (362)
T 3ffr_A 218 KRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKL 297 (362)
T ss_dssp TTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGG
T ss_pred cCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhh
Confidence 00000 0 0001112455556667777888877777788999999999999999999997799876321
Q ss_pred -CccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHH
Q 011057 372 -GVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVL 441 (494)
Q Consensus 372 -~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~ 441 (494)
...+++|.++. +..++.++|.++|+.+.....+ .+..++|++++..++.++++++++.|++++
T Consensus 298 ~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~g~~~---~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 298 RSMTTIVANTTM----LPGEINKILEPFDMAVGAGYGS---KKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp BCSSEEEEEESS----CHHHHHHHHGGGTEEEEECSGG---GTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred cCCceEEEecCC----CHHHHHHHHHHCCeEEecCccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 35677788743 6889999999999988643222 234679999999999999999998888763
No 38
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.97 E-value=7.3e-29 Score=248.24 Aligned_cols=332 Identities=12% Similarity=0.079 Sum_probs=238.8
Q ss_pred CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHH
Q 011057 67 WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRK 146 (494)
Q Consensus 67 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~ 146 (494)
+.+|.+.+++.+.+.. ..++...++.+++++++++++|.+.+ ...+++|+||++|+.+++.++..+
T Consensus 29 ~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~~~~~la~~~g~~~~---~~~i~~~~ggt~al~~~~~~~~~~------ 94 (376)
T 3f0h_A 29 MSSEEVRAIGAEQVPY-----FRTTEFSSTMLENEKFMLEYAKAPEG---SKAVFMTCSSTGSMEAVVMNCFTK------ 94 (376)
T ss_dssp CCCHHHHHHHTSCCCC-----CSSHHHHHHHHHHHHHHHHHHTCCTT---CEEEEESSCHHHHHHHHHHHHCCT------
T ss_pred CCcHHHHHHhcCCCCC-----CCCHHHHHHHHHHHHHHHHHhCCCCC---ceEEEEcCChhHHHHHHHHhccCC------
Confidence 3457777766544321 23566778888999999999999742 123445889999999888777321
Q ss_pred hcCCCCCCCeEEeCCCcchHH--HHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHH
Q 011057 147 AEGKPFDKPNIVTGANVQVCW--EKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLL 224 (494)
Q Consensus 147 ~~g~~~~~~~vi~~~~~h~s~--~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I 224 (494)
+++|+++.+.++.. ...+...|++++.++++.+ +.+|+++|++++++++++|++++++|+||.+.|+++|
T Consensus 95 -------gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i 166 (376)
T 3f0h_A 95 -------KDKVLVIDGGSFGHRFVQLCEIHEIPYVALKLEHG-KKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYDTMMI 166 (376)
T ss_dssp -------TCCEEEEESSHHHHHHHHHHHHTTCCEEEEECCTT-CCCCHHHHHTTTTSCCCEEEEESEETTTTEECCHHHH
T ss_pred -------CCeEEEEeCChhhHHHHHHHHHcCCceEEEeCCCC-CCCCHHHHHHhhccCceEEEEecccCCcceecCHHHH
Confidence 25788777655442 3457778999999998864 7899999999998899999999999999999999999
Q ss_pred HHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCccccccc--
Q 011057 225 NDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIF-- 302 (494)
Q Consensus 225 ~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~-- 302 (494)
.++|+++ |+++++|++++.+..++ ++...++|++++++||+++++.|+|+++++++ .+ ..+..
T Consensus 167 ~~l~~~~------~~~li~D~~~~~~~~~~-------~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~-~~-~~~~~~~ 231 (376)
T 3f0h_A 167 GEFCKKN------NMFFVCDCVSAFLADPF-------NMNECGADVMITGSQKVLACPPGISVIVLAPR-GV-ERVEKSK 231 (376)
T ss_dssp HHHHHHT------TCEEEEECTTTTTTSCC-------CHHHHTCSEEEEETTTTTCCCSSCEEEEECHH-HH-HHHHTCC
T ss_pred HHHHHHc------CCEEEEEcCccccCccc-------cccccCccEEEecCcccccCCCceEEEEECHH-HH-HHhhcCC
Confidence 9999999 99999999998764322 12112589999999999987889999877553 21 11111
Q ss_pred ccCC-CCCC-----CCCcccccCcchHHHHHHHHHHHHhcHh-HHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccE
Q 011057 303 HINY-LGAD-----QPTFTLNFSKGSSQVIAQYYQLIRLGFE-GYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPL 375 (494)
Q Consensus 303 ~~~y-~~~~-----~~~~~~~~s~~~~~~~a~~~al~~l~~~-g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~ 375 (494)
...+ .... ........+.+...++++.++++.+..+ +++++.++..++++++.+.|++++ +++..+.....+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~ 310 (376)
T 3f0h_A 232 VRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLP-FELVSESPANGV 310 (376)
T ss_dssp CCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSS-EEECCSSBBTTE
T ss_pred CCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC-CccCccccCceE
Confidence 0111 1000 0000011233334446677788877777 788999999999999999999986 887654323345
Q ss_pred EEEEecCCCCCCHHHHHHHHHhc-CceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHH
Q 011057 376 VAFSLKDNKRHDEFEVAELLRRF-GWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLH 442 (494)
Q Consensus 376 v~f~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~ 442 (494)
+.+.. .+.+..++.++|.++ |+.++....+ .+..++|++++..+|+++++++++.|+++++
T Consensus 311 ~~~~~---~~~~~~~l~~~l~~~~gi~v~~g~~~---~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~ 372 (376)
T 3f0h_A 311 TSVHP---TTANAYDIFLKLKDEYGIWICPNGGE---MKDTIFRVGHIGALTHEDNTTLVNAFKDLQK 372 (376)
T ss_dssp EEEEE---SSSCHHHHHHHHHHHSSEECEECCGG---GTTTCEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred EEEeC---CCCCHHHHHHHHHHhCCEEEecCccc---cCCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 55553 245788999999998 9987543211 2345799999988999999999999988875
No 39
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.97 E-value=2.5e-28 Score=242.99 Aligned_cols=333 Identities=14% Similarity=0.066 Sum_probs=236.3
Q ss_pred CChHHHHHHHHHHhcccCCCCCCChhhH-HHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHH
Q 011057 67 WMEPECDKLMMAAINKNYVDMDEYPVTT-ELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKR 145 (494)
Q Consensus 67 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~ 145 (494)
..+|.+.+++.+.+ .+ .++... ....++++++++++|.+. +...+++|+||++|+.+++.++..+
T Consensus 14 ~~~~~v~~a~~~~~----~~--~~~~~~~~~~~~l~~~la~~~g~~~---~~~~v~~~~g~t~a~~~~~~~~~~~----- 79 (366)
T 1m32_A 14 TTSRTVKEAMLFDS----CT--WDDDYNIGVVEQIRQQLTALATASE---GYTSVLLQGSGSYAVEAVLGSALGP----- 79 (366)
T ss_dssp CCCHHHHHTTCCCC----CT--TSHHHHTTTHHHHHHHHHHHHCSSS---SEEEEEEESCHHHHHHHHHHHSCCT-----
T ss_pred CCCHHHHHHHhhhh----cC--CCHHHHHHHHHHHHHHHHHHhCCCC---cCcEEEEecChHHHHHHHHHHhcCC-----
Confidence 45677777665432 11 223222 455678888999999431 1125899999999999888877321
Q ss_pred HhcCCCCCCCeEE-eCCCcchH-HHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhh--CCeEEEEeeCCCCcccccCH
Q 011057 146 KAEGKPFDKPNIV-TGANVQVC-WEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDE--NTICVAAILGSTLNGEFEDV 221 (494)
Q Consensus 146 ~~~g~~~~~~~vi-~~~~~h~s-~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~--~t~~vv~~~~~~~tG~~~~l 221 (494)
+++|+ .+..+|.+ +..++...|++++.++++++ +.+|+++|++++++ ++++|++++++||||.+.|+
T Consensus 80 --------gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l 150 (366)
T 1m32_A 80 --------QDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEV-ARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPI 150 (366)
T ss_dssp --------TCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTT-SCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCH
T ss_pred --------CCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCCC-CCCCHHHHHHHHhcCCCeEEEEEecccCCcceecCH
Confidence 24555 45578875 66778889999999998764 68999999999987 47889999999999999999
Q ss_pred HHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccc
Q 011057 222 KLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELI 301 (494)
Q Consensus 222 ~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~ 301 (494)
++|.++|+++ |+++++|++|+.+..++ ++...++|+++.++||++++|.|+|++++++. .+ +.+.
T Consensus 151 ~~i~~l~~~~------~~~li~Dea~~~~~~~~-------~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~-~~-~~~~ 215 (366)
T 1m32_A 151 DEVGALAHRY------GKTYIVDAMSSFGGIPM-------DIAALHIDYLISSANKCIQGVPGFAFVIAREQ-KL-AACK 215 (366)
T ss_dssp HHHHHHHHHH------TCEEEEECTTTTTTSCC-------CTTTTTCSEEEEESSSTTCCCSSEEEEEEEHH-HH-TTCT
T ss_pred HHHHHHHHHc------CCEEEEECCccccCcCc-------cccccCccEEEecCcccccCCCceEEEEECHH-HH-Hhhc
Confidence 9999999999 99999999998654322 22223589999999999988899999998763 11 1111
Q ss_pred cc-cCCCCCC--------CCCcccccCcchHHHHHHHHHHHHhcHhH-HHHHHHHHHHHHHHHHHHHhhCCCeEEeecC-
Q 011057 302 FH-INYLGAD--------QPTFTLNFSKGSSQVIAQYYQLIRLGFEG-YRNVMENCHENAMVLKEGLEKTGRFNIVSKD- 370 (494)
Q Consensus 302 ~~-~~y~~~~--------~~~~~~~~s~~~~~~~a~~~al~~l~~~g-~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~- 370 (494)
.. ..|.... .......++.+.....++.++++.+...| ++++.++..++++++.+.|+++ ++++..++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~ 294 (366)
T 1m32_A 216 GHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLDDE 294 (366)
T ss_dssp TCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGG
T ss_pred CCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC-CCeeccCch
Confidence 10 0111000 00000013444455666777787776666 7888999999999999999998 47766442
Q ss_pred CCcc-EEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHH
Q 011057 371 EGVP-LVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLH 442 (494)
Q Consensus 371 ~~~~-~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~ 442 (494)
...+ ++.+.++...+.+..++.++|.++|+.+..... .+..++|++++..+++++++++++.|+++++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~----~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 363 (366)
T 1m32_A 295 LHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKV----SQSDCFRIGNIGEVYAADITALLTAIRTAMY 363 (366)
T ss_dssp GBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCC----SSSCEEEEECCSSCCHHHHHHHHHHHHHHCT
T ss_pred hcCceEEEEEcCccCCCCHHHHHHHHHHCCEEEECCcC----CCCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 1234 777887421145788999999999998754322 1456799999988899999999988887754
No 40
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.97 E-value=2.2e-28 Score=249.23 Aligned_cols=340 Identities=13% Similarity=0.029 Sum_probs=244.7
Q ss_pred ccccccc-C-CChHHHHHHHHHHhcccCCCCCC---ChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHH
Q 011057 59 NLASFVT-T-WMEPECDKLMMAAINKNYVDMDE---YPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLA 133 (494)
Q Consensus 59 ~~~~~~~-~-~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a 133 (494)
+|.++.+ . +++|.+.+++.+++......+.. ..+......++++++++++|.+. .+++++|++|+..+
T Consensus 68 d~~~~~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g~~~-------~i~~~sGs~a~~~a 140 (427)
T 2w8t_A 68 LLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYGTTG-------AIVFSTGYMANLGI 140 (427)
T ss_dssp ECSCCCTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHTCSE-------EEEESCHHHHHHHH
T ss_pred EEECcccccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhCCCc-------eEEecCcHHHHHHH
Confidence 4455432 2 35678888888887653222222 12344667778889999999863 67888889999887
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhh----CCeEEEEe
Q 011057 134 GLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDE----NTICVAAI 209 (494)
Q Consensus 134 ~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~----~t~~vv~~ 209 (494)
+.++.. .++.|+++.+.|.++...++..|++++.++ .+|+++|++++.+ ++++|+++
T Consensus 141 l~~l~~-------------~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~------~~d~~~le~~l~~~~~~~~~~v~~~ 201 (427)
T 2w8t_A 141 ISTLAG-------------KGEYVILDADSHASIYDGCQQGNAEIVRFR------HNSVEDLDKRLGRLPKEPAKLVVLE 201 (427)
T ss_dssp HHHHSC-------------TTCEEEEETTCCHHHHHHHHHSCSEEEEEC------TTCHHHHHHHHHTSCSSSCEEEEEE
T ss_pred HHHhcC-------------CCCEEEECCcccHHHHHHHHHcCCeeEEeC------CCCHHHHHHHHHhccCCCCeEEEEc
Confidence 776522 125899999999999999999999988876 3689999999987 78899999
Q ss_pred eCCCCcccccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCccccccc-CCCceEEEEcCcccCCcCCceEEE
Q 011057 210 LGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFR-LPLVKSINVSGHKYGLVYAGIGWV 288 (494)
Q Consensus 210 ~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~D~~~~~~hK~l~~p~g~G~~ 288 (494)
.++|++|.+.|+++|.++|+++ |+++++|++|+.+..+.........++ .+++|++..+++|+++ +.| |++
T Consensus 202 ~~~n~tG~~~~l~~l~~l~~~~------g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g-~~g-G~v 273 (427)
T 2w8t_A 202 GVYSMLGDIAPLKEMVAVAKKH------GAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVG-TVG-GFV 273 (427)
T ss_dssp SEETTTTEECCHHHHHHHHHHT------TCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTC-SCC-EEE
T ss_pred CCCCCCCCccCHHHHHHHHHHc------CCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhc-cCC-CEE
Confidence 9999999999999999999999 999999999998754210011110122 2368999999999986 555 887
Q ss_pred EEeCCCCcccccccc-cCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEe
Q 011057 289 IWRNKEDLPEELIFH-INYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIV 367 (494)
Q Consensus 289 ~~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 367 (494)
+.++ ..+ +.+... ..|. +.++.+.....++.++++.+.. ++++.++..++++++.+.|++++ +++.
T Consensus 274 ~~~~-~l~-~~l~~~~~~~~--------~~~~~~~~~~aa~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~g-~~~~ 340 (427)
T 2w8t_A 274 VSNH-PKF-EAVRLACRPYI--------FTASLPPSVVATATTSIRKLMT--AHEKRERLWSNARALHGGLKAMG-FRLG 340 (427)
T ss_dssp EECC-TTG-GGGGGTCHHHH--------SSCCCCHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHHHHHHHHHT-CEES
T ss_pred EeCH-HHH-HHHHHhccccc--------ccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcC-Cccc
Confidence 7654 333 222111 1111 1133444555555566766542 46778889999999999999984 8876
Q ss_pred ecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHHhcC
Q 011057 368 SKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDSL 447 (494)
Q Consensus 368 ~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~~~ 447 (494)
.++...+++.+.+.. ..+..++.++|.++|+.+.....|....+..++|++++..++.++++++++.|+++++++.+.
T Consensus 341 ~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 418 (427)
T 2w8t_A 341 TETCDSAIVAVMLED--QEQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAVGVI 418 (427)
T ss_dssp CSSCCSSEEEEEESS--HHHHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCEEEEEECC--HHHHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence 333145788888743 234678999999999998766555444456789999998899999999999999998876653
No 41
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.97 E-value=3.9e-28 Score=244.16 Aligned_cols=350 Identities=13% Similarity=0.040 Sum_probs=248.0
Q ss_pred CCCCCcccccccC-CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHH
Q 011057 54 GNPRLNLASFVTT-WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIML 132 (494)
Q Consensus 54 ~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~ 132 (494)
++..++|..+.+. +++|.+.+++.+++......|... ..++++++++++++.+|.+.+ ...+++|+|+++|+.+
T Consensus 26 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~---~~~i~~~~g~~~a~~~ 100 (391)
T 3dzz_A 26 KEKELPMWIAEMDFKIAPEIMASMEEKLKVAAFGYESV--PAEYYKAVADWEEIEHRARPK---EDWCVFASGVVPAISA 100 (391)
T ss_dssp CTTCEECCSSCCSSCCCHHHHHHHHHHHTTCCCCCBCC--CHHHHHHHHHHHHHHHSCCCC---GGGEEEESCHHHHHHH
T ss_pred CCCceeccccCCCCCCCHHHHHHHHHHHhcCcCCCCCC--CHHHHHHHHHHHHHHhCCCCC---HHHEEECCCHHHHHHH
Confidence 4455555554443 346789999998887654444333 578899999999999995432 2468999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEecc--CCccccCHHHHHHhhh-hCCeEEEEe
Q 011057 133 AGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLS--EGYYVMDPVKAVEMVD-ENTICVAAI 209 (494)
Q Consensus 133 a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~--~~~~~~d~~~L~~~i~-~~t~~vv~~ 209 (494)
++.++..+ +++|+++.++|.++...++..|++++.++++ ++++.+|+++|+++++ +++++|+++
T Consensus 101 ~~~~l~~~-------------gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~ 167 (391)
T 3dzz_A 101 MVRQFTSP-------------GDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFC 167 (391)
T ss_dssp HHHHHSCT-------------TCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEE
T ss_pred HHHHhCCC-------------CCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEE
Confidence 88877321 2689999999999999999999999999985 4446699999999998 688999999
Q ss_pred eCCCCcccc---cCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCccc--ccccCCCce--EEEEcCcccCC-c
Q 011057 210 LGSTLNGEF---EDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELE--WDFRLPLVK--SINVSGHKYGL-V 281 (494)
Q Consensus 210 ~~~~~tG~~---~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~~~~~~D--~~~~~~hK~l~-~ 281 (494)
+++||||.+ +++++|+++|+++ |+++|+|++|+.+.. ...... ..+.....| ++..++||++. +
T Consensus 168 ~p~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~ 239 (391)
T 3dzz_A 168 NPHNPIGYAWSEEEVKRIAELCAKH------QVLLISDEIHGDLVL--TDEDITPAFTVDWDAKNWVVSLISPSKTFNLA 239 (391)
T ss_dssp SSBTTTTBCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBC--SSCCCCCGGGSCTTTGGGEEEEECSHHHHTCT
T ss_pred CCCCCCCcccCHHHHHHHHHHHHHC------CCEEEEecccccccC--CCCCceehhhcCccccCcEEEEEeChhhcccc
Confidence 999999999 7899999999999 999999999987542 111110 011111245 88899999984 6
Q ss_pred CCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhh-
Q 011057 282 YAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK- 360 (494)
Q Consensus 282 p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~- 360 (494)
+.++|+++++++... ..+........ .++.+.....++.+++.. +.+.+++..++..++++++.+.|++
T Consensus 240 G~r~G~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~ 309 (391)
T 3dzz_A 240 ALHAACAIIPNPDLR-ARAEESFFLAG--------IGEPNLLAIPAAIAAYEE-GHDWLRELKQVLRDNFAYAREFLAKE 309 (391)
T ss_dssp TTCCEEEECCSHHHH-HHHHHHHHHHT--------CSSCCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhheEEEECCHHHH-HHHHHHHHhhc--------cCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 678899987644332 21111100000 012222334444555544 4555788888999999999999999
Q ss_pred CCCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHH-hcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHH
Q 011057 361 TGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLR-RFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITK 439 (494)
Q Consensus 361 ~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~-~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~ 439 (494)
++++++..+. ...++.+.+.. .+.+..++.++|. ++|+.+....... ..+..++|++++ ++.++++++++.|++
T Consensus 310 ~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g~~~~-~~~~~~iRis~~--~~~~~i~~~l~~l~~ 384 (391)
T 3dzz_A 310 VPEVKVLDSN-ASYLAWVDISA-LGMNAEDFCKYLREKTGLIISAGNGYR-GNGHEFVRINLA--CPKELVIDGMQRLKQ 384 (391)
T ss_dssp CTTSEECCCC-BSSEEEEECGG-GCSCHHHHHHHHHHHHCEECEESGGGC-TTGGGEEEEECC--SCHHHHHHHHHHHHH
T ss_pred CCCcEEeccC-ceEEEEEehhh-cCCCHHHHHHHHHHhCCEEEeCchhhC-CCCCCEEEEEec--CCHHHHHHHHHHHHH
Confidence 7778876553 22334456542 2357889999995 8999886433221 134578999988 588899988888888
Q ss_pred HHHHH
Q 011057 440 VLHEL 444 (494)
Q Consensus 440 ~~~~l 444 (494)
+++++
T Consensus 385 ~l~~~ 389 (391)
T 3dzz_A 385 GVLNL 389 (391)
T ss_dssp HHHTC
T ss_pred HHHHh
Confidence 77654
No 42
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.97 E-value=3.2e-29 Score=248.46 Aligned_cols=336 Identities=12% Similarity=0.005 Sum_probs=241.5
Q ss_pred cCCChHHHHHHHHHHhccc---CCC----CCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceee-ecChhHHHHHHHHH
Q 011057 65 TTWMEPECDKLMMAAINKN---YVD----MDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVG-TVGSSEAIMLAGLA 136 (494)
Q Consensus 65 ~~~~~p~~~~~~~~~~~~~---~~~----~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~-t~ggt~a~~~a~~a 136 (494)
+.+.++.+.+++...+.+. +.+ ...++.+.++.+++++.+++++|.+++ ..++| |.|||+++.+++..
T Consensus 21 ~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~----~evif~t~~~T~a~n~a~~~ 96 (377)
T 3e77_A 21 QSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDN----YKVIFLQGGGCGQFSAVPLN 96 (377)
T ss_dssp SCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTT----EEEEEESSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC----CeEEEEcCchHHHHHHHHHh
Confidence 4456788999998877542 211 123456778888999999999999742 34778 57899999988876
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEeCCCcchH--HHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCC
Q 011057 137 FKRKWQNKRKAEGKPFDKPNIVTGANVQVC--WEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTL 214 (494)
Q Consensus 137 ~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~ 214 (494)
+.... .++++++....|.+ +.+.++..|..++.++++++ +..++++++.+++++|++|.+++.+|.
T Consensus 97 l~~~~-----------~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~~-~~~~~~~~~~~i~~~t~lV~~~h~et~ 164 (377)
T 3e77_A 97 LIGLK-----------AGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLGS-YTKIPDPSTWNLNPDASYVYYCANETV 164 (377)
T ss_dssp HGGGS-----------TTCEEEECCCSHHHHHHHHHHTTTSEEEECSCCCSS-SCSCCCGGGCCCCTTCSCEEEESEETT
T ss_pred ccCCC-----------CCCeEEEEECCHHHHHHHHHHHHhCCceEEeccCCC-cCCCCChHHhccCCCccEEEEeCccCc
Confidence 63210 02467666666654 34456667877777787654 457777788888889999999999999
Q ss_pred cccccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCC
Q 011057 215 NGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKE 294 (494)
Q Consensus 215 tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~ 294 (494)
||.+.|+ +|+++ +++++||++++.+..|+ |+. ..+++++++|||+ +|.|+|+++++++.
T Consensus 165 tG~~~pi-----i~~~~------~~~~~vD~~q~~g~~~i-------d~~--~~~~~~~s~~K~~-gp~G~g~l~~~~~~ 223 (377)
T 3e77_A 165 HGVEFDF-----IPDVK------GAVLVCDMSSNFLSKPV-------DVS--KFGVIFAGAQKNV-GSAGVTVVIVRDDL 223 (377)
T ss_dssp TTEECSS-----CCCCT------TCCEEEECTTTTTSSCC-------CGG--GCSEEEEEGGGTT-SCTTCEEEEEETTS
T ss_pred hheEchh-----hhccC------CCEEEEEcccccCCCCC-------chh--hcCEEEEeccccc-CCCccEEEEEcHHH
Confidence 9999998 46777 99999999999876654 332 2345889999999 69999999998764
Q ss_pred CcccccccccCCCC--CCCCCcccccCcchHHHHHHHHHHHHhcHh-HHHHHHHHHHHHHHHHHHHHhhCCCeEEeecC-
Q 011057 295 DLPEELIFHINYLG--ADQPTFTLNFSKGSSQVIAQYYQLIRLGFE-GYRNVMENCHENAMVLKEGLEKTGRFNIVSKD- 370 (494)
Q Consensus 295 ~~~~~~~~~~~y~~--~~~~~~~~~~s~~~~~~~a~~~al~~l~~~-g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~- 370 (494)
. ....+..+.|+. .........+|++...++++.++++.+.++ |++++.++..+++++++++|++++++.+....
T Consensus 224 l-~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~ 302 (377)
T 3e77_A 224 L-GFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEP 302 (377)
T ss_dssp C-SCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCG
T ss_pred H-hhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCH
Confidence 2 111112222221 000111223688888889999999999888 89999999999999999999999878864321
Q ss_pred -CCcc-EEEEEecCCCC-CCH-HHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHH
Q 011057 371 -EGVP-LVAFSLKDNKR-HDE-FEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHE 443 (494)
Q Consensus 371 -~~~~-~v~f~~~~~~~-~~~-~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~ 443 (494)
.+.+ +++|.+++... .+. ..+.+.|.++||.+..... ....+|+|++.++|.+|||+|++.|++++++
T Consensus 303 ~~rs~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~~~g~~-----~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 303 QNRSKMNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHR-----SVGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp GGBCSSEEEEEESSTTCCHHHHHHHHHHHHHTTEESCBCCT-----TTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCcEEEEEcCCCCCchhHHHHHHHHHHHCCcEEeCCCC-----cCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 1344 68999865211 111 3577888899998643211 1234999999999999999999999998765
No 43
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.97 E-value=7.4e-28 Score=246.21 Aligned_cols=363 Identities=14% Similarity=0.027 Sum_probs=240.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhhcCCCCC-cccccccCCCh-HHHHHHH--HHHhcc-cCCCCCCChhhHHHHHHHHHH
Q 011057 29 RFTMPENSIPKEAAYQIINDELMLDGNPRL-NLASFVTTWME-PECDKLM--MAAINK-NYVDMDEYPVTTELQNRCVNI 103 (494)
Q Consensus 29 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-p~~~~~~--~~~~~~-~~~~~~~~~~~~~le~~~~~~ 103 (494)
..++| .+.++.++++.+......+..+.. .++.+.+.... +.+.+++ ...+.. ++..+..+++..+++.+++++
T Consensus 38 ~~~lp-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 116 (438)
T 1wyu_A 38 PIDLP-EPLPEWKVLEELRRLAAQNLPAHKAFLGGGVRSHHVPPVVQALAARGEFLTAYTPYQPEVSQGVLQATFEYQTM 116 (438)
T ss_dssp CCCCC-CCCCHHHHHHHHHHHHHTSCCCTTCCCCSSCCCCCCCHHHHHHHTSHHHHHCCSCCSGGGCHHHHHHHHHHHHH
T ss_pred CCCCC-CCCCHHHHHHHHHHHHhcCcCccccccCCCccCCcCcHHHHHHHhcchhhhcCCCCcchhhhhHHHHHHHHHHH
Confidence 34788 789999999988776543322122 22333333333 3443333 222222 111123477888999999999
Q ss_pred HHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHH----HHcCCeeE
Q 011057 104 IARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFA----RYFEVELK 179 (494)
Q Consensus 104 la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~----~~~G~~v~ 179 (494)
+++++|++. ..+.+++|+|.++..++.+++.. . +++|+++.++|+++...+ +..|++++
T Consensus 117 la~~~g~~~-----~~i~~~~g~taa~ea~~~a~~~~-------~-----gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~ 179 (438)
T 1wyu_A 117 IAELAGLEI-----ANASMYDGATALAEGVLLALRET-------G-----RMGVLVSQGVHPEYRAVLRAYLEAVGAKLL 179 (438)
T ss_dssp HHHHHTSSE-----ECSCBSSHHHHHHHHHHHHHHHH-------T-----CCEEEEETTSCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHhCCCc-----cceEEeCcHHHHHHHHHHHHhcC-------C-----CCEEEEcCccCHhHHHHHHHHHHHCCCEEE
Confidence 999999975 34678999994433333332211 1 268999999999887544 55899999
Q ss_pred EEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEEEecc-cccccccccCCc
Q 011057 180 EVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAA-SGGFIAPFLYPE 258 (494)
Q Consensus 180 ~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a-~~~~~~~~~~~~ 258 (494)
.++++ ++.+|+++ ++++|++|+++++ |++|.+.|+++|+++|+++ |+++|+|.. ++.+.. ..+
T Consensus 180 ~v~~~--~~~~d~~~----i~~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~------g~~vivd~d~~a~g~~--~~~- 243 (438)
T 1wyu_A 180 TLPLE--GGRTPLPE----VGEEVGAVVVQNP-NFLGALEDLGPFAEAAHGA------GALFVAVADPLSLGVL--KPP- 243 (438)
T ss_dssp EECCB--TTBCCCCC----CCTTEEEEEEESS-CTTSBCCCHHHHHHHHHHT------TCEEEEECCTTGGGTB--CCH-
T ss_pred EEcCc--CCccCHHH----hCCCeEEEEEECC-CCCeEEecHHHHHHHHHHc------CCEEEEEechhhccCc--CCC-
Confidence 99873 25788766 6778999999998 9999999999999999999 999997754 332221 111
Q ss_pred ccccccCCCceEEEEcCcc-----cCCcCCceEEEEEeCCCCcccccccc-----cCCCCCCCCCcc------------c
Q 011057 259 LEWDFRLPLVKSINVSGHK-----YGLVYAGIGWVIWRNKEDLPEELIFH-----INYLGADQPTFT------------L 316 (494)
Q Consensus 259 ~~~~~~~~~~D~~~~~~hK-----~l~~p~g~G~~~~~~~~~~~~~~~~~-----~~y~~~~~~~~~------------~ 316 (494)
+..++|++++++|| |+++| |+|+++++++ .. ..+... .++.+. ..+. .
T Consensus 244 -----~~~g~D~~~~s~kk~~~~~~~~Gp-~~G~l~~~~~-~~-~~l~~~~~g~~~~~~~~--~~~~~~l~~~~~~~r~~ 313 (438)
T 1wyu_A 244 -----GAYGADIAVGDGQSLGLPMGFGGP-HFGFLATKKA-FV-RQLPGRLVSETVDVEGR--RGFILTLQAREQYIRRA 313 (438)
T ss_dssp -----HHHTCSEEEEECTTTTCCCGGGCS-CCEEEEECGG-GG-GGCCSCCEEEEEBTTSC--EEEEECCGGGSHHHHGG
T ss_pred -----ccCCCCEEEECCcccCCCccCCCC-CeeEEEEcHH-HH-HhCCCceeccccccCCC--cceeeeccccccccchh
Confidence 11268999999888 55666 9999988754 22 211110 000000 0000 0
Q ss_pred ccCcch---HHHHHHHHH--HHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccEEEEEecCCCCCCHHHH
Q 011057 317 NFSKGS---SQVIAQYYQ--LIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEV 391 (494)
Q Consensus 317 ~~s~~~---~~~~a~~~a--l~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l 391 (494)
.++.+. ...++++++ +..++.+|++++.++..++++++.++|++++++++..+.....++.|... .+..++
T Consensus 314 ~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~ 389 (438)
T 1wyu_A 314 KAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALP----KDPEAV 389 (438)
T ss_dssp GSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECS----SCHHHH
T ss_pred cccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCCCeEEEEEEeCC----CCHHHH
Confidence 122211 233444444 77888889999999999999999999999977998765323455566542 367899
Q ss_pred HHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHH
Q 011057 392 AELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVL 441 (494)
Q Consensus 392 ~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~ 441 (494)
.++|.++||.+.. .+....+...+|++++..+|.++++++++.|++++
T Consensus 390 ~~~L~~~gi~v~~--~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 390 RRALAERGFHGAT--PVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp HHHHHHTTCCCCE--ECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCceecc--ccccccCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 9999999998611 11111124579999999999999999999888763
No 44
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.96 E-value=2.3e-27 Score=242.44 Aligned_cols=370 Identities=12% Similarity=0.036 Sum_probs=256.7
Q ss_pred HHHHHHHHHHhhhhcCCCCCcccccccCC-ChHHHHHHHHHHhcccC-CCCCCChhhHHHHHHHHHHHHHHhCCCCCCCC
Q 011057 39 KEAAYQIINDELMLDGNPRLNLASFVTTW-MEPECDKLMMAAINKNY-VDMDEYPVTTELQNRCVNIIARLFNAPLEDSE 116 (494)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~-~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~ 116 (494)
.+.++.........+++..++|..+.+.. ++|.+.+++.+++.... ..|....+..++++.+.+++.+.+|.+.+
T Consensus 28 ~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~--- 104 (437)
T 3g0t_A 28 IRDLVALVTNLEKATGTKFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIP--- 104 (437)
T ss_dssp HHHHHHHHHHHHHHHTCCCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCC---
T ss_pred HHHHHHHHHHHHHhcCCCEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCC---
Confidence 44555554443334556666666655543 46788899888887544 44555556788999988888888887642
Q ss_pred CcceeeecChhHHHHHHHHHHH--HHHHHHHHhcCCCCCCC--eEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCH
Q 011057 117 TAVGVGTVGSSEAIMLAGLAFK--RKWQNKRKAEGKPFDKP--NIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDP 192 (494)
Q Consensus 117 ~~~~~~t~ggt~a~~~a~~a~~--~~~~~~~~~~g~~~~~~--~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~ 192 (494)
...+++|+|+++++.+++.++. .. ++ +|+++.++|..+...++..|++++.++++++++.+|+
T Consensus 105 ~~~i~~t~g~t~al~~~~~~l~~~~~-------------gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~ 171 (437)
T 3g0t_A 105 ARACVPTVGSMQGCFVSFLVANRTHK-------------NREYGTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLR 171 (437)
T ss_dssp GGGEEEESHHHHHHHHHHHHHTTSCT-------------TCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGGGGCTTHHH
T ss_pred cccEEEeCCHHHHHHHHHHHHhcCCC-------------CCccEEEEeCCCcHhHHHHHHHcCCEEEEEeecCCCCccCH
Confidence 2469999999999998888773 21 25 7999999999999999999999999999755567999
Q ss_pred HHHHHhh-hhCCeEEEEeeCCCCcccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCc-----ccccc
Q 011057 193 VKAVEMV-DENTICVAAILGSTLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPE-----LEWDF 263 (494)
Q Consensus 193 ~~L~~~i-~~~t~~vv~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~-----~~~~~ 263 (494)
++|++++ ++++++|++++++||||.+.| +++|+++|+++ |+++++|++|+.+...-..+. +...+
T Consensus 172 ~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 245 (437)
T 3g0t_A 172 EKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKH------DVIVIEDLAYFGMDFRKDYSHPGEPLYQPSV 245 (437)
T ss_dssp HHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCCTTSCCCSTTSSCCCCCG
T ss_pred HHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHC------CcEEEEEcchhhcccCCCcCcccccchhhcc
Confidence 9999999 778999999999999999976 77789999999 999999999987543200000 00122
Q ss_pred c-CCCceEEEEcCcccCC-cCCceEEEEEeCCCCccccc-ccccCC---------CCCCCCCcccccCcchHHHHHHHHH
Q 011057 264 R-LPLVKSINVSGHKYGL-VYAGIGWVIWRNKEDLPEEL-IFHINY---------LGADQPTFTLNFSKGSSQVIAQYYQ 331 (494)
Q Consensus 264 ~-~~~~D~~~~~~hK~l~-~p~g~G~~~~~~~~~~~~~~-~~~~~y---------~~~~~~~~~~~~s~~~~~~~a~~~a 331 (494)
. ..+.+++..+++|++. ++.++|+++++++ .+...+ .....+ +... .....++.+ .+++.++
T Consensus 246 ~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~a~ 319 (437)
T 3g0t_A 246 ANYTDNYILALSSSKAFSYAGQRIGVLMISGK-LYEREYPDLEESFGRLRFGEALSSSA--LYALSSGAT---HSAQWGM 319 (437)
T ss_dssp GGTCSCEEEEEESTTTTSCGGGCCEEEEECHH-HHHCBCGGGHHHHSCSBHHHHHHTTH--HHHHHSSSC---HHHHHHH
T ss_pred CCCCCcEEEEEcCccCCCCccceeEEEEECHH-HhhhhhhcccccccccchhHHHHHHH--HhhhcCCCC---HHHHHHH
Confidence 1 2456788889999986 6677899987642 221010 000000 0000 000011222 2333444
Q ss_pred HHHhcHhH-----HHHHHHHHHHHHHHHHHHHhhCCCeEEe------ecCCCccEEEEEecCCCCCCHHHHHHHHHhcCc
Q 011057 332 LIRLGFEG-----YRNVMENCHENAMVLKEGLEKTGRFNIV------SKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGW 400 (494)
Q Consensus 332 l~~l~~~g-----~~~~~~~~~~~a~~l~~~L~~~~~~~~~------~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi 400 (494)
...+.... +++..+++.++++++.+.|+++ ++++. .++....++.+.+. +.+..++.++|.++|+
T Consensus 320 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~L~~~gi 395 (437)
T 3g0t_A 320 AAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN-GFNIVYDKDGNEPLADGFYFTVGYK---GMDSSKLIEKFVRYGM 395 (437)
T ss_dssp HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT-TEEESSCEETTEECCSSSEEEEEET---TCCHHHHHHHHHHTTE
T ss_pred HHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCEEeccccCCCCCceeEEEEEecC---CCCHHHHHHHHHHcCe
Confidence 44333322 6788899999999999999999 58887 34224567777775 4578899999999999
Q ss_pred eeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHH
Q 011057 401 IVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLH 442 (494)
Q Consensus 401 ~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~ 442 (494)
.+.....+.. .....+|++++ ..+.++++++++.|+++++
T Consensus 396 ~v~~~~~~~~-~~~~~iRis~~-~~~~e~i~~~~~~l~~~~~ 435 (437)
T 3g0t_A 396 CAITLKTTGS-KRNEAMRICTS-LLPESQFPDLEKRLQMLNA 435 (437)
T ss_dssp ECEESTTTTC-CCTTCEEEECS-SSCGGGHHHHHHHHHHHHH
T ss_pred EEeeccccCC-CCCCEEEEEEe-cCCHHHHHHHHHHHHHHHh
Confidence 9865433321 12256999998 4589999999999988765
No 45
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.96 E-value=1e-28 Score=246.69 Aligned_cols=328 Identities=13% Similarity=0.087 Sum_probs=233.3
Q ss_pred CChHHHHHHHHHHhcccCC-----CCCCChhhHHHHHHHHHH-HHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHH
Q 011057 67 WMEPECDKLMMAAINKNYV-----DMDEYPVTTELQNRCVNI-IARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRK 140 (494)
Q Consensus 67 ~~~p~~~~~~~~~~~~~~~-----~~~~~~~~~~le~~~~~~-la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~ 140 (494)
++++.+.+++.+.+..... .+...........+++++ +++++|.+ .+++|+|+++|+.+++.++..
T Consensus 20 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~-------~v~~~~g~t~a~~~~~~~~~~- 91 (371)
T 2e7j_A 20 KLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD-------VARVTNGAREAKFAVMHSLAK- 91 (371)
T ss_dssp CCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS-------EEEEESSHHHHHHHHHHHHCC-
T ss_pred CCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC-------EEEEeCChHHHHHHHHHHHhC-
Confidence 4567888888877754310 011112334455678899 99999985 389999999999998888732
Q ss_pred HHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEe--ccCCccccCHHHHHHhhh-----hCCeEEEEeeCCC
Q 011057 141 WQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVK--LSEGYYVMDPVKAVEMVD-----ENTICVAAILGST 213 (494)
Q Consensus 141 ~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~--~~~~~~~~d~~~L~~~i~-----~~t~~vv~~~~~~ 213 (494)
.+++|+++.++|.++...++..|++++.++ ++++ +.+|+++|+++++ +++++|++++++|
T Consensus 92 ------------~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~n 158 (371)
T 2e7j_A 92 ------------KDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPD-YAITPENFAQTIEETKKRGEVVLALITYPDG 158 (371)
T ss_dssp ------------TTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTT-CCCCHHHHHHHHHHHTTTSCEEEEEEESSCT
T ss_pred ------------CCCEEEEccCcchHHHHHHHHcCCeEEEeecccCCC-CCcCHHHHHHHHHhhcccCCeEEEEEECCCC
Confidence 126899999999999999999999999999 7664 7899999999998 6788999999999
Q ss_pred CcccccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCC
Q 011057 214 LNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNK 293 (494)
Q Consensus 214 ~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~ 293 (494)
+||.+.|+++|.++|+++ |+++++|++|+.+..++ ++...++|+++.++||++++|.++|+++++++
T Consensus 159 ptG~~~~~~~i~~~~~~~------~~~li~D~a~~~~~~~~-------~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~ 225 (371)
T 2e7j_A 159 NYGNLPDVKKIAKVCSEY------DVPLLVNGAYAIGRMPV-------SLKEIGADFIVGSGHKSMAASGPIGVMGMKEE 225 (371)
T ss_dssp TTCCCCCHHHHHHHHHTT------TCCEEEECTTTBTTBCC-------CHHHHTCSEEEEEHHHHSSCCSSCEEEEECTT
T ss_pred CCcccCCHHHHHHHHHHc------CCeEEEECccccCCCCC-------ChhhcCCCEEEecCCcCCCCCCCcEEEEEech
Confidence 999999999999999999 99999999999865421 11112578999999999988889999998764
Q ss_pred CCccc-ccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHH--HHHHHHHHHHHhhCCCeEEeecC
Q 011057 294 EDLPE-ELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENC--HENAMVLKEGLEKTGRFNIVSKD 370 (494)
Q Consensus 294 ~~~~~-~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~--~~~a~~l~~~L~~~~~~~~~~~~ 370 (494)
.+.. .......+... ..+ ..++.+.....++.++++.+.. +..++. .++++++.+.|+++ ++++..+.
T Consensus 226 -~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~ 296 (371)
T 2e7j_A 226 -WAEIVLRRSEKYKNKE--VEL-LGCTARGATIITLMASFPHVRE----RIKRWDEEVEKARRFAAEMEKL-GIKQLGDN 296 (371)
T ss_dssp -TTTTTTCBCSSCTTSB--GGG-TTCCCCSHHHHHHHHHHHHHHH----HGGGHHHHHHHHHHHHHHHHHT-TCEEESSS
T ss_pred -hhhhhccccccCcccc--ccc-ccCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHc-CcEEecCC
Confidence 2211 11111111100 000 0133444445555566665533 456677 88999999999998 58887553
Q ss_pred C-CccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCC---CCCceEEE-EEeccC-CChHHHHHHHHHHHHHHHH
Q 011057 371 E-GVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPAD---AQHITVLR-VVIRED-FSRTLAERLVLDITKVLHE 443 (494)
Q Consensus 371 ~-~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~---~~~~~~lR-vs~~~~-~t~~~id~~i~~l~~~~~~ 443 (494)
. ..+++.+.++ +..++.++|.++|+.+.. ..+.. .....++| ++++.. ++.++++++++.|++++++
T Consensus 297 ~~~~~~~~~~~~-----~~~~~~~~l~~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~ 369 (371)
T 2e7j_A 297 PHNHDLMFFHAE-----VLYEISKKAKGGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK 369 (371)
T ss_dssp SCCSSEEEEECH-----HHHHHHHHSSSGGGHHHH-HHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred CccCceEEEECC-----CHHHHHHHHHHCCEEEEe-ccccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHh
Confidence 1 3578888763 467899999999998754 21110 01135699 999877 8999999999999988765
No 46
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.96 E-value=3.3e-28 Score=245.42 Aligned_cols=340 Identities=15% Similarity=0.050 Sum_probs=240.1
Q ss_pred CCCcccccccC--CChHHHHHHHHHHhcccCCCCC---CChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHH
Q 011057 56 PRLNLASFVTT--WMEPECDKLMMAAINKNYVDMD---EYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAI 130 (494)
Q Consensus 56 ~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~ 130 (494)
.++++.+..+. +++|.+.+++.+.+......+. ...+..+...++++++++++|.+. .+++++|++|+
T Consensus 44 ~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~-------~i~~~sGt~a~ 116 (399)
T 3tqx_A 44 EVLNFCANNYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGTDD-------TILYSSCFDAN 116 (399)
T ss_dssp EEEECSSCCTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHTCSE-------EEEESCHHHHH
T ss_pred eEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHCCCc-------EEEECchHHHH
Confidence 34455554332 3467888888877765322111 112344566678888999999863 56666779999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhh------CCe
Q 011057 131 MLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDE------NTI 204 (494)
Q Consensus 131 ~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~------~t~ 204 (494)
..++.++.. .++.|+++.++|.++...++..|++++.++. +|+++|++++++ +++
T Consensus 117 ~~~l~~~~~-------------~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~~~~~ 177 (399)
T 3tqx_A 117 GGLFETLLG-------------PEDAIISDELNHASIIDGIRLCKAQRYRYKN------NAMGDLEAKLKEADEKGARFK 177 (399)
T ss_dssp HTTHHHHCC-------------TTCEEEEETTCCHHHHHHHHSCCSEEEEECT------TCTTHHHHHHHHHHTTTCSSE
T ss_pred HHHHHHhcC-------------CCCEEEECCcccHHHHHHHHHcCCceeEeCC------CCHHHHHHHHHhhhccCCCce
Confidence 877766522 1368999999999999999999999988874 466788888876 789
Q ss_pred EEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCccccccc-CCCceEEEEcCcccCCcCC
Q 011057 205 CVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFR-LPLVKSINVSGHKYGLVYA 283 (494)
Q Consensus 205 ~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~D~~~~~~hK~l~~p~ 283 (494)
+|++++++|+||.+.|+++|.++|+++ ++++++|++|+.+..+..........+ ....|+++.++||+++++.
T Consensus 178 ~v~~~~~~nptG~~~~l~~i~~l~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~ 251 (399)
T 3tqx_A 178 LIATDGVFSMDGIIADLKSICDLADKY------NALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGAS 251 (399)
T ss_dssp EEEEESEETTTTEECCHHHHHHHHHHT------TCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSC
T ss_pred EEEEeCCCCCCCCcCCHHHHHHHHHHc------CCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCc
Confidence 999999999999999999999999999 999999999975432111101011112 2367999999999997566
Q ss_pred ceEEEEEeCCCCccccccc-ccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCC
Q 011057 284 GIGWVIWRNKEDLPEELIF-HINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTG 362 (494)
Q Consensus 284 g~G~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~ 362 (494)
| |+++.++. .+ +.+.. ...|. ..++.+.....++.++++.+. ++.++..++..++++++.+.|++++
T Consensus 252 g-G~~~~~~~-~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g 319 (399)
T 3tqx_A 252 G-GYTSGHKE-II-EWLRNRSRPYL--------FSNTVAPVIVATSLKVLELLK-TEGPQLRKQLQENSRYFRAGMEKLG 319 (399)
T ss_dssp C-EEEEECHH-HH-HHHHHHCHHHH--------SSCCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred e-EEEEcCHH-HH-HHHHHhCccee--------ccCCCcHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHcC
Confidence 6 88776542 22 21111 11111 112333344455556665543 5567888999999999999999985
Q ss_pred CeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHH
Q 011057 363 RFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLH 442 (494)
Q Consensus 363 ~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~ 442 (494)
+++..+ ..+++.+.+.. ..+..++.++|.++|+.+.....+....+..++|++++..+++++++++++.|+++++
T Consensus 320 -~~~~~~--~~~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 394 (399)
T 3tqx_A 320 -FQLVPG--NHPIIPVMLGD--AQLATNMADHLLQEGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGK 394 (399)
T ss_dssp -CCBCCC--SSSEEEEEEEC--HHHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred -CCcCCC--CCCEEEEEeCC--HHHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHHH
Confidence 776633 56788888743 2356789999999999987655444345567899999988999999999999999887
Q ss_pred HH
Q 011057 443 EL 444 (494)
Q Consensus 443 ~l 444 (494)
++
T Consensus 395 ~~ 396 (399)
T 3tqx_A 395 KL 396 (399)
T ss_dssp HT
T ss_pred Hh
Confidence 65
No 47
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.96 E-value=5.8e-28 Score=243.80 Aligned_cols=340 Identities=13% Similarity=0.068 Sum_probs=241.1
Q ss_pred CCCCCccccccc-CC-ChHHHHHHHHHHhcccCCCCC---CChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhH
Q 011057 54 GNPRLNLASFVT-TW-MEPECDKLMMAAINKNYVDMD---EYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSE 128 (494)
Q Consensus 54 ~~~~~~~~~~~~-~~-~~p~~~~~~~~~~~~~~~~~~---~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~ 128 (494)
++..++|..+.+ .. +++.+.+++.+.+......+. ...+..++.+++++++++++|.+. +++|+||++
T Consensus 42 g~~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~-------v~~~~ggt~ 114 (398)
T 3a2b_A 42 GRRVLMFGSNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGKEA-------AILFSTGFQ 114 (398)
T ss_dssp TEEEEECSCSCTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSE-------EEEESSHHH
T ss_pred CceEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCc-------EEEECCHHH
Confidence 334445555543 32 567788888887765332222 223556788889999999999853 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhh----CCe
Q 011057 129 AIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDE----NTI 204 (494)
Q Consensus 129 a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~----~t~ 204 (494)
|+.+++.++..+ +++|+++.++|.++..+++..|++++.+++ +|+++|++++++ +++
T Consensus 115 a~~~~~~~~~~~-------------gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~------~d~~~l~~~l~~~~~~~~~ 175 (398)
T 3a2b_A 115 SNLGPLSCLMGR-------------NDYILLDERDHASIIDGSRLSFSKVIKYGH------NNMEDLRAKLSRLPEDSAK 175 (398)
T ss_dssp HHHHHHHHSSCT-------------TCEEEEETTCCHHHHHHHHHSSSEEEEECT------TCHHHHHHHHHTSCSSSCE
T ss_pred HHHHHHHHHhCC-------------CCEEEECCccCHHHHHHHHHcCCceEEeCC------CCHHHHHHHHHhhccCCce
Confidence 999888876321 268999999999999999999999998884 688999999987 788
Q ss_pred EEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccC-CCceEEEEcCcccCCcCC
Q 011057 205 CVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRL-PLVKSINVSGHKYGLVYA 283 (494)
Q Consensus 205 ~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~-~~~D~~~~~~hK~l~~p~ 283 (494)
+|++++++||||.+.|+++|.++|+++ ++++++|++|+.+............++. +++|+++.++||++. |.
T Consensus 176 ~v~~~~~~nptG~~~~~~~l~~~~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~ 248 (398)
T 3a2b_A 176 LICTDGIFSMEGDIVNLPELTSIANEF------DAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLA-SL 248 (398)
T ss_dssp EEEEESBCTTTCCBCCHHHHHHHHHHH------TCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTC-SS
T ss_pred EEEEeCCCCCCCCccCHHHHHHHHHHc------CcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEeccccccc-CC
Confidence 999999999999999999999999999 9999999999876421100111001111 247999999999986 66
Q ss_pred ceEEEEEeCCCCccccccc-ccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCC
Q 011057 284 GIGWVIWRNKEDLPEELIF-HINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTG 362 (494)
Q Consensus 284 g~G~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~ 362 (494)
| |++++++ ..+ +.+.. ...+. ..++.+.....++.++++.+ +.+++..++..++++++.+.|+++
T Consensus 249 G-G~~~~~~-~~~-~~l~~~~~~~~--------~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~- 314 (398)
T 3a2b_A 249 G-GFVAGDA-DVI-DFLKHNARSVM--------FSASMTPASVASTLKALEII--QNEPEHIEKLWKNTDYAKAQLLDH- 314 (398)
T ss_dssp C-EEEEECH-HHH-HHHHHHCHHHH--------SSBCCCHHHHHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHHHT-
T ss_pred C-cEEEeCH-HHH-HHHHHhcccce--------ecCCCCHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHHHhc-
Confidence 6 8887753 222 22111 11111 11222223333344556543 224577888889999999999998
Q ss_pred CeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHH
Q 011057 363 RFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLH 442 (494)
Q Consensus 363 ~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~ 442 (494)
++++..+ ..+++.+.++. +.+..++.++|.++|+.+.....+....+..++|++++..+++++++++++.|+++++
T Consensus 315 g~~~~~~--~g~~~~~~~~~--~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~ 390 (398)
T 3a2b_A 315 GFDLGAT--ESPILPIFIRS--NEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFK 390 (398)
T ss_dssp TCCBCSC--CSSEEEEECCC--HHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCcCCC--CCCEEEEEcCC--HHHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 4776543 35777777732 3456789999999999986544432223457899999988899999999999998876
Q ss_pred HH
Q 011057 443 EL 444 (494)
Q Consensus 443 ~l 444 (494)
++
T Consensus 391 ~~ 392 (398)
T 3a2b_A 391 QA 392 (398)
T ss_dssp HC
T ss_pred Hh
Confidence 54
No 48
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.96 E-value=1.1e-26 Score=233.85 Aligned_cols=360 Identities=13% Similarity=0.053 Sum_probs=244.7
Q ss_pred HHHHHHHHHhhhhcCCCCCcccccccCCC-hHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCc
Q 011057 40 EAAYQIINDELMLDGNPRLNLASFVTTWM-EPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETA 118 (494)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~ 118 (494)
.++.+..++. ..+++..++|.++.+..+ +|.+.+++.+.+......|....+..++++++.+++.+.+|.+.+ ..
T Consensus 17 ~~~~~~~~~~-~~~g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~---~~ 92 (391)
T 3h14_A 17 MDVMEAARRA-EEAGRRIIHMEVGQPGTGAPRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLD---PG 92 (391)
T ss_dssp HHHHHHHHHH-HHTTCCCEECCCSSCSSCSCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCC---GG
T ss_pred HHHHHHHHHH-HhcCCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCC---HH
Confidence 4444443332 245666677777665543 677899998888765555555556788999999999988886542 24
Q ss_pred ceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCC-ccccCHHHHHH
Q 011057 119 VGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEG-YYVMDPVKAVE 197 (494)
Q Consensus 119 ~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~ 197 (494)
.+++|+|+++|+.+++.++..+ +++|+++.++|..+...++..|++++.++++++ ++.+|+++|++
T Consensus 93 ~v~~t~g~~~al~~~~~~l~~~-------------gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~ 159 (391)
T 3h14_A 93 RVVITPGSSGGFLLAFTALFDS-------------GDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAG 159 (391)
T ss_dssp GEEEESSHHHHHHHHHHHHCCT-------------TCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTT
T ss_pred HEEEecChHHHHHHHHHHhcCC-------------CCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHh
Confidence 6999999999999888777321 268999999999999999999999999999753 36789999988
Q ss_pred hhhhCCeEEEEeeCCCCcccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEc
Q 011057 198 MVDENTICVAAILGSTLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVS 274 (494)
Q Consensus 198 ~i~~~t~~vv~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 274 (494)
+ ++++|++++++||||.+.| +++|+++|+++ ++++++|++|+.+.. ... ..........+++..+
T Consensus 160 ~---~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~--~~~-~~~~~~~~~~~i~~~s 227 (391)
T 3h14_A 160 L---DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQ------GASFISDEIYHGIEY--EAK-AVTALELTDECYVINS 227 (391)
T ss_dssp S---CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBS--SSC-CCCGGGTCSSSEEEEE
T ss_pred c---CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHc------CCEEEEECcchhccc--CCC-CcChhhcCCCEEEEEe
Confidence 7 7889999999999999977 88899999999 999999999987542 111 1111122345677778
Q ss_pred CcccCC-cCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHH
Q 011057 275 GHKYGL-VYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMV 353 (494)
Q Consensus 275 ~hK~l~-~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~ 353 (494)
++|++. ++.++|+++++++ .. +.+....... .++.+.....++.+++. ..+.+++..++..+++++
T Consensus 228 ~sK~~g~~G~r~G~~~~~~~-~~-~~~~~~~~~~---------~~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~ 294 (391)
T 3h14_A 228 FSKYFSMTGWRVGWMVVPED-QV-RVVERIAQNM---------FICAPHASQVAALAALD--CDAELQANLDVYKANRKL 294 (391)
T ss_dssp SSSTTCCTTSCCEEEECCGG-GH-HHHHHHHHHT---------TCCCCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHH
T ss_pred chhccCCccceeEEEEeCHH-HH-HHHHHHHhhh---------ccCCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHH
Confidence 999985 6778899886543 22 2211110000 11222233333334443 566778888899999999
Q ss_pred HHHHHhhCCCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhc-CceeeccccCCCCCCceEEEEEeccCCChHHHHH
Q 011057 354 LKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRF-GWIVPAYTMPADAQHITVLRVVIREDFSRTLAER 432 (494)
Q Consensus 354 l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~ 432 (494)
+.+.|++++ +.....+....++.+.+.. .+.+..++.++|.++ |+.+..........+..++|++++. ++++++.
T Consensus 295 l~~~l~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~--~~~~i~~ 370 (391)
T 3h14_A 295 MLERLPKAG-FTRIAPPDGAFYVYADVSD-LTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR--ATADIEE 370 (391)
T ss_dssp HHHHHHHHT-CCCBCCCCBTTEEEEECTT-TCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS--CHHHHHH
T ss_pred HHHHHHHcC-CCcccCCCeeEEEEEecCc-cCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC--CHHHHHH
Confidence 999999986 5443333233345555542 245788999998775 9998654433222346789999885 7788888
Q ss_pred HHHHHHHHHHHHh
Q 011057 433 LVLDITKVLHELD 445 (494)
Q Consensus 433 ~i~~l~~~~~~l~ 445 (494)
+++.|++++++..
T Consensus 371 ~l~~l~~~~~~~~ 383 (391)
T 3h14_A 371 GLDRLEAFMQARG 383 (391)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhc
Confidence 8888887776543
No 49
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.96 E-value=2.6e-27 Score=238.07 Aligned_cols=346 Identities=10% Similarity=0.002 Sum_probs=242.8
Q ss_pred cCCCCCcccccccCC-ChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHH
Q 011057 53 DGNPRLNLASFVTTW-MEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIM 131 (494)
Q Consensus 53 ~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~ 131 (494)
+++..++|..+.+.. ++|.+.+++.+.++.....|...++..++++++.+++.+.+|.+.+ ...+++|+|+++|+.
T Consensus 28 ~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~---~~~v~~~~g~~~a~~ 104 (388)
T 1j32_A 28 EGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYG---ADNILVTNGGKQSIF 104 (388)
T ss_dssp TTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCC---GGGEEEESHHHHHHH
T ss_pred cCCCEEECCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCC---hhhEEEcCCHHHHHH
Confidence 455555666655443 4577888888887654444555567889999999999998887542 245899999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccC-CccccCHHHHHHhhhhCCeEEEEee
Q 011057 132 LAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSE-GYYVMDPVKAVEMVDENTICVAAIL 210 (494)
Q Consensus 132 ~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~t~~vv~~~ 210 (494)
+++.++..+ +++|+++.++|.++...++..|++++.+++++ +++.+|+++|++++++++++|++++
T Consensus 105 ~~~~~~~~~-------------gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~ 171 (388)
T 1j32_A 105 NLMLAMIEP-------------GDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNT 171 (388)
T ss_dssp HHHHHHCCT-------------TCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEES
T ss_pred HHHHHhcCC-------------CCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEeC
Confidence 988877321 25899999999999999999999999999874 2467999999999988889999999
Q ss_pred CCCCccccc---CHHHHHHHHHHhhcccCCCceEEEecccccccccccCCccc--cccc--CCCceEEEEcCcccCC-cC
Q 011057 211 GSTLNGEFE---DVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELE--WDFR--LPLVKSINVSGHKYGL-VY 282 (494)
Q Consensus 211 ~~~~tG~~~---~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~~--~~~~D~~~~~~hK~l~-~p 282 (494)
++||||.+. ++++|.++|+++ |+++++|++|+.+.. ...... ..+. ..+.|++..++||++. ++
T Consensus 172 p~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G 243 (388)
T 1j32_A 172 PSNPTGMVYTPDEVRAIAQVAVEA------GLWVLSDEIYEKILY--DDAQHLSIGAASPEAYERSVVCSGFAKTYAMTG 243 (388)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBC--TTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEEccchhccc--CCCCCCCHHHccccccCCEEEEeechhccCCcc
Confidence 999999984 599999999999 999999999987642 111100 0111 1247889999999984 33
Q ss_pred CceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHh--cHhHHHHHHHHHHHHHHHHHHHHhh
Q 011057 283 AGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRL--GFEGYRNVMENCHENAMVLKEGLEK 360 (494)
Q Consensus 283 ~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l--~~~g~~~~~~~~~~~a~~l~~~L~~ 360 (494)
.++|+++++++ .. +.+....... + ...+ .+++++++..+ +.+.+++..++..++++++.+.|++
T Consensus 244 ~r~G~~~~~~~-~~-~~l~~~~~~~-------~--~~~~---~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~ 309 (388)
T 1j32_A 244 WRVGFLAGPVP-LV-KAATKIQGHS-------T--SNVC---TFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNA 309 (388)
T ss_dssp TCCEEEECCHH-HH-HHHHHHHHTT-------T--CSCC---HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cceEEEEeCHH-HH-HHHHHHHhhc-------c--cCCC---HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45899886542 21 2111110000 0 1111 22333333333 3455778888899999999999999
Q ss_pred CCCeEEeecCCCccEEE-EEecCCCCCCHHHHHHHHHh-cCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHH
Q 011057 361 TGRFNIVSKDEGVPLVA-FSLKDNKRHDEFEVAELLRR-FGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDIT 438 (494)
Q Consensus 361 ~~~~~~~~~~~~~~~v~-f~~~~~~~~~~~~l~~~L~~-~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~ 438 (494)
++++++..+. .+++. +.+.. .+.+..++.++|.+ +|+.+....... ...++|+++. +++++++++++.|+
T Consensus 310 ~~g~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g~~~~---~~~~iRis~~--~~~~~i~~~~~~l~ 381 (388)
T 1j32_A 310 MPGLECPKPD--GAFYMFPSIAK-TGRSSLDFCSELLDQHQVATVPGAAFG---ADDCIRLSYA--TDLDTIKRGMERLE 381 (388)
T ss_dssp CTTCBCCCCC--BTTEECCBCGG-GTCCHHHHHHHHHHHHCEECEEGGGGT---CTTBEEEECC--SCHHHHHHHHHHHH
T ss_pred CCCCcccCCC--eeEEEEEecCC-CCCCHHHHHHHHHHhCCEEEeChhhhC---CCCcEEEEec--CCHHHHHHHHHHHH
Confidence 8778766543 34433 34421 13467889999986 799875433221 1346999986 58899999999998
Q ss_pred HHHHHH
Q 011057 439 KVLHEL 444 (494)
Q Consensus 439 ~~~~~l 444 (494)
++++++
T Consensus 382 ~~l~~~ 387 (388)
T 1j32_A 382 KFLHGI 387 (388)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887764
No 50
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.96 E-value=1.3e-27 Score=239.70 Aligned_cols=316 Identities=11% Similarity=0.037 Sum_probs=229.3
Q ss_pred CChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHH-
Q 011057 89 EYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCW- 167 (494)
Q Consensus 89 ~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~- 167 (494)
.++.+.++.+++++++++++|.+. .+++|+|||+|+..++..+ . .+++|+++...|++.
T Consensus 29 ~~~~~~~~~~~~~~~l~~~~~~~~------~v~~~~sgt~a~~~~~~~~-~-------------~gd~vi~~~~~~~~~~ 88 (379)
T 3ke3_A 29 MSKAFQEVMNDLLSNLKTVYNAEA------AVIIPGSGTYGMEAVARQL-T-------------IDEDCLIIRNGWFSYR 88 (379)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCSE------EEEEESCHHHHHHHHHHHH-C-------------TTCEEEEEECSHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCC------EEEEcCChhHHHHHHHHhC-C-------------CCCeEEEEeCCchhHH
Confidence 356777888899999999999862 4788899999998765433 1 126888888887653
Q ss_pred -HHHHHHcCC--eeEEEeccCC-------c-cccCHHHHHHhhh-hCCeEEEEeeCCCCcccccC---HHHHHHHHHHhh
Q 011057 168 -EKFARYFEV--ELKEVKLSEG-------Y-YVMDPVKAVEMVD-ENTICVAAILGSTLNGEFED---VKLLNDLLAEKN 232 (494)
Q Consensus 168 -~~~~~~~G~--~v~~v~~~~~-------~-~~~d~~~L~~~i~-~~t~~vv~~~~~~~tG~~~~---l~~I~~la~~~~ 232 (494)
...++..|+ +++.++.+.. . ..+|+++|++++. .++++|++++++|++|.+.| +++|+++|+++
T Consensus 89 ~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~- 167 (379)
T 3ke3_A 89 WTQILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSV- 167 (379)
T ss_dssp HHHHHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhCCCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHc-
Confidence 345666675 6777776431 1 2589999999996 47999999999999999999 99999999999
Q ss_pred cccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCccccccc--ccCCCCC-
Q 011057 233 KETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIF--HINYLGA- 309 (494)
Q Consensus 233 ~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~--~~~y~~~- 309 (494)
|+++|+|++++ +..++ ++...++|++++++|||+++|.|+|+++++++. + +.+.. ...+...
T Consensus 168 -----~~~li~D~~~~-g~~~~-------~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~-~-~~l~~~~~~~~~~~~ 232 (379)
T 3ke3_A 168 -----GGLLVIDCIAS-GCVWL-------DMKELGIDVLISAPQKGWSSTPCAGLVMLSAAA-I-KKVESTESNCFSLDL 232 (379)
T ss_dssp -----TCEEEEECTTC-TTCCC-------CHHHHTCSEEEECTTTTTCSCCCEEEEEECHHH-H-HHHHTCCCSCSTTCH
T ss_pred -----CCEEEEEeccc-CCccc-------cccccCCCEEEecchhhcCCCCceEEEEECHHH-H-HhhhcCCCCceeecH
Confidence 99999999998 53322 222236899999999999999999999887532 1 11110 0111100
Q ss_pred ----------CCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCC-Ccc-EEE
Q 011057 310 ----------DQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDE-GVP-LVA 377 (494)
Q Consensus 310 ----------~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~-~~~-~v~ 377 (494)
......+.++.+...+.++.++++.+..+|++++.++..+++++++++|++++ ++++.++. ..+ ++.
T Consensus 233 ~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g-~~~~~~~~~~~~~i~~ 311 (379)
T 3ke3_A 233 KQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKG-IESVAAEGFEAPGVVV 311 (379)
T ss_dssp HHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCBSBCTTCBCSSEEE
T ss_pred HHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcC-CEecCCccccCceEEE
Confidence 00001122466677778888999988888899999999999999999999995 88766542 244 344
Q ss_pred EEecCCCCCCHHHHHHHHHhcCceeeccccCCC--CCCceEEEEEeccCCChHHHHHHHHHHHHHHHHHh
Q 011057 378 FSLKDNKRHDEFEVAELLRRFGWIVPAYTMPAD--AQHITVLRVVIREDFSRTLAERLVLDITKVLHELD 445 (494)
Q Consensus 378 f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~--~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~ 445 (494)
+...+ ....+.+.|.++|+.+.....+.. ..+..++|++++.++|.+||+++++.|+++++++.
T Consensus 312 ~~~~~----~~~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 312 SYTER----DDMHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp EECSC----HHHHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred EccCC----cchHHHHHHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence 44321 122236789999998865443321 12356899999999999999999999999988775
No 51
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.96 E-value=7.3e-29 Score=247.33 Aligned_cols=331 Identities=13% Similarity=-0.019 Sum_probs=225.1
Q ss_pred cCCChHHHHHHHHHHhcc---cCCC----CCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceee-ecChhHHHHHHHHH
Q 011057 65 TTWMEPECDKLMMAAINK---NYVD----MDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVG-TVGSSEAIMLAGLA 136 (494)
Q Consensus 65 ~~~~~p~~~~~~~~~~~~---~~~~----~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~-t~ggt~a~~~a~~a 136 (494)
|++.++.+.+++...+.+ |+.+ ...++.+.++.+++++.+++++|.+.+ ..++| |+|+|+++.+++..
T Consensus 35 pt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~----~evif~t~~~T~a~n~ai~~ 110 (386)
T 3qm2_A 35 PAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSN----YKVLFCHGGGRGQFAGVPLN 110 (386)
T ss_dssp SCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTT----EEEEEEESCTTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC----ceEEEEcCCchHHHHHHHHh
Confidence 456678888888766543 2211 112345566777899999999999641 34777 68999999988776
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEeCCCcch--HHHHHHHHcCCeeEEEecc--CCccccCHHHHHHhhhhCCeEEEEeeCC
Q 011057 137 FKRKWQNKRKAEGKPFDKPNIVTGANVQV--CWEKFARYFEVELKEVKLS--EGYYVMDPVKAVEMVDENTICVAAILGS 212 (494)
Q Consensus 137 ~~~~~~~~~~~~g~~~~~~~vi~~~~~h~--s~~~~~~~~G~~v~~v~~~--~~~~~~d~~~L~~~i~~~t~~vv~~~~~ 212 (494)
+... ++++++....|. .+...++..| +++.++++ +++..+++++++++++++|++|++++.+
T Consensus 111 l~~~-------------gd~v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~e 176 (386)
T 3qm2_A 111 LLGD-------------KTTADYVDAGYWAASAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLSDNAAYLHYCPNE 176 (386)
T ss_dssp HCTT-------------CCEEEEEESSHHHHHHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCCTTCSCEEECSEE
T ss_pred ccCC-------------CCeEEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcCCCCcEEEEECCc
Confidence 6221 145543333333 2444567779 99999988 3322378888888999999999999999
Q ss_pred CCcccc-cCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEe
Q 011057 213 TLNGEF-EDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWR 291 (494)
Q Consensus 213 ~~tG~~-~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~ 291 (494)
|.+|.+ .|+++|+ + ++++|||++++.+..|+ |+. ..|++.+++|||+ +|.|+|+++++
T Consensus 177 t~tG~~i~pi~~i~-----~------g~~~~vDa~qs~g~~pi-------dv~--~~~~~~~s~hK~l-GP~G~g~l~v~ 235 (386)
T 3qm2_A 177 TIDGIAIDETPDFG-----P------EVVVTADFSSTILSAPL-------DVS--RYGVIYAGAQKNI-GPAGLTLVIVR 235 (386)
T ss_dssp TTTTEECCCCCCCC-----T------TCCEEEECTTTTTSSCC-------CGG--GCSEEEEETTTTT-CCTTEEEEEEE
T ss_pred CCcCEecCchhhhc-----C------CCEEEEEcccccCCCCC-------Ccc--ccCEEEEeccccc-CCCccEEEEEC
Confidence 999996 9999986 6 99999999999877654 332 2345678999999 69999999998
Q ss_pred CCCCcccccccccCCCC--CCCCCcccccCcchHHHHHHHHHHHHhcHh-HHHHHHHHHHHHHHHHHHHHhhCCCe-EEe
Q 011057 292 NKEDLPEELIFHINYLG--ADQPTFTLNFSKGSSQVIAQYYQLIRLGFE-GYRNVMENCHENAMVLKEGLEKTGRF-NIV 367 (494)
Q Consensus 292 ~~~~~~~~~~~~~~y~~--~~~~~~~~~~s~~~~~~~a~~~al~~l~~~-g~~~~~~~~~~~a~~l~~~L~~~~~~-~~~ 367 (494)
++.. ....+..+.++. .........+|++...++++.++++.+..+ |++++.++..+++++++++|++++ + ...
T Consensus 236 ~~~~-~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~-~~~~~ 313 (386)
T 3qm2_A 236 EDLL-GKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSD-FYRND 313 (386)
T ss_dssp GGGC-SCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCS-SEECC
T ss_pred HHHH-hhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCC-CcccC
Confidence 7532 111111122211 000111123577777889999999999888 899999999999999999999986 5 332
Q ss_pred ecC-C-CccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHH
Q 011057 368 SKD-E-GVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHE 443 (494)
Q Consensus 368 ~~~-~-~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~ 443 (494)
.++ . ..++++|.+++ .+++ ..+.+.|.++||.+...... ...+|+|+..++|.+|||+|++.|+++.++
T Consensus 314 ~~~~~rs~~iv~f~~~~-~~~~-~~~~~~L~~~gI~~~~g~~~-----~~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 314 VAQANRSRMNVPFQLAD-NTLD-KVFLEESFAAGLHALKGHRV-----VGGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp BCGGGBCSSEEEEEESS-GGGH-HHHHHHHHHTTEECCBCCTT-----TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHcCceEEEEECCC-cccc-HHHHHHHHHCCCEEeCCCCC-----cCeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 222 1 33589999964 2344 57888899999986432111 123999999999999999999999988764
No 52
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.96 E-value=5.8e-27 Score=237.14 Aligned_cols=350 Identities=12% Similarity=0.026 Sum_probs=244.1
Q ss_pred cCCCCCccccccc---C-CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhH
Q 011057 53 DGNPRLNLASFVT---T-WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSE 128 (494)
Q Consensus 53 ~~~~~~~~~~~~~---~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~ 128 (494)
.++..++|..+.+ . +.++.+.+++.+.+......|...++..++++.+.+++.+.+|.+.+ ...+++|+|+++
T Consensus 36 ~g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~---~~~v~~t~g~~~ 112 (406)
T 1xi9_A 36 KGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDIT---PDDVRVTAAVTE 112 (406)
T ss_dssp TTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCC---GGGEEEESHHHH
T ss_pred cCCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCC---HHHEEEcCChHH
Confidence 3455555555554 2 34577888888887654434555556789999999999888886542 246899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccC-CccccCHHHHHHhhhhCCeEEE
Q 011057 129 AIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSE-GYYVMDPVKAVEMVDENTICVA 207 (494)
Q Consensus 129 a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~t~~vv 207 (494)
|+.+++.++.. .+++|+++.++|.++...++..|++++.+++++ +++.+|+++|++++++++++|+
T Consensus 113 al~~~~~~l~~-------------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~ 179 (406)
T 1xi9_A 113 ALQLIFGALLD-------------PGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIA 179 (406)
T ss_dssp HHHHHHHHHCC-------------TTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEE
T ss_pred HHHHHHHHhCC-------------CCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCcCceEEE
Confidence 99988887722 126899999999999999999999999999875 3467999999999988889999
Q ss_pred EeeCCCCcccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcc-cccccCCCc-eEEEEcCcccCC-c
Q 011057 208 AILGSTLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPEL-EWDFRLPLV-KSINVSGHKYGL-V 281 (494)
Q Consensus 208 ~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~-D~~~~~~hK~l~-~ 281 (494)
+++++||||.+.| +++|.++|+++ |+++++|++|+.+.. ..+.. -..+. .+. |++..+++|++. +
T Consensus 180 i~~p~nptG~~~~~~~l~~i~~~a~~~------~~~li~De~~~~~~~--~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~ 250 (406)
T 1xi9_A 180 VINPNNPTGALYDKKTLEEILNIAGEY------EIPVISDEIYDLMTY--EGEHISPGSLT-KDVPVIVMNGLSKVYFAT 250 (406)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHH------TCCEEEECTTTTCBS--SSCCCCHHHHC-SSSCEEEEEESTTTTCCG
T ss_pred EECCCCCCCCCcCHHHHHHHHHHHHHc------CCEEEEEcCcccccc--CCCCCCHHHcC-CCceEEEEeccccccCCC
Confidence 9999999999865 99999999999 999999999988642 11100 01112 345 788889999985 4
Q ss_pred CCceEEEEE-eCC----CCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHH
Q 011057 282 YAGIGWVIW-RNK----EDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKE 356 (494)
Q Consensus 282 p~g~G~~~~-~~~----~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~ 356 (494)
+.++|++++ .++ ... +.+.....+. ++.+.....++.++++. +.+.+++..++..++++++.+
T Consensus 251 G~r~G~~~~~~~~~~~~~l~-~~l~~~~~~~----------~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~ 318 (406)
T 1xi9_A 251 GWRLGYMYFVDPENKLSEVR-EAIDRLARIR----------LCPNTPAQFAAIAGLTG-PMDYLKEYMKKLKERRDYIYK 318 (406)
T ss_dssp GGCCEEEEEECTTCTTHHHH-HHHHHHHHHT----------CCSCSHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEEecCchhHHHHH-HHHHHHHHhh----------cCCCHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHH
Confidence 455899883 233 222 2111111110 11112233333444432 334577788888999999999
Q ss_pred HHhhCCCeEEeecCCCccEEEE-EecCCCCCCHHHHHHHHH-hcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHH
Q 011057 357 GLEKTGRFNIVSKDEGVPLVAF-SLKDNKRHDEFEVAELLR-RFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLV 434 (494)
Q Consensus 357 ~L~~~~~~~~~~~~~~~~~v~f-~~~~~~~~~~~~l~~~L~-~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i 434 (494)
.|++++++++..+ ..++++| .+....+.+..++.++|. ++|+.+....... ..+..++|+++. ++++++++++
T Consensus 319 ~L~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~-~~~~~~lRis~~--~~~~~i~~~~ 393 (406)
T 1xi9_A 319 RLNEIPGISTTKP--QGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFG-EYGAGHFRAVFL--PPIEILEEAM 393 (406)
T ss_dssp HHHTSTTEECCCC--CBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGC-GGGTTBEEEECC--SCHHHHHHHH
T ss_pred HHHhCCCCeeecC--CeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcC-CCCCCEEEEEec--CCHHHHHHHH
Confidence 9999877877543 3344443 553210346788999987 8999875433221 123457999997 7889999999
Q ss_pred HHHHHHHHHH
Q 011057 435 LDITKVLHEL 444 (494)
Q Consensus 435 ~~l~~~~~~l 444 (494)
+.|+++++++
T Consensus 394 ~~l~~~l~~~ 403 (406)
T 1xi9_A 394 DRFEKFMKER 403 (406)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9888887654
No 53
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.96 E-value=1.6e-26 Score=235.45 Aligned_cols=353 Identities=17% Similarity=0.103 Sum_probs=243.7
Q ss_pred CCCCcccccccC-----CChHHHHHHHHHHhcccC-CCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhH
Q 011057 55 NPRLNLASFVTT-----WMEPECDKLMMAAINKNY-VDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSE 128 (494)
Q Consensus 55 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~ 128 (494)
++.++|+.+.+. ++++.+.+++.+.+.... ..|....+..++++. ++++++......+...+++|+||++
T Consensus 54 ~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~----la~~~~~~~~~~~~~~v~~t~g~t~ 129 (427)
T 3dyd_A 54 KTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREE----IASYYHCPEAPLEAKDVILTSGCSQ 129 (427)
T ss_dssp SCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHH----HHHHHCBTTBCCCGGGEEEESSHHH
T ss_pred CCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHH----HHHHHhhcCCCCChHHEEEecCcHH
Confidence 344677776653 556889999988887642 244444566666655 6666652100001245899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccC-CccccCHHHHHHhhhhCCeEEE
Q 011057 129 AIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSE-GYYVMDPVKAVEMVDENTICVA 207 (494)
Q Consensus 129 a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~t~~vv 207 (494)
|+.+++.++... +++|+++.++|..+...++..|++++.+++++ +++.+|+++|++++++++++|+
T Consensus 130 al~~~~~~l~~~-------------gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~ 196 (427)
T 3dyd_A 130 AIDLCLAVLANP-------------GQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLI 196 (427)
T ss_dssp HHHHHHHHHCCT-------------TCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCTTEEEEE
T ss_pred HHHHHHHHhcCC-------------CCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCEEE
Confidence 999888887321 26899999999999999999999999999864 3468999999999998899999
Q ss_pred EeeCCCCcccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcc-c-ccccCCCceEEEEcCccc-CCc
Q 011057 208 AILGSTLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPEL-E-WDFRLPLVKSINVSGHKY-GLV 281 (494)
Q Consensus 208 ~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~-~~~~~~~~D~~~~~~hK~-l~~ 281 (494)
+++++||||.+.| +++|+++|+++ ++++++|++|+++.. ..... . ..+......++..+++|. +++
T Consensus 197 i~~p~nptG~~~~~~~l~~i~~~~~~~------~~~~i~Deay~~~~~--~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~ 268 (427)
T 3dyd_A 197 VNNPSNPCGSVFSKRHLQKILAVAARQ------CVPILADEIYGDMVF--SDCKYEPLATLSTDVPILSCGGLAKRWLVP 268 (427)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHT------TCCEEEECTTTTCBC--SSCCCCCGGGGCSSCCEEEEEESTTTSSCG
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHC------CCEEEEEcCchhhcc--CCCcCccHHHhCCCCcEEEEeeccccCCCc
Confidence 9999999999999 99999999999 999999999987642 11111 0 111111223456699996 566
Q ss_pred CCceEEEEEeCCCCcc-cccccc-cCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHh
Q 011057 282 YAGIGWVIWRNKEDLP-EELIFH-INYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLE 359 (494)
Q Consensus 282 p~g~G~~~~~~~~~~~-~~~~~~-~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~ 359 (494)
+.++|+++++++.... ..+... ..+.. ...+.+.....++.++|+....+.++++.++..++++++.+.|+
T Consensus 269 G~riG~~~~~~~~~~~~~~i~~~l~~~~~-------~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~ 341 (427)
T 3dyd_A 269 GWRLGWILIHDRRDIFGNEIRDGLVKLSQ-------RILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALA 341 (427)
T ss_dssp GGCCEEEEEECSTTSSHHHHHHHHHHHHH-------HHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEecCcchhhHHHHHHHHHHHHh-------ccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7789999987642110 000000 00000 00222233444455555555567788889999999999999999
Q ss_pred hCCCeEEeecCCCccEEEEEecCC---CCCCHHHHHHHHH-hcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHH
Q 011057 360 KTGRFNIVSKDEGVPLVAFSLKDN---KRHDEFEVAELLR-RFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVL 435 (494)
Q Consensus 360 ~~~~~~~~~~~~~~~~v~f~~~~~---~~~~~~~l~~~L~-~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~ 435 (494)
+++++++..+. ...++.+.+... ...+..+++++|. ++|+.+...... ....++|+++. +++++++.+++
T Consensus 342 ~~~g~~~~~p~-~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~---~~~~~iRis~~--~~~e~i~~~l~ 415 (427)
T 3dyd_A 342 AIPGLRPVRPS-GAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCF---EYPNFIRVVIT--VPEVMMLEACS 415 (427)
T ss_dssp HSTTEEEECCS-BTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGG---TCTTEEEEESC--SCHHHHHHHHH
T ss_pred cCCCceecCCC-eeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCccc---CCCCeEEEEEC--CCHHHHHHHHH
Confidence 99778876553 445666666411 1246778898885 889987543322 12457999986 68899999999
Q ss_pred HHHHHHHHHh
Q 011057 436 DITKVLHELD 445 (494)
Q Consensus 436 ~l~~~~~~l~ 445 (494)
.|+++++++.
T Consensus 416 ~l~~~l~~~~ 425 (427)
T 3dyd_A 416 RIQEFCEQHY 425 (427)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9998887764
No 54
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.96 E-value=3.1e-27 Score=238.42 Aligned_cols=347 Identities=14% Similarity=0.066 Sum_probs=242.6
Q ss_pred CCCCcccccccC-CChHHHHHHHHHHhccc----CCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHH
Q 011057 55 NPRLNLASFVTT-WMEPECDKLMMAAINKN----YVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEA 129 (494)
Q Consensus 55 ~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~----~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a 129 (494)
+..++|+.+.+. +++|.+.+++.+.+... ...|...++..++++++.+++++.+|.+.+ ...+++|+|+++|
T Consensus 35 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~---~~~i~~~~g~~~a 111 (398)
T 3ele_A 35 ENVYDFSIGNPSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFN---ADNLYMTMGAAAS 111 (398)
T ss_dssp GGCEECCSCCCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCC---GGGEEEESSHHHH
T ss_pred CCeEEeecCCCCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCC---hHHEEEccCHHHH
Confidence 344566665544 35678888888887653 234555567789999999999999996542 2468999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCC-CeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEE
Q 011057 130 IMLAGLAFKRKWQNKRKAEGKPFDK-PNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAA 208 (494)
Q Consensus 130 ~~~a~~a~~~~~~~~~~~~g~~~~~-~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~ 208 (494)
+.+++.++.. .+ ++|+++.++|..+...++..|++++.+|++++++.+|+++|++++++++++|++
T Consensus 112 l~~~~~~l~~-------------~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~ 178 (398)
T 3ele_A 112 LSICFRALTS-------------DAYDEFITIAPYFPEYKVFVNAAGARLVEVPADTEHFQIDFDALEERINAHTRGVII 178 (398)
T ss_dssp HHHHHHHHCC-------------STTCEEEEESSCCTHHHHHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEEE
T ss_pred HHHHHHHHcC-------------CCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCcCCCEEEE
Confidence 9988887732 13 589999999999999999999999999998655789999999999989999999
Q ss_pred eeCCCCcccccC---HHHHHHHHHH------hhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccC
Q 011057 209 ILGSTLNGEFED---VKLLNDLLAE------KNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYG 279 (494)
Q Consensus 209 ~~~~~~tG~~~~---l~~I~~la~~------~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l 279 (494)
++++||||.+.| +++|+++|++ + ++++++|++|+.+.. ..............+++..+++|++
T Consensus 179 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~------~~~li~De~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~ 250 (398)
T 3ele_A 179 NSPNNPSGTVYSEETIKKLSDLLEKKSKEIGR------PIFIIADEPYREIVY--DGIKVPFVTKYYDNTLVCYSYSKSL 250 (398)
T ss_dssp CSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTS------CCEEEEECTTTTCBC--TTCCCCCGGGTCSSEEEEEESTTTS
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhhhhccCC------CeEEEEecccccccc--CCCCcCChHhhcCCeEEEEehhhcC
Confidence 999999999987 6777789998 7 999999999987542 1111111222335678888999998
Q ss_pred C-cCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHH
Q 011057 280 L-VYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGL 358 (494)
Q Consensus 280 ~-~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L 358 (494)
. ++.++|++++++.......+.......... .++. ....+++.++...+... ...++..++++++.+.|
T Consensus 251 ~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~l~~~L 320 (398)
T 3ele_A 251 SLPGERIGYVLVPDEVYDKAELYAAVCGAGRA------LGYV-CAPSLFQKMIVKCQGAT---GDINAYKENRDLLYEGL 320 (398)
T ss_dssp SCTTTCCEEEECCTTSTTHHHHHHHHHHHHHH------TTCC-CSCHHHHHHHTTCTTCC---CCHHHHHHHHHHHHHHH
T ss_pred CCccceeEEEEEcchhhhHHHHHHHHHHHhhh------cccc-CCCHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHH
Confidence 6 778899998765421100000000000000 0000 11223333333333222 13566778888999999
Q ss_pred hhCCCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHH
Q 011057 359 EKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDIT 438 (494)
Q Consensus 359 ~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~ 438 (494)
++++ +++..+. ...++.+.++. .+..++.+.|.++|+.+.....+. ...++|++++ +++++++++++.|+
T Consensus 321 ~~~g-~~~~~~~-~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~g~~~~---~~~~iRis~~--~~~e~i~~~l~~l~ 390 (398)
T 3ele_A 321 TRIG-YHCFKPD-GAFYMFVKALE---DDSNAFCEKAKEEDVLIVAADGFG---CPGWVRISYC--VDREMIKHSMPAFE 390 (398)
T ss_dssp HHHT-CCEECCS-BSSEEEEECSS---SCHHHHHHHHHTTTEECEESGGGT---CTTEEEEECC--SCHHHHHHHHHHHH
T ss_pred HHcC-CeecCCC-eeEEEEEEcCC---CCHHHHHHHHHHCCEEEeCccccC---CCCeEEEEec--CCHHHHHHHHHHHH
Confidence 9885 7776543 23336666642 367899999999999885533321 1357999986 68999999999999
Q ss_pred HHHHHHh
Q 011057 439 KVLHELD 445 (494)
Q Consensus 439 ~~~~~l~ 445 (494)
+++++++
T Consensus 391 ~~l~~~~ 397 (398)
T 3ele_A 391 KIYKKYN 397 (398)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988764
No 55
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.96 E-value=2.2e-26 Score=234.73 Aligned_cols=354 Identities=15% Similarity=0.130 Sum_probs=238.0
Q ss_pred CCChHHHHHHHHHHhcccCCCC-CCC---hhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHH
Q 011057 66 TWMEPECDKLMMAAINKNYVDM-DEY---PVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKW 141 (494)
Q Consensus 66 ~~~~p~~~~~~~~~~~~~~~~~-~~~---~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~ 141 (494)
++++|.+.+++.+.+.....++ ..+ +...++..++++++++++|.++ ..+++|+|+++|+.+++.++.+.+
T Consensus 28 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~-----~~v~~~~g~t~a~~~~~~~~~~~~ 102 (432)
T 3a9z_A 28 TPLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKP-----QDIIFTSGGTESNNLVIHSTVRCF 102 (432)
T ss_dssp CCCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCG-----GGEEEESCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCc-----CeEEEeCChHHHHHHHHHHHHhhh
Confidence 3567888888888776532221 122 2456677889999999999864 358999999999999988875432
Q ss_pred HHHHHhcCCCC--------CCCeEEeCCCcchHHHHHH----HHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEe
Q 011057 142 QNKRKAEGKPF--------DKPNIVTGANVQVCWEKFA----RYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAI 209 (494)
Q Consensus 142 ~~~~~~~g~~~--------~~~~vi~~~~~h~s~~~~~----~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~ 209 (494)
.......|..+ ....|+++..+|.+..... +..|++++.++++++++.+|+++|++++++++++|+++
T Consensus 103 ~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~ 182 (432)
T 3a9z_A 103 HEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIM 182 (432)
T ss_dssp HHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEECC
T ss_pred hhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhccCCceEEEEE
Confidence 21000012100 0147888889998875543 44699999999875346899999999999889999999
Q ss_pred eCCCCcccccCHHHHHHHHHHhhcccCCC----------ceEEEecccccccccccCCcccccccCCCceEEEEcCcccC
Q 011057 210 LGSTLNGEFEDVKLLNDLLAEKNKETGWD----------TPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYG 279 (494)
Q Consensus 210 ~~~~~tG~~~~l~~I~~la~~~~~~~~~~----------~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l 279 (494)
+++|+||.+.|+++|.++|+++ + +++|+|++|+.+..++ ++...++|++++++|||+
T Consensus 183 ~~~nptG~~~~~~~i~~l~~~~------~~~~~~~~~~~~~livDea~~~~~~~~-------~~~~~~~d~~~~s~~K~~ 249 (432)
T 3a9z_A 183 LANNETGVIMPISEISRRIKAL------NQIRAASGLPRVLVHTDAAQALGKRRV-------DVEDLGVDFLTIVGHKFY 249 (432)
T ss_dssp SBCTTTCBBCCHHHHHHHHHHH------HHHHHHHTCCCCEEEEECTTTTTTSCC-------CHHHHCCSEEEEEGGGTT
T ss_pred CcccCcccccCHHHHHHHHHhc------CcccccccCCceEEEEEchhhhCCccc-------ChhhcCCCEEEEehhHhc
Confidence 9999999999999999999999 7 9999999998754221 111125789999999986
Q ss_pred CcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHh
Q 011057 280 LVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLE 359 (494)
Q Consensus 280 ~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~ 359 (494)
+|. +|+++++++... .. ..+.+.++........++.+.....++.++++.+. +++++..++..++++++.+.|+
T Consensus 250 -g~~-~G~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~-~~~~~~~~~~~~~~~~l~~~L~ 323 (432)
T 3a9z_A 250 -GPR-IGALYVRGVGKL-TP--LYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVS-ENCETYEAHMRDIRDYLEERLE 323 (432)
T ss_dssp -CCS-CEEEEETTBTTT-BC--CCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCc-ceEEEEcccccc-CC--cCceeecCCccccccCCCcCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHH
Confidence 455 999998764211 11 11122221110001124444455556666676553 4778889999999999999999
Q ss_pred hCCCeEEe--ec----CCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccc--cCC------------CC---CCceE
Q 011057 360 KTGRFNIV--SK----DEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYT--MPA------------DA---QHITV 416 (494)
Q Consensus 360 ~~~~~~~~--~~----~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~--~~~------------~~---~~~~~ 416 (494)
+++++++. .+ .....++.|.+... +.+..++.+.|. |+.+.... .+. .. ....+
T Consensus 324 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~--~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 400 (432)
T 3a9z_A 324 AEFGKRIHLNSRFPGVERLPNTCNFSIQGS-QLRGYMVLAQCQ--TLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNA 400 (432)
T ss_dssp HHHGGGEEESSCCTTCCBCTTEEEEEECST-TCCHHHHHHHCS--SEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTE
T ss_pred hccCCcEEEeCCCCcccCCCCEEEEEeCCC-CCcHHHHHHHhc--CeEEeccccccCCCCCCccHHHHhcCCCccccCce
Confidence 86445443 22 11234777887531 235566766653 44432110 000 00 01358
Q ss_pred EEEEeccCCChHHHHHHHHHHHHHHHHHhc
Q 011057 417 LRVVIREDFSRTLAERLVLDITKVLHELDS 446 (494)
Q Consensus 417 lRvs~~~~~t~~~id~~i~~l~~~~~~l~~ 446 (494)
+|++++..+|.++++++++.|+++++++++
T Consensus 401 iRis~~~~~t~eei~~~~~~l~~~~~~~~~ 430 (432)
T 3a9z_A 401 VRLSVGRSTTRAEVDLIVQDLKQAVNQLEG 430 (432)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999888999999999999999877653
No 56
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.96 E-value=7.9e-28 Score=241.34 Aligned_cols=339 Identities=13% Similarity=0.059 Sum_probs=233.8
Q ss_pred ChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 011057 68 MEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA 147 (494)
Q Consensus 68 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~ 147 (494)
.+|.+.+++.+.+.. + .++.......+++++++++++..... +...+++|+||++|+.+++.++...+
T Consensus 16 ~~~~v~~a~~~~~~~----~-~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~v~~~~g~t~al~~~~~~~~~~~------ 83 (385)
T 2bkw_A 16 LSGAVQKALDVPSLG----H-TSPEFVSIFQRVLKNTRAVFKSAAAS-KSQPFVLAGSGTLGWDIFASNFILSK------ 83 (385)
T ss_dssp CCHHHHHTTSCCCCC----T-TSHHHHHHHHHHHHHHHHHTTCCGGG-TCEEEEEESCTTHHHHHHHHHHSCTT------
T ss_pred chHHHHHHHhccccc----c-CCHHHHHHHHHHHHHHHHHhCCCCCC-CCceEEEcCchHHHHHHHHHHHhccC------
Confidence 356666665443321 1 24555555667888888888764210 11358999999999999888773100
Q ss_pred cCCCCCCCeEEeCCC--cchHHHHHHHHcCCeeEEEec-cCCccccCHHHHHHhhhh-CCeEEEEeeCCCCcccccCHHH
Q 011057 148 EGKPFDKPNIVTGAN--VQVCWEKFARYFEVELKEVKL-SEGYYVMDPVKAVEMVDE-NTICVAAILGSTLNGEFEDVKL 223 (494)
Q Consensus 148 ~g~~~~~~~vi~~~~--~h~s~~~~~~~~G~~v~~v~~-~~~~~~~d~~~L~~~i~~-~t~~vv~~~~~~~tG~~~~l~~ 223 (494)
..+++|+++.. .|.++...++..|++++.+++ +++ +.+|+++|++++++ ++++|++++++|+||.+.|+++
T Consensus 84 ----~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~ 158 (385)
T 2bkw_A 84 ----APNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIG-ESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKA 158 (385)
T ss_dssp ----CSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTT-SCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHH
T ss_pred ----CCCCeEEEEcCCcchHHHHHHHHHcCCceEEEecCCCC-CCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCHHH
Confidence 01256766533 344445677889999999998 654 78999999999988 7899999999999999999999
Q ss_pred HHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccc--
Q 011057 224 LNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELI-- 301 (494)
Q Consensus 224 I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~-- 301 (494)
|.++|+++++ |+++|+|++|+.+..++ ++...++|++++++|||+++|.|+|+++++++ .+...+.
T Consensus 159 i~~~~~~~~~----~~~li~D~a~~~~~~~~-------~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~-~~~~~l~~~ 226 (385)
T 2bkw_A 159 ISQAIKQTSP----ETFFVVDAVCSIGCEEF-------EFDEWGVDFALTASQKAIGAPAGLSISLCSSR-FMDYALNDS 226 (385)
T ss_dssp HHHHHHHHCT----TSEEEEECTTTTTTSCC-------CTTTTTCSEEEEESSSTTCCCSCEEEEEECHH-HHHHHTCHH
T ss_pred HHHHHHhhCC----CCEEEEECccccCCccc-------cccccCceEEEecCccccccCCcceEEEEcHH-HHHHHHhhc
Confidence 9999999822 79999999998654322 22223689999999999988899999988653 2210110
Q ss_pred ---cccCCCCC-----------CCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHH-hhCCCeEE
Q 011057 302 ---FHINYLGA-----------DQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGL-EKTGRFNI 366 (494)
Q Consensus 302 ---~~~~y~~~-----------~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L-~~~~~~~~ 366 (494)
....|... ........++.+....+++.++++.+...+++++.++..++++++.+.| +++ ++++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~ 305 (385)
T 2bkw_A 227 KNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL-QLTS 305 (385)
T ss_dssp HHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT-CCEE
T ss_pred cCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc-Ccee
Confidence 00011100 0000000134445556667777877766678888999999999999999 888 5887
Q ss_pred eecC----CCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEE-ecc---CCChHHHHHHHHHHH
Q 011057 367 VSKD----EGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVV-IRE---DFSRTLAERLVLDIT 438 (494)
Q Consensus 367 ~~~~----~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs-~~~---~~t~~~id~~i~~l~ 438 (494)
..+. ...+++.|.+++ ..++.++|.++|+.+.....+ ..+..++|++ +.. .++.++++++++.|+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~gi~v~~g~~~--~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~ 378 (385)
T 2bkw_A 306 VSRYPSNMSAHGLTAVYVAD-----PPDVIAFLKSHGVVIAGGIHK--DIGPKYIRIGHMGVTACNKNLPYMKNCFDLIK 378 (385)
T ss_dssp SSCSSSTTBCSSCEEEECSC-----HHHHHHHHHHTTEECBCCCCT--TTGGGEEEECCCGGGTSSTTCTHHHHHHHHHH
T ss_pred cccCcccccCCceEEEecCC-----HHHHHHHHHHCCeEEeCCCCc--ccCCCEEEEEccccccccCCHHHHHHHHHHHH
Confidence 7532 135778888732 678999999999987543221 1235689999 653 468899999999998
Q ss_pred HHHHH
Q 011057 439 KVLHE 443 (494)
Q Consensus 439 ~~~~~ 443 (494)
+++++
T Consensus 379 ~~~~~ 383 (385)
T 2bkw_A 379 LALQR 383 (385)
T ss_dssp HHTTC
T ss_pred HHHHh
Confidence 87643
No 57
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.96 E-value=9.1e-28 Score=242.92 Aligned_cols=347 Identities=12% Similarity=0.001 Sum_probs=246.3
Q ss_pred CCcccccccC--CChHHHHHHHHHHhcccC-CCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHH
Q 011057 57 RLNLASFVTT--WMEPECDKLMMAAINKNY-VDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLA 133 (494)
Q Consensus 57 ~~~~~~~~~~--~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a 133 (494)
.++|+++.+. +++|.+.+++.+++.... ..|...++..++++++++++++++|.+.+. ...+++|+||++|+..+
T Consensus 41 ~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~--~~~i~~~~g~~~a~~~~ 118 (407)
T 3nra_A 41 PVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDA--RDGLIITPGTQGALFLA 118 (407)
T ss_dssp CEETTSCCTTTSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCT--TTSEEEESHHHHHHHHH
T ss_pred eeeecCcCCCCCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCC--CCcEEEeCCcHHHHHHH
Confidence 4566654433 456778888888876532 234555678899999999999999985311 02489999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEecc-----CCccccCHHHHHHhhhhCCeEEEE
Q 011057 134 GLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLS-----EGYYVMDPVKAVEMVDENTICVAA 208 (494)
Q Consensus 134 ~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~-----~~~~~~d~~~L~~~i~~~t~~vv~ 208 (494)
+.++.. .+++|+++.++|.++...++..|++++.++++ ++++.+|+++|++++.+++++|++
T Consensus 119 ~~~l~~-------------~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~ 185 (407)
T 3nra_A 119 VAATVA-------------RGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLF 185 (407)
T ss_dssp HHTTCC-------------TTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEE
T ss_pred HHHhCC-------------CCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEE
Confidence 776622 13689999999999999999999999999983 234789999999999989999999
Q ss_pred eeCCCCcccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCccc--ccc--cCCCceEEEEcCcccCC-
Q 011057 209 ILGSTLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELE--WDF--RLPLVKSINVSGHKYGL- 280 (494)
Q Consensus 209 ~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~--~~~~~D~~~~~~hK~l~- 280 (494)
++++||||.+.| +++|+++|+++ ++++++|++|+.+.. ...... ..+ .....+++..+++|++.
T Consensus 186 ~~p~nptG~~~~~~~l~~i~~~~~~~------~~~li~Dea~~~~~~--~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~ 257 (407)
T 3nra_A 186 SNPNNPAGVVYSAEEIGQIAALAARY------GATVIADQLYSRLRY--AGASYTHLRAEAAVDAENVVTIMGPSKTESL 257 (407)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTSBC--TTCCCCCGGGCTTSCGGGEEEEECSSSTTCC
T ss_pred cCCCCCCCcccCHHHHHHHHHHHHHc------CCEEEEEcccccccc--CCCCCCChhhcCcccCCcEEEEeCcccccCC
Confidence 999999999988 99999999999 999999999987542 111100 011 11346688889999986
Q ss_pred cCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhc--HhHHHHHHHHHHHHHHHHHHHH
Q 011057 281 VYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG--FEGYRNVMENCHENAMVLKEGL 358 (494)
Q Consensus 281 ~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~--~~g~~~~~~~~~~~a~~l~~~L 358 (494)
++.++|+++.+. ..+ ..+....... ..+.+ .+++.++...+. .+.+++..++..++++++.+.|
T Consensus 258 ~G~r~G~~~~~~-~~~-~~l~~~~~~~---------~~~~~---~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 323 (407)
T 3nra_A 258 SGYRLGVAFGSR-AII-ARMEKLQAIV---------SLRAA---GYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVL 323 (407)
T ss_dssp GGGCCEEEEECH-HHH-HHHHHHHHHH---------TSSSC---HHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeeEEEEEcCH-HHH-HHHHHHHhhh---------ccCCC---hHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 667789887643 222 1111110000 01111 223333344442 3556788888899999999999
Q ss_pred hhCCCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHh-cCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHH
Q 011057 359 EKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRR-FGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDI 437 (494)
Q Consensus 359 ~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~-~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l 437 (494)
++++++++..+. ...++.+.+.. .+.+..++.++|.+ +|+.+.....+. ..+..++|++++. ++++++++++.|
T Consensus 324 ~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g~~~~-~~~~~~iRis~~~--~~~~i~~~~~~l 398 (407)
T 3nra_A 324 RGCEGVFARTPQ-AGSYLFPRLPK-LAVAPAEFVKILRLQAGVVVTPGTEFS-PHTADSVRLNFSQ--DHEAAVAAARRI 398 (407)
T ss_dssp HTSTTCBCCCCS-BSSEECCBCCC-BSSCHHHHHHHHHHHHCEECEEGGGTC-TTCTTBEEEECCS--CHHHHHHHHHHH
T ss_pred hcCCCceeccCC-eeEEEEEeCCC-CCCCHHHHHHHHHHhCCEEEeCchhhC-CCCCCEEEEEeCC--CHHHHHHHHHHH
Confidence 999778776543 33455555532 24578899999975 599986543332 2345679999974 899999999999
Q ss_pred HHHHHHHh
Q 011057 438 TKVLHELD 445 (494)
Q Consensus 438 ~~~~~~l~ 445 (494)
++++++++
T Consensus 399 ~~~~~~~~ 406 (407)
T 3nra_A 399 VTLVERYR 406 (407)
T ss_dssp HHHHHHHB
T ss_pred HHHHHHhh
Confidence 99888764
No 58
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.96 E-value=6.3e-28 Score=238.38 Aligned_cols=330 Identities=15% Similarity=0.057 Sum_probs=234.2
Q ss_pred cCCChHHHHHHHHHHhcc---cCCC----CCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceee-ecChhHHHHHHHHH
Q 011057 65 TTWMEPECDKLMMAAINK---NYVD----MDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVG-TVGSSEAIMLAGLA 136 (494)
Q Consensus 65 ~~~~~p~~~~~~~~~~~~---~~~~----~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~-t~ggt~a~~~a~~a 136 (494)
|++.++.+.+++...+.+ |+.+ ...++.+.++.+++++.+++++|.+.+ ..++| |+|||+++.+++..
T Consensus 13 pt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~----~~v~f~t~~~T~a~n~~~~~ 88 (361)
T 3m5u_A 13 PSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDD----YEVLFLQGGASLQFAMIPMN 88 (361)
T ss_dssp SCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTT----EEEEEESSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCC----ceEEEEcCcHHHHHHHHHHh
Confidence 445678899988887653 2221 112446678888999999999999641 34777 99999999988776
Q ss_pred HHHHHHHHHHhcCCCCCCC-eEEeCCCcchHHHHHHHHcCCeeEEEeccCCcc-ccCHHHHHHhhhhCCeEEEEeeCCCC
Q 011057 137 FKRKWQNKRKAEGKPFDKP-NIVTGANVQVCWEKFARYFEVELKEVKLSEGYY-VMDPVKAVEMVDENTICVAAILGSTL 214 (494)
Q Consensus 137 ~~~~~~~~~~~~g~~~~~~-~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~-~~d~~~L~~~i~~~t~~vv~~~~~~~ 214 (494)
+. + | .+. .|+.+..+|. +...++..|++++.++++++.. .++++. + |+++|++|.+++.+|.
T Consensus 89 ~~-~--------~---~~~~~i~~~~~~~~-~~~~a~~~G~~v~~~~~~~~g~~~~~~~~--~-l~~~t~lv~~~~~e~~ 152 (361)
T 3m5u_A 89 LA-L--------N---GVCEYANTGVWTKK-AIKEAQILGVNVKTVASSEESNFDHIPRV--E-FSDNADYAYICSNNTI 152 (361)
T ss_dssp HC-C--------S---SCEEEEECSHHHHH-HHHHHHHTTCCEEEEEECTTTTSCSCCCC--C-CCTTSSEEEEESEETT
T ss_pred cC-C--------C---CeEEEEeCCHHHHH-HHHHHHHcCCceEEEecccCcCCCcCChh--h-cCCCCCEEEEeCCCCC
Confidence 62 1 1 011 2344444554 4455677899999999987521 156665 4 8889999999999999
Q ss_pred cccccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCC
Q 011057 215 NGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKE 294 (494)
Q Consensus 215 tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~ 294 (494)
+|.+.|. | ++ + ++++|||++++.+..|+ |+ ..+|++++++|||+ +|.|+|+++++++.
T Consensus 153 tG~~~~~--i---~~-~------~~~~~vD~~q~~g~~~i-------d~--~~~d~~~~s~~K~~-gp~G~g~l~~~~~~ 210 (361)
T 3m5u_A 153 YGTQYQN--Y---PK-T------KTPLIVDASSDFFSRKV-------DF--SNIALFYGGVQKNA-GISGLSCIFIRKDM 210 (361)
T ss_dssp TTEECSS--C---CC-C------SSCEEEECGGGTTSSCC-------CC--TTEEEEEEETTTTS-SCTTCEEEEEEHHH
T ss_pred cceeCCc--c---cc-c------CCEEEEEcccccCCCCC-------Cc--ccCCEEEEechhcc-CCCccEEEEEcHHH
Confidence 9998652 3 32 5 89999999999876644 33 35899999999999 59999999998642
Q ss_pred Ccccccc-cccCCCCCC--CCCcccccCcchHHHHHHHHHHHHhcHh-HHHHHHHHHHHHHHHHHHHHhhCCCe-EEeec
Q 011057 295 DLPEELI-FHINYLGAD--QPTFTLNFSKGSSQVIAQYYQLIRLGFE-GYRNVMENCHENAMVLKEGLEKTGRF-NIVSK 369 (494)
Q Consensus 295 ~~~~~~~-~~~~y~~~~--~~~~~~~~s~~~~~~~a~~~al~~l~~~-g~~~~~~~~~~~a~~l~~~L~~~~~~-~~~~~ 369 (494)
. ....+ ..+.++... .......+|++...++++.++++.+.++ |++++.++..+++++++++|++++++ ++..+
T Consensus 211 ~-~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~ 289 (361)
T 3m5u_A 211 L-ERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHAD 289 (361)
T ss_dssp H-HHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSC
T ss_pred H-hhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCC
Confidence 1 11101 112222100 0011123678888889999999999888 89999999999999999999999876 55433
Q ss_pred CC--CccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHH
Q 011057 370 DE--GVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHE 443 (494)
Q Consensus 370 ~~--~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~ 443 (494)
+. ...+++|.+++..+++ .++.+.|.++||.++.... ....+|+|++.++|.+|||+|++.|+++.++
T Consensus 290 ~~~rs~~ivsf~~~~~~~~~-~~~~~~L~~~gI~~~~g~~-----~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 290 KKDRSLMNVSFNIAKNKDLE-PLFVKEAEEAGMIGLKGHR-----ILGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp GGGBCSSEEEEEESSCTTHH-HHHHHHHHHTTEECCBCCT-----TTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCeEEEEECCCchhhh-HHHHHHHHHCCCEEecCCC-----ccCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 21 3458999986412334 4788999999998643211 1134999999999999999999999988764
No 59
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.96 E-value=9.9e-27 Score=233.90 Aligned_cols=342 Identities=12% Similarity=0.055 Sum_probs=241.5
Q ss_pred CCCCcccccccC-CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHH
Q 011057 55 NPRLNLASFVTT-WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLA 133 (494)
Q Consensus 55 ~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a 133 (494)
...++|+...+. +++|.+.+++.+.+......|.. +..++++++++++++++|.+.+ ...+++|+|+++|+.++
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~--~~~~~~~~l~~~l~~~~g~~~~---~~~v~~~~g~~~a~~~~ 106 (391)
T 4dq6_A 32 NDLLPMWVADMDFKAAPCIIDSLKNRLEQEIYGYTT--RPDSYNESIVNWLYRRHNWKIK---SEWLIYSPGVIPAISLL 106 (391)
T ss_dssp SCSEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCBC--CCHHHHHHHHHHHHHHHCCCCC---GGGEEEESCHHHHHHHH
T ss_pred CCceeccccCCCCCCCHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHHHHHHhCCCCc---HHHeEEcCChHHHHHHH
Confidence 344455554443 34688999999888764444433 4578889999999999995431 24689999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEecc---CCccccCHHHHHHhhhhCCeEEEEee
Q 011057 134 GLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLS---EGYYVMDPVKAVEMVDENTICVAAIL 210 (494)
Q Consensus 134 ~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~---~~~~~~d~~~L~~~i~~~t~~vv~~~ 210 (494)
+.++..+ +++|+++.++|..+...++..|++++.++++ ++++.+|+++|++++++ +++|++++
T Consensus 107 ~~~~~~~-------------gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~ 172 (391)
T 4dq6_A 107 INELTKA-------------NDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD-VKLFILCN 172 (391)
T ss_dssp HHHHSCT-------------TCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT-EEEEEEES
T ss_pred HHHhCCC-------------CCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc-CCEEEEEC
Confidence 8877321 2689999999999999999999999999987 23467999999999988 89999999
Q ss_pred CCCCcccc---cCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCccccccc-C----CCceEEEEcCcccCC-c
Q 011057 211 GSTLNGEF---EDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFR-L----PLVKSINVSGHKYGL-V 281 (494)
Q Consensus 211 ~~~~tG~~---~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~----~~~D~~~~~~hK~l~-~ 281 (494)
++||||.+ +++++|+++|+++ |+++++|++|+.+.. ... ....+. . ....++..+++|++. +
T Consensus 173 p~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--~g~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 243 (391)
T 4dq6_A 173 PHNPVGRVWTKDELKKLGDICLKH------NVKIISDEIHSDIIL--KKH-KHIPMASISKEFEKNTITCMAPTKTFNIA 243 (391)
T ss_dssp SBTTTTBCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBC--TTC-CCCCGGGSCHHHHHTEEEEECSHHHHTCG
T ss_pred CCCCCCcCcCHHHHHHHHHHHHHc------CCEEEeecccccccc--CCC-CccCHHHcCccccCcEEEEEechhhccCc
Confidence 99999999 7789999999999 999999999987542 111 001111 1 123477889999984 6
Q ss_pred CCceEEEEEeCCCCcccccccc-cCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhh
Q 011057 282 YAGIGWVIWRNKEDLPEELIFH-INYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 360 (494)
Q Consensus 282 p~g~G~~~~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~ 360 (494)
+.++|+++++++... ..+... ..+. .++.+.....++.+++.. ..+.+++..++..++++++.+.|++
T Consensus 244 G~r~G~~~~~~~~~~-~~~~~~~~~~~---------~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~ 312 (391)
T 4dq6_A 244 GLQSSYVVLPDEKDY-KLLDDAFTRID---------IKRNNCFSLVATEASYNN-GESWLESFLEYLESNIDFAIKYINE 312 (391)
T ss_dssp GGCCEEEECCSHHHH-HHHHHHHHHTT---------CCCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCHHHH-HHHHHHHHhhc---------CCCCCHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678899887653322 111111 1110 012223333444444543 3455678888899999999999998
Q ss_pred -CCCeEEeecCCCccEEE-EEecCCCCCCHHHHHHHHHhc-CceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHH
Q 011057 361 -TGRFNIVSKDEGVPLVA-FSLKDNKRHDEFEVAELLRRF-GWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDI 437 (494)
Q Consensus 361 -~~~~~~~~~~~~~~~v~-f~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l 437 (494)
++++++..+. .+++. +.+.. .+.+..++.++|.++ |+.+....... ..+..++|++++ +++++++++++.|
T Consensus 313 ~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g~~~~-~~~~~~iRis~~--~~~~~i~~~l~~l 386 (391)
T 4dq6_A 313 NMPKLKVRKPE--GTYLLWVDFSA-LGLSDEELESILVQKGKVALNQGNSFG-IGGSGYQRINLA--CPRSMLEEALIRI 386 (391)
T ss_dssp HCTTSEECCCS--BSSEEEEECGG-GCCCHHHHHHHHHHTTCEECEEGGGGC-TTCTTEEEEECC--SCHHHHHHHHHHH
T ss_pred hCCCCEecCCC--ccEEEEEEhhh-cCCCHHHHHHHHHHhCCEEeeCchhhC-CCCCCeEEEEEc--CCHHHHHHHHHHH
Confidence 6778877553 34444 66642 145788999999998 99885433221 123568999988 5888888888888
Q ss_pred HHHH
Q 011057 438 TKVL 441 (494)
Q Consensus 438 ~~~~ 441 (494)
++++
T Consensus 387 ~~~l 390 (391)
T 4dq6_A 387 KNAI 390 (391)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7765
No 60
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.96 E-value=8.9e-27 Score=236.37 Aligned_cols=332 Identities=16% Similarity=0.035 Sum_probs=232.8
Q ss_pred CChHHHHHHHHHHhcccCCCCCC--C-h-hhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHH
Q 011057 67 WMEPECDKLMMAAINKNYVDMDE--Y-P-VTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQ 142 (494)
Q Consensus 67 ~~~p~~~~~~~~~~~~~~~~~~~--~-~-~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~ 142 (494)
+.++.+.+++.+++......+.. + + +......++++++++++|.++ ..+++|+|+++++..++.++.. +.
T Consensus 39 ~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~-----~~v~~~~g~t~al~~al~~~~~-~~ 112 (416)
T 1qz9_A 39 ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARD-----GEVVVTDTTSINLFKVLSAALR-VQ 112 (416)
T ss_dssp CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCT-----TSEEECSCHHHHHHHHHHHHHH-HH
T ss_pred CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCc-----ccEEEeCChhHHHHHHHHhhcc-cc
Confidence 55667888888887653222211 1 1 233566678999999999864 2488899999999877777642 10
Q ss_pred HHHHhcCCCCCCCeEEeCCCcchHHHHH----HHHc--CCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcc
Q 011057 143 NKRKAEGKPFDKPNIVTGANVQVCWEKF----ARYF--EVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNG 216 (494)
Q Consensus 143 ~~~~~~g~~~~~~~vi~~~~~h~s~~~~----~~~~--G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG 216 (494)
.. ...| +..|+++..+|.++..+ ++.. |++++.+++ +++|++++++++++|++++++|+||
T Consensus 113 ~~-~~~g----d~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~--------~~~l~~~i~~~~~~v~~~~~~nptG 179 (416)
T 1qz9_A 113 AT-RSPE----RRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS--------PEELPQAIDQDTAVVMLTHVNYKTG 179 (416)
T ss_dssp HH-HSTT----CCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS--------GGGHHHHCSTTEEEEEEESBCTTTC
T ss_pred cc-cCCC----CcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc--------HHHHHHHhCCCceEEEEeccccCcc
Confidence 00 0011 12467777899875543 3334 998888874 6788888888899999999999999
Q ss_pred cccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCce-EEEEEeCCCC
Q 011057 217 EFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGI-GWVIWRNKED 295 (494)
Q Consensus 217 ~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~-G~~~~~~~~~ 295 (494)
.+.|+++|.++|+++ |+++|+|++|+.+..++ ++...++|++++++||++++++|+ |+++++++.
T Consensus 180 ~~~~l~~i~~l~~~~------~~~li~D~a~~~g~~~~-------~~~~~~~d~~~~s~~K~l~~g~~~~g~l~~~~~~- 245 (416)
T 1qz9_A 180 YMHDMQALTALSHEC------GALAIWDLAHSAGAVPV-------DLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQL- 245 (416)
T ss_dssp BBCCHHHHHHHHHHH------TCEEEEECTTTTTTSCC-------CHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTT-
T ss_pred cccCHHHHHHHHHHc------CCEEEEEccccccCcCC-------ChhhcCCCEEEecCcccCCCCCCCeEEEEECHHH-
Confidence 999999999999999 99999999998654321 111125899999999999888888 999987642
Q ss_pred cccccccccCCCCCCC-------------CCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhC-
Q 011057 296 LPEELIFHINYLGADQ-------------PTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKT- 361 (494)
Q Consensus 296 ~~~~~~~~~~y~~~~~-------------~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~- 361 (494)
..........|.+... ......++.+....+++.++++.+..++++++.++..++++++.+.|+++
T Consensus 246 ~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 325 (416)
T 1qz9_A 246 CDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRC 325 (416)
T ss_dssp TTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2111111111111000 00011234555566677788887776778889999999999999999986
Q ss_pred C--CeEEeecCC---CccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEecc-CCChHHHHHHHH
Q 011057 362 G--RFNIVSKDE---GVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIRE-DFSRTLAERLVL 435 (494)
Q Consensus 362 ~--~~~~~~~~~---~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~-~~t~~~id~~i~ 435 (494)
+ ++++..+.. ..+++++.+. +..++.++|.++||.+.. .+..++|+++.. .+++++++++++
T Consensus 326 ~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~l~~~gi~~~~-------~~~~~lRis~~~~~~t~~~i~~~~~ 393 (416)
T 1qz9_A 326 AAHELTLVTPREHAKRGSHVSFEHP-----EGYAVIQALIDRGVIGDY-------REPRIMRFGFTPLYTTFTEVWDAVQ 393 (416)
T ss_dssp TTSCCEECSCSSGGGBCSEEEEECT-----THHHHHHHHHTTTEECEE-------ETTTEEEEECCTTTCCHHHHHHHHH
T ss_pred cCCCeEEeCCCCHHHcCCEEEEecC-----CHHHHHHHHHhCCcEecc-------CCCCeEEEeCcccCCCHHHHHHHHH
Confidence 4 588776531 3567777763 267899999999988531 134579999974 789999999999
Q ss_pred HHHHHHHH
Q 011057 436 DITKVLHE 443 (494)
Q Consensus 436 ~l~~~~~~ 443 (494)
.|++++++
T Consensus 394 ~l~~~~~~ 401 (416)
T 1qz9_A 394 ILGEILDR 401 (416)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99988765
No 61
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.96 E-value=4e-27 Score=237.81 Aligned_cols=342 Identities=16% Similarity=0.093 Sum_probs=238.0
Q ss_pred cCCCCCcccccccCC--ChHHHHHHHHHHhcccCCCCCCCh---hhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChh
Q 011057 53 DGNPRLNLASFVTTW--MEPECDKLMMAAINKNYVDMDEYP---VTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSS 127 (494)
Q Consensus 53 ~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~---~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt 127 (494)
+++.+++|.+..+.+ ++|.+.+++.+.++.....+..+. +......++++.+++++|.+. .+++++|+
T Consensus 43 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~-------~i~~~sGs 115 (401)
T 1fc4_A 43 DGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMED-------AILYSSCF 115 (401)
T ss_dssp TSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCSE-------EEEESCHH
T ss_pred CCccEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCCCc-------EEEeCChH
Confidence 344555555554333 468888888888765332222111 113556678888999999862 56677779
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhh------
Q 011057 128 EAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDE------ 201 (494)
Q Consensus 128 ~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~------ 201 (494)
+++..++.++.. .++.|+++.+.|.++..+++..|++++.++ .+|+++|++++++
T Consensus 116 ~a~~~~~~~~~~-------------~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~------~~d~~~l~~~l~~~~~~~~ 176 (401)
T 1fc4_A 116 DANGGLFETLLG-------------AEDAIISDALNHASIIDGVRLCKAKRYRYA------NNDMQELEARLKEAREAGA 176 (401)
T ss_dssp HHHHTTHHHHCC-------------TTCEEEEETTCCHHHHHHHHTSCSEEEEEC------TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcC-------------CCCEEEEcchhHHHHHHHHHHcCCceEEEC------CCCHHHHHHHHHHhhccCC
Confidence 999887776622 125899999999998888999999988886 2578899988875
Q ss_pred CCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEEEecccc-cccccccCCccccccc-CCCceEEEEcCcccC
Q 011057 202 NTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASG-GFIAPFLYPELEWDFR-LPLVKSINVSGHKYG 279 (494)
Q Consensus 202 ~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~-~~~~~~~~~~~~~~~~-~~~~D~~~~~~hK~l 279 (494)
++++|++++++|+||.+.|+++|.++|+++ ++++++|++|+ ++..+.. ......+. ..++|+++.++||++
T Consensus 177 ~~~~v~~~~~~nptG~~~~~~~i~~l~~~~------~~~li~De~~~~g~~~~~g-~~~~~~~~~~~~~di~~~s~sK~~ 249 (401)
T 1fc4_A 177 RHVLIATDGVFSMDGVIANLKGVCDLADKY------DALVMVDDSHAVGFVGENG-RGSHEYCDVMGRVDIITGTLGKAL 249 (401)
T ss_dssp SSEEEEEESEETTTTEECCHHHHHHHHHHT------TEEEEEECTTTTTTSSTTS-CCHHHHTTCTTCCSEEEEESSSTT
T ss_pred CceEEEEeCCcCCCCCCCCHHHHHHHHHHc------CCEEEEECcccccccCCCC-CccHHHcCCCcCCcEEEecchhhc
Confidence 789999999999999999999999999999 99999999997 4321100 00010011 125799999999999
Q ss_pred CcCCceEEEEEeCCCCccccccc-ccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHH
Q 011057 280 LVYAGIGWVIWRNKEDLPEELIF-HINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGL 358 (494)
Q Consensus 280 ~~p~g~G~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L 358 (494)
+++.| |++++++ ..+ +.+.. ...| .+.++.+.....++.++++.+.. .++..++..++++++.+.|
T Consensus 250 ~~~~g-G~~~~~~-~~~-~~l~~~~~~~--------~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L 316 (401)
T 1fc4_A 250 GGASG-GYTAARK-EVV-EWLRQRSRPY--------LFSNSLAPAIVAASIKVLEMVEA--GSELRDRLWANARQFREQM 316 (401)
T ss_dssp CSSSC-EEEEECH-HHH-HHHHHHCHHH--------HHSCCCCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHH
T ss_pred cCCCC-EEEEcCH-HHH-HHHHHhCcCc--------eeCCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHH
Confidence 66666 8887743 222 21111 1111 11123333444555555554422 3567888899999999999
Q ss_pred hhCCCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHH
Q 011057 359 EKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDIT 438 (494)
Q Consensus 359 ~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~ 438 (494)
++++ +++. ++ ..+++.+.++. ..+..++.++|.++|+.+.....+....+..++|++++..+++++++++++.|+
T Consensus 317 ~~~g-~~~~-~~-~~~~~~~~~~~--~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~ 391 (401)
T 1fc4_A 317 SAAG-FTLA-GA-DHAIIPVMLGD--AVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFT 391 (401)
T ss_dssp HHTT-CCBC-CS-SSSEEEEEEEC--HHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred HHcC-Cccc-CC-CCCEEEEEcCC--hHHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 9984 7766 32 56788888743 235678999999999998655444333345789999998889999999999999
Q ss_pred HHHHHHh
Q 011057 439 KVLHELD 445 (494)
Q Consensus 439 ~~~~~l~ 445 (494)
++++++.
T Consensus 392 ~~~~~~~ 398 (401)
T 1fc4_A 392 RIGKQLG 398 (401)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 9987654
No 62
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.96 E-value=8.5e-27 Score=234.44 Aligned_cols=347 Identities=12% Similarity=0.039 Sum_probs=241.4
Q ss_pred CCcccccccC-CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcc-eeeecChhHHHHHHH
Q 011057 57 RLNLASFVTT-WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAV-GVGTVGSSEAIMLAG 134 (494)
Q Consensus 57 ~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~-~~~t~ggt~a~~~a~ 134 (494)
.++|..+.+. ++++.+.+++.+.++.....|...++..++++.+.+++++.+|.+.+ ... +++|+||++|+.+++
T Consensus 28 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~---~~~~v~~~~g~~~a~~~~~ 104 (389)
T 1gd9_A 28 VISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEAD---PKTEIMVLLGANQAFLMGL 104 (389)
T ss_dssp CEECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCC---TTTSEEEESSTTHHHHHHH
T ss_pred eEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCC---CCCeEEEcCChHHHHHHHH
Confidence 3445554444 34678888888888654444555557889999988888888896431 135 889999999999887
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccC-CccccCHHHHHHhhhhCCeEEEEeeCCC
Q 011057 135 LAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSE-GYYVMDPVKAVEMVDENTICVAAILGST 213 (494)
Q Consensus 135 ~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~t~~vv~~~~~~ 213 (494)
.++.. .+++|+++.++|.++...++..|++++.+++++ +++.+|+++|++++++++++|++++++|
T Consensus 105 ~~~~~-------------~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n 171 (389)
T 1gd9_A 105 SAFLK-------------DGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCN 171 (389)
T ss_dssp TTTCC-------------TTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCT
T ss_pred HHhCC-------------CCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcCcCceEEEEECCCC
Confidence 76622 126899999999999999999999999999875 2367899999999988889999999999
Q ss_pred Cccccc---CHHHHHHHHHHhhcccCCCceEEEecccccccccccCC-ccc-ccc-cCCCceEEEEcCcccCC-cCCceE
Q 011057 214 LNGEFE---DVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYP-ELE-WDF-RLPLVKSINVSGHKYGL-VYAGIG 286 (494)
Q Consensus 214 ~tG~~~---~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~-~~~-~~~-~~~~~D~~~~~~hK~l~-~p~g~G 286 (494)
|||.+. ++++|+++|+++ |+++++|++|+.+.. ... ... ..+ +..+.|++..++||++. ++.++|
T Consensus 172 ptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 243 (389)
T 1gd9_A 172 PTGAVLTKKDLEEIADFVVEH------DLIVISDEVYEHFIY--DDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLG 243 (389)
T ss_dssp TTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBC--TTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCE
T ss_pred CCCcCCCHHHHHHHHHHHHHc------CCEEEEehhhhhccc--CCCCCCCHhhccCCCCCEEEEecChhhcCCcccceE
Confidence 999996 599999999999 999999999998643 111 000 111 12357899999999985 445579
Q ss_pred EEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHh--HHHHHHHHHHHHHHHHHHHHhhCCCe
Q 011057 287 WVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFE--GYRNVMENCHENAMVLKEGLEKTGRF 364 (494)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~--g~~~~~~~~~~~a~~l~~~L~~~~~~ 364 (494)
++++++ ..+ +.+.....+. .++.+.....++.++++. +.+ .+++..++..++++++.+.|+++ ++
T Consensus 244 ~~~~~~-~~~-~~l~~~~~~~---------~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~ 310 (389)
T 1gd9_A 244 FVAAPS-WII-ERMVKFQMYN---------ATCPVTFIQYAAAKALKD-ERSWKAVEEMRKEYDRRRKLVWKRLNEM-GL 310 (389)
T ss_dssp EEECCH-HHH-HHHHHHHTTT---------TCSCCHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred EEEECH-HHH-HHHHHHHhhh---------ccCCCHHHHHHHHHHHhC-CCcchHHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 988753 222 2211111110 012222233333333332 233 56778888899999999999998 47
Q ss_pred EEeecCCCccEEEEEecCCCCCCHHHHHHHHH-hcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHH
Q 011057 365 NIVSKDEGVPLVAFSLKDNKRHDEFEVAELLR-RFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHE 443 (494)
Q Consensus 365 ~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~-~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~ 443 (494)
++..+. ...++.+.+.. .+.+..++.++|. ++|+.+....... ..+..++|++++. ++++++++++.|++++++
T Consensus 311 ~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g~~~~-~~~~~~iRi~~~~--~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 311 PTVKPK-GAFYIFPRIRD-TGLTSKKFSELMLKEARVAVVPGSAFG-KAGEGYVRISYAT--AYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp CCCCCC-BTTEECCBCGG-GTCCHHHHHHHHHHHTCEECEEGGGGC-GGGTTBEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred eecCCC-eeeEEEEeccC-CCCCHHHHHHHHHHhCCEEEeCchhhC-CCCCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 765442 22344455532 1357789999998 8999885443221 1234579999874 888999999888888765
Q ss_pred Hh
Q 011057 444 LD 445 (494)
Q Consensus 444 l~ 445 (494)
.+
T Consensus 386 ~~ 387 (389)
T 1gd9_A 386 RK 387 (389)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 63
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.96 E-value=4.1e-27 Score=243.30 Aligned_cols=370 Identities=14% Similarity=0.042 Sum_probs=245.5
Q ss_pred HHHHHHHHhhhhcCCCCCcccccccCCChHHHHHHHHHHhcccCC-------CCCCChhhHHHHHHHHHHHHHHhCCCCC
Q 011057 41 AAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYV-------DMDEYPVTTELQNRCVNIIARLFNAPLE 113 (494)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-------~~~~~~~~~~le~~~~~~la~l~g~~~~ 113 (494)
+++..+.+..... ...++|.... .+.++.+.+++.+.+.+.+. .|...+...++|+.+++++++++|.+.+
T Consensus 31 ~~~~~~~~~~~~~-~~~i~L~a~e-~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~ 108 (483)
T 1rv3_A 31 EVYDIIKKESNRQ-RVGLELIASE-NFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQ 108 (483)
T ss_dssp HHHHHHHHHHHHH-HSSEECCTTC-CCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHHh-hcCeEEEcCC-CCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcc
Confidence 4555554443222 2234443332 24578888888887765321 1334456788999999999999999752
Q ss_pred CCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHH--------HHHHcCCeeEEEec--
Q 011057 114 DSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEK--------FARYFEVELKEVKL-- 183 (494)
Q Consensus 114 ~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~--------~~~~~G~~v~~v~~-- 183 (494)
.- ...+.+++|+ ++|..++.++..+ +++|+++++.|.++.. .+...|..++.+++
T Consensus 109 ~~-~~~V~~~sGs-~an~~~~~all~p-------------GD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~ 173 (483)
T 1rv3_A 109 CW-GVNVQPYSGS-PANFAVYTALVEP-------------HGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKV 173 (483)
T ss_dssp TE-EEECCCSSHH-HHHHHHHHHHTCT-------------TCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECB
T ss_pred cC-ceEEEECCcH-HHHHHHHHHhcCC-------------CCEEEEecCccCcCcchhhhhcccCcccccceEEEEECcc
Confidence 00 0124555554 8888777666321 3689999988865532 23344533555554
Q ss_pred cCCccccCHHHHHHhhh-hCCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCccccc
Q 011057 184 SEGYYVMDPVKAVEMVD-ENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWD 262 (494)
Q Consensus 184 ~~~~~~~d~~~L~~~i~-~~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~ 262 (494)
+++++.+|+++|++++. .+|++|++ ++++++ .+.|+++|.++|+++ |+++++|+||+.+..+... ....
T Consensus 174 ~~~~~~iD~d~le~~i~~~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~------g~~livD~ah~~g~~~~~~--~~~p 243 (483)
T 1rv3_A 174 NPDTGYIDYDRLEENARLFHPKLIIA-GTSCYS-RNLDYGRLRKIADEN------GAYLMADMAHISGLVVAGV--VPSP 243 (483)
T ss_dssp CTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSCC-SCCCHHHHHHHHHHT------TCEEEEECTTTHHHHHHTS--SCCG
T ss_pred ccCCCcCCHHHHHHHHhhcCCcEEEE-eCCcCC-CcCCHHHHHHHHHHc------CCEEEEEccchhcccccCC--CCCC
Confidence 64458999999999998 78999888 888877 888999999999999 9999999999865432111 1111
Q ss_pred ccCCCceEEEEcCcccCCcCCceEEEEEeCCCCccccc-ccccCC-----CCCCCCCcccccCcchHHHHHHHHHHHHhc
Q 011057 263 FRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEEL-IFHINY-----LGADQPTFTLNFSKGSSQVIAQYYQLIRLG 336 (494)
Q Consensus 263 ~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~-~~~~~y-----~~~~~~~~~~~~s~~~~~~~a~~~al~~l~ 336 (494)
..++|++++++||++.+|.| |+++++++....... .....| +... ......++.+...+.++.++++.+.
T Consensus 244 --~~~~div~~s~~K~l~Gprg-G~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~-~~~~~~g~~~~~~iaal~~Al~~~~ 319 (483)
T 1rv3_A 244 --FEHCHVVTTTTHKTLRGCRA-GMIFYRRGVRSVDPKTGKEILYNLESLINSA-VFPGLQGGPHNHAIAGVAVALKQAM 319 (483)
T ss_dssp --GGTCSEEEEESSGGGCCCSC-EEEEEECSBCC-------CCBCCHHHHHHHH-HTTTTCCSCCHHHHHHHHHHHHHHT
T ss_pred --CCCCcEEEecCcccCCCCCc-eEEEEcchhhhhccccCcchhhHHHHHhhhh-cCCcccCCccHHHHHHHHHHHHHHh
Confidence 12689999999999988877 999988752100000 000000 0000 0000124555566677778888777
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCC--CCCc
Q 011057 337 FEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPAD--AQHI 414 (494)
Q Consensus 337 ~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~--~~~~ 414 (494)
..+++++.++..++++++.+.|.++ +++++.+.....++.+.+.. .+++..++.+.|.+.||.+.....|.. ..+.
T Consensus 320 ~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~v~~~~-~g~~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~ 397 (483)
T 1rv3_A 320 TPEFKEYQRQVVANCRALSAALVEL-GYKIVTGGSDNHLILVDLRS-KGTDGGRAEKVLEACSIACNKNTCPGDKSALRP 397 (483)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEEGGG-GTCCHHHHHHHHHHTTEECEEECCSSCSCTTSC
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHhc-CCEeccCCCCCceEEEeccC-CCCCHHHHHHHHHhCCcEEecCCCCCCCcCCCC
Confidence 6788899999999999999999998 49987653223455556542 245788899999999998863222321 2245
Q ss_pred eEEEEEeccCCC----hHHHHHHHHHHHHHHHH
Q 011057 415 TVLRVVIREDFS----RTLAERLVLDITKVLHE 443 (494)
Q Consensus 415 ~~lRvs~~~~~t----~~~id~~i~~l~~~~~~ 443 (494)
..+|+++...+| ++|++++++.|+++++.
T Consensus 398 ~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 398 SGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp CEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 689999987666 89999999999998875
No 64
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.95 E-value=1.8e-26 Score=227.30 Aligned_cols=391 Identities=14% Similarity=0.014 Sum_probs=259.0
Q ss_pred hcCCCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCcccc-cc--cCCChHHHHHHHHHHhcccCC---C-CCCCh---hh-
Q 011057 25 NSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLAS-FV--TTWMEPECDKLMMAAINKNYV---D-MDEYP---VT- 93 (494)
Q Consensus 25 ~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~p~~~~~~~~~~~~~~~---~-~~~~~---~~- 93 (494)
..|..-.+|+.|.+...|.-++.++..++.+...+..+ +. .--..+-+.... --+...-+ + .+.-| +.
T Consensus 34 ~ll~~r~~P~~g~~d~~ie~~l~~la~mdsnn~~~~~g~GERE~Rv~s~lv~rrh-~~~~HGiGRSGd~~~~QPKAaGss 112 (501)
T 3hl2_A 34 LLLEKGKCPENGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRH-YRFIHGIGRSGDISAVQPKAAGSS 112 (501)
T ss_dssp HHHHHCCCCSSCCCHHHHHHHHHHHHTTBGGGCSSCCCCSSCCCCCSCHHHHHHT-TTCCSCBSCSSCTTCCCTTBHHHH
T ss_pred HHHHcCCCCccCCCHHHHHHHHHHHHhhccCCCcccCCcccchHHHHHHHHHhhc-cCcccCCCCccccccCCCCccchH
Confidence 44554589999999999988888888777654321111 00 001112222111 11111111 1 01112 22
Q ss_pred ---HHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHH
Q 011057 94 ---TELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKF 170 (494)
Q Consensus 94 ---~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~ 170 (494)
.-.+..+.+||+.+ |++.. ...++++|+|.+++..++++.++.. ...+.||++..+|.|+.++
T Consensus 113 ll~~ltn~l~ld~L~~~-G~~~~----~~~flVnGsTgg~lamilaa~r~~r---------pg~d~VIvpRn~HKSv~kA 178 (501)
T 3hl2_A 113 LLNKITNSLVLDIIKLA-GVHTV----ANCFVVPMATGMSLTLCFLTLRHKR---------PKAKYIIWPRIDQKSCFKS 178 (501)
T ss_dssp HHHHHHHHHHHHHHHHT-TCTTC----CEEEEESSCHHHHHHHHHHHHHHHC---------TTCCEEEEECCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-CCCCC----CcEEEECcHHHHHHHHHHHHcCccc---------CCCCEEEEecchHHHHHHH
Confidence 23345577888887 99862 3477888888777766666544310 0126899999999999999
Q ss_pred HHHcCCeeEEEec--cCCccccCHHHHHHhhhhC---CeEEEEeeCCCC-cccccCHHHHHHHHHHhhcccCCCceEEEe
Q 011057 171 ARYFEVELKEVKL--SEGYYVMDPVKAVEMVDEN---TICVAAILGSTL-NGEFEDVKLLNDLLAEKNKETGWDTPIHVD 244 (494)
Q Consensus 171 ~~~~G~~v~~v~~--~~~~~~~d~~~L~~~i~~~---t~~vv~~~~~~~-tG~~~~l~~I~~la~~~~~~~~~~~~l~vD 244 (494)
+.+.|+++++|+. +++...+|+++++++|++. ..+++++.+++. .|..+||++|+++||+| |+++|||
T Consensus 179 liL~Gl~Pv~V~p~~d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~------gIpllVD 252 (501)
T 3hl2_A 179 MITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANY------DIPHIVN 252 (501)
T ss_dssp HHHTTCEEEEECEEEETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHH------TCCEEEE
T ss_pred HHHcCCeEEEEeeeecccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHc------CCeEEEe
Confidence 9999999999866 2335789999999999864 344444444443 45779999999999999 9999999
Q ss_pred cccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHH
Q 011057 245 AASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQ 324 (494)
Q Consensus 245 ~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~ 324 (494)
+|||.... +........+....+|+++.|.||+++.|.|.+++++++++.+... ...|. |+++...
T Consensus 253 eAhGah~~-~~~~lp~sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~e~l~~~---~~~yP----------Gr~S~Sp 318 (501)
T 3hl2_A 253 NAYGVQSS-KCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEI---SKMYP----------GRASASP 318 (501)
T ss_dssp CTTCTTCH-HHHHHHHHHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCHHHHHHH---HHTSC----------SCBCSHH
T ss_pred Ccchhhhh-hhhhhHHHHHhcCCCcEEEecccccceeecCceEEEeCCHHHHHHH---HHhCC----------CCCCCcH
Confidence 99998642 2211111122222499999999999999999888877776444221 23343 5556688
Q ss_pred HHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCC---CeEEeecCCCccEEEEEecCCC---CCCHHHHHHHHHhc
Q 011057 325 VIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTG---RFNIVSKDEGVPLVAFSLKDNK---RHDEFEVAELLRRF 398 (494)
Q Consensus 325 ~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~---~~~~~~~~~~~~~v~f~~~~~~---~~~~~~l~~~L~~~ 398 (494)
.+.+|+++..+|.+||++.++++.+++++|+++|+++. +-+++..+...--+++.+.... +.+...+...|..+
T Consensus 319 sldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r 398 (501)
T 3hl2_A 319 SLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTR 398 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHHHHhc
Confidence 89999999999999999999999999999999999863 2456654422223455553321 12356788889888
Q ss_pred CceeeccccCC-----------------CCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHHhcCccc
Q 011057 399 GWIVPAYTMPA-----------------DAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDSLPSK 450 (494)
Q Consensus 399 Gi~v~~~~~~~-----------------~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~~~~~~ 450 (494)
++.-...+.+. ......++-++.....+++|+|.|++.|++++..+++...+
T Consensus 399 ~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~~~~~ 467 (501)
T 3hl2_A 399 QVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERSK 467 (501)
T ss_dssp TCCSCEEECTTCCEEETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC----
T ss_pred CCCcceeecCCCceEECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 76532221111 11224567777777889999999999999999998875443
No 65
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.95 E-value=6.1e-27 Score=237.24 Aligned_cols=325 Identities=12% Similarity=0.023 Sum_probs=232.8
Q ss_pred CChHHHHHHHHHHhcccCCCCC---CChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHH
Q 011057 67 WMEPECDKLMMAAINKNYVDMD---EYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQN 143 (494)
Q Consensus 67 ~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~ 143 (494)
+.+|.+.+++.+.++....... ...+..+...++++++++++|.+. .+++++|++|+..++.++..
T Consensus 73 ~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~-------~i~~~sGt~a~~~~l~~~~~---- 141 (409)
T 3kki_A 73 ANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDE-------CLLSQSGWNANVGLLQTICQ---- 141 (409)
T ss_dssp TTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHCC----
T ss_pred cCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCCe-------EEEecchHHHHHHHHHHhcC----
Confidence 3468899998888876322221 222334555667888999999864 56777888999888877632
Q ss_pred HHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhh-CCeEEEEeeCCCCcccccCHH
Q 011057 144 KRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDE-NTICVAAILGSTLNGEFEDVK 222 (494)
Q Consensus 144 ~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~t~~vv~~~~~~~tG~~~~l~ 222 (494)
.++.|+++.++|.++..+++..|++++.++. +|+++|++++.+ ++++|+++.++|+||.+.|++
T Consensus 142 ---------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~ 206 (409)
T 3kki_A 142 ---------PNTNVYIDFFAHMSLWEGARYANAQAHPFMH------NNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLA 206 (409)
T ss_dssp ---------TTCEEEEETTSCHHHHHHHHHTTCEEEEECT------TCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHH
T ss_pred ---------CCCEEEECCCcCHHHHHHHHHcCCeEEEecC------CCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHH
Confidence 1368999999999999999999999887763 689999999986 589999999999999999999
Q ss_pred HHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccC-CCceEEEEcCcccCCcCCceEEEEEeCCCCcccccc
Q 011057 223 LLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRL-PLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELI 301 (494)
Q Consensus 223 ~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~-~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~ 301 (494)
+|.++|+++ |+++++|++|+.+............++. ..+|++..+++|++.++ .|+++.++ ... ..+.
T Consensus 207 ~l~~la~~~------~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~--gg~v~~~~-~~~-~~~~ 276 (409)
T 3kki_A 207 ELVNISKEF------GCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYR--AGAIWCNN-EVN-RCVP 276 (409)
T ss_dssp HHHHHHHHH------TCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSS--CEEEEESS-SGG-GTHH
T ss_pred HHHHHHHHc------CCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCC--ceEEEECH-HHH-HHHH
Confidence 999999999 9999999999875432111111111111 35789999999998655 36666543 332 2111
Q ss_pred c-ccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccEEEEEe
Q 011057 302 F-HINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSL 380 (494)
Q Consensus 302 ~-~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~ 380 (494)
. ...+ .+.++.+.....++.++++.+... ++..++..++++++.+.|++++ +++.. ..+++.+.+
T Consensus 277 ~~~~~~--------~~~~~~~~~~~aa~~aal~~~~~~--~~~~~~~~~~~~~l~~~L~~~g-~~~~~---~~~~~~~~~ 342 (409)
T 3kki_A 277 FISYPA--------IFSSTLLPYEAAGLETTLEIIESA--DNRRQHLDRMARKLRIGLSQLG-LTIRS---ESQIIGLET 342 (409)
T ss_dssp HHCHHH--------HHSBCCCHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHTTT-CCCCC---SSSEEEEEE
T ss_pred HhCcCc--------cccCCCcHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHcC-CccCC---CCCEEEEEe
Confidence 1 1111 111223334445555666655433 5677788899999999999985 76652 457777777
Q ss_pred cCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHH
Q 011057 381 KDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHE 443 (494)
Q Consensus 381 ~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~ 443 (494)
.. ..+..++.++|.++|+.+.....|....+..++|+++...+++++++++++.|+++++.
T Consensus 343 ~~--~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 343 GD--ERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp ES--HHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CC--HHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence 43 22456799999999999876665555556789999999889999999999999988765
No 66
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.95 E-value=1.6e-26 Score=232.48 Aligned_cols=339 Identities=14% Similarity=0.032 Sum_probs=239.4
Q ss_pred cCCCCCcccccccC-CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHH
Q 011057 53 DGNPRLNLASFVTT-WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIM 131 (494)
Q Consensus 53 ~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~ 131 (494)
.++..++|..+.+. ++++.+.+++.+.+......|...++..++++.+.+++.+.+|.+.+ ...+++|+|+++|+.
T Consensus 39 ~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~---~~~v~~~~g~t~al~ 115 (389)
T 1o4s_A 39 KGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDIS---PDQVVVTNGAKQALF 115 (389)
T ss_dssp TTCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCC---GGGEEEESHHHHHHH
T ss_pred cCCCEEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC---HHHEEEecCHHHHHH
Confidence 34555556655544 34577889988888654444555557889999988888888887431 145899999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccC-CccccCHHHHHHhhhhCCeEEEEee
Q 011057 132 LAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSE-GYYVMDPVKAVEMVDENTICVAAIL 210 (494)
Q Consensus 132 ~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~t~~vv~~~ 210 (494)
+++.++.. .+++|+++.++|.++...++..|++++.+++++ +++.+|+++|++++++++++|++++
T Consensus 116 ~~~~~l~~-------------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~ 182 (389)
T 1o4s_A 116 NAFMALLD-------------PGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINS 182 (389)
T ss_dssp HHHHHHCC-------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEES
T ss_pred HHHHHhCC-------------CCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcC
Confidence 88887722 125899999999999999999999999999875 3468999999999988889999999
Q ss_pred CCCCcccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcc-ccccc-CCCceEEEEcCcccCC-cCCc
Q 011057 211 GSTLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPEL-EWDFR-LPLVKSINVSGHKYGL-VYAG 284 (494)
Q Consensus 211 ~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~-~~~~D~~~~~~hK~l~-~p~g 284 (494)
++||||.+.| +++|.++|+++ |+++++|++|+.+.. ..+.. ...+. ..+.|++..++||++. ++.+
T Consensus 183 p~nptG~~~~~~~l~~l~~~~~~~------~~~li~Dea~~~~~~--~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 254 (389)
T 1o4s_A 183 PNNPTGVVYRREFLEGLVRLAKKR------NFYIISDEVYDSLVY--TDEFTSILDVSEGFDRIVYINGFSKSHSMTGWR 254 (389)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTSBC--SSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHc------CCEEEEEcccccccc--CCCCCCHhhcCCCCCcEEEEeechhhcCCcccc
Confidence 9999999966 99999999999 999999999997643 11100 01111 2468999999999985 4445
Q ss_pred eEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCe
Q 011057 285 IGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRF 364 (494)
Q Consensus 285 ~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~ 364 (494)
+|+++++++ .. +.+....... ..+. +.+.+++++..+.. ++++..++..++++++.+.|+++ ++
T Consensus 255 ~G~l~~~~~-~~-~~l~~~~~~~---------~~~~---~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~l~~~L~~~-g~ 318 (389)
T 1o4s_A 255 VGYLISSEK-VA-TAVSKIQSHT---------TSCI---NTVAQYAALKALEV-DNSYMVQTFKERKNFVVERLKKM-GV 318 (389)
T ss_dssp CEEEECCHH-HH-HHHHHHHHHH---------TCSC---CHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred eEEEEeCHH-HH-HHHHHHhhhc---------ccCC---CHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 899987542 21 2111110000 0111 22334455555543 26778888899999999999998 47
Q ss_pred EEeecCCCccEEEEEecCCCCCCHHHHHHHHH-hcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHH
Q 011057 365 NIVSKDEGVPLVAFSLKDNKRHDEFEVAELLR-RFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVL 441 (494)
Q Consensus 365 ~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~-~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~ 441 (494)
++..+. ...++.+.++ .+..++.++|. ++|+.+........ ..++|++++. ++++++++++.|++++
T Consensus 319 ~~~~~~-~~~~~~~~~~----~~~~~l~~~l~~~~gi~v~~g~~f~~---~~~~Ris~~~--~~~~l~~~l~~l~~~l 386 (389)
T 1o4s_A 319 KFVEPE-GAFYLFFKVR----GDDVKFCERLLEEKKVALVPGSAFLK---PGFVRLSFAT--SIERLTEALDRIEDFL 386 (389)
T ss_dssp CCCCCS-BSSEEEEECS----SCHHHHHHHHHHHHCEECEEGGGGTC---TTEEEEECCS--CHHHHHHHHHHHHHHH
T ss_pred eeecCC-cceEEEEeCC----CCHHHHHHHHHHHCCEEEeCchhcCC---CCeEEEEEeC--CHHHHHHHHHHHHHHH
Confidence 765432 2334445553 36788999997 89998754332211 2379999883 7888888887777665
No 67
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.95 E-value=7e-27 Score=236.94 Aligned_cols=347 Identities=14% Similarity=0.079 Sum_probs=238.3
Q ss_pred CCcccccccC-CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCc-ceeeecChhHHHHHHH
Q 011057 57 RLNLASFVTT-WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETA-VGVGTVGSSEAIMLAG 134 (494)
Q Consensus 57 ~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~-~~~~t~ggt~a~~~a~ 134 (494)
.++|..+.+. +++|.+.+++.++++.....|...++..++++++.+++.+.+|.+.+ .. .+++|+|+++|+.+++
T Consensus 27 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~---~~~~v~~t~g~~~al~~~~ 103 (411)
T 2o0r_A 27 AVNLGQGFPDEDGPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYD---PETEVLVTVGATEAIAAAV 103 (411)
T ss_dssp CEESSCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCC---TTTSEEEEEHHHHHHHHHH
T ss_pred eeeccCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCC---CCceEEEeCCHHHHHHHHH
Confidence 3445554443 34678889998888653334555556789999999999998897532 12 5899999999999888
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCC--ccccCHHHHHHhhhhCCeEEEEeeCC
Q 011057 135 LAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEG--YYVMDPVKAVEMVDENTICVAAILGS 212 (494)
Q Consensus 135 ~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~--~~~~d~~~L~~~i~~~t~~vv~~~~~ 212 (494)
.++..+ +++|+++.++|.++...++..|++++.++++++ ++.+|+++|++++++++++|++++++
T Consensus 104 ~~~~~~-------------gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~~~ 170 (411)
T 2o0r_A 104 LGLVEP-------------GSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPH 170 (411)
T ss_dssp HHHCCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEESSC
T ss_pred HHhcCC-------------CCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhccCceEEEEeCCC
Confidence 877321 268999999999999999999999999998653 46799999999998888999999999
Q ss_pred CCcccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcc-c-cccc-CCCceEEEEcCcccCC-cCCce
Q 011057 213 TLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPEL-E-WDFR-LPLVKSINVSGHKYGL-VYAGI 285 (494)
Q Consensus 213 ~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~-~~~~-~~~~D~~~~~~hK~l~-~p~g~ 285 (494)
||||.+.| +++|.++|+++ |+++++|++|+.+.. ..... . ..+. ..+.|++..+++|++. ++.++
T Consensus 171 nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 242 (411)
T 2o0r_A 171 NPTGAVLSATELAAIAEIAVAA------NLVVITDEVYEHLVF--DHARHLPLAGFDGMAERTITISSAAKMFNCTGWKI 242 (411)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBC--TTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCE
T ss_pred CCCCCCCCHHHHHHHHHHHHHc------CCEEEEEcccccccc--CCCCCcChhhccCCCCCEEEEeechhhcCCccceE
Confidence 99999965 58999999999 999999999987642 11100 0 0111 1357999999999885 34458
Q ss_pred EEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeE
Q 011057 286 GWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFN 365 (494)
Q Consensus 286 G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~ 365 (494)
|++++++ ... +.+.....+.. ++.+.....++.++++.. .+.+++..++..++++++.+.|++++ ++
T Consensus 243 G~~~~~~-~~~-~~l~~~~~~~~---------~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g-~~ 309 (411)
T 2o0r_A 243 GWACGPA-ELI-AGVRAAKQYLS---------YVGGAPFQPAVALALDTE-DAWVAALRNSLRARRDRLAAGLTEIG-FA 309 (411)
T ss_dssp EEEECCH-HHH-HHHHHHHHHHT---------SCCCTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHT-CE
T ss_pred EEEeeCH-HHH-HHHHHHHhhcc---------CCCChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHcC-CE
Confidence 9998743 222 22111111100 111122333444455433 56677888889999999999999884 88
Q ss_pred EeecCCCccEEEEEecCCCCCCHHHHHHHHH-hcCceeeccccCCCCC----------CceEEEEEeccCCChHHHHHHH
Q 011057 366 IVSKDEGVPLVAFSLKDNKRHDEFEVAELLR-RFGWIVPAYTMPADAQ----------HITVLRVVIREDFSRTLAERLV 434 (494)
Q Consensus 366 ~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~-~~Gi~v~~~~~~~~~~----------~~~~lRvs~~~~~t~~~id~~i 434 (494)
+..+. ...++.+.+....+.+..++.++|. ++|+.+.......... +..++|+++.. +++++++++
T Consensus 310 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~~~~ 386 (411)
T 2o0r_A 310 VHDSY-GTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCK--RDDTLDEAI 386 (411)
T ss_dssp ECCCC-BSSEEEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCS--CHHHHHHHH
T ss_pred ecCCC-eeEEEEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecC--CHHHHHHHH
Confidence 76543 3336677774311246778999886 6799875432210011 35679999863 777777777
Q ss_pred HHHHHHHHH
Q 011057 435 LDITKVLHE 443 (494)
Q Consensus 435 ~~l~~~~~~ 443 (494)
+.|++++++
T Consensus 387 ~~l~~~~~~ 395 (411)
T 2o0r_A 387 RRLSVLAER 395 (411)
T ss_dssp HHHGGGGC-
T ss_pred HHHHHHHhc
Confidence 666655443
No 68
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.95 E-value=1e-26 Score=235.56 Aligned_cols=346 Identities=15% Similarity=0.032 Sum_probs=242.6
Q ss_pred CCCCCcccccccC-CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHH
Q 011057 54 GNPRLNLASFVTT-WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIML 132 (494)
Q Consensus 54 ~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~ 132 (494)
++..++|..+.+. ++++.+.+++ +.++.....|...++..++++++.+++.+.+|.+.+ ...+++|+||++|+.+
T Consensus 42 g~~~i~l~~~~~~~~~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~---~~~v~~~~g~t~a~~~ 117 (409)
T 2gb3_A 42 GVRIHHLNIGQPDLKTPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVK---PENVLVTNGGSEAILF 117 (409)
T ss_dssp TCEEEECSSCCCCSCCCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCC---GGGEEEESHHHHHHHH
T ss_pred CCCEEeccCCCCCCCCCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCC---HHHEEEeCCHHHHHHH
Confidence 4444555554444 3456788888 888654445555557788999988888887776542 2458999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccC-CccccCHHHHHHhhhhCCeEEEEeeC
Q 011057 133 AGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSE-GYYVMDPVKAVEMVDENTICVAAILG 211 (494)
Q Consensus 133 a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~t~~vv~~~~ 211 (494)
++.++.. .+++|+++.++|.++..+++..|++++.+++++ +++.+ +++|++++++++++|+++++
T Consensus 118 ~~~~~~~-------------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~~~~~~v~~~~p 183 (409)
T 2gb3_A 118 SFAVIAN-------------PGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFINERTKGIVLSNP 183 (409)
T ss_dssp HHHHHCC-------------TTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCCTTEEEEEEESS
T ss_pred HHHHhCC-------------CCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhCcCCeEEEECCC
Confidence 8887722 126899999999999999999999999999875 33455 88999999888899999999
Q ss_pred CCCccccc---CHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccc-cCCCceEEEEcCcccCC-cCCceE
Q 011057 212 STLNGEFE---DVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDF-RLPLVKSINVSGHKYGL-VYAGIG 286 (494)
Q Consensus 212 ~~~tG~~~---~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~hK~l~-~p~g~G 286 (494)
+||||.+. ++++|.++|+++ |+++++|++|+.+.. ....... + ...+.|++..++||++. ++.++|
T Consensus 184 ~nptG~~~~~~~l~~i~~~~~~~------~~~li~Dea~~~~~~--~~~~~~~-~~~~~~~~i~~~s~sK~~g~~G~r~G 254 (409)
T 2gb3_A 184 CNPTGVVYGKDEMRYLVEIAERH------GLFLIVDEVYSEIVF--RGEFASA-LSIESDKVVVIDSVSKKFSACGARVG 254 (409)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBC--SSCCCCG-GGSCCTTEEEEEESTTTTTCGGGCCE
T ss_pred CCCCCCCcCHHHHHHHHHHHHHc------CCEEEEECccccccc--CCCCCCc-cccCCCCEEEEecchhccCCccceEE
Confidence 99999984 589999999999 999999999987642 1111111 1 22357999999999985 344589
Q ss_pred EEEEeCCCCccccccc-ccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeE
Q 011057 287 WVIWRNKEDLPEELIF-HINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFN 365 (494)
Q Consensus 287 ~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~ 365 (494)
+++++++... +.+.. ...+. +.+.....++.++++. +.+.+++..++..++++++.+.|+++ +++
T Consensus 255 ~~~~~~~~l~-~~l~~~~~~~~-----------~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 320 (409)
T 2gb3_A 255 CLITRNEELI-SHAMKLAQGRL-----------APPLLEQIGSVGLLNL-DDSFFDFVRETYRERVETVLKKLEEH-GLK 320 (409)
T ss_dssp EEECSCHHHH-HHHHHHHHHSC-----------CCCHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred EEEECcHHHH-HHHHHHHhccC-----------CCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHc-Cce
Confidence 9887652222 11111 10110 1112222233333322 46677888888999999999999998 477
Q ss_pred E-eecCCCccEEEEEecCCCCCCHHHHHHHHHhc------CceeeccccCCC--CCCceEEEEEeccCCChHHHHHHHHH
Q 011057 366 I-VSKDEGVPLVAFSLKDNKRHDEFEVAELLRRF------GWIVPAYTMPAD--AQHITVLRVVIREDFSRTLAERLVLD 436 (494)
Q Consensus 366 ~-~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~------Gi~v~~~~~~~~--~~~~~~lRvs~~~~~t~~~id~~i~~ 436 (494)
+ ..+. ...++.+.+. +.+..++.++|.++ |+.+........ ..+..++|++++ +++++++++++.
T Consensus 321 ~~~~~~-~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~--~~~e~i~~~~~~ 394 (409)
T 2gb3_A 321 RFTKPS-GAFYITAELP---VEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSRAIDV 394 (409)
T ss_dssp CBCCCS-BSSEEEEECS---SSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHHHHHH
T ss_pred eeeCCC-eeEEEEEEeC---CCCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC--CCHHHHHHHHHH
Confidence 6 4332 2334444653 35788999999987 998754322111 123568999987 789999999999
Q ss_pred HHHHHHHHhc
Q 011057 437 ITKVLHELDS 446 (494)
Q Consensus 437 l~~~~~~l~~ 446 (494)
|+++++++++
T Consensus 395 l~~~l~~~~~ 404 (409)
T 2gb3_A 395 LMEGLKMFCS 404 (409)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhhh
Confidence 9999887653
No 69
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.95 E-value=4.4e-26 Score=226.19 Aligned_cols=329 Identities=13% Similarity=0.032 Sum_probs=234.1
Q ss_pred CCCCCcccccccC-CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHH
Q 011057 54 GNPRLNLASFVTT-WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIML 132 (494)
Q Consensus 54 ~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~ 132 (494)
++..++|....++ +++|.+.+++.+.+.. ...| +. ....++++++++++|.++ ..+++|+|+++|+.+
T Consensus 15 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~y---~~--~~~~~l~~~la~~~~~~~-----~~i~~~~g~~~a~~~ 83 (354)
T 3ly1_A 15 TDNPIRINFNENPLGMSPKAQAAARDAVVK-ANRY---AK--NEILMLGNKLAAHHQVEA-----PSILLTAGSSEGIRA 83 (354)
T ss_dssp SSSCEECSSCCCSSCCCHHHHHHHHHTGGG-TTSC---CH--HHHHHHHHHHHHHTTSCG-----GGEEEESHHHHHHHH
T ss_pred CCceEEccCCCCCCCCCHHHHHHHHHHHhh-CcCC---CC--CchHHHHHHHHHHhCCCh-----HHEEEeCChHHHHHH
Confidence 3444555554433 3568899999888764 2222 22 233467788999999864 459999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhh--hCCeEEEEee
Q 011057 133 AGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVD--ENTICVAAIL 210 (494)
Q Consensus 133 a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~--~~t~~vv~~~ 210 (494)
++.++..+ +++|+++.++|..+...++..|++++.++.+++ +.+|+++|+++++ +++++|++++
T Consensus 84 ~~~~l~~~-------------gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~l~~~~~~~~v~l~~ 149 (354)
T 3ly1_A 84 AIEAYASL-------------EAQLVIPELTYGDGEHFAKIAGMKVTKVKMLDN-WAFDIEGLKAAVAAYSGPSIVYLVN 149 (354)
T ss_dssp HHHHHCCT-------------TCEEEEESSSCTHHHHHHHHTTCEEEEECCCTT-SCCCHHHHHHHHHTCSSCEEEEEES
T ss_pred HHHHHhCC-------------CCeEEECCCCchHHHHHHHHcCCEEEEecCCCC-CCCCHHHHHHHhccCCCCCEEEEeC
Confidence 88876321 268999999999999999999999999999864 7899999999998 7899999999
Q ss_pred CCCCcccccCHHHHHHHHHH--hhcccCCCceEEEecccccccccccCCcccccccCC-CceEEEEcCcccCC-cCCceE
Q 011057 211 GSTLNGEFEDVKLLNDLLAE--KNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLP-LVKSINVSGHKYGL-VYAGIG 286 (494)
Q Consensus 211 ~~~~tG~~~~l~~I~~la~~--~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~hK~l~-~p~g~G 286 (494)
++||||.+.|++++.++++. + ++++++|++|+.+...-............ +.+++..+++|+++ ++.++|
T Consensus 150 p~nptG~~~~~~~l~~l~~~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G 223 (354)
T 3ly1_A 150 PNNPTGTITPADVIEPWIASKPA------NTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVG 223 (354)
T ss_dssp SCTTTCCCCCHHHHHHHHHTCCT------TEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCE
T ss_pred CCCCcCCCcCHHHHHHHHHhCCC------CeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhhe
Confidence 99999999999999988887 7 99999999998754210000000011122 45688889999985 677889
Q ss_pred EEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEE
Q 011057 287 WVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNI 366 (494)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~ 366 (494)
+++.++ ... +.+...... ++.+.....++.++++ ..+.+++..++..++++++.+.|++++ +++
T Consensus 224 ~~~~~~-~~~-~~~~~~~~~-----------~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~ 287 (354)
T 3ly1_A 224 YAVAHP-TVI-ALMGRYVAG-----------EKINFSGVDAALASMN--DSAFITYSKKSNDVSRQILLKALEDLK-LPY 287 (354)
T ss_dssp EEECCH-HHH-HHHGGGTTC-----------SCCCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHT-CCB
T ss_pred eeecCH-HHH-HHHHHhcCC-----------CCCCHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHHHCC-CeE
Confidence 988643 222 211111110 1222223333333333 225577888889999999999999884 776
Q ss_pred eecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHH
Q 011057 367 VSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLH 442 (494)
Q Consensus 367 ~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~ 442 (494)
..+ ..+++.+.+.. +..++.+.|.++|+.++ ...+ ....++|++++ ++++++++++.|+++++
T Consensus 288 ~~~--~~~~~~~~~~~----~~~~~~~~l~~~gi~v~-g~~~---~~~~~iRis~~---~~~~i~~~~~~l~~~l~ 350 (354)
T 3ly1_A 288 LPS--EGNFVFHQLVV----PLKDYQTHMADAGVLIG-RAFP---PADNWCRISLG---TPQEMQWVADTMREFRK 350 (354)
T ss_dssp CCC--CSSEEEEECSS----CHHHHHHHHHHTTEECC-CCCT---TCTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred CCC--CceEEEEECCC----CHHHHHHHHHHCCEEEe-ecCC---CCCCEEEEEcC---CHHHHHHHHHHHHHHHH
Confidence 533 45677777643 67899999999999876 2222 24568999986 78899999999988875
No 70
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.95 E-value=3.8e-26 Score=231.10 Aligned_cols=349 Identities=14% Similarity=0.048 Sum_probs=238.6
Q ss_pred CCCCCcccccccC---CChHHHHHHHHHHhccc---CCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChh
Q 011057 54 GNPRLNLASFVTT---WMEPECDKLMMAAINKN---YVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSS 127 (494)
Q Consensus 54 ~~~~~~~~~~~~~---~~~p~~~~~~~~~~~~~---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt 127 (494)
|+..++|.++.+. .+++.+.+++.+.++.. .. |...++..++++++.+++.+.+|.+.+ ...+++|+|++
T Consensus 33 g~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~---~~~v~~t~g~t 108 (407)
T 2zc0_A 33 GVKLISLAAGDPDPELIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVS---PENIVITIGGT 108 (407)
T ss_dssp SCCCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCC---GGGEEEESHHH
T ss_pred CCceEeCCCCCCCchhCCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCC---cceEEEecCHH
Confidence 3355566555433 24577888888887653 23 444456788888888888777785431 24589999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhh----h--
Q 011057 128 EAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVD----E-- 201 (494)
Q Consensus 128 ~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~----~-- 201 (494)
+|+.+++.++..+ +++|+++.++|..+...++..|++++.++++++ + +|+++|+++++ +
T Consensus 109 ~a~~~~~~~~~~~-------------gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~-~d~~~l~~~l~~~~~~~~ 173 (407)
T 2zc0_A 109 GALDLLGRVLIDP-------------GDVVITENPSYINTLLAFEQLGAKIEGVPVDND-G-MRVDLLEEKIKELKAKGQ 173 (407)
T ss_dssp HHHHHHHHHHCCT-------------TCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT-E-ECHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCC-------------CCEEEEeCCChHHHHHHHHHcCCEEEEcccCCC-C-CCHHHHHHHHHhhhcccC
Confidence 9999888887321 258999999999999999999999999998765 3 99999999998 5
Q ss_pred CCeEE-EEeeCCCCcccccCHH---HHHHHHHHhhcccCCCceEEEecccccccccccCCcc--cccccCCCceEEEEcC
Q 011057 202 NTICV-AAILGSTLNGEFEDVK---LLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPEL--EWDFRLPLVKSINVSG 275 (494)
Q Consensus 202 ~t~~v-v~~~~~~~tG~~~~l~---~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~ 275 (494)
++++| ++++++||||.+.|++ +|+++|+++ |+++++|++|+.+.. ..... -..+...+.+.+..++
T Consensus 174 ~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--~~~~~~~~~~~~~~~~~i~~~s~ 245 (407)
T 2zc0_A 174 KVKLIYTIPTGQNPMGVTMSMERRKALLEIASKY------DLLIIEDTAYNFMRY--EGGDIVPLKALDNEGRVIVAGTL 245 (407)
T ss_dssp CEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTSBS--SCSSCCCGGGGCSSCCEEEEEES
T ss_pred CceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEECCCccccc--CCCCCCChhhcCCCCCEEEEccc
Confidence 67776 4678899999998876 999999999 999999999987642 11100 0111222345677788
Q ss_pred cccCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhc-H-hHHHHHHHHHHHHHHH
Q 011057 276 HKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG-F-EGYRNVMENCHENAMV 353 (494)
Q Consensus 276 hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~-~-~g~~~~~~~~~~~a~~ 353 (494)
+|++.++.++|++++++ ... ..+....... + ...+.....++.++++... . +.+++..++..+++++
T Consensus 246 sK~~~~G~r~G~~~~~~-~~~-~~~~~~~~~~-------~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 314 (407)
T 2zc0_A 246 SKVLGTGFRIGWIIAEG-EIL-KKVLMQKQPI-------D--FCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDI 314 (407)
T ss_dssp TTTTCTTSCCEEEECCH-HHH-HHHHHHHTTT-------T--SSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHH
T ss_pred ccccCCCcceEEEecCH-HHH-HHHHHHHHhh-------c--CCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 99998555689998753 222 2211110000 0 1112222333333333221 2 3456677778889999
Q ss_pred HHHHHhh-CCCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhc-CceeeccccCCC-CCCceEEEEEeccCCChHHH
Q 011057 354 LKEGLEK-TGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRF-GWIVPAYTMPAD-AQHITVLRVVIREDFSRTLA 430 (494)
Q Consensus 354 l~~~L~~-~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~-~~~~~~lRvs~~~~~t~~~i 430 (494)
+.+.|++ .+++++..+. ...++.+.++. +.+..++.++|.++ |+.+........ ..+..++|++++.. +.+++
T Consensus 315 l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i 390 (407)
T 2zc0_A 315 MLKALENHLPNAEFTKPI-AGMFVMFFLPE--GADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEI 390 (407)
T ss_dssp HHHHHHHHCTTSCBCCCS-BSSEEEEECST--TCCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHH
T ss_pred HHHHHHHhCCCCEEecCC-CcEEEEEEcCC--CCCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHH
Confidence 9999987 4667665443 34577777743 45788999999999 998754332211 11346899999865 88999
Q ss_pred HHHHHHHHHHHHHH
Q 011057 431 ERLVLDITKVLHEL 444 (494)
Q Consensus 431 d~~i~~l~~~~~~l 444 (494)
+++++.|+++++++
T Consensus 391 ~~~~~~l~~~l~~~ 404 (407)
T 2zc0_A 391 PIGIKKLAKLYKEK 404 (407)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988765
No 71
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.95 E-value=3.1e-26 Score=228.26 Aligned_cols=328 Identities=15% Similarity=0.071 Sum_probs=232.3
Q ss_pred CCCCcccccccC-CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHH
Q 011057 55 NPRLNLASFVTT-WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLA 133 (494)
Q Consensus 55 ~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a 133 (494)
+..++|....+. +++|.+.+++.+.+.. ...|....+ . ++++++++++|.+. ..+++|+|+++++.++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~y~~~~~-~----~lr~~la~~~~~~~-----~~v~~~~g~~~a~~~~ 98 (365)
T 3get_A 30 KEVIKLASNENPFGTPPKAIECLRQNANK-AHLYPDDSM-I----ELKSTLAQKYKVQN-----ENIIIGAGSDQVIEFA 98 (365)
T ss_dssp SCCEECSSCCCTTCSCHHHHHHHHHHGGG-TTSCCCTTC-H----HHHHHHHHHHTCCG-----GGEEEESSHHHHHHHH
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHHh-hccCCCCCh-H----HHHHHHHHHhCCCc-----ceEEECCCHHHHHHHH
Confidence 344555554433 3568899999888764 222322222 3 46667899999864 4599999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCC
Q 011057 134 GLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGST 213 (494)
Q Consensus 134 ~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~ 213 (494)
+.++..+ +++|+++.++|..+...++..|++++.++++++++ +|+++|++++++++++|++++++|
T Consensus 99 ~~~l~~~-------------gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~d~~~l~~~l~~~~~~v~~~~p~n 164 (365)
T 3get_A 99 IHSKLNS-------------KNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNL-DEFKKLYETHKDEIKLIFLCLPNN 164 (365)
T ss_dssp HHHHCCT-------------TCEEEECSSCCTHHHHHHHHHTCEEEECSSSSCCH-HHHHHHHHHTTTTEEEEEEESSCT
T ss_pred HHHHhCC-------------CCEEEEeCCChHHHHHHHHHcCCEEEEEecCCCCC-CCHHHHHHHhCCCCCEEEEcCCCC
Confidence 8776321 26899999999999999999999999999833347 999999999998999999999999
Q ss_pred CcccccCHHHHHHHHH--HhhcccCCCceEEEeccccccc---ccccCCcccccccCCCceEEEEcCcccCC-cCCceEE
Q 011057 214 LNGEFEDVKLLNDLLA--EKNKETGWDTPIHVDAASGGFI---APFLYPELEWDFRLPLVKSINVSGHKYGL-VYAGIGW 287 (494)
Q Consensus 214 ~tG~~~~l~~I~~la~--~~~~~~~~~~~l~vD~a~~~~~---~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~G~ 287 (494)
|||.+.|+++|.++++ ++ ++++++|++|+.+. .................+++..+++|++. ++.++|+
T Consensus 165 ptG~~~~~~~l~~l~~~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~ 238 (365)
T 3get_A 165 PLGECLDASEATEFIKGVNE------DCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGY 238 (365)
T ss_dssp TTCCCCCHHHHHHHHHTSCT------TSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEE
T ss_pred CCCCCcCHHHHHHHHHhCCC------CcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEE
Confidence 9999999999999998 66 99999999998653 11000000001112246678889999974 6678899
Q ss_pred EEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEe
Q 011057 288 VIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIV 367 (494)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 367 (494)
++++ +... ..+...... .+.+.....++.++++ ..+.+++..++..++++++.+.|+++ ++++.
T Consensus 239 ~~~~-~~~~-~~~~~~~~~-----------~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~ 302 (365)
T 3get_A 239 GIAN-ANII-SAFYKLRAP-----------FNVSNLALKAAVAAMD--DDEFTEKTLENNFSQMELYKEFAKKH-NIKII 302 (365)
T ss_dssp EEEC-HHHH-HHHHHHSCT-----------TCSCHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEC
T ss_pred EEcC-HHHH-HHHHHhcCC-----------CCcCHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEC
Confidence 9873 3222 211111110 1122233333334443 23567788889999999999999999 48875
Q ss_pred ecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHH
Q 011057 368 SKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVL 441 (494)
Q Consensus 368 ~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~ 441 (494)
.+ ..+++.+.++. . +..++.+.|.++|+.+.....+. ..++|++++ +.++++++++.|++++
T Consensus 303 ~~--~~~~~~~~~~~--~-~~~~~~~~l~~~gi~v~~g~~~~----~~~iRis~~---~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 303 DS--YTNFITYFFDE--K-NSTDLSEKLLKKGIIIRNLKSYG----LNAIRITIG---TSYENEKFFTEFDKIL 364 (365)
T ss_dssp CC--SSSEEEEECSS--S-CHHHHHHHHHTTTEECEECGGGT----CSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred CC--CCeEEEEECCC--C-CHHHHHHHHHHCCEEEEECccCC----CCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence 43 45677777743 2 68899999999999876543332 468999987 7899999999998875
No 72
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.95 E-value=5.5e-27 Score=232.60 Aligned_cols=328 Identities=15% Similarity=0.121 Sum_probs=226.4
Q ss_pred CcccccccCCChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHH
Q 011057 58 LNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAF 137 (494)
Q Consensus 58 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~ 137 (494)
+.|.+..+.+++|.+.+++.+.+..... .+ +...+++++++++++++| +. ..+++|+||++|+.+++.++
T Consensus 10 id~~~~~~~~~~~~v~~a~~~~~~~~~~---~~-~~~~~~~~l~~~la~~~g-~~-----~~v~~~~~gt~a~~~al~~~ 79 (356)
T 1v72_A 10 LGFSSDNIAGASPEVAQALVKHSSGQAG---PY-GTDELTAQVKRKFCEIFE-RD-----VEVFLVPTGTAANALCLSAM 79 (356)
T ss_dssp CBCSCGGGCCCCHHHHHHHHHTTSSCCC---ST-TCSHHHHHHHHHHHHHHT-SC-----CEEEEESCHHHHHHHHHHTS
T ss_pred EeeccCCccCCCHHHHHHHHhhccCccc---cc-ccchHHHHHHHHHHHHhC-CC-----CcEEEeCCccHHHHHHHHHh
Confidence 3455555556778888888877532111 11 234566778899999999 32 24789999999999888776
Q ss_pred HHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHH--HHHc--CCeeEEEeccCCccccCHHHHHH-hhhh-------CCeE
Q 011057 138 KRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKF--ARYF--EVELKEVKLSEGYYVMDPVKAVE-MVDE-------NTIC 205 (494)
Q Consensus 138 ~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~--~~~~--G~~v~~v~~~~~~~~~d~~~L~~-~i~~-------~t~~ 205 (494)
+. .+++|+++.++|++.... +... |++++.++.++ +.+|+++|++ ++++ ++++
T Consensus 80 ~~-------------~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~d~~~l~~~~i~~~~~~~~~~~~~ 144 (356)
T 1v72_A 80 TP-------------PWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPA--AKLDIVRLRERTREKVGDVHTTQPAC 144 (356)
T ss_dssp CC-------------TTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCGG--GCCCHHHHHHHTTSSTTCTTSCEEEE
T ss_pred cC-------------CCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCCC--CeEcHHHHHHHhhhcchhhccCCceE
Confidence 32 125899999999887766 7777 99999888753 6899999999 8875 5788
Q ss_pred EEEeeCCCCccc---ccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccC-CCceEEEEcCcccCCc
Q 011057 206 VAAILGSTLNGE---FEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRL-PLVKSINVSGHKYGLV 281 (494)
Q Consensus 206 vv~~~~~~~tG~---~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~-~~~D~~~~~~hK~l~~ 281 (494)
|+++++++ ||. .+++++|.++|+++ |+++|+|++|+.+........ ...+.. .++|++++++||+ +.
T Consensus 145 v~~~~~~~-tG~~~~~~~l~~i~~~~~~~------~~~li~D~a~~~~~~~~~~~~-~~~~~~~~~~d~~~~s~sK~-g~ 215 (356)
T 1v72_A 145 VSITQATE-VGSIYTLDEIEAIGDVCKSS------SLGLHMDGSRFANALVSLGCS-PAEMTWKAGVDALSFGATKN-GV 215 (356)
T ss_dssp EEEESSCT-TSCCCCHHHHHHHHHHHHHT------TCEEEEEETTHHHHHHHHTCC-TTTTTGGGTCCEEEECCGGG-TC
T ss_pred EEEEcCCC-CCccCCHHHHHHHHHHHHHc------CCeEEEEchhhHhHhccCCCC-HHHhhhhhcCCEEEEecccC-CC
Confidence 88888764 999 67799999999999 999999999975422111100 011111 2688999999999 56
Q ss_pred CCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhC
Q 011057 282 YAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKT 361 (494)
Q Consensus 282 p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~ 361 (494)
|.|+|+++.+ +..+ ..+.....+.+ ........++..+++.+..+.+.+..++..++++++.+.|+++
T Consensus 216 ~~G~g~~~~~-~~~~-~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~ 283 (356)
T 1v72_A 216 LAAEAIVLFN-TSLA-TEMSYRRKRAG----------HLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGL 283 (356)
T ss_dssp SSCEEEEESS-GGGH-HHHHHHHHHTT----------CCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCccEEEEEC-HHHH-hhHHHHhhccC----------chhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 8888888763 3332 21111001111 0001122333445566655556677888889999999999998
Q ss_pred CCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHH
Q 011057 362 GRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVL 441 (494)
Q Consensus 362 ~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~ 441 (494)
+++++..+. ..+++.+.++ .++.++|.++|+.+....+ +..++|++++..+++++++++++.|++++
T Consensus 284 ~g~~~~~~~-~~~~~~~~~~-------~~~~~~l~~~gi~v~~g~~-----~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 350 (356)
T 1v72_A 284 GGVEVLGGT-EANILFCRLD-------SAMIDALLKAGFGFYHDRW-----GPNVVRFVTSFATTAEDVDHLLNQVRLAA 350 (356)
T ss_dssp TTEEEESCC-CSSEEEEEEC-------HHHHHHHHHTTCBCBCSSS-----STTEEEEECCTTCCHHHHHHHHHHHHHTC
T ss_pred CCcEEccCC-CccEEEEEcC-------HHHHHHHHhcCeEEecccc-----CCCeEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 779886554 5677777762 2799999999998753221 14579999988889999999999888876
Q ss_pred HHH
Q 011057 442 HEL 444 (494)
Q Consensus 442 ~~l 444 (494)
++.
T Consensus 351 ~~~ 353 (356)
T 1v72_A 351 DRT 353 (356)
T ss_dssp ---
T ss_pred Hhh
Confidence 554
No 73
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.95 E-value=2.8e-26 Score=233.33 Aligned_cols=348 Identities=11% Similarity=0.044 Sum_probs=244.3
Q ss_pred CCCCCcccccccC-CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHH
Q 011057 54 GNPRLNLASFVTT-WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIML 132 (494)
Q Consensus 54 ~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~ 132 (494)
++.++.|+...+. +.+|.+.+++.+.++.....|... ..++++++++++++.+|.+.+ ...+++|+|+++|+..
T Consensus 60 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~l~~~l~~~~g~~~~---~~~v~~~~g~~ea~~~ 134 (421)
T 3l8a_A 60 NPELLQMWVADMDFLPVPEIKEAIINYGREHIFGYNYF--NDDLYQAVIDWERKEHDYAVV---KEDILFIDGVVPAISI 134 (421)
T ss_dssp CTTCEECCSSCCCSCCCHHHHHHHHHHHHHCCSSCBCC--CHHHHHHHHHHHHHHHCCCCC---GGGEEEESCHHHHHHH
T ss_pred CCCeeecccCCCCCCCCHHHHHHHHHHHhcCCcCCCCC--CHHHHHHHHHHHHHHhCCCCC---HHHEEEcCCHHHHHHH
Confidence 4555666555443 346889999988887644444433 378888999999999995432 2469999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEecc--CCccccCHHHHHHhhh-hCCeEEEEe
Q 011057 133 AGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLS--EGYYVMDPVKAVEMVD-ENTICVAAI 209 (494)
Q Consensus 133 a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~--~~~~~~d~~~L~~~i~-~~t~~vv~~ 209 (494)
++.++..+ +++|+++.++|..+..++...|.+++.+|++ ++++.+|+++|+++++ +++++|+++
T Consensus 135 a~~~~~~~-------------gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~ 201 (421)
T 3l8a_A 135 ALQAFSEK-------------GDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLC 201 (421)
T ss_dssp HHHHHSCT-------------EEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHhcCC-------------CCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEEC
Confidence 98887321 2579999999999999999999999999985 4446799999999998 689999999
Q ss_pred eCCCCcccc---cCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccc--cCCCceEEEEcCcccCC-cCC
Q 011057 210 LGSTLNGEF---EDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDF--RLPLVKSINVSGHKYGL-VYA 283 (494)
Q Consensus 210 ~~~~~tG~~---~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~--~~~~~D~~~~~~hK~l~-~p~ 283 (494)
+++|++|.+ +++++|.++|+++ |+++++|++|+++...-.....-..+ ...+.+.+..+++|++. ++.
T Consensus 202 ~p~nptG~~~~~~~l~~l~~l~~~~------~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~ 275 (421)
T 3l8a_A 202 SPHNPGGRVWDNDDLIKIAELCKKH------GVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGT 275 (421)
T ss_dssp SSBTTTTBCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGG
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHc------CCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchh
Confidence 999999999 7899999999999 99999999998754210000000011 11245677888999985 667
Q ss_pred ceEEEEEeCCCCccccccccc-CCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCC
Q 011057 284 GIGWVIWRNKEDLPEELIFHI-NYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTG 362 (494)
Q Consensus 284 g~G~~~~~~~~~~~~~~~~~~-~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~ 362 (494)
++|+++++++... ..+.... .+. .++.+.....++.++++. +.+.+++..++..++++++.+.|++++
T Consensus 276 ~~G~~~~~~~~l~-~~~~~~~~~~~---------~~~~n~~~~~a~~aal~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~ 344 (421)
T 3l8a_A 276 KNSFAIIQNESLR-RKFQYRQLANN---------QHEVPTVGMIATQAAFQY-GKPWLEELKTVIEGNIKLVIKELEAKT 344 (421)
T ss_dssp CCEEEECCSHHHH-HHHHHHHHHTT---------CSCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred heEeEEcCCHHHH-HHHHHHHHhcc---------cCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7899987744332 2111110 110 012233444445555553 456678888889999999999999887
Q ss_pred CeEEeecCCCccEEE-EEecCCCCCCHHHHHHHHHh-cCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHH
Q 011057 363 RFNIVSKDEGVPLVA-FSLKDNKRHDEFEVAELLRR-FGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKV 440 (494)
Q Consensus 363 ~~~~~~~~~~~~~v~-f~~~~~~~~~~~~l~~~L~~-~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~ 440 (494)
++++..+. .+++. +.+.. .+.+..++.++|.+ .|+.+....... ..+..++|+++. +++++++++++.|+++
T Consensus 345 ~i~~~~~~--~~~~~~v~~~~-~~~~~~~l~~~l~~~~gi~v~~g~~f~-~~~~~~iRi~~~--~~~~~i~~~l~~l~~~ 418 (421)
T 3l8a_A 345 KIKVMEPE--GTYLVWLDFSA-YAIAQPQLSEKLQNEAKVVLNDGAHFG-KEGKYFARLNVA--TPKNTVQEALSRIISV 418 (421)
T ss_dssp SCEEECCS--BSSEEEEECGG-GTCCTTHHHHHHHHTTCEECEEGGGGC-GGGTTEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred CceEeCCC--eeEEEEEeccc-cCCCHHHHHHHHHHhCCEEEECchhhC-CCCCCEEEEEec--CCHHHHHHHHHHHHHH
Confidence 78877553 34444 66642 13456789999975 599875433221 134578999987 5888888888888776
Q ss_pred HH
Q 011057 441 LH 442 (494)
Q Consensus 441 ~~ 442 (494)
++
T Consensus 419 l~ 420 (421)
T 3l8a_A 419 FG 420 (421)
T ss_dssp C-
T ss_pred Hh
Confidence 54
No 74
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.95 E-value=9.5e-26 Score=224.28 Aligned_cols=329 Identities=16% Similarity=0.054 Sum_probs=228.7
Q ss_pred CCCCCcccccccC-CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHH
Q 011057 54 GNPRLNLASFVTT-WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIML 132 (494)
Q Consensus 54 ~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~ 132 (494)
++..++|.+..+. +++|.+.+++.+.+... ..| ..++.. ++++++++++|.++ ..+++|+|+++|+.+
T Consensus 25 ~~~~idl~~~~~~~~~~~~v~~a~~~~~~~~-~~y-~~~~~~----~l~~~la~~~~~~~-----~~i~~~~g~t~al~~ 93 (361)
T 3ftb_A 25 GRELLDYSSNINPLGIPKSFLNNIDEGIKNL-GVY-PDVNYR----RLNKSIENYLKLKD-----IGIVLGNGASEIIEL 93 (361)
T ss_dssp ---CEETTCCCCTTCSCHHHHTTHHHHHHGG-GSC-CCTTCH----HHHHHHHHHHTCCS-----CEEEEESSHHHHHHH
T ss_pred CCCEEEecCCCCCCCCCHHHHHHHHHHHHHh-cCC-CCccHH----HHHHHHHHHhCCCc-----ceEEEcCCHHHHHHH
Confidence 3444555554333 35678888888777653 222 223333 46667888888765 358999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCC
Q 011057 133 AGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGS 212 (494)
Q Consensus 133 a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~ 212 (494)
++.++ ++|+++.++|..+...++..|++++.++++++ +.+++++|++++++ +++|++++++
T Consensus 94 ~~~~~-----------------d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~l~~~l~~-~~~v~i~~p~ 154 (361)
T 3ftb_A 94 SISLF-----------------EKILIIVPSYAEYEINAKKHGVSVVFSYLDEN-MCIDYEDIISKIDD-VDSVIIGNPN 154 (361)
T ss_dssp HHTTC-----------------SEEEEEESCCTHHHHHHHHTTCEEEEEECCTT-SCCCHHHHHHHTTT-CSEEEEETTB
T ss_pred HHHHc-----------------CcEEEecCChHHHHHHHHHcCCeEEEeecCcc-cCCCHHHHHHhccC-CCEEEEeCCC
Confidence 77665 36999999999999999999999999999864 46888999999988 9999999999
Q ss_pred CCcccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCC-cCCceEEE
Q 011057 213 TLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGL-VYAGIGWV 288 (494)
Q Consensus 213 ~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~G~~ 288 (494)
||||.+.| +++|+++|+++ |+++++|++|+.+... ..............+++..+++|++. ++.++|++
T Consensus 155 nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~ 227 (361)
T 3ftb_A 155 NPNGGLINKEKFIHVLKLAEEK------KKTIIIDEAFIEFTGD-PSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYG 227 (361)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHH------TCEEEEECSSGGGTCC-TTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEE
T ss_pred CCCCCCCCHHHHHHHHHHhhhc------CCEEEEECcchhhcCC-cccchhHhcccCCCEEEEeeChhhcCCCCcceeEE
Confidence 99999965 66788888899 9999999999876432 00111101122234466778999885 66778988
Q ss_pred EEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeE-Ee
Q 011057 289 IWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFN-IV 367 (494)
Q Consensus 289 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~-~~ 367 (494)
++.++... ..+..... . ++.+.....++.++++ ..+.+++..++..++++++.+.|+++++++ +.
T Consensus 228 ~~~~~~~~-~~~~~~~~-------~----~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 293 (361)
T 3ftb_A 228 ITNNKEIA-AKIKAKQN-------P----WNINCFAEMAAINCLK--DTNYIEESLLWIKKERKRFIEELNKIGFIKRVF 293 (361)
T ss_dssp EESCHHHH-HHHHTTSC-------T----TCSCHHHHHHHHHTSS--CHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEE
T ss_pred EeCCHHHH-HHHHhhCC-------C----CCCCHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHHhCCCCceec
Confidence 75554332 11111000 0 1222223333333333 245677888889999999999999998788 55
Q ss_pred ecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHH
Q 011057 368 SKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLH 442 (494)
Q Consensus 368 ~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~ 442 (494)
.+ ..+++.+.+.. .+..++.++|.++|+.+....... ..+..++|++++ +.++++++++.|+++.+
T Consensus 294 ~~--~~~~~~~~~~~---~~~~~l~~~l~~~gi~v~~g~~~~-~~~~~~iRis~~---~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 294 SP--HANFVLCRLEN---ISGEKLYDSLLKEDIVIRRCCNFI-GLDDSFVRFAIK---DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp CC--SSSEEEEEESS---SCHHHHHHHHHTTTEECEECTTST-TCCTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred CC--CCeEEEEEcCC---CCHHHHHHHHHHCCeEEeeCccCC-CCCCCEEEEEcC---CHHHHHHHHHHHHHHHh
Confidence 43 45778888753 478899999999999886433221 123568999987 77888888888887765
No 75
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.95 E-value=3.3e-26 Score=229.41 Aligned_cols=344 Identities=9% Similarity=-0.012 Sum_probs=237.9
Q ss_pred CCCCcccccccC-CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHH
Q 011057 55 NPRLNLASFVTT-WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLA 133 (494)
Q Consensus 55 ~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a 133 (494)
+..++|..+.+. +++|.+.+++.+.+......|... ..++++++++++++.+|.+.+ ...+++|+|+++|+.++
T Consensus 24 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~~~~~l~~~l~~~~g~~~~---~~~v~~~~g~~~a~~~~ 98 (383)
T 3kax_A 24 EELIHAWIADMDFEVPQPIQTALKKRIEHPIFGYTLP--PENIGDIICNWTKKQYNWDIQ---KEWIVFSAGIVPALSTS 98 (383)
T ss_dssp SCCEECCCSSCSSCCCHHHHHHHHHHHHSCCCCCCCC--CTTHHHHHHHHHHHHHCCCCC---GGGEEEESCHHHHHHHH
T ss_pred CCeeecccccCCCCCCHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHHHHHHHhCCCCC---hhhEEEcCCHHHHHHHH
Confidence 445556655443 346889999988887644444333 567888999999999995431 24689999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccC--CccccCHHHHHHhhhhCCeEEEEeeC
Q 011057 134 GLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSE--GYYVMDPVKAVEMVDENTICVAAILG 211 (494)
Q Consensus 134 ~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~--~~~~~d~~~L~~~i~~~t~~vv~~~~ 211 (494)
+.++..+ +++|+++.++|.++...++..|++++.+++++ +++.+|+++|++++++++++|+++++
T Consensus 99 ~~~l~~~-------------gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p 165 (383)
T 3kax_A 99 IQAFTKE-------------NESVLVQPPIYPPFFEMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQFQQGVKLMLLCSP 165 (383)
T ss_dssp HHHHCCT-------------TCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTTTCCEEEEESS
T ss_pred HHHhCCC-------------CCEEEEcCCCcHHHHHHHHHcCCEEEeccceecCCcEEEcHHHHHHHhCcCCeEEEEeCC
Confidence 8877321 26899999999999999999999999999863 23669999999999888999999999
Q ss_pred CCCcccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCccc--ccccC--CCceEEEEcCcccCC-cCC
Q 011057 212 STLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELE--WDFRL--PLVKSINVSGHKYGL-VYA 283 (494)
Q Consensus 212 ~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~~~--~~~D~~~~~~hK~l~-~p~ 283 (494)
+||||.+.| +++|.++|+++ ++++++|++|+.+.. ...... ..+.. ...+.+..+++|++. ++.
T Consensus 166 ~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ 237 (383)
T 3kax_A 166 HNPIGRVWKKEELTKLGSLCTKY------NVIVVADEIHSDIIY--ADHTHTPFASLSEELAARTITCMAPSKTFNIAGL 237 (383)
T ss_dssp BTTTTBCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBC--TTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGG
T ss_pred CCCCCcCcCHHHHHHHHHHHHHC------CCEEEEEcccccccc--CCCCceeHhhcCccccCcEEEEEEChhhccCcch
Confidence 999999966 56667779999 999999999987542 111000 01110 145577889999886 667
Q ss_pred ceEEEEEeCCCCcccccccc-cCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhh-C
Q 011057 284 GIGWVIWRNKEDLPEELIFH-INYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK-T 361 (494)
Q Consensus 284 g~G~~~~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~-~ 361 (494)
++|++++.++... ..+... ..+. .++.+.....++.++++. ..+.+++..++..++++++.+.|++ +
T Consensus 238 r~G~~~~~~~~~~-~~~~~~~~~~~---------~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~ 306 (383)
T 3kax_A 238 QASIIIIPNEKLR-QAFTSIQYRQG---------FHGLNIFAYTAMQSAYTE-CNDWLNEIRFYIEDNAKFACEYIKDHI 306 (383)
T ss_dssp CCEEEECCCHHHH-HHHHHHHHHTT---------CCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hheEEEeCCHHHH-HHHHHHHhhcc---------cCCCCHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 7899887544322 111110 0110 012222233333333322 3455778888899999999999998 6
Q ss_pred CCeEEeecCCCccEEE-EEecCCCCCCHHHHHHHHH-hcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHH
Q 011057 362 GRFNIVSKDEGVPLVA-FSLKDNKRHDEFEVAELLR-RFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITK 439 (494)
Q Consensus 362 ~~~~~~~~~~~~~~v~-f~~~~~~~~~~~~l~~~L~-~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~ 439 (494)
+++++..+. .+++. +.+.. .+.+..++.++|. ++|+.+....... ..+..++|++++ .++++++++++.|++
T Consensus 307 ~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g~~~~-~~~~~~iRi~~~--~~~~~i~~~l~~l~~ 380 (383)
T 3kax_A 307 PTLSVMKPE--GSFLLWIDCSA-LNLSQDERTKLLEEKGKIIVEPGEKYG-LGGEEHIGINIG--CPRSVLEEILNRLRH 380 (383)
T ss_dssp TTCEECCCS--BSSEEEEECGG-GCCCHHHHHHHHHHTSCEECEESGGGC-TTCTTEEEEECS--SCHHHHHHHHHHHHH
T ss_pred CCceEecCC--ceEEEEEEccc-cCCCHHHHHHHHHhhCCEEeECchhhc-CCCCCeEEEEEc--CCHHHHHHHHHHHHH
Confidence 778877543 44444 56542 2357889999998 6899886433221 123568999987 478888888887776
Q ss_pred HH
Q 011057 440 VL 441 (494)
Q Consensus 440 ~~ 441 (494)
++
T Consensus 381 ~l 382 (383)
T 3kax_A 381 TF 382 (383)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 76
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.95 E-value=5.7e-26 Score=230.33 Aligned_cols=353 Identities=13% Similarity=0.049 Sum_probs=240.3
Q ss_pred hcCCCCCcccccccCC-ChHHHHHHHHHHhccc-CCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHH
Q 011057 52 LDGNPRLNLASFVTTW-MEPECDKLMMAAINKN-YVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEA 129 (494)
Q Consensus 52 ~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a 129 (494)
.+++..++|..+.+.. ++|.+.+++.+.+... ...|...++..++++.+.+++.+.+|.+.+. ...+++|+|+++|
T Consensus 34 ~~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~--~~~v~~t~g~~~a 111 (412)
T 2x5d_A 34 RRGEDIIDLSMGNPDGPTPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDP--ESEAIVTIGSKEG 111 (412)
T ss_dssp HTTCCCEECSSCCCCSCCCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCT--TTSEEEESCHHHH
T ss_pred hcCCCEEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCC--CcCEEEcCChHHH
Confidence 3556666666655443 4678888888877653 2334445567888888888888777974311 0248999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCC-ccccCHHHHHHhhhhCCeEEEE
Q 011057 130 IMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEG-YYVMDPVKAVEMVDENTICVAA 208 (494)
Q Consensus 130 ~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~~i~~~t~~vv~ 208 (494)
+.+++.++..+ +++|+++.++|..+...++..|++++.++++++ ++.+|+++|++++++++++|++
T Consensus 112 ~~~~~~~~~~~-------------gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l 178 (412)
T 2x5d_A 112 LAHLMLATLDH-------------GDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIPKPRMMIL 178 (412)
T ss_dssp HHHHHHHHCCT-------------TCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEE
T ss_pred HHHHHHHhCCC-------------CCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhcccCceEEEE
Confidence 99888876321 258999999999999999999999999998764 4568999999999888999999
Q ss_pred eeCCCCcccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCccc--cccc-CCCceEEEEcCcccCC-c
Q 011057 209 ILGSTLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELE--WDFR-LPLVKSINVSGHKYGL-V 281 (494)
Q Consensus 209 ~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~~-~~~~D~~~~~~hK~l~-~ 281 (494)
++++||||.+.| +++|.++|+++ |+++++|++|+.+.. ...... ..+. ..+.+++..+++|++. +
T Consensus 179 ~~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 250 (412)
T 2x5d_A 179 GFPSNPTAQCVELDFFERVVALAKQY------DVMVVHDLAYADIVY--DGWKAPSIMQVPGAKDIAVEFFTLSKSYNMA 250 (412)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBC--TTCCCCCGGGSTTGGGTEEEEEECC-CCSCT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHc------CCEEEEecccccccc--CCCCCCChhhccCccCcEEEEecCccccCCc
Confidence 999999999865 68899999999 999999999988642 111000 1111 1357888999999985 5
Q ss_pred CCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhC
Q 011057 282 YAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKT 361 (494)
Q Consensus 282 p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~ 361 (494)
+.++|++++++ ..+ ..+.....+. .++.+.....++.++++. +.+.+++..++..++++++.+.|+++
T Consensus 251 G~r~G~~~~~~-~~~-~~l~~~~~~~---------~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~ 318 (412)
T 2x5d_A 251 GWRIGFMVGNP-ELV-SALARIKSYH---------DYGTFTPLQVAAIAALEG-DQQCVRDIARQYQQRRDVLVKGLREA 318 (412)
T ss_dssp TSCCEEEEECH-HHH-HHHHHHHHHH---------CCCCCHHHHHHHHHHHHS-CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEcCH-HHH-HHHHHHHhhh---------ccCCCHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 56789998743 222 2111110000 012222233333333332 23557788888889999999999988
Q ss_pred CCeEEeecCCCcc-EEEEEecCCCCC---CHHHHHHHHHh-cCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHH
Q 011057 362 GRFNIVSKDEGVP-LVAFSLKDNKRH---DEFEVAELLRR-FGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLD 436 (494)
Q Consensus 362 ~~~~~~~~~~~~~-~v~f~~~~~~~~---~~~~l~~~L~~-~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~ 436 (494)
+ +++..+ ..+ ++.+.++ .++ +..++.++|.+ +|+.+....... ..+..++|++++. ++++++.+++.
T Consensus 319 g-~~~~~~--~~g~~~~~~~~--~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~-~~~~~~iRis~~~--~~~~l~~~l~~ 390 (412)
T 2x5d_A 319 G-WMVENP--KASMYVWAKIP--EPYAHLGSLEFAKKLLQDAKVSVSPGIGFG-DYGDDHVRFALIE--NRDRLRQAVRG 390 (412)
T ss_dssp T-CCCCCC--SBSSEEEEECC--TTTGGGCHHHHHHHHHHHHCEECEEGGGGC-GGGTTEEEEECCS--CHHHHHHHHHH
T ss_pred C-CEecCC--CeeeEEEEEcC--CccCCCCHHHHHHHHHHHCCEEEeCchhhC-CCCCCeEEEEecC--CHHHHHHHHHH
Confidence 4 776543 334 5566663 234 67889999865 699986443221 1234689999985 78899999998
Q ss_pred HHHHHHHHhcC
Q 011057 437 ITKVLHELDSL 447 (494)
Q Consensus 437 l~~~~~~l~~~ 447 (494)
|+++++++..+
T Consensus 391 l~~~l~~~~~~ 401 (412)
T 2x5d_A 391 IKAMFRADGLL 401 (412)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHhcCCc
Confidence 88888776544
No 77
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.95 E-value=2e-26 Score=230.28 Aligned_cols=338 Identities=10% Similarity=0.023 Sum_probs=229.9
Q ss_pred cCCChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHH
Q 011057 65 TTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNK 144 (494)
Q Consensus 65 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~ 144 (494)
.++.+|.+.+++.+.+...... ..+ ...++++.+++++|.+ .+++|+||++|+.+++.+++..
T Consensus 8 ~~~~~~~v~~a~~~~~~~~~~~--~~~----~~~~l~~~la~~~~~~-------~v~~~~ggt~al~~~~~~~~~~---- 70 (375)
T 2fnu_A 8 EPCLDKEDKKAVLEVLNSKQLT--QGK----RSLLFEEALCEFLGVK-------HALVFNSATSALLTLYRNFSEF---- 70 (375)
T ss_dssp CCCCCHHHHHHHHHHHTSSCCS--SSH----HHHHHHHHHHHHHTCS-------EEEEESCHHHHHHHHHHHSSCC----
T ss_pred CCCCCHHHHHHHHHHHHcCccc--CCh----HHHHHHHHHHHHhCCC-------eEEEeCCHHHHHHHHHHHhccc----
Confidence 4456788999998888653322 223 3345777799999986 3899999999999888877210
Q ss_pred HHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHH
Q 011057 145 RKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLL 224 (494)
Q Consensus 145 ~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I 224 (494)
. ..+++|+++.++|.++..++...|++++.++++++ +.+|+++|++++++++++|+++++ +|.+.|+++|
T Consensus 71 -----~-~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~l~~i 140 (375)
T 2fnu_A 71 -----S-ADRNEIITTPISFVATANMLLESGYTPVFAGIKND-GNIDELALEKLINERTKAIVSVDY---AGKSVEVESV 140 (375)
T ss_dssp -----C-TTSCEEEECSSSCTHHHHHHHHTTCEEEECCBCTT-SSBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHH
T ss_pred -----C-CCCCEEEECCCccHhHHHHHHHCCCEEEEeccCCC-CCCCHHHHHhhcCcCceEEEEeCC---cCCccCHHHH
Confidence 0 01258999999999999999999999999999875 479999999999888888877766 8999999999
Q ss_pred HHHHHHhhcccCCCceEEEecccccccccccCCccccccc-CCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccccc
Q 011057 225 NDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFR-LPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFH 303 (494)
Q Consensus 225 ~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~ 303 (494)
.++|+++ |+++++|++|+.+..+. . . .++ ...++++++++||++ ++ |+|++++++...+.+.+...
T Consensus 141 ~~l~~~~------~~~li~D~a~~~~~~~~--~--~-~~~~~~~i~~~s~s~~K~~-~~-g~g~~~~~~~~~~~~~~~~~ 207 (375)
T 2fnu_A 141 QKLCKKH------SLSFLSDSSHALGSEYQ--N--K-KVGGFALASVFSFHAIKPI-TT-AEGGAVVTNDSELHEKMKLF 207 (375)
T ss_dssp HHHHHHH------TCEEEEECTTCTTCEET--T--E-ETTSSSSEEEEECCTTSSS-CC-SSCEEEEESCHHHHHHHHHH
T ss_pred HHHHHHc------CCEEEEECccccCCeEC--C--e-eccccCCeEEEeCCCCCCc-cc-cCceEEEeCCHHHHHHHHHH
Confidence 9999999 99999999998764321 1 0 121 124777788888998 55 78888885422221111111
Q ss_pred cCCCCC-C-CCCcc--cccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecC----CCccE
Q 011057 304 INYLGA-D-QPTFT--LNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKD----EGVPL 375 (494)
Q Consensus 304 ~~y~~~-~-~~~~~--~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~----~~~~~ 375 (494)
..+... . ...+. ..+.......+. +++.....+++++..++..++++++.+.|++++++++..++ ....+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 285 (375)
T 2fnu_A 208 RSHGMLKKDFFEGEVKSIGHNFRLNEIQ--SALGLSQLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHL 285 (375)
T ss_dssp TBTTEEESSSSCEEESSCCCBCCCCHHH--HHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSC
T ss_pred HhcCCccccccccccccccccCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEE
Confidence 000000 0 00000 001110111221 22222234567788899999999999999999778877542 12234
Q ss_pred EEEEecCCCCC-CHHHHHHHHHhcCceeeccccCCCC------------------CCceEEEEEeccCCChHHHHHHHHH
Q 011057 376 VAFSLKDNKRH-DEFEVAELLRRFGWIVPAYTMPADA------------------QHITVLRVVIREDFSRTLAERLVLD 436 (494)
Q Consensus 376 v~f~~~~~~~~-~~~~l~~~L~~~Gi~v~~~~~~~~~------------------~~~~~lRvs~~~~~t~~~id~~i~~ 436 (494)
+.+.++. .+. +..++.++|.++||.++....|... ....++|++++..+|.++++++++.
T Consensus 286 ~~~~~~~-~~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~ 364 (375)
T 2fnu_A 286 YPILMHQ-KFFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHS 364 (375)
T ss_dssp EEEEECG-GGGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHH
T ss_pred EEEEeCc-cccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHH
Confidence 4556642 123 5788999999999998632222110 0126899999999999999999999
Q ss_pred HHHHHHHHh
Q 011057 437 ITKVLHELD 445 (494)
Q Consensus 437 l~~~~~~l~ 445 (494)
|+++++.++
T Consensus 365 l~~~~~~~~ 373 (375)
T 2fnu_A 365 VLKTFESFK 373 (375)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999887653
No 78
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.95 E-value=1.3e-26 Score=232.61 Aligned_cols=337 Identities=13% Similarity=0.044 Sum_probs=231.6
Q ss_pred CCCCCccccccc-C-CChHHHHHHHHHHhcccCCCC--CCCh-hhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhH
Q 011057 54 GNPRLNLASFVT-T-WMEPECDKLMMAAINKNYVDM--DEYP-VTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSE 128 (494)
Q Consensus 54 ~~~~~~~~~~~~-~-~~~p~~~~~~~~~~~~~~~~~--~~~~-~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~ 128 (494)
++.++++.++.. + +++|.+.+++.+.+......+ ..++ +......++++.+++++|.+. .+++++|++
T Consensus 38 g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~-------~i~~~sGt~ 110 (384)
T 1bs0_A 38 DRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSR-------ALLFISGFA 110 (384)
T ss_dssp TEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSE-------EEEESCHHH
T ss_pred CceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCCc-------EEEeCCcHH
Confidence 444455555432 2 356788888888876522111 1121 233555667888999999853 666777799
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhC---CeE
Q 011057 129 AIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDEN---TIC 205 (494)
Q Consensus 129 a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~---t~~ 205 (494)
++..++.++.. .++.|+++.+.|.++..+++..|++++.+|. +|+++|++++++. +++
T Consensus 111 a~~~~~~~~~~-------------~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~~~ 171 (384)
T 1bs0_A 111 ANQAVIAAMMA-------------KEDRIAADRLSHASLLEAASLSPSQLRRFAH------NDVTHLARLLASPCPGQQM 171 (384)
T ss_dssp HHHHHHHHHCC-------------TTCEEEEETTCCHHHHHHHHTSSSEEEEECT------TCHHHHHHHHHSCCSSCEE
T ss_pred HHHHHHHHhCC-------------CCcEEEEcccccHHHHHHHHHcCCCEEEeCC------CCHHHHHHHHHhcCCCCeE
Confidence 99988776522 1257899999999999999999999988873 5789999998763 778
Q ss_pred EEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCce
Q 011057 206 VAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGI 285 (494)
Q Consensus 206 vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~ 285 (494)
|++++++||||.+.|+++|.++|+++ ++++++|++|+.+..+.........++ .+.|++..++||++. |.|
T Consensus 172 v~~~~~~nptG~~~~l~~i~~l~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~-~~~di~~~s~sK~~~-~~G- 242 (384)
T 1bs0_A 172 VVTEGVFSMDGDSAPLAEIQQVTQQH------NGWLMVDDAHGTGVIGEQGRGSCWLQK-VKPELLVVTFGKGFG-VSG- 242 (384)
T ss_dssp EEEESBCTTTCCBCCHHHHHHHHHHT------TCEEEEECTTTTTTSSGGGCCHHHHTT-CCCSEEEEESSSTTS-SCC-
T ss_pred EEEeCCCCCCCCccCHHHHHHHHHHc------CcEEEEECCcccceecCCCCchHHhcC-CCCcEEEeeccchhh-ccC-
Confidence 88888999999999999999999999 999999999986542100010111122 257899999999986 566
Q ss_pred EEEEEeCCCCcccccccc-cCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCe
Q 011057 286 GWVIWRNKEDLPEELIFH-INYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRF 364 (494)
Q Consensus 286 G~~~~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~ 364 (494)
|++++++ ..+ +.+... ..|. ..++.+.....++.++++.+.....++..++..++++++.+.|++++ +
T Consensus 243 G~~~~~~-~~~-~~l~~~~~~~~--------~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~ 311 (384)
T 1bs0_A 243 AAVLCSS-TVA-DYLLQFARHLI--------YSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLP-F 311 (384)
T ss_dssp EEEEECH-HHH-HHHHHHCHHHH--------SSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSS-C
T ss_pred cEEEeCH-HHH-HHHHHhchhhh--------cCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 8887753 222 211111 1111 01123334444455566655322456788889999999999999985 8
Q ss_pred EEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHH
Q 011057 365 NIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKV 440 (494)
Q Consensus 365 ~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~ 440 (494)
++.. + ..+++.+.++. +.+..++.++|.++|+.+.....+....+..++|++++..++.++++++++.|+++
T Consensus 312 ~~~~-~-~~~~~~~~~~~--~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 312 TLAD-S-CSAIQPLIVGD--NSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp EECS-C-CSSBCCEEEES--HHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred cccC-C-CCCEEEEEeCC--HHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 7763 2 45677777642 23567899999999999865544432234578999999888999999988888764
No 79
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.95 E-value=2.6e-26 Score=229.39 Aligned_cols=338 Identities=12% Similarity=0.044 Sum_probs=234.7
Q ss_pred cCCCCCcccccccCC-ChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHH
Q 011057 53 DGNPRLNLASFVTTW-MEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIM 131 (494)
Q Consensus 53 ~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~ 131 (494)
.++..++|..+.++. +++.+.+++.+.++.....|...++..++++.+.+++.+.+|.+.+ ...+++|+|+++|+.
T Consensus 27 ~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~---~~~v~~~~g~~~a~~ 103 (370)
T 2z61_A 27 EGKKVIHLEIGEPDFNTPKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADII---PDNIIITGGSSLGLF 103 (370)
T ss_dssp TTCCCEECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCC---GGGEEEESSHHHHHH
T ss_pred cCCCEEEccCCCCCCCCCHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCC---hhhEEECCChHHHHH
Confidence 345555566655543 4677888888887654444555557788999988888887776542 246999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeC
Q 011057 132 LAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILG 211 (494)
Q Consensus 132 ~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~ 211 (494)
+++.++..+ +++|+++.++|.++...++..|++++.++ +|+++|++++++++++|+++++
T Consensus 104 ~~~~~~~~~-------------gd~vl~~~p~~~~~~~~~~~~g~~~~~v~-------~d~~~l~~~l~~~~~~v~~~~p 163 (370)
T 2z61_A 104 FALSSIIDD-------------GDEVLIQNPCYPCYKNFIRFLGAKPVFCD-------FTVESLEEALSDKTKAIIINSP 163 (370)
T ss_dssp HHHHHHCCT-------------TCEEEEESSCCTHHHHHHHHTTCEEEEEC-------SSHHHHHHHCCSSEEEEEEESS
T ss_pred HHHHHhcCC-------------CCEEEEeCCCchhHHHHHHHcCCEEEEeC-------CCHHHHHHhcccCceEEEEcCC
Confidence 888877321 25899999999999999999999988887 6899999999888889999999
Q ss_pred CCCcccccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccc-cCCCceEEEEcCcccCC-cCCceEEEE
Q 011057 212 STLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDF-RLPLVKSINVSGHKYGL-VYAGIGWVI 289 (494)
Q Consensus 212 ~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~hK~l~-~p~g~G~~~ 289 (494)
+||||.+.|++ |.++|+++ ++++++|++|+.+...- .+.....+ ...+.|++..++||++. ++.++|+++
T Consensus 164 ~nptG~~~~~~-l~~~~~~~------~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~ 235 (370)
T 2z61_A 164 SNPLGEVIDRE-IYEFAYEN------IPYIISDEIYNGLVYEG-KCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVI 235 (370)
T ss_dssp CTTTCCCCCHH-HHHHHHHH------CSEEEEECTTTTCBSSS-CCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEE
T ss_pred CCCcCcccCHH-HHHHHHHc------CCEEEEEcchhhcccCC-CCcCHHHccCCCCcEEEEecChhccCCccceEEEEE
Confidence 99999999999 99999999 99999999999764310 00000111 13467899999999985 444589988
Q ss_pred EeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeec
Q 011057 290 WRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSK 369 (494)
Q Consensus 290 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~ 369 (494)
++++ .. +.+....... .++.+.....++.++++.++.+.+++..+++.++++++.+.|+++ ++++..+
T Consensus 236 ~~~~-~~-~~~~~~~~~~---------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 303 (370)
T 2z61_A 236 SNDE-II-EAILKLQQNL---------FISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF-GWEVNNP 303 (370)
T ss_dssp CCHH-HH-HHHHHHHHHH---------TSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCCCC
T ss_pred ECHH-HH-HHHHHHHhhc---------ccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCC
Confidence 7552 22 2111100000 012222222222233332135566778888899999999999998 4776543
Q ss_pred CCCccE-EEEEecCCCCCCHHHHHHHHH-hcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHH
Q 011057 370 DEGVPL-VAFSLKDNKRHDEFEVAELLR-RFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLH 442 (494)
Q Consensus 370 ~~~~~~-v~f~~~~~~~~~~~~l~~~L~-~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~ 442 (494)
..++ +.+.+.. +..++.++|. ++|+.+....... ..+..++|++++ +++++++.+++.|+++++
T Consensus 304 --~~~~~~~~~~~~----~~~~~~~~l~~~~gi~v~~g~~f~-~~~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 304 --IGAYYVFPNIGE----DGREFAYKLLKEKFVALTPGIGFG-SKGKNYIRISYA--NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp --CBTTEECCBCSS----CHHHHHHHHHHHHCEECEEGGGGC-GGGSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred --CcceEEEEecCC----CHHHHHHHHHHhCCEEEeCchhhC-CCCCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 2344 4445532 6778999997 7899885433221 113457999998 588889888888877653
No 80
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.95 E-value=3.7e-26 Score=229.58 Aligned_cols=342 Identities=13% Similarity=0.041 Sum_probs=236.1
Q ss_pred CCcccccccC-CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCc-ceeeecChhHHHHHHH
Q 011057 57 RLNLASFVTT-WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETA-VGVGTVGSSEAIMLAG 134 (494)
Q Consensus 57 ~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~-~~~~t~ggt~a~~~a~ 134 (494)
.++|..+.+. .++|.+.+++.+.++.....|...++..++++++.+++.+.+|.+.+ .. .+++|+|+++|+.+++
T Consensus 32 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~---~~~~v~~~~g~~~a~~~~~ 108 (386)
T 1u08_A 32 AINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPD---ADSDITVTAGATEALYAAI 108 (386)
T ss_dssp CEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCC---TTTTEEEESSHHHHHHHHH
T ss_pred eEEecCCCCCCCCCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCC---CCCCEEEcCChHHHHHHHH
Confidence 3444554443 34678889888887653334555556889999999999998887532 13 5899999999999888
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCC
Q 011057 135 LAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTL 214 (494)
Q Consensus 135 ~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~ 214 (494)
.++..+ +++|+++.++|..+...++..|++++.++++++++.+|+++|++++++++++|++++++||
T Consensus 109 ~~~~~~-------------gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~np 175 (386)
T 1u08_A 109 TALVRN-------------GDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNP 175 (386)
T ss_dssp HHHCCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTT
T ss_pred HHhCCC-------------CCEEEEeCCCchhHHHHHHHcCCEEEEeecCcccCcCCHHHHHHhhcccCEEEEEeCCCCC
Confidence 876221 2589999999999999999999999999997644789999999999888899999999999
Q ss_pred cccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcc-cc-ccc-CCCceEEEEcCcccCC-cCCceEE
Q 011057 215 NGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPEL-EW-DFR-LPLVKSINVSGHKYGL-VYAGIGW 287 (494)
Q Consensus 215 tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~-~~~-~~~~D~~~~~~hK~l~-~p~g~G~ 287 (494)
||.+.| +++|.++|+++ ++++++|++|+.+.. ..... .. .+. ..+.|++..+++|++. ++.++|+
T Consensus 176 tG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~ 247 (386)
T 1u08_A 176 SATVWQQADFAALWQAIAGH------EIFVISDEVYEHINF--SQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGY 247 (386)
T ss_dssp TCCCCCHHHHHHHHHHHTTS------CCEEEEECTTTTCBC--CSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEE
T ss_pred CCccCCHHHHHHHHHHHHHc------CcEEEEEcccccccc--CCCCCcChhcccCccCcEEEEecchhhcCCcccceEE
Confidence 999975 68899999999 999999999987532 11100 00 111 1357899999999985 4455899
Q ss_pred EEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEe
Q 011057 288 VIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIV 367 (494)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 367 (494)
+++++. .. +.+.....+. .++.+.....++.++++.. .+.+++..++..++++++.+.|++++ +++.
T Consensus 248 ~~~~~~-~~-~~l~~~~~~~---------~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~ 314 (386)
T 1u08_A 248 CVAPAP-IS-AEIRKVHQYL---------TFSVNTPAQLALADMLRAE-PEHYLALPDFYRQKRDILVNALNESR-LEIL 314 (386)
T ss_dssp EECCHH-HH-HHHHHHHHHH---------TSSCCHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHHTTSSS-CEEC
T ss_pred EEcCHH-HH-HHHHHHHHhh---------ccCCChHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHCC-Ceec
Confidence 887532 22 2211111000 0122223333344444433 45677888889999999999999984 8876
Q ss_pred ecCCCccEEEEEecCCCCCCHHHHHHHHH-hcCceeeccc-cCCCCCCceEEEEEeccCCChHHHHHHHHHHH
Q 011057 368 SKDEGVPLVAFSLKDNKRHDEFEVAELLR-RFGWIVPAYT-MPADAQHITVLRVVIREDFSRTLAERLVLDIT 438 (494)
Q Consensus 368 ~~~~~~~~v~f~~~~~~~~~~~~l~~~L~-~~Gi~v~~~~-~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~ 438 (494)
.+. ...++.+.+......+..++.++|. ++|+.+.... +.....+..++|+++. .++++++++++.|+
T Consensus 315 ~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~--~~~~~i~~~~~~l~ 384 (386)
T 1u08_A 315 PCE-GTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA--KKESTLLAAAERLR 384 (386)
T ss_dssp CCC-BSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC--SCHHHHHHHHHHHT
T ss_pred CCC-ceEEEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEc--CCHHHHHHHHHHHh
Confidence 543 3456777774311146788999886 6799885432 2111124568999997 36777776665553
No 81
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.95 E-value=5.6e-26 Score=227.83 Aligned_cols=336 Identities=13% Similarity=0.033 Sum_probs=231.6
Q ss_pred CcccccccC-CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHH
Q 011057 58 LNLASFVTT-WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLA 136 (494)
Q Consensus 58 ~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a 136 (494)
++|..+.+. ++++.+.+++.++++. ...|...++..+ +++.+++++|.++ ..+++|+||++|+.+++.+
T Consensus 28 i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~y~~~~~~~~----l~~~la~~~~~~~-----~~v~~~~g~~~a~~~~~~~ 97 (381)
T 1v2d_A 28 VNLGQGFPSNPPPPFLLEAVRRALGR-QDQYAPPAGLPA----LREALAEEFAVEP-----ESVVVTSGATEALYVLLQS 97 (381)
T ss_dssp EECCCCSCSSCCCHHHHHHHHHHTTT-SCSCCCTTCCHH----HHHHHHHHHTSCG-----GGEEEESSHHHHHHHHHHH
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHH-hcCCCCCCCCHH----HHHHHHHhcCCCh-----hhEEEcCChHHHHHHHHHH
Confidence 344444333 3467888999888865 233433334444 4555888888864 3489999999999988887
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEecc--CCccccCHHHHHHhhhhCCeEEEEeeCCCC
Q 011057 137 FKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLS--EGYYVMDPVKAVEMVDENTICVAAILGSTL 214 (494)
Q Consensus 137 ~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~--~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~ 214 (494)
+.. .+++|+++.++|.++...++..|++++.++++ ++++.+|+++|++++++++++|++++++|+
T Consensus 98 ~~~-------------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~np 164 (381)
T 1v2d_A 98 LVG-------------PGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNP 164 (381)
T ss_dssp HCC-------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTT
T ss_pred hCC-------------CCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcCcCCEEEEECCCCCC
Confidence 732 12589999999999999999999999999987 334789999999999888899999999999
Q ss_pred cccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCccc-ccccCCCceEEEEcCcccCC-cCCceEEEE
Q 011057 215 NGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELE-WDFRLPLVKSINVSGHKYGL-VYAGIGWVI 289 (494)
Q Consensus 215 tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~hK~l~-~p~g~G~~~ 289 (494)
||.+.| +++|.++|+++ |+++++|++|+++.. ...... ..+ ..+.|++..++||++. ++.++|+++
T Consensus 165 tG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--g~~~~~~~~~-~~~~~~~~~s~sK~~~~~G~r~G~~~ 235 (381)
T 1v2d_A 165 TGLVFGERELEAIARLARAH------DLFLISDEVYDELYY--GERPRRLREF-APERTFTVGSAGKRLEATGYRVGWIV 235 (381)
T ss_dssp TCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBS--SSCCCCHHHH-CTTTEEEEEEHHHHTTCGGGCCEEEE
T ss_pred CCCccCHHHHHHHHHHHHHc------CCEEEEEcCcccccc--CCCCCCHHHh-cCCCEEEEeechhhcCCcccceEEEE
Confidence 999865 89999999999 999999999987642 111000 111 3468999999999875 445589988
Q ss_pred EeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhc-HhHHHHHHHHHHHHHHHHHHHHhhCCCeEEee
Q 011057 290 WRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG-FEGYRNVMENCHENAMVLKEGLEKTGRFNIVS 368 (494)
Q Consensus 290 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~ 368 (494)
++++ .+ +.+.....+. .++.+.....++.++++... .+++++..++..++++++.+.|++.+ +++..
T Consensus 236 ~~~~-~~-~~~~~~~~~~---------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~ 303 (381)
T 1v2d_A 236 GPKE-FM-PRLAGMRQWT---------SFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMG-LRVYV 303 (381)
T ss_dssp CCTT-TH-HHHHHHHHHH---------TSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTT-CCEEC
T ss_pred eCHH-HH-HHHHHHHhhc---------ccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHCC-CEecC
Confidence 7543 32 2211111100 11222233334444554332 45677888899999999999999974 88765
Q ss_pred cCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCC-CCCceEEEEEeccCCChHHHHHHHHHHHHHHHHHhc
Q 011057 369 KDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPAD-AQHITVLRVVIREDFSRTLAERLVLDITKVLHELDS 446 (494)
Q Consensus 369 ~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~-~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~~ 446 (494)
+. ...++.+.+... + +.+.|.++|+.+........ ..+..++|++++. +.++++++++.|+++++..++
T Consensus 304 ~~-~~~~~~~~~~~~---~---~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~~r~ 373 (381)
T 1v2d_A 304 PE-GTYFLMAELPGW---D---AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK--TEEELHLALERLGRVVNSPRE 373 (381)
T ss_dssp CS-BSSEEEEECTTC---C---HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS--CHHHHHHHHHHHHHHC-----
T ss_pred CC-cceEEEEecChH---h---HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC--CHHHHHHHHHHHHHHHhhccc
Confidence 43 344666776432 2 77778899999854332211 1235689999875 888999999999888776654
No 82
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.95 E-value=4e-26 Score=229.53 Aligned_cols=334 Identities=11% Similarity=0.025 Sum_probs=224.9
Q ss_pred hHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhc
Q 011057 69 EPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAE 148 (494)
Q Consensus 69 ~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~ 148 (494)
.|.+.+++.++++.....+...+...+ +++.+++++|.+. .+++++||+|+.+++.++..
T Consensus 16 ~~~~~~a~~~~l~~~~~~~~~~~~~~~----l~~~la~~~~~~~-------~i~~~sGt~al~~~l~~l~~--------- 75 (388)
T 1b9h_A 16 DDAERNGLVRALEQGQWWRMGGDEVNS----FEREFAAHHGAAH-------ALAVTNGTHALELALQVMGV--------- 75 (388)
T ss_dssp CHHHHHHHHHHHHTSCCBTTTCSHHHH----HHHHHHHHTTCSE-------EEEESCHHHHHHHHHHHTTC---------
T ss_pred CHHHHHHHHHHHHcCCeeecCCHHHHH----HHHHHHHHhCCCe-------EEEeCCHHHHHHHHHHHcCC---------
Confidence 478888888888764222333344444 5566889998863 44555569999988877611
Q ss_pred CCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHHH
Q 011057 149 GKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLL 228 (494)
Q Consensus 149 g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~la 228 (494)
..+++|+++.++|.++..+++..|++++.++++++++.+|+++|++++++++++|+ ++|+||.+.|+++|.++|
T Consensus 76 ---~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~la 149 (388)
T 1b9h_A 76 ---GPGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIM---PVHMAGLMADMDALAKIS 149 (388)
T ss_dssp ---CTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHH
T ss_pred ---CCcCEEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCcCceEEE---EeCCccCcCCHHHHHHHH
Confidence 01258999999999999999999999999999865578999999999988877765 889999999999999999
Q ss_pred HHhhcccCCCceEEEecccccccccccCCccccccc-CCCceEEEEcCcccCCcCCceEEEEEeCCCC--cccccccccC
Q 011057 229 AEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFR-LPLVKSINVSGHKYGLVYAGIGWVIWRNKED--LPEELIFHIN 305 (494)
Q Consensus 229 ~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~--~~~~~~~~~~ 305 (494)
+++ |+++|+|++|+.+..+ ... ++. ...+++++++.||++.++ .+|+++++++.. +.. +.....
T Consensus 150 ~~~------~~~li~D~a~~~g~~~--~~~---~~~~~~~i~~~S~s~~K~l~g~-~~G~~~~~~~~~~~~~~-~~~~~~ 216 (388)
T 1b9h_A 150 ADT------GVPLLQDAAHAHGARW--QGK---RVGELDSIATFSFQNGKLMTAG-EGGAVVFPDGETEKYET-AFLRHS 216 (388)
T ss_dssp HHH------TCCBCEECTTCTTCEE--TTE---EGGGSSSCEEEECCTTSSSCSS-SCEEEEECTTCHHHHHH-HHHHTB
T ss_pred HHc------CCEEEEecchhcCCcc--CCe---ecccccceEEEEccCCCcccCC-CeEEEEECCHHHHHHHH-HHHHHh
Confidence 999 9999999999865431 110 111 124788888899998665 568887766433 211 111111
Q ss_pred CCCCC-CCCc--ccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecC-----CCccEEE
Q 011057 306 YLGAD-QPTF--TLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKD-----EGVPLVA 377 (494)
Q Consensus 306 y~~~~-~~~~--~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-----~~~~~v~ 377 (494)
+.... ...+ ...++......+..++.+.. .+.+++..++..++++++.+.|++++++++..+. ...+++.
T Consensus 217 ~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~--~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 294 (388)
T 1b9h_A 217 CGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQ--LARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAM 294 (388)
T ss_dssp TTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEE
T ss_pred CCCCccCccceeecccccCCcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEE
Confidence 10000 0000 00011110112222222222 2345667788888999999999999778876531 1356788
Q ss_pred EEecCCCCCCHHHHHHHHHhcCceeeccccCCCCC--------------------------CceEEEEEeccCC-ChHHH
Q 011057 378 FSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQ--------------------------HITVLRVVIREDF-SRTLA 430 (494)
Q Consensus 378 f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~--------------------------~~~~lRvs~~~~~-t~~~i 430 (494)
+.+++..+.+..++.++|.++||.++....|.... ....+|++++..+ |.+|+
T Consensus 295 ~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi 374 (388)
T 1b9h_A 295 FRIPGLTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPEL 374 (388)
T ss_dssp EECTTCCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHH
T ss_pred EEeCCcCcccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHH
Confidence 88753111246789999999999986543331000 0247999999999 99999
Q ss_pred HHHHHHHHHHHHH
Q 011057 431 ERLVLDITKVLHE 443 (494)
Q Consensus 431 d~~i~~l~~~~~~ 443 (494)
+++++.|++++++
T Consensus 375 ~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 375 HATAEIIADAVAR 387 (388)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988753
No 83
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.95 E-value=3e-26 Score=228.63 Aligned_cols=327 Identities=13% Similarity=0.113 Sum_probs=228.6
Q ss_pred CcccccccC-CChHHHHHHHHHHhccc-CCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHH
Q 011057 58 LNLASFVTT-WMEPECDKLMMAAINKN-YVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGL 135 (494)
Q Consensus 58 ~~~~~~~~~-~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~ 135 (494)
++|....+. +++|.+.+++.+.+... ...|.. ++. .++++++++++|.+. ...+++|+|+++|+.+++.
T Consensus 33 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-~~~----~~l~~~la~~~g~~~----~~~i~~~~g~t~a~~~~~~ 103 (367)
T 3euc_A 33 VKLDAMENPYRLPPALRSELAARLGEVALNRYPV-PSS----EALRAKLKEVMQVPA----GMEVLLGNGSDEIISMLAL 103 (367)
T ss_dssp EECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCC-CCH----HHHHHHHHHHHTCCT----TCEEEEEEHHHHHHHHHHH
T ss_pred eEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC-CcH----HHHHHHHHHHhCCCC----cceEEEcCCHHHHHHHHHH
Confidence 455555443 34678888888877642 233322 333 346677899999832 1359999999999998887
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhh-CCeEEEEeeCCCC
Q 011057 136 AFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDE-NTICVAAILGSTL 214 (494)
Q Consensus 136 a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~t~~vv~~~~~~~ 214 (494)
++.. .+++|+++.++|..+...++..|++++.++++++ +.+|+++|++++++ ++++|++++++||
T Consensus 104 ~~~~-------------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~v~~~~~~np 169 (367)
T 3euc_A 104 AAAR-------------PGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRAD-FTLDRGAMLAAMAEHQPAIVYLAYPNNP 169 (367)
T ss_dssp HTCC-------------TTCEEEEEESCSCCSCHHHHTTTCEEEEEECCTT-SCCCHHHHHHHHHHHCCSEEEEESSCTT
T ss_pred HHcC-------------CCCEEEEcCCCHHHHHHHHHHcCCeEEEecCCCC-CCCCHHHHHHHhhccCCCEEEEcCCCCC
Confidence 7622 1268999999999998889999999999999874 78999999999998 8999999999999
Q ss_pred cccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEe
Q 011057 215 NGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWR 291 (494)
Q Consensus 215 tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~ 291 (494)
||.+.| +++|+++|++++ .|+++++|++|+.+.. ......+...+.+++..+++|++.++.++|+++.+
T Consensus 170 tG~~~~~~~l~~i~~~~~~~~----~~~~li~De~~~~~~~----~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~ 241 (367)
T 3euc_A 170 TGNLFDAADMEAIVRAAQGSV----CRSLVVVDEAYQPFAQ----ESWMSRLTDFGNLLVMRTVSKLGLAGIRLGYVAGD 241 (367)
T ss_dssp TCCCCCHHHHHHHHHHTBTTS----CBCEEEEECTTCCSSS----CCSGGGGGTCTTEEEEEECCCTTSCSCCEEEEEEC
T ss_pred CCCCCCHHHHHHHHHhhhhcC----CCcEEEEeCcchhhcc----cchHHHHhhCCCEEEEecchhhcccccCceeeeeC
Confidence 999955 556666666651 0489999999987531 11111223335667788899997777788998874
Q ss_pred CCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCC
Q 011057 292 NKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDE 371 (494)
Q Consensus 292 ~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~ 371 (494)
+. .. ..+..... . ++.+.....++.++++. .+.+++..++..++++++.+.|++++++++..+
T Consensus 242 ~~-~~-~~~~~~~~-------~----~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~-- 304 (367)
T 3euc_A 242 PQ-WL-EQLDKVRP-------P----YNVNVLTEATALFALEH--VAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPS-- 304 (367)
T ss_dssp HH-HH-HHHGGGCC-------S----SCCCHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHTSTTCEECCC--
T ss_pred HH-HH-HHHHHhCC-------C----CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCC--
Confidence 32 22 11111000 0 11222333333344433 455678888999999999999999977885433
Q ss_pred CccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHH
Q 011057 372 GVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVL 441 (494)
Q Consensus 372 ~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~ 441 (494)
..+++.+.+. +..++.+.|.++|+.+....... .....++|++++ ++++++++++.|++++
T Consensus 305 ~~~~~~~~~~-----~~~~l~~~l~~~gi~v~~~~~~~-~~~~~~iRis~~---~~~~i~~~~~~l~~~l 365 (367)
T 3euc_A 305 AANFLLARVP-----DAAQTFDRLLARKVLIKNVSKMH-PLLANCLRVTVS---TPEENAQFLEAFAASL 365 (367)
T ss_dssp SSSEEEEECS-----CHHHHHHHHHTTTEECEECGGGC-GGGTTEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECC-----CHHHHHHHHHHCCeEEEECCccC-CCCCCEEEEecC---CHHHHHHHHHHHHHHh
Confidence 4567777763 57889999999999986533221 123568999987 8899999999988765
No 84
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.95 E-value=1.3e-25 Score=225.71 Aligned_cols=340 Identities=16% Similarity=0.073 Sum_probs=231.8
Q ss_pred CCCCCcccccccCC-ChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHH
Q 011057 54 GNPRLNLASFVTTW-MEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIML 132 (494)
Q Consensus 54 ~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~ 132 (494)
+...++|..+.+.. +++.+.+++.+.+......|....+..++++.+.+++.+.+|.+.+ ...+++|+|+++|+.+
T Consensus 30 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~---~~~i~~t~g~~~al~~ 106 (385)
T 1b5p_A 30 GVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVT---PEETIVTVGGSQALFN 106 (385)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCC---GGGEEEESHHHHHHHH
T ss_pred CCCEEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC---hHHEEEcCChHHHHHH
Confidence 34445566655543 3567888888777654444544456788999988888888886532 2458999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccC-CccccCHHHHHHhhhhCCeEEEEeeC
Q 011057 133 AGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSE-GYYVMDPVKAVEMVDENTICVAAILG 211 (494)
Q Consensus 133 a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~t~~vv~~~~ 211 (494)
++.++.. .+++|+++.++|..+...++..|++++.+++++ +++.+|+++|++++++++++|+++++
T Consensus 107 ~~~~l~~-------------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p 173 (385)
T 1b5p_A 107 LFQAILD-------------PGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSP 173 (385)
T ss_dssp HHHHHCC-------------TTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESS
T ss_pred HHHHhcC-------------CCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeCC
Confidence 8887732 126899999999999999999999999999975 34789999999999888999999999
Q ss_pred CCCcccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCccc-ccccCCCceEEEEcCcccCC-cCCceE
Q 011057 212 STLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELE-WDFRLPLVKSINVSGHKYGL-VYAGIG 286 (494)
Q Consensus 212 ~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~hK~l~-~p~g~G 286 (494)
+||||.+.+ +++|+++|+++ ++++++|++|+.+.. ..+... ..+.. ..+++..+++|++. ++.++|
T Consensus 174 ~NPtG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--~~~~~~~~~~~~-~~~i~~~s~SK~~~~~G~RiG 244 (385)
T 1b5p_A 174 NNPTGAVYPKEVLEALARLAVEH------DFYLVSDEIYEHLLY--EGEHFSPGRVAP-EHTLTVNGAAKAFAMTGWRIG 244 (385)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBS--SSCCCCGGGTCT-TTEEEEEESTTTTTCGGGCCE
T ss_pred CCCCCCCcCHHHHHHHHHHHHHc------CCEEEEEccchhccc--CCCCCCHHHcCC-CCEEEEEechhhcCCcccceE
Confidence 999999855 89999999999 999999999987642 111000 11111 45777888999875 455689
Q ss_pred EEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHh-----cHhHHHHHHHHHHHHHHHHHHHHhhC
Q 011057 287 WVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRL-----GFEGYRNVMENCHENAMVLKEGLEKT 361 (494)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l-----~~~g~~~~~~~~~~~a~~l~~~L~~~ 361 (494)
++++++. .+ ..+.....+. + .+. +.+.++++...+ +.+.+++..+++.++++++.+.|+++
T Consensus 245 ~~~~~~~-~~-~~l~~~~~~~-------~--~~~---~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 310 (385)
T 1b5p_A 245 YACGPKE-VI-KAMASVSRQS-------T--TSP---DTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL 310 (385)
T ss_dssp EEECCHH-HH-HHHHHHHHTT-------T--CSC---CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCHH-HH-HHHHHHHhhc-------c--CCC---CHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9987432 22 1111110000 0 111 122333333333 24456777888888999999999988
Q ss_pred CCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHH
Q 011057 362 GRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKV 440 (494)
Q Consensus 362 ~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~ 440 (494)
++++..+. ...++...+.. .+.+..++.++|.++|+.+........ ..++|++++ ++.+++++.++.|+++
T Consensus 311 -g~~~~~~~-~~~~~~~~~~~-~~~~~~~l~~~l~~~gv~v~~g~~f~~---~~~iRis~~--~~~~~i~~~l~~l~~~ 381 (385)
T 1b5p_A 311 -GLKAVRPS-GAFYVLMDTSP-IAPDEVRAAERLLEAGVAVVPGTDFAA---FGHVRLSYA--TSEENLRKALERFARV 381 (385)
T ss_dssp -TCCBCCCS-BTTEEEEECTT-TCSSHHHHHHHHHHTTEECEESGGGTC---TTEEEEECC--SCHHHHHHHHHHGGGG
T ss_pred -CCeecCCC-eeEEEEEecCC-CCCCHHHHHHHHHHCCeEEecccccCC---CCeEEEEec--CCHHHHHHHHHHHHHH
Confidence 57765443 22344445531 235788999999999998754332211 357999987 5676666555555443
No 85
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.95 E-value=1.3e-25 Score=227.87 Aligned_cols=352 Identities=14% Similarity=0.030 Sum_probs=240.1
Q ss_pred CCccccccc-----CCChHHHHHHHHHHhcccC-CCCCCChhhHHHHHHHHHHHHHH------hCCCCCCCCCcceeeec
Q 011057 57 RLNLASFVT-----TWMEPECDKLMMAAINKNY-VDMDEYPVTTELQNRCVNIIARL------FNAPLEDSETAVGVGTV 124 (494)
Q Consensus 57 ~~~~~~~~~-----~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~le~~~~~~la~l------~g~~~~~~~~~~~~~t~ 124 (494)
.++|..+.+ .++++.+.+++.+.+.... ..|....+..++++.+.+++.+. .|.+. +...+++|+
T Consensus 35 ~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~---~~~~v~~~~ 111 (416)
T 1bw0_A 35 IIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTI---VKDNVVLCS 111 (416)
T ss_dssp CEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGC---CGGGEEEES
T ss_pred eEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCC---CcceEEEeC
Confidence 345555442 3456788888888876532 33444456778887777777632 23222 124589999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCC-ccccCHHHHHHhhhhCC
Q 011057 125 GSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEG-YYVMDPVKAVEMVDENT 203 (494)
Q Consensus 125 ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~~i~~~t 203 (494)
|+++|+.+++.++..+ +++|+++.++|..+..+++..|++++.++++++ ++.+|+++|++++++++
T Consensus 112 g~~~al~~~~~~l~~~-------------gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 178 (416)
T 1bw0_A 112 GGSHGILMAITAICDA-------------GDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKT 178 (416)
T ss_dssp HHHHHHHHHHHHHCCT-------------TCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTE
T ss_pred ChHHHHHHHHHHhCCC-------------CCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhccCC
Confidence 9999999888877321 268999999999999999999999999998643 36799999999998888
Q ss_pred eEEEEeeCCCCcccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCC----ccc--ccccCCCceEEEEc
Q 011057 204 ICVAAILGSTLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYP----ELE--WDFRLPLVKSINVS 274 (494)
Q Consensus 204 ~~vv~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~----~~~--~~~~~~~~D~~~~~ 274 (494)
++|++++++||||.+.| +++|.++|+++ |+++++|++|+.+.. ... ... ..+.....+.+..+
T Consensus 179 ~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~~~~~i~~~s 250 (416)
T 1bw0_A 179 KLLIVTNPSNPCGSNFSRKHVEDIVRLAEEL------RLPLFSDEIYAGMVF--KGKDPNATFTSVADFETTVPRVILGG 250 (416)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCCEEEECTTTTCBC--CSSCTTCCCCCTTSSCCSCCEEEEEE
T ss_pred eEEEEeCCCCCCCcccCHHHHHHHHHHHHHc------CCEEEEEcccccccc--CCCCCCCCccCHHHccCCCcEEEEec
Confidence 99999999999999988 99999999999 999999999987532 111 011 01111123466778
Q ss_pred CcccC-CcCCceEEEEEeCC-CCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHH
Q 011057 275 GHKYG-LVYAGIGWVIWRNK-EDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAM 352 (494)
Q Consensus 275 ~hK~l-~~p~g~G~~~~~~~-~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~ 352 (494)
++|++ +++.++|+++++++ ..+.........+. ...++.+.....++.++++....+++++..++..++++
T Consensus 251 ~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 323 (416)
T 1bw0_A 251 TAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVG-------MLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAM 323 (416)
T ss_dssp STTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHH-------HHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred chhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHh-------ccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 99996 44567899998775 33211110000000 00122223334444445554456778888899999999
Q ss_pred HHHHHHhhCCCeEEeecCCCccEEEEEecCC---CCCCHHHHHHHH-HhcCceeeccccCCCCCCceEEEEEeccCCChH
Q 011057 353 VLKEGLEKTGRFNIVSKDEGVPLVAFSLKDN---KRHDEFEVAELL-RRFGWIVPAYTMPADAQHITVLRVVIREDFSRT 428 (494)
Q Consensus 353 ~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~---~~~~~~~l~~~L-~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~ 428 (494)
++.+.|++++++++..+. ...++.+.++.. ...+..++.++| .++|+.+....... ...++|++++ .+++
T Consensus 324 ~l~~~L~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~---~~~~iRis~~--~~~e 397 (416)
T 1bw0_A 324 YLYNHIGECIGLAPTMPR-GAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFH---APGFTRLTTT--RPVE 397 (416)
T ss_dssp HHHHHHTTSTTEEECCCC-BTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGT---CTTEEEEECC--SCHH
T ss_pred HHHHHHHhCCCCcccCCC-eeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccC---CCCeEEEEec--CCHH
Confidence 999999998778876443 355666676421 124677888888 48899885433221 1357999995 5788
Q ss_pred HHHHHHHHHHHHHHHHh
Q 011057 429 LAERLVLDITKVLHELD 445 (494)
Q Consensus 429 ~id~~i~~l~~~~~~l~ 445 (494)
+++..++.|++++++.+
T Consensus 398 ~l~~~l~~l~~~l~~~~ 414 (416)
T 1bw0_A 398 VYREAVERIKAFCQRHA 414 (416)
T ss_dssp HHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 89988888888877654
No 86
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.95 E-value=2.3e-26 Score=229.02 Aligned_cols=328 Identities=15% Similarity=0.067 Sum_probs=228.9
Q ss_pred cCCChHHHHHHHHHHhcccCC-------CCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcc-eeeecChhHHHHHHHHH
Q 011057 65 TTWMEPECDKLMMAAINKNYV-------DMDEYPVTTELQNRCVNIIARLFNAPLEDSETAV-GVGTVGSSEAIMLAGLA 136 (494)
Q Consensus 65 ~~~~~p~~~~~~~~~~~~~~~-------~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~-~~~t~ggt~a~~~a~~a 136 (494)
+.++++.+.+++.+++..... ....++...++.+++++++++++|.+++ .. +++|+||++++..++.+
T Consensus 12 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~----~~~i~~t~g~t~a~~~~~~~ 87 (362)
T 2c0r_A 12 PAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTG----YKVLFIQGGASTQFAMIPMN 87 (362)
T ss_dssp SCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSS----EEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCC----cEEEEECCCchHHHHHHHHh
Confidence 446678899998888754211 1123566777888999999999999641 13 46779999999988877
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEeCCCcchH--HHHHHHHcCCeeEEEeccC--C-ccccCHHHHHHhhhhCCeEEEEeeC
Q 011057 137 FKRKWQNKRKAEGKPFDKPNIVTGANVQVC--WEKFARYFEVELKEVKLSE--G-YYVMDPVKAVEMVDENTICVAAILG 211 (494)
Q Consensus 137 ~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s--~~~~~~~~G~~v~~v~~~~--~-~~~~d~~~L~~~i~~~t~~vv~~~~ 211 (494)
+.. .+++|+++...|++ +...++..| +++.++++. + +..+|.++++ ++++|++|+++++
T Consensus 88 l~~-------------~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~~t~~v~~~~~ 151 (362)
T 2c0r_A 88 FLK-------------EGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQDNAAYLHLTSN 151 (362)
T ss_dssp HCC-------------TTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCTTEEEEEEESE
T ss_pred cCC-------------CCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cCCCcCEEEEeCC
Confidence 632 12577776666554 346777889 999999862 1 1235665553 6778999999999
Q ss_pred CCCcccc-cCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEE
Q 011057 212 STLNGEF-EDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIW 290 (494)
Q Consensus 212 ~~~tG~~-~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~ 290 (494)
+|+||.+ .|+++| + ++++++|++|+.+..++ ++. ..|++++++|||+ +|.|+|++++
T Consensus 152 ~n~tG~~~~~l~~i------~------~~~vivD~a~~~~~~~~-------~~~--~~d~~~~s~~K~~-g~~G~G~l~~ 209 (362)
T 2c0r_A 152 ETIEGAQFKAFPDT------G------SVPLIGDMSSDILSRPF-------DLN--QFGLVYAGAQKNL-GPSGVTVVIV 209 (362)
T ss_dssp ETTTTEECSSCCCC------T------TSCEEEECTTTTTSSCC-------CGG--GCSEEEEETTTTT-CCSSCEEEEE
T ss_pred cCccceeccccccc------C------CCEEEEEChhhccCCcc-------chh--HCcEEEEeccccc-cCcCcEEEEE
Confidence 9999995 888887 7 99999999998764322 221 2489999999998 4788999998
Q ss_pred eCCCCccccccc-ccCCCCC--CCCCcccccCcchHHHHHHHHHHHHhcHh-HHHHHHHHHHHHHHHHHHHHhhCCCe-E
Q 011057 291 RNKEDLPEELIF-HINYLGA--DQPTFTLNFSKGSSQVIAQYYQLIRLGFE-GYRNVMENCHENAMVLKEGLEKTGRF-N 365 (494)
Q Consensus 291 ~~~~~~~~~~~~-~~~y~~~--~~~~~~~~~s~~~~~~~a~~~al~~l~~~-g~~~~~~~~~~~a~~l~~~L~~~~~~-~ 365 (494)
+++. + +.+.. .+.+... ........++.+.....++.++++.+... +++++.++..++++++.+.|++++++ +
T Consensus 210 ~~~~-~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 287 (362)
T 2c0r_A 210 REDL-V-AESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYR 287 (362)
T ss_dssp EGGG-S-SSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSE
T ss_pred cHHH-H-hhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 7642 2 11111 1111100 00000112455556667778888777665 78899999999999999999998756 7
Q ss_pred EeecC--CCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHH
Q 011057 366 IVSKD--EGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHE 443 (494)
Q Consensus 366 ~~~~~--~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~ 443 (494)
+..++ ...++++|.++. +.+..+++++|.++|+.+.... + . ...+|+|++..++.++++++++.|++++++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~~~gi~~~~g~-~---~-~~~iRis~~~~~~~e~i~~l~~~l~~~~~~ 360 (362)
T 2c0r_A 288 GCVDVDSRSDMNITFRLAS--EELEKEFVKASEQEGFVGLKGH-R---S-VGGLRASIYNAVPYESCEALVQFMEHFKRS 360 (362)
T ss_dssp ESSCGGGBCSSEEEEECSC--HHHHHHHHHHHHHTTEESCBCC-T---T-TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCChHHcCCcEEEEEcCC--cchHHHHHHHHHHCCCeeccCC-C---C-CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 65322 134677787742 3456789999999999763211 1 1 235999999989999999999999988764
No 87
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.95 E-value=2.2e-25 Score=221.98 Aligned_cols=329 Identities=14% Similarity=0.068 Sum_probs=231.2
Q ss_pred CCCCcccccccC-CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHH
Q 011057 55 NPRLNLASFVTT-WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLA 133 (494)
Q Consensus 55 ~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a 133 (494)
...++|....++ +++|.+.+++.+.+... . .++. ....++++++++++|.++ ..+++|+|+++++.++
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~---~y~~--~~~~~lr~~la~~~~~~~-----~~v~~~~g~t~a~~~~ 100 (363)
T 3ffh_A 32 TKITKLSSNENPLGTSKKVAAIQANSSVET-E---IYPD--GWASSLRKEVADFYQLEE-----EELIFTAGVDELIELL 100 (363)
T ss_dssp SCCEECSSCSCTTCCCHHHHHHHHTCBSCC-C---BC------CHHHHHHHHHHHTCCG-----GGEEEESSHHHHHHHH
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHHHHHh-h---cCCC--cchHHHHHHHHHHhCCCh-----hhEEEeCCHHHHHHHH
Confidence 344555555443 35678888887766432 1 2221 122456777999999764 4599999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCC
Q 011057 134 GLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGST 213 (494)
Q Consensus 134 ~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~ 213 (494)
+.++..+ +++|+++.++|..+...++..|++++.++++++ +.+|+++|++++++++++|++++++|
T Consensus 101 ~~~~~~~-------------gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~p~n 166 (363)
T 3ffh_A 101 TRVLLDT-------------TTNTVMATPTFVQYRQNALIEGAEVREIPLLQD-GEHDLEGMLNAIDEKTTIVWICNPNN 166 (363)
T ss_dssp HHHHCST-------------TCEEEEEESSCHHHHHHHHHHTCEEEEEECCTT-SCCCHHHHHHHCCTTEEEEEEESSCT
T ss_pred HHHHccC-------------CCEEEEcCCChHHHHHHHHHcCCEEEEecCCCC-CCcCHHHHHHhcccCCCEEEEeCCCC
Confidence 8776321 258999999999999999999999999999864 78999999999999999999999999
Q ss_pred CcccccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCC-cCCceEEEEEeC
Q 011057 214 LNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGL-VYAGIGWVIWRN 292 (494)
Q Consensus 214 ~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~G~~~~~~ 292 (494)
+||.+.|+++|.++++.+.+ |+++++|++|+.+..+-...... ......-+++..+++|+++ ++.++|++++++
T Consensus 167 ptG~~~~~~~l~~l~~~~~~----~~~li~De~~~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~ 241 (363)
T 3ffh_A 167 PTGNYIELADIQAFLDRVPS----DVLVVLDEAYIEYVTPQPEKHEK-LVRTYKNLIITRTFSKIYGLASARVGYGIADK 241 (363)
T ss_dssp TTCCCCCHHHHHHHHTTSCT----TSEEEEECTTGGGCSSCCCCCGG-GGGTCTTEEEEEESSSTTCCSSCCCEEEEECH
T ss_pred CcCCCcCHHHHHHHHHhCCC----CcEEEEeCchHhhcCccccCHHH-HhhcCCCEEEEeechhhhcCchhceeeeecCH
Confidence 99999999999999987632 79999999999654210001011 1122334566778889885 556669998743
Q ss_pred CCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCC
Q 011057 293 KEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEG 372 (494)
Q Consensus 293 ~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~ 372 (494)
... +.+..... . ++.+.....++.++++ ..+.+++..++..++++++.+.|+++.++++..+ .
T Consensus 242 -~~~-~~l~~~~~-------~----~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~--~ 304 (363)
T 3ffh_A 242 -EII-RQLNIVRP-------P----FNTTSIGQKLAIEAIK--DQAFIGECRTSNANGIKQYEAFAKRFEKVKLYPA--N 304 (363)
T ss_dssp -HHH-HHHHHTCC-------S----CCCBHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCC--C
T ss_pred -HHH-HHHHHhCC-------C----CCCCHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHhhCCCceECCC--C
Confidence 222 21111100 0 1222333333444443 2356678888899999999999999656887643 4
Q ss_pred ccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHH
Q 011057 373 VPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKV 440 (494)
Q Consensus 373 ~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~ 440 (494)
.+++.+.+.. +..++.++|.++|+.+.....+. ...++|++++ ++++++++++.|+++
T Consensus 305 ~~~~~~~~~~----~~~~~~~~l~~~gi~v~~g~~~~---~~~~iRis~~---~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 305 GNFVLIDLGI----EAGTIFSYLEKNGYITRSGAALG---FPTAVRITIG---KEEDNSAVIALLEKL 362 (363)
T ss_dssp SSEEEEECSS----CHHHHHHHHHHTTEECEETTTTT---CTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCC----CHHHHHHHHHHCCeEEEeCccCC---CCCeEEEECC---CHHHHHHHHHHHHHh
Confidence 5777777742 67899999999999876543322 1458999987 889999999988875
No 88
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.95 E-value=5.7e-26 Score=227.39 Aligned_cols=346 Identities=13% Similarity=0.001 Sum_probs=234.1
Q ss_pred cCCCCCcccccccCC-ChHHHHHHHHHHhccc-CCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHH
Q 011057 53 DGNPRLNLASFVTTW-MEPECDKLMMAAINKN-YVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAI 130 (494)
Q Consensus 53 ~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~ 130 (494)
.++..++|..+.+.. ++|.+.+++.+.+... ...|...++..++++.+.+++.+.+|.+.+. ...+++|+|+++++
T Consensus 23 ~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~--~~~v~~~~g~~~a~ 100 (376)
T 2dou_A 23 RGVGLIDLSIGSTDLPPPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDP--RREALALIGSQEGL 100 (376)
T ss_dssp TTCCCEECSSCCCCCCCCHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCT--TTSEEEESSHHHHH
T ss_pred cCCCEEeccCCCCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CccEEEcCCcHHHH
Confidence 455566666655443 4678899998887643 2334333467778888777777777986321 01489999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEee
Q 011057 131 MLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAIL 210 (494)
Q Consensus 131 ~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~ 210 (494)
.+++.++..+ +++|+++.++|..+...++..|++++.+|+ ++++.+|+++|++++.+++++|++++
T Consensus 101 ~~~~~~l~~~-------------gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~d~~~l~~~l~~~~~~v~l~~ 166 (376)
T 2dou_A 101 AHLLLALTEP-------------EDLLLLPEVAYPSYFGAARVASLRTFLIPL-REDGLADLKAVPEGVWREAKVLLLNY 166 (376)
T ss_dssp HHHHHHHCCT-------------TCEEEEESSCCHHHHHHHHHTTCEEEEECB-CTTSSBCGGGSCHHHHHHEEEEEECS
T ss_pred HHHHHHhcCC-------------CCEEEECCCCcHhHHHHHHHcCCEEEEeeC-CCCCCCCHHHHHHhhccCceEEEECC
Confidence 9888776321 258999999999999999999999999998 44467899999999988889999999
Q ss_pred CCCCcccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccc-cCCCceEEEEcCcccCC-cCCce
Q 011057 211 GSTLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDF-RLPLVKSINVSGHKYGL-VYAGI 285 (494)
Q Consensus 211 ~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~hK~l~-~p~g~ 285 (494)
++||||.+.| +++|.++|+++ |+++++|++|+.+...- .+.....+ ...+.+++..+++|++. ++.++
T Consensus 167 p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 239 (376)
T 2dou_A 167 PNNPTGAVADWGYFEEALGLARKH------GLWLIHDNPYVDQVYEG-EAPSPLALPGAKERVVELFSLSKSYNLAGFRL 239 (376)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTGGGBSSS-CCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCC
T ss_pred CCCCcCccCCHHHHHHHHHHHHHc------CCEEEEEccchhcccCC-CCCChhhcCCCCCcEEEEecchhhcCChhhee
Confidence 9999999966 67899999999 99999999998764210 00000111 11245677889999885 55678
Q ss_pred EEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeE
Q 011057 286 GWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFN 365 (494)
Q Consensus 286 G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~ 365 (494)
|+++.++ ... +.+...... ..++.+.....++.++++. +.+.+++..++..++++++.+.|+++ ++
T Consensus 240 G~~~~~~-~~~-~~l~~~~~~---------~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~--~~ 305 (376)
T 2dou_A 240 GFALGSE-EAL-ARLERVKGV---------IDFNQYAGVLRMGVEALKT-PKEVVRGYARVYRERALGMAEALKGV--LS 305 (376)
T ss_dssp EEEEECH-HHH-HHHHHHHHH---------HCCCSCHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHHHHHTTT--SE
T ss_pred EEEecCH-HHH-HHHHHHHHh---------cccCCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHh--cC
Confidence 9987643 222 211110000 0011122222333333332 24567778888889999999999887 66
Q ss_pred EeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHH
Q 011057 366 IVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVL 441 (494)
Q Consensus 366 ~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~ 441 (494)
+..+. ...++.+.++. +.+..++.++|.++|+.+....... ..+..++|++++. ++++++++++.|++++
T Consensus 306 ~~~~~-~~~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~g~~f~-~~~~~~~Ris~~~--~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 306 LLPPR-ATMYLWGRLPE--GVDDLEFGLRLVERGVALAPGRGFG-PGGKGFVRIALVR--PLEELLEAAKRIREAL 375 (376)
T ss_dssp ECCCC-BSSEEEEECCT--TCCHHHHHHHHHHTTEECEEGGGGC-GGGTTEEEEECCS--CHHHHHHHHHHHHHTC
T ss_pred ccCCC-eeEEEEEECCC--CCCHHHHHHHHHHCCEEEcCchhhC-CCCCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence 65432 23356667642 4577889999999999985433221 1234689999874 7778887777776543
No 89
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.95 E-value=1.4e-25 Score=226.35 Aligned_cols=347 Identities=12% Similarity=0.031 Sum_probs=239.0
Q ss_pred CCcccccccC-CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHH
Q 011057 57 RLNLASFVTT-WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGL 135 (494)
Q Consensus 57 ~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~ 135 (494)
.++|....+. +++|.+.+++.+.++.....|... ..++++.+.+++++.+|.+.+ ...+++|+|+++|+.+++.
T Consensus 33 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~---~~~v~~t~g~~~a~~~~~~ 107 (399)
T 1c7n_A 33 VVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGP--TEEYKKTVKKWMKDRHQWDIQ---TDWIINTAGVVPAVFNAVR 107 (399)
T ss_dssp CCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSBCC--CHHHHHHHHHHHHHHHCCCCC---GGGEEEESSHHHHHHHHHH
T ss_pred ceeeeecCCCCCCCHHHHHHHHHHHhcCCCCCCCC--cHHHHHHHHHHHHHHhCCCCC---hhhEEEcCCHHHHHHHHHH
Confidence 3445544433 356788898888876533334332 678888888888888885431 2458999999999998888
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEecc-CC-ccccCHHHHHHhhh-hCCeEEEEeeCC
Q 011057 136 AFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLS-EG-YYVMDPVKAVEMVD-ENTICVAAILGS 212 (494)
Q Consensus 136 a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~-~~-~~~~d~~~L~~~i~-~~t~~vv~~~~~ 212 (494)
++.. .+++|+++.++|..+...++..|++++.+|++ ++ ++.+|+++|+++++ +++++|++++++
T Consensus 108 ~l~~-------------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~ 174 (399)
T 1c7n_A 108 EFTK-------------PGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPH 174 (399)
T ss_dssp HHCC-------------TTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSB
T ss_pred HhcC-------------CCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCC
Confidence 7632 12589999999999999999999999999885 32 35699999999998 678899999999
Q ss_pred CCcccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccc-cC----CCceEEEEcCcccCC-cCC
Q 011057 213 TLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDF-RL----PLVKSINVSGHKYGL-VYA 283 (494)
Q Consensus 213 ~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~----~~~D~~~~~~hK~l~-~p~ 283 (494)
||||.+.| +++|+++|+++ ++++++|++|+.+.. ..... ..+ .. ...+++..+++|++. ++.
T Consensus 175 nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--~g~~~-~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ 245 (399)
T 1c7n_A 175 NPVGRVWKKDELQKIKDIVLKS------DLMLWSDEIHFDLIM--PGYEH-TVFQSIDEQLADKTITFTAPSKTFNIAGM 245 (399)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHS------SCEEEEECTTTTCBC--TTCCC-CCGGGSCHHHHTTEEEEECSHHHHTCGGG
T ss_pred CCCCcCcCHHHHHHHHHHHHHc------CCEEEEEcccccccc--CCCCc-ccHHHcCccccCcEEEEEeChhhccccch
Confidence 99999988 99999999999 999999999987542 11100 011 11 235677889999985 555
Q ss_pred ceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhh-CC
Q 011057 284 GIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK-TG 362 (494)
Q Consensus 284 g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~-~~ 362 (494)
++|+++++++............+. + ++.+.....++.+++.. +.+.+++..++..++++++.+.|++ ++
T Consensus 246 r~G~~~~~~~~~~~~l~~~~~~~~--------~-~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 315 (399)
T 1c7n_A 246 GMSNIIIKNPDIRERFTKSRDATS--------G-MPFTTLGYKACEICYKE-CGKWLDGCIKVIDKNQRIVKDFFEVNHP 315 (399)
T ss_dssp CCEEEECCCHHHHHHHHHHHHHTT--------C-CCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred heEEEEECCHHHHHHHHHHHhhcc--------c-CCCCHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 689998765423211111111110 0 12222333333344432 3456778888889999999999998 77
Q ss_pred CeEEeecCCCccEE-EEEecCCCCCCHHHHHHHHH-hcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHH
Q 011057 363 RFNIVSKDEGVPLV-AFSLKDNKRHDEFEVAELLR-RFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKV 440 (494)
Q Consensus 363 ~~~~~~~~~~~~~v-~f~~~~~~~~~~~~l~~~L~-~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~ 440 (494)
++++..+ ..+++ .+.+.. .+.+..++.++|. ++|+.+....... ..+..++|++++. ++++++.+++.|+++
T Consensus 316 ~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g~~~~-~~~~~~iRis~~~--~~~~l~~~l~~l~~~ 389 (399)
T 1c7n_A 316 EIKAPLI--EGTYLQWIDFRA-LKMDHKAMEEFMIHKAQIFFDEGYIFG-DGGIGFERINLAA--PSSVIQESLERLNKA 389 (399)
T ss_dssp TSBCCCC--SBSSEEEEECGG-GCCCHHHHHHHHHHTTCCCCEEGGGGC-GGGTTEEEEECCS--CHHHHHHHHHHHHHH
T ss_pred CCeEecC--CceEEEEEEccc-CCCCHHHHHHHHHHhCCEEEeCccccC-CCCCCeEEEEecc--CHHHHHHHHHHHHHH
Confidence 7876543 34555 466642 1246788999997 7899875433221 1234689999985 378898888888888
Q ss_pred HHHHhc
Q 011057 441 LHELDS 446 (494)
Q Consensus 441 ~~~l~~ 446 (494)
++++.+
T Consensus 390 l~~~~~ 395 (399)
T 1c7n_A 390 LKDLKN 395 (399)
T ss_dssp HHHHC-
T ss_pred HHHHHh
Confidence 877643
No 90
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.95 E-value=1.7e-26 Score=229.28 Aligned_cols=322 Identities=12% Similarity=0.006 Sum_probs=225.6
Q ss_pred cCCChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHH
Q 011057 65 TTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNK 144 (494)
Q Consensus 65 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~ 144 (494)
.++++|.+.+++.+.+.. |....+..++++++++++++++|.+. ..+++|+||++|+..++.+++.+
T Consensus 23 ~~~~~~~v~~a~~~~~~~----~~~~~g~~~~~~~~~~~l~~~~g~~~-----~~v~~~~g~t~a~~~~~~~~~~~---- 89 (359)
T 1svv_A 23 SVGMHPKILDLMARDNMT----QHAGYGQDSHCAKAARLIGELLERPD-----ADVHFISGGTQTNLIACSLALRP---- 89 (359)
T ss_dssp SSCCCHHHHHHHHHHTTC----CCCSTTCSHHHHHHHHHHHHHHTCTT-----SEEEEESCHHHHHHHHHHHHCCT----
T ss_pred cCCCCHHHHHHHHHHHhh----ccccccccHHHHHHHHHHHHHhCCCC-----ccEEEeCCchHHHHHHHHHHhCC----
Confidence 335678899999888763 22334556788899999999999764 35899999999999998887331
Q ss_pred HHhcCCCCCCCeEEeCCCcchHHHH--HHHHcCCeeEEEeccCCccccCHHHHHHhhhhC-------CeEEEEeeCCCCc
Q 011057 145 RKAEGKPFDKPNIVTGANVQVCWEK--FARYFEVELKEVKLSEGYYVMDPVKAVEMVDEN-------TICVAAILGSTLN 215 (494)
Q Consensus 145 ~~~~g~~~~~~~vi~~~~~h~s~~~--~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~-------t~~vv~~~~~~~t 215 (494)
+++|+++.++|.++.. .++..|++++.++.+ ++.+|+++|+++++++ +++|+++++ |+|
T Consensus 90 ---------gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~pt 157 (359)
T 1svv_A 90 ---------WEAVIATQLGHISTHETGAIEATGHKVVTAPCP--DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEV 157 (359)
T ss_dssp ---------TEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT--TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTT
T ss_pred ---------CCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC--CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCC
Confidence 2589999999998877 478889999999986 3689999999999876 788888888 689
Q ss_pred ccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccC-CCceEEEEcCcccCCcCCceEEEEEe
Q 011057 216 GEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRL-PLVKSINVSGHKYGLVYAGIGWVIWR 291 (494)
Q Consensus 216 G~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~-~~~D~~~~~~hK~l~~p~g~G~~~~~ 291 (494)
|.+.| +++|.++|+++ |+++|+|++|.++..+.. +.....+.. ..+|++++++||++ +|.|+|+++++
T Consensus 158 G~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~d~~~~s~~K~g-~~~~~g~l~~~ 229 (359)
T 1svv_A 158 GTQYTKQELEDISASCKEH------GLYLFLDGARLASALSSP-VNDLTLADIARLTDMFYIGATKAG-GMFGEALIILN 229 (359)
T ss_dssp SCCCCHHHHHHHHHHHHHH------TCEEEEECTTHHHHHTST-TCCCCHHHHHHHCSEEEEECTTTT-CSSCEEEEECS
T ss_pred ceecCHHHHHHHHHHHHHh------CCEEEEEccchhhhhcCC-CcchhhhhhhhcCCEEEEecccCC-CCCceEEEEEc
Confidence 99988 89999999999 999999999954321111 100001010 25799999999985 57888988875
Q ss_pred CCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCC
Q 011057 292 NKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDE 371 (494)
Q Consensus 292 ~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~ 371 (494)
++ .+ +.+..... ..+. . ......... +. ...+..+++++..++..++++++.+.| +.+++++..+.
T Consensus 230 ~~-~~-~~~~~~~~-~~~~----~--~~~~~~~~~-~~--~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~- 295 (359)
T 1svv_A 230 DA-LK-PNARHLIK-QRGA----L--MAKGWLLGI-QF--EVLMKDNLFFELGAHSNKMAAILKAGL-EACGIRLAWPS- 295 (359)
T ss_dssp GG-GC-TTHHHHHH-HTTC----C--CTTTHHHHH-HH--HHHTSTTHHHHHHHHHHHHHHHHHHHH-HHTTCCBSSCC-
T ss_pred cc-HH-HHHHHHHh-cCCc----c--cccchhhHH-HH--HHHHhhhhHHHHHHHHHHHHHHHHHHh-ccCCeEEccCC-
Confidence 42 22 21111000 0010 0 000111111 11 234555667888899999999999999 55668776543
Q ss_pred CccEEEEEecCCCCCCHHHHHHHHHhc-CceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHH
Q 011057 372 GVPLVAFSLKDNKRHDEFEVAELLRRF-GWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHEL 444 (494)
Q Consensus 372 ~~~~v~f~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l 444 (494)
..+++.+.+. .++.++|.++ |+.+... ...+..++|++++..+++++++++++.|+++++++
T Consensus 296 ~~~~~~~~~~-------~~~~~~l~~~~gi~v~~~----~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 296 ASNQLFPILE-------NTMIAELNNDFDMYTVEP----LKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp SSSEECBEEE-------HHHHHHHTTTEECEEEEE----ETTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred ccceEEEEcC-------HHHHHHHHHhcCEEEEec----ccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence 4566655552 4789999999 9987211 11345789999888889999999999988876543
No 91
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.95 E-value=7.7e-26 Score=226.32 Aligned_cols=344 Identities=11% Similarity=-0.001 Sum_probs=237.8
Q ss_pred hcCCCCCcccccccC-CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHH
Q 011057 52 LDGNPRLNLASFVTT-WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAI 130 (494)
Q Consensus 52 ~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~ 130 (494)
.+++.+++|..+.+. +++|.+.+++.+.+......|.. .+ .++++.+.+++.+.+|.+.+ ...+++|+|+++|+
T Consensus 20 ~~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~-~~-~~lr~~la~~~~~~~~~~~~---~~~i~~t~g~~~a~ 94 (377)
T 3fdb_A 20 RYGQGVLPLWVAESDFSTCPAVLQAITDAVQREAFGYQP-DG-SLLSQATAEFYADRYGYQAR---PEWIFPIPDVVRGL 94 (377)
T ss_dssp SSCTTSEECCSSCCCSCCCHHHHHHHHHHHHTTCCSSCC-SS-CCHHHHHHHHHHHHHCCCCC---GGGEEEESCHHHHH
T ss_pred ccCCCeeeecccCCCCCCCHHHHHHHHHHHHcCCCCCCC-CC-HHHHHHHHHHHHHHhCCCCC---HHHEEEeCChHHHH
Confidence 356666666665544 34678999998888764444444 44 67888888888888886542 24689999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEee
Q 011057 131 MLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAIL 210 (494)
Q Consensus 131 ~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~ 210 (494)
..++.++..+ +++|+++.++|..+...++..|++++.++++++ +|+++|++++++++++|++++
T Consensus 95 ~~~~~~~~~~-------------gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~d~~~l~~~l~~~~~~v~i~~ 158 (377)
T 3fdb_A 95 YIAIDHFTPA-------------QSKVIVPTPAYPPFFHLLSATQREGIFIDATGG---INLHDVEKGFQAGARSILLCN 158 (377)
T ss_dssp HHHHHHHSCT-------------TCCEEEEESCCTHHHHHHHHHTCCEEEEECTTS---CCHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHhcCC-------------CCEEEEcCCCcHhHHHHHHHcCCEEEEccCCCC---CCHHHHHHHhccCCCEEEEeC
Confidence 9888776321 257999999999999999999999999998874 999999999999999999999
Q ss_pred CCCCcccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCccccccc---CCCceEEEEcCcccC-CcCC
Q 011057 211 GSTLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFR---LPLVKSINVSGHKYG-LVYA 283 (494)
Q Consensus 211 ~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~---~~~~D~~~~~~hK~l-~~p~ 283 (494)
++||||.+.| +++|+++|+++ |+++++|++|+.+.. ........+. ....+.+..+++|++ .++.
T Consensus 159 p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~ 230 (377)
T 3fdb_A 159 PYNPLGMVFAPEWLNELCDLAHRY------DARVLVDEIHAPLVF--DGQHTVAAGVSDTAASVCITITAPSKAWNIAGL 230 (377)
T ss_dssp SBTTTTBCCCHHHHHHHHHHHHHT------TCEEEEECTTGGGBS--SSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHc------CCEEEEEcccchhhc--CCCCCcccHHHccCCCcEEEEEeChHhccCcch
Confidence 9999999964 66777889999 999999999987542 1100011111 123457788999998 4667
Q ss_pred ceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhh-CC
Q 011057 284 GIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK-TG 362 (494)
Q Consensus 284 g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~-~~ 362 (494)
++|++++.++... ..+.....+ ..++.+.....++.++++. +.+.++++.++..++++++.+.|++ ++
T Consensus 231 r~G~~~~~~~~~~-~~~~~~~~~---------~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 299 (377)
T 3fdb_A 231 KCAQIIFSNPSDA-EHWQQLSPV---------IKDGASTLGLIAAEAAYRY-GTDFLNQEVAYLKNNHDFLLHEIPKRIP 299 (377)
T ss_dssp CCEEEECCSHHHH-HHHHHSCHH---------HHCCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred hheEEEeCCHHHH-HHHHHHHHh---------hcCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 7898877554322 111110000 0122222333333444432 2455778888999999999999998 77
Q ss_pred CeEEeecCCCccEE-EEEecCCCCCCHHHHHHHHHhc-CceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHH
Q 011057 363 RFNIVSKDEGVPLV-AFSLKDNKRHDEFEVAELLRRF-GWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKV 440 (494)
Q Consensus 363 ~~~~~~~~~~~~~v-~f~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~ 440 (494)
++++..+. .+++ .+.+... +.+ .++.+.|.++ |+.+........ .+..++|++++. ++++++.+++.|+++
T Consensus 300 ~~~~~~~~--~~~~~~~~~~~~-~~~-~~~~~~l~~~~gi~v~~g~~~~~-~~~~~~Ris~~~--~~e~i~~~l~~l~~~ 372 (377)
T 3fdb_A 300 GAKITPMQ--ATYLMWIDFRDT-TIE-GSPSEFFIEKAKVAMNDGAWFGE-DGTGFCRLNFAT--SREVLEEAIDRMAKA 372 (377)
T ss_dssp TCEECCCS--BCSEEEEECTTS-CCC-SCHHHHHHHHHCEECEEGGGGCG-GGTTEEEEECCS--CHHHHHHHHHHHHHH
T ss_pred CceEecCC--eeEEEEEECccc-CCC-HHHHHHHHHhCCEEecCChhccC-CCCCEEEEEeCC--CHHHHHHHHHHHHHH
Confidence 78887553 3444 4666431 233 4677777765 998854332211 235689999884 788888888888777
Q ss_pred HH
Q 011057 441 LH 442 (494)
Q Consensus 441 ~~ 442 (494)
++
T Consensus 373 l~ 374 (377)
T 3fdb_A 373 VS 374 (377)
T ss_dssp HT
T ss_pred Hh
Confidence 64
No 92
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.95 E-value=4e-25 Score=226.41 Aligned_cols=348 Identities=13% Similarity=0.028 Sum_probs=238.5
Q ss_pred CCCcccccccCC---ChHHHHHHHHHHhcccC---CCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHH
Q 011057 56 PRLNLASFVTTW---MEPECDKLMMAAINKNY---VDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEA 129 (494)
Q Consensus 56 ~~~~~~~~~~~~---~~p~~~~~~~~~~~~~~---~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a 129 (494)
..++|+++.+.+ +++.+.+++.+.++... ..|...++..++++.+.+++.+.+|.+ +. ..+++|+|+++|
T Consensus 77 ~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~-~~---~~v~~t~G~~~a 152 (448)
T 3aow_A 77 DIISLAGGLPNPKTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGIS-QD---NDIMITSGSQQA 152 (448)
T ss_dssp SSEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCC-TT---SEEEEESSHHHH
T ss_pred CcEeCCCCCCCchhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcC-Ch---hhEEEeCcHHHH
Confidence 345666655432 45678888887776532 345555677888888888887777984 21 358999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhh----h--CC
Q 011057 130 IMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVD----E--NT 203 (494)
Q Consensus 130 ~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~----~--~t 203 (494)
+.+++.++.++ +++|+++.++|..+...++..|++++.+|++++ .+|+++|+++++ + ++
T Consensus 153 l~~~~~~l~~~-------------Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~--g~d~~~L~~~l~~~~~~~~~~ 217 (448)
T 3aow_A 153 LDLIGRVFLNP-------------GDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDE--GMKVEILEEKLKELKSQGKKV 217 (448)
T ss_dssp HHHHHHHHCCT-------------TCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT--EECHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHcCC-------------CCEEEEeCCChHHHHHHHHHcCCEEEEeccCCC--CCCHHHHHHHHhhhhccCCCC
Confidence 99888887321 268999999999999999999999999999875 399999999997 5 67
Q ss_pred eEE-EEeeCCCCcccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcc--cccccCCCceEEEEcCcc
Q 011057 204 ICV-AAILGSTLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPEL--EWDFRLPLVKSINVSGHK 277 (494)
Q Consensus 204 ~~v-v~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~hK 277 (494)
++| ++++++||||.+.+ +++|.++|+++ |+++++|++|+.+.. ..... -..+...+.+++..+++|
T Consensus 218 k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~------~~~lI~De~y~~~~~--~g~~~~~~~~~~~~~~vi~~~S~SK 289 (448)
T 3aow_A 218 KVVYTVPTFQNPAGVTMNEDRRKYLLELASEY------DFIVVEDDPYGELRY--SGNPEKKIKALDNEGRVIYLGTFSK 289 (448)
T ss_dssp EEEEECCSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECSCTTCBC--SSCCCCCTGGGCTTSCEEEEEESTT
T ss_pred eEEEECCCCCCCcCCCCCHHHHHHHHHHHHHc------CCEEEEECCCccccC--CCCCCcCHHhcCCCCCEEEEccchh
Confidence 776 46789999999866 56899999999 999999999987642 11100 012222345677788899
Q ss_pred cCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhc-HhHHHHHHHHHHHHHHHHHH
Q 011057 278 YGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG-FEGYRNVMENCHENAMVLKE 356 (494)
Q Consensus 278 ~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~-~~g~~~~~~~~~~~a~~l~~ 356 (494)
++.++.++|+++++++ .+ +.+...... ...+.+.....++.++|+..+ .+.++++.+++.++++++.+
T Consensus 290 ~~~~GlriG~v~~~~~-l~-~~l~~~~~~---------~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~ 358 (448)
T 3aow_A 290 ILAPGFRIGWMVGDPG-II-RKMEIAKQS---------TDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLE 358 (448)
T ss_dssp TTCGGGCCEEEEECHH-HH-HHHHHHHHH---------HHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccEEEEEeCHH-HH-HHHHHHHHH---------hcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9875556899987632 22 221111000 001112222222333332211 23456667777788999999
Q ss_pred HHhh-CC-CeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccC-CCCCCceEEEEEeccCCChHHHHHH
Q 011057 357 GLEK-TG-RFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMP-ADAQHITVLRVVIREDFSRTLAERL 433 (494)
Q Consensus 357 ~L~~-~~-~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~-~~~~~~~~lRvs~~~~~t~~~id~~ 433 (494)
.|++ ++ ++++..+. ...++.+.++. +.+..++.++|.++|+.+...... ....+..++|++++. .++++++.+
T Consensus 359 ~L~~~~~~g~~~~~p~-~g~~~~v~~~~--~~~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~-~~~e~i~~~ 434 (448)
T 3aow_A 359 ALEEFMPEGVKWTKPE-GGMFIWVTLPD--GIDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTY-VDEDKIMEG 434 (448)
T ss_dssp HHHHHCCTTCEECCCS-BSSEEEEECST--TCCHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS-SCTHHHHHH
T ss_pred HHHHhCCCCeEEeCCC-ccEEEEEEcCC--CCCHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCC-CCHHHHHHH
Confidence 9987 45 48765443 45567777743 457889999999999987543221 111235689999875 488999999
Q ss_pred HHHHHHHHHHHh
Q 011057 434 VLDITKVLHELD 445 (494)
Q Consensus 434 i~~l~~~~~~l~ 445 (494)
++.|+++++++.
T Consensus 435 ~~~L~~~l~~~~ 446 (448)
T 3aow_A 435 IKRLAETIKEEL 446 (448)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998887653
No 93
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.95 E-value=9.4e-26 Score=229.70 Aligned_cols=350 Identities=15% Similarity=0.092 Sum_probs=239.2
Q ss_pred CCCcccccccC---CChHHHHHHHHHHhccc---CCCCCCChhhHHHHHHHHHHHHHHhCCC-CCCCCCcceeeecChhH
Q 011057 56 PRLNLASFVTT---WMEPECDKLMMAAINKN---YVDMDEYPVTTELQNRCVNIIARLFNAP-LEDSETAVGVGTVGSSE 128 (494)
Q Consensus 56 ~~~~~~~~~~~---~~~p~~~~~~~~~~~~~---~~~~~~~~~~~~le~~~~~~la~l~g~~-~~~~~~~~~~~t~ggt~ 128 (494)
..++|..+.+. ++++.+.+++.+.++.+ ...|...++..++++++.+++.+.+|.+ .+ ...+++|+|+++
T Consensus 44 ~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~---~~~v~~t~G~~~ 120 (425)
T 1vp4_A 44 DAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLD---EDNLIFTVGSQQ 120 (425)
T ss_dssp TCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCC---GGGEEEEEHHHH
T ss_pred CceeCCCCCCCcccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCC---cccEEEeccHHH
Confidence 34555554432 24677888888887653 2345444577888888888887777854 21 145899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhh-------
Q 011057 129 AIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDE------- 201 (494)
Q Consensus 129 a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~------- 201 (494)
|+.+++.++..+ +++|+++.++|..+...++..|++++.+|++++ + +|+++|++++++
T Consensus 121 al~~~~~~l~~~-------------gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~-~-~d~~~l~~~l~~~~~~~~~ 185 (425)
T 1vp4_A 121 ALDLIGKLFLDD-------------ESYCVLDDPAYLGAINAFRQYLANFVVVPLEDD-G-MDLNVLERKLSEFDKNGKI 185 (425)
T ss_dssp HHHHHHHHHCCT-------------TCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT-E-ECHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHhCCC-------------CCEEEEeCCCcHHHHHHHHHcCCEEEEeccCCC-C-CCHHHHHHHHHhhhhcccC
Confidence 999888876321 268999999999999999999999999998765 3 999999999976
Q ss_pred -CCeEE-EEeeCCCCcccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCc-cc-ccccCCCceEEEEc
Q 011057 202 -NTICV-AAILGSTLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPE-LE-WDFRLPLVKSINVS 274 (494)
Q Consensus 202 -~t~~v-v~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~-~~-~~~~~~~~D~~~~~ 274 (494)
++++| ++++++||||.+.| +++|+++|+++ ++++++|++|+.+.. .... .. ..+...+.+++..+
T Consensus 186 ~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~i~~~s 257 (425)
T 1vp4_A 186 KQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKY------DLFIVEDDPYGALRY--EGETVDPIFKIGGPERVVLLNT 257 (425)
T ss_dssp GGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECSSTTCBC--SSCCCCCHHHHHCTTTEEEEEE
T ss_pred CCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHc------CCEEEEECCCccccC--CCCCCcCHHHhCCCCCEEEEec
Confidence 67777 47899999999965 67899999999 999999999987642 1110 00 01122345778889
Q ss_pred CcccCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhc-HhHHHHHHHHHHHHHHH
Q 011057 275 GHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG-FEGYRNVMENCHENAMV 353 (494)
Q Consensus 275 ~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~-~~g~~~~~~~~~~~a~~ 353 (494)
++|++.++.++|++++++ ..+ ..+...... ..++.+.....++..+++... .+.+++..+++.+++++
T Consensus 258 ~sK~~~~G~r~G~~~~~~-~~~-~~l~~~~~~---------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 326 (425)
T 1vp4_A 258 FSKVLAPGLRIGMVAGSK-EFI-RKIVQAKQS---------ADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTV 326 (425)
T ss_dssp STTTTCGGGCEEEEECCH-HHH-HHHHHHHHH---------HHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHH
T ss_pred cccccccccceEEEeeCH-HHH-HHHHHHhhh---------hcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 999987556689998753 222 211110000 001112222333333333321 24456777788889999
Q ss_pred HHHHHhhC-C---CeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCC-CCCCceEEEEEeccCCChH
Q 011057 354 LKEGLEKT-G---RFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPA-DAQHITVLRVVIREDFSRT 428 (494)
Q Consensus 354 l~~~L~~~-~---~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~-~~~~~~~lRvs~~~~~t~~ 428 (494)
+.+.|++. + ++++..+. ...++.+.++. +.+..++.++|.++|+.+....... ...+..++|++++.. +++
T Consensus 327 l~~~L~~~~~~~~g~~~~~~~-~g~~~~~~~~~--~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~e 402 (425)
T 1vp4_A 327 MLNALEEYFSDIPGVKWVKSE-GGLFIWLTLPE--GFDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLP-PDE 402 (425)
T ss_dssp HHHHHHHHSTTSTTCEECCCS-BSSEEEEECCT--TCCTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSS-CHH
T ss_pred HHHHHHHhCCCCCceEEecCC-ccEEEEEEcCC--CCCHHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCC-CHH
Confidence 99999885 4 47776443 45577777743 3456689999999999885433221 112346899999863 889
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 011057 429 LAERLVLDITKVLHELDS 446 (494)
Q Consensus 429 ~id~~i~~l~~~~~~l~~ 446 (494)
+++++++.|+++++++.+
T Consensus 403 ~i~~~l~~l~~~l~~~~~ 420 (425)
T 1vp4_A 403 KIVEGIKRLREVVLEYGK 420 (425)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999998877643
No 94
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.95 E-value=1.2e-24 Score=217.24 Aligned_cols=317 Identities=12% Similarity=0.058 Sum_probs=228.0
Q ss_pred CChHHHHHHHHHHhccc---CCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHH
Q 011057 67 WMEPECDKLMMAAINKN---YVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQN 143 (494)
Q Consensus 67 ~~~p~~~~~~~~~~~~~---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~ 143 (494)
+++|.+.+++.+.++.. ...|....+ .++++.+.+++.+.+|.+.+ ...+++|+|+++++..++.++..+
T Consensus 43 ~~~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~---~~~v~~~~G~~~al~~~~~~l~~~--- 115 (369)
T 3cq5_A 43 PPSEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVT---RDNLWAANGSNEILQQLLQAFGGP--- 115 (369)
T ss_dssp CCCHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCC---GGGEEEESHHHHHHHHHHHHHCST---
T ss_pred CCCHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhhcccCCCC---hHhEEECCChHHHHHHHHHHhcCC---
Confidence 35678888888877653 233433223 68888888888887776531 245899999999998888776321
Q ss_pred HHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhh-CCeEEEEeeCCCCcccccCHH
Q 011057 144 KRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDE-NTICVAAILGSTLNGEFEDVK 222 (494)
Q Consensus 144 ~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~t~~vv~~~~~~~tG~~~~l~ 222 (494)
+++|+++.++|.++...++..|++++.++.+++ +.+|+++|++++++ ++++|++++++||||.+.|++
T Consensus 116 ----------gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~~ 184 (369)
T 3cq5_A 116 ----------GRTALGFQPSYSMHPILAKGTHTEFIAVSRGAD-FRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLD 184 (369)
T ss_dssp ----------TCEEEEEESSCTHHHHHHHHTTCEEEEEECCTT-SSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHH
T ss_pred ----------CCEEEEcCCChHHHHHHHHHcCCEEEEecCCcC-CCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHH
Confidence 258999999999999999999999999998754 68999999999988 889999999999999999999
Q ss_pred HHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCC-ceEEEEcCcccCC-cCCceEEEEEeCCCCccccc
Q 011057 223 LLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPL-VKSINVSGHKYGL-VYAGIGWVIWRNKEDLPEEL 300 (494)
Q Consensus 223 ~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~-~D~~~~~~hK~l~-~p~g~G~~~~~~~~~~~~~~ 300 (494)
++.++|+.+ ++++++|++|+.+... .+... .....+ .+++..+++|++. ++.++|++++++. .. +.+
T Consensus 185 ~l~~l~~~~------~~~li~De~~~~~~~~--~~~~~-~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~-~~-~~l 253 (369)
T 3cq5_A 185 DVERIINVA------PGIVIVDEAYAEFSPS--PSATT-LLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANPA-FI-DAV 253 (369)
T ss_dssp HHHHHHHHC------SSEEEEECTTGGGCCS--CCGGG-GTTTCTTTEEEEEESSSTTSCGGGCCEEEEECTH-HH-HHH
T ss_pred HHHHHHHhC------CCEEEEECCchhhcCC--cchHH-HHhhCCCCEEEEEechHhcCCcccceEEEEeCHH-HH-HHH
Confidence 999999999 9999999999876421 11011 111123 5688889999985 5556899987642 22 221
Q ss_pred ccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccEEEEEe
Q 011057 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSL 380 (494)
Q Consensus 301 ~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~ 380 (494)
..... . ++.+.....++.++++. .+.+++..++..++++++.+.|++.+ +++.. + ..+++.+.+
T Consensus 254 ~~~~~-------~----~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~-~-~~~~~~~~~ 317 (369)
T 3cq5_A 254 MLVRL-------P----YHLSALSQAAAIVALRH--SADTLGTVEKLSVERVRVAARLEELG-YAVVP-S-ESNFVFFGD 317 (369)
T ss_dssp HTTSC-------T----TCSCHHHHHHHHHHHHT--HHHHHTHHHHHHHHHHHHHHHHHHHT-CEEEC-C-SSSEEEEEC
T ss_pred HHcCC-------C----CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCC-CEECC-C-CCeEEEEEC
Confidence 11100 0 11222222333333332 34567788888899999999999864 88763 3 457777776
Q ss_pred cCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHH
Q 011057 381 KDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVL 441 (494)
Q Consensus 381 ~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~ 441 (494)
+ .+..++.++|.++|+.+... ....++|++++ ++++++++++.|++++
T Consensus 318 ~----~~~~~l~~~l~~~gi~v~~~------~~~~~iRis~~---~~~~i~~~~~~l~~~~ 365 (369)
T 3cq5_A 318 F----SDQHAAWQAFLDRGVLIRDV------GIAGHLRTTIG---VPEENDAFLDAAAEII 365 (369)
T ss_dssp C----SSHHHHHHHHHHTTEECBCC------SCTTEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred C----CCHHHHHHHHHHCCEEEEEC------CCCCeEEEEeC---CHHHHHHHHHHHHHHH
Confidence 3 36788999999999987543 12357999987 7889999998888775
No 95
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.95 E-value=2.8e-26 Score=230.91 Aligned_cols=330 Identities=9% Similarity=0.036 Sum_probs=223.9
Q ss_pred hHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhc
Q 011057 69 EPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAE 148 (494)
Q Consensus 69 ~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~ 148 (494)
++.+.+++.+.+..+... ...++.. ++++.+++++|.+. ++++++||+|+.+++.++...
T Consensus 35 ~~~~~~a~~~~~~~~~~~-~~~~~~~----~l~~~la~~~~~~~-------~i~~~~gt~al~~~l~~~~~~-------- 94 (391)
T 3dr4_A 35 DGNERDYVLECMDTTWIS-SVGRFIV----EFEKAFADYCGVKH-------AIACNNGTTALHLALVAMGIG-------- 94 (391)
T ss_dssp CSSHHHHHHHHHHHTCCS-SCSHHHH----HHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHTCC--------
T ss_pred CHHHHHHHHHHHHcCCcc-CCChHHH----HHHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHcCCC--------
Confidence 356777777777654321 1334444 45566889998863 889999999999888777210
Q ss_pred CCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHHH
Q 011057 149 GKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLL 228 (494)
Q Consensus 149 g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~la 228 (494)
.+++|+++.++|.++..+++..|++++.++++++++.+|+++|++++++++++|+ ++|+||.+.|+++|.++|
T Consensus 95 ----~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~tG~~~~~~~i~~l~ 167 (391)
T 3dr4_A 95 ----PGDEVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITPRTKAIM---PVHLYGQICDMDPILEVA 167 (391)
T ss_dssp ----TTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGSGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHH
T ss_pred ----CcCEEEECCCchHHHHHHHHHCCCEEEEEecCccccCcCHHHHHHhcCCCceEEE---EECCCCChhhHHHHHHHH
Confidence 1368999999999999999999999999999855588999999999988887776 567999999999999999
Q ss_pred HHhhcccCCCceEEEecccccccccccCCccccccc-CCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccccccCCC
Q 011057 229 AEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFR-LPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYL 307 (494)
Q Consensus 229 ~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~ 307 (494)
+++ |+++++|+||+.+.... +. ... ...+++++++.||++.+ ...|+++.+++... ..+.....+.
T Consensus 168 ~~~------~~~li~D~a~~~g~~~~--~~---~~~~~~di~~~S~s~~K~l~~-g~gg~~~~~~~~~~-~~~~~~~~~g 234 (391)
T 3dr4_A 168 RRH------NLLVIEDAAEAVGATYR--GK---KSGSLGDCATFSFFGNAIITT-GEGGMITTNDDDLA-AKMRLLRGQG 234 (391)
T ss_dssp HHT------TCEEEEECTTCTTCEET--TE---ETTSSSSEEEEECBTTSSSCC-BSCEEEEESCHHHH-HHHHHHHBTT
T ss_pred HHc------CCEEEEECcccccceEC--Ce---eecccCCEEEEECCCCCcCCc-CCeEEEEECCHHHH-HHHHHHHhcC
Confidence 999 99999999998654311 11 111 12467777779999966 34566666543221 1111110000
Q ss_pred CC--CCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeec--CC----CccEEEEE
Q 011057 308 GA--DQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSK--DE----GVPLVAFS 379 (494)
Q Consensus 308 ~~--~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~--~~----~~~~v~f~ 379 (494)
.. ........+.. .....+.+++.....+++++..++..++++++.+.|+++ ++++... +. ...++.+.
T Consensus 235 ~~~~~~~~~~~~g~~--~~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~i~ 311 (391)
T 3dr4_A 235 MDPNRRYWFPIVGFN--YRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARL-GNRVTKPHVALTGRHVFWMYTVR 311 (391)
T ss_dssp CCTTSTTCCSSCCCB--CBCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGG-TTSEECCCCCTTSCCCCSSEEEE
T ss_pred CCCCCcccccccccc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CccccCcCCCCCCcceeEEEEEE
Confidence 00 00000000111 112223344444445667788889999999999999998 5877654 21 22345666
Q ss_pred ecCCCCCCHHHHHHHHHhcCceeeccccCCCC-----------------CCceEEEEEeccCCChHHHHHHHHHHHHHH
Q 011057 380 LKDNKRHDEFEVAELLRRFGWIVPAYTMPADA-----------------QHITVLRVVIREDFSRTLAERLVLDITKVL 441 (494)
Q Consensus 380 ~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~-----------------~~~~~lRvs~~~~~t~~~id~~i~~l~~~~ 441 (494)
+....+.+..++.++|.++||.++.+..|... .....+|++++..+|.+|++++++.|++++
T Consensus 312 ~~~~~~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 312 LGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp ECSSCSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred ECCccchhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 64323567889999999999988654322100 024679999999999999999998887653
No 96
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.95 E-value=3.9e-25 Score=222.44 Aligned_cols=336 Identities=9% Similarity=-0.017 Sum_probs=230.4
Q ss_pred CChHHHHHHHHHHhcccCCCCCCChhhHH-HHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHH
Q 011057 67 WMEPECDKLMMAAINKNYVDMDEYPVTTE-LQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKR 145 (494)
Q Consensus 67 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~ 145 (494)
+++|.+.+++.+.++.....|... ..+ +++++.+++.+.+|.+.+ ...+++|+|+++|+.+++.++..
T Consensus 41 ~~~~~v~~a~~~~~~~~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~---~~~v~~t~g~~~al~~~~~~l~~------ 109 (390)
T 1d2f_A 41 ATAPCIIEALNQRLMHGVFGYSRW--KNDEFLAAIAHWFSTQHYTAID---SQTVVYGPSVIYMVSELIRQWSE------ 109 (390)
T ss_dssp CCCHHHHHHHHHHHTTCCCCCCCS--CCHHHHHHHHHHHHHHSCCCCC---GGGEEEESCHHHHHHHHHHHSSC------
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCC--ChHHHHHHHHHHHHHhcCCCCC---HHHEEEcCCHHHHHHHHHHHhcC------
Confidence 356789999988886533334332 556 888888888887785431 24589999999999988877632
Q ss_pred HhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCC--ccccCHHHHHHhhhh-CCeEEEEeeCCCCcccccC--
Q 011057 146 KAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEG--YYVMDPVKAVEMVDE-NTICVAAILGSTLNGEFED-- 220 (494)
Q Consensus 146 ~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~--~~~~d~~~L~~~i~~-~t~~vv~~~~~~~tG~~~~-- 220 (494)
.+++|+++.++|..+...++..|++++.+|++++ .+.+|+++|++++++ ++++|++++++||||.+.|
T Consensus 110 -------~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~ 182 (390)
T 1d2f_A 110 -------TGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCD 182 (390)
T ss_dssp -------TTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTT
T ss_pred -------CCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHH
Confidence 1258999999999999999999999999998642 356999999999986 7888998999999999976
Q ss_pred -HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccC-CC-ceEEEEcCcccCC-cCCceEEEEEeCCCCc
Q 011057 221 -VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRL-PL-VKSINVSGHKYGL-VYAGIGWVIWRNKEDL 296 (494)
Q Consensus 221 -l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~-~~-~D~~~~~~hK~l~-~p~g~G~~~~~~~~~~ 296 (494)
+++|+++|+++ |+++++|++|+.+.. ........... .. .|. ..+++|++. ++.++|+++++++...
T Consensus 183 ~l~~l~~~~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~~~~~~~~ 253 (390)
T 1d2f_A 183 ELEIMADLCERH------GVRVISDEIHMDMVW--GEQPHIPWSNVARGDWAL-LTSGSKSFNIPALTGAYGIIENSSSR 253 (390)
T ss_dssp HHHHHHHHHHHT------TCEEEEECTTTTCBC--SSSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCCEEEEECSHHHH
T ss_pred HHHHHHHHHHHc------CCEEEEEcccccccc--CCCCCcCHHHcchhhHhh-ccCccHhhcccChhheEEEECCHHHH
Confidence 88999999999 999999999987642 11111100111 12 266 788999985 5567899988654322
Q ss_pred ccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhh-CCCeEEeecCCCccE
Q 011057 297 PEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK-TGRFNIVSKDEGVPL 375 (494)
Q Consensus 297 ~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~~~~~ 375 (494)
..+..... +. .++ ++.+.....++.++++. +.+.+++..++..++++++.+.|++ ++++++..+ ..++
T Consensus 254 -~~~~~~~~--~~----~~~-~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~~~~ 322 (390)
T 1d2f_A 254 -DAYLSALK--GR----DGL-SSPSVLALTAHIAAYQQ-GAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIP--QSTY 322 (390)
T ss_dssp -HHHHHHHH--TT----SCC-CSCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCC--SBCS
T ss_pred -HHHHHHHh--hh----ccc-CCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEecC--CccE
Confidence 11111100 00 000 12222333334444443 3456777888889999999999998 777776543 3444
Q ss_pred E-EEEecCCCCCCHHHHHHHHH-hcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHH
Q 011057 376 V-AFSLKDNKRHDEFEVAELLR-RFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHEL 444 (494)
Q Consensus 376 v-~f~~~~~~~~~~~~l~~~L~-~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l 444 (494)
+ .+.+... +.+..++.+.|. ++|+.+....... ..+..++|++++. ++++++.+++.|+++++++
T Consensus 323 ~~~~~~~~~-~~~~~~l~~~l~~~~gi~v~~g~~f~-~~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~~~ 389 (390)
T 1d2f_A 323 LAWLDLRPL-NIDDNALQKALIEQEKVAIMPGYTYG-EEGRGFVRLNAGC--PRSKLEKGVAGLINAIRAV 389 (390)
T ss_dssp EEEEECGGG-CCCHHHHHHHHHHTTCEECEEGGGGC-GGGTTEEEEECCS--CHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcccc-CCCHHHHHHHHHHHcCEEeeCccccC-CCCCCeEEEEecC--CHHHHHHHHHHHHHHHHhh
Confidence 4 4666421 246788999999 6899885433221 1234679999985 5678888888887777654
No 97
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.94 E-value=1.9e-25 Score=227.60 Aligned_cols=346 Identities=12% Similarity=0.015 Sum_probs=238.9
Q ss_pred CCcccccccC-CChHHHHHHHHHHhcc---cCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCc-ceeeecChhHHHH
Q 011057 57 RLNLASFVTT-WMEPECDKLMMAAINK---NYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETA-VGVGTVGSSEAIM 131 (494)
Q Consensus 57 ~~~~~~~~~~-~~~p~~~~~~~~~~~~---~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~-~~~~t~ggt~a~~ 131 (494)
.++|..+.+. .++|.+.+++.+.++. ....|....+..++++++.+++.+.+|.+.+ .. .+++|+|+++|+.
T Consensus 39 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~---~~~~v~~~~g~~~a~~ 115 (429)
T 1yiz_A 39 PLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTIN---PMTEVLVTVGAYEALY 115 (429)
T ss_dssp CEECCSSSCSSCCCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCC---TTTSEEEESHHHHHHH
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCC---CcCCEEEecChHHHHH
Confidence 3444444433 3467888999888865 2234444456788999999999888886532 13 5899999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCC---------ccccCHHHHHHhhhhC
Q 011057 132 LAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEG---------YYVMDPVKAVEMVDEN 202 (494)
Q Consensus 132 ~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~---------~~~~d~~~L~~~i~~~ 202 (494)
+++.++..+ +++|+++.++|..+...++..|++++.++++++ ++.+|+++|+++++++
T Consensus 116 ~~~~~~~~~-------------gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 182 (429)
T 1yiz_A 116 ATIQGHVDE-------------GDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEK 182 (429)
T ss_dssp HHHHHHCCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTT
T ss_pred HHHHHhcCC-------------CCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhccC
Confidence 888877321 258999999999999999999999999998754 4679999999999888
Q ss_pred CeEEEEeeCCCCcccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCc-ccc-cc-cCCCceEEEEcCc
Q 011057 203 TICVAAILGSTLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPE-LEW-DF-RLPLVKSINVSGH 276 (494)
Q Consensus 203 t~~vv~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~-~~~-~~-~~~~~D~~~~~~h 276 (494)
+++|++++++||||.+.| +++|.++|+++ |+++++|++|+++.. .... ... .+ ...+.|++..+++
T Consensus 183 ~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~s~s 254 (429)
T 1yiz_A 183 TKMIIINTPHNPLGKVMDRAELEVVANLCKKW------NVLCVSDEVYEHMVF--EPFEHIRICTLPGMWERTITIGSAG 254 (429)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBC--TTSCCCCGGGSTTTGGGEEEEEEHH
T ss_pred ceEEEECCCCCCCCccCCHHHHHHHHHHHHHc------CcEEEEecccccccc--CCCCCcChhhccCCcCceEEEecch
Confidence 899999999999999974 89999999999 999999999987542 1110 011 11 1235789999999
Q ss_pred ccCC-cCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHh----c--HhHHHHHHHHHHH
Q 011057 277 KYGL-VYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRL----G--FEGYRNVMENCHE 349 (494)
Q Consensus 277 K~l~-~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l----~--~~g~~~~~~~~~~ 349 (494)
|++. ++.++|++++++. .+ +.+.....+. .++.+.....++.++|+.. + .+.+++..++..+
T Consensus 255 K~~~~~G~r~G~~~~~~~-~~-~~l~~~~~~~---------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 323 (429)
T 1yiz_A 255 KTFSLTGWKIGWAYGPEA-LL-KNLQMVHQNC---------VYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMA 323 (429)
T ss_dssp HHHTCGGGCCEEEESCHH-HH-HHHHHHHHTT---------TCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHH
T ss_pred hccCCCCcceEEEEeCHH-HH-HHHHHHHhhc---------ccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHH
Confidence 9875 3445899987532 22 2211111110 0122223334444555541 2 3456778888889
Q ss_pred HHHHHHHHHhhCCCeEEeecCCCccEEEEEecCCC----------CCCHHHHHHHHH-hcCceeeccccCCCC----CCc
Q 011057 350 NAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNK----------RHDEFEVAELLR-RFGWIVPAYTMPADA----QHI 414 (494)
Q Consensus 350 ~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~----------~~~~~~l~~~L~-~~Gi~v~~~~~~~~~----~~~ 414 (494)
+++++.+.|++++ +++..+. ...++.+.+.... ..+..++.++|. ++|+.+......... .+.
T Consensus 324 ~~~~l~~~L~~~g-~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~ 401 (429)
T 1yiz_A 324 KRDYMASFLAEVG-MNPTVPQ-GGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGE 401 (429)
T ss_dssp HHHHHHHHHHHHT-CEEEECS-BSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTT
T ss_pred HHHHHHHHHHhCC-CcccCCC-cceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCC
Confidence 9999999999885 8876543 3457777774310 034678888886 789987543211100 024
Q ss_pred eEEEEEeccCCChHHHHHHHHHHHHHH
Q 011057 415 TVLRVVIREDFSRTLAERLVLDITKVL 441 (494)
Q Consensus 415 ~~lRvs~~~~~t~~~id~~i~~l~~~~ 441 (494)
.++|+++. .++++++++++.|++++
T Consensus 402 ~~iRis~~--~~~e~i~~~l~~l~~~l 426 (429)
T 1yiz_A 402 DFVRYCFF--KKDENLQKAAEILRKWK 426 (429)
T ss_dssp TEEEEECC--SCHHHHHHHHHHHHHHS
T ss_pred CeEEEEec--CCHHHHHHHHHHHHHhc
Confidence 68999987 37888888887777654
No 98
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.94 E-value=1.3e-25 Score=226.62 Aligned_cols=339 Identities=13% Similarity=0.008 Sum_probs=230.4
Q ss_pred CCcccccccC---CChHHHHHHHHHHhcccC---CCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHH
Q 011057 57 RLNLASFVTT---WMEPECDKLMMAAINKNY---VDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAI 130 (494)
Q Consensus 57 ~~~~~~~~~~---~~~p~~~~~~~~~~~~~~---~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~ 130 (494)
.++|.++.+. ++++.+.+++.+.+.... ..|...++..++++. +++++|.++ ..+++|+|+++++
T Consensus 34 ~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~----la~~~g~~~-----~~v~~~~g~~~al 104 (397)
T 2zyj_A 34 ILSFAGGLPAPELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAF----VAEWIGVRP-----EEVLITTGSQQAL 104 (397)
T ss_dssp CEEESSCCCCGGGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHH----HHHHHTSCG-----GGEEEESHHHHHH
T ss_pred ceecCCCCCCchhCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHH----HHHHhCCCh-----hhEEEeccHHHHH
Confidence 3455554433 246778888887776532 334443455555554 777778654 3589999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhh-CCeEE-EE
Q 011057 131 MLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDE-NTICV-AA 208 (494)
Q Consensus 131 ~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~t~~v-v~ 208 (494)
.+++.++..+ +++|+++.++|..+...++..|++++.++++++ + +|+++|++++++ ++++| ++
T Consensus 105 ~~~~~~~~~~-------------gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~-~-~d~~~l~~~l~~~~~~~v~~~ 169 (397)
T 2zyj_A 105 DLVGKVFLDE-------------GSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEE-G-PDLDALEEVLKRERPRFLYLI 169 (397)
T ss_dssp HHHHHHHCCT-------------TCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT-E-ECHHHHHHHHHHCCCSCEEEC
T ss_pred HHHHHHhCCC-------------CCEEEEeCCCcHHHHHHHHHcCCEEEecCcCCC-C-CCHHHHHHHHhhcCCeEEEEC
Confidence 9888876321 258999999999999999999999999998764 3 999999999987 78877 46
Q ss_pred eeCCCCcccccCH---HHHHHHHHHhhcccCCCceEEEecccccccccccCCc-cc-ccccCC---CceEEEEcCcccCC
Q 011057 209 ILGSTLNGEFEDV---KLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPE-LE-WDFRLP---LVKSINVSGHKYGL 280 (494)
Q Consensus 209 ~~~~~~tG~~~~l---~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~-~~-~~~~~~---~~D~~~~~~hK~l~ 280 (494)
++++||||.+.|. ++|.++|+++ |+++++|++|+.+.. .... .. ..+... ...++..++||+++
T Consensus 170 ~~~~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 241 (397)
T 2zyj_A 170 PSFQNPTGGLTPLPARKRLLQMVMER------GLVVVEDDAYRELYF--GEARLPSLFELAREAGYPGVIYLGSFSKVLS 241 (397)
T ss_dssp CBSCTTTCCBCCHHHHHHHHHHHHHH------TCCEEEECTTTTCBC--SSCCCCCHHHHHHHHTCCCEEEEEESTTTTC
T ss_pred CCCcCCCCCcCCHHHHHHHHHHHHHc------CCEEEEeCCcccccC--CCCCCCchhhhCcccCCCeEEEEeccccccc
Confidence 8999999999765 4899999999 999999999987642 1110 00 011111 23477789999998
Q ss_pred cCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcH---hHHHHHHHHHHHHHHHHHHH
Q 011057 281 VYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGF---EGYRNVMENCHENAMVLKEG 357 (494)
Q Consensus 281 ~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~---~g~~~~~~~~~~~a~~l~~~ 357 (494)
++.++|++++++. .. +.+...... .++ ++ + .+++.++...+.. +.+++..+++.++++++.+.
T Consensus 242 ~G~r~G~~~~~~~-~~-~~l~~~~~~-------~~~-~~-~---~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 307 (397)
T 2zyj_A 242 PGLRVAFAVAHPE-AL-QKLVQAKQG-------ADL-HT-P---MLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHA 307 (397)
T ss_dssp GGGCCEEEECCHH-HH-HHHHHHHHH-------HHS-SC-C---HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeEEEecCHH-HH-HHHHHHHHh-------hcC-CC-C---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5567899987532 22 211110000 000 11 1 2223333333332 34667777888899999999
Q ss_pred Hhh-CC-CeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCC-CCCCceEEEEEeccCCChHHHHHHH
Q 011057 358 LEK-TG-RFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPA-DAQHITVLRVVIREDFSRTLAERLV 434 (494)
Q Consensus 358 L~~-~~-~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~-~~~~~~~lRvs~~~~~t~~~id~~i 434 (494)
|++ ++ ++++..+. ...++.+.+.. +.+..++.++|.++|+.+....... ...+..++|++++.. +++++++++
T Consensus 308 L~~~~~~g~~~~~~~-~g~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~~~i~~~~ 383 (397)
T 2zyj_A 308 LDREVPKEVRYTRPK-GGMFVWMELPK--GLSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATL-DREGIAEGV 383 (397)
T ss_dssp HHHHSCTTSEECCCS-BSSEEEEECST--TCCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSS-CHHHHHHHH
T ss_pred HHHHCCCCeEEccCC-ccEEEEEEcCC--CCCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCC-CHHHHHHHH
Confidence 987 45 48876543 45677777743 4578899999999999985432211 112346899999864 889999999
Q ss_pred HHHHHHHHHHh
Q 011057 435 LDITKVLHELD 445 (494)
Q Consensus 435 ~~l~~~~~~l~ 445 (494)
+.|+++++++.
T Consensus 384 ~~l~~~l~~~~ 394 (397)
T 2zyj_A 384 RRLGRALKGLL 394 (397)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887664
No 99
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.94 E-value=7.3e-26 Score=228.62 Aligned_cols=329 Identities=15% Similarity=0.066 Sum_probs=223.7
Q ss_pred ChHHHHHHHHHHhcccCCCCCC---ChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHH
Q 011057 68 MEPECDKLMMAAINKNYVDMDE---YPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNK 144 (494)
Q Consensus 68 ~~p~~~~~~~~~~~~~~~~~~~---~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~ 144 (494)
++|.+.+++.+++.....+... ..+......++++.+++++|.+. .+++|+ |++++..++.++... .
T Consensus 61 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~------~i~~~s-G~~a~~~~~~~l~~~-~-- 130 (401)
T 2bwn_A 61 QHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEA------ALVFSS-AYNANDATLSTLRVL-F-- 130 (401)
T ss_dssp GCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSE------EEEESC-HHHHHHHHHHHHHHH-S--
T ss_pred CCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCCc------EEEECC-cHHHHHHHHHHHhcC-C--
Confidence 4577888888887653221111 11223344567788999998742 355554 555777666554221 0
Q ss_pred HHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhh----hCCeEEEEeeCCCCcccccC
Q 011057 145 RKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVD----ENTICVAAILGSTLNGEFED 220 (494)
Q Consensus 145 ~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~----~~t~~vv~~~~~~~tG~~~~ 220 (494)
. +++|+++.++|.++...++..|++++.++.+ |+++|+++++ +++++|++++++|+||.+.|
T Consensus 131 ---~-----gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~ 196 (401)
T 2bwn_A 131 ---P-----GLIIYSDSLNHASMIEGIKRNAGPKRIFRHN------DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP 196 (401)
T ss_dssp ---T-----TCEEEEETTCCHHHHHHHHHSCCCEEEECTT------CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC
T ss_pred ---C-----CCEEEECchhhHHHHHHHHHcCCeEEEEcCC------CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCC
Confidence 1 2589999999999999999999999999863 6788888887 57899999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCceEEEecccccccc-cccCCcccccccC-CCceEEEEcCcccCCcCCceEEEEEeCCCCccc
Q 011057 221 VKLLNDLLAEKNKETGWDTPIHVDAASGGFIA-PFLYPELEWDFRL-PLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPE 298 (494)
Q Consensus 221 l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~-~~~~~~~~~~~~~-~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~ 298 (494)
+++|.++|+++ ++++++|++|+.+.. +...+ ....... ...|.+..+++|++..+ | |+++.+ +... .
T Consensus 197 l~~i~~l~~~~------~~~li~Dea~~~g~~~~~g~~-~~~~~~~~~~~~i~~~s~sK~~~~~-G-G~~~~~-~~~~-~ 265 (401)
T 2bwn_A 197 IKEICDIAEEF------GALTYIDEVHAVGMYGPRGAG-VAERDGLMHRIDIFNGTLAKAYGVF-G-GYIAAS-ARMV-D 265 (401)
T ss_dssp HHHHHHHHHHH------TCEEEEECTTTTTTSSTTSCC-HHHHHTCGGGCSEEEEESSSTTCSC-C-EEEEEC-HHHH-H
T ss_pred HHHHHHHHHHc------CCEEEEeccccccccCCCCce-eeeccCccccCcEEEeechhhccCC-C-CEEecC-HHHH-H
Confidence 99999999999 999999999985432 11000 0001111 24678888999998653 4 777653 2221 1
Q ss_pred cccc-ccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccEEE
Q 011057 299 ELIF-HINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVA 377 (494)
Q Consensus 299 ~~~~-~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~ 377 (494)
.+.. ...+. +....+.....++.++++.+...++++..++..++++++.+.|+++ ++++..+ ..+++.
T Consensus 266 ~l~~~~~~~~--------~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~--~~~~~~ 334 (401)
T 2bwn_A 266 AVRSYAPGFI--------FSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPIIDH--GSHIVP 334 (401)
T ss_dssp HHHHHCHHHH--------TSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCC--SSSCEE
T ss_pred HHHHhCcCce--------ecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC-CCcccCC--CCCeEE
Confidence 1111 00110 1111123455666778887776677888999999999999999998 5877644 356888
Q ss_pred EEecCCCCCCHHHHHHHHH-hcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHH
Q 011057 378 FSLKDNKRHDEFEVAELLR-RFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHEL 444 (494)
Q Consensus 378 f~~~~~~~~~~~~l~~~L~-~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l 444 (494)
+.+.. +.+..++.++|. ++|+.+.....+....+..++|++++..++.++++++++.|+++++++
T Consensus 335 ~~~~~--~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~~ 400 (401)
T 2bwn_A 335 VVIGD--PVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWARC 400 (401)
T ss_dssp EECCC--HHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC---
T ss_pred EEeCC--hHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Confidence 88742 235678999996 789998654443322244689999998899999999999998887543
No 100
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.94 E-value=1.4e-26 Score=231.53 Aligned_cols=328 Identities=14% Similarity=0.061 Sum_probs=216.5
Q ss_pred hHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhc
Q 011057 69 EPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAE 148 (494)
Q Consensus 69 ~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~ 148 (494)
.+.+.+++.+.+.... +...+...+ +++.+++++|.+. +++|+|||+|+.+++.++..
T Consensus 16 ~~~~~~a~~~~~~~~~--~~~~~~~~~----l~~~la~~~~~~~-------~i~~~sgt~al~~~l~~l~~--------- 73 (373)
T 3frk_A 16 EYEIKFKFEEIYKRNW--FILGDEDKK----FEQEFADYCNVNY-------CIGCGNGLDALHLILKGYDI--------- 73 (373)
T ss_dssp HHHHHHHHHHHHHHTC--CSSSHHHHH----HHHHHHHHHTSSE-------EEEESCHHHHHHHHHHHTTC---------
T ss_pred CHHHHHHHHHHHHCCC--ccCCchHHH----HHHHHHHHhCCCe-------EEEeCCHHHHHHHHHHHcCC---------
Confidence 3557777777766543 333444444 5556889999863 89999999999988877611
Q ss_pred CCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHHH
Q 011057 149 GKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLL 228 (494)
Q Consensus 149 g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~la 228 (494)
..+++|+++.++|.++..+++..|++++.++++++++.+|+++|++++++++++|+ ++|++|...|+++|.++|
T Consensus 74 ---~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~l~~i~~l~ 147 (373)
T 3frk_A 74 ---GFGDEVIVPSNTFIATALAVSYTGAKPIFVEPDIRTYNIDPSLIESAITEKTKAII---AVHLYGQPADMDEIKRIA 147 (373)
T ss_dssp ---CTTCEEEEETTSCTHHHHHHHHHSCEEEEECEETTTTEECGGGTGGGCCTTEEEEE---EECCTTCCCCHHHHHHHH
T ss_pred ---CCcCEEEECCCCcHHHHHHHHHcCCEEEEEeccccccCcCHHHHHHhcCCCCeEEE---EECCCcCcccHHHHHHHH
Confidence 01368999999999999999999999999999855689999999999988888776 677999999999999999
Q ss_pred HHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEc--CcccCCcCCceEEEEEeCCCCcccccccccCC
Q 011057 229 AEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVS--GHKYGLVYAGIGWVIWRNKEDLPEELIFHINY 306 (494)
Q Consensus 229 ~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~--~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y 306 (494)
+++ |+++++|+||+.+.. +... ..+ ...|+++++ .||++.++...|+++.+++... ..+.....+
T Consensus 148 ~~~------~~~li~D~a~~~g~~-~~~~----~~~-~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~-~~~~~~~~~ 214 (373)
T 3frk_A 148 KKY------NLKLIEDAAQAHGSL-YKGM----KVG-SLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLA-EKIKALSNY 214 (373)
T ss_dssp HHH------TCEEEEECTTCTTCE-ETTE----ETT-SSSSEEEEECCTTSSSCCSSSCEEEEESCHHHH-HHHHHHHBT
T ss_pred HHc------CCEEEEECCcccCCE-ECCE----ecc-ccccEEEEeCcCCCccCccceeEEEEeCCHHHH-HHHHHHHhc
Confidence 999 999999999987543 2111 111 125666666 7799865344566665543221 111110000
Q ss_pred CCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCC--CccEEEEEecCCC
Q 011057 307 LGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDE--GVPLVAFSLKDNK 384 (494)
Q Consensus 307 ~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~--~~~~v~f~~~~~~ 384 (494)
...........+.. ..+..+.+++.....+++++..++..++++++.+.|++++ +++...+. ..+++.|.+...
T Consensus 215 g~~~~~~~~~~g~~--~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~- 290 (373)
T 3frk_A 215 GSEKKYHHIYKGFN--SRLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIRSE- 290 (373)
T ss_dssp TCSBTTBCCSCCCB--CCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEEES-
T ss_pred CcccCCcccccccc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEEeC-
Confidence 00000000000111 1112233344444445667788889999999999999988 77643321 122222333222
Q ss_pred CCCHHHHHHHHHhcCceeeccc-cCCCC-------------------CCceEEEEEeccCCChHHHHHHHHHHHHHHHH
Q 011057 385 RHDEFEVAELLRRFGWIVPAYT-MPADA-------------------QHITVLRVVIREDFSRTLAERLVLDITKVLHE 443 (494)
Q Consensus 385 ~~~~~~l~~~L~~~Gi~v~~~~-~~~~~-------------------~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~ 443 (494)
+..++.+.|.++||.++... .|... .....+|++++..+|.+|++++++.|++++.+
T Consensus 291 --~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~ 367 (373)
T 3frk_A 291 --KRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLE 367 (373)
T ss_dssp --SHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC--
T ss_pred --CHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhh
Confidence 57899999999999886443 11100 01268999999999999999988887766543
No 101
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.94 E-value=8.5e-26 Score=228.45 Aligned_cols=345 Identities=12% Similarity=-0.019 Sum_probs=235.0
Q ss_pred CCCCcccccccCC-ChHHHHHHHHHHhccc-CCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHH
Q 011057 55 NPRLNLASFVTTW-MEPECDKLMMAAINKN-YVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIML 132 (494)
Q Consensus 55 ~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~ 132 (494)
+..++|..+.+.. ++|.+.+++.+.++.. ...|...++..++++.+.+++++.+|.+.+. ...+++|+|+++|+.+
T Consensus 47 ~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~--~~~v~~t~G~~~al~~ 124 (404)
T 2o1b_A 47 LPLINMAVGIPDGPTPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDK--EDEVCILYGTKNGLVA 124 (404)
T ss_dssp SCCEECCCCSCSSCCCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCT--TTSEEEESSHHHHHHH
T ss_pred CCEEecCCcCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--cccEEEcCCcHHHHHH
Confidence 3345555554443 4678888888887542 2234444577888888888888888986311 0248999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCC
Q 011057 133 AGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGS 212 (494)
Q Consensus 133 a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~ 212 (494)
++.++..+ +++|+++.++|..+...++..|++++.++++++++.+|+++|++++++++++|++++++
T Consensus 125 ~~~~l~~~-------------gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~ 191 (404)
T 2o1b_A 125 VPTCVINP-------------GDYVLLPDPGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTYPN 191 (404)
T ss_dssp HHHHHCCT-------------TCEEEEEESCCSSHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHHEEEEEECSSC
T ss_pred HHHHhcCC-------------CCEEEEcCCCchhHHHHHHHCCCEEEEeccCcccCcCCHHHHHHhhccCceEEEEcCCC
Confidence 88877321 25899999999999999999999999999876446789999999998888999999999
Q ss_pred CCcccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcc-ccccc-CCCceEEEEcCcccCC-cCCceE
Q 011057 213 TLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPEL-EWDFR-LPLVKSINVSGHKYGL-VYAGIG 286 (494)
Q Consensus 213 ~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~-~~~~D~~~~~~hK~l~-~p~g~G 286 (494)
||||.+.| +++|.++|+++ ++++++|++|+.+.. ..... ...+. ..+.+++..+++|+++ ++.++|
T Consensus 192 nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G 263 (404)
T 2o1b_A 192 NPTGSTATKEVFDEAIAKFKGT------DTKIVHDFAYGAFGF--DAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVG 263 (404)
T ss_dssp TTTCCCCCHHHHHHHHHHHTTS------SCEEEEECTTTTCBS--SSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCE
T ss_pred CCCCccCCHHHHHHHHHHHHHc------CCEEEEEccchhccc--CCCCCChhhcCCCCCCEEEEEecchhccCchhheE
Confidence 99999975 78899999999 999999999987642 11100 01110 1146788899999985 556789
Q ss_pred EEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEE
Q 011057 287 WVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNI 366 (494)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~ 366 (494)
+++.++ ..+ +.+....... .++.+.....++.++++. +.+.+++..++..++++++.+.|++++ +++
T Consensus 264 ~~~~~~-~~~-~~l~~~~~~~---------~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~ 330 (404)
T 2o1b_A 264 FAVGNK-DMI-QALKKYQTHT---------NAGMFGALQDAAIYALNH-YDDFLEEQSNVFKTRRDRFEAMLAKAD-LPF 330 (404)
T ss_dssp EEEECH-HHH-HHHHHHHHHH---------CCCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHTT-CCE
T ss_pred eEecCH-HHH-HHHHHHHhhc---------cCCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHhcC-Cee
Confidence 987643 222 2111110000 012222333333334433 245677788888899999999999984 877
Q ss_pred eecCCCcc-EEEEEecCCCCCCHHHHHHHHH-hcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHH
Q 011057 367 VSKDEGVP-LVAFSLKDNKRHDEFEVAELLR-RFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLH 442 (494)
Q Consensus 367 ~~~~~~~~-~v~f~~~~~~~~~~~~l~~~L~-~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~ 442 (494)
..+ ..+ ++.+.++ .+.+..++.++|. ++|+.+....... ..+..++|++++. ++++++.+++.|+++++
T Consensus 331 ~~~--~~g~~~~~~~~--~~~~~~~l~~~l~~~~gi~v~~g~~f~-~~~~~~iRis~~~--~~e~l~~~l~~l~~~l~ 401 (404)
T 2o1b_A 331 VHA--KGGIYVWLETP--PGYDSEQFEQFLVQEKSILVAPGKPFG-ENGNRYVRISLAL--DDQKLDEAAIRLTELAY 401 (404)
T ss_dssp ECC--CBSSEEEEECC--TTCCHHHHHHHHHHHHCEECEESGGGC-GGGTTEEEEECCS--CTTHHHHHHHHHHGGGG
T ss_pred cCC--CcceEEEEeCC--CCCCHHHHHHHHHHHCCEEEeCchhhC-cCCCCeEEEEEcC--CHHHHHHHHHHHHHHHH
Confidence 644 334 4566764 2457788999987 5799885433221 1234679999985 67777777766666543
No 102
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.94 E-value=1.5e-25 Score=227.62 Aligned_cols=340 Identities=12% Similarity=0.061 Sum_probs=230.7
Q ss_pred hHHHHHHHHHHhcccCCC-CCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 011057 69 EPECDKLMMAAINKNYVD-MDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA 147 (494)
Q Consensus 69 ~p~~~~~~~~~~~~~~~~-~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~ 147 (494)
+|.+.+++.+++...... +....+..++.+++++++++++|.+. .+++++|++|+.+++.++...
T Consensus 15 ~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~-------~i~~~~gt~al~~~~~~~~~~------- 80 (418)
T 2c81_A 15 SDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVPY-------CVPTTSGSTALMLALEALGIG------- 80 (418)
T ss_dssp CHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHTTCC-------
T ss_pred CHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHcCCC-------
Confidence 578888888888664332 43334555666778888999999863 778888999999888776210
Q ss_pred cCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHH
Q 011057 148 EGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDL 227 (494)
Q Consensus 148 ~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~l 227 (494)
.+++|+++.++|.++..+++..|++++.++++++++.+|+++|++++++++++|++ ++++|...++++|.++
T Consensus 81 -----~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~---~~~~G~~~~~~~i~~~ 152 (418)
T 2c81_A 81 -----EGDEVIVPSLTWIATATAVLNVNALPVFVDVEADTYCIDPQLIKSAITDKTKAIIP---VHLFGSMANMDEINEI 152 (418)
T ss_dssp -----TTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHGGGCCTTEEEECC---BCCTTCCCCHHHHHHH
T ss_pred -----CcCEEEECCCccHhHHHHHHHcCCEEEEEecCCCCCCcCHHHHHHhhCCCCeEEEE---eCCcCCcccHHHHHHH
Confidence 12589999999999999999999999999998645889999999999888887765 4589999999999999
Q ss_pred HHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccccccCCC
Q 011057 228 LAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYL 307 (494)
Q Consensus 228 a~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~ 307 (494)
|+++ ++++|+|++|+.+.. +...... ....++++++++||++.++ ++|+++.+++... +.+.....+.
T Consensus 153 ~~~~------~~~li~D~a~~~~~~-~~~~~~~---~~~~~~~~s~s~~K~~~~g-~~g~~~~~~~~l~-~~~~~~~~~~ 220 (418)
T 2c81_A 153 AQEH------NLFVIEDCAQSHGSV-WNNQRAG---TIGDIGAFSCQQGKVLTAG-EGGIIVTKNPRLF-ELIQQLRADS 220 (418)
T ss_dssp HHHT------TCEEEEECTTCTTCE-ETTEETT---SSSSEEEEECCTTSSSCSS-SCEEEEESCHHHH-HHHHHHHBTT
T ss_pred HHHC------CCEEEEECcccccCc-cCCEecc---cccceEEEeccCCcccCCC-CeEEEEECCHHHH-HHHHHHHHhC
Confidence 9999 999999999998742 1111000 1123677777779998764 6777776543322 1111100000
Q ss_pred CC-------CCCCc-------ccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCC-
Q 011057 308 GA-------DQPTF-------TLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEG- 372 (494)
Q Consensus 308 ~~-------~~~~~-------~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~- 372 (494)
.. ....+ ...+.......+ .+++.....+++++..++..++++++.+.|++++++++..++..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~ 298 (418)
T 2c81_A 221 RVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEF--QSAILLDQLQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQV 298 (418)
T ss_dssp EEECSCGGGCCTTCBSEEECCSSCCCBCCCCHH--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTE
T ss_pred ccccccccccccchhhccccccccCcCCCcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCC
Confidence 00 00000 000111001111 12222222345677888888899999999999977888743322
Q ss_pred ---c-cEEEEEecCC--CCCCHHHHHHHHHhc-Cce---eeccccCCC---------------------------CC---
Q 011057 373 ---V-PLVAFSLKDN--KRHDEFEVAELLRRF-GWI---VPAYTMPAD---------------------------AQ--- 412 (494)
Q Consensus 373 ---~-~~v~f~~~~~--~~~~~~~l~~~L~~~-Gi~---v~~~~~~~~---------------------------~~--- 412 (494)
. .++.+.++.. .+.+..++.+.|.++ ||. ++.+..|.. ..
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (418)
T 2c81_A 299 SRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVS 378 (418)
T ss_dssp EECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHH
T ss_pred cccccEEEEEEEccccccccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHH
Confidence 1 3566777420 145788999999999 999 765432210 00
Q ss_pred ---CceEEEEEeccCC-ChHHHHHHHHHHHHHHHHH
Q 011057 413 ---HITVLRVVIREDF-SRTLAERLVLDITKVLHEL 444 (494)
Q Consensus 413 ---~~~~lRvs~~~~~-t~~~id~~i~~l~~~~~~l 444 (494)
....+|++++..+ |.+|++++++.|+++++++
T Consensus 379 ~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~ 414 (418)
T 2c81_A 379 ERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKF 414 (418)
T ss_dssp HHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhh
Confidence 0258999999999 9999999999999887654
No 103
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.94 E-value=3.8e-25 Score=222.85 Aligned_cols=350 Identities=15% Similarity=0.029 Sum_probs=236.8
Q ss_pred cCCCCCcccccccCC-ChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCC-CCCCCCc-ceeeecChhHH
Q 011057 53 DGNPRLNLASFVTTW-MEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAP-LEDSETA-VGVGTVGSSEA 129 (494)
Q Consensus 53 ~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~-~~~~~~~-~~~~t~ggt~a 129 (494)
+++..++|..+.+.. .+|.+.+++.+.+. ....|....+..++++++.+++++.+|.+ .+ .. .+++|+|++++
T Consensus 28 ~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~-~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~---~~~~i~~t~g~~~a 103 (396)
T 3jtx_A 28 EGMEAVPLHIGEPKHPTPKVITDALTASLH-ELEKYPLTAGLPELRQACANWLKRRYDGLTVD---ADNEILPVLGSREA 103 (396)
T ss_dssp TTCCCEECSCCSCCSCCCHHHHHHHHHTGG-GGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCC---TTTSEEEESSHHHH
T ss_pred cCCCeEEeCCcCCCCCCCHHHHHHHHHHhh-hccCCCCCCCcHHHHHHHHHHHHHhcCCCCCC---CCCeEEEcCCcHHH
Confidence 455666777665544 46788888888775 33345444567899999999999998965 21 13 59999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEe
Q 011057 130 IMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAI 209 (494)
Q Consensus 130 ~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~ 209 (494)
+.+++.++... |....+++|+++.++|..+...++..|++++.++++++++.+|+++|++++.+++++|+++
T Consensus 104 l~~~~~~~~~~--------g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~~~~~v~l~ 175 (396)
T 3jtx_A 104 LFSFVQTVLNP--------VSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFVC 175 (396)
T ss_dssp HHHHHHHHCCC-----------CCCCEEEEEESCCHHHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHTEEEEEEE
T ss_pred HHHHHHHHhCC--------CCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhccCcEEEEEE
Confidence 99888877321 1000025899999999999999999999999999976557889999999999899999999
Q ss_pred eCCCCcccccCHHH---HHHHHHHhhcccCCCceEEEecccccccccccCCccccc----cc-CCCceEEEEcCccc-CC
Q 011057 210 LGSTLNGEFEDVKL---LNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWD----FR-LPLVKSINVSGHKY-GL 280 (494)
Q Consensus 210 ~~~~~tG~~~~l~~---I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~----~~-~~~~D~~~~~~hK~-l~ 280 (494)
+++||||.+.|.++ |+++|+++ ++++++|++|+.+...-..+..... +. ..+.+++..+++|. ++
T Consensus 176 ~p~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 249 (396)
T 3jtx_A 176 SPNNPSGSVLDLDGWKEVFDLQDKY------GFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNV 249 (396)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHH------CCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHc------CCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCC
Confidence 99999999976555 99999999 9999999999875421000100000 00 13567888899994 66
Q ss_pred cCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhh
Q 011057 281 VYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 360 (494)
Q Consensus 281 ~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~ 360 (494)
++.++|+++... ... ..+.....+. .++.+.....++.++++. .+.+++..++..++++++.+.|++
T Consensus 250 ~G~r~G~~~~~~-~~~-~~~~~~~~~~---------~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~ 316 (396)
T 3jtx_A 250 PGLRSGFVAGDA-ELL-KNFLLYRTYH---------GSAMSIPVQRASIAAWDD--EQHVIDNRRLYQEKFERVIPILQQ 316 (396)
T ss_dssp GGGCCEEEEECH-HHH-HHHHHHHHHH---------TCCCCHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccceEEEEeCH-HHH-HHHHHHHhhc---------ccCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 778889887533 222 2111110000 112222333333333432 345677788888899999999987
Q ss_pred CCCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHH-hcCceeeccccCCC-----CCCceEEEEEeccCCChHHHHHHH
Q 011057 361 TGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLR-RFGWIVPAYTMPAD-----AQHITVLRVVIREDFSRTLAERLV 434 (494)
Q Consensus 361 ~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~-~~Gi~v~~~~~~~~-----~~~~~~lRvs~~~~~t~~~id~~i 434 (494)
. +.+..+. ...++.+.+.. .+..++.++|. ++|+.+........ ..+..++|++++. +.++++.++
T Consensus 317 ~--~~~~~~~-~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~--~~~~i~~~l 388 (396)
T 3jtx_A 317 V--FDVKLPD-ASFYIWLKVPD---GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA--DVATCVKAA 388 (396)
T ss_dssp T--SCCCCCS-SSSEEEEECTT---SCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS--CHHHHHHHH
T ss_pred c--CCccCCC-eeEEEEEECCC---CCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC--CHHHHHHHH
Confidence 6 3333332 34466667643 46788999885 56998855433221 1345789999875 888888888
Q ss_pred HHHHHHH
Q 011057 435 LDITKVL 441 (494)
Q Consensus 435 ~~l~~~~ 441 (494)
+.|++++
T Consensus 389 ~~l~~~l 395 (396)
T 3jtx_A 389 EDIVSLY 395 (396)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 7777653
No 104
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.94 E-value=3.9e-25 Score=220.32 Aligned_cols=333 Identities=11% Similarity=0.098 Sum_probs=225.2
Q ss_pred cCCCCCcccccccC-CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHH
Q 011057 53 DGNPRLNLASFVTT-WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIM 131 (494)
Q Consensus 53 ~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~ 131 (494)
+++..++|..+... .++|.+.+++.+.++. ...|.. ++.. ++++.+++++|.++ ..+++|+|+++++.
T Consensus 22 ~~~~~idl~~~~~~~~~~~~v~~a~~~~~~~-~~~y~~-~~~~----~l~~~la~~~~~~~-----~~v~~~~g~~~al~ 90 (364)
T 1lc5_A 22 SPDQLLDFSANINPLGMPVSVKRALIDNLDC-IERYPD-ADYF----HLHQALARHHQVPA-----SWILAGNGETESIF 90 (364)
T ss_dssp CGGGSEECSSCCCTTCCCHHHHHHHHHTGGG-GGSCCC-TTCH----HHHHHHHHHHTSCG-----GGEEEESSHHHHHH
T ss_pred CccceEEeccccCCCCCCHHHHHHHHHHHHH-hhcCCC-CCHH----HHHHHHHHHHCcCH-----HHEEECCCHHHHHH
Confidence 33344455554332 3567888888887754 222322 2333 45566888888864 35899999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccC-CccccCHHHHHHhhhhCCeEEEEee
Q 011057 132 LAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSE-GYYVMDPVKAVEMVDENTICVAAIL 210 (494)
Q Consensus 132 ~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~t~~vv~~~ 210 (494)
+++.++ . +++|+++.++|..+...++..|++++.+++++ +++.+ ++++.+.+.+++++|++++
T Consensus 91 ~~~~~~-~--------------gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~~v~i~~ 154 (364)
T 1lc5_A 91 TVASGL-K--------------PRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL-TDAILEALTPDLDCLFLCT 154 (364)
T ss_dssp HHHHHH-C--------------CSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCC-CTTHHHHCCTTCCEEEEES
T ss_pred HHHHHc-C--------------CCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccch-hHHHHHhccCCCCEEEEeC
Confidence 888776 1 15799999999999999999999999999875 22333 4666666667788899999
Q ss_pred CCCCcccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCC-cCCceE
Q 011057 211 GSTLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGL-VYAGIG 286 (494)
Q Consensus 211 ~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~G 286 (494)
++||||.+.| +++|.++|+++ ++++++|++|+.+... .......+...+.+++..+++|++. ++.++|
T Consensus 155 p~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~--~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 226 (364)
T 1lc5_A 155 PNNPTGLLPERPLLQAIADRCKSL------NINLILDEAFIDFIPH--ETGFIPALKDNPHIWVLRSLTKFYAIPGLRLG 226 (364)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTGGGSTT--CCCSGGGCTTCTTEEEEEESTTTTTCTTTCCE
T ss_pred CCCCCCCCCCHHHHHHHHHHhhhc------CcEEEEECcChhhccC--ccchhhHhccCCCEEEEEECchhhcCCccceE
Confidence 9999999988 89999999999 9999999999876421 1110101122357888899999985 455689
Q ss_pred EEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcH-hHHHHHHHHHHHHHHHHHHHHhhCCCeE
Q 011057 287 WVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGF-EGYRNVMENCHENAMVLKEGLEKTGRFN 365 (494)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~-~g~~~~~~~~~~~a~~l~~~L~~~~~~~ 365 (494)
++++.++... +.+..... . ++. +.++++++...+.. +.+++..++..++++++.+.|+++++++
T Consensus 227 ~~~~~~~~~~-~~l~~~~~-------~----~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 291 (364)
T 1lc5_A 227 YLVNSDDAAM-ARMRRQQM-------P----WSV---NALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLT 291 (364)
T ss_dssp EEECCCHHHH-HHHHHHSC-------T----TCS---CHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred EEEECCHHHH-HHHHHhCC-------C----CCC---CHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 9883333322 11111100 0 112 22334444444432 4567778888889999999999987788
Q ss_pred EeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHHh
Q 011057 366 IVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELD 445 (494)
Q Consensus 366 ~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~ 445 (494)
+.. + ..+++.+.++. +..++.+.|.++|+.+....... ..+..++|++++ +.++++++++.|+++++.+.
T Consensus 292 ~~~-~-~g~~~~~~~~~----~~~~l~~~l~~~gi~v~~g~~~~-~~~~~~iRis~~---~~~~~~~l~~~l~~~~~~~~ 361 (364)
T 1lc5_A 292 VYP-G-RANYLLLRCER----EDIDLQRRLLTQRILIRSCANYP-GLDSRYYRVAIR---SAAQNERLLAALRNVLTGIA 361 (364)
T ss_dssp ECC-C-SSSEEEEEESC----TTCCHHHHHHTTTEECEECTTST-TCCTTEEEEECC---CHHHHHHHHHHHHHHC----
T ss_pred ECC-C-CCeEEEEECCC----cHHHHHHHHHHCCcEEeeCcccC-CCCCCEEEEEeC---CHHHHHHHHHHHHHHhhccc
Confidence 753 2 45677787743 23468899999999885533221 123468999976 67889999999988876654
No 105
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.4e-25 Score=229.93 Aligned_cols=348 Identities=13% Similarity=0.095 Sum_probs=236.5
Q ss_pred cCCCCCcccccccCC-ChHHHHHHHHHHhcc-cCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHH
Q 011057 53 DGNPRLNLASFVTTW-MEPECDKLMMAAINK-NYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAI 130 (494)
Q Consensus 53 ~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~-~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~ 130 (494)
.++..++|+.+.+.. +++.+.+++.++++. ....|....+..++++++.+++.+.+|.+.+ ...+++|+|+++|+
T Consensus 55 ~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~---~~~v~~t~G~~~al 131 (447)
T 3b46_A 55 QGRELINLGQGFFSYSPPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELK---AENVTVTTGANEGI 131 (447)
T ss_dssp TTSCCEECCCCSCSSCCCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCC---GGGEEEESHHHHHH
T ss_pred cCCCeEEccCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCC---hhhEEEeCCHHHHH
Confidence 345556777665543 457788999888875 2234555557788998888888888886542 13589999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCC-----------ccccCHHHHHHhh
Q 011057 131 MLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEG-----------YYVMDPVKAVEMV 199 (494)
Q Consensus 131 ~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~-----------~~~~d~~~L~~~i 199 (494)
.+++.++..+ +++|+++.+.|..+...++..|++++.++++++ ++.+|+++|++++
T Consensus 132 ~~~~~~l~~~-------------gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l 198 (447)
T 3b46_A 132 LSCLMGLLNA-------------GDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAI 198 (447)
T ss_dssp HHHHHHHCCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTC
T ss_pred HHHHHHHcCC-------------CCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhh
Confidence 9988877321 268999999999999999999999999998653 3689999999999
Q ss_pred hhCCeEEEEeeCCCCcccc---cCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCccc-ccc--cCCCceEEEE
Q 011057 200 DENTICVAAILGSTLNGEF---EDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELE-WDF--RLPLVKSINV 273 (494)
Q Consensus 200 ~~~t~~vv~~~~~~~tG~~---~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~--~~~~~D~~~~ 273 (494)
++++++|++++++||||.+ +++++|+++|+++ |+++++|++|+.+.. ..+... ..+ +..+.+++..
T Consensus 199 ~~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~~i~i~ 270 (447)
T 3b46_A 199 TSKTKAVIINTPHNPIGKVFTREELTTLGNICVKH------NVVIISDEVYEHLYF--TDSFTRIATLSPEIGQLTLTVG 270 (447)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBC--SSCCCCGGGSCHHHHTTEEEEE
T ss_pred ccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHc------CcEEEEeccchhccc--CCCCcCHHHcCCCCCCcEEEEe
Confidence 8889999999999999998 4689999999999 999999999987542 111000 011 1235788899
Q ss_pred cCcccCC-cCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhc-HhHHHHHHHHHHHHH
Q 011057 274 SGHKYGL-VYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG-FEGYRNVMENCHENA 351 (494)
Q Consensus 274 ~~hK~l~-~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~-~~g~~~~~~~~~~~a 351 (494)
+++|++. +++++|+++++++..+ +.+.....+. .++.+.....++.++|+... .+.+++..++..+++
T Consensus 271 S~sK~~~~~G~riG~~~~~~~~l~-~~l~~~~~~~---------~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~ 340 (447)
T 3b46_A 271 SAGKSFAATGWRIGWVLSLNAELL-SYAAKAHTRI---------CFASPSPLQEACANSINDALKIGYFEKMRQEYINKF 340 (447)
T ss_dssp EHHHHTTCTTSCCEEEECSCHHHH-HHHHHHHHHH---------TSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cCchhcCCcchhhEEEEeCCHHHH-HHHHHHHhhc---------cCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHH
Confidence 9999985 5667999987333222 1111100000 11222233334444554332 344677888889999
Q ss_pred HHHHHHHhhCCCeEEeecCCCccEEEEEecCCC-------------CCCHHHHHHHHH-hcCceeeccc-cCCC---CCC
Q 011057 352 MVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNK-------------RHDEFEVAELLR-RFGWIVPAYT-MPAD---AQH 413 (494)
Q Consensus 352 ~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~-------------~~~~~~l~~~L~-~~Gi~v~~~~-~~~~---~~~ 413 (494)
+++.+.|++++ +++..+. ...++.+.+.... ..+..+++++|. ++|+.+.... +... ..+
T Consensus 341 ~~l~~~L~~~g-~~~~~~~-~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~ 418 (447)
T 3b46_A 341 KIFTSIFDELG-LPYTAPE-GTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAA 418 (447)
T ss_dssp HHHHHHHHHHT-CCEECCS-BSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGG
T ss_pred HHHHHHHHHCC-CeecCCC-eeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCC
Confidence 99999999985 7776443 3446666664310 134668898886 5799874332 1110 012
Q ss_pred ceEEEEEeccCCChHHHHHHHHHHH
Q 011057 414 ITVLRVVIREDFSRTLAERLVLDIT 438 (494)
Q Consensus 414 ~~~lRvs~~~~~t~~~id~~i~~l~ 438 (494)
..++|+++.. +.++++..++.|+
T Consensus 419 ~~~iRls~~~--~~e~l~~~~~~l~ 441 (447)
T 3b46_A 419 ENLLRFAVCK--DDAYLENAVERLK 441 (447)
T ss_dssp TTEEEEECCS--CHHHHHHHHHHGG
T ss_pred CCEEEEEEeC--CHHHHHHHHHHHH
Confidence 4689999873 6666655554443
No 106
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.94 E-value=1.4e-25 Score=226.91 Aligned_cols=358 Identities=16% Similarity=0.088 Sum_probs=240.0
Q ss_pred HHHHHHHHHhhhhcCCCCCcccccccCCChHHHHHHHHHHhccc-CCCCC------CChhhHHHHHHHHHHHHHHhCCCC
Q 011057 40 EAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKN-YVDMD------EYPVTTELQNRCVNIIARLFNAPL 112 (494)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~------~~~~~~~le~~~~~~la~l~g~~~ 112 (494)
.++++.+.+..... ...+.+....... +|.+.+++.+.+... ...+. ..+....+|+.+++++++++|.+.
T Consensus 9 ~~i~~~~~~~~~~~-~~~i~~~~~~~~~-~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~ 86 (407)
T 2dkj_A 9 EALFELIALEEKRQ-REGLELIASENFV-SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAW 86 (407)
T ss_dssp HHHHHHHHHHHHHH-HTSEECCTTCCCC-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHh-hcceeeccCCCCC-CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCc
Confidence 35555555554332 2334444444333 788889888887541 11111 222333566667789999999864
Q ss_pred CCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHH---HHHHHHcCCeeEEEec--cCCc
Q 011057 113 EDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCW---EKFARYFEVELKEVKL--SEGY 187 (494)
Q Consensus 113 ~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~---~~~~~~~G~~v~~v~~--~~~~ 187 (494)
..+++++|++|+.+++.++.. .+++|+++.++|.++ ..+++..|..++.+++ ++++
T Consensus 87 ------~~i~~~sGt~a~~~~~~~~~~-------------~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 147 (407)
T 2dkj_A 87 ------ANVQPHSGSQANMAVYMALME-------------PGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDT 147 (407)
T ss_dssp ------EECCCSSHHHHHHHHHHHHCC-------------TTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTT
T ss_pred ------ceEEecchHHHHHHHHHHhcC-------------CCCEEEEecccccCccchHHHHHhcCceEEEEecCCCccc
Confidence 234455667899888877722 125899999999776 3455666765555555 4334
Q ss_pred cccCHHHHHHhhhh-CCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCC
Q 011057 188 YVMDPVKAVEMVDE-NTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLP 266 (494)
Q Consensus 188 ~~~d~~~L~~~i~~-~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 266 (494)
+.+|+++|++++++ ++++|+++.++++ ...|+++|.++|+++ |+++++|++|+.+..+. +..... ..
T Consensus 148 ~~~d~~~l~~~l~~~~~~~v~~~~p~~~--~~~~l~~i~~l~~~~------~~~li~Dea~~~g~~~~--~~~~~~--~~ 215 (407)
T 2dkj_A 148 ELIDLEEVRRLALEHRPKVIVAGASAYP--RFWDFKAFREIADEV------GAYLVVDMAHFAGLVAA--GLHPNP--LP 215 (407)
T ss_dssp SSCCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHH------TCEEEEECTTTHHHHHT--TCSCCC--TT
T ss_pred CccCHHHHHHHHhhcCCeEEEEeccccC--CCCCHHHHHHHHHHc------CCEEEEEcccccccccc--CccCCc--cc
Confidence 78999999999985 8888888777775 778999999999999 99999999998743321 111101 12
Q ss_pred CceEEEEcCcccCCcCCceEEEEEeCCCCccccccc-ccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHH
Q 011057 267 LVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIF-HINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVME 345 (494)
Q Consensus 267 ~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~ 345 (494)
.+|+++.++||++.++.+ |+++++++... +.+.. ...+. .++.+.....++.++++.+..+++++..+
T Consensus 216 ~~di~~~s~sK~l~g~~~-G~~~~~~~~~~-~~l~~~~~~~~---------~~~~~~~~~~a~~~al~~~~~~~~~~~~~ 284 (407)
T 2dkj_A 216 YAHVVTSTTHKTLRGPRG-GLILSNDPELG-KRIDKLIFPGI---------QGGPLEHVIAGKAVAFFEALQPEFKEYSR 284 (407)
T ss_dssp TCSEEEEESSGGGCCCSC-EEEEESCHHHH-HHHHHHHTTTT---------CSSCCHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred cccEEEEeccccCCCCCc-eEEEECCHHHH-HHHHhhhcccc---------cCCCcHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 479999999999876665 88887643332 11111 11111 12333333445666776654567788999
Q ss_pred HHHHHHHHHHHHHhhCCCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCC---CCCCceEEEEEec
Q 011057 346 NCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPA---DAQHITVLRVVIR 422 (494)
Q Consensus 346 ~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~---~~~~~~~lRvs~~ 422 (494)
+..++++++.+.|+++ +++++.++...+++++.+.. .+.+..++.+.|.++|+.+.....+. .......+|++++
T Consensus 285 ~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~ 362 (407)
T 2dkj_A 285 LVVENAKRLAEELARR-GYRIVTGGTDNHLFLVDLRP-KGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTP 362 (407)
T ss_dssp HHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGG-GTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECH
T ss_pred HHHHHHHHHHHHHHhC-CceeecCCCCceEEEEECcc-cCCCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecc
Confidence 9999999999999998 58887543356788888753 23467889999999999986543220 0112357999986
Q ss_pred cC----CChHHHHHHHHHHHHHHHH
Q 011057 423 ED----FSRTLAERLVLDITKVLHE 443 (494)
Q Consensus 423 ~~----~t~~~id~~i~~l~~~~~~ 443 (494)
.. .++++++++++.|+++++.
T Consensus 363 ~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 363 AITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp HHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHHHHHHhc
Confidence 53 6899999999999999877
No 107
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.94 E-value=5.5e-26 Score=227.18 Aligned_cols=325 Identities=14% Similarity=0.063 Sum_probs=218.7
Q ss_pred HHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCC
Q 011057 72 CDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKP 151 (494)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~ 151 (494)
+.+++.+.+.... +...+...+ +++.+++++|.+. +++++||++|+.+++.+++.
T Consensus 21 ~~~~~~~~~~~~~--~~~~~~~~~----l~~~la~~~~~~~-------~~~~~~gt~a~~~~~~~~~~------------ 75 (374)
T 3uwc_A 21 YLNDLREFIKTAD--FTLGAELEK----FEKRFAALHNAPH-------AIGVGTGTDALAMSFKMLNI------------ 75 (374)
T ss_dssp HHHHHHHHHHHTC--CSSCHHHHH----HHHHHHHHTTCSE-------EEEESCHHHHHHHHHHHTTC------------
T ss_pred HHHHHHHHHHcCC--cccChhHHH----HHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHcCC------------
Confidence 7777777766542 334444444 5566899998863 88999999999888776611
Q ss_pred CCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHHHHHh
Q 011057 152 FDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEK 231 (494)
Q Consensus 152 ~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~la~~~ 231 (494)
..+++|+++.++|.++..+++..|++++.+++++ ++.+|+++|++++++++++|+ ++|+||.+.|+++|.++|+++
T Consensus 76 ~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~~~~~~~~v~---~~n~~G~~~~~~~i~~~~~~~ 151 (374)
T 3uwc_A 76 GAGDEVITCANTFIASVGAIVQAGATPVLVDSEN-GYVIDPEKIEAAITDKTKAIM---PVHYTGNIADMPALAKIAKKH 151 (374)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCT-TSSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHT
T ss_pred CCCCEEEECCCccHHHHHHHHHcCCEEEEEecCC-CCCcCHHHHHHhCCCCceEEE---EeCCcCCcCCHHHHHHHHHHc
Confidence 0136899999999999999999999999999984 478999999999988887765 888999999999999999999
Q ss_pred hcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCc--ccCCcCCceEEEEEeCCCCcccccccccCCCCC
Q 011057 232 NKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGH--KYGLVYAGIGWVIWRNKEDLPEELIFHINYLGA 309 (494)
Q Consensus 232 ~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~h--K~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~ 309 (494)
++++++|++|+.+.. +... ... ...|++++++| |++.++...|+++.+++... ..+.....+...
T Consensus 152 ------~~~li~D~~~~~g~~-~~~~----~~~-~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~-~~~~~~~~~~~~ 218 (374)
T 3uwc_A 152 ------NLHIVEDACQTILGR-INDK----FVG-SWGQFACFSLHPLKNLNVWSDAGVIITHSDEYA-EKLRLYRNHGLI 218 (374)
T ss_dssp ------TCEEEEECTTCTTCE-ETTE----ETT-SSSSEEEEECSSSSSSCCSSCCEEEEESCHHHH-HHHHHHTBTTEE
T ss_pred ------CCEEEEeCCCccCce-eCCe----ecc-ccccEEEEeCCCCCcCCccceeEEEEeCCHHHH-HHHHHHHhcCcc
Confidence 999999999987542 1111 111 12588999977 99865344666665553222 111111000000
Q ss_pred CCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCC-eEEeecCCC--ccEEEEEecCCCCC
Q 011057 310 DQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGR-FNIVSKDEG--VPLVAFSLKDNKRH 386 (494)
Q Consensus 310 ~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~-~~~~~~~~~--~~~v~f~~~~~~~~ 386 (494)
........+.. .....+.+++.....++++++.++..++++++.+.|+++++ +++...+.. ..++.|.+...
T Consensus 219 ~~~~~~~~~~~--~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 293 (374)
T 3uwc_A 219 NRDVCVEYGIN--CRMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRVK--- 293 (374)
T ss_dssp ETTEESSCCCB--CBCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEET---
T ss_pred ccCcccccccc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEcC---
Confidence 00000000111 11122333344434456778888899999999999999987 776533221 11222332222
Q ss_pred CHHHHHHHHHhcCceeeccc-cCCCC-------------------CCceEEEEEeccCCChHHHHHHHHHHHHHHHH
Q 011057 387 DEFEVAELLRRFGWIVPAYT-MPADA-------------------QHITVLRVVIREDFSRTLAERLVLDITKVLHE 443 (494)
Q Consensus 387 ~~~~l~~~L~~~Gi~v~~~~-~~~~~-------------------~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~ 443 (494)
+..++.++|.++||.++... .|... .....+|++++..+|++|++++++.|++++++
T Consensus 294 ~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 294 YRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp THHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 57799999999999875543 11000 01268999999999999999999999988764
No 108
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.94 E-value=2.7e-25 Score=224.59 Aligned_cols=332 Identities=12% Similarity=0.074 Sum_probs=227.5
Q ss_pred hHHHHHHHHHHhcccC-CC------CCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHH
Q 011057 69 EPECDKLMMAAINKNY-VD------MDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKW 141 (494)
Q Consensus 69 ~p~~~~~~~~~~~~~~-~~------~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~ 141 (494)
+|.+.+++.+.+.... .. +...+...++++.+++++++++|.+. ..+++++|++|+.+++.++..
T Consensus 36 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~------~~i~~~sGt~a~~~a~~~~~~-- 107 (405)
T 2vi8_A 36 SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEH------ANVQPHSGAQANMAVYFTVLE-- 107 (405)
T ss_dssp CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE------EECCCSSHHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCc------eEEEecCcHHHHHHHHHHhcC--
Confidence 7888898888875321 11 22234567888888999999999874 234445559999988887732
Q ss_pred HHHHHhcCCCCCCCeEEeCCCcchHHHH-H--HHHcC--CeeEEEeccCCccccCHHHHHHhhhh-CCeEEEEeeCCCCc
Q 011057 142 QNKRKAEGKPFDKPNIVTGANVQVCWEK-F--ARYFE--VELKEVKLSEGYYVMDPVKAVEMVDE-NTICVAAILGSTLN 215 (494)
Q Consensus 142 ~~~~~~~g~~~~~~~vi~~~~~h~s~~~-~--~~~~G--~~v~~v~~~~~~~~~d~~~L~~~i~~-~t~~vv~~~~~~~t 215 (494)
.+++|+++.++|.++.. . +...| .+++.++++++++.+|+++|++++++ ++++|++ .+++ .
T Consensus 108 -----------~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~-~~~~-~ 174 (405)
T 2vi8_A 108 -----------HGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVA-AAAA-Y 174 (405)
T ss_dssp -----------TTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSS-C
T ss_pred -----------CCCEEEEecccccchhcccchhhhccceeEEEecccccccCCcCHHHHHHHHHhcCCeEEEE-eCCC-C
Confidence 12689999999976643 1 12334 36667776534478999999999986 7887776 3333 4
Q ss_pred ccccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCC
Q 011057 216 GEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKED 295 (494)
Q Consensus 216 G~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~ 295 (494)
|...++++|.++|+++ |+++++|++|+.+..+. +... .....+|+++.++||++++|.| |++++++ ..
T Consensus 175 ~~~~~l~~i~~l~~~~------~~~li~Dea~~~g~~~~--~~~~--~~~~~~di~~~s~sK~~~g~~g-G~~~~~~-~~ 242 (405)
T 2vi8_A 175 PRIIDFAKFREIADEV------GAYLMVDMAHIAGLVAA--GLHP--NPVPYAHFVTTTTHKTLRGPRG-GMILCQE-QF 242 (405)
T ss_dssp CSCCCHHHHHHHHHHH------TCEEEEECTTTHHHHHT--TSSC--CSTTTCSEEEEESSSTTCCCSC-EEEEECH-HH
T ss_pred CccCCHHHHHHHHHHc------CCEEEEEcccccccccc--CcCC--CccccCCEEEEeccccCCCCCC-eEEEEcH-HH
Confidence 6777899999999999 99999999998543321 1111 1123588999999999987888 8888753 22
Q ss_pred cccccccc-cCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCcc
Q 011057 296 LPEELIFH-INYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVP 374 (494)
Q Consensus 296 ~~~~~~~~-~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~ 374 (494)
. +.+... ..+. .++.+.....++.++++.+..+++++..++..++++++.+.|+++ ++++..++...+
T Consensus 243 ~-~~l~~~~~~~~---------~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~ 311 (405)
T 2vi8_A 243 A-KQIDKAIFPGI---------QGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDNH 311 (405)
T ss_dssp H-HHHHHHHTTTT---------CSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSS
T ss_pred H-HHHHhhhcccc---------cCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeEecCCCCce
Confidence 2 222111 1111 123333445555667766555677889999999999999999998 588876533467
Q ss_pred EEEEEecCCCCCCHHHHHHHHHhcCceeeccccCC---CCCCceEEEEEecc----CCChHHHHHHHHHHHHHHHHHh
Q 011057 375 LVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPA---DAQHITVLRVVIRE----DFSRTLAERLVLDITKVLHELD 445 (494)
Q Consensus 375 ~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~---~~~~~~~lRvs~~~----~~t~~~id~~i~~l~~~~~~l~ 445 (494)
++.+.+.. .+.+..++.+.|.++|+.+.....|. .......+|++++. .+++++++++++.|+++++.++
T Consensus 312 ~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 388 (405)
T 2vi8_A 312 LLLVDLRP-QQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVG 388 (405)
T ss_dssp EEEEECGG-GTCCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTT
T ss_pred EEEEEccC-CCCCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhccc
Confidence 77888753 23467889999999999986543210 01123469999986 4679999999999988876543
No 109
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.94 E-value=7.8e-25 Score=227.24 Aligned_cols=340 Identities=10% Similarity=-0.043 Sum_probs=226.0
Q ss_pred HHHHHHHHHHhccc----CCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHH-HHHHHH
Q 011057 70 PECDKLMMAAINKN----YVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFK-RKWQNK 144 (494)
Q Consensus 70 p~~~~~~~~~~~~~----~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~-~~~~~~ 144 (494)
+.+.+.+.+.+... ...|...++..++++++.+++.+..|.+.+ ...+++|+|+++++.+++.++. .
T Consensus 109 ~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~---~~~i~~t~G~~~al~~~~~~l~~~----- 180 (500)
T 3tcm_A 109 ADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPAN---ADDIFLTDGASPGVHLMMQLLIRN----- 180 (500)
T ss_dssp HHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCC---GGGEEEESSSHHHHHHHHHHHCCS-----
T ss_pred HHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCC---cccEEEcCCHHHHHHHHHHHHcCC-----
Confidence 33444445566552 335666678889999999999988886642 2468999999999998888773 2
Q ss_pred HHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCC-ccccCHHHHHHhhhh------CCeEEEEeeCCCCccc
Q 011057 145 RKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEG-YYVMDPVKAVEMVDE------NTICVAAILGSTLNGE 217 (494)
Q Consensus 145 ~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~~i~~------~t~~vv~~~~~~~tG~ 217 (494)
.+++|+++.+.|..+..+++..|++++.++++++ ++.+|+++|++++++ ++++|++++++||||.
T Consensus 181 --------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~ 252 (500)
T 3tcm_A 181 --------EKDGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQ 252 (500)
T ss_dssp --------TTEEEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCC
T ss_pred --------CCCEEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcc
Confidence 1268999999999999999999999999999853 478999999999987 6889999999999999
Q ss_pred ccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCccc-----cccc--CCCce-EEEEcCcccCC--cCCc
Q 011057 218 FED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELE-----WDFR--LPLVK-SINVSGHKYGL--VYAG 284 (494)
Q Consensus 218 ~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-----~~~~--~~~~D-~~~~~~hK~l~--~p~g 284 (494)
+.+ +++|+++|+++ ++++++|++|+.+...-..+... .+++ ...+. ++..+++|.+. ++.+
T Consensus 253 ~~s~~~l~~i~~la~~~------~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R 326 (500)
T 3tcm_A 253 VLAEENQYDIVKFCKNE------GLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKR 326 (500)
T ss_dssp CCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGC
T ss_pred cCCHHHHHHHHHHHHHc------CCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccc
Confidence 954 67778889999 99999999998754210001000 0111 12233 34458899763 5667
Q ss_pred eEEEEEe--CCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHH---------hcHhHHHHHHHHHHHHHHH
Q 011057 285 IGWVIWR--NKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIR---------LGFEGYRNVMENCHENAMV 353 (494)
Q Consensus 285 ~G~~~~~--~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~---------l~~~g~~~~~~~~~~~a~~ 353 (494)
+|++++. ++..+ +.+....... ...+.....++..++.. .-.....++.+++.+++++
T Consensus 327 ~G~~~~~~~~~~~~-~~l~~~~~~~----------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 395 (500)
T 3tcm_A 327 GGYFEITGFSAPVR-EQIYKIASVN----------LCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKA 395 (500)
T ss_dssp CEEEEEESCCTTHH-HHHHHHHHTT----------CCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCHHHH-HHHHHHHhcc----------cCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 8998874 33222 2211110100 11111222222222210 0112345667788889999
Q ss_pred HHHHHhhCCCeEEeecCCCccEEEE-EecCCC---------CCCHHH--HHHHHHhcCceeeccccCCCCCCceEEEEEe
Q 011057 354 LKEGLEKTGRFNIVSKDEGVPLVAF-SLKDNK---------RHDEFE--VAELLRRFGWIVPAYTMPADAQHITVLRVVI 421 (494)
Q Consensus 354 l~~~L~~~~~~~~~~~~~~~~~v~f-~~~~~~---------~~~~~~--l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~ 421 (494)
+.+.|++++++++..+ ..+++.| .+..+. +..... +.+.|.++||.+.....+....+...+|+++
T Consensus 396 l~~~L~~~~g~~~~~~--~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~ 473 (500)
T 3tcm_A 396 LEHAFNKLEGITCNEA--EGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTI 473 (500)
T ss_dssp HHHHHHTSTTEECCCC--CBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEES
T ss_pred HHHHHhcCCCcEEecC--CeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEE
Confidence 9999999977887654 3455554 332110 112222 3356777899986554443334566799999
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHhc
Q 011057 422 REDFSRTLAERLVLDITKVLHELDS 446 (494)
Q Consensus 422 ~~~~t~~~id~~i~~l~~~~~~l~~ 446 (494)
+ .+.++++.+++.|+++++++.+
T Consensus 474 ~--~~~e~i~~~i~~l~~~~~~~~~ 496 (500)
T 3tcm_A 474 L--PQEDKIPAVISRFTVFHEAFMS 496 (500)
T ss_dssp C--SCTTTHHHHHHHHHHHHHHHHH
T ss_pred C--CCHHHHHHHHHHHHHHHHHHHH
Confidence 8 6888999999999998877643
No 110
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.94 E-value=6.8e-25 Score=219.40 Aligned_cols=318 Identities=12% Similarity=0.044 Sum_probs=219.3
Q ss_pred HHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHh-CCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 011057 75 LMMAAINKNYVDMDEYPVTTELQNRCVNIIARLF-NAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFD 153 (494)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~-g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~ 153 (494)
.+.+.+......|...++..++++. +++++ +.++ ..+++|+||++|+..++.++..+
T Consensus 47 ~~~~~~~~~~~~y~~~~g~~~l~~~----la~~~~~~~~-----~~v~~~~g~~~a~~~~~~~l~~~------------- 104 (375)
T 3op7_A 47 DFYKKLQGTKLNYGWIEGSPAFKKS----VSQLYTGVKP-----EQILQTNGATGANLLVLYSLIEP------------- 104 (375)
T ss_dssp HHHHHHHTSCCSSCCTTCCHHHHHH----HHTTSSSCCG-----GGEEEESHHHHHHHHHHHHHCCT-------------
T ss_pred HHHHHHhcCCcCCCCCCChHHHHHH----HHHHhccCCh-----hhEEEcCChHHHHHHHHHHhcCC-------------
Confidence 4445555555556666667666655 67666 3443 45899999999999888877321
Q ss_pred CCeEEeCCCcchHHHHHHHHcCCeeEEEeccC-CccccCHHHHHHhhhhCCeEEEEeeCCCCcccccC---HHHHHHHHH
Q 011057 154 KPNIVTGANVQVCWEKFARYFEVELKEVKLSE-GYYVMDPVKAVEMVDENTICVAAILGSTLNGEFED---VKLLNDLLA 229 (494)
Q Consensus 154 ~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~---l~~I~~la~ 229 (494)
+++|+++.++|..+...++..|++++.+++++ +++.+|+++|++++++++++|++++++||||.+.| +++|.++|+
T Consensus 105 gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~ 184 (375)
T 3op7_A 105 GDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIAS 184 (375)
T ss_dssp TCEEEEEESSCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHH
Confidence 26899999999999999999999999999873 34679999999999999999999999999999999 999999999
Q ss_pred HhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCC-cCCceEEEEEeCCCCcccccccccCCCC
Q 011057 230 EKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGL-VYAGIGWVIWRNKEDLPEELIFHINYLG 308 (494)
Q Consensus 230 ~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~G~~~~~~~~~~~~~~~~~~~y~~ 308 (494)
++ |+++++|++|+.+... + ........+.+.+..+++|++. ++.++|++++ ++... +.+.....+.
T Consensus 185 ~~------~~~li~De~~~~~~~~---~-~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~-~~~l~-~~~~~~~~~~- 251 (375)
T 3op7_A 185 EV------GAYILSDEVYRSFSEL---D-VPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAA-NHQVT-DILRDYRDYT- 251 (375)
T ss_dssp TT------TCEEEEECCSCCCSSS---C-CCCHHHHCTTEEEEEESSSSSSCGGGCCEEEEC-CHHHH-HHHTTTGGGT-
T ss_pred Hc------CCEEEEEccccccccc---C-CCchhhhcCCEEEEeEChhhcCCcccceEEEEe-CHHHH-HHHHHHHhhh-
Confidence 99 9999999999875431 1 1101112245577788999985 5667799886 33222 2211111110
Q ss_pred CCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccEEEEEecCCCCCCH
Q 011057 309 ADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDE 388 (494)
Q Consensus 309 ~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~ 388 (494)
..+.+.....++..+++. ..+.+++..++..++++++.+.|++.+++++..+. ...++.+.+.. +.+.
T Consensus 252 --------~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~--~~~~ 319 (375)
T 3op7_A 252 --------MICAGVFDDLVAQLALAH-YQEILERNRHILEENLAILDQWIEEEPLVSYIRPA-VVSTSFVKIAV--DMPM 319 (375)
T ss_dssp --------TSCCCHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCS-SSSCEEEEECC--SSCH
T ss_pred --------ccCCCcHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCC-CeEEEeEEcCC--CCCH
Confidence 011122333333334432 23345666777788999999999998878876553 33344445532 4577
Q ss_pred HHHHHHH-HhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHH
Q 011057 389 FEVAELL-RRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHEL 444 (494)
Q Consensus 389 ~~l~~~L-~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l 444 (494)
.+++++| .++|+.+....... ...++|++++. +.++++++++.|+++++++
T Consensus 320 ~~~~~~ll~~~gi~v~~g~~~~---~~~~iRi~~~~--~~~~i~~~l~~l~~~l~~~ 371 (375)
T 3op7_A 320 EDFCLQLLQEHGVLLVPGNRFE---RDGYVRLGFAC--EQETLIKGLEKLSQFLRRF 371 (375)
T ss_dssp HHHHHHHHHHHCEECEEGGGGT---CTTEEEECCCS--CHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCEEEeChhhhC---CCCeEEEEecC--CHHHHHHHHHHHHHHHHHH
Confidence 8888887 58899875443322 14579999874 4478888888888777654
No 111
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.94 E-value=1.1e-24 Score=223.34 Aligned_cols=364 Identities=15% Similarity=0.102 Sum_probs=226.5
Q ss_pred HHHHHHHHhhhhcCCCCCcccccccCCChHHHHHHHHHHhcccCC-CC------CCChhhHHHHHHHHHHHHHHhCCCCC
Q 011057 41 AAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYV-DM------DEYPVTTELQNRCVNIIARLFNAPLE 113 (494)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~------~~~~~~~~le~~~~~~la~l~g~~~~ 113 (494)
++++.+++...... ..+.+.. .+.+.+|.+.+++...+.+.+. ++ ...+...++|+.+++++++++|.+.+
T Consensus 41 ~~~~~~~~e~~rq~-~~i~lia-s~n~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~ 118 (490)
T 2a7v_A 41 EMWELLQREKDRQC-RGLELIA-SENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPA 118 (490)
T ss_dssp HHHHHHHHHHHHHH-HSEECCT-TCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHHHH-cCceEEC-CCCCCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcc
Confidence 35666554443221 1222232 2334578899998877754321 11 12233458888889999999999852
Q ss_pred CCCCc-ceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHH--------HHHHHcCCeeEE--Ee
Q 011057 114 DSETA-VGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWE--------KFARYFEVELKE--VK 182 (494)
Q Consensus 114 ~~~~~-~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~--------~~~~~~G~~v~~--v~ 182 (494)
+ . ..+++++||+||..++.++..+ +++|++++..|.+.. ..+...|..++. ++
T Consensus 119 ~---~~~~v~~~sGt~An~~al~al~~p-------------GD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~ 182 (490)
T 2a7v_A 119 Q---WGVNVQPYSGSPANLAVYTALLQP-------------HDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYK 182 (490)
T ss_dssp T---EEEECCCSSHHHHHHHHHHHHCCS-------------CEECCC-------------------------------CC
T ss_pred c---CceEEeCCchHHHHHHHHHHHcCC-------------CCEecccCccccccccchhhhcchhHHHcCCeEEEEecc
Confidence 1 1 2456778999999888877331 368888888775321 123455655444 44
Q ss_pred ccCCccccCHHHHHHhhhh-CCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccc
Q 011057 183 LSEGYYVMDPVKAVEMVDE-NTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEW 261 (494)
Q Consensus 183 ~~~~~~~~d~~~L~~~i~~-~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~ 261 (494)
++++++.+|+++|++++.+ ++++|++..+++ |...|+++|+++|+++ |+++|+|+||+.+... .+....
T Consensus 183 vd~~~~~iD~d~le~~l~~~~~klIi~~~s~~--~~~~dl~~i~~ia~~~------g~~livD~Ah~~glv~--~g~~~~ 252 (490)
T 2a7v_A 183 LNPKTGLIDYNQLALTARLFRPRLIIAGTSAY--ARLIDYARMREVCDEV------KAHLLADMAHISGLVA--AKVIPS 252 (490)
T ss_dssp BCTTTCSBCHHHHHHHHHHHCCSEEEECCSSC--CSCCCHHHHHHHHHHT------TCEEEEECGGGHHHHH--TTSSCC
T ss_pred cccccCCcCHHHHHHHHhhcCCcEEEEcCCCC--CCcccHHHHHHHHHHc------CCEEEEcccccccccc--CCcCCC
Confidence 5544589999999999864 688777655554 4567899999999999 9999999999754321 111111
Q ss_pred cccCCCceEEEEcCcccCCcCCceEEEEEeCCCC-------------cccccccccCCCCCCCCCcccccCcchHHHHHH
Q 011057 262 DFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKED-------------LPEELIFHINYLGADQPTFTLNFSKGSSQVIAQ 328 (494)
Q Consensus 262 ~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~-------------~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~ 328 (494)
.+ .++|++++++||++.+|.| |++++++... +...+.. .... ...++++...+.++
T Consensus 253 ~~--~~aDiv~~S~hK~l~Gp~G-G~i~~~~~~~~~~~~~~~~~~~~l~~~i~~--~~~~------g~qggp~~~~iaAl 321 (490)
T 2a7v_A 253 PF--KHADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTGREIPYTFEDRINF--AVFP------SLQGGPHNHAIAAV 321 (490)
T ss_dssp GG--GTCSEEEEESSGGGCSCSC-EEEEEECSEEEEETTTEEEEECCCHHHHHH--HHTT------TTCCSCCHHHHHHH
T ss_pred CC--CCCCEEEECCcccCccccc-hheeeccchhcccccccchhhHHHHHHHHH--Hhcc------cCCCCchHHHHHHH
Confidence 22 3689999999999987766 8888776410 1011000 0000 01234444555666
Q ss_pred HHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccC
Q 011057 329 YYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMP 408 (494)
Q Consensus 329 ~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~ 408 (494)
.+++.....+.++++.++..+++++|.+.|.+.+ ++++......+++.+.+.+ .+++..++.+.|.+.||.+.....|
T Consensus 322 a~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~G-~~v~~~~t~t~lv~vdl~~-~g~~~~~~~~~L~~~GI~v~~~~~p 399 (490)
T 2a7v_A 322 AVALKQACTPMFREYSLQVLKNARAMADALLERG-YSLVSGGTDNHLVLVDLRP-KGLDGARAERVLELVSITANKNTCP 399 (490)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEECTT-TTCCHHHHHHHHHHTTEECEEECCT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcC-cEEecCCCCCeEEEEEeCC-CCCCHHHHHHHHHhCCeEEecCccC
Confidence 6666655444567888999999999999999985 9987643345777777753 3567888999999999998654333
Q ss_pred CC--CCCceEEEEEec----cCCChHHHHHHHHHHHHHHHHHh
Q 011057 409 AD--AQHITVLRVVIR----EDFSRTLAERLVLDITKVLHELD 445 (494)
Q Consensus 409 ~~--~~~~~~lRvs~~----~~~t~~~id~~i~~l~~~~~~l~ 445 (494)
.. ......+|+++. ..++++|++++++.|.++++...
T Consensus 400 ~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~~~ 442 (490)
T 2a7v_A 400 GDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGL 442 (490)
T ss_dssp TCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHHhhh
Confidence 32 122356999763 35688999999999998887653
No 112
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.94 E-value=1.9e-25 Score=222.08 Aligned_cols=329 Identities=13% Similarity=0.066 Sum_probs=228.1
Q ss_pred CChHHHHHHHHHHhccc--C--CCCCC---ChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecCh-hHHHHHHHHHHH
Q 011057 67 WMEPECDKLMMAAINKN--Y--VDMDE---YPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGS-SEAIMLAGLAFK 138 (494)
Q Consensus 67 ~~~p~~~~~~~~~~~~~--~--~~~~~---~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~gg-t~a~~~a~~a~~ 138 (494)
++++.+.+++.+++... . ..+.. +++..++.+++++++++++|.+. ...+++|+|+ ++|+.+++.++.
T Consensus 13 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~----~~~v~~~~g~gt~al~~~~~~l~ 88 (360)
T 1w23_A 13 ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPN----DYQILFLQGGASLQFTMLPMNLL 88 (360)
T ss_dssp CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCT----TEEEEEESSHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCC----CceEEEECCcchHHHHHHHHHhc
Confidence 55678888888887542 1 11112 56777788899999999999962 1358899998 999998877763
Q ss_pred HHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHH-hhhhCCeEEEEeeCCCCccc
Q 011057 139 RKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVE-MVDENTICVAAILGSTLNGE 217 (494)
Q Consensus 139 ~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~-~i~~~t~~vv~~~~~~~tG~ 217 (494)
.+ | ...++|+++..+|.+.. .++..| +++.++++++++.+|+++|++ +++++|++|++++++|+||.
T Consensus 89 ~~--------~--~~g~~vi~~~~~~~~~~-~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~~~~k~v~~~~~~nptG~ 156 (360)
T 1w23_A 89 TK--------G--TIGNYVLTGSWSEKALK-EAKLLG-ETHIAASTKANSYQSIPDFSEFQLNENDAYLHITSNNTIYGT 156 (360)
T ss_dssp CT--------T--CEEEEEECSHHHHHHHH-HHHTTS-EEEEEEECGGGTSCSCCCGGGCCCCTTEEEEEEESEETTTTE
T ss_pred CC--------C--CcccEEEecchhHHHHH-HHHHhC-CeEEeecccccCcCCccchHhhccCCCCCEEEEeCCCCCcce
Confidence 21 1 01236778888887644 457789 999999975335689999999 88888999999999999999
Q ss_pred ccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCcc
Q 011057 218 FEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLP 297 (494)
Q Consensus 218 ~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~ 297 (494)
+.| +| ++++ |+++++|++|+.+..++ ++. ..|+++.++||++. |.|+|+++++++. +
T Consensus 157 ~~~--~i---~~~~------~~~li~D~a~~~~~~~~-------~~~--~~di~~~s~sK~~~-~~G~G~~~~~~~~-~- 213 (360)
T 1w23_A 157 QYQ--NF---PEIN------HAPLIADMSSDILSRPL-------KVN--QFGMIYAGAQKNLG-PSGVTVVIVKKDL-L- 213 (360)
T ss_dssp ECS--SC---CCCC------SSCEEEECTTTTTSSCC-------CGG--GCSEEEEETTTTTS-CTTCEEEEEEHHH-H-
T ss_pred ecc--cc---cccC------CceEEEechhhcCCCCc-------Ccc--cCCEEEEEcccccC-CCCcEEEEEcHHH-H-
Confidence 965 33 3367 99999999998764322 111 23899999999875 7789999987532 2
Q ss_pred cccccccCCCCCCC----CCcccccCcchHHHHHHHHHHHHhcHh-HHHHHHHHHHHHHHHHHHHHhhCCCe-EEee-cC
Q 011057 298 EELIFHINYLGADQ----PTFTLNFSKGSSQVIAQYYQLIRLGFE-GYRNVMENCHENAMVLKEGLEKTGRF-NIVS-KD 370 (494)
Q Consensus 298 ~~~~~~~~y~~~~~----~~~~~~~s~~~~~~~a~~~al~~l~~~-g~~~~~~~~~~~a~~l~~~L~~~~~~-~~~~-~~ 370 (494)
..+.....+..... .. ...++.+....+++.++++.+... +++++.++..++++++.+.|++++++ .... +.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 292 (360)
T 1w23_A 214 NTKVEQVPTMLQYATHIKSD-SLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKG 292 (360)
T ss_dssp CSCCTTCCGGGCHHHHHHTT-TCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGG
T ss_pred hhcccCCcchhhhhhhhhcc-CCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCch
Confidence 11111101100000 00 011344455556677777776665 78889999999999999999998765 5432 21
Q ss_pred CCcc-EEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHH
Q 011057 371 EGVP-LVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLH 442 (494)
Q Consensus 371 ~~~~-~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~ 442 (494)
...+ ++.|.+++ ..+..++.++|.++|+.+..... ...++|++++..++.++++++++.|+++++
T Consensus 293 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~~~~~~~-----~~~~iRis~~~~~~~~~i~~~~~~l~~~~~ 358 (360)
T 1w23_A 293 SRSLMNVTFNLRN--EELNQQFLAKAKEQGFVGLNGHR-----SVGGCRASIYNAVPIDACIALRELMIQFKE 358 (360)
T ss_dssp GBCSSEEEEECSS--HHHHHHHHHHHHHTTEESCBCCT-----TTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred hccCcEEEEEcCC--CccHHHHHHHHHHCCeeeecCCC-----CCCeEEEEecCCCCHHHHHHHHHHHHHHHh
Confidence 1234 78888743 22456788999999998633211 134699999988899999999999988765
No 113
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.94 E-value=4.9e-25 Score=222.41 Aligned_cols=327 Identities=14% Similarity=0.030 Sum_probs=225.2
Q ss_pred CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceee-ecChhHHHHHHHHHHHHHHHHHH
Q 011057 67 WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVG-TVGSSEAIMLAGLAFKRKWQNKR 145 (494)
Q Consensus 67 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~-t~ggt~a~~~a~~a~~~~~~~~~ 145 (494)
++++.+.+++.++.+........++...++.+++++++++++|.+.. ..+++ |+||++|+.+++.++..
T Consensus 50 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~----~~i~~~t~g~t~al~~~~~~l~~------ 119 (398)
T 2fyf_A 50 KVRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDG----YEVILGNGGATAFWDAAAFGLID------ 119 (398)
T ss_dssp CCCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTT----CEEEEEETCHHHHHHHHHHHTCS------
T ss_pred CCCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCC----ceEEEeCCchhHHHHHHHHHhcC------
Confidence 45677777765531111111134566677788999999999999731 24777 99999999988887622
Q ss_pred HhcCCCCCCCeEEeCCCcchH-HHHHHHHc--CCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHH
Q 011057 146 KAEGKPFDKPNIVTGANVQVC-WEKFARYF--EVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVK 222 (494)
Q Consensus 146 ~~~g~~~~~~~vi~~~~~h~s-~~~~~~~~--G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~ 222 (494)
+..++++...|.. +...+... |++++.++++++ ...+. .++++|++|++++++|+||.+.|++
T Consensus 120 --------~gv~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~g-~~~~~-----~i~~~~~~v~~~~~~nptG~~~~~~ 185 (398)
T 2fyf_A 120 --------KRSLHLTYGEFSAKFASAVSKNPFVGEPIIITSDPG-SAPEP-----QTDPSVDVIAWAHNETSTGVAVAVR 185 (398)
T ss_dssp --------SCEEEEECSHHHHHHHHHHHHCTTSCCCEEEECCTT-CCCCC-----CCCTTCSEEEEESEETTTTEECCCC
T ss_pred --------CCeEEEeCCHHHHHHHHHHHHhCCCCceEEEecCCC-CCCCc-----cccCCCCEEEEeCcCCCcceecchH
Confidence 1224445555532 23345666 888999998742 33332 2567889999999999999999999
Q ss_pred HHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCccccccc
Q 011057 223 LLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIF 302 (494)
Q Consensus 223 ~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~ 302 (494)
+|.++ + ++++++|+||+.+..++ ++ ..+|++++++||+++++.|+|+++++++ .+ ..+..
T Consensus 186 ~i~~~---~------~~~vivD~a~~~~~~~~-------~~--~~~di~~~s~sK~~~~~gg~g~l~~~~~-~~-~~l~~ 245 (398)
T 2fyf_A 186 RPEGS---D------DALVVIDATSGAGGLPV-------DI--AETDAYYFAPQKNFASDGGLWLAIMSPA-AL-SRIEA 245 (398)
T ss_dssp CCTTC---C-------CEEEEECTTTTTTSCC-------CG--GGCSEEEECTTSTTCSCSSEEEEEECHH-HH-HHHHH
T ss_pred Hhhhh---c------CCeEEEEeccccCCccc-------Cc--ccCcEEEEecCcccCCCCceEEEEECHH-HH-HHhhc
Confidence 99887 7 99999999998764322 12 1479999999999987767999887653 22 11100
Q ss_pred -------ccCCCCCCC------CCcccccCcchHHHHHHHHHHHHhcHhH-HHHHHHHHHHHHHHHHHHHhhCCCeEEee
Q 011057 303 -------HINYLGADQ------PTFTLNFSKGSSQVIAQYYQLIRLGFEG-YRNVMENCHENAMVLKEGLEKTGRFNIVS 368 (494)
Q Consensus 303 -------~~~y~~~~~------~~~~~~~s~~~~~~~a~~~al~~l~~~g-~~~~~~~~~~~a~~l~~~L~~~~~~~~~~ 368 (494)
...|..... ... ..++.+....+++.++++.+...| ++++.++..++++++.+.|++++++++..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~ 324 (398)
T 2fyf_A 246 IAATGRWVPDFLSLPIAVENSLKNQ-TYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFV 324 (398)
T ss_dssp HHHTTCCCCGGGCHHHHHHHHTTTC-CSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESC
T ss_pred ccccCCCCCcEEehHHHhhhcccCC-CCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCceecc
Confidence 011221100 000 113444455667777887776666 88899999999999999999997798874
Q ss_pred --cCCCcc-EEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHH
Q 011057 369 --KDEGVP-LVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHE 443 (494)
Q Consensus 369 --~~~~~~-~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~ 443 (494)
+....+ +++|.++. +.+..++.++|.++|+.++... . ..+..++|++++..++.++++++++.|++++++
T Consensus 325 ~~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~gI~v~~g~-~--~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 325 TDPGLRSQVVGTIDFVD--DVDAGTVAKILRANGIVDTEPY-R--KLGRNQLRVAMFPAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp CSGGGBCSSEEEEEECT--TSCHHHHHHHHHHTTCBCCSCC-T--TTCSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred CChhhcCCcEEEEECCC--CCCHHHHHHHHHHCCcEEecCc-c--cCCCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 211345 88888843 4678899999999999875321 1 123468999999889999999999999887653
No 114
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.94 E-value=1.1e-24 Score=217.84 Aligned_cols=338 Identities=12% Similarity=0.010 Sum_probs=232.1
Q ss_pred cCCCCCcccccccCC-ChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHH
Q 011057 53 DGNPRLNLASFVTTW-MEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIM 131 (494)
Q Consensus 53 ~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~ 131 (494)
++ ..++|..+.+.. .+|.+.+++.+.+. ....|....+..++++++.+++++.+|.+.+ ...+++|+|+++++.
T Consensus 22 ~g-~~i~l~~~~~~~~~~~~v~~a~~~~~~-~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~---~~~i~~t~g~~~al~ 96 (376)
T 3ezs_A 22 KK-RGLDLGIGEPQFETPKFIQDALKNHTH-SLNIYPKSAFEESLRAAQRGFFKRRFKIELK---ENELISTLGSREVLF 96 (376)
T ss_dssp SS-CCCBCSSCCCCSCCCHHHHHHHHTTGG-GGGSCCCTTCCHHHHHHHHHHHHHHHSCCCC---GGGEEEESSSHHHHH
T ss_pred cC-CEEEeCCCCCCCCCCHHHHHHHHHhhh-hcCCCCCCCCCHHHHHHHHHHHHHHhCCCCC---HHHEEECcCcHHHHH
Confidence 44 556666665443 45778888887763 2334444456788999999999999998431 246999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeC
Q 011057 132 LAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILG 211 (494)
Q Consensus 132 ~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~ 211 (494)
+++.++..+ ..+++|+++.++|..+...++..|++++.++++++ ..+++ +|++++.+++++|+++++
T Consensus 97 ~~~~~~~~~-----------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~-~l~~~~~~~~~~v~~~~p 163 (376)
T 3ezs_A 97 NFPSFVLFD-----------YQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKE-NDFTP-SLNEKELQEVDLVILNSP 163 (376)
T ss_dssp HHHHHHTTT-----------CSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGG-GTSCC-CCCHHHHHHCSEEEECSS
T ss_pred HHHHHHcCC-----------CCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCC-CCcch-hHHhhhccCCCEEEEcCC
Confidence 888877321 00268999999999999999999999999998764 23454 677777778999999999
Q ss_pred CCCcccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCccc-ccc-c-----CCCceEEEEcCcccC-C
Q 011057 212 STLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELE-WDF-R-----LPLVKSINVSGHKYG-L 280 (494)
Q Consensus 212 ~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~-~-----~~~~D~~~~~~hK~l-~ 280 (494)
+||||.+.| +++|.++|+++ |+++++|++|+.+.. ...... ... . ..+.+++..+++|++ +
T Consensus 164 ~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~ 235 (376)
T 3ezs_A 164 NNPTGRTLSLEELISWVKLALKH------DFILINDECYSEIYE--NTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSA 235 (376)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBS--SSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTC
T ss_pred CCCcCCCCCHHHHHHHHHHHHHc------CcEEEEEccchhhcc--CCCCCCHHHccccccccccCcEEEEecchhccCC
Confidence 999999966 66788889999 999999999987643 111100 000 0 245778888999998 4
Q ss_pred cCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhh
Q 011057 281 VYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 360 (494)
Q Consensus 281 ~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~ 360 (494)
++.++|+++.+. ... +.+.....+. .++.+.....++.++++. .+.+++..++..++++++.+.|+
T Consensus 236 ~G~r~G~~~~~~-~~~-~~~~~~~~~~---------~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~- 301 (376)
T 3ezs_A 236 PGLRSGFIAGDS-RLL-EKYKAFRAYL---------GYTSANAIQKASEAAWLD--DRHAEFFRNIYANNLKLARKIFK- 301 (376)
T ss_dssp GGGCCEEEEECH-HHH-HHHHHHHTTT---------CCCCCHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHST-
T ss_pred ccceeEEEeeCH-HHH-HHHHHHHhhh---------cCCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHhc-
Confidence 677889987633 222 2211111110 012222333333444432 33467788888889999999987
Q ss_pred CCCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHh-cCceeeccccCCC-CCCceEEEEEeccCCChHHHHHHHHHHH
Q 011057 361 TGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRR-FGWIVPAYTMPAD-AQHITVLRVVIREDFSRTLAERLVLDIT 438 (494)
Q Consensus 361 ~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~-~Gi~v~~~~~~~~-~~~~~~lRvs~~~~~t~~~id~~i~~l~ 438 (494)
++. .+....++.+.+. +..++.++|.+ +|+.+........ ..+..++|++++. ++++++++++.|+
T Consensus 302 --~~~---~~~~~~~~~~~~~-----~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~ 369 (376)
T 3ezs_A 302 --NTL---IYPYSFYVYLPVQ-----NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVY--DTPLLEKPLEIIE 369 (376)
T ss_dssp --TCC---CCSBSSEEEEECS-----CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCS--CHHHHHHHHHHHH
T ss_pred --CCC---CCCcceEEEEECC-----CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcC--CHHHHHHHHHHHH
Confidence 354 2224456666663 57789999988 8999864433221 2345689999874 8899999988888
Q ss_pred HHHH
Q 011057 439 KVLH 442 (494)
Q Consensus 439 ~~~~ 442 (494)
++++
T Consensus 370 ~~l~ 373 (376)
T 3ezs_A 370 TYRE 373 (376)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8764
No 115
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.94 E-value=1.1e-24 Score=222.36 Aligned_cols=356 Identities=10% Similarity=-0.000 Sum_probs=233.2
Q ss_pred cCCCC--CcccccccCCChHHHHHHHHHHhcccC------------CCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCc
Q 011057 53 DGNPR--LNLASFVTTWMEPECDKLMMAAINKNY------------VDMDEYPVTTELQNRCVNIIARLFNAPLEDSETA 118 (494)
Q Consensus 53 ~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~------------~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~ 118 (494)
+++|+ ++++........+.+.+++.+...... ..|....+..++++++.+++.+..|..... +..
T Consensus 34 ~~~p~~~i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~-~~~ 112 (435)
T 3piu_A 34 VHNTNGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTF-DPN 112 (435)
T ss_dssp TTBTTSBEECSSCCCCSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCC-CGG
T ss_pred ccCCCCeEEeccccccccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCC-CHH
Confidence 44554 344443333445667777765443221 124444566788888777777665521100 124
Q ss_pred ceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHH-HcCCeeEEEeccCC-ccccCHHHHH
Q 011057 119 VGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFAR-YFEVELKEVKLSEG-YYVMDPVKAV 196 (494)
Q Consensus 119 ~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~-~~G~~v~~v~~~~~-~~~~d~~~L~ 196 (494)
.+++|+||++|+..++.++..+ ++.|+++.+.|.++...+. ..|++++.++++++ ++.+|+++|+
T Consensus 113 ~v~~~~gg~~a~~~~~~~l~~~-------------gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~ 179 (435)
T 3piu_A 113 HLVLTAGATSANETFIFCLADP-------------GEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALE 179 (435)
T ss_dssp GEEEEEHHHHHHHHHHHHHCCT-------------TCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHH
T ss_pred HEEEcCChHHHHHHHHHHhcCC-------------CCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHH
Confidence 6999999999999888877331 2689999999999888877 78999999998753 3679999999
Q ss_pred Hhhhh------CCeEEEEeeCCCCcccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCccc--ccc-c
Q 011057 197 EMVDE------NTICVAAILGSTLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELE--WDF-R 264 (494)
Q Consensus 197 ~~i~~------~t~~vv~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~-~ 264 (494)
+++++ ++++|++++++||||.+.+ +++|+++|+++ ++++++|++|+++.. ...... ..+ .
T Consensus 180 ~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~Dea~~~~~~--~~~~~~~~~~~~~ 251 (435)
T 3piu_A 180 EAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDK------GIHLISDEIYSGTAF--SSPSFISVMEVLK 251 (435)
T ss_dssp HHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTGGGCC--SSSCCCCHHHHHH
T ss_pred HHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHc------CCEEEEecccccccc--CCCCCcCHHHhcc
Confidence 99986 7889999999999999955 58888999999 999999999987532 111100 001 0
Q ss_pred C---------CCceEEEEcCcccCC-cCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHH
Q 011057 265 L---------PLVKSINVSGHKYGL-VYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIR 334 (494)
Q Consensus 265 ~---------~~~D~~~~~~hK~l~-~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~ 334 (494)
. ...+++..+++|+++ ++.++|++++.++... ..+.....+. +.+.....++.+.+..
T Consensus 252 ~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~-~~~~~~~~~~-----------~~~~~~~~~~~~~l~~ 319 (435)
T 3piu_A 252 DRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVV-AAATKMSSFG-----------LVSSQTQHLLSAMLSD 319 (435)
T ss_dssp C-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHH-HHHHHHGGGS-----------CCCHHHHHHHHHHHHC
T ss_pred ccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHH-HHHHHHhhcC-----------CCCHHHHHHHHHHhcC
Confidence 1 123377889999885 6678899987554222 2111111111 1111222222223321
Q ss_pred hc--HhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccEEEEEecCCCCC----CHHHHHHHHHhc-Cceeecccc
Q 011057 335 LG--FEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRH----DEFEVAELLRRF-GWIVPAYTM 407 (494)
Q Consensus 335 l~--~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~----~~~~l~~~L~~~-Gi~v~~~~~ 407 (494)
.. .+.+++..+++.++++++.+.|++.+ +++..+. ...++.+.+...... +..++.++|.++ |+.+.....
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~-~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~ 397 (435)
T 3piu_A 320 KKLTKNYIAENHKRLKQRQKKLVSGLQKSG-ISCLNGN-AGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSS 397 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CEECCCC-SSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccCCC-eeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcc
Confidence 11 23446677788889999999999985 8876543 345777776431100 345788888877 998854332
Q ss_pred CCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHHhc
Q 011057 408 PADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDS 446 (494)
Q Consensus 408 ~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~~ 446 (494)
.. ..+..++|+++... ++++++++++.|+++++++.+
T Consensus 398 ~~-~~~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~~~~ 434 (435)
T 3piu_A 398 CH-CTEPGWFRVCFANL-PERTLDLAMQRLKAFVGEYYN 434 (435)
T ss_dssp GT-CSSTTEEEEECSSS-CHHHHHHHHHHHHHHHHHHC-
T ss_pred cC-CCCCCEEEEEeeCC-CHHHHHHHHHHHHHHHHHHhC
Confidence 21 13456899999644 899999999999999887653
No 116
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.94 E-value=3.4e-25 Score=223.62 Aligned_cols=340 Identities=15% Similarity=0.054 Sum_probs=221.2
Q ss_pred CCCcccccccCCChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHH
Q 011057 56 PRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGL 135 (494)
Q Consensus 56 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~ 135 (494)
+++++..+.+.. .+.+.+++.+.+... .+...+.. .++++.+++++|.+. .+++++|++|+..++.
T Consensus 31 ~~id~~~~~~~~-~~~v~~a~~~~~~~~--~y~~~~~~----~~l~~~la~~~~~~~-------~v~~~~Gt~a~~~~l~ 96 (399)
T 2oga_A 31 PFLDLKAAYEEL-RAETDAAIARVLDSG--RYLLGPEL----EGFEAEFAAYCETDH-------AVGVNSGMDALQLALR 96 (399)
T ss_dssp CSCCHHHHHHHT-HHHHHHHHHHHHHHT--CCSSSHHH----HHHHHHHHHHTTSSE-------EEEESCHHHHHHHHHH
T ss_pred cccccCcCCCCC-CHHHHHHHHHHHhcC--CCCCchhH----HHHHHHHHHHHCCCe-------EEEecCHHHHHHHHHH
Confidence 334444433322 377888888777653 23233333 345667999998863 7888999999998877
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCc
Q 011057 136 AFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLN 215 (494)
Q Consensus 136 a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~t 215 (494)
+++. ..+++|+++.++|.++..+++..|++++.++++++++.+|+++|++++++++++|+ ++++|
T Consensus 97 ~~~~------------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~t 161 (399)
T 2oga_A 97 GLGI------------GPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALL---PVHLY 161 (399)
T ss_dssp HTTC------------CTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCSSSSSBCHHHHHHHCCTTEEEEC---CBCGG
T ss_pred HhCC------------CCcCEEEECCCccHHHHHHHHHCCCEEEEEecCCCCCCcCHHHHHHhcCCCCeEEE---EeCCc
Confidence 7611 01258999999999999999999999999999864578999999999988877665 56889
Q ss_pred ccccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCc--ccCCcCCceEEEEEeCC
Q 011057 216 GEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGH--KYGLVYAGIGWVIWRNK 293 (494)
Q Consensus 216 G~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~h--K~l~~p~g~G~~~~~~~ 293 (494)
|.+.|+++|.++|+++ ++++++|++|+.+.. + .. . .+. ...|++++++| |++.++..+|+++++++
T Consensus 162 G~~~~l~~i~~l~~~~------~~~li~Dea~~~g~~-~-~~--~-~~~-~~~di~~~S~~~sK~~~~~G~~g~~~~~~~ 229 (399)
T 2oga_A 162 GHPADMDALRELADRH------GLHIVEDAAQAHGAR-Y-RG--R-RIG-AGSSVAAFSFYPGKNLGCFGDGGAVVTGDP 229 (399)
T ss_dssp GCCCCHHHHHHHHHHH------TCEECEECTTCTTCE-E-TT--E-ETT-CTTCEEEEECCTTSSSCCSSCCEEEEESCH
T ss_pred CCccCHHHHHHHHHHc------CCEEEEECcccccCc-c-CC--e-ecc-cccCEEEEeCCCCccCCcCCceEEEEeCCH
Confidence 9999999999999999 999999999987642 1 11 1 111 12588888885 99865335677776544
Q ss_pred CCcccccccc-cCCCCC-CCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCC
Q 011057 294 EDLPEELIFH-INYLGA-DQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDE 371 (494)
Q Consensus 294 ~~~~~~~~~~-~~y~~~-~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~ 371 (494)
.......... ..+... .........+. ..+.+++++..+ +.+++..++..++++++.+.|++++++++...+.
T Consensus 230 ~~~~~l~~~~~~g~~~~~~~~~~g~~~~~---~~~~~a~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 304 (399)
T 2oga_A 230 ELAERLRMLRNYGSRQKYSHETKGTNSRL---DEMQAAVLRIRL--AHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAP 304 (399)
T ss_dssp HHHHHHHHHHBTTCSSTTCCCSCCCBCCC---CHHHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCT
T ss_pred HHHHHHHHHHhcCccccccccccccCCCc---CHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCC
Confidence 3321111111 000000 00000111111 222233333222 2234566777788999999999987777653332
Q ss_pred Ccc-E-EEEEecCCCCCCHHHHHHHHHhcCceeecccc-CCC--------------CC-----CceEEEEEeccCCChHH
Q 011057 372 GVP-L-VAFSLKDNKRHDEFEVAELLRRFGWIVPAYTM-PAD--------------AQ-----HITVLRVVIREDFSRTL 429 (494)
Q Consensus 372 ~~~-~-v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~-~~~--------------~~-----~~~~lRvs~~~~~t~~~ 429 (494)
..+ + +.|.+.. .+..++.+.|.++||.++.... +.. .. ...++|++++..+|++|
T Consensus 305 ~~~~~~~~~~~~~---~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~ed 381 (399)
T 2oga_A 305 DTDPVWHLFTVRT---ERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQ 381 (399)
T ss_dssp TEECCCSSEEEEC---SSHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHH
T ss_pred CCcceeEEEEEEC---CCHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHH
Confidence 222 2 2244432 2578899999999998864221 100 00 12689999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 011057 430 AERLVLDITKVLHEL 444 (494)
Q Consensus 430 id~~i~~l~~~~~~l 444 (494)
++++++.|+++++++
T Consensus 382 i~~~~~~l~~~~~~l 396 (399)
T 2oga_A 382 ALRVIDAVREWAERV 396 (399)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887654
No 117
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.94 E-value=1.5e-24 Score=220.80 Aligned_cols=348 Identities=15% Similarity=0.058 Sum_probs=229.9
Q ss_pred ccccccCCC-hHHHHHHHHHHhcccCCCCCC-ChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHH
Q 011057 60 LASFVTTWM-EPECDKLMMAAINKNYVDMDE-YPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAF 137 (494)
Q Consensus 60 ~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~-~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~ 137 (494)
|..+.+... ++.+.+++.++++.+. |.. .++..+ +++.+++++|.+. +++|+||++|+.+++.++
T Consensus 21 l~~~~p~~~~p~~~~~a~~~~~~~~~--y~~~~~~~~~----l~~~la~~~~~~~-------v~~~~ggt~al~~~l~~l 87 (424)
T 2po3_A 21 LLVGRPNRIDRARLYERLDRALDSQW--LSNGGPLVRE----FEERVAGLAGVRH-------AVATCNATAGLQLLAHAA 87 (424)
T ss_dssp EETTCCCCCCHHHHHHHHHHHHHHTC--CSSSCHHHHH----HHHHHHHHHTSSE-------EEEESCHHHHHHHHHHHH
T ss_pred ccccCCCCCChHHHHHHHHHHHhcCC--cccCCHHHHH----HHHHHHHHhCCCe-------EEEeCCHHHHHHHHHHHc
Confidence 344444433 4568888888876532 333 344444 5566888888753 899999999999888877
Q ss_pred HHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCccc
Q 011057 138 KRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGE 217 (494)
Q Consensus 138 ~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~ 217 (494)
.. +++|+++.++|.++..+++..|++++.++++++++.+|+++|++++++++++|++++ ++|.
T Consensus 88 ~~--------------gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~tG~ 150 (424)
T 2po3_A 88 GL--------------TGEVIMPSMTFAATPHALRWIGLTPVFADIDPDTGNLDPDQVAAAVTPRTSAVVGVH---LWGR 150 (424)
T ss_dssp TC--------------CSEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTSSBCHHHHGGGCCTTEEEEEEEC---GGGC
T ss_pred CC--------------CCEEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhhCcCCcEEEEEC---CCCC
Confidence 21 268999999999999999999999999999864578999999999988888887753 7999
Q ss_pred ccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCc--ccCCcCCceEEEEEeCCCC
Q 011057 218 FEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGH--KYGLVYAGIGWVIWRNKED 295 (494)
Q Consensus 218 ~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~h--K~l~~p~g~G~~~~~~~~~ 295 (494)
..++++|.++|+++ ++++++|++|+.+.. +... .+. ...|+++.+++ |++.+ .++|+++.+++..
T Consensus 151 ~~~l~~i~~la~~~------~~~li~Dea~~~g~~-~~~~----~~~-~~~di~~~S~sk~K~l~~-~~~G~~v~~~~~l 217 (424)
T 2po3_A 151 PCAADQLRKVADEH------GLRLYFDAAHALGCA-VDGR----PAG-SLGDAEVFSFHATKAVNA-FEGGAVVTDDADL 217 (424)
T ss_dssp CCCHHHHHHHHHHT------TCEEEEECTTCTTCE-ETTE----ETT-SSSSEEEEECCTTSSSCC-SSCEEEEESCHHH
T ss_pred cCCHHHHHHHHHHc------CCEEEEECccccCCe-ECCe----ecc-cccCEEEEeCCCCCCccC-CCCeEEEeCCHHH
Confidence 99999999999999 999999999985332 1111 111 11356666665 88755 6778887754333
Q ss_pred cccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCC--C-
Q 011057 296 LPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDE--G- 372 (494)
Q Consensus 296 ~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~--~- 372 (494)
+. .+.....+...........+.......++...++. ..++++++.++..++++++.+.|++++++++..++. .
T Consensus 218 ~~-~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~ 294 (424)
T 2po3_A 218 AA-RIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLT--SLDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLN 294 (424)
T ss_dssp HH-HHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCC
T ss_pred HH-HHHHHHhcCccccccccccCcCCCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcc
Confidence 21 11111011000000000001110111222333332 234567788888899999999999987788876321 1
Q ss_pred -ccEEEEEecCC-CCCCHHHHHHHHHhcCceeeccccCCCC-------------CC-----ceEEEEEeccCCChHHHHH
Q 011057 373 -VPLVAFSLKDN-KRHDEFEVAELLRRFGWIVPAYTMPADA-------------QH-----ITVLRVVIREDFSRTLAER 432 (494)
Q Consensus 373 -~~~v~f~~~~~-~~~~~~~l~~~L~~~Gi~v~~~~~~~~~-------------~~-----~~~lRvs~~~~~t~~~id~ 432 (494)
..++.+.++.. .+.+..++.+.|.++||.+.....+... .+ ...+|++++..++.+|+++
T Consensus 295 ~~~~~~i~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~ 374 (424)
T 2po3_A 295 NHQYVIVEIDEATTGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRR 374 (424)
T ss_dssp CCCCEEEEECHHHHSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHH
T ss_pred ccEEEEEEECCccchhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHH
Confidence 24555666310 0356789999999999998653221100 00 1237888778999999999
Q ss_pred HHHHHHHHHHHHhcCcccccc
Q 011057 433 LVLDITKVLHELDSLPSKVLV 453 (494)
Q Consensus 433 ~i~~l~~~~~~l~~~~~~~~~ 453 (494)
+++.|+++++...+..+.+.+
T Consensus 375 ~~~~L~~~~~~~~~~~~~~~~ 395 (424)
T 2po3_A 375 VADLLRLCATRGRELTARHRD 395 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhHHHhhhhcc
Confidence 999999999888776555533
No 118
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.94 E-value=1.6e-24 Score=215.55 Aligned_cols=320 Identities=13% Similarity=0.051 Sum_probs=222.8
Q ss_pred CcccccccC-CChHHHHHHHHHHhccc---CCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHH
Q 011057 58 LNLASFVTT-WMEPECDKLMMAAINKN---YVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLA 133 (494)
Q Consensus 58 ~~~~~~~~~-~~~p~~~~~~~~~~~~~---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a 133 (494)
++|....++ +++|.+.+++.+.+... ...|.. +... ++++++++++|.++ ..+++|+|+++|+.++
T Consensus 29 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~-~~~~----~lr~~la~~~g~~~-----~~i~~t~g~~~al~~~ 98 (360)
T 3hdo_A 29 IKLNTNENPYPPSPEVVKAILEELGPDGAALRIYPS-ASSQ----KLREVAGELYGFDP-----SWIIMANGSDEVLNNL 98 (360)
T ss_dssp EECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCCC-SSCH----HHHHHHHHHHTCCG-----GGEEEESSHHHHHHHH
T ss_pred eeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCCC-CchH----HHHHHHHHHhCcCc-----ceEEEcCCHHHHHHHH
Confidence 344444333 34678999998888764 232321 2333 46667888999754 4599999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCC
Q 011057 134 GLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGST 213 (494)
Q Consensus 134 ~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~ 213 (494)
+.++..+ +++|+++.++|..+...++..|++++.++++++ +.+ +++++.+ ++++|++++++|
T Consensus 99 ~~~l~~~-------------gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~--~~l~~~~--~~~~v~i~~p~n 160 (360)
T 3hdo_A 99 IRAFAAE-------------GEEIGYVHPSYSYYGTLAEVQGARVRTFGLTGD-FRI--AGFPERY--EGKVFFLTTPNA 160 (360)
T ss_dssp HHHHCCT-------------TCEEEEESSSCTHHHHHHHHHTCEEEEECBCTT-SSB--TTCCSSB--CSSEEEEESSCT
T ss_pred HHHHhCC-------------CCEEEEcCCChHHHHHHHHHCCCEEEEeeCCCC-CCH--HHHHhhc--CCCEEEEeCCCC
Confidence 8877321 268999999999999999999999999999764 555 5554443 356899999999
Q ss_pred CcccccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCC-cCCceEEEEEeC
Q 011057 214 LNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGL-VYAGIGWVIWRN 292 (494)
Q Consensus 214 ~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~G~~~~~~ 292 (494)
|||.+.|+++|.++|+++ ++++++|++|+.+.. .+... .......+.+..+++|++. ++.++|+++.+.
T Consensus 161 ptG~~~~~~~l~~l~~~~------~~~li~De~~~~~~~---~~~~~-~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~ 230 (360)
T 3hdo_A 161 PLGPSFPLEYIDELARRC------AGMLVLDETYAEFAE---SNALE-LVRRHENVVVTRTLSKSYSLAGMRIGLAIARP 230 (360)
T ss_dssp TTCCCCCHHHHHHHHHHB------SSEEEEECTTGGGSS---CCCTH-HHHHCSSEEEEEESTTTTSCTTSCCEEEECCH
T ss_pred CCCCCcCHHHHHHHHHHC------CCEEEEECChHhhCC---cchhH-HhccCCCEEEEecchHhhcCCccceeeEeeCH
Confidence 999999999999999999 999999999987421 11111 1112245577789999974 667889988632
Q ss_pred CCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCC
Q 011057 293 KEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEG 372 (494)
Q Consensus 293 ~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~ 372 (494)
... +.+...... ++.+.....++.++++. .+.+++..++..++++++.+.|+++ ++++..+ .
T Consensus 231 -~~~-~~~~~~~~~-----------~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~--~ 292 (360)
T 3hdo_A 231 -EVI-AALDKIRDH-----------YNLDRLAQAACVAALRD--QAYLSECCRRIRETREWFTTELRSI-GYDVIPS--Q 292 (360)
T ss_dssp -HHH-HHHHHHSCS-----------CCSCHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHT-TCEECCC--S
T ss_pred -HHH-HHHHHhCCC-----------CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHC-CCEEcCC--C
Confidence 222 221111100 11222333334444442 4457788888999999999999998 4877533 4
Q ss_pred ccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHH
Q 011057 373 VPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLH 442 (494)
Q Consensus 373 ~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~ 442 (494)
.+++.+.+. +.+..++.+.|.++|+.++....+ ....++|++++ +.+++++|+++|+++.+
T Consensus 293 ~~~~~~~~~---~~~~~~l~~~l~~~gi~v~~~~~~---~~~~~iRis~~---~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 293 GNYLFATPP---DRDGKRVYDGLYARKVLVRHFSDP---LLAHGMRISIG---TREEMEQTLAALKEIGE 353 (360)
T ss_dssp SSEEEEECT---TCCHHHHHHHHHHTTEECBCCCST---TTTTSEEEECC---CHHHHHHHHHHHHHHHC
T ss_pred ccEEEEECC---CCCHHHHHHHHHHCCEEEEECCCC---CCCCEEEEEcC---CHHHHHHHHHHHHHHhc
Confidence 567777764 347889999999999988654322 23457999987 88999999888877654
No 119
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.93 E-value=7.8e-25 Score=220.34 Aligned_cols=331 Identities=11% Similarity=0.048 Sum_probs=221.5
Q ss_pred hHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHH-HHHHHHHHHh
Q 011057 69 EPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAF-KRKWQNKRKA 147 (494)
Q Consensus 69 ~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~-~~~~~~~~~~ 147 (494)
++.+.+++.+.+..... ...++. .++++.+++++|.+. +++|+||++|+.+++.++ ..
T Consensus 19 ~~~~~~a~~~~~~~~~~--~~~~~~----~~l~~~la~~~~~~~-------~~~~~~gt~al~~~~~~~~~~-------- 77 (393)
T 1mdo_A 19 GAEELAAVKTVLDSGWI--TTGPKN----QELEAAFCRLTGNQY-------AVAVSSATAGMHIALMALGIG-------- 77 (393)
T ss_dssp CHHHHHHHHHHHHHTCC--SSSHHH----HHHHHHHHHHHCCSE-------EEEESCHHHHHHHHHHHTTCC--------
T ss_pred CHHHHHHHHHHHhcCCc--CCChHH----HHHHHHHHHHhCCCc-------EEEecChHHHHHHHHHHcCCC--------
Confidence 46677888887765432 223333 345666899998853 899999999999888776 21
Q ss_pred cCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHH
Q 011057 148 EGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDL 227 (494)
Q Consensus 148 ~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~l 227 (494)
.+++|+++.++|.++..+++..|++++.++++++++.+|+++|++++++++++|+++ +++|.+.|+++|.++
T Consensus 78 -----~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~---~~~G~~~~~~~i~~l 149 (393)
T 1mdo_A 78 -----EGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPV---HYAGAPADLDAIYAL 149 (393)
T ss_dssp -----TTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCB---CGGGCCCCHHHHHHH
T ss_pred -----CCCEEEeCCCccHhHHHHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCCCceEEEEe---CCCCCcCCHHHHHHH
Confidence 125899999999999999999999999999986557899999999998888877654 479999999999999
Q ss_pred HHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCc--ccCCcCCceEEEEEeCCCCccccccccc-
Q 011057 228 LAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGH--KYGLVYAGIGWVIWRNKEDLPEELIFHI- 304 (494)
Q Consensus 228 a~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~h--K~l~~p~g~G~~~~~~~~~~~~~~~~~~- 304 (494)
|+++ ++++++|++|+.+... . . . .++. .|++++++| |++.++ .+|+++.+++...........
T Consensus 150 ~~~~------~~~li~D~a~~~g~~~-~-~--~-~~~~--~d~~~~S~~k~K~l~~~-~~g~~~~~~~~~~~~l~~~~~~ 215 (393)
T 1mdo_A 150 GERY------GIPVIEDAAHATGTSY-K-G--R-HIGA--RGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKFH 215 (393)
T ss_dssp HHHH------TCCBCEECTTCTTCEE-T-T--E-ETTS--SSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBT
T ss_pred HHHc------CCeEEEECccccCCeE-C-C--e-ecCC--CCeEEEeCCCCCccccc-cceEEEeCCHHHHHHHHHHHhc
Confidence 9999 9999999999865321 1 1 1 1111 789999999 998654 567777654433211111100
Q ss_pred CCCC--------CCCCCcc--cccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecC----
Q 011057 305 NYLG--------ADQPTFT--LNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKD---- 370 (494)
Q Consensus 305 ~y~~--------~~~~~~~--~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~---- 370 (494)
.+.. .....+. ..++......+....++.. .+++++..++..++++++.+.|.+++ +++...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~--l~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~ 292 (393)
T 1mdo_A 216 GLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQ--LQKLDALNARRAAIAAQYHQAMADLP-FQPLSLPSWEH 292 (393)
T ss_dssp TEECC-----------CCEESSCCCBCCCCHHHHHHHHHH--HHTHHHHHHHHHHHHHHHHHHHHTSS-CEECCCCSSCE
T ss_pred CCcccchhhhcccccccccccccCccCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCC-cccccCCCCCC
Confidence 0000 0000000 0011000122222222222 24466778888889999999999988 8875322
Q ss_pred -CCccEEEEEecCC-CCCCHHHHHHHHHhcCceeeccccCC-------------CCC-----CceEEEEEeccCCChHHH
Q 011057 371 -EGVPLVAFSLKDN-KRHDEFEVAELLRRFGWIVPAYTMPA-------------DAQ-----HITVLRVVIREDFSRTLA 430 (494)
Q Consensus 371 -~~~~~v~f~~~~~-~~~~~~~l~~~L~~~Gi~v~~~~~~~-------------~~~-----~~~~lRvs~~~~~t~~~i 430 (494)
....++.+.++.. .+.+..++.++|.++||.++....+. ... ...++|++++..+|++|+
T Consensus 293 ~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i 372 (393)
T 1mdo_A 293 IHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDF 372 (393)
T ss_dssp ECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHH
T ss_pred CceeEEEEEEecccccccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHH
Confidence 1334677777410 03578899999999999886543220 001 123799999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 011057 431 ERLVLDITKVLHELD 445 (494)
Q Consensus 431 d~~i~~l~~~~~~l~ 445 (494)
+++++.|+++++...
T Consensus 373 ~~~~~~l~~~~~~~~ 387 (393)
T 1mdo_A 373 DRVITALHQIAGQGS 387 (393)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999988765543
No 120
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.93 E-value=1.1e-23 Score=215.97 Aligned_cols=358 Identities=14% Similarity=0.056 Sum_probs=232.5
Q ss_pred HHHHHHHHHhhh-hcCCCCCcccccccCC-ChHHHHHHHHHHhcc-----cCCCCCCChhhHHHHHHHHHHHHHHhCCCC
Q 011057 40 EAAYQIINDELM-LDGNPRLNLASFVTTW-MEPECDKLMMAAINK-----NYVDMDEYPVTTELQNRCVNIIARLFNAPL 112 (494)
Q Consensus 40 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~-----~~~~~~~~~~~~~le~~~~~~la~l~g~~~ 112 (494)
+++.+....... .++...++|+.+.++. .+|.+.+++.+++.. ....|...++..++++++.+++. .|.+.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~ 130 (449)
T 3qgu_A 53 PEIARRRKAHQEKNPDAKIISLGIGDTTEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFY--GHAGR 130 (449)
T ss_dssp HHHHHHHHHHHHHCTTCCCEECSSCCCCCCCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHH--TTTTC
T ss_pred HHHHHHHHHHHhhCCCCCEEEeeCCCCCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHH--cCCCC
Confidence 344444444333 3455667777765443 567888888887763 22234444566777777666655 44433
Q ss_pred CCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCe----------eEEEe
Q 011057 113 EDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVE----------LKEVK 182 (494)
Q Consensus 113 ~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~----------v~~v~ 182 (494)
+ ...+++|+|+++++..+ .++.. .+++|+++.++|.++...++..|.+ ++.++
T Consensus 131 ~---~~~i~~t~G~~~al~~~-~~l~~-------------~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~ 193 (449)
T 3qgu_A 131 A---ADEIFISDGSKCDIARI-QMMFG-------------SKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMV 193 (449)
T ss_dssp C---GGGEEEESCHHHHHHHH-HHHHC-------------SSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEE
T ss_pred C---HHHEEEccCHHHHHHHH-HHHhC-------------CCCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEe
Confidence 1 24689999999999876 44422 1268999999999999999999998 99999
Q ss_pred ccCC-ccccCHHHHHHhhhhCCeEEEEeeCCCCcccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCc
Q 011057 183 LSEG-YYVMDPVKAVEMVDENTICVAAILGSTLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPE 258 (494)
Q Consensus 183 ~~~~-~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~ 258 (494)
++++ .+..|++++ +++++|++++++||||.+.+ +++|+++|+++ |+++++|++|+++...-..+.
T Consensus 194 ~~~~~~~~~~~~~~-----~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~------~~~li~Dea~~~~~~~~~~~~ 262 (449)
T 3qgu_A 194 CNPDNHFFPDLSKA-----KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKN------GSILVYDAAYALYISNPDCPK 262 (449)
T ss_dssp CCGGGTTCCCGGGC-----CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTGGGCCCTTSCS
T ss_pred cccccCCcCChhHc-----CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHC------CcEEEEEcchHhhhcCCCCCC
Confidence 8753 344554321 57889999999999999865 78888999999 999999999998642100000
Q ss_pred cccccc-CCCceEEEEcCcccCC-cCCceEEEEEeCCCCccc-ccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHh
Q 011057 259 LEWDFR-LPLVKSINVSGHKYGL-VYAGIGWVIWRNKEDLPE-ELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRL 335 (494)
Q Consensus 259 ~~~~~~-~~~~D~~~~~~hK~l~-~p~g~G~~~~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l 335 (494)
.-..+. ..+.+++..+++|+++ ++.++|+++++++ .+.. .......+... ...+......+++.+++..+
T Consensus 263 ~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~a~~~~l 335 (449)
T 3qgu_A 263 TIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKA-LKYANGEPVHADWNRV------MTTCFNGASNIVQAGGLACL 335 (449)
T ss_dssp SGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECCTT-CBCTTSCBHHHHHHHH------HHHSCCCCCHHHHHHHHHHT
T ss_pred CHhhccCCCCcEEEEecchhhcCCccceeEEEecCHH-HHhhhhhhHHHHHHHH------hhcccCCCCHHHHHHHHHHH
Confidence 001111 1346788889999985 7788999987553 2211 00000000000 00000012233455555555
Q ss_pred cH---hHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhc-CceeeccccCCCC
Q 011057 336 GF---EGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRF-GWIVPAYTMPADA 411 (494)
Q Consensus 336 ~~---~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~ 411 (494)
.. +.++++.+++.++++++.+.|++++ +++..+. ...++.+.+. +.+..+++++|.++ ||.+....... .
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~-~~~~~~~~~~---~~~~~~~~~~l~~~~gI~v~pg~~f~-~ 409 (449)
T 3qgu_A 336 QPEGLKEMNAMIKFYKENAQILKTTFTEMG-FSVYGGD-DAPYIWVGFP---GKPSWDVFAEILERCNIVTTPGSGYG-P 409 (449)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEESS-SSSEEEEECT---TSCHHHHHHHHHHHHCEECEEGGGGC-G
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHCC-CeeeCCC-CeeEEEEECC---CCCHHHHHHHHHHHCCEEEecchHhC-C
Confidence 43 4567788888999999999999985 8877653 4567777764 45788999888876 99875433221 2
Q ss_pred CCceEEEEEeccCCChHHHHHHHHHHHHHHH
Q 011057 412 QHITVLRVVIREDFSRTLAERLVLDITKVLH 442 (494)
Q Consensus 412 ~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~ 442 (494)
.+..++|+++.. +.++++++++.|+++++
T Consensus 410 ~~~~~iRis~~~--~~e~i~~~l~~l~~~~~ 438 (449)
T 3qgu_A 410 AGEGFVRASAFG--SRENILEAVRRFKEAYG 438 (449)
T ss_dssp GGTTEEEEECCS--CHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEecC--CHHHHHHHHHHHHHHHH
Confidence 345789999653 88888888877776653
No 121
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.93 E-value=4.5e-24 Score=212.08 Aligned_cols=282 Identities=16% Similarity=0.087 Sum_probs=204.0
Q ss_pred HHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCC-CeEEeCCCcchHHHHHHHHcCCe
Q 011057 99 RCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDK-PNIVTGANVQVCWEKFARYFEVE 177 (494)
Q Consensus 99 ~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~-~~vi~~~~~h~s~~~~~~~~G~~ 177 (494)
++++.+++++|.++ ..+++|+|+++++..++.++.. .+ ++|+++.++|..+...++..|++
T Consensus 62 ~lr~~la~~~~~~~-----~~v~~~~G~~~ai~~~~~~~~~-------------~g~d~Vl~~~p~~~~~~~~~~~~g~~ 123 (356)
T 1fg7_A 62 AVIENYAQYAGVKP-----EQVLVSRGADEGIELLIRAFCE-------------PGKDAILYCPPTYGMYSVSAETIGVE 123 (356)
T ss_dssp HHHHHHHHHHTSCG-----GGEEEESHHHHHHHHHHHHHCC-------------TTTCEEEECSSSCTHHHHHHHHHTCE
T ss_pred HHHHHHHHHhCCCh-----HHEEEcCCHHHHHHHHHHHHhC-------------CCCCEEEEeCCChHHHHHHHHHcCCE
Confidence 46667888888864 3589999999999988887732 12 58999999999999999999999
Q ss_pred eEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHHHHH--hhcccCCCceEEEeccccccccccc
Q 011057 178 LKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAE--KNKETGWDTPIHVDAASGGFIAPFL 255 (494)
Q Consensus 178 v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~la~~--~~~~~~~~~~l~vD~a~~~~~~~~~ 255 (494)
++.++++++ +.+|+++|+++++ ++++|++++++||||.+.|.++|.++++. + ++++++|++|+.+.. .
T Consensus 124 ~~~v~~~~~-~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~------~~~li~De~~~~~~~--~ 193 (356)
T 1fg7_A 124 CRTVPTLDN-WQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTRG------KAIVVADEAYIEFCP--Q 193 (356)
T ss_dssp EEECCCCTT-SCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTT------TCEEEEECTTGGGSG--G
T ss_pred EEEeeCCCC-CCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC------CCEEEEEccchhhcC--C
Confidence 999998754 7899999999998 88999999999999999886666555544 7 999999999987641 0
Q ss_pred CCcccccc-cCCCceEEEEcCcccCC-cCCceEEEEEeCCCCccccccc-ccCCCCCCCCCcccccCcchHHHHHHHHHH
Q 011057 256 YPELEWDF-RLPLVKSINVSGHKYGL-VYAGIGWVIWRNKEDLPEELIF-HINYLGADQPTFTLNFSKGSSQVIAQYYQL 332 (494)
Q Consensus 256 ~~~~~~~~-~~~~~D~~~~~~hK~l~-~p~g~G~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~s~~~~~~~a~~~al 332 (494)
... ..+ ...+.+++..+++|+++ ++.++|++++++ ..+ ..+.. ...| + .+.+++.+++
T Consensus 194 -~~~-~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~-~~~-~~l~~~~~~~------------~---~~~~~~~a~~ 254 (356)
T 1fg7_A 194 -ASL-AGWLAEYPHLAILRTLSKAFALAGLRCGFTLANE-EVI-NLLMKVIAPY------------P---LSTPVADIAA 254 (356)
T ss_dssp -GCS-GGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECH-HHH-HHHHHHSCSS------------C---SCHHHHHHHH
T ss_pred -CcH-HHHHhhCCCEEEEecchHhhcCchhhhEEEEeCH-HHH-HHHHHhcCCC------------C---CCHHHHHHHH
Confidence 110 111 22245778889999885 566789998743 222 22111 1111 1 2234456666
Q ss_pred HHhcHhH---HHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeec-cccC
Q 011057 333 IRLGFEG---YRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPA-YTMP 408 (494)
Q Consensus 333 ~~l~~~g---~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~-~~~~ 408 (494)
..+...+ +++..++..++++++.+.|++++++....++ ..+++.+.+. +..++.++|.++|+.++. ...+
T Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~-----~~~~l~~~L~~~gI~v~~~g~~~ 328 (356)
T 1fg7_A 255 QALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDS-ETNYILARFK-----ASSAVFKSLWDQGIILRDQNKQP 328 (356)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCC-SSSEEEEEET-----THHHHHHHHHHTTEECEECTTST
T ss_pred HHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCC-CCeEEEEECC-----CHHHHHHHHHHCCEEEEECCCCC
Confidence 6666554 6777888889999999999998764333333 5677777773 567899999999999865 3222
Q ss_pred CCCCCceEEEEEeccCCChHHHHHHHHHHHH
Q 011057 409 ADAQHITVLRVVIREDFSRTLAERLVLDITK 439 (494)
Q Consensus 409 ~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~ 439 (494)
. . ..++|++++ +.++++++++.|++
T Consensus 329 ~-~--~~~iRis~~---~~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 329 S-L--SGCLRITVG---TREESQRVIDALRA 353 (356)
T ss_dssp T-C--TTEEEEECC---CHHHHHHHHHHHHT
T ss_pred C-C--CCeEEEEeC---CHHHHHHHHHHHHh
Confidence 1 1 247999987 67888888877764
No 122
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.93 E-value=4.4e-24 Score=210.14 Aligned_cols=314 Identities=14% Similarity=0.073 Sum_probs=220.4
Q ss_pred CCcccccc-cCCChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHH
Q 011057 57 RLNLASFV-TTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGL 135 (494)
Q Consensus 57 ~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~ 135 (494)
.+.|.+.. +.+++|.+.+++.+.+.. ...| ..++.. ++++.+++++|.++ ..+++|+|+++++.+++.
T Consensus 18 ~i~l~~n~~~~~~~~~v~~a~~~~~~~-~~~y-~~~~~~----~lr~~la~~~~~~~-----~~i~~t~G~~~~l~~~~~ 86 (337)
T 3p1t_A 18 AVCLAFNENPEAVEPRVQAAIAAAAAR-INRY-PFDAEP----RVMRKLAEHFSCPE-----DNLMLVRGIDECFDRISA 86 (337)
T ss_dssp CEECSSCCCCSCCCHHHHHHHHHHGGG-TTSC-CTTHHH----HHHHHHHHHHTSCG-----GGEEEESHHHHHHHHHHH
T ss_pred ceEeeCCCCCCCCCHHHHHHHHHhhhh-hccC-CCCchH----HHHHHHHHHhCcCH-----HHEEEeCCHHHHHHHHHH
Confidence 34455543 334568888888887654 2223 223433 45666889999865 358999999999988776
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCc
Q 011057 136 AFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLN 215 (494)
Q Consensus 136 a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~t 215 (494)
++ . +++|+++.++|..+...++..|++++.++++++ +.+|+++|+++ .++++|++++++|||
T Consensus 87 ~~--~-------------gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~--~~~~~v~i~~p~npt 148 (337)
T 3p1t_A 87 EF--S-------------SMRFVTAWPGFDGYRARIAVSGLRHFEIGLTDD-LLLDPNDLAQV--SRDDCVVLANPSNPT 148 (337)
T ss_dssp HS--T-------------TSEEEEESSSCSHHHHHHTTSCCEEEEECBCTT-SSBCHHHHTTC--CTTEEEEEESSCTTT
T ss_pred hc--C-------------CCeEEEeCCCcHHHHHHHHHcCCEEEEecCCCC-CCCCHHHHHhh--cCCCEEEEeCCCCCC
Confidence 65 1 268999999999999999999999999998865 78999999887 467899999999999
Q ss_pred ccccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCC-cCCceEEEEEeCCC
Q 011057 216 GEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGL-VYAGIGWVIWRNKE 294 (494)
Q Consensus 216 G~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~G~~~~~~~~ 294 (494)
|.+.|+++|.++|+++ ++ +++|++|+.+.. ... ........+++..+++|++. ++.++|+++.+++
T Consensus 149 G~~~~~~~l~~l~~~~------~~-~ivDea~~~~~~--~~~---~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~- 215 (337)
T 3p1t_A 149 GQALSAGELDQLRQRA------GK-LLIDETYVDYSS--FRA---RGLAYGENELVFRSFSKSYGLAGLRLGALFGPSE- 215 (337)
T ss_dssp CCCCCHHHHHHHHHHC------SE-EEEECTTGGGSS--CSS---SCCCCBTTEEEEEESSSTTCCTTTCCEEEECCHH-
T ss_pred CCCCCHHHHHHHHHhC------Cc-EEEECCChhhcc--ccc---cccccCCCEEEEeeCchhccCcchheEEEEeCHH-
Confidence 9999999999999999 86 666999986431 111 11122356788889999885 6778898876432
Q ss_pred CcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhc-HhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCc
Q 011057 295 DLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG-FEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGV 373 (494)
Q Consensus 295 ~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~ 373 (494)
.+ ..+... . .. ++.+.. .+.++...+. .+.+.+..++..++++++.+.|++++ +++..+ ..
T Consensus 216 ~~-~~l~~~---~----~~----~~~~~~---~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~--~~ 277 (337)
T 3p1t_A 216 LI-AAMKRK---Q----WF----CNVGTL---DLHALEAALDNDRAREAHIAKTLAQRRRVADALRGLG-YRVASS--EA 277 (337)
T ss_dssp HH-HHHHTT---S----CT----TCSCHH---HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTT-CCBCCC--SS
T ss_pred HH-HHHHhh---c----CC----CCCCHH---HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCc-CEECCC--CC
Confidence 22 111110 0 00 112222 2333333333 23466777788888999999999984 776543 45
Q ss_pred cEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHH
Q 011057 374 PLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVL 441 (494)
Q Consensus 374 ~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~ 441 (494)
+++.+... +..++.+.|.++||.+.....+. ...++|++++ +.+++++++++|+++.
T Consensus 278 ~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~---~~~~iRis~~---~~~~~~~l~~al~~~~ 334 (337)
T 3p1t_A 278 NFVLVENA-----AGERTLRFLRERGIQVKDAGQFG---LHHHIRISIG---REEDNDRLLAALAEYS 334 (337)
T ss_dssp SEEEEECT-----TTHHHHHHHHHTTEECEEGGGGT---CCSEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred eEEEEEcC-----CHHHHHHHHHHCCeEEEECccCC---CCCeEEEecC---CHHHHHHHHHHHHHHh
Confidence 77777753 23578889999999986544332 1357999987 7889999988887764
No 123
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.93 E-value=1.5e-24 Score=220.46 Aligned_cols=350 Identities=12% Similarity=0.051 Sum_probs=239.7
Q ss_pred CCCcccccccCC-ChHHHHHHHHHHhcccC--CCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHH
Q 011057 56 PRLNLASFVTTW-MEPECDKLMMAAINKNY--VDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIML 132 (494)
Q Consensus 56 ~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~--~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~ 132 (494)
..++|+.+.+.. ++|.+.+++.+.+.... ..|....+..++++.+.+++.+.+|.+.+. ...+++|+|+++|+..
T Consensus 29 ~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~--~~~i~~~~g~~~a~~~ 106 (422)
T 3fvs_A 29 DVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDP--LRNVLVTVGGYGALFT 106 (422)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCH--HHHEEEESHHHHHHHH
T ss_pred CceEeCCCCCCCCCCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCC--CCcEEEECChHHHHHH
Confidence 445666655543 46788899888876533 345555577889999999999999976421 0258999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccC-----------CccccCHHHHHHhhhh
Q 011057 133 AGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSE-----------GYYVMDPVKAVEMVDE 201 (494)
Q Consensus 133 a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~-----------~~~~~d~~~L~~~i~~ 201 (494)
++.++... +++|+++.++|..+...++..|++++.+++++ +++.+|+++|++++++
T Consensus 107 ~~~~~~~~-------------gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~ 173 (422)
T 3fvs_A 107 AFQALVDE-------------GDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS 173 (422)
T ss_dssp HHHHHCCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCT
T ss_pred HHHHHcCC-------------CCEEEEcCCCchhhHHHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcCC
Confidence 88876321 25799999999999999999999999999875 2467999999999998
Q ss_pred CCeEEEEeeCCCCccccc---CHHHHHHHHHHhhcccCCCceEEEecccccccccccCCccc--cccc-CCCceEEEEcC
Q 011057 202 NTICVAAILGSTLNGEFE---DVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELE--WDFR-LPLVKSINVSG 275 (494)
Q Consensus 202 ~t~~vv~~~~~~~tG~~~---~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~~-~~~~D~~~~~~ 275 (494)
++++|++++++||||.+. ++++|+++|+++ |+++++|++|+.+.. ...... ..+. ..+.+++..++
T Consensus 174 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~S~ 245 (422)
T 3fvs_A 174 RTKALVLNTPNNPLGKVFSREELELVASLCQQH------DVVCITDEVYQWMVY--DGHQHISIASLPGMWERTLTIGSA 245 (422)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBC--TTCCCCCGGGSTTTGGGEEEEEEH
T ss_pred CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHc------CcEEEEEccchhhcc--CCCCCCChhhcccccCcEEEEecc
Confidence 899999999999999997 599999999999 999999999987542 111000 0111 12456777788
Q ss_pred cccCC-cCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHH------hcHhHHHHHHHHHH
Q 011057 276 HKYGL-VYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIR------LGFEGYRNVMENCH 348 (494)
Q Consensus 276 hK~l~-~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~------l~~~g~~~~~~~~~ 348 (494)
+|++. ++.++|+++.+++ .+ ..+....... .++.+.....++.++++. ...+.+++..++..
T Consensus 246 sK~~g~~G~r~G~~~~~~~-~~-~~~~~~~~~~---------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 314 (422)
T 3fvs_A 246 GKTFSATGWKVGWVLGPDH-IM-KHLRTVHQNS---------VFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQ 314 (422)
T ss_dssp HHHHTCGGGCCEEEECCHH-HH-HHHHHHHHTT---------TCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHH
T ss_pred hhccCCccceEEEEEeCHH-HH-HHHHHHHhhc---------cCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHH
Confidence 99985 6678899876542 22 1111100000 011222333333444432 12345678888899
Q ss_pred HHHHHHHHHHhhCCCeEEeecCCCccEEEEEecCCC-CCC----------HHHHHHHHH-hcCceeeccccCCC----CC
Q 011057 349 ENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNK-RHD----------EFEVAELLR-RFGWIVPAYTMPAD----AQ 412 (494)
Q Consensus 349 ~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~-~~~----------~~~l~~~L~-~~Gi~v~~~~~~~~----~~ 412 (494)
++++++.+.|++++ +++..+. ...++.+.+.... ..+ ..++++.|. ++|+.+........ ..
T Consensus 315 ~~~~~l~~~L~~~g-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~ 392 (422)
T 3fvs_A 315 RCRDHMIRSLQSVG-LKPIIPQ-GSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKH 392 (422)
T ss_dssp HHHHHHHHHHHTTT-CEEEBCS-BSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTT
T ss_pred HHHHHHHHHHHHcC-CeecCCC-eeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCC
Confidence 99999999999985 8876554 3455555553200 000 457777755 57998754322110 13
Q ss_pred CceEEEEEeccCCChHHHHHHHHHHHHHHHH
Q 011057 413 HITVLRVVIREDFSRTLAERLVLDITKVLHE 443 (494)
Q Consensus 413 ~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~ 443 (494)
+..++|+++.. ++++++.+++.|++++++
T Consensus 393 ~~~~iRis~~~--~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 393 FDHYIRFCFVK--DEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp SCSEEEEECCC--CHHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEecC--CHHHHHHHHHHHHHHHhh
Confidence 45789999875 889999888888887653
No 124
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.93 E-value=2.4e-25 Score=220.17 Aligned_cols=327 Identities=17% Similarity=0.140 Sum_probs=211.2
Q ss_pred cccccccCCChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHH
Q 011057 59 NLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFK 138 (494)
Q Consensus 59 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~ 138 (494)
.|.+...+++++.+.+++.++... ...|...++.. ++++++++++|.+. .++++||++|+.+++.++.
T Consensus 7 ~~~~~~~~~p~~~~~~a~~~~~~~-~~~y~~~~~~~----~l~~~la~~~g~~~-------~~~~~~gt~a~~~~~~~~~ 74 (347)
T 1jg8_A 7 DLRSDTVTKPTEEMRKAMAQAEVG-DDVYGEDPTIN----ELERLAAETFGKEA-------ALFVPSGTMGNQVSIMAHT 74 (347)
T ss_dssp ECSCGGGCCCCHHHHHHHHTCCCC-CGGGTCCHHHH----HHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHC
T ss_pred EeccccCCCCCHHHHHHHhcCCCC-CcccCCChHHH----HHHHHHHHHhCCce-------EEEecCcHHHHHHHHHHhc
Confidence 344444555667788877654321 11233344444 45567999999864 7889999999987776652
Q ss_pred HHHHHHHHhcCCCCCCCeEEeCCCcchHHHH---HHHHcCCeeEEEeccCCccccCHHHHHHhhhh------CCeEEEEe
Q 011057 139 RKWQNKRKAEGKPFDKPNIVTGANVQVCWEK---FARYFEVELKEVKLSEGYYVMDPVKAVEMVDE------NTICVAAI 209 (494)
Q Consensus 139 ~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~---~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~------~t~~vv~~ 209 (494)
+ .+++|+++.++|.+... .+...|++++.+ .+++ +.+|+++|++++++ +|++|+++
T Consensus 75 ~-------------~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~~-~~~d~~~l~~~i~~~~~~~~~~~~v~~~ 139 (347)
T 1jg8_A 75 Q-------------RGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PGKN-GAMDPDDVRKAIRPRNIHFPRTSLIAIE 139 (347)
T ss_dssp C-------------TTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CEET-TEECHHHHHHHSCCSCTTSCCEEEEEEE
T ss_pred C-------------CCCEEEEcCcchhhhccccchhhccCeEEEEe-cCCC-CccCHHHHHHHhccccccccCceEEEEe
Confidence 2 13689999999976543 567789998888 4443 67899999999975 57899999
Q ss_pred eCCCCc-ccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCce
Q 011057 210 LGSTLN-GEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGI 285 (494)
Q Consensus 210 ~~~~~t-G~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~ 285 (494)
+++||| |.+.| +++|.++|+++ |+++++|++|..+...+...... .+ ..++|.+++++||++.+|.
T Consensus 140 ~~~npt~G~~~~~~~l~~i~~~a~~~------~~~li~D~a~~~~~~~~~~~~~~-~~-~~~~d~~~~s~sK~l~~~~-- 209 (347)
T 1jg8_A 140 NTHNRSGGRVVPLENIKEICTIAKEH------GINVHIDGARIFNASIASGVPVK-EY-AGYADSVMFCLSKGLCAPV-- 209 (347)
T ss_dssp SSBTTTTSBCCCHHHHHHHHHHHHHH------TCEEEEEETTHHHHHHHHCCCHH-HH-HHTCSEEEEESSSTTCCSS--
T ss_pred ccccccCCccCcHHHHHHHHHHHHHC------CCEEEeehhhhhcchhhcCCChH-Hh-cccccEEEEecccccCCCc--
Confidence 999999 99865 57889999999 99999999985321111100000 11 1257888889999987664
Q ss_pred EEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeE
Q 011057 286 GWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFN 365 (494)
Q Consensus 286 G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~ 365 (494)
|++++.++..+.........+ +... ..+.........+++.+. +..++..++++++.+.|+++ +++
T Consensus 210 G~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~l~~~L~~~-~~~ 275 (347)
T 1jg8_A 210 GSVVVGDRDFIERARKARKML-GGGM-------RQAGVLAAAGIIALTKMV-----DRLKEDHENARFLALKLKEI-GYS 275 (347)
T ss_dssp CEEEEECHHHHHHHHHHHHHH-TCCC-------SSTHHHHHHHHHHHHHSS-----TTHHHHHHHHHHHHHHHHHH-TCB
T ss_pred eEEEEcCHHHHHHHHHHHHHc-CCch-------hHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhc-Cce
Confidence 444444433221111111111 1110 111111122223333221 12333446778889999888 476
Q ss_pred EeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHH
Q 011057 366 IVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHEL 444 (494)
Q Consensus 366 ~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l 444 (494)
+...+...+++.+.++. .+.+..++.++|.++|+.+... +...+|++++..+++++++++++.|+++++.+
T Consensus 276 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~~-------~~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~~ 346 (347)
T 1jg8_A 276 VNPEDVKTNMVILRTDN-LKVNAHGFIEALRNSGVLANAV-------SDTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 346 (347)
T ss_dssp CCGGGCCSSEEEEECTT-SSSCHHHHHHHHHHHTEECEEE-------ETTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred eccCCCcceEEEEEccc-ccCCHHHHHHHHHHCCCEEecC-------CCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 53322356778788742 2457889999999999987542 13469999988889999999999999887653
No 125
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.93 E-value=6.1e-24 Score=215.44 Aligned_cols=333 Identities=15% Similarity=0.073 Sum_probs=219.8
Q ss_pred ChHHHHHHHHHHhcccC-------CCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHH
Q 011057 68 MEPECDKLMMAAINKNY-------VDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRK 140 (494)
Q Consensus 68 ~~p~~~~~~~~~~~~~~-------~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~ 140 (494)
.+|.+.+++.+.+.... ..+...+...++++.+++++++++|.+. ..++++ +|++|+.+++.++...
T Consensus 37 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~-----~~i~~~-sGt~a~~~~~~~~~~~ 110 (417)
T 3n0l_A 37 TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKF-----ANVQPN-SGSQANQGVYAALINP 110 (417)
T ss_dssp CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE-----EECCCS-SHHHHHHHHHHHHSCT
T ss_pred CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCC-----cceEec-cHHHHHHHHHHHhcCC
Confidence 46888888887774322 1122335667888888999999999964 234444 4589999888777321
Q ss_pred HHHHHHhcCCCCCCCeEEeCCCcchHHHH---HHHHcCCe--eEEEeccCCccccCHHHHHHhhh-hCCeEEEEeeCCCC
Q 011057 141 WQNKRKAEGKPFDKPNIVTGANVQVCWEK---FARYFEVE--LKEVKLSEGYYVMDPVKAVEMVD-ENTICVAAILGSTL 214 (494)
Q Consensus 141 ~~~~~~~~g~~~~~~~vi~~~~~h~s~~~---~~~~~G~~--v~~v~~~~~~~~~d~~~L~~~i~-~~t~~vv~~~~~~~ 214 (494)
+++|+++.++|.++.. .....|.. ++.++++ +++.+|+++|+++++ .++++|+++++++
T Consensus 111 -------------gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~~- 175 (417)
T 3n0l_A 111 -------------GDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVE-LDGRIDYEKVREIAKKEKPKLIVCGASAY- 175 (417)
T ss_dssp -------------TCEEEEECC----------------CCSEEEEECCC-TTSSCCHHHHHHHHHHHCCSEEEECCSSC-
T ss_pred -------------CCEEEecccccccccchhhhhhhhcceeeeEeccCC-CCCCcCHHHHHHHHHhcCCeEEEECCccc-
Confidence 2689999998876544 33444444 4555566 347899999999998 5889888777774
Q ss_pred cccccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCC
Q 011057 215 NGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKE 294 (494)
Q Consensus 215 tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~ 294 (494)
|.+.|+++|.++|+++ |+++++|++|+.+.. ........ ...+|++++++||++.++. .|+++.+++.
T Consensus 176 -G~~~~l~~i~~l~~~~------~~~li~Dea~~~g~~--~~~~~~~~--~~~~di~~~s~sK~l~g~~-~G~~~~~~~~ 243 (417)
T 3n0l_A 176 -ARVIDFAKFREIADEI------GAYLFADIAHIAGLV--VAGEHPSP--FPYAHVVSSTTHKTLRGPR-GGIIMTNDEE 243 (417)
T ss_dssp -CSCCCHHHHHHHHHHH------TCEEEEECTTTHHHH--HTTSSCCC--TTTCSEEEEESSTTTCSCS-CEEEEESCHH
T ss_pred -CccCCHHHHHHHHHHc------CCEEEEECccchhhh--hcccCCCc--cccceEEEeeCccccCCCC-eeEEEECCHH
Confidence 9999999999999999 999999999865432 11111111 2257999999999986555 4888776433
Q ss_pred CcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCcc
Q 011057 295 DLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVP 374 (494)
Q Consensus 295 ~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~ 374 (494)
.. ..+... .+.. ..++.+.....++.+++.....++++++.++..++++++.+.|++.+ +++...+...+
T Consensus 244 ~~-~~~~~~-~~~~-------~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~ 313 (417)
T 3n0l_A 244 LA-KKINSA-IFPG-------IQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDRK-FKLVSDGTDNH 313 (417)
T ss_dssp HH-HHHHHH-HTTT-------TCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSS
T ss_pred HH-HHHhhh-hCCc-------ccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCC-ceeccCCCCce
Confidence 22 111110 0000 01233344555666666665556678889999999999999999954 88776433456
Q ss_pred EEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCC---CCCceEEEEEecc----CCChHHHHHHHHHHHHHHHHH
Q 011057 375 LVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPAD---AQHITVLRVVIRE----DFSRTLAERLVLDITKVLHEL 444 (494)
Q Consensus 375 ~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~---~~~~~~lRvs~~~----~~t~~~id~~i~~l~~~~~~l 444 (494)
++.+.+.+ .+.+...+.+.|.++|+.+.....|.. ......+|+++.. ..++++++++++.|+++++..
T Consensus 314 ~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 389 (417)
T 3n0l_A 314 LVLMSFLD-REFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDV 389 (417)
T ss_dssp EEEEECTT-SSSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEccc-CCCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 77777643 356788899999999999865443322 1223569998753 256799999999999888653
No 126
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.93 E-value=1.4e-23 Score=211.08 Aligned_cols=335 Identities=12% Similarity=0.016 Sum_probs=215.2
Q ss_pred CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHH
Q 011057 67 WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRK 146 (494)
Q Consensus 67 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~ 146 (494)
..++.+.+++.+++.... +...+... ++++.+++++|.+. ++++++||+|+.+++.+++...
T Consensus 12 ~~~~~~~~a~~~~~~~~~--~~~~~~~~----~l~~~la~~~~~~~-------~i~~~sGt~a~~~al~~~~~~~----- 73 (390)
T 3b8x_A 12 TWDDLEYKAIQSVLDSKM--FTMGEYVK----QYETQFAKTFGSKY-------AVMVSSGSTANLLMIAALFFTK----- 73 (390)
T ss_dssp CCCHHHHHHHHHHHHHTC--CSSCHHHH----HHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHTTSSS-----
T ss_pred CCCHHHHHHHHHHHHcCC--CCCChHHH----HHHHHHHHHHCCCc-------EEEECCHHHHHHHHHHHHHhhh-----
Confidence 346778888888876532 22334444 45566899999863 7889999999998887762100
Q ss_pred hcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHH
Q 011057 147 AEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLND 226 (494)
Q Consensus 147 ~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~ 226 (494)
..+.. .+++|+++.++|.++..+++..|++++.++++++++.+|+++|++++++++++|++++ ++|...|+++|.+
T Consensus 74 ~~~~~-~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~~~~~i~~ 149 (390)
T 3b8x_A 74 KPRLK-KGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTDSTKAILTVN---LLGNPNNFDEINK 149 (390)
T ss_dssp SCSCC-TTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCTTEEEEEEEC---GGGCCCCHHHHHH
T ss_pred hcCCC-CcCEEEECCCCcHHHHHHHHHcCCEEEEEecCccccCcCHHHHHHHhCcCCeEEEEEC---CccChhhHHHHHH
Confidence 00010 1358999999999999999999999999999865578999999999998888888763 6788999999999
Q ss_pred HHHHhhcccCCCceEEEecccccccccccCCcccccccC-CCceEEEEcCcccCCcCCceEEEEEeCCCCcccccccc-c
Q 011057 227 LLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRL-PLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFH-I 304 (494)
Q Consensus 227 la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~-~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~-~ 304 (494)
+|+++ |+++|+|+||+.+..+ .. . .++. ..+.++++.+.|.+.+|.| |+++++++.......... .
T Consensus 150 l~~~~------~~~li~D~a~~~g~~~--~~--~-~~g~~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~~~~~~~~~~ 217 (390)
T 3b8x_A 150 IIGGR------DIILLEDNCESMGATF--NN--K-CAGTFGLMGTFSSFYSNHIATMEG-GCIVTDDEEIYHILLCIRAH 217 (390)
T ss_dssp HHTTS------CCEEEEECTTCTTCEE--TT--E-ETTSSSSEEEEECCTTSSSCSSSC-EEEEESCHHHHHHHHHHTBT
T ss_pred HHHHc------CCEEEEECcCcccCEE--CC--c-ccccccceEEEEccCCCCCccCCc-eEEEeCCHHHHHHHHHHHhc
Confidence 99999 9999999999965432 11 1 1111 1233444333444555555 777776532211100000 0
Q ss_pred CCCCC-----------------CCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEe
Q 011057 305 NYLGA-----------------DQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIV 367 (494)
Q Consensus 305 ~y~~~-----------------~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 367 (494)
.+... ....+...+.+.....+.++.++..+ +.+++..++..++++++.+.|++++++++.
T Consensus 218 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l--~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~ 295 (390)
T 3b8x_A 218 GWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQL--KKLPRFISVRRKNAEYFLDKFKDHPYLDVQ 295 (390)
T ss_dssp TBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCSSEEEC
T ss_pred CCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCcccC
Confidence 00000 00000001211112223334444333 456778888999999999999998778876
Q ss_pred ecCCCcc--EEEEEecCCCCCCHHHHHHHHHhcCceeeccccCC---C-C--C----------------CceEEEEEecc
Q 011057 368 SKDEGVP--LVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPA---D-A--Q----------------HITVLRVVIRE 423 (494)
Q Consensus 368 ~~~~~~~--~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~---~-~--~----------------~~~~lRvs~~~ 423 (494)
.++...+ .+.+.+....+.+..++.+.|.++||.++.+..+. . . . ....+|++++.
T Consensus 296 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~ 375 (390)
T 3b8x_A 296 QETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQ 375 (390)
T ss_dssp CCCSBCCCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCS
T ss_pred CCCCCcccEEEEEEecCcCcccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCC
Confidence 5421223 34456543224578899999999999886532111 0 0 0 01369999999
Q ss_pred CCChHHHHHHHHHH
Q 011057 424 DFSRTLAERLVLDI 437 (494)
Q Consensus 424 ~~t~~~id~~i~~l 437 (494)
.+|.+|++++++.|
T Consensus 376 ~~t~~di~~i~~~l 389 (390)
T 3b8x_A 376 IELFDEIDYLREVL 389 (390)
T ss_dssp SCCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999888765
No 127
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.93 E-value=7.1e-24 Score=213.60 Aligned_cols=330 Identities=13% Similarity=0.008 Sum_probs=217.3
Q ss_pred hHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHH-HHHHHHHHHh
Q 011057 69 EPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAF-KRKWQNKRKA 147 (494)
Q Consensus 69 ~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~-~~~~~~~~~~ 147 (494)
+|++.+++.+++..++. ...+ ....++++.+++++|.+. +++|+||++|+.+++.++ ..
T Consensus 11 ~~~v~~a~~~~~~~~~~---~~~g--~~~~~l~~~la~~~~~~~-------v~~~~ggt~al~~~~~~l~~~-------- 70 (394)
T 1o69_A 11 GGNELKYIEEVFKSNYI---APLG--EFVNRFEQSVKDYSKSEN-------ALALNSATAALHLALRVAGVK-------- 70 (394)
T ss_dssp -CCHHHHHHHHHHHTTT---SCTT--HHHHHHHHHHHHHHCCSE-------EEEESCHHHHHHHHHHHTTCC--------
T ss_pred CHHHHHHHHHHHHcCCc---cCCC--hHHHHHHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHcCCC--------
Confidence 35577777777765322 1112 233456677899998843 899999999999888776 21
Q ss_pred cCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhh---CCeEEEEeeCCCCcccccCHHHH
Q 011057 148 EGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDE---NTICVAAILGSTLNGEFEDVKLL 224 (494)
Q Consensus 148 ~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~---~t~~vv~~~~~~~tG~~~~l~~I 224 (494)
.+++|+++.++|.++..+++..|++++.+++++ ++.+|+++|++++++ ++++|++++ ++|...|+++|
T Consensus 71 -----~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i 141 (394)
T 1o69_A 71 -----QDDIVLASSFTFIASVAPICYLKAKPVFIDCDE-TYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEI 141 (394)
T ss_dssp -----TTCEEEEESSSCGGGTHHHHHTTCEEEEECBCT-TSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHH
T ss_pred -----CCCEEEECCCccHHHHHHHHHcCCEEEEEEeCC-CCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHH
Confidence 125899999999999999999999999999985 478999999999987 688888775 78999999999
Q ss_pred HHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCccccccccc
Q 011057 225 NDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHI 304 (494)
Q Consensus 225 ~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~ 304 (494)
.++|+++ |+++++|+||+.+... ..... .....+|+++++.||.+ +|.++|+++++++..+........
T Consensus 142 ~~l~~~~------~~~li~Dea~~~g~~~-~~~~~---~~~~~~~~~s~s~~K~l-~~~~~G~~~~~~~~l~~~l~~~~~ 210 (394)
T 1o69_A 142 VEICKEN------DIVLIEDAAEALGSFY-KNKAL---GTFGEFGVYSYNGNKII-TTSGGGMLIGKNKEKIEKARFYST 210 (394)
T ss_dssp HHHHHHT------TCEEEEECTTCTTCEE-TTEET---TSSSSEEEEECCTTSSS-CCSSCEEEEESCHHHHHHHHHHTB
T ss_pred HHHHHHc------CCEEEEECcCccccee-CCccc---ccccCcEEEEEeCCccC-CCCCceEEEECCHHHHHHHHHHHH
Confidence 9999999 9999999999854321 11100 01235899999999976 567899998865433211111111
Q ss_pred CCCCC-CCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCC----CccEEEEE
Q 011057 305 NYLGA-DQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDE----GVPLVAFS 379 (494)
Q Consensus 305 ~y~~~-~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~----~~~~v~f~ 379 (494)
.+... ........+.+.....+....++.. .+.+++..++..++++++.+.|+++ +++..+.. ...++++.
T Consensus 211 ~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~--l~~l~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~i~ 286 (394)
T 1o69_A 211 QARENCLHYEHLDYGYNYRLSNVLGAIGVAQ--MEVLEQRVLKKREIYEWYKEFLGEY--FSFLDELENSRSNRWLSTAL 286 (394)
T ss_dssp TCCCSSSSCCCSSCCCBCBCCHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHTTT--EECCCCCTTEECCCSSEEEE
T ss_pred hccccCccccccccCcccCcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccc--ccccCCCCCCcceeEEEEEE
Confidence 11000 0000000011111112222222222 2335667888899999999999887 66554321 22357777
Q ss_pred ecCCC-------------------CCCHHHHHHHHHhcCceeeccccCC----CCCC-------------ceEEEEEecc
Q 011057 380 LKDNK-------------------RHDEFEVAELLRRFGWIVPAYTMPA----DAQH-------------ITVLRVVIRE 423 (494)
Q Consensus 380 ~~~~~-------------------~~~~~~l~~~L~~~Gi~v~~~~~~~----~~~~-------------~~~lRvs~~~ 423 (494)
++... +.+..++.+.|.++||.++....|. .... ...+|+..+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (394)
T 1o69_A 287 INFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGT 366 (394)
T ss_dssp ESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCT
T ss_pred ecchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCC
Confidence 75310 2357789999999999986543220 1111 0235555588
Q ss_pred CCChHHHHHHHHHHHHHHH
Q 011057 424 DFSRTLAERLVLDITKVLH 442 (494)
Q Consensus 424 ~~t~~~id~~i~~l~~~~~ 442 (494)
.+|.+|++++++.|+++++
T Consensus 367 ~~t~edi~~~~~~l~~~~~ 385 (394)
T 1o69_A 367 AMSKDDVYEISKLILKSIK 385 (394)
T ss_dssp TCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 8999999999998887654
No 128
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.93 E-value=5.5e-23 Score=209.22 Aligned_cols=322 Identities=12% Similarity=0.003 Sum_probs=218.6
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhCCCCCCC----CCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCC
Q 011057 86 DMDEYPVTTELQNRCVNIIARLFNAPLEDS----ETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGA 161 (494)
Q Consensus 86 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~----~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~ 161 (494)
.|....+..++++.+.+++++.+|.+.+.. +...+++|+|+++|+.+++.++... +++|+++.
T Consensus 73 ~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~-------------gd~Vlv~~ 139 (425)
T 2r2n_A 73 QYSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINP-------------GDNVLLDE 139 (425)
T ss_dssp SCCCTTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCT-------------TCEEEEES
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCC-------------CCEEEEeC
Confidence 345556778899999999999999864210 0135899999999999888887321 26899999
Q ss_pred CcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhh------------hCCeEEEE-eeCCCCcccccCHH---HHH
Q 011057 162 NVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVD------------ENTICVAA-ILGSTLNGEFEDVK---LLN 225 (494)
Q Consensus 162 ~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~------------~~t~~vv~-~~~~~~tG~~~~l~---~I~ 225 (494)
++|..+...++..|++++.++++++ .+|+++|+++++ +++++|++ .+++||||.+.+.+ +|+
T Consensus 140 p~y~~~~~~~~~~g~~~~~v~~~~~--~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~ 217 (425)
T 2r2n_A 140 PAYSGTLQSLHPLGCNIINVASDES--GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIY 217 (425)
T ss_dssp SCCHHHHHHHGGGTCEEEEECEETT--EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHH
T ss_pred CCcHHHHHHHHHcCCEEEEeCcCCC--CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHH
Confidence 9999999999999999999998764 489999999987 35777766 58899999998755 899
Q ss_pred HHHHHhhcccCCCceEEEecccccccccccCCcc-c-ccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccccc
Q 011057 226 DLLAEKNKETGWDTPIHVDAASGGFIAPFLYPEL-E-WDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFH 303 (494)
Q Consensus 226 ~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~-~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~ 303 (494)
++|+++ ++++++|++|+.+.. ..... . ..+...+.+++..+++|++.++.++|+++++++ .+ ..+...
T Consensus 218 ~~a~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~-l~-~~l~~~ 287 (425)
T 2r2n_A 218 ELARKY------DFLIIEDDPYYFLQF--NKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKP-LI-ERVILH 287 (425)
T ss_dssp HHHHHT------TCEEEEECTTGGGBS--SSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHH-HH-HHHHHH
T ss_pred HHHHHc------CCEEEEECCcccccC--CCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCHH-HH-HHHHHH
Confidence 999999 999999999986532 11100 0 112222456778899999875667899987653 22 211111
Q ss_pred cCCCCCCCCCcccccCcchHHHHHHHHHHHHhcH----hHHHHHHHHHHHHHHHHHHHHhh-CCCeEEeecCCCccEEEE
Q 011057 304 INYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGF----EGYRNVMENCHENAMVLKEGLEK-TGRFNIVSKDEGVPLVAF 378 (494)
Q Consensus 304 ~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~----~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~~~~~v~f 378 (494)
.... .++.+.....++..+++.++. +.+++..+++.++++++.+.|++ ++++..+..+....++.+
T Consensus 288 ~~~~---------~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~ 358 (425)
T 2r2n_A 288 IQVS---------TLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWI 358 (425)
T ss_dssp HHTT---------TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEE
T ss_pred HHHh---------cCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEE
Confidence 0000 012222333333444443322 23455666777888899999988 555643333324556777
Q ss_pred EecCCCCCCHHH-HHHHHHhcCceeeccccCCCC--CCceEEEEEeccCCChHHHHHHHHHHHHHHHHH
Q 011057 379 SLKDNKRHDEFE-VAELLRRFGWIVPAYTMPADA--QHITVLRVVIREDFSRTLAERLVLDITKVLHEL 444 (494)
Q Consensus 379 ~~~~~~~~~~~~-l~~~L~~~Gi~v~~~~~~~~~--~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l 444 (494)
.++. ..+..+ +.+.|.++|+.+......... .+..++|++++. .++++++++++.|+++++++
T Consensus 359 ~~~~--~~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~~ 424 (425)
T 2r2n_A 359 KVKG--INDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKES 424 (425)
T ss_dssp EETT--CSCCHHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHHH
T ss_pred EeCC--CCCHHHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHh
Confidence 7743 234445 688899999998543322111 234689999873 58999999999998887653
No 129
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.93 E-value=7.5e-24 Score=209.80 Aligned_cols=323 Identities=13% Similarity=0.071 Sum_probs=217.5
Q ss_pred cCCCCCcccccccC-CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHH
Q 011057 53 DGNPRLNLASFVTT-WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIM 131 (494)
Q Consensus 53 ~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~ 131 (494)
+++..++|....+. +++|.+.+++.+.+.. ...|....+ . ++++++++++|.++ ..+++|+|+++++.
T Consensus 13 ~g~~~id~~~~~~~~~~~~~v~~a~~~~~~~-~~~y~~~~~-~----~lr~~la~~~~~~~-----~~i~~t~g~~~al~ 81 (350)
T 3fkd_A 13 LSSEIVNFSTTVWTDGDKDHLEKHLVENLNC-IRHYPEPDA-G----TLRQMLAKRNSVDN-----NAILVTNGPTAAFY 81 (350)
T ss_dssp ---CCEECSCCSCCCSCCHHHHHHHHHTGGG-GGSCCCTTC-H----HHHHHHHHHTTCCG-----GGEEEESHHHHHHH
T ss_pred ccccEEEccCCCCCCCCCHHHHHHHHHhHhH-HhcCCCCcH-H----HHHHHHHHHhCcCH-----HHEEEcCCHHHHHH
Confidence 34455555555433 4567888888887733 222322222 2 46777999999865 45999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEec-cCCccccCHHHHHHhhhhCCeEEEEee
Q 011057 132 LAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKL-SEGYYVMDPVKAVEMVDENTICVAAIL 210 (494)
Q Consensus 132 ~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~-~~~~~~~d~~~L~~~i~~~t~~vv~~~ 210 (494)
+++.++. +++|+++.++|..+...++..|++++.+++ +++ ..+++ +++++|++++
T Consensus 82 ~~~~~l~---------------gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~--------~~~~~v~i~~ 137 (350)
T 3fkd_A 82 QIAQAFR---------------GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDI-GEADF--------SNMDFCWLCN 137 (350)
T ss_dssp HHHHHTT---------------TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSCG-GGSCC--------TTCSEEEEES
T ss_pred HHHHHHC---------------CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCcc-ccCcc--------CCCCEEEEeC
Confidence 8887763 268999999999999999999999999999 653 23444 5788999999
Q ss_pred CCCCcccccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCC-cCCceEEEE
Q 011057 211 GSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGL-VYAGIGWVI 289 (494)
Q Consensus 211 ~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~G~~~ 289 (494)
++||||.+.|+++|.++++.+. ..++++|++|+.+.. ........+.....+++..+++|++. ++.++|+++
T Consensus 138 p~nptG~~~~~~~l~~l~~~~~-----~~~li~Dea~~~~~~--~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~ 210 (350)
T 3fkd_A 138 PNNPDGRLLQRTEILRLLNDHP-----DTTFVLDQSYVSFTT--EEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIV 210 (350)
T ss_dssp SCTTTCCCCCHHHHHHHHHHCT-----TSEEEEECTTTTSCS--SCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEE
T ss_pred CCCCcCCCCCHHHHHHHHHhCC-----CCEEEEECchhhhcc--CcchhhHHhhcCCCEEEEecCchhccCcchheEeEE
Confidence 9999999999999999999982 279999999987532 11111112223345677889999886 667889988
Q ss_pred EeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhH-HHHHHHHHHHHHHHHHHHHhhCCCeEEee
Q 011057 290 WRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEG-YRNVMENCHENAMVLKEGLEKTGRFNIVS 368 (494)
Q Consensus 290 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g-~~~~~~~~~~~a~~l~~~L~~~~~~~~~~ 368 (494)
+ ++... +.+..... . ++.+ .+.++++...+.... +.+..++..++++++.+.|++++++++..
T Consensus 211 ~-~~~~~-~~~~~~~~-------~----~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 274 (350)
T 3fkd_A 211 A-NKDFM-KRVAAFST-------P----WAVN---ALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGVEVHP 274 (350)
T ss_dssp C-CHHHH-HHHHTTCC-------T----TCSC---HHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTEEECC
T ss_pred e-CHHHH-HHHHHhCC-------C----CCCC---HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEECC
Confidence 7 33222 21111100 0 1122 233333333332221 33334444588899999999997788753
Q ss_pred cCCCccEEEEEecCCCCCCHHHHHHHHHh-cCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHH
Q 011057 369 KDEGVPLVAFSLKDNKRHDEFEVAELLRR-FGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLH 442 (494)
Q Consensus 369 ~~~~~~~v~f~~~~~~~~~~~~l~~~L~~-~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~ 442 (494)
+ ..+++.+.++.. +..++.++|.+ +|+.+....... ..+..++|++++ +.+++++++++|+++++
T Consensus 275 ~--~~~~~~~~~~~~---~~~~l~~~L~~~~gi~v~~g~~f~-~~~~~~iRis~~---~~~~~~~l~~al~~~~~ 340 (350)
T 3fkd_A 275 S--GTTFFLLRLKKG---TAAELKKYMLEEYNMLIRDASNFR-GLDESYVRITTQ---RPAQNQLFIKALETFLE 340 (350)
T ss_dssp C--SSSEEEEEESSS---CHHHHHHHHHHTTCEECEECTTST-TCCTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred C--CCcEEEEECCCC---CHHHHHHHHHHHCCEEEEeCccCC-CCCCCEEEEEcC---CHHHHHHHHHHHHHHHH
Confidence 3 467777787542 78899999999 999886543222 233568999987 77888888877776654
No 130
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.93 E-value=6.1e-24 Score=216.43 Aligned_cols=343 Identities=10% Similarity=0.020 Sum_probs=225.9
Q ss_pred cccccccCCChHHHHHHHHHHhc-----------ccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChh
Q 011057 59 NLASFVTTWMEPECDKLMMAAIN-----------KNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSS 127 (494)
Q Consensus 59 ~~~~~~~~~~~p~~~~~~~~~~~-----------~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt 127 (494)
.|.+...+.+++.+.+++..... .....|....+..++++.+.+++.+.+|.+... +...+++|+|++
T Consensus 40 ~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~-~~~~i~~~~G~~ 118 (428)
T 1iay_A 40 QMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRF-DPERVVMAGGAT 118 (428)
T ss_dssp ECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCC-CTTSCEEEEHHH
T ss_pred eeccccchhhHHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCC-ChhhEEEccChH
Confidence 34443333445667777764321 011223333357788888888888777743100 113588999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHH-HHcCCeeEEEeccC-CccccCHHHHHHhhhh----
Q 011057 128 EAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFA-RYFEVELKEVKLSE-GYYVMDPVKAVEMVDE---- 201 (494)
Q Consensus 128 ~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~-~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~---- 201 (494)
+++.+++.++..+ +++|+++.++|..+...+ ...|++++.+++++ +++.+|+++|++++++
T Consensus 119 ~ai~~~~~~~~~~-------------gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~ 185 (428)
T 1iay_A 119 GANETIIFCLADP-------------GDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKS 185 (428)
T ss_dssp HHHHHHHHHHCCT-------------TCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCC-------------CCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhc
Confidence 9999888877321 258999999998887644 46799999999864 3467999999999874
Q ss_pred --CCeEEEEeeCCCCcccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcc-c-ccccCC------Cc
Q 011057 202 --NTICVAAILGSTLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPEL-E-WDFRLP------LV 268 (494)
Q Consensus 202 --~t~~vv~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~-~~~~~~------~~ 268 (494)
++++|++++++||||.+.| +++|.++|+++ ++++++|++|+++.. ..... . ..+... +.
T Consensus 186 ~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~Dea~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 257 (428)
T 1iay_A 186 NIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQH------NIHLVCDEIYAATVF--DTPQFVSIAEILDEQEMTYCNK 257 (428)
T ss_dssp TCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTT------TCEEEEECTTGGGCC--SSSCCCCHHHHHTSGGGTTSCT
T ss_pred CCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHC------CeEEEEecccccccc--CCCCccCHHHhccccccccCCC
Confidence 5788999999999999998 99999999999 999999999987532 11111 0 011111 14
Q ss_pred e--EEEEcCcccCC-cCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcH-----hHH
Q 011057 269 K--SINVSGHKYGL-VYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGF-----EGY 340 (494)
Q Consensus 269 D--~~~~~~hK~l~-~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~-----~g~ 340 (494)
| ++..++||+++ ++.++|++++.++..+ ..+.....+ ++. +.+++.++...+.. +.+
T Consensus 258 d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~-~~~~~~~~~-----------~~~---~~~~~~a~~~~l~~~~~~~~~~ 322 (428)
T 1iay_A 258 DLVHIVYSLSKDMGLPGFRVGIIYSFNDDVV-NCARKMSSF-----------GLV---STQTQYFLAAMLSDEKFVDNFL 322 (428)
T ss_dssp TSEEEEEESTTTSSCGGGCEEEEEESCHHHH-HHHHHHHTT-----------SCC---CHHHHHHHHHHTTCHHHHHHHH
T ss_pred CcEEEEecchhhcCCCCceEEEEEeCCHHHH-HHHHHHHhc-----------ccC---CHHHHHHHHHHhcChHHHHHHH
Confidence 5 67789999885 5667899987544322 211111011 111 12233344444432 245
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccEEEEEecCCC---C-CCHHHHHHHHHhc-CceeeccccCCCCCCce
Q 011057 341 RNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNK---R-HDEFEVAELLRRF-GWIVPAYTMPADAQHIT 415 (494)
Q Consensus 341 ~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~---~-~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~ 415 (494)
++..++..++++++.+.|++++ +++..+. ...++.+.+.... . .+..++.++|.++ |+.+........ .+..
T Consensus 323 ~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~-~~~~ 399 (428)
T 1iay_A 323 RESAMRLGKRHKHFTNGLEVVG-IKCLKNN-AGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFEC-QEPG 399 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-CCBCCCS-SSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC-SSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-CcccCCC-eeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCC-CCCC
Confidence 6777888899999999999984 7765432 4556777774310 0 1245788999886 999865432211 1245
Q ss_pred EEEEEeccCCChHHHHHHHHHHHHHHH
Q 011057 416 VLRVVIREDFSRTLAERLVLDITKVLH 442 (494)
Q Consensus 416 ~lRvs~~~~~t~~~id~~i~~l~~~~~ 442 (494)
++|++++ .+++++++++++.|+++++
T Consensus 400 ~iRis~~-~~~~e~i~~~~~~l~~~l~ 425 (428)
T 1iay_A 400 WFRVCFA-NMDDGTVDIALARIRRFVG 425 (428)
T ss_dssp EEEEECS-SSCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEe-cCCHHHHHHHHHHHHHHHh
Confidence 7999998 5799999999999988765
No 131
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.92 E-value=2.8e-24 Score=219.09 Aligned_cols=342 Identities=12% Similarity=0.014 Sum_probs=226.8
Q ss_pred CCccccccc-CC-ChHHH--HHHHHHHhcc-cCCCCCCChhhHHHHHHHHHHHHHHh-CCCCCCCCCcc---eeeecChh
Q 011057 57 RLNLASFVT-TW-MEPEC--DKLMMAAINK-NYVDMDEYPVTTELQNRCVNIIARLF-NAPLEDSETAV---GVGTVGSS 127 (494)
Q Consensus 57 ~~~~~~~~~-~~-~~p~~--~~~~~~~~~~-~~~~~~~~~~~~~le~~~~~~la~l~-g~~~~~~~~~~---~~~t~ggt 127 (494)
.++|+.+.+ .. .+|.+ .+++.+.+.. ....|....+..++++.+.+++.+.. +.++ .. +++|+|++
T Consensus 49 ~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~-----~~~~~i~~t~g~~ 123 (430)
T 2x5f_A 49 TYNATIGMATNKDGKMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSI-----DNMSRPIVTNALT 123 (430)
T ss_dssp SEECCCSSCEETTEECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHCTTCCG-----GGBCCCEEESHHH
T ss_pred cEEeeeeeccCCCCchhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccCcccCC-----CccceEEEcCCch
Confidence 445555544 22 23434 4554444443 23344444467777777666665542 4432 35 89999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHH-cCCeeEEEeccCCccccCHHHHHHhhhh---CC
Q 011057 128 EAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARY-FEVELKEVKLSEGYYVMDPVKAVEMVDE---NT 203 (494)
Q Consensus 128 ~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~-~G~~v~~v~~~~~~~~~d~~~L~~~i~~---~t 203 (494)
+|+.+++.++..+ +++|+++.++|..+...++. .|++++.++++++++.+|+++|++++++ ++
T Consensus 124 ~al~~~~~~l~~~-------------gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~ 190 (430)
T 2x5f_A 124 HGLSLVGDLFVNQ-------------DDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDK 190 (430)
T ss_dssp HHHHHHHHHHCCT-------------TCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHCCSSE
T ss_pred HHHHHHHHHHhCC-------------CCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhcCCCC
Confidence 9999888877321 26899999999999999999 9999999998763367999999999987 78
Q ss_pred eEEEEeeCCCCcccccC---HHHHHHHHHH-----hhcccCCCceEEEecccccccccccCCc-cc-c-cc-cCCCc---
Q 011057 204 ICVAAILGSTLNGEFED---VKLLNDLLAE-----KNKETGWDTPIHVDAASGGFIAPFLYPE-LE-W-DF-RLPLV--- 268 (494)
Q Consensus 204 ~~vv~~~~~~~tG~~~~---l~~I~~la~~-----~~~~~~~~~~l~vD~a~~~~~~~~~~~~-~~-~-~~-~~~~~--- 268 (494)
++|++++|+||||.+.| +++|.++|++ + ++++++|++|+.+.. .... .. . .+ .....
T Consensus 191 ~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~------~~~li~De~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 262 (430)
T 2x5f_A 191 VIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGT------KVIAVVDDAYYGLFY--EDVYTQSLFTALTNLHSNAIL 262 (430)
T ss_dssp EEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTC------EEEEEEECTTTTCBC--SSSCCSCHHHHHHTTCCTTEE
T ss_pred EEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccC------CEEEEEehhcccccC--CcccchHHHHHHhhccCCcce
Confidence 89999999999999988 8899999999 9 999999999987642 1110 01 1 22 11234
Q ss_pred eEEEEcCcccCC-cCCceEEEEEe--CCCCcccccccccCC-CCCCCCCcccccCcchHHHHHHHHHHH-Hhc-HhHHHH
Q 011057 269 KSINVSGHKYGL-VYAGIGWVIWR--NKEDLPEELIFHINY-LGADQPTFTLNFSKGSSQVIAQYYQLI-RLG-FEGYRN 342 (494)
Q Consensus 269 D~~~~~~hK~l~-~p~g~G~~~~~--~~~~~~~~~~~~~~y-~~~~~~~~~~~~s~~~~~~~a~~~al~-~l~-~~g~~~ 342 (494)
+++..+++|+++ ++.++|++++. ++... +.+...... ... ..++.+.....++..+++ ... .+.+++
T Consensus 263 ~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~-~~l~~~~~~~~~~------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 335 (430)
T 2x5f_A 263 PIRLDGATKEFFAWGFRVGFMTFGTSDQTTK-EVLEAKVKGLIRS------NISSGPLPTQSAVKHVLKNNKQFDKEIEQ 335 (430)
T ss_dssp EEEEEEHHHHTTCGGGCCEEEEEBCCCHHHH-HHHHHHHHHHHHT------TTSSCCHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred EEEEEecccCCCCCCCCeEEEEEecCCHHHH-HHHHHHHhhhhhc------ccCCCChHHHHHHHHHHccChHHHHHHHH
Confidence 667889999985 55668999882 22222 211110000 000 001222223333333333 110 122334
Q ss_pred HHHHHHHHHHHHHHHHh----hCCCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHh-cCceeeccccCCCCCCceEE
Q 011057 343 VMENCHENAMVLKEGLE----KTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRR-FGWIVPAYTMPADAQHITVL 417 (494)
Q Consensus 343 ~~~~~~~~a~~l~~~L~----~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~-~Gi~v~~~~~~~~~~~~~~l 417 (494)
..++..++++++.+.|+ +.+ +++..+. ...++.+.++ +.+..++.++|.+ +|+.+... +..++
T Consensus 336 ~~~~~~~~~~~l~~~L~~~~~~~g-~~~~~~~-~g~~~~~~~~---~~~~~~~~~~l~~~~gi~v~~g-------~~~~i 403 (430)
T 2x5f_A 336 NIQTLKERYEVTKEVVYADQYHSH-WQAYDFN-SGYFMAIKVH---DVDPEALRKHLIDKYSIGVIAL-------NATDI 403 (430)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGTTT-EEECCCC-BSSEEEEEES---SSCHHHHHHHHHHHHCEECEEC-------SSSEE
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCC-ceeeCCC-ceEEEEeCCC---CCCHHHHHHHHHHhCCEEEecC-------CCCeE
Confidence 77778888999999998 554 7776442 2234667774 3578899999998 99987542 24579
Q ss_pred EEEeccCCChHHHHHHHHHHHHHHHHH
Q 011057 418 RVVIREDFSRTLAERLVLDITKVLHEL 444 (494)
Q Consensus 418 Rvs~~~~~t~~~id~~i~~l~~~~~~l 444 (494)
|++++. .++++++++++.|+++++++
T Consensus 404 Ris~~~-~~~e~i~~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 404 RIAFSC-VEKDDIPHVFDSIAKAIDDL 429 (430)
T ss_dssp EEEGGG-SCGGGHHHHHHHHHHHHHHH
T ss_pred EEEEec-CCHHHHHHHHHHHHHHHHhc
Confidence 999985 48899999999999988765
No 132
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.92 E-value=1e-23 Score=213.32 Aligned_cols=345 Identities=9% Similarity=0.020 Sum_probs=231.3
Q ss_pred CCCcccccccC-CChHHHHHHHHHHhccc-CCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHH
Q 011057 56 PRLNLASFVTT-WMEPECDKLMMAAINKN-YVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLA 133 (494)
Q Consensus 56 ~~~~~~~~~~~-~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a 133 (494)
..++|+.+.+. +++|.+.+++.+.+... ...|....+..++++.+.+++.+.+|.+.+. ...+++|+|+++|+..+
T Consensus 24 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~--~~~i~~~~g~~~a~~~~ 101 (410)
T 3e2y_A 24 SVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDP--NEEILVAVGAYGSLFNS 101 (410)
T ss_dssp TSEECSSCCCCSCCCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCT--TTSEEEESHHHHHHHHH
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCC--CCCEEEeCCcHHHHHHH
Confidence 33556665554 34678999998888653 2244444567889999999999888876421 13589999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccC----------CccccCHHHHHHhhhhCC
Q 011057 134 GLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSE----------GYYVMDPVKAVEMVDENT 203 (494)
Q Consensus 134 ~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~----------~~~~~d~~~L~~~i~~~t 203 (494)
+.++... +++|+++.++|..+...++..|.+++.++++. +++.+|+++|++++++++
T Consensus 102 ~~~~~~~-------------gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~~ 168 (410)
T 3e2y_A 102 IQGLVDP-------------GDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKT 168 (410)
T ss_dssp HHHHCCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTTE
T ss_pred HHHhcCC-------------CCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCCCc
Confidence 8877321 25799999999999999999999999998862 346799999999998889
Q ss_pred eEEEEeeCCCCcccc---cCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcc--cccc-cCCCceEEEEcCcc
Q 011057 204 ICVAAILGSTLNGEF---EDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPEL--EWDF-RLPLVKSINVSGHK 277 (494)
Q Consensus 204 ~~vv~~~~~~~tG~~---~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~--~~~~-~~~~~D~~~~~~hK 277 (494)
++|++++++||||.+ +++++|+++|+++ |+++++|++|+.+.. ..... ...+ .....+++..+++|
T Consensus 169 ~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~S~sK 240 (410)
T 3e2y_A 169 KAIILNTPHNPLGKVYTRQELQVIADLCVKH------DTLCISDEVYEWLVY--TGHTHVKIATLPGMWERTITIGSAGK 240 (410)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBC--TTCCCCCGGGSTTCGGGEEEEEEHHH
T ss_pred eEEEEeCCCCCCCcCcCHHHHHHHHHHHHHc------CcEEEEEhhhhhccc--CCCCCCCHHHcCCccCeEEEEecchh
Confidence 999999999999999 5799999999999 999999999987542 11100 0011 11234577778899
Q ss_pred cCC-cCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHH------hcHhHHHHHHHHHHHH
Q 011057 278 YGL-VYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIR------LGFEGYRNVMENCHEN 350 (494)
Q Consensus 278 ~l~-~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~------l~~~g~~~~~~~~~~~ 350 (494)
++. ++.++|+++.+++ .+ ..+....... .++.+.....++..+++. ...+.+++..++..++
T Consensus 241 ~~g~~G~r~G~~~~~~~-~~-~~~~~~~~~~---------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 309 (410)
T 3e2y_A 241 TFSVTGWKLGWSIGPAH-LI-KHLQTVQQNS---------FYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVK 309 (410)
T ss_dssp HSSCGGGCCEEEECCHH-HH-HHHHHHHHTT---------TCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHH
T ss_pred hcCCCCceEEEEEECHH-HH-HHHHHHHHhh---------ccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHH
Confidence 885 6678898876442 22 1111100000 012222333333444432 1244567888888999
Q ss_pred HHHHHHHHhhCCCeEEeecCCCccEEEEEecCC-CCCC--------HHHHHHHH-HhcCceeeccccCCCC----CCceE
Q 011057 351 AMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDN-KRHD--------EFEVAELL-RRFGWIVPAYTMPADA----QHITV 416 (494)
Q Consensus 351 a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~-~~~~--------~~~l~~~L-~~~Gi~v~~~~~~~~~----~~~~~ 416 (494)
++++.+.|++++ +++..+. ...++.+.+... ...+ ..++.++| .++|+.+......... .+..+
T Consensus 310 ~~~l~~~L~~~g-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~ 387 (410)
T 3e2y_A 310 RDRMVRLLNSVG-LKPIVPD-GGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKL 387 (410)
T ss_dssp HHHHHHHHHTTT-CEEEBCS-BSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTE
T ss_pred HHHHHHHHHHCC-CeecCCC-ccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCE
Confidence 999999999985 8876553 344555555321 1111 24677765 5679987543222110 13578
Q ss_pred EEEEeccCCChHHHHHHHHHHH
Q 011057 417 LRVVIREDFSRTLAERLVLDIT 438 (494)
Q Consensus 417 lRvs~~~~~t~~~id~~i~~l~ 438 (494)
+|+++.. ++++++++++.|+
T Consensus 388 iRis~~~--~~e~l~~~l~~l~ 407 (410)
T 3e2y_A 388 VRFCFIK--KDSTLDAAEEIFR 407 (410)
T ss_dssp EEEECCC--CHHHHHHHHHHHH
T ss_pred EEEEEcC--CHHHHHHHHHHHH
Confidence 9999874 7777776666554
No 133
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.92 E-value=3.1e-23 Score=210.16 Aligned_cols=295 Identities=17% Similarity=0.094 Sum_probs=201.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHH----
Q 011057 95 ELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKF---- 170 (494)
Q Consensus 95 ~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~---- 170 (494)
...+++++++++++|.+. +++|+||++|+..++.++.. .+++|+++.+.|.+....
T Consensus 56 ~~~~~l~~~la~~~g~~~-------~~~~~~gt~a~~~al~~l~~-------------~gd~vi~~~~~~~~~~~~~~~~ 115 (412)
T 2cb1_A 56 PTAKALEERLKALEGALE-------AVVLASGQAATFAALLALLR-------------PGDEVVAAKGLFGQTIGLFGQV 115 (412)
T ss_dssp HHHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHTTCC-------------TTCEEEEETTCCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCCCc-------EEEECCHHHHHHHHHHHHhC-------------CCCEEEEeCCCchhHHHHHHHH
Confidence 344567788999999863 89999999999988877622 125899999999876654
Q ss_pred HHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEEEecccccc
Q 011057 171 ARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGF 250 (494)
Q Consensus 171 ~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~ 250 (494)
++..|++++.+++ |+++|++++++++++|++++++|++|.+.|+++|.++|+++ |+++|+|++|+.+
T Consensus 116 ~~~~g~~~~~~~~-------~~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~------~~~li~D~~~~~~ 182 (412)
T 2cb1_A 116 LSLMGVTVRYVDP-------EPEAVREALSAKTRAVFVETVANPALLVPDLEALATLAEEA------GVALVVDNTFGAA 182 (412)
T ss_dssp TTTTTCEEEEECS-------SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHH------TCEEEEECGGGTT
T ss_pred HHHcCCEEEEECC-------CHHHHHHHhccCCeEEEEeCCCCCCcccccHHHHHHHHHHc------CCEEEEECCCccc
Confidence 3457888888874 38999999999999999999999999999999999999999 9999999999876
Q ss_pred cccccCCcccccccCCCceEEEEcCcccCCcCCc-eEEEEEeCCCCccc-ccccccCCCCCC---------C-----CCc
Q 011057 251 IAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAG-IGWVIWRNKEDLPE-ELIFHINYLGAD---------Q-----PTF 314 (494)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g-~G~~~~~~~~~~~~-~~~~~~~y~~~~---------~-----~~~ 314 (494)
... ..+ . . .++|+++.++||++.+|.+ +|++++.++..... .....+....+. . ...
T Consensus 183 ~~~-~~~-~--~---~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~ 255 (412)
T 2cb1_A 183 GAL-CRP-L--A---WGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTL 255 (412)
T ss_dssp TTS-CCG-G--G---GTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHH
T ss_pred ccc-CCc-c--c---cCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHH
Confidence 211 111 1 1 2689999999999987765 78888776432100 000000000000 0 000
Q ss_pred c--cccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEee-cC---------------CCccEE
Q 011057 315 T--LNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVS-KD---------------EGVPLV 376 (494)
Q Consensus 315 ~--~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~-~~---------------~~~~~v 376 (494)
. ..+. .......+..+..+ +.+.++.++..++++++.+.|.+.++++++. +. ...+++
T Consensus 256 ~~~~~g~--~~~~~~a~~~~~~l--~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv 331 (412)
T 2cb1_A 256 GLSLCGM--ALSPFNAYLLFQGL--ETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPIL 331 (412)
T ss_dssp HTTTTCC--CCCHHHHHHHHHHG--GGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEE
T ss_pred HHHhcCC--CCChHHhHHHHcCC--chHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEE
Confidence 0 0011 01122233333322 3345667777889999999999998888553 21 135689
Q ss_pred EEEecCCCCCCHHHHHHHHHhcCceeeccc---------cCCCCC--------------CceEEEEEeccCCChHHHHHH
Q 011057 377 AFSLKDNKRHDEFEVAELLRRFGWIVPAYT---------MPADAQ--------------HITVLRVVIREDFSRTLAERL 433 (494)
Q Consensus 377 ~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~---------~~~~~~--------------~~~~lRvs~~~~~t~~~id~~ 433 (494)
+|.+ + +.+.+.+.|.+.|+.+ +.. .|.... ....+|+|++..++.+++++|
T Consensus 332 ~~~~-~----~~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l 405 (412)
T 2cb1_A 332 TLDL-G----DLERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALF 405 (412)
T ss_dssp EEEC-S----SHHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHH
T ss_pred EEEe-C----CHHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHH
Confidence 9998 4 5677888888899987 441 221110 146899999999998888888
Q ss_pred HHHHHH
Q 011057 434 VLDITK 439 (494)
Q Consensus 434 i~~l~~ 439 (494)
+++|++
T Consensus 406 ~~al~~ 411 (412)
T 2cb1_A 406 EEALEA 411 (412)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 777753
No 134
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.92 E-value=6.5e-24 Score=226.97 Aligned_cols=309 Identities=12% Similarity=0.013 Sum_probs=221.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHH-HHHcC
Q 011057 97 QNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKF-ARYFE 175 (494)
Q Consensus 97 e~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~-~~~~G 175 (494)
..++++.+|+++|.+. ..++++|+++||..++.++..+ +++|+++.+.|.++..+ +.+.|
T Consensus 175 i~e~e~~lA~~~gae~------~i~v~nGtt~an~~ai~al~~p-------------GD~VLv~~~~H~S~~~~~~~l~G 235 (730)
T 1c4k_A 175 AVAAEKHAARVYNADK------TYFVLGGSSNANNTVTSALVSN-------------GDLVLFDRNNHKSVYNSALAMAG 235 (730)
T ss_dssp HHHHHHHHHHHTTCSE------EEEESSHHHHHHHHHHHHHCCT-------------TCEEEEETTCCHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHCCCc------EEEECCHHHHHHHHHHHHhcCC-------------CCEEEEcCCchHHHHHHHHHHCC
Confidence 4467788999999974 3667777889999888776321 36899999999999888 88899
Q ss_pred CeeEEEeccCCc----cccCHHHH-----HHhhhhC------C----eEEEEeeCCCCcccccCHHHHHHHHHHhhcccC
Q 011057 176 VELKEVKLSEGY----YVMDPVKA-----VEMVDEN------T----ICVAAILGSTLNGEFEDVKLLNDLLAEKNKETG 236 (494)
Q Consensus 176 ~~v~~v~~~~~~----~~~d~~~L-----~~~i~~~------t----~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~ 236 (494)
++++.++.+.+. +.+|+++| ++++.++ + ++|+++++| ++|.+.|+++|+++|+++
T Consensus 236 a~~v~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn-~~G~v~dl~~I~~la~~~----- 309 (730)
T 1c4k_A 236 GRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGT-YDGTIYNAHEVVKRIGHL----- 309 (730)
T ss_dssp CEEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBC-TTSEEECHHHHHHHHGGG-----
T ss_pred CEEEEEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCC-CCCeecCHHHHHHHHHHc-----
Confidence 999988765321 34788888 8888765 5 788888884 799999999999999999
Q ss_pred CCceEEEecccccccccccCCcc----cccccCCCce----EEEEcCcccCCcCCceEEEEEeCCCCcccccccccCCCC
Q 011057 237 WDTPIHVDAASGGFIAPFLYPEL----EWDFRLPLVK----SINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLG 308 (494)
Q Consensus 237 ~~~~l~vD~a~~~~~~~~~~~~~----~~~~~~~~~D----~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~ 308 (494)
++++|+|+||+.+.. | .+.. ..+....++| +++.++||++.++.+.|+++++++... . ...+..
T Consensus 310 -g~~livDeAh~~~~~-f-~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~-g----~~~~i~ 381 (730)
T 1c4k_A 310 -CDYIEFDSAWVGYEQ-F-IPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIK-G----QLRYCD 381 (730)
T ss_dssp -BSEEEEECTTCCGGG-S-SGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGT-T----STTCCC
T ss_pred -CCeEEEEcccccccc-c-CcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhc-C----cccccC
Confidence 999999999975421 1 1111 1122123567 999999999988888889988875321 0 000000
Q ss_pred CC----CCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhh-CCCeEEeecCC------------
Q 011057 309 AD----QPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK-TGRFNIVSKDE------------ 371 (494)
Q Consensus 309 ~~----~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~------------ 371 (494)
.. .......++.+...++++.++++.+..++..++.++..+++++++++|++ +++++++.+..
T Consensus 382 ~~~~~~~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~ 461 (730)
T 1c4k_A 382 HKHFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTE 461 (730)
T ss_dssp HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHH
T ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccc
Confidence 00 00001123444555666777787777644467788999999999999998 77798865421
Q ss_pred -------------------------C-ccE----EEEEecC---------CCCCCHHHHHHHHHhcCceeeccccCCCCC
Q 011057 372 -------------------------G-VPL----VAFSLKD---------NKRHDEFEVAELLRRFGWIVPAYTMPADAQ 412 (494)
Q Consensus 372 -------------------------~-~~~----v~f~~~~---------~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~ 412 (494)
. ..+ ++|..++ ..+++...+.+.|.++||.+...
T Consensus 462 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~------- 534 (730)
T 1c4k_A 462 DMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKS------- 534 (730)
T ss_dssp HHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEE-------
T ss_pred cccccchhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEEC-------
Confidence 0 011 5566531 12567889999999999976321
Q ss_pred CceEEEEEeccCCChHHHHHHHHHHHHHHHHHh
Q 011057 413 HITVLRVVIREDFSRTLAERLVLDITKVLHELD 445 (494)
Q Consensus 413 ~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~ 445 (494)
+...+|++++..+|++++++|+++|+++.+.+.
T Consensus 535 ~~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~~~~ 567 (730)
T 1c4k_A 535 DLNSILFLMTPAETPAKMNNLITQLLQLQRLIE 567 (730)
T ss_dssp CSSEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 345689999999999999999999999988775
No 135
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.92 E-value=4.9e-23 Score=207.19 Aligned_cols=319 Identities=13% Similarity=0.002 Sum_probs=210.8
Q ss_pred ChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 011057 68 MEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA 147 (494)
Q Consensus 68 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~ 147 (494)
.+|.+.+++.+.+.........+ ......++++++++++|.+ .+++|+||++|+..++.+++..+...
T Consensus 53 ~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~g~~-------~v~~~~~gt~a~~~al~~~~~~~~~~--- 120 (392)
T 3ruy_A 53 RHPKIINALIDQANRVTLTSRAF--HSDQLGPWYEKVAKLTNKE-------MVLPMNTGAEAVETAIKTARRWAYDV--- 120 (392)
T ss_dssp TCHHHHHHHHHHHTTCSCCCTTS--EETTHHHHHHHHHHHHTCS-------EEEEESSHHHHHHHHHHHHHHHHHHT---
T ss_pred CCHHHHHHHHHHHHhcccccccc--CCHHHHHHHHHHHHhcCCC-------EEEEeCcHHHHHHHHHHHHHHhhhhc---
Confidence 46889999988886543322222 2334556788899999843 39999999999999998775532111
Q ss_pred cCCCCCCCeEEeCCCcchHHHHHHHHc-CC------------eeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCC
Q 011057 148 EGKPFDKPNIVTGANVQVCWEKFARYF-EV------------ELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTL 214 (494)
Q Consensus 148 ~g~~~~~~~vi~~~~~h~s~~~~~~~~-G~------------~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~ 214 (494)
.|.+..+++|++..++|......+... +. ++..++ ..|+++|++++++++++|+++.++|+
T Consensus 121 ~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~l~~~~~~v~~~~~~np 194 (392)
T 3ruy_A 121 KKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIP------YGDLEALKAAITPNTAAFILEPIQGE 194 (392)
T ss_dssp SCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEEC------TTCHHHHHHHCCTTEEEEEECSSBST
T ss_pred cCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeC------cccHHHHHHHhccCeEEEEEeCccCC
Confidence 122223457888777775433333222 21 133333 13899999999988999999999999
Q ss_pred cccccC----HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcC-CceEEEE
Q 011057 215 NGEFED----VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVY-AGIGWVI 289 (494)
Q Consensus 215 tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~G~~~ 289 (494)
||.+.| +++|.++|+++ |+++|+|++|+++.. .......+......|+++++ |++.++ .++|+++
T Consensus 195 tG~~~~~~~~l~~i~~l~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~d~~~~S--K~l~gG~~~~G~~~ 264 (392)
T 3ruy_A 195 AGINIPPAGFLKEALEVCKKE------NVLFVADEIQTGLGR--TGKVFACDWDNVTPDMYILG--KALGGGVFPISCAA 264 (392)
T ss_dssp TTSBCCCTTHHHHHHHHHHTT------TCEEEEECTTTTTTT--TSSSSGGGGGTCCCSEEEEC--GGGGTTTSCCEEEE
T ss_pred CCCccCCHHHHHHHHHHHHHc------CCEEEEeechhCCCc--cccchhhhccCCCCCEEEEc--hhhhCChhhhEEEE
Confidence 999998 99999999999 999999999975421 11111111111246777765 886554 5689888
Q ss_pred EeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCC--CeEEe
Q 011057 290 WRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTG--RFNIV 367 (494)
Q Consensus 290 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~--~~~~~ 367 (494)
+++. .. +.+. ... ...+ .+.+.....++.++++.+.. ++..++..++++++.+.|++++ .+...
T Consensus 265 ~~~~-~~-~~~~---~~~----~~~~--~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 330 (392)
T 3ruy_A 265 ANRD-IL-GVFE---PGS----HGST--FGGNPLACAVSIAALEVLEE---EKLTERSLQLGEKLVGQLKEIDNPMITEV 330 (392)
T ss_dssp ECHH-HH-TTCC---TTS----SCCS--STTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTTCCCTTEEEE
T ss_pred ECHH-HH-hhhc---cCC----cCCC--CCCCHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHhcCCCceEE
Confidence 7542 21 1110 000 0001 22333444555555554433 4677888899999999999874 23333
Q ss_pred ecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHH
Q 011057 368 SKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVL 441 (494)
Q Consensus 368 ~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~ 441 (494)
.+ ..+++.+.+.. +..++.++|.++|+.+.. .+..++|++++..+++++++++++.|++++
T Consensus 331 ~~--~g~~~~~~~~~----~~~~l~~~l~~~gi~v~~-------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 331 RG--KGLFIGIELNE----PARPYCEQLKAAGLLCKE-------THENVIRIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp EE--ETTEEEEEESS----CSHHHHHHHHTTTEECCC-------BTTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred Ee--eeeEEEEEEcc----hHHHHHHHHHHCCcEEec-------CCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 32 35678888743 567899999999998643 124679999888889999999999998875
No 136
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.92 E-value=8.8e-25 Score=223.50 Aligned_cols=292 Identities=10% Similarity=-0.032 Sum_probs=207.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcC
Q 011057 96 LQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFE 175 (494)
Q Consensus 96 le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G 175 (494)
...++++++++ +|.+. ..++|+|+|+|+.+++.++.. .+++|+++.++|.++..++...|
T Consensus 58 ~~~~~~~~la~-~g~~~------~v~~~~G~t~a~~~~~~a~~~-------------~gd~Vlv~~~~h~s~~~~~~~~G 117 (446)
T 2x3l_A 58 VILKSMKQVEK-HSDYD------GYFLVNGTTSGILSVIQSFSQ-------------KKGDILMARNVHKSVLHALDISQ 117 (446)
T ss_dssp HHHHHHHHHCS-CTTEE------EEEESSHHHHHHHHHHHTTTT-------------SSSCEEECTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHh-cCCCc------eEEEeCCHHHHHHHHHHHhcC-------------CCCEEEEecCccHHHHHHHHHcC
Confidence 44568888999 99852 478899999999988887732 13689999999999999999999
Q ss_pred CeeEEEec--cCCc---cccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEEEecccccc
Q 011057 176 VELKEVKL--SEGY---YVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGF 250 (494)
Q Consensus 176 ~~v~~v~~--~~~~---~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~ 250 (494)
++++.++. +++. +.+|+++| +.+++++|++++ .|++|.+.|+++|.++|+++ ++++|+|+||+.
T Consensus 118 ~~~~~v~~~~~~~~~~~~~~d~~~l---~~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~------~~~livDea~~~- 186 (446)
T 2x3l_A 118 QEGHFIETHQSPLTNHYNKVNLSRL---NNDGHKLVVLTY-PNYYGETFNVEEVIKSLHQL------NIPVLIDEAHGA- 186 (446)
T ss_dssp CCEEECEEEECTTTSSEEEEEC----------CCEEEEES-SCTTSCCCCHHHHHHHHHHT------TCCEEEECTTCT-
T ss_pred CeEEEEeCeeccccCcCCCCCHHHH---cCCCceEEEEEC-CCCCeEecCHHHHHHHHHhc------CCeEEEcchhhh-
Confidence 99999988 4321 46888888 566789999998 55699999999999999999 999999999987
Q ss_pred cccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHH
Q 011057 251 IAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYY 330 (494)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~ 330 (494)
...|... ..+....++|+++.++||+++++.|+|+++++++..-...+....... ..++.+....+++.+
T Consensus 187 ~~~f~~~--~~~~~~~g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~~~~~~--------~~~s~~~~~~aal~~ 256 (446)
T 2x3l_A 187 HFGLQGF--PDSTLNYQADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYLSYF--------QTSSPSYLIMASLES 256 (446)
T ss_dssp TTTSTTS--CCCGGGGTCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHHHHHHH--------SCSSCCHHHHHHHHH
T ss_pred hhccCCC--CCChHHcCCCEEEECCccccccccccEEEEEcCCcCCHHHHHHHHHHH--------cCCCchHHHHHHHHH
Confidence 2333221 112212258999999999998999999999876522101110000000 013444445556666
Q ss_pred HHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCC
Q 011057 331 QLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPAD 410 (494)
Q Consensus 331 al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~ 410 (494)
+++.+...+.++..++..++++++++. +++++.+. ....+.+.+. +.+..++.+.|.++|+.+.. +
T Consensus 257 a~~~l~~~g~~~~~~~~~~l~~~l~~~-----g~~~~~~~-~~~~l~i~~~---~~~~~~l~~~L~~~GI~v~~---~-- 322 (446)
T 2x3l_A 257 AAQFYKTYDSTLFFAKRAQLIECLENK-----GFEMLQVD-DPLKLLIKYE---GFTGHDIQNWFMNAHIYLEL---A-- 322 (446)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHH-----TCEEEECS-STTEEEEECT---TSCHHHHHHHHHHTTEEESE---E--
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHc-----CCEECcCC-CCeEEEEEeC---CcCHHHHHHHHHHCCCEEEe---c--
Confidence 777776656555777888888888877 48877653 2235667764 45788999999999998631 1
Q ss_pred CCCceEEEEEeccCCChHHHHHHHHHHHHHHHHHh
Q 011057 411 AQHITVLRVVIREDFSRTLAERLVLDITKVLHELD 445 (494)
Q Consensus 411 ~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~ 445 (494)
+...+|++++..+|.+++ ++++.|+++++.+.
T Consensus 323 --g~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~~ 354 (446)
T 2x3l_A 323 --DDYQALAILPLWHHDDTY-LFDSLLRKIEDMIL 354 (446)
T ss_dssp --CSSCEEEECCCCCTTCCC-CHHHHHHHHHTCCC
T ss_pred --CCCEEEEEeecCCCHHHH-HHHHHHHHHHHhhc
Confidence 224699999988899999 99999998876553
No 137
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.92 E-value=3.3e-24 Score=217.73 Aligned_cols=343 Identities=11% Similarity=-0.007 Sum_probs=225.5
Q ss_pred CCCCCccccccc------CCChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChh
Q 011057 54 GNPRLNLASFVT------TWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSS 127 (494)
Q Consensus 54 ~~~~~~~~~~~~------~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt 127 (494)
+...++|+.+.+ .++++.+.+++.+........|....+..++++.+.+++....+.+. ...+++|+||+
T Consensus 37 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~----~~~i~~t~g~~ 112 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEG----HIRSIATAGGT 112 (418)
T ss_dssp GGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSS----EEEEEEESHHH
T ss_pred CCCeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCccc----cccEEECCchH
Confidence 334456666543 23456777777655443334455566788888888888877666431 12599999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhh----CC
Q 011057 128 EAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDE----NT 203 (494)
Q Consensus 128 ~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~----~t 203 (494)
+|+..++.++..+ +++|+++.++|..+...++..|++++.++++++++.+|+++|++++++ ++
T Consensus 113 ~al~~~~~~l~~~-------------gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~ 179 (418)
T 3rq1_A 113 GGIHHLIHNYTEP-------------GDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQT 179 (418)
T ss_dssp HHHHHHHHHHSCT-------------TCEEEEESSCCTHHHHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhcCC-------------CCEEEECCCCchhHHHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCC
Confidence 9999888876321 268999999999999999999999999999654478999999999985 66
Q ss_pred e-EEEEeeC-CCCcccccCHHHHH---HHHH------HhhcccCCCceEEEecccccccccccCC---ccccccc-C-CC
Q 011057 204 I-CVAAILG-STLNGEFEDVKLLN---DLLA------EKNKETGWDTPIHVDAASGGFIAPFLYP---ELEWDFR-L-PL 267 (494)
Q Consensus 204 ~-~vv~~~~-~~~tG~~~~l~~I~---~la~------~~~~~~~~~~~l~vD~a~~~~~~~~~~~---~~~~~~~-~-~~ 267 (494)
+ +|+++++ +||||.+.|.+++. ++|+ ++ ++++++|++|.++.. ... ....... . +.
T Consensus 180 ~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~------~~~li~De~y~~~~~--~~~~~~~~~~~~~~~~~~ 251 (418)
T 3rq1_A 180 NVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRN------NVIIGIDVAYLDYSG--EKDEVRAFFNKFSHLPKE 251 (418)
T ss_dssp EEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSC------EEEEEEECTTGGGSS--CHHHHHGGGGGGTTCCTT
T ss_pred CEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCC------CeEEEEecccccccC--ChHHHHHHHHHHHhcCCC
Confidence 6 7778889 99999998766555 5555 77 999999999976532 100 0000111 1 11
Q ss_pred c-eEEEEcCcccCC-cCCceEEEEEe--CCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHh-----
Q 011057 268 V-KSINVSGHKYGL-VYAGIGWVIWR--NKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFE----- 338 (494)
Q Consensus 268 ~-D~~~~~~hK~l~-~p~g~G~~~~~--~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~----- 338 (494)
. .++..+++|.+. ++.++|+++.. ++... +.+.....+.. .++....+.+++.++...+...
T Consensus 252 ~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~ 322 (418)
T 3rq1_A 252 ILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIA-DEFFEVNKSTS--------RATWSNICRPAMRTMANIVADPAKFKE 322 (418)
T ss_dssp EEEEEEEESTTTTTCCSSCCEEEEEEESSHHHH-HHHHHHHHHHH--------HHHTSSCCHHHHHHHHHHHTCHHHHHH
T ss_pred ceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHH-HHHHHHHHHHH--------hhccCCCchHHHHHHHHHhCCHHHHHH
Confidence 1 266678999764 66788998862 33222 21111100000 0000012233344444444321
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCce
Q 011057 339 ---GYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHIT 415 (494)
Q Consensus 339 ---g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~ 415 (494)
..+++.++..++++++.+.|++++ +++..+ ..+++.|.-. .+..++.+.|.++|+.+... ..
T Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~--~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~g--------~~ 387 (418)
T 3rq1_A 323 YEAERNCYYQLIRDRADIFKQEAAQVG-LPMLPY--RGGFFITIPT----DSANAICEELKKEHIYVIAL--------AN 387 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-CCCCCC--CSSSEEEEEC----TTHHHHHHHHHHTTEECEEC--------SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCC--CceEEEEcCC----CCHHHHHHHHHhCCEEEecC--------CC
Confidence 223455677788889999999884 776544 3454444311 15778999999999986431 24
Q ss_pred EEEEEeccCCChHHHHHHHHHHHHHHHHHhc
Q 011057 416 VLRVVIREDFSRTLAERLVLDITKVLHELDS 446 (494)
Q Consensus 416 ~lRvs~~~~~t~~~id~~i~~l~~~~~~l~~ 446 (494)
.+|+++. ..+.++++++++.|+++++++.+
T Consensus 388 ~iRis~~-~~~~~~i~~~~~~l~~~l~~~~~ 417 (418)
T 3rq1_A 388 GIRIAAC-GIPKCQMTGLAEKIYNAMKSLGK 417 (418)
T ss_dssp EEEEEGG-GSCHHHHTTHHHHHHHHHHHTTC
T ss_pred CeEEEEe-cCCHHHHHHHHHHHHHHHHHHhc
Confidence 6999976 56899999999999999887653
No 138
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.92 E-value=1.3e-23 Score=210.14 Aligned_cols=333 Identities=12% Similarity=0.059 Sum_probs=215.1
Q ss_pred ChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHH-HHHhCCCCCCCCCcceeeecChhHHHHHHHHHH-HHHHHHHH
Q 011057 68 MEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNII-ARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAF-KRKWQNKR 145 (494)
Q Consensus 68 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~l-a~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~-~~~~~~~~ 145 (494)
+++.+.+++.+++..+...+ ..|...++| +.+ |+++|.. ..++++++||+|+.+++.++ ..
T Consensus 14 ~~~~i~~a~~~~~~~~~~~~-~~~~~~~l~----~~~~a~~~g~~------~~~v~~~sgt~al~~al~~l~~~------ 76 (377)
T 3ju7_A 14 PVIEYLDELKEIDASHIYTN-YGPINQRFE----QTIMSGFFQNR------GAVTTVANATLGLMAAIQLKKRK------ 76 (377)
T ss_dssp CGGGGHHHHHHHHHHTCCSS-SCHHHHHHH----HHHHHHTSTTC------SEEEEESCHHHHHHHHHHHHSCT------
T ss_pred CcHHHHHHHHHHHHcCCccc-CCHHHHHHH----HHHHHHHhCCC------CeEEEeCCHHHHHHHHHHHcCCC------
Confidence 34567888888887654321 234554544 558 9999932 23889999999999888776 21
Q ss_pred HhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhh-hhC--CeEEEEeeCCCCcccccCHH
Q 011057 146 KAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMV-DEN--TICVAAILGSTLNGEFEDVK 222 (494)
Q Consensus 146 ~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i-~~~--t~~vv~~~~~~~tG~~~~l~ 222 (494)
.+++|+++.++|.++..++...|++++.++++++++.+|+++|++++ +++ |++|+ +++++|...|++
T Consensus 77 -------~Gd~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~~~ 146 (377)
T 3ju7_A 77 -------KGKYALMPSFTFPATPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMNLE 146 (377)
T ss_dssp -------TCCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCCCH
T ss_pred -------CcCEEEECCCCcHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccCHH
Confidence 13689999999999999999999999999998656899999999998 666 87775 677899999999
Q ss_pred HHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCccccccc
Q 011057 223 LLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIF 302 (494)
Q Consensus 223 ~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~ 302 (494)
+|.++|+ + |+++|+|++|+.+.. ... ....-....+++++++.||++.++ ..|+++++++... ..+..
T Consensus 147 ~i~~la~-~------~~~vi~D~a~a~g~~--~~~-~~~g~~~~d~~~~S~~~~K~l~~g-~gG~~~~~~~~l~-~~~~~ 214 (377)
T 3ju7_A 147 EYEELEK-K------GVPVVVDAAPGFGLM--NGG-MHYGQDFSGMIIYSFHATKPFGIG-EGGLIYSKNEEDI-QRIKR 214 (377)
T ss_dssp HHHHHHH-T------TCCBEEECTTCTTCE--ETT-EETTTTCSSEEEEECBTTSSSCCB-SCEEEEESCHHHH-HHHHH
T ss_pred HHHHHHh-c------CCEEEEECCCccCCe--ECC-EeccCCCCcEEEEECCCCCcCCCC-CcEEEEECCHHHH-HHHHH
Confidence 9999999 9 999999999986642 111 000001124677777789999763 4566666554322 11111
Q ss_pred ccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeE--EeecCC---CccEEE
Q 011057 303 HINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFN--IVSKDE---GVPLVA 377 (494)
Q Consensus 303 ~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~--~~~~~~---~~~~v~ 377 (494)
...+...........+.......+.++.++. +.+.+..+.++..++++++.+.|++++++. +..... ...++.
T Consensus 215 ~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~--~l~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 292 (377)
T 3ju7_A 215 MGNFGFDTNRECTMMGFNCKMSEYAAAIGIA--TMKKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMP 292 (377)
T ss_dssp HTBTTBCTTSCBCSSCCBCCCCHHHHHHHHH--HHHTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEE
T ss_pred HHhcCCCCCCceeeccccCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEE
Confidence 1111000000000001111122222222222 235567788888999999999999987542 111111 112345
Q ss_pred EEecCCCCCCHHHHHHHHHhcCceeeccccCCC-----C-------------CCceEEEEEeccCCChHHHHHHHHHHHH
Q 011057 378 FSLKDNKRHDEFEVAELLRRFGWIVPAYTMPAD-----A-------------QHITVLRVVIREDFSRTLAERLVLDITK 439 (494)
Q Consensus 378 f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~-----~-------------~~~~~lRvs~~~~~t~~~id~~i~~l~~ 439 (494)
+.++. ..+.+++.+.|.++||.++.+..++. . .....+|+.++..+|.+|++++++.|++
T Consensus 293 ~~~~~--~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~ 370 (377)
T 3ju7_A 293 ILCPE--EVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQ 370 (377)
T ss_dssp EECCT--TSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC
T ss_pred EEeCC--hhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHH
Confidence 55532 33578999999999998865432110 0 0135799999999999999998888877
Q ss_pred HHHH
Q 011057 440 VLHE 443 (494)
Q Consensus 440 ~~~~ 443 (494)
+++.
T Consensus 371 ~~~~ 374 (377)
T 3ju7_A 371 KVVS 374 (377)
T ss_dssp ----
T ss_pred HHhc
Confidence 6654
No 139
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.92 E-value=3.5e-23 Score=210.37 Aligned_cols=334 Identities=14% Similarity=0.088 Sum_probs=214.2
Q ss_pred ChHHHHHHHHHHhcccC-CCCC---CChh---hHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHH
Q 011057 68 MEPECDKLMMAAINKNY-VDMD---EYPV---TTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRK 140 (494)
Q Consensus 68 ~~p~~~~~~~~~~~~~~-~~~~---~~~~---~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~ 140 (494)
.+|.+.+++.+.+.... ..+. .+++ ...+++..++++++++|.+. ..++++||++|+..++.++..
T Consensus 44 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~------~~v~~~~Gs~a~~~al~~~~~- 116 (425)
T 3ecd_A 44 VSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGH------ANVQPHSGAQANGAVMLALAK- 116 (425)
T ss_dssp CCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSE------EECCCSSHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCC------ceeecCchHHHHHHHHHHccC-
Confidence 37889898888774322 1111 1111 12445556688999999874 234588999999888777622
Q ss_pred HHHHHHhcCCCCCCCeEEeCCCcchH-HHHH--HHHcCCee--EEEeccCCccccCHHHHHHhhh-hCCeEEEEeeCCCC
Q 011057 141 WQNKRKAEGKPFDKPNIVTGANVQVC-WEKF--ARYFEVEL--KEVKLSEGYYVMDPVKAVEMVD-ENTICVAAILGSTL 214 (494)
Q Consensus 141 ~~~~~~~~g~~~~~~~vi~~~~~h~s-~~~~--~~~~G~~v--~~v~~~~~~~~~d~~~L~~~i~-~~t~~vv~~~~~~~ 214 (494)
.+++|+++.++|.+ +... ....|..+ +.++++++++.+|+++|++++. .++++|+++++++
T Consensus 117 ------------~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~- 183 (425)
T 3ecd_A 117 ------------PGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAY- 183 (425)
T ss_dssp ------------TTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEEECSCC-
T ss_pred ------------CCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEEccccC-
Confidence 12689999999977 2222 22456544 4555554457899999999997 5788888887666
Q ss_pred cccccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCC
Q 011057 215 NGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKE 294 (494)
Q Consensus 215 tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~ 294 (494)
|...++++|.++|+++ |+++++|++|+.+.. ..+..... ...+|+++.++||++.+| ..|+++.+++.
T Consensus 184 -~~~~~l~~i~~l~~~~------~~~li~De~~~~g~~--~~~~~~~~--~~~~di~~~s~sK~l~g~-~~g~~~~~~~~ 251 (425)
T 3ecd_A 184 -PRKLDFARFRAIADSV------GAKLMVDMAHIAGVI--AAGRHANP--VEHAHVVTSTTHKTLRGP-RGGFVLTNDEE 251 (425)
T ss_dssp -CSCCCHHHHHHHHHHH------TCEEEEECGGGHHHH--HTTSSCCG--GGTCSEEEEESSGGGCCC-SCEEEEESCHH
T ss_pred -CCcCCHHHHHHHHHHc------CCEEEEECcChHhhh--hcccccCc--hhcCcEEEecCCcccCCC-CcEEEEeCCHH
Confidence 6788999999999999 999999999765432 11111111 124789999999998555 45888766432
Q ss_pred CcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCcc
Q 011057 295 DLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVP 374 (494)
Q Consensus 295 ~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~ 374 (494)
.. ..+... .+.+ ..++.+.....++.+++.....+++++..++..++++++.+.|.+.+ +++..++...+
T Consensus 252 ~~-~~~~~~-~~~~-------~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~ 321 (425)
T 3ecd_A 252 IA-KKINSA-VFPG-------LQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGG-VDLVTGGTDNH 321 (425)
T ss_dssp HH-HHHHHH-HC------------CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSS
T ss_pred HH-HHHHhh-hCcc-------ccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCC-CeeccCCCCce
Confidence 22 111110 0100 01233334455566666555556778889999999999999999975 88876433566
Q ss_pred EEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCC---CCCceEEEEEe----ccCCChHHHHHHHHHHHHHHHHH
Q 011057 375 LVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPAD---AQHITVLRVVI----REDFSRTLAERLVLDITKVLHEL 444 (494)
Q Consensus 375 ~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~---~~~~~~lRvs~----~~~~t~~~id~~i~~l~~~~~~l 444 (494)
++.+.+.+ .+.+...+.+.|.++|+.+.....|.. ......+|+++ ...+++++++++++.|+++++..
T Consensus 322 ~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 322 LLLVDLRP-KGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp EEEEECGG-GTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCC-CCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 77777643 245678899999999999864433321 12235799994 44455899999999999998876
No 140
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.92 E-value=1.9e-23 Score=211.91 Aligned_cols=370 Identities=12% Similarity=0.031 Sum_probs=225.4
Q ss_pred HHHHHHHHhhhhc-CCCCCcccccccCCCh---HHHHHHHHHHhcccC-----CCCCCChhhHHHHHHHHHHHHHHhCCC
Q 011057 41 AAYQIINDELMLD-GNPRLNLASFVTTWME---PECDKLMMAAINKNY-----VDMDEYPVTTELQNRCVNIIARLFNAP 111 (494)
Q Consensus 41 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---p~~~~~~~~~~~~~~-----~~~~~~~~~~~le~~~~~~la~l~g~~ 111 (494)
.+.+.+.++.... +...++|+.+.+...+ +.+.+++.+.+.+.. ..|...++..++++.+.+++.+.+|.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~ 95 (417)
T 3g7q_A 16 GITRLMEDLNDGLRTPGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWD 95 (417)
T ss_dssp CHHHHHHHHHC-----CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCC
T ss_pred cHHHHHHHHHhhccCCCceEecCcCCCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCC
Confidence 3444555554332 2344667776655433 345666666554321 245566678899999888888888876
Q ss_pred CCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeC-CCcchHHHHHHHHc----CCeeEEEeccCC
Q 011057 112 LEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTG-ANVQVCWEKFARYF----EVELKEVKLSEG 186 (494)
Q Consensus 112 ~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~-~~~h~s~~~~~~~~----G~~v~~v~~~~~ 186 (494)
.+ ...+++|+|+++|+.+++.++... |......+|+++ .++|..+...+... +..+..++++.+
T Consensus 96 ~~---~~~i~~t~G~t~al~~~~~~l~~~--------gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (417)
T 3g7q_A 96 IE---PQNIALTNGSQSAFFYLFNLFAGR--------RADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEG 164 (417)
T ss_dssp CC---GGGEEEESCHHHHHHHHHHHHSBC------------CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGG
T ss_pred CC---cccEEEeCCcHHHHHHHHHHHcCC--------CccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCc
Confidence 42 246999999999999998887431 100011278887 88888776654322 333344444322
Q ss_pred --ccccCHHHHHHhhhhCCeEEEEeeCCCCcccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccc
Q 011057 187 --YYVMDPVKAVEMVDENTICVAAILGSTLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEW 261 (494)
Q Consensus 187 --~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~ 261 (494)
++.+|+++|+ +.+++++|++++++||||.+.| +++|+++|+++ ++++++|++|+.+..........
T Consensus 165 ~~~~~~d~~~l~--~~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~------~~~li~De~~~~~~~~~~~~~~~- 235 (417)
T 3g7q_A 165 QFKYHVDFEHLH--IGEETGMICVSRPTNPTGNVITDEELMKLDRLANQH------NIPLVIDNAYGVPFPGIIFSEAR- 235 (417)
T ss_dssp EEEEECCGGGCC--CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT------TCCEEEECTTCTTTTCCBCSCCC-
T ss_pred ccccccCHHHhc--cccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHc------CCEEEEeCCCccccccccccccc-
Confidence 3678999888 6778899999999999999987 88999999999 99999999998642111101100
Q ss_pred cccCCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHh-HH
Q 011057 262 DFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFE-GY 340 (494)
Q Consensus 262 ~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~-g~ 340 (494)
....+.+++..+++|+++++.++|+++... ... +.+....... ....+.....++...++..... ..
T Consensus 236 -~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~-~~~-~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~~ 303 (417)
T 3g7q_A 236 -PLWNPNIILCMSLSKLGLPGSRCGIIIAND-KTI-TAIANMNGII---------SLAPGGMGPAMMCEMIKRNDLLRLS 303 (417)
T ss_dssp -CCCCTTEEEEEESGGGTCTTSCCEEEECCH-HHH-HHHHHHHHHH---------CCCCCSHHHHHHHHHHHTTCHHHHH
T ss_pred -cCCCCCEEEEEechhccCCCcceEEEEeCH-HHH-HHHHHhhcce---------eeCCCcHHHHHHHHHHcCcchHHHH
Confidence 012356788889999887778899887532 222 2111100000 0111112222233333322211 11
Q ss_pred HH-HHHHHHHHHHHHHHHHhh-CCC--eEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCC-CC---
Q 011057 341 RN-VMENCHENAMVLKEGLEK-TGR--FNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPAD-AQ--- 412 (494)
Q Consensus 341 ~~-~~~~~~~~a~~l~~~L~~-~~~--~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~-~~--- 412 (494)
.+ +.+++.++++++.+.|++ +++ +++..+. ...++.+.+.. .+.+..++.+.|.++|+.+........ ..
T Consensus 304 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~g~~~~~~~~~-~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~ 381 (417)
T 3g7q_A 304 ETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPE-GAIFLWLWFKD-LPITTELLYQRLKARGVLMVPGHYFFPGLDKPW 381 (417)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCC-BSSEEEEECTT-CSSCHHHHHHHHHHTTEECEEGGGGCTTBSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCC-cceEEEEEcCC-CCCCHHHHHHHHHHCCEEEECchhhCCCCcccc
Confidence 22 445566677777777766 442 6665443 34556666642 246788999999999998864332111 11
Q ss_pred --CceEEEEEeccCCChHHHHHHHHHHHHHHHHHhc
Q 011057 413 --HITVLRVVIREDFSRTLAERLVLDITKVLHELDS 446 (494)
Q Consensus 413 --~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~~ 446 (494)
...++|++++. ++++++++++.|+++++++.+
T Consensus 382 ~~~~~~iRis~~~--~~~~i~~~~~~l~~~l~~~~~ 415 (417)
T 3g7q_A 382 PHTHQCMRMNYVP--EPDKIEAGVKILAEEIERAWR 415 (417)
T ss_dssp GGGGGEEEEESCS--CHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEecC--CHHHHHHHHHHHHHHHHHHHh
Confidence 15689999974 899999999999999887643
No 141
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.92 E-value=3.3e-23 Score=214.70 Aligned_cols=338 Identities=11% Similarity=0.007 Sum_probs=222.0
Q ss_pred HHHHHHHHHhccc----CCCCCCChhhHHHHHHHHHHHHHHhC-CCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHH
Q 011057 71 ECDKLMMAAINKN----YVDMDEYPVTTELQNRCVNIIARLFN-APLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKR 145 (494)
Q Consensus 71 ~~~~~~~~~~~~~----~~~~~~~~~~~~le~~~~~~la~l~g-~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~ 145 (494)
.+.+.+.+++... ...|....+..++++++.+++++..| .+.+ ...+++|+|+++++.+++.++...
T Consensus 105 ~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~---~~~i~~t~G~~~ai~~~~~~l~~~----- 176 (498)
T 3ihj_A 105 DAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPAD---PDNIYLTTGASDGISTILKILVSG----- 176 (498)
T ss_dssp HHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCC---GGGEEEESSHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCC---cccEEEcCCHHHHHHHHHHHHcCC-----
Confidence 3344445555542 23456666888999999999998885 6532 246999999999999888877321
Q ss_pred HhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCC-ccccCHHHHHHhhhh-----CCeEEEEeeCCCCccccc
Q 011057 146 KAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEG-YYVMDPVKAVEMVDE-----NTICVAAILGSTLNGEFE 219 (494)
Q Consensus 146 ~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~~i~~-----~t~~vv~~~~~~~tG~~~ 219 (494)
|. ..++.|+++.+.|..+..+++..|++++.++++++ +|.+|+++|++++++ ++++|++++++||||.+.
T Consensus 177 ---gd-~~~d~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~ 252 (498)
T 3ihj_A 177 ---GG-KSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQ 252 (498)
T ss_dssp ---CG-GGSEEEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCC
T ss_pred ---CC-CCCCEEEEeCCCchhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcC
Confidence 10 00248999999999999999999999999999753 478999999999987 588999999999999994
Q ss_pred ---CHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccc-cc--cC-----CCce-EEEEcCcccCC--cCCce
Q 011057 220 ---DVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEW-DF--RL-----PLVK-SINVSGHKYGL--VYAGI 285 (494)
Q Consensus 220 ---~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~--~~-----~~~D-~~~~~~hK~l~--~p~g~ 285 (494)
++++|+++|+++ ++++++|++|+.+...-..+.... .+ .. ..+. ++..+++|.+. ++.++
T Consensus 253 s~~~l~~i~~la~~~------~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~ 326 (498)
T 3ihj_A 253 SRKCIEDVIHFAWEE------KLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRG 326 (498)
T ss_dssp CHHHHHHHHHHHHHH------TCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCC
T ss_pred CHHHHHHHHHHHHHc------CcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccce
Confidence 477799999999 999999999987643100000000 00 00 1222 34558899874 67788
Q ss_pred EEEEE--eCCCCcccccccc-cCCCCCCCCCcccccCcchHHHHHHHHHHHHhcH------------hHHHHHHHHHHHH
Q 011057 286 GWVIW--RNKEDLPEELIFH-INYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGF------------EGYRNVMENCHEN 350 (494)
Q Consensus 286 G~~~~--~~~~~~~~~~~~~-~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~------------~g~~~~~~~~~~~ 350 (494)
||+++ .++... ..+... ..+. + .+.+++.+...++.. ....++.+++.++
T Consensus 327 G~~~~~~~~~~l~-~~l~~~~~~~~----------~----~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~ 391 (498)
T 3ihj_A 327 GYMEVINLHPEIK-GQLVKLLSVRL----------C----PPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKK 391 (498)
T ss_dssp EEEEEESCCHHHH-HHHHHHHHHSC----------C----CCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCHHHH-HHHHHHHhccC----------C----CCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHH
Confidence 99875 333222 211111 0010 1 112233333333321 1234566778889
Q ss_pred HHHHHHHHhhCCCeEEeecCCCccEEEE-EecCC---------CCCCHHHH--HHHHHhcCceeeccccCCCCCCceEEE
Q 011057 351 AMVLKEGLEKTGRFNIVSKDEGVPLVAF-SLKDN---------KRHDEFEV--AELLRRFGWIVPAYTMPADAQHITVLR 418 (494)
Q Consensus 351 a~~l~~~L~~~~~~~~~~~~~~~~~v~f-~~~~~---------~~~~~~~l--~~~L~~~Gi~v~~~~~~~~~~~~~~lR 418 (494)
++++.+.|++++++++..+ ..+++.| ++..+ .+.+.+++ .+.|.++||.+.....+....+...+|
T Consensus 392 ~~~l~~~L~~~~g~~~~~p--~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~R 469 (498)
T 3ihj_A 392 AKLTEDLFNQVPGIHCNPL--QGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFR 469 (498)
T ss_dssp HHHHHHHHHTSTTEECCCC--CBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEE
T ss_pred HHHHHHHHhcCCCcEecCC--CeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEE
Confidence 9999999999977887654 4566555 44321 13344553 556778899886544443234556799
Q ss_pred EEeccCCChHHHHHHHHHHHHHHHHHh
Q 011057 419 VVIREDFSRTLAERLVLDITKVLHELD 445 (494)
Q Consensus 419 vs~~~~~t~~~id~~i~~l~~~~~~l~ 445 (494)
+++. .+.++++.+++.|+++++++.
T Consensus 470 is~~--~~~e~l~~~i~~L~~~~~~~~ 494 (498)
T 3ihj_A 470 MTIL--PPVEKLKTVLQKVKDFHINFL 494 (498)
T ss_dssp EECC--SCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeC--CCHHHHHHHHHHHHHHHHHHH
Confidence 9995 588899999999988887664
No 142
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.92 E-value=8.3e-23 Score=208.31 Aligned_cols=349 Identities=11% Similarity=0.021 Sum_probs=223.8
Q ss_pred HHHHHHHHHHhhh-hcCCCCCcccccccC-CChHHHHHHHHHHhcc-----cCCCCCCChhhHHHHHHHHHHHHHHhCCC
Q 011057 39 KEAAYQIINDELM-LDGNPRLNLASFVTT-WMEPECDKLMMAAINK-----NYVDMDEYPVTTELQNRCVNIIARLFNAP 111 (494)
Q Consensus 39 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~-----~~~~~~~~~~~~~le~~~~~~la~l~g~~ 111 (494)
.+.+.+....... .++.+.++|+.+.+. +.+|.+.+++.+++.. ....|....+..++++++.+|+.+.++.+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~ 118 (432)
T 3ei9_A 39 FPEIARRRSAHLLKYPDAQVISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIG 118 (432)
T ss_dssp HHHHHHHHHHHHHHCTTCCCEECSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHhhhhcCCCCCeEEccCCCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCC
Confidence 3444444433322 344456677776555 3467888888887763 22234444567888888777776544554
Q ss_pred CCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCC------------eeE
Q 011057 112 LEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEV------------ELK 179 (494)
Q Consensus 112 ~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~------------~v~ 179 (494)
+ ..+++|+|+++++.+ +..+.. .++.|+++.+.|.++...++..|. +++
T Consensus 119 ~-----~~i~~t~G~~~al~~-l~~l~~-------------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~ 179 (432)
T 3ei9_A 119 D-----DDVFVSDGAKCDISR-LQVMFG-------------SNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIE 179 (432)
T ss_dssp G-----GGEEEESCHHHHHHH-HHHHHC-------------TTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCE
T ss_pred c-----ceEEECCChHHHHHH-HHHHcC-------------CCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceE
Confidence 3 469999999999875 333321 126899999999999999888884 688
Q ss_pred EEeccCC-ccccCHHHHHHhhhhCCeEEEEeeCCCCcccccC---HHHHHHHHHHhhcccCCCceEEEeccccccccccc
Q 011057 180 EVKLSEG-YYVMDPVKAVEMVDENTICVAAILGSTLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFL 255 (494)
Q Consensus 180 ~v~~~~~-~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~ 255 (494)
.++++++ ++..|+++ .+++++|++++++||||.+.+ +++|+++|+++ |+++++|++|+.+...-.
T Consensus 180 ~~~~~~~~~~~~~l~~-----~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~------~~~li~Dea~~~~~~~~~ 248 (432)
T 3ei9_A 180 YMRCTPENGFFPDLST-----VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKN------GSIIVYDSAYAMYMSDDN 248 (432)
T ss_dssp EEECCGGGTTSCCGGG-----CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTGGGCCSSC
T ss_pred EeccCcccCCcCChhh-----CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHc------CcEEEEccchHhhccCCC
Confidence 8888743 23445332 356889999999999999854 67788889999 999999999997643210
Q ss_pred CCcccccc-cCCCceEEEEcCcccCC-cCCceEEEEEeCCCCc------ccccccccCCCCCCCCCcccccCcchHHHHH
Q 011057 256 YPELEWDF-RLPLVKSINVSGHKYGL-VYAGIGWVIWRNKEDL------PEELIFHINYLGADQPTFTLNFSKGSSQVIA 327 (494)
Q Consensus 256 ~~~~~~~~-~~~~~D~~~~~~hK~l~-~p~g~G~~~~~~~~~~------~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a 327 (494)
..... .+ .....+++..+++|+++ ++.++|++++++.... ...+....... . .+ .+.++
T Consensus 249 ~~~~~-~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~---~~~~~ 315 (432)
T 3ei9_A 249 PRSIF-EIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTC--------F-NG---ASNIS 315 (432)
T ss_dssp CSSGG-GSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHS--------C-CC---SCHHH
T ss_pred CCChh-hcCCCCCeEEEEecchhccCCcccceEEEEEChHHhhcchHHHHHHHHHHhccc--------c-CC---CCHHH
Confidence 00010 11 12245688889999885 7778999887664310 11110000000 0 11 22334
Q ss_pred HHHHHHHhc---HhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhc-Cceee
Q 011057 328 QYYQLIRLG---FEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRF-GWIVP 403 (494)
Q Consensus 328 ~~~al~~l~---~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~-Gi~v~ 403 (494)
+.+++..+. .+.+++..+++.++++++.+.|++++ +++..+. ..+++.+.+. +.+..++.++|.++ |+.+.
T Consensus 316 ~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~-~~~~~~~~~~---~~~~~~~~~~ll~~~gv~v~ 390 (432)
T 3ei9_A 316 QAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLG-YDVYGGK-NAPYVWVHFP---NQSSWDVFAEILEKTHVVTT 390 (432)
T ss_dssp HHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEECS-SSSEEEEECT---TSCHHHHHHHHHHHHCEECE
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHCC-ceecCCC-cceEEEEECC---CCCHHHHHHHHHHHCCEEEe
Confidence 444454443 24467788888999999999999985 8877643 4567777774 35677888887765 99886
Q ss_pred ccccCCCCCCceEEEEEeccCCChHHHHHHHHHHH
Q 011057 404 AYTMPADAQHITVLRVVIREDFSRTLAERLVLDIT 438 (494)
Q Consensus 404 ~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~ 438 (494)
....+. ..+..++|+++. .++++++..++.|+
T Consensus 391 ~g~~f~-~~~~~~iRis~~--~~~e~l~~~l~rl~ 422 (432)
T 3ei9_A 391 PGSGFG-PGGEGFVRVSAF--GHRENILEACRRFK 422 (432)
T ss_dssp EGGGGC-GGGTTEEEEECC--SCHHHHHHHHHHHH
T ss_pred CchHhC-CCCCCEEEEEec--CCHHHHHHHHHHHH
Confidence 543322 234578999974 36666654444333
No 143
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.92 E-value=6.3e-23 Score=209.92 Aligned_cols=357 Identities=14% Similarity=0.077 Sum_probs=223.4
Q ss_pred CCC-cccccccCCCh---HHHHHHHHHHhcc-------c-----CCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcc
Q 011057 56 PRL-NLASFVTTWME---PECDKLMMAAINK-------N-----YVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAV 119 (494)
Q Consensus 56 ~~~-~~~~~~~~~~~---p~~~~~~~~~~~~-------~-----~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~ 119 (494)
..+ +|+.+.+..++ +.+.+++.+.+.+ . ...|....+..++++++.+++.+.+|.+.+ ...
T Consensus 32 ~~i~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~---~~~ 108 (444)
T 3if2_A 32 QPVNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLT---SEN 108 (444)
T ss_dssp SCCEECSCCCCCCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCC---GGG
T ss_pred hhhhccCCCCCCcccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCC---HHH
Confidence 446 66666655533 2345555555544 1 133555567788999988888888877542 246
Q ss_pred eeeecChhHHHHHHHHHHHHHHHHHHHhcCCC-----CC-CC---eEEeC-CCcchHHHHHH------HHcCCeeEEEec
Q 011057 120 GVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKP-----FD-KP---NIVTG-ANVQVCWEKFA------RYFEVELKEVKL 183 (494)
Q Consensus 120 ~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~-----~~-~~---~vi~~-~~~h~s~~~~~------~~~G~~v~~v~~ 183 (494)
+++|+|+++|+.+++.++... |.. .. +. +|+++ .++|..+...+ ...|..+..+++
T Consensus 109 i~~t~G~t~al~~~~~~l~~~--------gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (444)
T 3if2_A 109 IALTNGSQNAFFYLFNLFGGA--------FVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTH 180 (444)
T ss_dssp EEEESSHHHHHHHHHHHSSEE--------EECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEE
T ss_pred EEEecCcHHHHHHHHHHHhCC--------CccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEeccc
Confidence 999999999999888776321 100 00 00 57765 77777665532 334667777787
Q ss_pred cCC----ccccCHHHHHHh---hhhCCeEEEEeeCCCCcccccC---HHHHHHHHHHhhcccCCCceEEEeccccccccc
Q 011057 184 SEG----YYVMDPVKAVEM---VDENTICVAAILGSTLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAP 253 (494)
Q Consensus 184 ~~~----~~~~d~~~L~~~---i~~~t~~vv~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~ 253 (494)
+++ ++.+|+++|+++ +.+++++|++++++||||.+.| +++|+++|+++ ++++|+|++|+.+...
T Consensus 181 ~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~------~~~li~De~~~~~~~~ 254 (444)
T 3if2_A 181 DGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRY------DIPLIIDNAYGMPFPN 254 (444)
T ss_dssp TTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT------TCCEEEECTTCTTTTC
T ss_pred ccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHC------CCEEEEECCCCCcccc
Confidence 642 247999999998 6778899999999999999988 88899999999 9999999999864211
Q ss_pred ccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHH
Q 011057 254 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLI 333 (494)
Q Consensus 254 ~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~ 333 (494)
...... .....+.+++..+++|+++++.++|+++.+.+ .. ..+....... + .+.+.....++...++
T Consensus 255 ~~~~~~--~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~-l~-~~~~~~~~~~-------~--~~~~~~~~~a~~~~l~ 321 (444)
T 3if2_A 255 IIYSDA--HLNWDNNTILCFSLSKIGLPGMRTGIIVADAK-VI-EAVSAMNAVV-------N--LAPTRFGAAIATPLVA 321 (444)
T ss_dssp CBCSCC--CCCCCTTEEEEEESTTTTCGGGCCEEEECCHH-HH-HHHHHHHHHH-------H--SSCCCHHHHHHHHHHH
T ss_pred cccccc--cccCCCCEEEEechhhccCCCCceEEEEECHH-HH-HHHHHHHHhc-------c--CCCChHHHHHHHHHHH
Confidence 110100 01123578888999999777788998875332 21 2111100000 0 1111122222222222
Q ss_pred HhcHh-HHHH-HHHHHHHHHHHHHHHHhh-CCC--eEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccC
Q 011057 334 RLGFE-GYRN-VMENCHENAMVLKEGLEK-TGR--FNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMP 408 (494)
Q Consensus 334 ~l~~~-g~~~-~~~~~~~~a~~l~~~L~~-~~~--~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~ 408 (494)
..... ...+ ..+++.++++++.+.|.+ +++ +++..+. ...++.+.+.. .+.+..++.+.|.++|+.+......
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~g~~~~~~~~~-~~~~~~~l~~~l~~~gi~v~~g~~~ 399 (444)
T 3if2_A 322 NDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPE-GAIFLWLWFKD-LPISTLDLYERLKAKGTLIVPSEYF 399 (444)
T ss_dssp TSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCC-BSSEEEEEETT-CSSCHHHHHHHHHHTTEECEEGGGS
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCC-ccEEEEEEcCC-CCCCHHHHHHHHHHCCeEEecchhh
Confidence 11111 1122 344556666677777765 343 5555443 34566667743 2467889999999999998654332
Q ss_pred CC-------CCCceEEEEEeccCCChHHHHHHHHHHHHHHHHHhc
Q 011057 409 AD-------AQHITVLRVVIREDFSRTLAERLVLDITKVLHELDS 446 (494)
Q Consensus 409 ~~-------~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~~ 446 (494)
.. .....++|++++. ++++++.+++.|+++++++..
T Consensus 400 ~~~~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~~~~~ 442 (444)
T 3if2_A 400 FPGVDVSDYQHAHECIRMSIAA--DEQTLIDGIKVIGEVVRELYD 442 (444)
T ss_dssp CTTCCCTTCSGGGSEEEEESSS--CHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCcccccCCCeEEEEEeC--CHHHHHHHHHHHHHHHHHHHc
Confidence 11 1123689999985 899999999999999887653
No 144
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.92 E-value=8.6e-23 Score=208.53 Aligned_cols=337 Identities=12% Similarity=0.008 Sum_probs=210.5
Q ss_pred ChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 011057 68 MEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA 147 (494)
Q Consensus 68 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~ 147 (494)
..+++.+++.+++.... +...+.. .++++.+++++|.+. .+++++|++|+.+++.++...+..+
T Consensus 41 ~~~~~~~a~~~~~~~~~--~~~~~~~----~~l~~~la~~~g~~~-------~i~~~sGt~a~~~al~~l~~~~~~~--- 104 (437)
T 3bb8_A 41 IGTKELQLMVEASLDGW--LTTGRFN----DAFEKKLGEYLGVPY-------VLTTTSGSSANLLALTALTSPKLGV--- 104 (437)
T ss_dssp CCHHHHHHHHHHHHHCC--CBSCHHH----HHHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHTTCGGGGG---
T ss_pred CCHHHHHHHHHHHHcCC--cCCChHH----HHHHHHHHHHHCCCc-------EEEeCCHHHHHHHHHHHhhhccccc---
Confidence 35677788877776432 2233433 346667999999863 7889999999998887762100000
Q ss_pred cCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHH
Q 011057 148 EGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDL 227 (494)
Q Consensus 148 ~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~l 227 (494)
.+. ..+++|+++.++|.++..++...|++++.++++++++.+|+++|+++++++|++|++++ ++|...|+++|.++
T Consensus 105 ~~~-~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~~~~~i~~l 180 (437)
T 3bb8_A 105 RAL-KPGDEVITVAAGFPTTVNPTIQNGLIPVFVDVDIPTYNVNASLIEAAVSDKTKAIMIAH---TLGNLFDLAEVRRV 180 (437)
T ss_dssp GSC-CTTCEEEECSSSCHHHHHHHHHTTCEEEECCEETTTTEECGGGHHHHCCTTEEEEEEEC---GGGCCCCHHHHHHH
T ss_pred ccC-CCcCEEEECCCCcHHHHHHHHHcCCEEEEEeccCccCCcCHHHHHHhcCCCCeEEEEeC---CCCChhcHHHHHHH
Confidence 000 01368999999999999999999999999998864478999999999988888888875 46888999999999
Q ss_pred HHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEc---CcccCCcCCceEEEEEeCCCCccccccccc
Q 011057 228 LAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVS---GHKYGLVYAGIGWVIWRNKEDLPEELIFHI 304 (494)
Q Consensus 228 a~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~---~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~ 304 (494)
|+++ ++++|+|+||+.+..+ .. . .++ ...|+++.+ +||+ ++...|+++.+++ .+...+....
T Consensus 181 ~~~~------~~~li~D~a~~~g~~~--~~--~-~~~-~~~d~~~~s~~~~k~l--~~g~gg~~~~~~~-~~~~~~~~~~ 245 (437)
T 3bb8_A 181 ADKY------NLWLIEDCCDALGSTY--DG--K-MAG-TFGDIGTVSFYPAKHI--TMGEGGAVFTQSA-ELKSIIESFR 245 (437)
T ss_dssp HHHH------TCEEEEECTTCTTCEE--TT--E-ETT-SSSSEEEEECSTTSSS--CCSSCEEEEESCH-HHHHHHHHHH
T ss_pred HHHc------CCEEEEECccccCceE--CC--e-ecc-cccCEEEEECcCCcCC--CCCCeEEEEeCCH-HHHHHHHHHH
Confidence 9999 9999999999865432 11 1 111 125665555 3443 2233466655432 2222111100
Q ss_pred CCCCC---------------------CC----CCcc--cccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHH
Q 011057 305 NYLGA---------------------DQ----PTFT--LNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEG 357 (494)
Q Consensus 305 ~y~~~---------------------~~----~~~~--~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~ 357 (494)
.|... .. ..++ ..+.......+...+++..+ +.+.+..++..++++++.++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l--~~~~~~~~~~~~~~~~l~~~ 323 (437)
T 3bb8_A 246 DWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLAQL--ERIEEFVEKRKANFKYLKDA 323 (437)
T ss_dssp BTTBCC----------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HhCcccccccccccccccccccccccccccccccccccccCcccCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 11100 00 0000 00111011122222333333 22345666678889999999
Q ss_pred HhhCCCeEEeecCC-----CccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCC---C--C---------------
Q 011057 358 LEKTGRFNIVSKDE-----GVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPAD---A--Q--------------- 412 (494)
Q Consensus 358 L~~~~~~~~~~~~~-----~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~---~--~--------------- 412 (494)
|++++++.++.... ....+.+.+....+.+..++.+.|.++||.++.+..|.. . .
T Consensus 324 L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~GI~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 403 (437)
T 3bb8_A 324 LQSCADFIELPEATENSDPSWFGFPITLKEDSGVSRIDLVKFLDEAKVGTRLLFAGNLTRQPYFHDVKYRVVGELTNTDR 403 (437)
T ss_dssp GGGGTTTEECCCCCTTEECCCSSEEEEECGGGSSCHHHHHHHHHHTTBCCBCCTTSSGGGSGGGSSCCCEECSCCHHHHH
T ss_pred hhccCCccccCCCCCCCceeeEEEEEEECCcCcCcHHHHHHHHHHCCCceeccCCcccccCchhhccCccccCCCcHHHH
Confidence 99986666653211 111233333322235788999999999999865433211 0 0
Q ss_pred -CceEEEEEeccCCChHHHHHHHHHHHHHH
Q 011057 413 -HITVLRVVIREDFSRTLAERLVLDITKVL 441 (494)
Q Consensus 413 -~~~~lRvs~~~~~t~~~id~~i~~l~~~~ 441 (494)
....+|++++..+|.+|++++++.|++++
T Consensus 404 ~~~~~lrl~~~~~~t~~di~~i~~~l~~~~ 433 (437)
T 3bb8_A 404 IMNQTFWIGIYPGLTHDHLDYVVSKFEEFF 433 (437)
T ss_dssp HHHHEEEECCSTTCCHHHHHHHHHHHHHHT
T ss_pred HhcCEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 02369999999999999999999888764
No 145
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.91 E-value=3.7e-23 Score=223.13 Aligned_cols=305 Identities=15% Similarity=0.072 Sum_probs=221.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCe
Q 011057 98 NRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVE 177 (494)
Q Consensus 98 ~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~ 177 (494)
.+.++.+++++|.+. ..++++|+++|+..++.++..+ +++|+++.+.|.++..++...|++
T Consensus 208 ~~~ee~la~l~G~d~------~i~~~~Gtt~a~~~~i~al~~~-------------GD~Vlv~~~~h~s~~~~~~~~G~~ 268 (755)
T 2vyc_A 208 GESEKYAARVFGADR------SWSVVVGTSGSNRTIMQACMTD-------------NDVVVVDRNCHKSIEQGLMLTGAK 268 (755)
T ss_dssp HHHHHHHHHHHTCSE------EEEESSHHHHHHHHHHHHHCCT-------------TCEEEEESSCCHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHhCCCc------eEEECCcHHHHHHHHHHHhcCC-------------CCEEEECCCchHHHHHHHHHcCCE
Confidence 456788999999963 3667778889999888777321 368999999999999999999999
Q ss_pred eEEEeccCCcc----cc-----CHHHHHHhhhh--CCe--------EEEEeeCCCCcccccCHHHHHHHHHHhhcccCCC
Q 011057 178 LKEVKLSEGYY----VM-----DPVKAVEMVDE--NTI--------CVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWD 238 (494)
Q Consensus 178 v~~v~~~~~~~----~~-----d~~~L~~~i~~--~t~--------~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~ 238 (494)
++.++.+.+++ .+ |+++|++++.+ +++ +|+++++ |++|.+.|+++|+++|+++ +
T Consensus 269 ~v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~------~ 341 (755)
T 2vyc_A 269 PVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKT------S 341 (755)
T ss_dssp EEEECCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTT------C
T ss_pred EEEEeCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHc------C
Confidence 99998764322 35 99999999976 343 8888887 6899999999999999999 9
Q ss_pred ceEEEecccccccccccCCcccccccCCC--ceE------EEEcCcccCCcCCceEEEEEeCCC-Ccc-cccccccCCCC
Q 011057 239 TPIHVDAASGGFIAPFLYPELEWDFRLPL--VKS------INVSGHKYGLVYAGIGWVIWRNKE-DLP-EELIFHINYLG 308 (494)
Q Consensus 239 ~~l~vD~a~~~~~~~~~~~~~~~~~~~~~--~D~------~~~~~hK~l~~p~g~G~~~~~~~~-~~~-~~~~~~~~y~~ 308 (494)
+++|||+||+.+.. +. +..+......+ +|+ ++.++||++.++.++|++++++.. .+. ..+.......
T Consensus 342 ~~livDeA~~~~~~-~~-~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~~~~~- 418 (755)
T 2vyc_A 342 DRLHFDEAWYGYAR-FN-PIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMH- 418 (755)
T ss_dssp SEEEEECTTCTTGG-GC-GGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHHHHHT-
T ss_pred CEEEEECcCchhcc-cC-cccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHHHHHh-
Confidence 99999999986421 11 11100000123 565 899999999888888999887751 110 1110000011
Q ss_pred CCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCC---------eEEeecCC--------
Q 011057 309 ADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGR---------FNIVSKDE-------- 371 (494)
Q Consensus 309 ~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~---------~~~~~~~~-------- 371 (494)
..++.+...++++.++++.+..+|.+++.++..+++++++++|+++++ |+++.+..
T Consensus 419 -------~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (755)
T 2vyc_A 419 -------ATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGK 491 (755)
T ss_dssp -------SCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCC
T ss_pred -------CCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhcccccccc
Confidence 114455566677888888887775678899999999999999999877 76665321
Q ss_pred ----------------------------------------CccEEEEEecCC--------CCCCHHHHHHHHHhcCceee
Q 011057 372 ----------------------------------------GVPLVAFSLKDN--------KRHDEFEVAELLRRFGWIVP 403 (494)
Q Consensus 372 ----------------------------------------~~~~v~f~~~~~--------~~~~~~~l~~~L~~~Gi~v~ 403 (494)
....++|..++. .+++...+.+.|.++||.+.
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e 571 (755)
T 2vyc_A 492 TYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPT 571 (755)
T ss_dssp EEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCS
T ss_pred ccccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEe
Confidence 013556666431 14677899999999998752
Q ss_pred ccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHHh
Q 011057 404 AYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELD 445 (494)
Q Consensus 404 ~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~ 445 (494)
. .+...+|++++...|++++++++++|+++.+...
T Consensus 572 ~-------~~~~~v~~~~~~g~t~~~~~~l~~al~~~~~~~~ 606 (755)
T 2vyc_A 572 R-------TTDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHYD 606 (755)
T ss_dssp E-------ECSSEEEEECCTTCCTTTTHHHHHHHHHHHHHHH
T ss_pred e-------cCCCeEEEEECCCCCHHHHHHHHHHHHHHHHhhh
Confidence 2 1345699999999999999999999999987764
No 146
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.91 E-value=6.7e-24 Score=211.70 Aligned_cols=322 Identities=12% Similarity=0.057 Sum_probs=210.7
Q ss_pred hHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhc
Q 011057 69 EPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAE 148 (494)
Q Consensus 69 ~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~ 148 (494)
.|++.+++.+.+.... +...+...+ +++.+++++|.+. +++++|||+|+.+++.+++.
T Consensus 15 ~~~v~~a~~~~~~~~~--~~~~~~~~~----l~~~la~~~~~~~-------~~~~~sGt~al~~al~~~~~--------- 72 (367)
T 3nyt_A 15 KDKIDAGIQRVLRHGQ--YILGPEVTE----LEDRLADFVGAKY-------CISCANGTDALQIVQMALGV--------- 72 (367)
T ss_dssp HHHHHHHHHHHHHHCC--CSSCHHHHH----HHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHTTC---------
T ss_pred CHHHHHHHHHHHhcCC--ccCChHHHH----HHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHhCC---------
Confidence 3567777777766542 233444444 5566899999863 89999999999988877621
Q ss_pred CCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHHH
Q 011057 149 GKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLL 228 (494)
Q Consensus 149 g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~la 228 (494)
..+++|+++..+|.++..++...|++++.++++++++.+|+++|++++++++++|+ +++++|...|+++|.++|
T Consensus 73 ---~~gd~Vi~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~~~~i~~la 146 (367)
T 3nyt_A 73 ---GPGDEVITPGFTYVATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAITPRTKAII---PVSLYGQCADFDAINAIA 146 (367)
T ss_dssp ---CTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHH
T ss_pred ---CCcCEEEECCCccHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHhcCcCCcEEE---eeCCccChhhHHHHHHHH
Confidence 01368999999999999999999999999999876689999999999988887775 778999999999999999
Q ss_pred HHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEc--CcccCCcCCceEEEEEeCCCCcccccccccCC
Q 011057 229 AEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVS--GHKYGLVYAGIGWVIWRNKEDLPEELIFHINY 306 (494)
Q Consensus 229 ~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~--~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y 306 (494)
+++ |+++|+|++|+.+.. + ... .+...+ |+++++ +||++.++...|+++.+++... ..+.....+
T Consensus 147 ~~~------~~~li~D~a~~~g~~-~-~~~---~~~~~~-di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~-~~~~~~~~~ 213 (367)
T 3nyt_A 147 SKY------GIPVIEDAAQSFGAS-Y-KGK---RSCNLS-TVACTSFFPSAPLGCYGDGGAIFTNDDELA-TAIRQIARH 213 (367)
T ss_dssp HHT------TCCBEEECTTTTTCE-E-TTE---ETTSSS-SEEEEECCTTSSSCCSSCCEEEEESCHHHH-HHHHHHTBT
T ss_pred HHc------CCEEEEECccccCCe-E-CCe---eccCCC-CEEEEECCCCCcCCCcCceeEEEeCCHHHH-HHHHHHHhc
Confidence 999 999999999986542 1 111 111111 677766 5899866333566666544322 111110000
Q ss_pred CCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCC----CccEEEEEecC
Q 011057 307 LGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDE----GVPLVAFSLKD 382 (494)
Q Consensus 307 ~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~----~~~~v~f~~~~ 382 (494)
...........+.......+.+.+++..+ +.+++..++..++++++.+.|++++ +.+...+. ...++.+.+.
T Consensus 214 g~~~~~~~~~~g~~~~~~~~~aa~~~~~l--~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~- 289 (367)
T 3nyt_A 214 GQDRRYHHIRVGVNSRLDTLQAAILLPKL--EIFEEEIALRQKVAAEYDLSLKQVG-IGTPFIEVNNISVYAQYTVRMD- 289 (367)
T ss_dssp TEEETTEECSCCCBCCCCHHHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCTTEECCCSSEEEECS-
T ss_pred CCCcCceeeccCcCCCccHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccCC-eeccCCCCCCceeeEEEEEEeC-
Confidence 00000000000111111222233333322 3346677888889999999999986 55433221 1223344432
Q ss_pred CCCCCHHHHHHHHHhcCceeecccc-CCC----C------------CCceEEEEEeccCCChHHHHHHHHHHHH
Q 011057 383 NKRHDEFEVAELLRRFGWIVPAYTM-PAD----A------------QHITVLRVVIREDFSRTLAERLVLDITK 439 (494)
Q Consensus 383 ~~~~~~~~l~~~L~~~Gi~v~~~~~-~~~----~------------~~~~~lRvs~~~~~t~~~id~~i~~l~~ 439 (494)
+...+.++|.++||.++.+.. |.. . .....+|+.+...+|.+|++++++.|++
T Consensus 290 ----~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~ 359 (367)
T 3nyt_A 290 ----NRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTN 359 (367)
T ss_dssp ----SHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC
T ss_pred ----CHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence 577899999999998754332 110 0 0135799999999999999888776654
No 147
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.91 E-value=2.4e-23 Score=211.61 Aligned_cols=341 Identities=11% Similarity=0.026 Sum_probs=219.2
Q ss_pred CCCcccccc---c---CCChHHHHHHHHHHhccc-CCCCCCChhhHHHHHHHHHHHHHHhCC--CCCCCCCcceeeecCh
Q 011057 56 PRLNLASFV---T---TWMEPECDKLMMAAINKN-YVDMDEYPVTTELQNRCVNIIARLFNA--PLEDSETAVGVGTVGS 126 (494)
Q Consensus 56 ~~~~~~~~~---~---~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~--~~~~~~~~~~~~t~gg 126 (494)
..++|+.+. + +++.+.+.+++.++++.. ...|....+..++++.+.+++....+. ++ +...+++|+||
T Consensus 50 ~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~---~~~~i~~t~G~ 126 (420)
T 4f4e_A 50 TKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAA---GRVVTAQALGG 126 (420)
T ss_dssp SCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHT---TCEEEEEEEHH
T ss_pred CcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCcccccc---CceEEEECCcc
Confidence 345666652 2 233478999998888763 234555567788888877776554431 11 00158999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEec-cCCccccCHHHHHHhhh---hC
Q 011057 127 SEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKL-SEGYYVMDPVKAVEMVD---EN 202 (494)
Q Consensus 127 t~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~-~~~~~~~d~~~L~~~i~---~~ 202 (494)
++|+.+++.....- . .+++|+++.++|..+...++..|++++.+++ +++++.+|+++|+++++ ++
T Consensus 127 t~al~~~~~~~~~~--------~---~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~ 195 (420)
T 4f4e_A 127 TGALKIGADFLRTL--------N---PKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPG 195 (420)
T ss_dssp HHHHHHHHHHHHHH--------C---TTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHHHh--------C---CCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhCCCC
Confidence 99999885433210 0 1258999999999999999999999999998 34457899999999998 56
Q ss_pred CeEEEEeeCCCCcccc---cCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCccc-ccc-cCCCceEEEEcCcc
Q 011057 203 TICVAAILGSTLNGEF---EDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELE-WDF-RLPLVKSINVSGHK 277 (494)
Q Consensus 203 t~~vv~~~~~~~tG~~---~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~-~~~~~D~~~~~~hK 277 (494)
++++++++++||||.+ +++++|+++|+++ |+++++|++|+++......+... ..+ .....+++..+++|
T Consensus 196 ~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~------~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 269 (420)
T 4f4e_A 196 TIVVLHACCHNPTGVDLNDAQWAQVVEVVKAR------RLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSK 269 (420)
T ss_dssp CEEEEECSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTT
T ss_pred CEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC------CcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCc
Confidence 7899999999999998 4577899999999 99999999998764310000000 011 22345677788999
Q ss_pred cCC-cCCceEEEEEe--CCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHh-----cHhHHHHHHHHHHH
Q 011057 278 YGL-VYAGIGWVIWR--NKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRL-----GFEGYRNVMENCHE 349 (494)
Q Consensus 278 ~l~-~p~g~G~~~~~--~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l-----~~~g~~~~~~~~~~ 349 (494)
.+. ++.++|++++. ++..+.............. . ...+.....++...+... ..+.++++.+++.+
T Consensus 270 ~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 343 (420)
T 4f4e_A 270 SFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTN-----Y-SNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRA 343 (420)
T ss_dssp TTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTT-----T-SSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcc-----c-CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 886 57779998752 2211111000000000000 0 111112222222222111 13446777888889
Q ss_pred HHHHHHHHHhhC---CCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCC
Q 011057 350 NAMVLKEGLEKT---GRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFS 426 (494)
Q Consensus 350 ~a~~l~~~L~~~---~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t 426 (494)
+++++.+.|+++ +++++..+. .+++.|. +++...+.+.|.++|+.+.. + .|+++. ..+
T Consensus 344 ~~~~l~~~L~~~~~~~~~~~~~~~--~g~~~~~-----~~~~~~~~~~l~~~gI~v~~--------~---~Ris~~-~~~ 404 (420)
T 4f4e_A 344 MRNGLVERLKAAGIERDFSFINAQ--RGMFSYS-----GLTSAQVDRLREEFGIYAVS--------T---GRICVA-ALN 404 (420)
T ss_dssp HHHHHHHHHHHTTCSSCCTHHHHS--CSSEEEC-----CCCHHHHHHHHHHHCEECCT--------T---SEEEGG-GCC
T ss_pred HHHHHHHHHHhcCCCCCceeECCC--ccEEEEe-----CCCHHHHHHHHHhCCEEecC--------C---CeEEEe-cCC
Confidence 999999999987 346555443 3444442 13556777888899998633 1 299986 346
Q ss_pred hHHHHHHHHHHHHHH
Q 011057 427 RTLAERLVLDITKVL 441 (494)
Q Consensus 427 ~~~id~~i~~l~~~~ 441 (494)
.++++++++.|++++
T Consensus 405 ~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 405 TRNLDVVANAIAAVL 419 (420)
T ss_dssp TTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 778999998888765
No 148
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.91 E-value=7.1e-23 Score=208.21 Aligned_cols=348 Identities=13% Similarity=0.045 Sum_probs=217.7
Q ss_pred CCcccccccCC----ChHHHHHHHH--HHhccc--CCCC-CCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChh
Q 011057 57 RLNLASFVTTW----MEPECDKLMM--AAINKN--YVDM-DEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSS 127 (494)
Q Consensus 57 ~~~~~~~~~~~----~~p~~~~~~~--~~~~~~--~~~~-~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt 127 (494)
.++|+.+.+.+ .++.+.+++. +++... ...| ...++..+++ +.++++++.++ ..+++|+|++
T Consensus 27 ~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr----~~ia~~~~~~~-----~~i~~t~G~~ 97 (423)
T 3ez1_A 27 NLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSAR----ALFAGYLDVKA-----ENVLVWNNSS 97 (423)
T ss_dssp CEESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHH----HHHHHHTTSCG-----GGEEECSSCH
T ss_pred eEecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHH----HHHHHHhCCCh-----hhEEEeCCcH
Confidence 35666665551 2335666553 444321 1334 4444555555 55888888865 4699999999
Q ss_pred HHHH--HHHHHHHH--HHHHHHHhcCCC--C--CCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhh
Q 011057 128 EAIM--LAGLAFKR--KWQNKRKAEGKP--F--DKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMV 199 (494)
Q Consensus 128 ~a~~--~a~~a~~~--~~~~~~~~~g~~--~--~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i 199 (494)
+++. +++.++.. . |.. . .+++|+++.++|..+...++..|++++.++++++ .+|+++|++++
T Consensus 98 ~al~~~~~~~~l~~~~~--------g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~--g~d~~~l~~~l 167 (423)
T 3ez1_A 98 LELQGLVLTFALLHGVR--------GSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQSD--GPDVDAVERLA 167 (423)
T ss_dssp HHHHHHHHHHHHHTCCT--------TCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT--EECHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCC--------CccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccCCCC--CCCHHHHHHHH
Confidence 9997 66666532 1 000 0 0268999999999999999999999999999875 49999999999
Q ss_pred --hhCCeEEEEe-eCCCCcccccCHH---HHHHHH-HHhhcccCCCceEEEecccccccccc-cCCcc-c-ccc----cC
Q 011057 200 --DENTICVAAI-LGSTLNGEFEDVK---LLNDLL-AEKNKETGWDTPIHVDAASGGFIAPF-LYPEL-E-WDF----RL 265 (494)
Q Consensus 200 --~~~t~~vv~~-~~~~~tG~~~~l~---~I~~la-~~~~~~~~~~~~l~vD~a~~~~~~~~-~~~~~-~-~~~----~~ 265 (494)
.+++++|+++ +++||||.+.+.+ +|+++| +++ ++++++|++|+...... ..+.. . ..+ ..
T Consensus 168 ~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~------~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (423)
T 3ez1_A 168 GTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAP------DFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGY 241 (423)
T ss_dssp HSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSST------TCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTC
T ss_pred hhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhcc------CCEEEEECCcchhhcCCCCCCCCcchhhhhhccCC
Confidence 4677888655 7899999998877 788888 888 99999999998532110 00000 0 011 12
Q ss_pred CCceEEEEcCcccCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHH-hc--HhHHHH
Q 011057 266 PLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIR-LG--FEGYRN 342 (494)
Q Consensus 266 ~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~-l~--~~g~~~ 342 (494)
.+.+++..+++|+++++.++|+++.++. .+ ..+........ ...+.....++..++.. .+ .+.+++
T Consensus 242 ~~~~i~~~S~sK~~~~G~r~G~~~~~~~-~~-~~~~~~~~~~~---------~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 310 (423)
T 3ez1_A 242 PDRAFVFASTSKITFAGAGLGFVASSED-NI-RWLSKYLGAQS---------IGPNKVEQARHVKFLTEYPGGLEGLMRD 310 (423)
T ss_dssp TTSEEEEEESTTTSCSSSSCEEEEECHH-HH-HHHHHHHHHSC---------SCCCHHHHHHHHHHHHHSTTHHHHHHHH
T ss_pred CCeEEEEeCchhhccCCcceEEEEeCHH-HH-HHHHHHHhhhc---------cCCCHHHHHHHHHHHHhccchHHHHHHH
Confidence 3567888899999888899999887542 22 11111100000 11111222222233332 11 122333
Q ss_pred HHHHHHHHHHHHHHHH----hhCC-CeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeec-ccc-C-CCCCCc
Q 011057 343 VMENCHENAMVLKEGL----EKTG-RFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPA-YTM-P-ADAQHI 414 (494)
Q Consensus 343 ~~~~~~~~a~~l~~~L----~~~~-~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~-~~~-~-~~~~~~ 414 (494)
..+.+.++.+.+.+.| .+++ ++++..+. ...++.+.+... +...+.+.|.++|+.+.. ... + ....+.
T Consensus 311 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~-~g~~~~~~~~~~---~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~ 386 (423)
T 3ez1_A 311 HAAIIAPKFRAVDEVLRAELGEGGEYATWTLPK-GGYFISLDTAEP---VADRVVKLAEAAGVSLTPAGATYPAGQDPHN 386 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCS-BSSCEEEEESSS---CHHHHHHHHHHTTEECCCTTTTSSTTCCSSS
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCC-ccEEEEEECCCC---cHHHHHHHHHHCCcEEecCcccccCCCCCCC
Confidence 3444444444444444 4454 46665443 455777777542 678899999999998754 211 1 111345
Q ss_pred eEEEEEeccCCChHHHHHHHHHHHHHHHHHh
Q 011057 415 TVLRVVIREDFSRTLAERLVLDITKVLHELD 445 (494)
Q Consensus 415 ~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~ 445 (494)
.++|+++... +.++++.+++.|+++++++.
T Consensus 387 ~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~ 416 (423)
T 3ez1_A 387 RNLRLAPTRP-PVEEVRTAMQVVAACIRLAT 416 (423)
T ss_dssp CEEEECCSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 7899999644 89999999999999888765
No 149
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.91 E-value=4e-23 Score=209.53 Aligned_cols=333 Identities=14% Similarity=0.088 Sum_probs=214.4
Q ss_pred ChHHHHHHHHHHhcccC-CC------CCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHH
Q 011057 68 MEPECDKLMMAAINKNY-VD------MDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRK 140 (494)
Q Consensus 68 ~~p~~~~~~~~~~~~~~-~~------~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~ 140 (494)
.+|.+.+++.+.+.... .. +........+++.+++++++++|.+. . .+++++|++|+..++.++..+
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----~-~v~~~sGs~a~~~a~~~~~~~ 115 (420)
T 3gbx_A 42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADY-----A-NVQPHSGSQANFAVYTALLQP 115 (420)
T ss_dssp CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSE-----E-ECCCSSHHHHHHHHHHHHCCT
T ss_pred CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCC-----c-eeEecCcHHHHHHHHHHhcCC
Confidence 47889999888774322 11 11122334667777899999999964 2 333455689998887776321
Q ss_pred HHHHHHhcCCCCCCCeEEeCCCcchHHH---HHHHHcCCe--eEEEeccCCccccCHHHHHHhhhh-CCeEEEEeeCCCC
Q 011057 141 WQNKRKAEGKPFDKPNIVTGANVQVCWE---KFARYFEVE--LKEVKLSEGYYVMDPVKAVEMVDE-NTICVAAILGSTL 214 (494)
Q Consensus 141 ~~~~~~~~g~~~~~~~vi~~~~~h~s~~---~~~~~~G~~--v~~v~~~~~~~~~d~~~L~~~i~~-~t~~vv~~~~~~~ 214 (494)
+++|+++.++|.++. ......|.. ...++.++ ++.+|+++|++++++ ++++|+++.++++
T Consensus 116 -------------gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~v~~~~~~~~ 181 (420)
T 3gbx_A 116 -------------GDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDE-SGKIDYDEMAKLAKEHKPKMIIGGFSAYS 181 (420)
T ss_dssp -------------TCEEEEEEEC------------CHHHHSEEEEEEECT-TCSCCHHHHHHHHHHHCCSEEEECCTTCC
T ss_pred -------------CCEEEecchhhcceeccchhhhhcccceeEEeccCCc-cCCcCHHHHHHHHHhcCCeEEEEecCccC
Confidence 368999999997733 222233443 44555564 478999999999987 5888888877764
Q ss_pred cccccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCC-
Q 011057 215 NGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNK- 293 (494)
Q Consensus 215 tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~- 293 (494)
...|+++|.++|+++ |+++++|++|+.+.. ........ ...+|+++.++||++.+|.| |+++.++.
T Consensus 182 --~~~~l~~l~~l~~~~------~~~li~De~~~~~~~--~~~~~~~~--~~~~di~~~s~sK~~~g~~g-g~~~~~~~~ 248 (420)
T 3gbx_A 182 --GVVDWAKMREIADSI------GAYLFVDMAHVAGLI--AAGVYPNP--VPHAHVVTTTTHKTLAGPRG-GLILAKGGD 248 (420)
T ss_dssp --SCCCHHHHHHHHHHT------TCEEEEECTTTHHHH--HTTSSCCS--TTTSSEEEEESSGGGCSCSC-EEEEESSCC
T ss_pred --CccCHHHHHHHHHHc------CCEEEEECCcchhce--ecccCCcc--cccCCEEEeecccCCCCCCc-eEEEEcCCc
Confidence 578899999999999 999999999875432 11111111 23489999999999876665 77776542
Q ss_pred -CCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCC
Q 011057 294 -EDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEG 372 (494)
Q Consensus 294 -~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~ 372 (494)
... ..+... .+. + ..++.+.....++.+++.....++++++.++..++++++.+.|++.+ ++++.++..
T Consensus 249 ~~~~-~~~~~~-~~~-~------~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~ 318 (420)
T 3gbx_A 249 EELY-KKLNSA-VFP-S------AQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNRG-YKVVSGGTE 318 (420)
T ss_dssp HHHH-HHHHHH-HC-----------CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCS
T ss_pred HHHH-HHhhhh-cCC-C------CCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC-CeeccCCCC
Confidence 111 111100 010 0 01233334455555566555556678889999999999999999865 888764335
Q ss_pred ccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCC---CCCceEEEEEeccC----CChHHHHHHHHHHHHHHHHH
Q 011057 373 VPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPAD---AQHITVLRVVIRED----FSRTLAERLVLDITKVLHEL 444 (494)
Q Consensus 373 ~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~---~~~~~~lRvs~~~~----~t~~~id~~i~~l~~~~~~l 444 (494)
.+++.+.+.+ .+.+...+.+.|.++|+.+.....|.. ..+...+|+++... .++++++++++.|+++++..
T Consensus 319 ~~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 396 (420)
T 3gbx_A 319 NHLFLLDLVD-KNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDNI 396 (420)
T ss_dssp SSEEEEECGG-GTCCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCC-CCCCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhCc
Confidence 6677777643 245678899999999999865332211 12334599998643 45789999999888887653
No 150
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.91 E-value=8.5e-23 Score=205.67 Aligned_cols=321 Identities=13% Similarity=-0.001 Sum_probs=210.2
Q ss_pred CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHH
Q 011057 67 WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRK 146 (494)
Q Consensus 67 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~ 146 (494)
+++|.+.+++.+++.........+ ......++++++++++|.+. ..+++|+||++|+.+++.+++...
T Consensus 61 ~~~~~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~~~~~-----~~v~~~~gg~~a~~~al~~~~~~~----- 128 (395)
T 1vef_A 61 HGNPEVVEAVKRQAETLMAMPQTL--PTPMRGEFYRTLTAILPPEL-----NRVFPVNSGTEANEAALKFARAHT----- 128 (395)
T ss_dssp BTCHHHHHHHHHHHHHCCCCCTTS--CCHHHHHHHHHHHHTSCTTE-----EEEEEESSHHHHHHHHHHHHHHHH-----
T ss_pred CCCHHHHHHHHHHHHhCCCCcccc--CCHHHHHHHHHHHHhcCCCc-----CEEEEcCcHHHHHHHHHHHHHHHh-----
Confidence 356888888888876532211112 23456678888999997643 358999999999999888764210
Q ss_pred hcCCCCCCCeEEeCCC-cchHHHHHHHHcCCeeEE---EeccCCc---cccCHHHHHHhhhhCCeEEEEeeCCCCccccc
Q 011057 147 AEGKPFDKPNIVTGAN-VQVCWEKFARYFEVELKE---VKLSEGY---YVMDPVKAVEMVDENTICVAAILGSTLNGEFE 219 (494)
Q Consensus 147 ~~g~~~~~~~vi~~~~-~h~s~~~~~~~~G~~v~~---v~~~~~~---~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~ 219 (494)
. +++|+++++ .|.++..++...|.++.. +|+..+. ...|+++|++++++++++|+++.++++||.+.
T Consensus 129 -~-----~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~ 202 (395)
T 1vef_A 129 -G-----RKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDEETAAVILEPVQGEGGVRP 202 (395)
T ss_dssp -S-----CCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSEE
T ss_pred -C-----CCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHhccCEEEEEEeCccCCCCccC
Confidence 1 246666555 455666666666765211 1111110 02589999999988888888777778899987
Q ss_pred C----HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCC
Q 011057 220 D----VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKED 295 (494)
Q Consensus 220 ~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~ 295 (494)
| +++|.++|+++ |+++++|++|+++. ........+......|+++ ++|++.++.++|+++++++ .
T Consensus 203 ~~~~~l~~i~~l~~~~------~~~li~Dea~~~~~--~~g~~~~~~~~~~~~d~~s--~sK~~~~g~~~G~~~~~~~-~ 271 (395)
T 1vef_A 203 ATPEFLRAAREITQEK------GALLILDEIQTGMG--RTGKRFAFEHFGIVPDILT--LAKALGGGVPLGVAVMREE-V 271 (395)
T ss_dssp CCHHHHHHHHHHHHHH------TCEEEEECTTTTTT--TTSSSSTHHHHTCCCSEEE--ECGGGGTTSSCEEEEEEHH-H
T ss_pred CCHHHHHHHHHHHHHc------CCEEEEEecccCCc--cCCchhHhhhcCCCCCEEE--EcccccCCCceEEEEehHH-H
Confidence 7 99999999999 99999999998531 1111111111112467764 4899888888999998764 2
Q ss_pred cccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEee-cCCCcc
Q 011057 296 LPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVS-KDEGVP 374 (494)
Q Consensus 296 ~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~-~~~~~~ 374 (494)
+ +.+.. .. . . ...+.+.....++.++++.+.. .+..++..++++++.+.|++++. +++. .+...+
T Consensus 272 ~-~~l~~--~~---~--~--~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~g~ 337 (395)
T 1vef_A 272 A-RSMPK--GG---H--G--TTFGGNPLAMAAGVAAIRYLER---TRLWERAAELGPWFMEKLRAIPS-PKIREVRGMGL 337 (395)
T ss_dssp H-HTSCT--TS---S--C--CSSTTCHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCC-TTEEEEEEETT
T ss_pred H-hhhcc--CC---c--C--CCcCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHhhc-CceEEEEEEEE
Confidence 2 21111 00 0 0 1122333444455566665543 34677888899999999998863 2111 111346
Q ss_pred EEEEEecCCCCCCHHHHHHHHH-hcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHH
Q 011057 375 LVAFSLKDNKRHDEFEVAELLR-RFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVL 441 (494)
Q Consensus 375 ~v~f~~~~~~~~~~~~l~~~L~-~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~ 441 (494)
++.+.+.. +..++.++|. ++|+.+... +..++|++++..+++++++++++.|++++
T Consensus 338 ~~~~~~~~----~~~~l~~~l~~~~gi~v~~~-------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 338 MVGLELKE----KAAPYIARLEKEHRVLALQA-------GPTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp EEEEEESS----CSHHHHHHHHHHHCEECEES-------STTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEcC----hHHHHHHHHHHHCCeEEecC-------CCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 88888753 2568999999 999987541 34579999888889999999999888765
No 151
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.91 E-value=2.1e-22 Score=203.00 Aligned_cols=319 Identities=13% Similarity=0.007 Sum_probs=213.2
Q ss_pred ChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 011057 68 MEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA 147 (494)
Q Consensus 68 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~ 147 (494)
.+|.+.+++.++++........+ ......++++++++++|.+ .+++|+||++|+..++.+++.....
T Consensus 57 ~~~~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~g~~-------~v~~~~gg~~a~~~al~~~~~~~~~---- 123 (397)
T 2ord_A 57 SHPRLVEAIKDQAEKLIHCSNLF--WNRPQMELAELLSKNTFGG-------KVFFANTGTEANEAAIKIARKYGKK---- 123 (397)
T ss_dssp TCHHHHHHHHHHHHHCSCCCTTS--EEHHHHHHHHHHHHTTTSC-------EEEEESSHHHHHHHHHHHHHHHHHH----
T ss_pred CCHHHHHHHHHHHHhcccCcccc--CCHHHHHHHHHHHHhcCCC-------eEEEeCCHHHHHHHHHHHHHHHhhc----
Confidence 46888888888876532211112 2345667888899999853 3899999999999988877532110
Q ss_pred cCCCCCCCeEEeCC-CcchHHHHHHHHcCCe------------eEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCC
Q 011057 148 EGKPFDKPNIVTGA-NVQVCWEKFARYFEVE------------LKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTL 214 (494)
Q Consensus 148 ~g~~~~~~~vi~~~-~~h~s~~~~~~~~G~~------------v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~ 214 (494)
+ ...+++|++.+ ..|.++..+++..|.+ ++.++. .|+++|++++++++++|+++.++||
T Consensus 124 -~-~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~------~d~~~l~~~l~~~~~~v~~~~~~np 195 (397)
T 2ord_A 124 -K-SEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF------NNVEDLRRKMSEDVCAVFLEPIQGE 195 (397)
T ss_dssp -H-CTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT------TCHHHHHHHCCTTEEEEEECSEECT
T ss_pred -C-CCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC------CCHHHHHHHhhcCeEEEEEecccCC
Confidence 0 00124566554 4566666677777876 566653 3899999999888999999999999
Q ss_pred ccc----ccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccc-cccCCCceEEEEcCcccCCcCCceEEEE
Q 011057 215 NGE----FEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEW-DFRLPLVKSINVSGHKYGLVYAGIGWVI 289 (494)
Q Consensus 215 tG~----~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~hK~l~~p~g~G~~~ 289 (494)
||. .+++++|.++|+++ |+++++|++|+++.. ....... .++. ..|++++ +|++.++.++|+++
T Consensus 196 tG~~~~~~~~l~~l~~l~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~-~~d~~s~--sK~~~~G~r~G~~~ 264 (397)
T 2ord_A 196 SGIVPATKEFLEEARKLCDEY------DALLVFDEVQCGMGR--TGKLFAYQKYGV-VPDVLTT--AKGLGGGVPIGAVI 264 (397)
T ss_dssp TTCEECCHHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSHHHHHTC-CCSEEEE--CGGGGTTSCCEEEE
T ss_pred CCcccCCHHHHHHHHHHHHHc------CCEEEEEecccCCcc--CccchhhhhhCC-CCCeeee--ccccCCCcCeEEEE
Confidence 999 37899999999999 999999999985321 1111110 1121 3676654 69988778899998
Q ss_pred EeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCC-CeEEe-
Q 011057 290 WRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTG-RFNIV- 367 (494)
Q Consensus 290 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~-~~~~~- 367 (494)
++++ .. .+.. . .. ..+ .+.+.....++.++++.+.. ++..++..++++++.+.|++++ ++.++
T Consensus 265 ~~~~-~~--~l~~--~---~~--~~~--~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 329 (397)
T 2ord_A 265 VNER-AN--VLEP--G---DH--GTT--FGGNPLACRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQEMKEEYDVVA 329 (397)
T ss_dssp ECST-TC--CCCT--T---SS--CCS--STTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHCTTEE
T ss_pred EchH-hc--ccCC--C---Cc--CCC--CCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCceE
Confidence 8764 22 2111 0 00 011 22233444455556655543 3567778888889998887752 12211
Q ss_pred -ecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHH
Q 011057 368 -SKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHE 443 (494)
Q Consensus 368 -~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~ 443 (494)
.++ ..+++.+.+.. ..+..++.++|.++|+.+... +..++|++++...++++++++++.|++++++
T Consensus 330 ~~~~-~g~~~~~~~~~--~~~~~~l~~~l~~~gi~v~~~-------~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 396 (397)
T 2ord_A 330 DVRG-MGLMIGIQFRE--EVSNREVATKCFENKLLVVPA-------GNNTIRFLPPLTVEYGEIDLAVETLKKVLQG 396 (397)
T ss_dssp EEEE-ETTEEEEEECT--TSCHHHHHHHHHHTTEECEEE-------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEE-EeEEEEEEECC--hHHHHHHHHHHHHCCCEEccC-------CCCEEEEECCcCCCHHHHHHHHHHHHHHHhh
Confidence 122 34678888743 246789999999999987542 2457999987788999999999999888753
No 152
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.91 E-value=7.3e-23 Score=208.42 Aligned_cols=316 Identities=15% Similarity=0.066 Sum_probs=205.9
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHH--HHHHHHHHHHHHHHHhcCC--CC---CCCeEE
Q 011057 86 DMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIM--LAGLAFKRKWQNKRKAEGK--PF---DKPNIV 158 (494)
Q Consensus 86 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~--~a~~a~~~~~~~~~~~~g~--~~---~~~~vi 158 (494)
.|....+..+++ +.+++++++++ ..+++|+|+++++. +++.++.... .|. .. .+++|+
T Consensus 73 ~Y~~~~g~~~lr----~~ia~~~~~~~-----~~i~~t~G~~~al~~~~~~~~l~~~~------~g~~~~~~~~~gd~V~ 137 (427)
T 3ppl_A 73 NYGGLDGIVDIR----QIWADLLGVPV-----EQVLAGDASSLNIMFDVISWSYIFGN------NDSVQPWSKEETVKWI 137 (427)
T ss_dssp SSCCSSCCHHHH----HHHHHHHTSCG-----GGEEECSSCHHHHHHHHHHHHHHHCC------TTCSSCGGGSSCCEEE
T ss_pred CCCCCCCcHHHH----HHHHHHhCCCc-----ceEEEeCCcHHHHHHHHHHHHHhccC------CcccccccCCCCCEEE
Confidence 344444555555 45777778765 46999999999994 5666553300 000 00 036899
Q ss_pred eCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhh-hCCeEEEEe-eCCCCcccccCHH---HHHHHH-HHhh
Q 011057 159 TGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVD-ENTICVAAI-LGSTLNGEFEDVK---LLNDLL-AEKN 232 (494)
Q Consensus 159 ~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~-~~t~~vv~~-~~~~~tG~~~~l~---~I~~la-~~~~ 232 (494)
++.++|..+...++..|++++.+|++++ + +|+++|++++. +++++|+++ +++||||.+.|.+ +|+++| +++
T Consensus 138 v~~p~y~~~~~~~~~~g~~~~~v~~~~~-g-~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~- 214 (427)
T 3ppl_A 138 CPVPGYDRHFSITERFGFEMISVPMNED-G-PDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAP- 214 (427)
T ss_dssp EEESCCHHHHHHHHHTTCEEEEEEEETT-E-ECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSST-
T ss_pred EcCCCcHHHHHHHHHcCCEEEEeCCCCC-C-CCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcC-
Confidence 9999999999999999999999999875 3 99999999995 567777765 7899999998877 788888 889
Q ss_pred cccCCCceEEEecccccccccccCCc-c--c-ccc----cCCCceEEEEcCcccCCcCCceEEEEEeCCCCccccccccc
Q 011057 233 KETGWDTPIHVDAASGGFIAPFLYPE-L--E-WDF----RLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHI 304 (494)
Q Consensus 233 ~~~~~~~~l~vD~a~~~~~~~~~~~~-~--~-~~~----~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~ 304 (494)
++++|+|++|+.+.. .... . . ..+ ...+.+++..+++|+++++.++|+++.... .+ ..+....
T Consensus 215 -----~~~ii~De~y~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~-l~-~~~~~~~ 285 (427)
T 3ppl_A 215 -----DFRVVWDNAYAVHTL--TDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSAE-NR-KWYTGHA 285 (427)
T ss_dssp -----TCEEEEECTTTTCBS--SSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCHH-HH-HHHHHHH
T ss_pred -----CCEEEEECCCccccc--CCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCHH-HH-HHHHHHh
Confidence 999999999987432 1111 0 0 011 123567888899999888889998876432 21 1111100
Q ss_pred CCCCCCCCCcccccCcchHHHHHHHHHHHHhcH-----hHHHHHHHHHHHHHHHHHHHHhh----CCCeEEeecCCCccE
Q 011057 305 NYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGF-----EGYRNVMENCHENAMVLKEGLEK----TGRFNIVSKDEGVPL 375 (494)
Q Consensus 305 ~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~-----~g~~~~~~~~~~~a~~l~~~L~~----~~~~~~~~~~~~~~~ 375 (494)
.+.. .. ...+.+.++...+.. ..+++..+.+.++++++.+.|.+ ++++++..+. ...+
T Consensus 286 ~~~~---------~~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~-~g~~ 352 (427)
T 3ppl_A 286 GIRG---------IG---PNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPA-GGYF 352 (427)
T ss_dssp HHHC---------SC---CCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCS-BSSC
T ss_pred hccc---------CC---CCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCC-ccEE
Confidence 0000 01 122333444444432 22344455555555666666543 4446655443 4556
Q ss_pred EEEEecCCCCCCHHHHHHHHHhcCceeec-cc-cCC-CCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHHh
Q 011057 376 VAFSLKDNKRHDEFEVAELLRRFGWIVPA-YT-MPA-DAQHITVLRVVIREDFSRTLAERLVLDITKVLHELD 445 (494)
Q Consensus 376 v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~-~~-~~~-~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~ 445 (494)
+.+.++.. +..++.+.|.++|+.+.. .. ++. ...+..++|+++... +.++++.+++.|+++++++.
T Consensus 353 ~~~~~~~~---~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~~~~ 421 (427)
T 3ppl_A 353 ISLDVVPG---TASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLP-PVEELEVAMDGVATCVLLAA 421 (427)
T ss_dssp EEEECSTT---CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCcc---hHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 77777532 678899999999998754 11 111 112457899999644 88999999999998887664
No 153
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.91 E-value=2.6e-22 Score=202.74 Aligned_cols=287 Identities=17% Similarity=0.101 Sum_probs=200.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHH----HH
Q 011057 96 LQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEK----FA 171 (494)
Q Consensus 96 le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~----~~ 171 (494)
..+++++++++++|.+. .++++||++|+.+++.++.. .+++|+++.+.|.++.. .+
T Consensus 63 ~~~~l~~~ia~~~g~~~-------~i~~~~g~~ai~~~~~~l~~-------------~gd~Vl~~~~~y~~~~~~~~~~~ 122 (404)
T 1e5e_A 63 TVSNLEGKIAFLEKTEA-------CVATSSGMGAIAATVLTILK-------------AGDHLISDECLYGCTHALFEHAL 122 (404)
T ss_dssp HHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHCC-------------TTCEEEEESCCCHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhCCCc-------EEEeCChHHHHHHHHHHHhC-------------CCCEEEEeCCCchhHHHHHHHHH
Confidence 34457777999999853 78888999999988877632 12689999999998877 77
Q ss_pred HHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHHHHH-hhcccCCCceEEEecccccc
Q 011057 172 RYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAE-KNKETGWDTPIHVDAASGGF 250 (494)
Q Consensus 172 ~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~la~~-~~~~~~~~~~l~vD~a~~~~ 250 (494)
+..|++++.++++ |+++|+++++++|++|++++++||||.+.|+++|+++|++ + |+++++|++|+.+
T Consensus 123 ~~~g~~~~~v~~~------d~~~l~~~i~~~t~~v~l~~p~NptG~v~~l~~i~~la~~~~------~~~li~De~~~~~ 190 (404)
T 1e5e_A 123 TKFGIQVDFINTA------IPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQE------GVLVIADNTFCSP 190 (404)
T ss_dssp HHTTCEEEEECTT------STTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTST------TCEEEEECTTTCT
T ss_pred HHcCCEEEEECCC------CHHHHHHhcCCCCcEEEEECCCCCCCcccCHHHHHHHHHhhc------CCEEEEECCCchh
Confidence 8899999998864 6789999999899999999999999999999999999999 9 9999999999986
Q ss_pred cccccCCcccccccCCCceEEEEcCcccCCcCCc--eEEEEEeCCCCcccccccccCCC-CCCCCCcccccCcchHHHHH
Q 011057 251 IAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAG--IGWVIWRNKEDLPEELIFHINYL-GADQPTFTLNFSKGSSQVIA 327 (494)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~G~~~~~~~~~~~~~~~~~~~y~-~~~~~~~~~~~s~~~~~~~a 327 (494)
.. ..+ .. .++|++..+++|++++|.+ +|+++++++ .+...+.....+. + +. ...+.
T Consensus 191 ~~--~~~---~~---~~~di~~~S~sK~~~~~g~ri~G~~~~~~~-~~~~~l~~~~~~~~g---------~~---~~~~~ 249 (404)
T 1e5e_A 191 MI--TNP---VD---FGVDVVVHSATKYINGHTDVVAGLICGKAD-LLQQIRMVGIKDITG---------SV---ISPHD 249 (404)
T ss_dssp TT--CCG---GG---GTCSEEEEETTTTTTCSSCCCCEEEEECHH-HHHHHHHTCCCCCCC---------CC---CCHHH
T ss_pred hh--CCc---cc---cCCEEEEEcCccccCCCCCCeEEEEEECHH-HHHHHHHHHHHhCCC---------CC---CCHHH
Confidence 52 111 11 2689999999999877655 588887653 2221211111111 1 11 12234
Q ss_pred HHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeE-EeecC---------------CCccEEEEEecCCCCCCHHHH
Q 011057 328 QYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFN-IVSKD---------------EGVPLVAFSLKDNKRHDEFEV 391 (494)
Q Consensus 328 ~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~-~~~~~---------------~~~~~v~f~~~~~~~~~~~~l 391 (494)
+++++..+.. +..+.++..+++.++.+.|++.+.+. ++.+. ...++++|.+.+ ...++
T Consensus 250 ~~~~~~~l~~--~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~----~~~~~ 323 (404)
T 1e5e_A 250 AWLITRGLST--LNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS----GFEGA 323 (404)
T ss_dssp HHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT----HHHHH
T ss_pred HHHHHHhHhH--HHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCC----CHHHH
Confidence 5555555532 34566677778888888888776443 22211 126789998743 13456
Q ss_pred HHHHHhcCceeecccc---------CCC------------CCC--ceEEEEEeccCCChHHHHHHHHHHHHHHHHHh
Q 011057 392 AELLRRFGWIVPAYTM---------PAD------------AQH--ITVLRVVIREDFSRTLAERLVLDITKVLHELD 445 (494)
Q Consensus 392 ~~~L~~~Gi~v~~~~~---------~~~------------~~~--~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~ 445 (494)
.+.|.+.|+++++..+ |.. ..+ ..++|++++. +++++++++|+++++.+-
T Consensus 324 ~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~al~~~~ 396 (404)
T 1e5e_A 324 KKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQGLDALL 396 (404)
T ss_dssp HHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHHHHH
Confidence 6677788886544211 100 012 4689999984 789999999999887543
No 154
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.91 E-value=2.6e-23 Score=209.53 Aligned_cols=325 Identities=11% Similarity=-0.006 Sum_probs=209.7
Q ss_pred hHHHHHHHHH-Hhccc-CCCCCCChhhHHHHHHHHHHHHHHhCC--CCCCCCCc--ceeeecChhHHHHHHHHHHHHHHH
Q 011057 69 EPECDKLMMA-AINKN-YVDMDEYPVTTELQNRCVNIIARLFNA--PLEDSETA--VGVGTVGSSEAIMLAGLAFKRKWQ 142 (494)
Q Consensus 69 ~p~~~~~~~~-~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~--~~~~~~~~--~~~~t~ggt~a~~~a~~a~~~~~~ 142 (494)
+|.+.+++.+ ++... ...|....+..++++++.+++....+. ++ . .+++|+|+++|+.+++.....-
T Consensus 46 ~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~-----~~~~i~~t~g~~~a~~~~~~~~~~~-- 118 (397)
T 3fsl_A 46 LQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQ-----QRVATIQTLGGSGALKVGADFLKRY-- 118 (397)
T ss_dssp CHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHT-----TCEEEEEESHHHHHHHHHHHHHHHH--
T ss_pred cHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccc-----cceEEEEcCCcHHHHHHHHHHHHhc--
Confidence 4789999988 87653 234555567778877766666554331 22 2 5899999999999885433211
Q ss_pred HHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEecc-CCccccCHHHHHHhhh---hCCeEEEEeeCCCCcccc
Q 011057 143 NKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLS-EGYYVMDPVKAVEMVD---ENTICVAAILGSTLNGEF 218 (494)
Q Consensus 143 ~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~-~~~~~~d~~~L~~~i~---~~t~~vv~~~~~~~tG~~ 218 (494)
. .+++|+++.++|..+...++..|++++.+++. ++++.+|+++|++++. ++++++++++++||||.+
T Consensus 119 ------~---~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~ 189 (397)
T 3fsl_A 119 ------F---PESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGAD 189 (397)
T ss_dssp ------C---TTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCC
T ss_pred ------C---CCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcC
Confidence 0 12579999999999999999999999999983 3347899999999998 567888889999999999
Q ss_pred ---cCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCccc-ccc-cCCCceEEEEcCcccCC-cCCceEEEEEeC
Q 011057 219 ---EDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELE-WDF-RLPLVKSINVSGHKYGL-VYAGIGWVIWRN 292 (494)
Q Consensus 219 ---~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~-~~~~~D~~~~~~hK~l~-~p~g~G~~~~~~ 292 (494)
+++++|+++|+++ ++++++|++|+.+......+... ..+ ......++..+++|.+. ++.++|++++..
T Consensus 190 ~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~riG~~~~~~ 263 (397)
T 3fsl_A 190 LTNDQWDAVIEILKAR------ELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMC 263 (397)
T ss_dssp CCHHHHHHHHHHHHHT------TCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCCEEEEEEC
T ss_pred CCHHHHHHHHHHHHhC------CEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcCCCeeEEEEec
Confidence 5566999999999 99999999998764310000000 011 12344566778889875 567789987632
Q ss_pred C--CCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHH--h---cHhHHHHHHHHHHHHHHHHHHHHhhCC---
Q 011057 293 K--EDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIR--L---GFEGYRNVMENCHENAMVLKEGLEKTG--- 362 (494)
Q Consensus 293 ~--~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~--l---~~~g~~~~~~~~~~~a~~l~~~L~~~~--- 362 (494)
. ..+.........+.... . ...+.....++...+.. + ..+.+++..+++.++++++.+.|++++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 337 (397)
T 3fsl_A 264 EDAEAAGRVLGQLKATVRRN-----Y-SSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPER 337 (397)
T ss_dssp SSHHHHHHHHHHHHHHHHTT-----T-SSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred CCHHHHHHHHHHHHHHHHhc-----c-CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 2 11111100000000000 0 11111111212222211 0 134567788888999999999999874
Q ss_pred CeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHH
Q 011057 363 RFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKV 440 (494)
Q Consensus 363 ~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~ 440 (494)
++++..+. .+++.|. +.+...+.+.|.++|+.+.. . + |+++.. ++.++++++++.|+++
T Consensus 338 ~~~~~~~~--~~~~~~~-----~~~~~~~~~~l~~~gi~v~~----g---~----Ris~~~-~~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 338 NFDYLLNQ--RGMFSYT-----GLSAAQVDRLREEFGVYLIA----S---G----RMCVAG-LNTANVQRVAKAFAAV 396 (397)
T ss_dssp CCTHHHHC--CSSEEEC-----CCCHHHHHHHHHTTCEECCT----T---C----EEEGGG-CCTTTHHHHHHHHHHH
T ss_pred CceeecCC--ceEEEec-----CCCHHHHHHHHHhCCEEECC----C---C----eEEEEe-cCHhhHHHHHHHHHhh
Confidence 46654442 3333332 12456777888899998632 1 1 898864 4667799988888765
No 155
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.91 E-value=6.1e-23 Score=202.05 Aligned_cols=297 Identities=13% Similarity=0.088 Sum_probs=206.0
Q ss_pred CChHHHHHHHHHHhccc-CCCCCCChhhHHHHHHHHHHHHHHhC---CCCCCCCCcceeeecChhHHHHHHHHHHHHHHH
Q 011057 67 WMEPECDKLMMAAINKN-YVDMDEYPVTTELQNRCVNIIARLFN---APLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQ 142 (494)
Q Consensus 67 ~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g---~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~ 142 (494)
++++.+.+++.+++... ...|.. ++.. ++++.++++++ .++ ..+++|+|+++++.+++.++ .
T Consensus 32 ~~~~~v~~a~~~~~~~~~~~~y~~-~~~~----~lr~~la~~~~~~~~~~-----~~v~~~~G~~~al~~~~~~~-g--- 97 (335)
T 1uu1_A 32 PFPEDLVDEVFRRLNSDALRIYYD-SPDE----ELIEKILSYLDTDFLSK-----NNVSVGNGADEIIYVMMLMF-D--- 97 (335)
T ss_dssp CCCHHHHHHHHHTCCGGGGGSCCC-SSCH----HHHHHHHHHHTCSSCCG-----GGEEEESSHHHHHHHHHHHS-S---
T ss_pred CCCHHHHHHHHHHhhhhhhhcCCC-CchH----HHHHHHHHHcCCCCCCH-----HHEEEcCChHHHHHHHHHHh-C---
Confidence 35678889888887432 222322 2333 45566888888 543 45899999999999887766 1
Q ss_pred HHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHH
Q 011057 143 NKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVK 222 (494)
Q Consensus 143 ~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~ 222 (494)
++|+++ ++|..+...++..|++++.++++++ +.+|+++| +++++|++++|+||||.+.|.+
T Consensus 98 ------------d~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l-----~~~~~v~l~~p~nptG~~~~~~ 158 (335)
T 1uu1_A 98 ------------RSVFFP-PTYSCYRIFAKAVGAKFLEVPLTKD-LRIPEVNV-----GEGDVVFIPNPNNPTGHVFERE 158 (335)
T ss_dssp ------------EEEECS-SSCHHHHHHHHHHTCEEEECCCCTT-SCCCCCCC-----CTTEEEEEESSCTTTCCCCCHH
T ss_pred ------------CcEEEC-CCcHHHHHHHHHcCCeEEEeccCCC-CCCCHHHc-----CCCCEEEEeCCCCCCCCCCCHH
Confidence 579999 9999999999999999999998754 67888776 5788999999999999999999
Q ss_pred HHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCC-cCCceEEEEEeCCCCcccccc
Q 011057 223 LLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGL-VYAGIGWVIWRNKEDLPEELI 301 (494)
Q Consensus 223 ~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~G~~~~~~~~~~~~~~~ 301 (494)
+|.++++.+ + ++++|++|+.+.. .+... .+...+.+++..+++|+++ ++.++|++++++ ..+ +.+.
T Consensus 159 ~l~~l~~~~------~-~li~De~~~~~~~---~~~~~-~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~-~~~-~~l~ 225 (335)
T 1uu1_A 159 EIERILKTG------A-FVALDEAYYEFHG---ESYVD-FLKKYENLAVIRTFSKAFSLAAQRVGYVVASE-KFI-DAYN 225 (335)
T ss_dssp HHHHHHHTT------C-EEEEECTTHHHHC---CCCGG-GGGTCSSEEEEEESTTTTTCGGGCCEEEEECH-HHH-HHHH
T ss_pred HHHHHHHhC------C-EEEEECcchhhcc---hhHHH-HhhhCCCEEEEecchhhcCCcccCeEEEEeCH-HHH-HHHH
Confidence 999999999 9 9999999986431 11011 1222346788889999985 555689998843 222 2111
Q ss_pred cccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccEEEEEec
Q 011057 302 FHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLK 381 (494)
Q Consensus 302 ~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~ 381 (494)
.... . ++.+.....++.++++. .+.+++..++..++++++.+.|++++ +++. ++ ..+++.+.++
T Consensus 226 ~~~~-------~----~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~-~~-~~~~~~~~~~ 289 (335)
T 1uu1_A 226 RVRL-------P----FNVSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREMG-YRIT-DS-RGNFVFVFME 289 (335)
T ss_dssp HHSC-------T----TCSCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHT-CCBC-CC-CSSEEEEECC
T ss_pred HhcC-------C----CCcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHCC-cEEc-CC-CCeEEEEECC
Confidence 1100 0 12222333333333432 23567788888899999999999884 7654 32 4567777763
Q ss_pred CCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHH
Q 011057 382 DNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITK 439 (494)
Q Consensus 382 ~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~ 439 (494)
. .+..++.++|.++|+.+.. ...++|++++ +.++++++++.|++
T Consensus 290 ~---~~~~~~~~~l~~~gi~v~~--------~~~~iRis~~---~~~~i~~~~~~l~~ 333 (335)
T 1uu1_A 290 K---EEKERLLEHLRTKNVAVRS--------FREGVRITIG---KREENDMILRELEV 333 (335)
T ss_dssp T---HHHHHHHHHHHHHTEEEEE--------ETTEEEEECC---CHHHHHHHHHHHHC
T ss_pred C---CCHHHHHHHHHHCCEEEEE--------CCCeEEEEeC---CHHHHHHHHHHHHh
Confidence 2 3567899999999998754 2346999986 45677777776654
No 156
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.91 E-value=1.5e-22 Score=202.38 Aligned_cols=326 Identities=14% Similarity=0.067 Sum_probs=206.8
Q ss_pred CCCCCccccccc---C-CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHH
Q 011057 54 GNPRLNLASFVT---T-WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEA 129 (494)
Q Consensus 54 ~~~~~~~~~~~~---~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a 129 (494)
++.++++.++.+ . +++|.+.+++.+.+.........++. ....++++++++++|.+ ..+++|+||++|
T Consensus 27 g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~y~~--~~~~~l~~~la~~~g~~------~~v~~~~g~t~a 98 (375)
T 2eh6_A 27 GKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYEN--PWQEELAHKLVKHFWTE------GKVFFANSGTES 98 (375)
T ss_dssp CCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCTTBCC--HHHHHHHHHHHHTSSSC------EEEEEESSHHHH
T ss_pred CCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCcccCC--HHHHHHHHHHHhhcCCC------CeEEEeCchHHH
Confidence 344455554432 1 25678888888887653211112221 23345778899999983 248999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcch-HHHHHHHHcCCe------------eEEEeccCCccccCHHHHH
Q 011057 130 IMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQV-CWEKFARYFEVE------------LKEVKLSEGYYVMDPVKAV 196 (494)
Q Consensus 130 ~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~-s~~~~~~~~G~~------------v~~v~~~~~~~~~d~~~L~ 196 (494)
+.+++.+++. +... + ...+++|++++++|. ....+....|.. +..++ ..|+++|+
T Consensus 99 ~~~~~~~~~~-~~~~----~-~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~ 166 (375)
T 2eh6_A 99 VEAAIKLARK-YWRD----K-GKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAK------LNDIDSVY 166 (375)
T ss_dssp HHHHHHHHHH-HHHH----T-TCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEEC------TTCHHHHH
T ss_pred HHHHHHHHHH-Hhcc----C-CCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCC------CchHHHHH
Confidence 9988876422 1100 0 011257888777644 333333333221 22222 15899999
Q ss_pred HhhhhCCeEEEEeeCCCCcccccC----HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccc-cccCCCceEE
Q 011057 197 EMVDENTICVAAILGSTLNGEFED----VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEW-DFRLPLVKSI 271 (494)
Q Consensus 197 ~~i~~~t~~vv~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~D~~ 271 (494)
+++++++++|+++.++|+||.+.| +++|.++|+++ ++++++|++|+++.. ....... .++ ...|++
T Consensus 167 ~~l~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--~~~~~~~~~~~-~~~d~~ 237 (375)
T 2eh6_A 167 KLLDEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEK------DVLLIIDEVQTGIGR--TGEFYAYQHFN-LKPDVI 237 (375)
T ss_dssp TTCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGGT-CCCSEE
T ss_pred HHhcCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHh------CCEEEEeccccCCCC--CCcchhhhhcC-CCCCEE
Confidence 999888999999999999999988 99999999999 999999999995321 1111111 111 137888
Q ss_pred EEcCcccCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHH
Q 011057 272 NVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENA 351 (494)
Q Consensus 272 ~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a 351 (494)
+++ |+++++.++|+++++++ .. +.+.. .... .++ ++ +.....++.++++.+. +..++..+++
T Consensus 238 s~S--K~~~~g~~~G~~~~~~~-~~-~~~~~--~~~~-----~~~-~~-~~~~~~~~~~~l~~~~-----~~~~~~~~~~ 299 (375)
T 2eh6_A 238 ALA--KGLGGGVPIGAILAREE-VA-QSFTP--GSHG-----STF-GG-NPLACRAGTVVVDEVE-----KLLPHVREVG 299 (375)
T ss_dssp EEC--GGGGTTSCCEEEEEEHH-HH-TTCCT--TSCC-----CSS-TT-CHHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred EEc--ccccCCCCeEEEEEcHH-HH-hhhcC--CCCC-----CCC-CC-CHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 766 87778889999998753 22 11111 0000 011 11 2222222333443332 5677888899
Q ss_pred HHHHHHHhhCCCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHH
Q 011057 352 MVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAE 431 (494)
Q Consensus 352 ~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id 431 (494)
+++.+.|++++. ..... ..+++.+.+.. +..++.+.|.++|+.+... +..++|++++..+++++++
T Consensus 300 ~~l~~~L~~~~~-~~~~~--~g~~~~~~~~~----~~~~~~~~l~~~gi~~~~~-------~~~~iRi~~~~~~~~~~i~ 365 (375)
T 2eh6_A 300 NYFKEKLKELGK-GKVKG--RGLMLGLELER----ECKDYVLKALEKGLLINCT-------AGKVLRFLPPLIIQKEHID 365 (375)
T ss_dssp HHHHHHHHHTTS-SEEEE--ETTEEEEECSS----CCHHHHHHHHHTTEECEEE-------TTTEEEECCCTTCCHHHHH
T ss_pred HHHHHHHHHHhc-CCceE--EEEEEEEEEcC----cHHHHHHHHHHCCCEEecC-------CCCEEEEECCCCCCHHHHH
Confidence 999999999873 32222 35677777743 3568999999999986432 2457999988788999999
Q ss_pred HHHHHHHHH
Q 011057 432 RLVLDITKV 440 (494)
Q Consensus 432 ~~i~~l~~~ 440 (494)
++++.|+++
T Consensus 366 ~~~~~l~~~ 374 (375)
T 2eh6_A 366 RAISVLREI 374 (375)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999888765
No 157
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.91 E-value=1.1e-22 Score=205.17 Aligned_cols=286 Identities=15% Similarity=0.103 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHH---
Q 011057 95 ELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFA--- 171 (494)
Q Consensus 95 ~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~--- 171 (494)
...+++++.+++++|.+. .+++++|++|+..++.++.. .+++|+++.+.|.++...+
T Consensus 65 ~~~~~l~~~la~~~g~~~-------~i~~~sG~~a~~~~l~~~~~-------------~gd~vl~~~~~~~~~~~~~~~~ 124 (398)
T 1gc0_A 65 PTLNLLEARMASLEGGEA-------GLALASGMGAITSTLWTLLR-------------PGDEVLLGNTLYGCTFAFLHHG 124 (398)
T ss_dssp HHHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHCC-------------TTCEEEEESSCCSHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCCCc-------EEEECCHHHHHHHHHHHHhc-------------CCCEEEEeCCCchhHHHHHHHH
Confidence 445567778999999863 67778889999988887732 1258999999998877665
Q ss_pred -HHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEEEecccccc
Q 011057 172 -RYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGF 250 (494)
Q Consensus 172 -~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~ 250 (494)
...|++++.++. .|+++|++++++++++|++++++|++|.+.|+++|.++|+++ |+++|+|++|+.+
T Consensus 125 ~~~~g~~~~~~~~------~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~------~~~li~D~~~~~~ 192 (398)
T 1gc0_A 125 IGEFGVKLRHVDM------ADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKH------GATVVVDNTYCTP 192 (398)
T ss_dssp GGGGTCEEEEECT------TCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGG------TCEEEEECTTTHH
T ss_pred HHHcCCEEEEECC------CCHHHHHHhcCCCCeEEEEECCCCCCcccccHHHHHHHHHHc------CCEEEEECCCccc
Confidence 667888888874 378999999998999999999999999999999999999999 9999999999876
Q ss_pred cccccCCcccccccCCCceEEEEcCcccCCcCCc--eEEEEEeCCCCcccccccccCC-CCCCCCCcccccCcchHHHHH
Q 011057 251 IAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAG--IGWVIWRNKEDLPEELIFHINY-LGADQPTFTLNFSKGSSQVIA 327 (494)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~G~~~~~~~~~~~~~~~~~~~y-~~~~~~~~~~~~s~~~~~~~a 327 (494)
... .+ .. .++|+++.++||++.+|.+ .|+++.+++ .+...+.....+ .+ ++.+ .+.
T Consensus 193 ~~~--~~---~~---~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~-~~~~~~~~~~~~~~~---------~~~~---~~~ 251 (398)
T 1gc0_A 193 YLQ--RP---LE---LGADLVVHSATKYLSGHGDITAGIVVGSQA-LVDRIRLQGLKDMTG---------AVLS---PHD 251 (398)
T ss_dssp HHC--CG---GG---GTCSEEEEETTTTTTCSSSCCCEEEEECHH-HHHHHHHTHHHHHTC---------CCCC---HHH
T ss_pred ccC--Cc---hh---hCceEEEECCccccCCCCCCeEEEEEEChH-HHHHHHHHHhhccCC---------CCCC---HHH
Confidence 431 11 11 2689999999999987765 488776543 221111111111 11 1122 223
Q ss_pred HHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEE--------------eec--CCCccEEEEEecCCCCCCHHHH
Q 011057 328 QYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNI--------------VSK--DEGVPLVAFSLKDNKRHDEFEV 391 (494)
Q Consensus 328 ~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~--------------~~~--~~~~~~v~f~~~~~~~~~~~~l 391 (494)
++++++.+ +.+..+.++..+++.++.+.|++++.++- ..+ ....++++|.+.+ +...+
T Consensus 252 ~~~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~ 325 (398)
T 1gc0_A 252 AALLMRGI--KTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG----GIGAG 325 (398)
T ss_dssp HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT----HHHHH
T ss_pred HHHHHhcc--chHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECC----CHHHH
Confidence 44444433 23456677778888888888888765432 111 0146799998853 23456
Q ss_pred HHHHHhcCceeecccc---------CCC--------------CCCceEEEEEeccCCChHHHHHHHHHHHH
Q 011057 392 AELLRRFGWIVPAYTM---------PAD--------------AQHITVLRVVIREDFSRTLAERLVLDITK 439 (494)
Q Consensus 392 ~~~L~~~Gi~v~~~~~---------~~~--------------~~~~~~lRvs~~~~~t~~~id~~i~~l~~ 439 (494)
.+.|.+.|+.+..... |.. .....++|+|++...++++++.+.+.|++
T Consensus 326 ~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~ 396 (398)
T 1gc0_A 326 RRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKA 396 (398)
T ss_dssp HHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHh
Confidence 6777777876543110 100 01136899999987777777766666654
No 158
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.91 E-value=3.7e-23 Score=205.34 Aligned_cols=292 Identities=12% Similarity=0.058 Sum_probs=186.8
Q ss_pred HHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHH---HHHHcC
Q 011057 99 RCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEK---FARYFE 175 (494)
Q Consensus 99 ~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~---~~~~~G 175 (494)
++++++++++|.+. .+++++|++|+.+++.++..+. ....|+++...|++... .+...|
T Consensus 51 ~l~~~la~~~~~~~-------~i~~~~G~~a~~~al~~~~~~g-----------d~~~vi~~~~~~~~~~~~~~~~~~~g 112 (357)
T 3lws_A 51 PFEQKFADVLGMDD-------AVFFPSGTMAQQVALRIWSDET-----------DNRTVAYHPLCHLEIHEQDGLKELHP 112 (357)
T ss_dssp HHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHHHHH-----------TCCEEEECTTCHHHHSSTTHHHHHSS
T ss_pred HHHHHHHHHhCCCc-------EEEecCcHHHHHHHHHHHhhcC-----------CCcEEEecccceeeeeccchhhhccC
Confidence 45567999999864 5777899999998888775531 01268888888876654 355668
Q ss_pred CeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCc-ccccC---HHHHHHHHHHhhcccCCCceEEEeccccccc
Q 011057 176 VELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLN-GEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFI 251 (494)
Q Consensus 176 ~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~t-G~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~ 251 (494)
++++.++.+ ++.+|+++|+++. ++++|++++++||+ |.+.+ +++|.++|+++ |+++|+|+||..+.
T Consensus 113 ~~~~~v~~~--~~~~d~~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~------~~~li~D~a~~~~~ 182 (357)
T 3lws_A 113 IETILVGAA--DRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRER------GIRLHLDGARLFEM 182 (357)
T ss_dssp CEEEECSCT--TSCCCHHHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHT------TCEEEEEETTHHHH
T ss_pred cEEEEecCC--CCCcCHHHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHHHHHHHc------CCEEEEECchhhhh
Confidence 888877743 3579999999884 38899999999998 88764 88999999999 99999999987322
Q ss_pred ccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHH
Q 011057 252 APFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQ 331 (494)
Q Consensus 252 ~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~a 331 (494)
......... .+. ..+|+++.++||++.+|.| |+++. ++..+......... .+.... +. .....+..++
T Consensus 183 ~~~~~~~~~-~~~-~~~d~~~~s~sK~~~~~~g-g~~~~-~~~~~~~~~~~~~~-~~~~~~------~~-~~~~~~~~~~ 250 (357)
T 3lws_A 183 LPYYEKTAA-EIA-GLFDSIYISFYKGLGGIAG-AILAG-PAAFCQTARIWKRR-YGGDLI------SL-YPYIVSADYY 250 (357)
T ss_dssp HHHHTCCHH-HHH-TTSSEEEEESSSTTCCSSC-EEEEE-CHHHHHHHHHHHHH-TTCCCS------CC-HHHHHHHHHH
T ss_pred hhhcCCChH-HHH-hcCCEEEEeccccCCCCce-EEEEc-CHHHHHHHHHHHHH-hcCCcc------cc-hHHHHHHHHH
Confidence 111111111 111 3578889999999877877 77665 33222111111111 111100 00 1111222233
Q ss_pred HHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCC
Q 011057 332 LIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADA 411 (494)
Q Consensus 332 l~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~ 411 (494)
++. ..+..++..++++++.+.|++++++++...++..+++.+.+......+..++.+.|.++||.+.....+.
T Consensus 251 l~~-----~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~g~~~~-- 323 (357)
T 3lws_A 251 YEL-----RKDRMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDK-- 323 (357)
T ss_dssp HHH-----HTTCHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCHHHHHHHHHHHHHHHCEESCSCCEEC--
T ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCChHHHHHHHHHHHHhcCeEEecccccC--
Confidence 332 2233455677888999999999889885333367888888754211225688999999999986543332
Q ss_pred CCceEEEEEeccCC---ChHHHHHHHHHH
Q 011057 412 QHITVLRVVIREDF---SRTLAERLVLDI 437 (494)
Q Consensus 412 ~~~~~lRvs~~~~~---t~~~id~~i~~l 437 (494)
.+..++|++++..+ +.++++..++.|
T Consensus 324 ~~~~~~r~~i~~~~~~~~~~~l~~al~~l 352 (357)
T 3lws_A 324 DGYCSTEISVGDAYGELDQQTRDAGFARL 352 (357)
T ss_dssp SSEEEEEEEBCTTGGGSCHHHHHHHHHHH
T ss_pred CCceEEEEEecchhhhcCHHHHHHHHHHH
Confidence 35678999987554 344444333333
No 159
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.91 E-value=8.9e-23 Score=206.82 Aligned_cols=337 Identities=12% Similarity=0.043 Sum_probs=218.1
Q ss_pred CCCCccccccc-----C-CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhH
Q 011057 55 NPRLNLASFVT-----T-WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSE 128 (494)
Q Consensus 55 ~~~~~~~~~~~-----~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~ 128 (494)
...++|+.+.+ + ++++.+.+++.+........|...++..++++++.+++....+.+. ...+++|+||++
T Consensus 37 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~~~~~----~~~i~~t~g~~~ 112 (413)
T 3t18_A 37 EAVINAALGTLLDDKGKIIALPSVYDRLDEMDRSHIASYAPIEGEKDYRKIVIDTLFGPYKPEG----YISAIATPGGTG 112 (413)
T ss_dssp GGCEECCSCCCBCTTSCBCCCHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSS----EEEEEEESHHHH
T ss_pred cceEeccccCccCCCCCcCChHHHHHHHHhcCcccccCcCCCCCCHHHHHHHHHHHhcccCccc----cCcEEEcCccHH
Confidence 34455555543 2 3456777877654433333455556788888888888877665431 135999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhh----CCe
Q 011057 129 AIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDE----NTI 204 (494)
Q Consensus 129 a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~----~t~ 204 (494)
|+..++.++.+ .+++|+++.++|..+...++..|++++.++++++++.+|+++|++++++ +++
T Consensus 113 al~~~~~~~~~-------------~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~ 179 (413)
T 3t18_A 113 AIRSAIFSYLD-------------EGDPLICHDYYWAPYRKICEEFGRNFKTFEFFTDDFAFNIDVYKEAIDEGIRDSDR 179 (413)
T ss_dssp HHHHHHHHHCC-------------SSCEEEEESSCCTHHHHHHHHHTCEEEEECCBCTTSSBCHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHhcC-------------CCCEEEECCCCcccHHHHHHHhCCeEEEeeccCCCCCcCHHHHHHHHHHHhhcCCC
Confidence 99988887632 1268999999999999999999999999998544478999999999986 677
Q ss_pred -EEEEeeC-CCCcccccCHHHHH---HHHH------HhhcccCCCceEEEecccccccccccCCccc---cccc-C-CCc
Q 011057 205 -CVAAILG-STLNGEFEDVKLLN---DLLA------EKNKETGWDTPIHVDAASGGFIAPFLYPELE---WDFR-L-PLV 268 (494)
Q Consensus 205 -~vv~~~~-~~~tG~~~~l~~I~---~la~------~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~---~~~~-~-~~~ 268 (494)
++++++| +||||.+.|.+++. ++|+ ++ ++++++|++|.++.. ...... .... . +..
T Consensus 180 ~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~------~~~li~De~y~~~~~--~~~~~~~~~~~~~~~~~~~ 251 (413)
T 3t18_A 180 IASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDK------KITLIVDVAYLEFAG--DGDQQRKFFEKFSNLPRNL 251 (413)
T ss_dssp EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTC------EEEEEEECTTGGGSS--SSSTTTGGGGGGTTCCTTE
T ss_pred EEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCC------cEEEEEecccccccC--ChhhHHHHHHHHhhcCCCe
Confidence 6777888 99999998766655 5555 77 999999999976542 111110 0111 1 111
Q ss_pred -eEEEEcCcccCC-cCCceEEEEEe--CCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHh------
Q 011057 269 -KSINVSGHKYGL-VYAGIGWVIWR--NKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFE------ 338 (494)
Q Consensus 269 -D~~~~~~hK~l~-~p~g~G~~~~~--~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~------ 338 (494)
.++..+++|.+. ++.++|++++. ++... +.+.....+.. . ++....+.+++.++...+...
T Consensus 252 ~~i~~~S~sK~~~~~G~riG~~~~~~~~~~~~-~~~~~~~~~~~-------~-~~~~~~~~~~~~a~~~~l~~~~~~~~~ 322 (413)
T 3t18_A 252 FVVVAFSMSKSHTAYGLRSGAAVGISSSKEII-EEFEASLAHSA-------R-CNWSNGTHAAQNILIELERAENKKIYE 322 (413)
T ss_dssp EEEEEEEHHHHTTCGGGCCEEEEEEESCHHHH-HHHHHHHHHHH-------H-HHTSSCCHHHHHHHHHTTSHHHHHHHH
T ss_pred eEEEEEecCccCCCcCcCcEEEEEecCCHHHH-HHHHHHHHHhh-------h-ccccCCChHHHHHHHHHhcChHHHHHH
Confidence 256678999876 66778999862 32222 21111100000 0 000012234444444444332
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccEEEE-EecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceE
Q 011057 339 -GYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAF-SLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITV 416 (494)
Q Consensus 339 -g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f-~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~ 416 (494)
..+++.+++.++++++.+.|++++ +++..+. .+++.| .. .+..++.+.|.++|+.+.. +..+
T Consensus 323 ~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~~--~~~~~~~~~-----~~~~~~~~~l~~~gv~v~~--------g~~~ 386 (413)
T 3t18_A 323 QELVDLRNMLKSRADVFVTAAKENK-LTMIPYF--GGFFTFIPT-----DKAFDIVKDLEKENIFTIP--------SAKG 386 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-CCCBCCC--SSSCEEEEC-----SCHHHHHHHHHHTTEECEE--------CSSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC-CCccCCC--ceEEEEeCC-----CCHHHHHHHHHhCCEEEec--------CCCc
Confidence 234556677888899999999984 7766443 444433 32 2678899999999998744 2357
Q ss_pred EEEEeccCCChHHHHHHHHHHHHHHHHHh
Q 011057 417 LRVVIREDFSRTLAERLVLDITKVLHELD 445 (494)
Q Consensus 417 lRvs~~~~~t~~~id~~i~~l~~~~~~l~ 445 (494)
+|+++... +.+++ ++.|+++++++.
T Consensus 387 iRis~~~~-~~~~~---l~~l~~~l~~~~ 411 (413)
T 3t18_A 387 IRVAICGV-GEEKI---PKLVQRLAFYTN 411 (413)
T ss_dssp EEECTTTS-CGGGH---HHHHHHHHHHHH
T ss_pred eEEEEeeC-CHHHH---HHHHHHHHHHHh
Confidence 99998743 44444 667777776654
No 160
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.91 E-value=1.5e-22 Score=204.26 Aligned_cols=351 Identities=12% Similarity=0.044 Sum_probs=216.4
Q ss_pred HHHHHHHHHHhhhh-cCCCCCcccccccC-CChHHHHHHHHHHhccc-----CCCCCCChhhHHHHHHHHHHHHHH--hC
Q 011057 39 KEAAYQIINDELML-DGNPRLNLASFVTT-WMEPECDKLMMAAINKN-----YVDMDEYPVTTELQNRCVNIIARL--FN 109 (494)
Q Consensus 39 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~-----~~~~~~~~~~~~le~~~~~~la~l--~g 109 (494)
.+++.+..+..... .++..++|..+.+. +++|.+.+++.++++.. ...|...++..++++. ++++ .|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~----la~~l~~g 91 (400)
T 3asa_A 16 FADLQKRVAQFRLENPQHTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQK----LSEDFYRG 91 (400)
T ss_dssp HHHHHHHHHHHHHHCTTSCCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHH----HHHTTSTT
T ss_pred HHHHHHHHHHhhhhcCCCceEeccCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHH----HHHHHHcC
Confidence 44555555544322 34455566665543 45677888888776542 1223333455555554 6666 46
Q ss_pred -CCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCe-eEEEeccCC-
Q 011057 110 -APLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVE-LKEVKLSEG- 186 (494)
Q Consensus 110 -~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~-v~~v~~~~~- 186 (494)
.++ ..+++|+|+++++.+++..+ . .+++|+++.++|..+...++..|++ ++.++++++
T Consensus 92 ~~~~-----~~v~~~~G~~~al~~~~~~~-~-------------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~ 152 (400)
T 3asa_A 92 FVDA-----KEIFISDGAKVDLFRLLSFF-G-------------PNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQEN 152 (400)
T ss_dssp SSCG-----GGEEEESCHHHHHHHHHHHH-C-------------SSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGG
T ss_pred CCCH-----HHEEEccChHHHHHHHHHHc-C-------------CCCEEEECCCCcHHHHHHHHHcCCcceEecccchhc
Confidence 433 45899999999998654322 1 1258999999999999999999999 999998743
Q ss_pred ccccCHHHHHHhhhhCCeEEEEeeCCCCcccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccc
Q 011057 187 YYVMDPVKAVEMVDENTICVAAILGSTLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDF 263 (494)
Q Consensus 187 ~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~ 263 (494)
.+..|++ + + +++++|++++++||||.+.| +++|+++|+++ ++++++|++|+.+.. . +.....+
T Consensus 153 ~~~~~l~---~-~-~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~--~-~~~~~~~ 218 (400)
T 3asa_A 153 AFFPEFP---E-D-THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEH------EILILFDAAYSTFIS--D-PSLPKSI 218 (400)
T ss_dssp TTCCCCC---T-T-CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTGGGCC--C-TTSCSSG
T ss_pred CcccChh---h-c-cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHc------CCEEEEEchhhhhhc--C-CCCCCch
Confidence 2334432 2 1 56889999999999999976 56788999999 999999999986532 1 1101111
Q ss_pred -cCC---CceEEEEcCcccCC-cCCceEEEEEeCCCC------cccccccccCCCCCCCCCcccccCcchHHHHHHHHHH
Q 011057 264 -RLP---LVKSINVSGHKYGL-VYAGIGWVIWRNKED------LPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQL 332 (494)
Q Consensus 264 -~~~---~~D~~~~~~hK~l~-~p~g~G~~~~~~~~~------~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al 332 (494)
... ..+++..+++|+++ ++.++|+++++++.. +......... .++ ++.+.. ++.++.
T Consensus 219 ~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~---~~~a~~ 286 (400)
T 3asa_A 219 FEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERFLS--------TTF-NGASIP---AQEAGV 286 (400)
T ss_dssp GGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCTTCBCTTSCBHHHHHHHHHH--------HHC-CCCCHH---HHHHHH
T ss_pred hhCCCCCCceEEEecchhhcCCcchheeEEeeChhhccchhhhHHHHHHHHhc--------cCc-cCCChH---HHHHHH
Confidence 111 24577889999985 566789998755321 1110000000 000 112222 233333
Q ss_pred HHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccEEEEE-ecCCCCCCHHHHHHHHHh-cCceeeccccCCC
Q 011057 333 IRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFS-LKDNKRHDEFEVAELLRR-FGWIVPAYTMPAD 410 (494)
Q Consensus 333 ~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~-~~~~~~~~~~~l~~~L~~-~Gi~v~~~~~~~~ 410 (494)
..+....+++..++..++++++.+.|++++ +++..+. ..+++.+. ++. +.+..++.++|.+ +|+.+.......
T Consensus 287 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~l~~~~gv~v~~g~~f~- 361 (400)
T 3asa_A 287 AGLSILPQLEAIHYYRENSDLLRKALLATG-FEVFGGE-HAPYLWVKPTQA--NISDRDLFDFFLREYHIAITPGIGFG- 361 (400)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHTT-CEEEECS-SSSEEEEECCCT--TCCTTTHHHHHHHHHSEECEEGGGGC-
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHCC-CeeeCCC-CceEEEEeccCC--CCCHHHHHHHHHHhCCEEEeChhHhC-
Confidence 333222456777888899999999999984 8876543 45677777 532 3455578888875 599875433221
Q ss_pred CCCceEEEEEeccCCChHHHHHHHHHHHHHHHHHh
Q 011057 411 AQHITVLRVVIREDFSRTLAERLVLDITKVLHELD 445 (494)
Q Consensus 411 ~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~ 445 (494)
..+..++|+++ ..++++++++++.|+++++...
T Consensus 362 ~~~~~~iRis~--~~~~e~i~~~l~~l~~~~~~~~ 394 (400)
T 3asa_A 362 RSGSGFVRFSS--LGKREDILAACERLQMAPALQS 394 (400)
T ss_dssp GGGTTCEEEEC--CSCHHHHHHHHHHHHC------
T ss_pred CCCCCEEEEEe--eCCHHHHHHHHHHHHHHHHhhh
Confidence 12345799994 4578888888887777765543
No 161
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.91 E-value=1.3e-21 Score=197.73 Aligned_cols=327 Identities=12% Similarity=-0.009 Sum_probs=209.7
Q ss_pred ChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 011057 68 MEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA 147 (494)
Q Consensus 68 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~ 147 (494)
.+|.+.+++.+++.........++ .....++++++++++|.+ .+++|+||++|+.+++.+++..+..+
T Consensus 56 ~~p~v~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~la~~~~~~-------~v~~~~gg~~a~~~al~~~~~~~~~~--- 123 (406)
T 4adb_A 56 AHPELREALNEQASKFWHTGNGYT--NEPVLRLAKKLIDATFAD-------RVFFCNSGAEANEAALKLARKFAHDR--- 123 (406)
T ss_dssp TCHHHHHHHHHHHTTCSCCCTTSC--CHHHHHHHHHHHHHSSCS-------EEEEESSHHHHHHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHhcccccCCcC--CHHHHHHHHHHHhhCCCC-------eEEEeCcHHHHHHHHHHHHHHHHHhc---
Confidence 468899999888876333222222 234567888899999875 39999999999999998876532211
Q ss_pred cCCCCCCCeEEeCCCc-chHHHHHHHHcC------------CeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCC
Q 011057 148 EGKPFDKPNIVTGANV-QVCWEKFARYFE------------VELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTL 214 (494)
Q Consensus 148 ~g~~~~~~~vi~~~~~-h~s~~~~~~~~G------------~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~ 214 (494)
|. ..+++|++.++. |.....+....| .++..++ ..|+++|++++++++++|+++ |+|+
T Consensus 124 -~~-~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~l~~~~~~v~~~-p~np 194 (406)
T 4adb_A 124 -YG-SHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAA------YNDINSASALIDDSTCAVIVE-PIQG 194 (406)
T ss_dssp -TC-TTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEEC------TTCHHHHHTTCSTTEEEEEEC-SEET
T ss_pred -CC-CCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeC------CCcHHHHHHHhcCCeEEEEEe-CCcC
Confidence 10 112466665554 444444444333 1233333 248999999999888888888 8999
Q ss_pred cccc-----cCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEE
Q 011057 215 NGEF-----EDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVI 289 (494)
Q Consensus 215 tG~~-----~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~ 289 (494)
+|.+ +++++|.++|+++ |+++|+|++|+++.. .......+......|++++ +|++.++.++|+++
T Consensus 195 ~g~~~~~~~~~l~~l~~l~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~d~~t~--sK~~~~G~r~G~~~ 264 (406)
T 4adb_A 195 EGGVVPASNAFLQGLRELCNRH------NALLIFDEVQTGVGR--TGELYAYMHYGVTPDLLTT--AKALGGGFPVGALL 264 (406)
T ss_dssp TTTSEECCHHHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSHHHHHTCCCSEEEE--CGGGGTTSCCEEEE
T ss_pred CCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccCCCc--cchhHHHHhcCCCCCEEEe--chhhcCCCCeEEEE
Confidence 9854 5799999999999 999999999985421 1111111111123677754 89888666799987
Q ss_pred EeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCC-eEEee
Q 011057 290 WRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGR-FNIVS 368 (494)
Q Consensus 290 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~-~~~~~ 368 (494)
.+++ .. +.+.. .. ...+ .+.+.....++.++++.+.. ++..++..++++++.+.|++++. +.+..
T Consensus 265 ~~~~-~~-~~~~~---~~----~~~~--~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 330 (406)
T 4adb_A 265 ATEE-CA-RVMTV---GT----HGTT--YGGNPLASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTINHRYGLFS 330 (406)
T ss_dssp ECHH-HH-HTCCT---TS----SCCS--STTCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEE
T ss_pred EcHH-HH-hhhcc---CC----cCCC--CCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence 6542 21 11110 00 0001 12223444445555555433 46677888888889888887531 11111
Q ss_pred c-CCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHHhc
Q 011057 369 K-DEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDS 446 (494)
Q Consensus 369 ~-~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~~ 446 (494)
. +....++.+.+......+..++.++|.++|+.+.. .+..++|++++..+++++++++++.|+++++++.+
T Consensus 331 ~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~-------~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~ 402 (406)
T 4adb_A 331 EVRGLGLLIGCVLNADYAGQAKQISQEAAKAGVMVLI-------AGGNVVRFAPALNVSEEEVTTGLDRFAAACEHFVS 402 (406)
T ss_dssp EEEEETTEEEEEECTTTTTCHHHHHHHHHHTTEECEE-------SSTTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEEEEEEEeCCcHHHHHHHHHHHHHCCcEEee-------cCCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1 11345777887542223578999999999998643 12457999888889999999999999999988764
No 162
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.91 E-value=1.7e-22 Score=206.83 Aligned_cols=336 Identities=13% Similarity=0.045 Sum_probs=218.0
Q ss_pred CChHHHHHHHHHHhcccCC-CC------CCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHH
Q 011057 67 WMEPECDKLMMAAINKNYV-DM------DEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKR 139 (494)
Q Consensus 67 ~~~p~~~~~~~~~~~~~~~-~~------~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~ 139 (494)
+.+|.+.+++.+.+.+... .+ ...+....+++..++++++++|.+. ..+++++|++|+..++.++.+
T Consensus 56 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~------~~v~~~sGs~a~~~a~~~~~~ 129 (447)
T 3h7f_A 56 FVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEF------ANVQPHSGAQANAAVLHALMS 129 (447)
T ss_dssp CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE------EECCCSSHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCc------eEEEeCCHHHHHHHHHHHhcC
Confidence 3478888888877753221 11 1222333444444499999999974 233378899999988877633
Q ss_pred HHHHHHHhcCCCCCCCeEEeCCCcchH-HHH--HHHH--cCCeeEEEeccCCccccCHHHHHHhhhh-CCeEEEEeeCCC
Q 011057 140 KWQNKRKAEGKPFDKPNIVTGANVQVC-WEK--FARY--FEVELKEVKLSEGYYVMDPVKAVEMVDE-NTICVAAILGST 213 (494)
Q Consensus 140 ~~~~~~~~~g~~~~~~~vi~~~~~h~s-~~~--~~~~--~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~t~~vv~~~~~~ 213 (494)
. +++|+++.++|.+ +.. .... .+..+..++++++++.+|+++|++++.+ ++++|+++.+++
T Consensus 130 ~-------------Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~i~~~~~~~ 196 (447)
T 3h7f_A 130 P-------------GERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAY 196 (447)
T ss_dssp T-------------TCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHHCCSEEEEECSSC
T ss_pred C-------------CCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhcCCeEEEEcCCCC
Confidence 1 2689998888755 111 1122 2445556666655578999999999964 688888888888
Q ss_pred CcccccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCC
Q 011057 214 LNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNK 293 (494)
Q Consensus 214 ~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~ 293 (494)
+++. ++++|.++|+++ |+++++|++|+.+... ..... . ...++|+++.++||++.+|.| |+++.++
T Consensus 197 ~~~~--~l~~i~~l~~~~------g~lli~Dea~~~g~~~--~g~~~-~-~~~~~di~~~s~sK~l~G~~g-G~i~~~~- 262 (447)
T 3h7f_A 197 PRVL--DFAAFRSIADEV------GAKLLVDMAHFAGLVA--AGLHP-S-PVPHADVVSTTVHKTLGGGRS-GLIVGKQ- 262 (447)
T ss_dssp CSCC--CHHHHHHHHHHH------TCEEEEECTTTHHHHH--TTSSC-C-STTTCSEEEEESSGGGCCCSC-EEEEECG-
T ss_pred CCcc--CHHHHHHHHHHc------CCEEEEECCchhhhhc--CCCCC-C-CCCCCcEEEecCCcCCCCCCe-EEEEECH-
Confidence 8766 999999999999 9999999998654321 11111 0 123689999999999876655 8877654
Q ss_pred CCccccccc-ccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhC----CCeEEee
Q 011057 294 EDLPEELIF-HINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKT----GRFNIVS 368 (494)
Q Consensus 294 ~~~~~~~~~-~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~~~~ 368 (494)
... ..+.. ...+. .++.....+.++.+++..+..++++++.++..++++++.+.|++. ++++++.
T Consensus 263 ~~~-~~l~~~~~~~~---------~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~ 332 (447)
T 3h7f_A 263 QYA-KAINSAVFPGQ---------QGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVS 332 (447)
T ss_dssp GGH-HHHHHHHTTTT---------CSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGG
T ss_pred HHH-HHHhhhcCCcc---------cCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEec
Confidence 222 21111 11110 123333445666666766655567888999999999999999887 3488876
Q ss_pred cCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCC---CCCCceEEEEEeccC----CChHHHHHHHHHHHHHH
Q 011057 369 KDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPA---DAQHITVLRVVIRED----FSRTLAERLVLDITKVL 441 (494)
Q Consensus 369 ~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~---~~~~~~~lRvs~~~~----~t~~~id~~i~~l~~~~ 441 (494)
.+...+++.+.+.+ .+.+...+.+.|.++|+.+.....|. .......+|++.... +++++++++++.|++++
T Consensus 333 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l 411 (447)
T 3h7f_A 333 GGTDVHLVLVDLRD-SPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATAL 411 (447)
T ss_dssp GSCSSSEEEEECTT-SSCCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEcCC-CCCCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHH
Confidence 43345677777643 34567778888888899876221121 012235699986543 57899999999998887
Q ss_pred HHHhc
Q 011057 442 HELDS 446 (494)
Q Consensus 442 ~~l~~ 446 (494)
+...+
T Consensus 412 ~~~~~ 416 (447)
T 3h7f_A 412 ATGSS 416 (447)
T ss_dssp HSGGG
T ss_pred hccCc
Confidence 65543
No 163
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.90 E-value=2.3e-22 Score=207.11 Aligned_cols=340 Identities=12% Similarity=0.044 Sum_probs=209.6
Q ss_pred HHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcC
Q 011057 70 PECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEG 149 (494)
Q Consensus 70 p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g 149 (494)
+.+.+++.+++......|...++..+ +++++++++|.+. +++|+|||+|+.+++.+++..+.. .|
T Consensus 55 ~~v~~a~~~~~~~~~~~y~~~~~~~~----l~~~la~~~~~~~-------v~~t~ggt~A~~~al~~~~~~~~~----~G 119 (467)
T 1ax4_A 55 NAMSDHQWAAMITGDEAYAGSRNYYD----LKDKAKELFNYDY-------IIPAHQGRGAENILFPVLLKYKQK----EG 119 (467)
T ss_dssp CCEEHHHHHHHHTCCCCSSSCHHHHH----HHHHHHHHHCCCE-------EEEESSHHHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHHhhcccccccCccHHH----HHHHHHHHcCCCc-------EEEcCCcHHHHHHHHHHHHHhhcc----CC
Confidence 55666666665443334444444444 5566888888753 899999999999999888652210 12
Q ss_pred CCCCCCe---EEeCCCcchHHHHHHHHcCCeeEEEeccC---------CccccCHHHHHHhhhh----CCeEEEEeeCCC
Q 011057 150 KPFDKPN---IVTGANVQVCWEKFARYFEVELKEVKLSE---------GYYVMDPVKAVEMVDE----NTICVAAILGST 213 (494)
Q Consensus 150 ~~~~~~~---vi~~~~~h~s~~~~~~~~G~~v~~v~~~~---------~~~~~d~~~L~~~i~~----~t~~vv~~~~~~ 213 (494)
++ |+++...|..+..++...|..++.++.+. .++.+|+++|++++++ ++++|+++.++|
T Consensus 120 -----d~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~n 194 (467)
T 1ax4_A 120 -----KAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCN 194 (467)
T ss_dssp -----CCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBT
T ss_pred -----CccceEEEeccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEecccc
Confidence 34 77774333566777888899887765421 1357899999999985 688999999999
Q ss_pred Cc-ccc---cCHHHHHHHHHHhhcccCCCceEEEeccccc-ccc-------cccCCccccccc---CCCceEEEEcCccc
Q 011057 214 LN-GEF---EDVKLLNDLLAEKNKETGWDTPIHVDAASGG-FIA-------PFLYPELEWDFR---LPLVKSINVSGHKY 278 (494)
Q Consensus 214 ~t-G~~---~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~-~~~-------~~~~~~~~~~~~---~~~~D~~~~~~hK~ 278 (494)
++ |.+ +++++|+++|++| |+++|+|++++. +.. .+..... .++. ...+|++++++||+
T Consensus 195 p~gG~~~~~~~l~~i~~la~~~------gi~li~De~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~s~sK~ 267 (467)
T 1ax4_A 195 SAGGQPVSMSNLKEVYEIAKQH------GIFVVMDSARFCENAYFIKARDPKYKNATI-KEVIFDMYKYADALTMSAKKD 267 (467)
T ss_dssp TTTSBCCCHHHHHHHHHHHHHH------TCCEEEECTTHHHHHHHHHHHCGGGTTCCH-HHHHHHHGGGCSEEEEETTST
T ss_pred CCCccCCChhHHHHHHHHHHHc------CCEEEEEchhhhhcchhccccccccCCCch-hhhhhhhccccceEEEecccc
Confidence 99 775 5678999999999 999999998754 110 0100000 0110 02478899999999
Q ss_pred CCcCCceEEEEEeCC-CCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHH
Q 011057 279 GLVYAGIGWVIWRNK-EDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEG 357 (494)
Q Consensus 279 l~~p~g~G~~~~~~~-~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~ 357 (494)
++.|.| |+++.+++ ..+.........+ .+.. . .+..+.....++..++..+.. ++..++..++++++.+.
T Consensus 268 ~g~~~G-g~~~~~d~~~l~~~~~~~~~~~-~~~~-~---~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~ 338 (467)
T 1ax4_A 268 PLLNIG-GLVAIRDNEEIFTLARQRCVPM-EGFV-T---YGGLAGRDMAAMVQGLEEGTE---EEYLHYRIGQVKYLGDR 338 (467)
T ss_dssp TCCSSC-EEEEESSCHHHHHHHHHHHHHH-TCST-T---TTTCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred CCCCcc-eEEEeCCHHHHHHHHHhhcccc-cccc-c---cCCccchHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHH
Confidence 876644 55555534 3332111111111 1110 1 122222333333334443322 12344445777889999
Q ss_pred HhhCCCeEEeecCCCccEEEEEec------CCCCCCHHHHHHHH-HhcCceeec-ccc-----CC-C---CCCceEEEEE
Q 011057 358 LEKTGRFNIVSKDEGVPLVAFSLK------DNKRHDEFEVAELL-RRFGWIVPA-YTM-----PA-D---AQHITVLRVV 420 (494)
Q Consensus 358 L~~~~~~~~~~~~~~~~~v~f~~~------~~~~~~~~~l~~~L-~~~Gi~v~~-~~~-----~~-~---~~~~~~lRvs 420 (494)
|++. ++++..+. ....+.+.+. ...+.+..++.++| .++|+.+.. ... +. . .....++|++
T Consensus 339 L~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls 416 (467)
T 1ax4_A 339 LREA-GIPIQYPT-GGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLT 416 (467)
T ss_dssp HHHT-TCCBCSSC-CSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEE
T ss_pred HHhC-CCCcccCC-CceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEe
Confidence 9884 47765443 4455666621 11124567899999 899998754 110 10 0 0123689999
Q ss_pred eccC-CChHHHHHHHHHHHHHHHHHhcC
Q 011057 421 IRED-FSRTLAERLVLDITKVLHELDSL 447 (494)
Q Consensus 421 ~~~~-~t~~~id~~i~~l~~~~~~l~~~ 447 (494)
+... +|.++++++++.|+++++.+++.
T Consensus 417 ~~~~~~t~e~i~~~~~~l~~~~~~~~~~ 444 (467)
T 1ax4_A 417 IARRVYTNDHMDYIADALIGLKEKFATL 444 (467)
T ss_dssp CCTTSSCHHHHHHHHHHHHTTHHHHTTC
T ss_pred cccccCCHHHHHHHHHHHHHHHHhhhcC
Confidence 8743 88999999999999998887654
No 164
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.90 E-value=1.6e-22 Score=204.91 Aligned_cols=348 Identities=11% Similarity=0.035 Sum_probs=218.3
Q ss_pred cCCCCCccccccc------CCChHHHHHHHHHHhcc--cCCCCCCChhhHHHHHHHHHHHHHHhCC--CCCCCCCcceee
Q 011057 53 DGNPRLNLASFVT------TWMEPECDKLMMAAINK--NYVDMDEYPVTTELQNRCVNIIARLFNA--PLEDSETAVGVG 122 (494)
Q Consensus 53 ~~~~~~~~~~~~~------~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~le~~~~~~la~l~g~--~~~~~~~~~~~~ 122 (494)
.+...++|+.+.+ .+++|.+.+++.+.+.. ....|...++..++++.+.+++....|. ++ ..+++
T Consensus 28 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~-----~~v~~ 102 (412)
T 1ajs_A 28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQE-----KRVGG 102 (412)
T ss_dssp CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHT-----TCEEE
T ss_pred CCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCC-----CcEEE
Confidence 3445566666653 23457888888887722 2234544556667766655555332222 22 24888
Q ss_pred --ecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCe-eEEEecc-CCccccCHHHHHHh
Q 011057 123 --TVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVE-LKEVKLS-EGYYVMDPVKAVEM 198 (494)
Q Consensus 123 --t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~-v~~v~~~-~~~~~~d~~~L~~~ 198 (494)
|+||++|+.+++..+..- . .|.....++|+++.++|..+...++..|++ ++.++++ ++++.+|+++|+++
T Consensus 103 ~~t~gg~~a~~~~~~~~~~~-~-----~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~ 176 (412)
T 1ajs_A 103 VQSLGGTGALRIGAEFLARW-Y-----NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSD 176 (412)
T ss_dssp EEEEHHHHHHHHHHHHHHHH-S-----SSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHH
T ss_pred EECCCcHHHHHHHHHHHHHh-C-----cCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHHHHHH
Confidence 999999999886543221 0 110000157999999999999999999999 9999984 23478999999999
Q ss_pred hhh---CCeEEEEeeCCCCccccc---CHHHHHHHHHHhhcccCCCceEEEecccccccccccC---Cccccc-c-cCCC
Q 011057 199 VDE---NTICVAAILGSTLNGEFE---DVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLY---PELEWD-F-RLPL 267 (494)
Q Consensus 199 i~~---~t~~vv~~~~~~~tG~~~---~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~---~~~~~~-~-~~~~ 267 (494)
+.+ ++++|++++++||||.+. ++++|+++|+++ |+++++|++|.++.. .. ...... + ....
T Consensus 177 l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~y~~~~~--~~~~~~~~~~~~~~~~~~ 248 (412)
T 1ajs_A 177 LENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRR------FLFPFFDSAYQGFAS--GNLEKDAWAIRYFVSEGF 248 (412)
T ss_dssp HHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEEESCTTTTT--SCHHHHTHHHHHHHHTTC
T ss_pred HHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHC------CCEEEEEcccccccC--CcccccchHHHHHhccCC
Confidence 976 567888899999999984 467899999999 999999999976532 10 000001 1 1122
Q ss_pred ceEEEEcCcccCCc-CCceEEEEEe--CCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhc-----HhH
Q 011057 268 VKSINVSGHKYGLV-YAGIGWVIWR--NKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG-----FEG 339 (494)
Q Consensus 268 ~D~~~~~~hK~l~~-p~g~G~~~~~--~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~-----~~g 339 (494)
-+++..+++|.++. +.++|++++. ++..+.........+... +. ...+.....++.++|+... .+.
T Consensus 249 ~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~ 322 (412)
T 1ajs_A 249 ELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRV-----TW-SNPPAQGARIVARTLSDPELFHEWTGN 322 (412)
T ss_dssp CEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHT-----TT-SSCCSHHHHHHHHHHHSHHHHHHHHHH
T ss_pred cEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhc-----cc-CCCChHHHHHHHHHHcCcchhHHHHHH
Confidence 34777899998754 5568999872 332110000000000000 00 1111222333333443221 235
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCC---CeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceE
Q 011057 340 YRNVMENCHENAMVLKEGLEKTG---RFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITV 416 (494)
Q Consensus 340 ~~~~~~~~~~~a~~l~~~L~~~~---~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~ 416 (494)
+++..++..++++++.+.|++++ ++++..+. .+++.|. .++...+.+.|.++|+.+.. +
T Consensus 323 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~l~~~gv~v~~--------~--- 384 (412)
T 1ajs_A 323 VKTMADRILSMRSELRARLEALKTPGTWNHITDQ--IGMFSFT-----GLNPKQVEYLINQKHIYLLP--------S--- 384 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHC--CSSEEEC-----CCCHHHHHHHHHTTCEECCT--------T---
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCC--CceEEEe-----CCCHHHHHHHHHhCCEEecC--------C---
Confidence 67788888999999999999986 46654432 3444432 12344556667788998632 1
Q ss_pred EEEEeccCCChHHHHHHHHHHHHHHHHH
Q 011057 417 LRVVIREDFSRTLAERLVLDITKVLHEL 444 (494)
Q Consensus 417 lRvs~~~~~t~~~id~~i~~l~~~~~~l 444 (494)
+|++++. .+.++++++++.|+++++++
T Consensus 385 ~Ris~~~-~~~~~i~~~~~~l~~~l~~~ 411 (412)
T 1ajs_A 385 GRINMCG-LTTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp SEEEGGG-CCTTTHHHHHHHHHHHHHHC
T ss_pred cEEEeee-CCHHHHHHHHHHHHHHHHhc
Confidence 6999884 58899999999999887653
No 165
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.90 E-value=1.8e-22 Score=203.56 Aligned_cols=291 Identities=14% Similarity=0.100 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHH--
Q 011057 94 TELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFA-- 171 (494)
Q Consensus 94 ~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~-- 171 (494)
....+++++++++++|.+. .+++++|++|+.+++.++.. .+++|+++.+.|.++...+
T Consensus 63 ~~~~~~l~~~la~~~g~~~-------~i~~~sG~~a~~~~l~~~~~-------------~gd~vi~~~~~~~~~~~~~~~ 122 (398)
T 2rfv_A 63 NPTTDALEKKLAVLERGEA-------GLATASGISAITTTLLTLCQ-------------QGDHIVSASAIYGCTHAFLSH 122 (398)
T ss_dssp CHHHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHCC-------------TTCEEEEESSSCHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHhCCCc-------EEEECCHHHHHHHHHHHHhC-------------CCCEEEEcCCCcccHHHHHHH
Confidence 4555678888999999863 67788888999988887732 1268999999999887765
Q ss_pred --HHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEEEeccccc
Q 011057 172 --RYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGG 249 (494)
Q Consensus 172 --~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~ 249 (494)
+..|++++.++.+ |+++|++++++++++|++++++|+||.+.|+++|.++|+++ |+++|+|++|+.
T Consensus 123 ~~~~~g~~~~~v~~~------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~------~~~li~De~~~~ 190 (398)
T 2rfv_A 123 SMPKFGINVRFVDAA------KPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQ------GALLVVDNTFMS 190 (398)
T ss_dssp HHHHTTCEEEEECTT------SHHHHHHHCCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHT------TCEEEEECTTTC
T ss_pred HHHHcCCEEEEeCCC------CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHc------CCEEEEECCCcc
Confidence 7789999988853 78999999998999999999999999999999999999999 999999999987
Q ss_pred ccccccCCcccccccCCCceEEEEcCcccCCcCCc--eEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHH
Q 011057 250 FIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAG--IGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIA 327 (494)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a 327 (494)
+..+ .+ .. .++|++..++||++.+|.+ .|+++.+++ .+...+........ .++.+ .+.
T Consensus 191 ~~~~--~~---~~---~~~di~~~s~sK~~~~~g~~~~G~~~~~~~-~~~~~~~~~~~~~~--------~~~~~---~~~ 250 (398)
T 2rfv_A 191 PYCQ--QP---LQ---LGADIVVHSVTKYINGHGDVIGGIIVGKQE-FIDQARFVGLKDIT--------GGCMS---PFN 250 (398)
T ss_dssp TTTC--CG---GG---GTCSEEEEETTTTTTCSSCCCCEEEEECHH-HHHHHHHTHHHHTT--------CCCCC---HHH
T ss_pred cccC--Cc---hh---hCCcEEEEeCcccccCCCCceEEEEEECHH-HHHHHHHHHHHhCC--------CCCCC---HHH
Confidence 6431 11 11 2589999999999877655 488877643 22111111000000 01222 233
Q ss_pred HHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeE--------------Eeec--CCCccEEEEEecCCCCCCHHHH
Q 011057 328 QYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFN--------------IVSK--DEGVPLVAFSLKDNKRHDEFEV 391 (494)
Q Consensus 328 ~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~--------------~~~~--~~~~~~v~f~~~~~~~~~~~~l 391 (494)
++++++.+. .+..+.++..++++++.+.|++.+.++ +..+ ....++++|.+.+. ..+...+
T Consensus 251 ~~~~~~~l~--~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~l 327 (398)
T 2rfv_A 251 AWLTLRGVK--TLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGG-LEAGRRM 327 (398)
T ss_dssp HHHHHHHHT--THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTH-HHHHHHH
T ss_pred HHHHHhhhh--hHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCC-HHHHHHH
Confidence 444444442 234455666777788888887765333 2211 01467899988531 0112333
Q ss_pred HHHHHhcCceeecccc------CC--------------CCCCceEEEEEeccCCChHHHHHHHHHHHH
Q 011057 392 AELLRRFGWIVPAYTM------PA--------------DAQHITVLRVVIREDFSRTLAERLVLDITK 439 (494)
Q Consensus 392 ~~~L~~~Gi~v~~~~~------~~--------------~~~~~~~lRvs~~~~~t~~~id~~i~~l~~ 439 (494)
.+.+...|+.++.... |. .......+|++++..+++++++++++.|++
T Consensus 328 ~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 395 (398)
T 2rfv_A 328 INSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRK 395 (398)
T ss_dssp HTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Confidence 3333334554422110 00 001146899999998888888877777664
No 166
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.90 E-value=2e-22 Score=200.19 Aligned_cols=310 Identities=14% Similarity=0.084 Sum_probs=194.3
Q ss_pred hHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhc
Q 011057 69 EPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAE 148 (494)
Q Consensus 69 ~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~ 148 (494)
+|.+.+++.+.+... .+...+. ..++++++++++|.+. .++++||++|+.+++.++....
T Consensus 28 ~p~v~~ai~~~~~~~--~~~~~~~----~~~l~~~la~~~~~~~-------~i~~~~g~~a~~~a~~~~~~~g------- 87 (359)
T 3pj0_A 28 LTEALQNIDDNLESD--IYGNGAV----IEDFETKIAKILGKQS-------AVFFPSGTMAQQIALRIWADRK------- 87 (359)
T ss_dssp HHHHTTTSCTTCBCC--BTTBSHH----HHHHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHHHHH-------
T ss_pred CHHHHHHHHhhcccC--cccCCHH----HHHHHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHHHhcC-------
Confidence 466666655533221 1222333 3456677999999864 5777899999998888876531
Q ss_pred CCCCCCC-eEEeCCCcchHHHH---HHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCc-ccccCHHH
Q 011057 149 GKPFDKP-NIVTGANVQVCWEK---FARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLN-GEFEDVKL 223 (494)
Q Consensus 149 g~~~~~~-~vi~~~~~h~s~~~---~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~t-G~~~~l~~ 223 (494)
+. .|+++...|+.... .+...|++++.++.+ ++.+|+++|+++ .+++++|+++.++|++ |.+.|+++
T Consensus 88 -----~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~d~~~l~~~-~~~~~~v~~~~p~n~~~G~~~~~~~ 159 (359)
T 3pj0_A 88 -----ENRRVAYHPLSHLEIHEQDGLKELQQITPLLLGTA--NQLLTIDDIKSL-REPVSSVLIELPQREIGGQLPAFEE 159 (359)
T ss_dssp -----TCCEEEECTTCHHHHSSTTHHHHHHCCEEEECSCT--TSCCCHHHHHTC-SSCCSEEEEESSBGGGTSBCCCHHH
T ss_pred -----CCcEEEEeccceeeehhcchHHHhcCceEEecCCc--CCCcCHHHHHhc-cCCceEEEEEecccCCCcccCCHHH
Confidence 12 36677777765532 235579998888863 368999999998 7789999999998887 78866555
Q ss_pred H---HHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEEEEEeCCCCccccc
Q 011057 224 L---NDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEEL 300 (494)
Q Consensus 224 I---~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~ 300 (494)
+ .++|+++ |+++|+|++|..+......... ..+. .++|++++++||++.+|.| |+++. ++..+ +.+
T Consensus 160 l~~l~~~~~~~------~~~li~D~a~~~~~~~~~~~~~-~~~~-~~~d~~~~s~sK~~~~~~g-g~~~~-~~~l~-~~~ 228 (359)
T 3pj0_A 160 LEKISEYCHEQ------GISLHLDGARLWEITPFYQKSA-EEIC-ALFDSVYVSFYKGIGGIAG-AILAG-NDDFV-QEA 228 (359)
T ss_dssp HHHHHHHHHHH------TCEEEEEETTCGGGHHHHTCCH-HHHH-TTCSEEEEESSSTTCCSSC-EEEEE-CHHHH-HHH
T ss_pred HHHHHHHHHHc------CCEEEEECcchhcchhhhCCCH-HHhh-ccCCEEEEeccccCCCcce-EEEEC-CHHHH-HHH
Confidence 5 9999999 9999999998754321111111 1111 3678999999999887766 55544 43332 221
Q ss_pred ccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccEEEEEe
Q 011057 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSL 380 (494)
Q Consensus 301 ~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~ 380 (494)
.......+... .+. .....+..++++.. .+..++..++++++.+.|++++++++...+...+++.+.+
T Consensus 229 ~~~~~~~~~~~------~~~-~~~~~a~~~~l~~~-----~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~ 296 (359)
T 3pj0_A 229 KIWKRRYGGDL------ISL-YPYILSADYYFEKR-----IGKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYF 296 (359)
T ss_dssp HHHHHHTTCCC------SCC-HHHHHHHHHHHHHH-----GGGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEE
T ss_pred HHHHHHhCCCc------chh-HHHHHHHHHHHHHH-----HHHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEe
Confidence 11001111110 001 11122222333221 2445567788899999999998898863333567888877
Q ss_pred cCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHH
Q 011057 381 KDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLA 430 (494)
Q Consensus 381 ~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~i 430 (494)
......+..++.+.|.++||.+.....+.. .+..++|++++..++..+.
T Consensus 297 ~~~~~~~~~~l~~~l~~~GV~v~~g~~~~~-~~~~~~r~~i~~~~~~~~~ 345 (359)
T 3pj0_A 297 ENSADEIGAILTKIQDETGVGISGYLQEKS-ADVCAFEVSVGDAFAEIPA 345 (359)
T ss_dssp SSCHHHHHHHHHHHHHHHCEECCSCCEEEE-TTEEEEEEECCTTGGGSCH
T ss_pred cCccchhHHHHHHHHHhcCcEecCCccccC-CCceEEEEEecCccccCCH
Confidence 542223467899999999998865433322 4567899998755443333
No 167
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.90 E-value=1.5e-21 Score=198.32 Aligned_cols=339 Identities=12% Similarity=-0.041 Sum_probs=218.7
Q ss_pred cCCCCCcccccc----cCCChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhH
Q 011057 53 DGNPRLNLASFV----TTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSE 128 (494)
Q Consensus 53 ~~~~~~~~~~~~----~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~ 128 (494)
+++.++++.++. ..+.+|.+.+++.+.++........ ...+...+++++|++++|.+ .+++|+||++
T Consensus 55 ~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~--~~~~~~~~l~~~la~~~g~~-------~v~~~~ggte 125 (420)
T 2pb2_A 55 QGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNV--FTNEPALRLGRKLIDATFAE-------RVLFMNSGTE 125 (420)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTT--SCCHHHHHHHHHHHHHSSCS-------EEEEESSHHH
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHhcccccCc--cCCHHHHHHHHHHHhhCCCC-------eEEEeCCHHH
Confidence 455555555431 1234688999998888653321111 23356667888899999854 3899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCC-cchHHHHHHHHcCCe------------eEEEeccCCccccCHHHH
Q 011057 129 AIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGAN-VQVCWEKFARYFEVE------------LKEVKLSEGYYVMDPVKA 195 (494)
Q Consensus 129 a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~-~h~s~~~~~~~~G~~------------v~~v~~~~~~~~~d~~~L 195 (494)
|+..++.+++..+..+ |. ..+++|++.++ .|.....++...|.. +..++. .|+++|
T Consensus 126 A~~~al~~~~~~~~~~----~~-~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~------~d~~~l 194 (420)
T 2pb2_A 126 ANETAFKLARHYACVR----HS-PFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF------NDLHAV 194 (420)
T ss_dssp HHHHHHHHHHHHHHHH----TC-TTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT------TCHHHH
T ss_pred HHHHHHHHHHHHhhhc----cC-CCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC------CCHHHH
Confidence 9999998886532211 11 11246766554 555555555555653 444442 389999
Q ss_pred HHhhhhCCeEEEEeeCCCCccc----ccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEE
Q 011057 196 VEMVDENTICVAAILGSTLNGE----FEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSI 271 (494)
Q Consensus 196 ~~~i~~~t~~vv~~~~~~~tG~----~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~ 271 (494)
++++++++++|+++.+++++|. .+++++|.++|+++ |+++++|++|.++.. .......+......|++
T Consensus 195 e~~i~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~------gi~lI~Dev~~g~~~--~g~~~~~~~~~~~~dii 266 (420)
T 2pb2_A 195 KAVMDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEH------QALLVFDEVQCGMGR--TGDLFAYMHYGVTPDIL 266 (420)
T ss_dssp HHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSHHHHHTCCCSEE
T ss_pred HHHhccCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHc------CCEEEEEcCCcCccc--CCcHHHHHhcCCCCCeE
Confidence 9999888888888777777776 36799999999999 999999999975321 11111111111136777
Q ss_pred EEcCcccCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHH
Q 011057 272 NVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENA 351 (494)
Q Consensus 272 ~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a 351 (494)
++ +|++.++.++|+++++++ .. +.+.. . ....+ .+.+.....++.++|+.+.. ++..++..+++
T Consensus 267 t~--sK~l~~G~~iG~~~~~~~-l~-~~l~~------~-~~~~t--~~~~~~~~aa~~a~L~~~~~---~~~~~~~~~~~ 330 (420)
T 2pb2_A 267 TS--AKALGGGFPVSAMLTTQE-IA-SAFHV------G-SHGST--YGGNPLACAVAGAAFDIINT---PEVLQGIHTKR 330 (420)
T ss_dssp EE--CGGGGTTSCCEEEEECHH-HH-TTCC-----------CCE--ECCCHHHHHHHHHHHHHHSS---HHHHHHHHHHH
T ss_pred Ee--cccccCCCceEEEEEhHH-HH-HhhcC------C-CcCcc--cCcCHHHHHHHHHHHHHHHh---ccHHHHHHHHH
Confidence 54 699887778999988653 22 21110 0 00111 22233444555666666554 35677788888
Q ss_pred HHHHHHHhhC----CCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCCh
Q 011057 352 MVLKEGLEKT----GRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSR 427 (494)
Q Consensus 352 ~~l~~~L~~~----~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~ 427 (494)
+++.+.|+++ +.+..... ..+++.+.+......+..++.++|.++|+.+... +..++|+++...+++
T Consensus 331 ~~l~~~L~~~~~~~~~~~~~~~--~g~~~~v~~~~~~~~~~~~l~~~l~~~Gi~v~~~-------~~~~iRl~~~~~~t~ 401 (420)
T 2pb2_A 331 QQFVQHLQAIDEQFDIFSDIRG--MGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNA-------GADVMRFAPSLVVEE 401 (420)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEE--ETTEEEEEECGGGTTCHHHHHHHHHHTTEECEES-------STTEEEECCCTTCCH
T ss_pred HHHHHHHHHHHhcCCCeEEEEe--cceEEEEEECCCchHHHHHHHHHHHHCCCEEEeC-------CCCEEEEECCCCCCH
Confidence 8999888775 32222222 3567788874321125778999999999986432 235799998778899
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011057 428 TLAERLVLDITKVLHEL 444 (494)
Q Consensus 428 ~~id~~i~~l~~~~~~l 444 (494)
++++++++.|+++++++
T Consensus 402 eei~~~~~~l~~~l~~~ 418 (420)
T 2pb2_A 402 ADIHEGMQRFAQAVGKV 418 (420)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988765
No 168
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.90 E-value=3.8e-22 Score=202.80 Aligned_cols=348 Identities=14% Similarity=0.046 Sum_probs=216.6
Q ss_pred CCcccccccC----CChHHHHHHHHHHh-c-c--cCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhH
Q 011057 57 RLNLASFVTT----WMEPECDKLMMAAI-N-K--NYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSE 128 (494)
Q Consensus 57 ~~~~~~~~~~----~~~p~~~~~~~~~~-~-~--~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~ 128 (494)
.++|+.+.+. +.++.+.+++.+.+ . . ....|....+..++++ .+++++|.++ ..+++|+|+++
T Consensus 34 ~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~----~ia~~~~~~~-----~~i~~t~G~~~ 104 (422)
T 3d6k_A 34 SLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRE----LWAEALGLPA-----DLVVAQDGSSL 104 (422)
T ss_dssp CEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHH----HHHHHHTCCG-----GGEEECSSCHH
T ss_pred eEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHH----HHHHHhCCCh-----hHEEEecchHH
Confidence 4566666553 22334555554332 1 1 1223444445655554 4777778765 45899999999
Q ss_pred HH--HHHHHHHHHHHHHHHHhcCCCC----CCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhh-
Q 011057 129 AI--MLAGLAFKRKWQNKRKAEGKPF----DKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDE- 201 (494)
Q Consensus 129 a~--~~a~~a~~~~~~~~~~~~g~~~----~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~- 201 (494)
++ .+.+.++...+ ..|... ..++|+++.++|..+...++..|++++.+|++++ + +|+++|++++++
T Consensus 105 al~l~~~~~~l~~~~-----~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~-g-~d~~~l~~~l~~~ 177 (422)
T 3d6k_A 105 NIMFDLISWSYTWGN-----NDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMTDE-G-PDMGVVRELVKDP 177 (422)
T ss_dssp HHHHHHHHHHHHHCC-----TTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT-E-ECHHHHHHHHTST
T ss_pred HHHHHHHHHHhcCcc-----cccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEecCCCCC-C-CCHHHHHHHHhcC
Confidence 97 33434442200 001000 0236999999999999999999999999999875 3 999999999986
Q ss_pred CCeEEE-EeeCCCCcccccCHH---HHHHHHH-HhhcccCCCceEEEecccccccccccCCcc-cc-c----ccCCCceE
Q 011057 202 NTICVA-AILGSTLNGEFEDVK---LLNDLLA-EKNKETGWDTPIHVDAASGGFIAPFLYPEL-EW-D----FRLPLVKS 270 (494)
Q Consensus 202 ~t~~vv-~~~~~~~tG~~~~l~---~I~~la~-~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~-~----~~~~~~D~ 270 (494)
++++|+ +++++||||.+.+.+ +|+++|+ ++ ++++++|++|+.+......... .. . ......++
T Consensus 178 ~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~------~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 251 (422)
T 3d6k_A 178 QVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAP------DFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFW 251 (422)
T ss_dssp TEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSST------TCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEE
T ss_pred CCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhcc------CCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEE
Confidence 677777 578999999998876 6777777 88 9999999999742111110000 10 1 12234577
Q ss_pred EEEcCcccCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcH-----hHHHHHHH
Q 011057 271 INVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGF-----EGYRNVME 345 (494)
Q Consensus 271 ~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~-----~g~~~~~~ 345 (494)
+..+++|+++++.++|+++++. ..+ ..+....... ..+ .+.+++.++...+.. +.+++..+
T Consensus 252 ~~~S~SK~~~~GlriG~~~~~~-~l~-~~l~~~~~~~---------~~~---~~~~~q~a~~~~l~~~~~~~~~~~~~~~ 317 (422)
T 3d6k_A 252 FMSSTSKITHAGSGVSFFASSK-ENI-EWYASHANVR---------GIG---PNKLNQLAHAQFFGDVAGLKAHMLKHAA 317 (422)
T ss_dssp EEEESTTTSCTTSSCEEEECCH-HHH-HHHHHHHHHH---------CSC---CCHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred EEcChhhhcCcccceEEEEeCH-HHH-HHHHHHHHhh---------cCC---CCHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 7888999977777899998653 222 2111110000 011 123344555555543 22344455
Q ss_pred HHHHHHHHHHHHHhh----CCCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeec-cc-cCCCC-CCceEEE
Q 011057 346 NCHENAMVLKEGLEK----TGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPA-YT-MPADA-QHITVLR 418 (494)
Q Consensus 346 ~~~~~a~~l~~~L~~----~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~-~~-~~~~~-~~~~~lR 418 (494)
.+.++++++.+.|.+ ++++++..+. ...++.+.+... +...+.+.|.++|+.+.. .. ++... .+..++|
T Consensus 318 ~~~~~~~~l~~~L~~~l~~~~~~~~~~p~-~g~~~~~~~~~~---~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iR 393 (422)
T 3d6k_A 318 SLAPKFERVLEILDSRLSEYGVAKWTSPT-GGYFISVDVVPG---TASRVVELAKEAGIALTGAGSSFPLHNDPNNENIR 393 (422)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTCEEECCCS-BSSCEEEEESTT---CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEE
T ss_pred HHHHHHHHHHHHHHHhcCcCCceEEeCCC-cceEEEEECCCC---CHHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEE
Confidence 555566666666654 4446655443 455677777532 567888999999998754 21 11011 1346899
Q ss_pred EEeccCCChHHHHHHHHHHHHHHHHHh
Q 011057 419 VVIREDFSRTLAERLVLDITKVLHELD 445 (494)
Q Consensus 419 vs~~~~~t~~~id~~i~~l~~~~~~l~ 445 (494)
++++. .+.++++++++.|+++++++.
T Consensus 394 is~~~-~~~e~i~~~~~~l~~~l~~~~ 419 (422)
T 3d6k_A 394 LAPSL-PPVAELEVAMDGFATCVLMAA 419 (422)
T ss_dssp ECCSS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred EecCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 99986 789999999999999887664
No 169
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.90 E-value=5.4e-22 Score=201.73 Aligned_cols=288 Identities=14% Similarity=-0.001 Sum_probs=194.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHH----
Q 011057 95 ELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKF---- 170 (494)
Q Consensus 95 ~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~---- 170 (494)
...+++++++++++|.+. .+++++|++|+.+++.++.+ .+++|+++...|.++...
T Consensus 114 ~~~~~l~~~lA~l~g~~~-------~v~~~sG~~Ai~~al~~l~~-------------~Gd~Vi~~~~~y~~~~~~~~~~ 173 (445)
T 1qgn_A 114 PTTVVLEEKISALEGAES-------TLLMASGMCASTVMLLALVP-------------AGGHIVTTTDCYRKTRIFIETI 173 (445)
T ss_dssp HHHHHHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHSC-------------SSCEEEEETTSCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHHhC-------------CCCEEEEcCCCchhHHHHHHHH
Confidence 445567788999999853 56667777999988876632 126899999999876653
Q ss_pred HHHcCCeeEEEeccCCccccCHHHHHHhhhhCC-eEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEEEeccccc
Q 011057 171 ARYFEVELKEVKLSEGYYVMDPVKAVEMVDENT-ICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGG 249 (494)
Q Consensus 171 ~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t-~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~ 249 (494)
++..|++++.++.+ |+++|+++++++| ++|++++++|++|.+.|+++|+++|+++ |+++++|++|+.
T Consensus 174 ~~~~G~~v~~v~~~------d~~~l~~ai~~~tv~lV~le~p~NptG~v~dl~~I~~la~~~------g~~livD~a~~~ 241 (445)
T 1qgn_A 174 LPKMGITATVIDPA------DVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEK------GALVCIDGTFAT 241 (445)
T ss_dssp GGGGTCEEEEECSS------CHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHT------TCEEEEECTTTC
T ss_pred HHHcCCEEEEeCCC------CHHHHHHHhccCCCCEEEEeCCCCCCCcccCHHHHHHHHHHc------CCEEEEECCCcc
Confidence 45679999888753 8899999999999 9999999999999999999999999999 999999999986
Q ss_pred ccccccCCcccccccCCCceEEEEcCcccCCcCC--ceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHH
Q 011057 250 FIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYA--GIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIA 327 (494)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~--g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a 327 (494)
+.. ..+ + ..++|+++.++||+++++. .+|+++.++. .+ ..+.......+ +..+ ...
T Consensus 242 ~~~--~~~-----~-~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~-l~-~~l~~~~~~~g---------~~~~---~~~ 299 (445)
T 1qgn_A 242 PLN--QKA-----L-ALGADLVLHSATKFLGGHNDVLAGCISGPLK-LV-SEIRNLHHILG---------GALN---PNA 299 (445)
T ss_dssp TTT--CCT-----T-TTTCSEEEECTTTTTTCSSSCCCEEEEECHH-HH-HHHHHHHHHHC---------CCCC---HHH
T ss_pred ccc--CCc-----c-ccCCEEEEECCcccccccccceEEEEEECHH-HH-HHHHHHHHHhC---------CCCC---HHH
Confidence 532 111 1 1368999999999986443 2788877542 22 11111000010 1111 122
Q ss_pred HHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCe-EEeecC---------------CCccEEEEEecCCCCCCHHHH
Q 011057 328 QYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRF-NIVSKD---------------EGVPLVAFSLKDNKRHDEFEV 391 (494)
Q Consensus 328 ~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~-~~~~~~---------------~~~~~v~f~~~~~~~~~~~~l 391 (494)
.|.+++.+ +.+..++++..+++.++.+.|++++++ ++..+. ...++++|.+.+. ..+...+
T Consensus 300 a~~~~~~l--~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~-~~~~~~~ 376 (445)
T 1qgn_A 300 AYLIIRGM--KTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGD-LLTTAKF 376 (445)
T ss_dssp HHHHHHHG--GGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSC-HHHHHHH
T ss_pred HHHHHHhH--HHHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCC-HHHHHHH
Confidence 33333333 334566777788899999999999877 454431 1467999998641 0123455
Q ss_pred HHHHHhcCceeeccc------cC---------C-----CCCCceEEEEEeccCCChHHHHHHHHHHHHHHHH
Q 011057 392 AELLRRFGWIVPAYT------MP---------A-----DAQHITVLRVVIREDFSRTLAERLVLDITKVLHE 443 (494)
Q Consensus 392 ~~~L~~~Gi~v~~~~------~~---------~-----~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~ 443 (494)
.+.|...++.++... .| . .......+|+|++ .|++++++++|+++++.
T Consensus 377 l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 377 VDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQALDS 444 (445)
T ss_dssp HHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHHHHHH
T ss_pred HHhCCCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHhh
Confidence 555543344322110 00 0 0011368999997 47899999999998864
No 170
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.89 E-value=1.3e-20 Score=191.92 Aligned_cols=339 Identities=13% Similarity=-0.011 Sum_probs=205.8
Q ss_pred CCCCCcccccc---cC-CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHH
Q 011057 54 GNPRLNLASFV---TT-WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEA 129 (494)
Q Consensus 54 ~~~~~~~~~~~---~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a 129 (494)
|+.++++.++. .. +.+|.+.+++.+.++........+ ..+...++++.|++++|.+ .+++|+||++|
T Consensus 64 G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~g~~-------~v~~~~sGseA 134 (433)
T 1z7d_A 64 DKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAF--FSVPLGICERYLTNLLGYD-------KVLMMNTGAEA 134 (433)
T ss_dssp CCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTTS--EEHHHHHHHHHHHHHHTCS-------EEEEESSHHHH
T ss_pred CCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCccCCc--CCHHHHHHHHHHHhhcCCC-------eEEEeCCHHHH
Confidence 44445555532 11 257889999988887633211112 3345566778899998854 38999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCC-cchHHHHHHHHcC------------CeeEEEeccCCccccCHHHHH
Q 011057 130 IMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGAN-VQVCWEKFARYFE------------VELKEVKLSEGYYVMDPVKAV 196 (494)
Q Consensus 130 ~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~-~h~s~~~~~~~~G------------~~v~~v~~~~~~~~~d~~~L~ 196 (494)
+..++.+++...... .|....+++|++.++ .|.+...++...| .++..+|. .|+++|+
T Consensus 135 ~~~al~~a~~~~~~~---~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~------~d~~~le 205 (433)
T 1z7d_A 135 NETAYKLCRKWGYEV---KKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY------DDLEALE 205 (433)
T ss_dssp HHHHHHHHHHHHHHT---SCCCTTCCEEEEETTC--------------------------CEEEECT------TCHHHHH
T ss_pred HHHHHHHHHHHhhhc---cCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC------CCHHHHH
Confidence 999998875421110 121112356776654 4555544444444 23444442 3899999
Q ss_pred Hhh-hhCCeEEEEeeCCCCccccc----CHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEE
Q 011057 197 EMV-DENTICVAAILGSTLNGEFE----DVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSI 271 (494)
Q Consensus 197 ~~i-~~~t~~vv~~~~~~~tG~~~----~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~ 271 (494)
+++ .+++++|++...++++|.+. ++++|.++|+++ |+++++|++|.++.. .......+..-...|.+
T Consensus 206 ~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~------g~llI~DEv~~g~g~--~g~~~~~~~~~~~~di~ 277 (433)
T 1z7d_A 206 EELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKY------NVLFVADEVQTGLGR--TGKLLCVHHYNVKPDVI 277 (433)
T ss_dssp HHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSGGGGGTCCCSEE
T ss_pred HHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHc------CCEEEEecCccCCCc--CCcchhhHhcCCCCCEE
Confidence 999 46666666655556789865 799999999999 999999999975321 11111111111246777
Q ss_pred EEcCcccCCcC-CceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHH
Q 011057 272 NVSGHKYGLVY-AGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHEN 350 (494)
Q Consensus 272 ~~~~hK~l~~p-~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~ 350 (494)
+ +.|++.++ ..+|+++++++ .+ +.+. ......+ ++.+.....+..++++.+..+ +..++..++
T Consensus 278 t--~sK~l~~G~~~~G~v~~~~~-~~-~~l~-------~~~~~~t--~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~ 341 (433)
T 1z7d_A 278 L--LGKALSGGHYPISAVLANDD-IM-LVIK-------PGEHGST--YGGNPLAASICVEALNVLINE---KLCENAEKL 341 (433)
T ss_dssp E--ECGGGGTTSSCCEEEEECHH-HH-TTCC-------TTCCCCT--TTTCHHHHHHHHHHHHHHHHT---THHHHHHHH
T ss_pred E--ECccccCCCCCeEEEEECHH-HH-hhhc-------ccccccc--CCCCHHHHHHHHHHHHHHHhc---cHHHHHHHH
Confidence 5 45988765 56899887652 22 1111 0001111 222334445555666665443 456777888
Q ss_pred HHHHHHHHhhC----CCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCC
Q 011057 351 AMVLKEGLEKT----GRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFS 426 (494)
Q Consensus 351 a~~l~~~L~~~----~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t 426 (494)
++++.++|+++ +.+..... ..+++.+.+... ..+..++.++|.++|+.+... +..++|+++...+|
T Consensus 342 ~~~l~~~L~~l~~~~~~~~~~~~--~g~~~~i~~~~~-~~~~~~~~~~l~~~Gv~v~~~-------~~~~iRi~~~~~~t 411 (433)
T 1z7d_A 342 GGPFLENLKRELKDSKIVRDVRG--KGLLCAIEFKNE-LVNVLDICLKLKENGLITRDV-------HDKTIRLTPPLCIT 411 (433)
T ss_dssp HHHHHHHHHHHHTTCTTEEEEEE--ETTEEEEEECTT-TCCHHHHHHHHHHTTEECCEE-------TTTEEEECCCTTCC
T ss_pred HHHHHHHHHHHHHhCCCeEEEEe--eeeEEEEEEccC-hhHHHHHHHHHHHCCeEEecC-------CCCEEEEECCcCCC
Confidence 88998888775 22222222 356788887532 135778999999999986431 24579999888889
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 011057 427 RTLAERLVLDITKVLHEL 444 (494)
Q Consensus 427 ~~~id~~i~~l~~~~~~l 444 (494)
+++++++++.|+++++++
T Consensus 412 ~e~i~~~l~~l~~~l~~~ 429 (433)
T 1z7d_A 412 KEQLDECTEIIVKTVKFF 429 (433)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999988765
No 171
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.89 E-value=5.8e-22 Score=199.32 Aligned_cols=286 Identities=15% Similarity=0.050 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHH----
Q 011057 96 LQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFA---- 171 (494)
Q Consensus 96 le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~---- 171 (494)
..+++++.+++++|.+. +++++||++|+..++.++.. .+++|+++.+.|.+....+
T Consensus 67 ~~~~l~~~la~~~g~~~-------~~~~~sGt~A~~~al~~~~~-------------~gd~Vi~~~~~y~~~~~~~~~~~ 126 (392)
T 3qhx_A 67 TRTALEAALAAVEDAAF-------GRAFSSGMAAADCALRAMLR-------------PGDHVVIPDDAYGGTFRLIDKVF 126 (392)
T ss_dssp HHHHHHHHHHHHTTCSE-------EEEESSHHHHHHHHHHHHCC-------------TTCEEEEETTCCHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHhCCCc-------EEEECCHHHHHHHHHHHHhC-------------CCCEEEEeCCCcchHHHHHHHHH
Confidence 34457777999999863 88999999999988877632 1258999999998766655
Q ss_pred HHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEEEeccccccc
Q 011057 172 RYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFI 251 (494)
Q Consensus 172 ~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~ 251 (494)
+..|++++.++.+ |+++|++++++++++|++..++|++|.+.|+++|+++|+++ |+++|+|++|+.+.
T Consensus 127 ~~~g~~~~~v~~~------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~------g~~li~D~~~~~~~ 194 (392)
T 3qhx_A 127 TGWNVEYTPVALA------DLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADS------SAKVLVDNTFASPA 194 (392)
T ss_dssp GGGTCEEEEECTT------CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHH------TCEEEEECTTTCTT
T ss_pred HhcCcEEEEeCCC------CHHHHHHhhCCCCeEEEEECCCCCCcEEecHHHHHHHHHHc------CCEEEEECCCcccc
Confidence 6679998888753 88999999999999999999999999999999999999999 99999999998653
Q ss_pred ccccCCcccccccCCCceEEEEcCcccCCcCCc--eEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHH
Q 011057 252 APFLYPELEWDFRLPLVKSINVSGHKYGLVYAG--IGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQY 329 (494)
Q Consensus 252 ~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~ 329 (494)
. .... . .++|+++.++||++.++.+ +|+++.+++... ..+....... +.. ...+.++
T Consensus 195 ~---~~~~--~---~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~-~~l~~~~~~~----------g~~--~~~~~~~ 253 (392)
T 3qhx_A 195 L---QQPL--S---LGADVVLHSTTKYIGGHSDVVGGALVTNDEELD-QSFAFLQNGA----------GAV--PGPFDAY 253 (392)
T ss_dssp T---CCGG--G---GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHH-HHHHHHHHHH----------CCC--CCHHHHH
T ss_pred c---CChH--H---hCCcEEEEcCccccCCCCCceEEEEEECcHHHH-HHHHHHHHhc----------CCC--CCHHHHH
Confidence 2 1111 1 2689999999999976642 688777643322 1111100000 111 1123344
Q ss_pred HHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCC----------------CccEEEEEecCCCCCCHHHHHH
Q 011057 330 YQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDE----------------GVPLVAFSLKDNKRHDEFEVAE 393 (494)
Q Consensus 330 ~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~----------------~~~~v~f~~~~~~~~~~~~l~~ 393 (494)
.+++.+ +.+..+.++..+++.++.+.|++.+.+..+..+. ..++++|.+.+. ......+.+
T Consensus 254 ~~~~~l--~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~-~~~~~~~~~ 330 (392)
T 3qhx_A 254 LTMRGL--KTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAG-RTAAEQLCA 330 (392)
T ss_dssp HHHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTC-HHHHHHHHH
T ss_pred HHHhhh--hHHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCc-HHHHHHHHH
Confidence 444433 2345667888889999999999988775443221 145889998642 123556777
Q ss_pred HHHhcCceeeccc------cCCCC-----------CCceEEEEEeccCCChHHHHHHHHHHHHHH
Q 011057 394 LLRRFGWIVPAYT------MPADA-----------QHITVLRVVIREDFSRTLAERLVLDITKVL 441 (494)
Q Consensus 394 ~L~~~Gi~v~~~~------~~~~~-----------~~~~~lRvs~~~~~t~~~id~~i~~l~~~~ 441 (494)
.|...|+.++... .|... .....+|+|++... ++.++++|.+++
T Consensus 331 ~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~----~~~~i~~l~~al 391 (392)
T 3qhx_A 331 KTNIFILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIED----VADLLDDLKQAL 391 (392)
T ss_dssp HCSSSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSC----HHHHHHHHHHHH
T ss_pred hCCCceECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEeccCC----HHHHHHHHHHHh
Confidence 7766665543211 11100 12467999998644 444455555543
No 172
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.89 E-value=4.3e-21 Score=193.19 Aligned_cols=335 Identities=13% Similarity=0.012 Sum_probs=210.4
Q ss_pred cCCCCCccccccc----CCChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhH
Q 011057 53 DGNPRLNLASFVT----TWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSE 128 (494)
Q Consensus 53 ~~~~~~~~~~~~~----~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~ 128 (494)
+++.++.+.+..+ .+.+|.+.+++.+.++.....+.. .......++++++++++|.+ .+++|+||++
T Consensus 34 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~la~~~~~~-------~v~~~~gg~e 104 (395)
T 3nx3_A 34 KAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNL--YYNENIAAAAKNLAKASALE-------RVFFTNSGTE 104 (395)
T ss_dssp TCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCTT--SBCHHHHHHHHHHHHHHTCS-------EEEEESSHHH
T ss_pred CCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccccc--cCCHHHHHHHHHHHHhcCCC-------eEEEeCCHHH
Confidence 4444555554311 134688999998888764332222 23456667888999999853 3999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCc-chHHHHHHHHc------------CCeeEEEeccCCccccCHHHH
Q 011057 129 AIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANV-QVCWEKFARYF------------EVELKEVKLSEGYYVMDPVKA 195 (494)
Q Consensus 129 a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~-h~s~~~~~~~~------------G~~v~~v~~~~~~~~~d~~~L 195 (494)
|+..++.+++..+.. .| ..+++|++.++. |.....+.... +.++..++. .|+++|
T Consensus 105 a~~~al~~~~~~~~~----~g--~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l 172 (395)
T 3nx3_A 105 SIEGAMKTARKYAFN----KG--VKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY------NDISSV 172 (395)
T ss_dssp HHHHHHHHHHHHHHH----TT--CTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT------TCHHHH
T ss_pred HHHHHHHHHHHHhhc----cC--CCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC------CCHHHH
Confidence 999999887654321 11 123567665554 43333332222 233444442 379999
Q ss_pred HHhhhhCCeEEEEeeCCCCcccccC----HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEE
Q 011057 196 VEMVDENTICVAAILGSTLNGEFED----VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSI 271 (494)
Q Consensus 196 ~~~i~~~t~~vv~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~ 271 (494)
++++++++++|++..+++++|.+.+ +++|.++|++| |+++|+|++|.++.. .......+......|.+
T Consensus 173 ~~~l~~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~------~~~li~Dev~~~~g~--~g~~~~~~~~~~~~d~~ 244 (395)
T 3nx3_A 173 EKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEK------DILLIADEIQCGMGR--SGKFFAYEHAQILPDIM 244 (395)
T ss_dssp HTTCCTTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGGTCCCSEE
T ss_pred HHhccCCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHc------CCEEEEEecccCCCc--CCcchhHHhcCCCCCEE
Confidence 9999888888888888888999977 99999999999 999999999986421 11111111111236777
Q ss_pred EEcCcccCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHH
Q 011057 272 NVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENA 351 (494)
Q Consensus 272 ~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a 351 (494)
+++ |.+.++.++|+++.+++ .+.+.+.. .. ...+ ...+.....+..++++.+..+ +..++..++.
T Consensus 245 t~s--K~~~~G~~~G~~~~~~~-~~~~~~~~---~~----~~~~--~~~~~~~~~aa~aal~~~~~~---~~~~~~~~~~ 309 (395)
T 3nx3_A 245 TSA--KALGCGLSVGAFVINQK-VASNSLEA---GD----HGST--YGGNPLVCAGVNAVFEIFKEE---KILENVNKLT 309 (395)
T ss_dssp EEC--GGGTTTSCCEEEEECHH-HHHHHSCT---TC----CSSC--BSCCHHHHHHHHHHHHHHHHT---THHHHHHHHH
T ss_pred Eec--ccccCCCceEEEEEchh-hhhhhcCC---cc----cCCC--CCCCHHHHHHHHHHHHHHHhh---HHHHHHHHHH
Confidence 654 77767788999887653 20111110 00 0011 222334444455555554333 3344555555
Q ss_pred HHHHHHHh----hCCCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCCh
Q 011057 352 MVLKEGLE----KTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSR 427 (494)
Q Consensus 352 ~~l~~~L~----~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~ 427 (494)
+++++.|+ .++.+..... ..+++.+.+.. ..+..++.+.|.++|+.+... +..++|++.+..+|+
T Consensus 310 ~~~~~~l~~~~~~~~~~~~~~~--~g~~~~~~~~~--~~~~~~~~~~l~~~Gi~v~~~-------~~~~iRi~~~~~~t~ 378 (395)
T 3nx3_A 310 PYLEQSLDELINEFDFCKKRKG--LGFMQGLSLDK--SVKVAKVIQKCQENALLLISC-------GENDLRFLPPLILQK 378 (395)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEE--ETTEEEEEECT--TSCHHHHHHHHHHTTEECEEE-------TTTEEEECCCTTCCH
T ss_pred HHHHHHHHHHHHhCCCeEEEEe--EEEEEEEEeCC--cchHHHHHHHHHHCCCEEecC-------CCCEEEEECCCCCCH
Confidence 55555554 4454443332 35678888754 246789999999999987542 245799998888899
Q ss_pred HHHHHHHHHHHHHHH
Q 011057 428 TLAERLVLDITKVLH 442 (494)
Q Consensus 428 ~~id~~i~~l~~~~~ 442 (494)
++++++++.|+++++
T Consensus 379 e~i~~~l~~l~~~l~ 393 (395)
T 3nx3_A 379 EHIDEMSEKLRKALK 393 (395)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998875
No 173
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.82 E-value=3.6e-25 Score=222.89 Aligned_cols=343 Identities=12% Similarity=0.015 Sum_probs=225.9
Q ss_pred CCCcccccccC-CChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHH
Q 011057 56 PRLNLASFVTT-WMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAG 134 (494)
Q Consensus 56 ~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~ 134 (494)
..++|+.+.+. +++|.+.+++.+++......|... ..++++++.+++++.+|.+.+ ...+++|+|+++|+.+++
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~---~~~v~~~~g~~~a~~~~~ 106 (392)
T 3b1d_A 32 QLLPAWIADMDFEVMPEVKQAIHDYAEQLVYGYTYA--SDELLQAVLDWEKSEHQYSFD---KEDIVFVEGVVPAISIAI 106 (392)
Confidence 33444444433 345678888887776533333322 667888888888887784331 135889999999999888
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccC-C-ccccCHHHHHHhhh-hCCeEEEEeeC
Q 011057 135 LAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSE-G-YYVMDPVKAVEMVD-ENTICVAAILG 211 (494)
Q Consensus 135 ~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~-~-~~~~d~~~L~~~i~-~~t~~vv~~~~ 211 (494)
.++..+ +++|+++.++|..+...++..|++++.+++++ + ++.+|+++|+++++ .++++|+++++
T Consensus 107 ~~~~~~-------------gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~ 173 (392)
T 3b1d_A 107 QAFTKE-------------GEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNP 173 (392)
Confidence 877432 25799999999999999999999999998853 2 35699999999997 57888889999
Q ss_pred CCCcccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCccc--ccccC--CCceEEEEcCcccCC-cCC
Q 011057 212 STLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELE--WDFRL--PLVKSINVSGHKYGL-VYA 283 (494)
Q Consensus 212 ~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~~~--~~~D~~~~~~hK~l~-~p~ 283 (494)
+||||.+.+ +++|.++|+++ ++++++|++|+.+... ..... ..+.. ...+.+..+++|++. ++.
T Consensus 174 ~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ 245 (392)
T 3b1d_A 174 HNPGGRVWEREVLEQIGHLCQKH------HVILVSDEIHQDLTLF--GHEHVSFNTVSPDFKDFALVLSSATKTFNIAGT 245 (392)
Confidence 999999865 89999999999 9999999999876421 10000 01111 234566778999985 667
Q ss_pred ceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHh--cHhHHHHHHHHHHHHHHHHHHHHhh-
Q 011057 284 GIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRL--GFEGYRNVMENCHENAMVLKEGLEK- 360 (494)
Q Consensus 284 g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l--~~~g~~~~~~~~~~~a~~l~~~L~~- 360 (494)
++|+++++++..... +... ...+++ ++ .+.+++.+++..+ +.+.+++..++..++++++.+.|++
T Consensus 246 r~G~~~~~~~~~~~~-~~~~-------~~~~~~-~~---~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 313 (392)
T 3b1d_A 246 KNSYAIIENPTLCAQ-FKHQ-------QLVNNH-HE---VSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVEYFAQE 313 (392)
Confidence 889998765433311 1110 000000 11 1222333333333 2345667777888899999999988
Q ss_pred CCCeEEeecCCCccEEE-EEecCCCCCCHHHHHHHHH-hcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHH
Q 011057 361 TGRFNIVSKDEGVPLVA-FSLKDNKRHDEFEVAELLR-RFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDIT 438 (494)
Q Consensus 361 ~~~~~~~~~~~~~~~v~-f~~~~~~~~~~~~l~~~L~-~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~ 438 (494)
++++++..+ ..+++. +.+.. .+.+..++.++|. ++|+.+....... ..+..++|++++. ++++++.+++.|+
T Consensus 314 ~~~~~~~~~--~~~~~~~i~~~~-~~~~~~~l~~~l~~~~gi~v~~g~~f~-~~~~~~iRi~~~~--~~e~i~~~l~~l~ 387 (392)
T 3b1d_A 314 APRLKVMKP--QGTYLIWLDFSD-YGLTDDALFTLLHDQAKVILNRGSDYG-SEGELHARLNIAA--PKSLVEEICKRIV 387 (392)
Confidence 666776544 345554 55532 1245668899996 7899875433221 1245679999874 4677777776666
Q ss_pred HHHH
Q 011057 439 KVLH 442 (494)
Q Consensus 439 ~~~~ 442 (494)
++++
T Consensus 388 ~~l~ 391 (392)
T 3b1d_A 388 CCLP 391 (392)
Confidence 6543
No 174
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.89 E-value=3e-21 Score=192.91 Aligned_cols=340 Identities=15% Similarity=0.119 Sum_probs=209.3
Q ss_pred HHHHHHHhhhhcCC-CCCcccccc-cCCChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcc
Q 011057 42 AYQIINDELMLDGN-PRLNLASFV-TTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAV 119 (494)
Q Consensus 42 ~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~ 119 (494)
.++.+++.+...|. +.+++.... +.+.++.+.+++. . + .+...+++++++++++++|.++ ...
T Consensus 14 ~~~~~~~~i~~~g~~~v~~~~~~~~~~~~~~~v~~a~~-----~---~---~~~~~~~~~~~~~~a~~~g~~~----~~~ 78 (374)
T 2aeu_A 14 ARKIILEILNEKGRDALYDLSGLSGGFLIDEKDKALLN-----T---Y---IGSSYFAEKVNEYGLKHLGGDE----NDK 78 (374)
T ss_dssp HHHHHHHHHHHTCGGGCEECSSCCCCCCCCHHHHHHHT-----S---T---THHHHHHHHHHHHHHHHHTCCT----TEE
T ss_pred HHHHHHHHHhccCccceeeecccCCCCCCCHHHHHHHH-----H---h---cCchHHHHHHHHHHHHHhCCCC----cce
Confidence 34456666655565 566655543 3455677777764 1 1 1224566788888999999841 124
Q ss_pred eeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCc---chHHHHHHHHcCCeeEEEeccCCccccCHHHHH
Q 011057 120 GVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANV---QVCWEKFARYFEVELKEVKLSEGYYVMDPVKAV 196 (494)
Q Consensus 120 ~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~---h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~ 196 (494)
+++|+||++|+.+++.++ + +++|+++.+. |.++...++..|++++.+ .|+++|+
T Consensus 79 ~~~~~ggt~a~~~~~~~~--~-------------gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v--------~d~~~l~ 135 (374)
T 2aeu_A 79 CVGFNRTSSAILATILAL--K-------------PKKVIHYLPELPGHPSIERSCKIVNAKYFES--------DKVGEIL 135 (374)
T ss_dssp EEEESSHHHHHHHHHHHH--C-------------CSEEEEECSSSSCCTHHHHHHHHTTCEEEEE--------SCHHHHH
T ss_pred EEEEcChHHHHHHHHHhC--C-------------CCEEEEecCCCCccHHHHHHHHHcCcEEEEe--------CCHHHHH
Confidence 789999999999888765 1 2678888884 455555778889988877 2789999
Q ss_pred HhhhhCCeE-EEEeeCCCCcc-cccCHHHHHHHHHHhhcccCCCceEEEecccccccc-cccCCcccccccCCCceEEEE
Q 011057 197 EMVDENTIC-VAAILGSTLNG-EFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIA-PFLYPELEWDFRLPLVKSINV 273 (494)
Q Consensus 197 ~~i~~~t~~-vv~~~~~~~tG-~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~-~~~~~~~~~~~~~~~~D~~~~ 273 (494)
++ ++++++ |++++++||+| ...++++|.++|+++ |+++++|++|+.+.. +.... .... .++|+++.
T Consensus 136 ~~-~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~------~~~li~De~~~~~~~~~~~~~-~~~~---~~~di~~~ 204 (374)
T 2aeu_A 136 NK-IDKDTLVIITGSTMDLKVIELENFKKVINTAKNK------EAIVFVDDASGARVRLLFNQP-PALK---LGADLVVT 204 (374)
T ss_dssp TT-CCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHH------TCCEEEECTTHHHHHHHTTCC-CHHH---HTCSEEEE
T ss_pred hc-CCCccEEEEEccCCCCCCCCcccHHHHHHHHHHc------CCEEEEECCcccccccccccC-Cccc---cCCcEEEe
Confidence 88 778899 88999999999 899999999999999 999999999987531 11110 0111 15789999
Q ss_pred cCcccCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHH---
Q 011057 274 SGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHEN--- 350 (494)
Q Consensus 274 ~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~--- 350 (494)
++||++.+ +++|+++.+++ .+ +.+.....+.+ .+.+.....++.++++.+..+.+++..++....
T Consensus 205 S~sK~l~g-~~~G~~~~~~~-~~-~~l~~~~~~~~---------~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~ 272 (374)
T 2aeu_A 205 STDKLMEG-PRGGLLAGKKE-LV-DKIYIEGTKFG---------LEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLS 272 (374)
T ss_dssp ETTSSSSS-CSCEEEEEEHH-HH-HHHHHHHHTTT---------CBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCH
T ss_pred cCcccccC-cceEEEEECHH-HH-HHHHHhhcccc---------CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999755 58899887642 22 22111111110 122233444455556555432333333333333
Q ss_pred -HHHHHHHHhhC---CCeEEeecCCCccEEEEEecCCCCCC---HHHHHH-HHHhcCceeeccccCCCCCCceEEEEEec
Q 011057 351 -AMVLKEGLEKT---GRFNIVSKDEGVPLVAFSLKDNKRHD---EFEVAE-LLRRFGWIVPAYTMPADAQHITVLRVVIR 422 (494)
Q Consensus 351 -a~~l~~~L~~~---~~~~~~~~~~~~~~v~f~~~~~~~~~---~~~l~~-~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~ 422 (494)
.+.|.+.|..+ .++.+...+ . +++.+........+ ..+++. .|.++|+.+...... ..+..++|++++
T Consensus 273 ~~~~l~~~L~~~~~~~g~~~~~~~-~-g~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~--~~~~~~lRi~~~ 348 (374)
T 2aeu_A 273 KIEKLNKELKAIDDNINIVYERTP-T-GFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGM--PGASKSLRIDLT 348 (374)
T ss_dssp HHHHHHHHHTTTCTTEEEEEEECS-S-EEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSS--CSSCCSEEEETT
T ss_pred HHHHHHHhhhhhhhccCcceeeCC-c-eEEEEeecccccccccchHHHHHHHHHhCCEEEecCCCC--CCCCCeEEEEcC
Confidence 35556655554 235554443 2 33333321110000 112554 455789987543221 123457999987
Q ss_pred c-CCChHHHHHHHHHHHHHHHHHhc
Q 011057 423 E-DFSRTLAERLVLDITKVLHELDS 446 (494)
Q Consensus 423 ~-~~t~~~id~~i~~l~~~~~~l~~ 446 (494)
. ...+.+++++.+.|+++++++.+
T Consensus 349 ~~~~~~~~l~~l~~~l~~~l~~~~~ 373 (374)
T 2aeu_A 349 SRDAERIDDNYIIKAIVESIKMAFK 373 (374)
T ss_dssp SGGGGGSCHHHHHHHHHHHHHHHTC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhc
Confidence 4 33344588999999888877653
No 175
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.89 E-value=1e-21 Score=201.62 Aligned_cols=330 Identities=13% Similarity=0.058 Sum_probs=205.3
Q ss_pred hHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhc
Q 011057 69 EPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAE 148 (494)
Q Consensus 69 ~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~ 148 (494)
.+.+.+++. .....|...++..++ ++.+++++|.+. +++|+||++|+.+++.++..+
T Consensus 57 ~~~~~~a~~----~~~~~y~~~~~~~~l----~~~la~~~~~~~-------~~~~~~gt~a~~~al~~l~~~-------- 113 (456)
T 2ez2_A 57 SDKQWAGMM----MGDEAYAGSENFYHL----ERTVQELFGFKH-------IVPTHQGRGAENLLSQLAIKP-------- 113 (456)
T ss_dssp CHHHHHHHT----TCCCCSSSCHHHHHH----HHHHHHHHCCSE-------EEEESSHHHHHHHHHHHHCCT--------
T ss_pred CHHHHHHhh----cchhhcccChhHHHH----HHHHHHHhCCCc-------EEEeCCcHHHHHHHHHHhCCC--------
Confidence 455555443 222234444555554 455888888753 899999999999888777221
Q ss_pred CCCCCCCeEEeCCCcc-hHHHHHHHHcCCeeEEEeccCC---------ccccCHHHHHHhhhhCC----eEEEEeeCCC-
Q 011057 149 GKPFDKPNIVTGANVQ-VCWEKFARYFEVELKEVKLSEG---------YYVMDPVKAVEMVDENT----ICVAAILGST- 213 (494)
Q Consensus 149 g~~~~~~~vi~~~~~h-~s~~~~~~~~G~~v~~v~~~~~---------~~~~d~~~L~~~i~~~t----~~vv~~~~~~- 213 (494)
++ +++.++| .++..++...|++++.++++++ ++.+|+++|++++++++ ++|++++++|
T Consensus 114 -----gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ 186 (456)
T 2ez2_A 114 -----GQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNL 186 (456)
T ss_dssp -----TC--EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTT
T ss_pred -----CC--EeccccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCC
Confidence 13 6677787 8888889999999999988732 26799999999998776 7888888998
Q ss_pred CcccccC---HHHHHHHHHHhhcccCCCceEEEeccccccc--------ccccCCccc-c--cccCCCceEEEEcCcccC
Q 011057 214 LNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFI--------APFLYPELE-W--DFRLPLVKSINVSGHKYG 279 (494)
Q Consensus 214 ~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~--------~~~~~~~~~-~--~~~~~~~D~~~~~~hK~l 279 (494)
++|.+.+ +++|.++|+++ |+++|+|++|+.+. ..+...... . .+. ...|++++++||++
T Consensus 187 ptG~~~~~~~l~~i~~la~~~------~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~~S~kk~~ 259 (456)
T 2ez2_A 187 AGGQPVSMANMRAVRELTEAH------GIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMF-SYADGCTMSGKKDC 259 (456)
T ss_dssp TTSBCCCHHHHHHHHHHHHHT------TCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHH-TTCSEEEEETTTTT
T ss_pred CCCccCCHHHHHHHHHHHHHc------CCeEEEEccccccccccccccccccCCcchhhhhhhhc-ccCCEEEEeCcccC
Confidence 9999866 99999999999 99999999998631 111111000 0 011 23588888899997
Q ss_pred CcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHH-HHHHHHHhcHhHHHHHHHHHHHHHHHHHHHH
Q 011057 280 LVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIA-QYYQLIRLGFEGYRNVMENCHENAMVLKEGL 358 (494)
Q Consensus 280 ~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a-~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L 358 (494)
+.| ..|+++.+++............+.+.. . ..+.. ...+.+ ..+.++.+. ++..++..++.+++.+.|
T Consensus 260 ~~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~-~~~~~a~a~~~~~~~~----~~~~~~~~~~~~~l~~~L 329 (456)
T 2ez2_A 260 LVN-IGGFLCMNDDEMFSSAKELVVVYEGMP--S--YGGLA-GRDMEAMAIGLREAMQ----YEYIEHRVKQVRYLGDKL 329 (456)
T ss_dssp CCS-SCEEEEESCHHHHHHHHHHHHHHTCCT--T--TTTCC-HHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHH
T ss_pred CCC-ceeEEEECCHHHHHHHHHHHhhccCcc--c--ccCcc-hhHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHH
Confidence 755 467777644433211111111111100 0 00111 112222 111222221 355666777888999999
Q ss_pred hhCCCeEEeecCCCccEEEEEecC-CCCCCHHHH-----HHHH-HhcCceeec-cc-c-C-------CCCCCceEEEEEe
Q 011057 359 EKTGRFNIVSKDEGVPLVAFSLKD-NKRHDEFEV-----AELL-RRFGWIVPA-YT-M-P-------ADAQHITVLRVVI 421 (494)
Q Consensus 359 ~~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~l-----~~~L-~~~Gi~v~~-~~-~-~-------~~~~~~~~lRvs~ 421 (494)
++. ++++..+. ...++.+.+.. ..+.+..++ .++| .++|+.+.. .. . + ....+...+|+++
T Consensus 330 ~~~-g~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~ 407 (456)
T 2ez2_A 330 KAA-GVPIVEPV-GGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTI 407 (456)
T ss_dssp HHT-TCCBCSSC-CSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEEC
T ss_pred hcC-CCccccCC-CceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEe
Confidence 886 47765443 44556656421 012233344 7777 688987521 11 0 1 0012236799999
Q ss_pred ccC-CChHHHHHHHHHHHHHHHHHhcC
Q 011057 422 RED-FSRTLAERLVLDITKVLHELDSL 447 (494)
Q Consensus 422 ~~~-~t~~~id~~i~~l~~~~~~l~~~ 447 (494)
... ++.++++++++.|+++++...+.
T Consensus 408 ~~~~~t~e~i~~~~~~l~~~l~~~~~~ 434 (456)
T 2ez2_A 408 PRRVYTYAHMDVVADGIIKLYQHKEDI 434 (456)
T ss_dssp CTTTCCHHHHHHHHHHHHHHHHTGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhhhhc
Confidence 865 79999999999999988765544
No 176
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.89 E-value=1.9e-22 Score=204.27 Aligned_cols=342 Identities=12% Similarity=0.028 Sum_probs=216.3
Q ss_pred CCCCCccccccc------CCChHHHHHHHHH-Hhccc-CCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceee--e
Q 011057 54 GNPRLNLASFVT------TWMEPECDKLMMA-AINKN-YVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVG--T 123 (494)
Q Consensus 54 ~~~~~~~~~~~~------~~~~p~~~~~~~~-~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~--t 123 (494)
+...++|+.+.+ +++++.+.+++.+ .+... ...|...++..++++.+.+++....|.+.+ ...+++ |
T Consensus 28 ~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~---~~~i~~~~t 104 (412)
T 1yaa_A 28 RATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQ---EDRVISVQS 104 (412)
T ss_dssp CSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH---TTCEEEEEE
T ss_pred CCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCC---cceEEEEec
Confidence 334455555443 1345788899888 77632 223444556777777766666544442110 024888 9
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEec-cCCccccCHHHHHHhhhhC
Q 011057 124 VGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKL-SEGYYVMDPVKAVEMVDEN 202 (494)
Q Consensus 124 ~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~-~~~~~~~d~~~L~~~i~~~ 202 (494)
+||++|+.+++..+..- . .+++|+++.++|..+...++..|++++.+++ +++++.+|+++|++++.+.
T Consensus 105 ~g~~~a~~~~~~~~~~~--------~---~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 173 (412)
T 1yaa_A 105 LSGTGALHISAKFFSKF--------F---PDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKA 173 (412)
T ss_dssp EHHHHHHHHHHHHHHHH--------C---TTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHS
T ss_pred cchHhHHHHHHHHHHHh--------C---CCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhC
Confidence 99999999775433211 0 1257999999999999999999999999998 5434789999999999764
Q ss_pred ---CeEEEEeeCCCCcccccC---HHHHHHHHHHhhcccCCCceEEEeccccccccccc-CCcccc-ccc-CCC---ceE
Q 011057 203 ---TICVAAILGSTLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFL-YPELEW-DFR-LPL---VKS 270 (494)
Q Consensus 203 ---t~~vv~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~-~~~~~~-~~~-~~~---~D~ 270 (494)
+.++++++++||||.+.+ +++|+++|+++ |+++++|++|+.+...-. .+.... ++. ... -++
T Consensus 174 ~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 247 (412)
T 1yaa_A 174 PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASK------NHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVF 247 (412)
T ss_dssp CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEE
T ss_pred CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC------CCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceE
Confidence 445555999999999954 66789999999 999999999976532100 000000 111 111 356
Q ss_pred EEEcCcccCCc-CCceEEEE--E----eCCCC---cccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhc----
Q 011057 271 INVSGHKYGLV-YAGIGWVI--W----RNKED---LPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG---- 336 (494)
Q Consensus 271 ~~~~~hK~l~~-p~g~G~~~--~----~~~~~---~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~---- 336 (494)
+..+++|.++. +.++|+++ . +++.. +...+....... . .+.+.....++..+++...
T Consensus 248 ~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--------~-~~~~~~~~~a~~~~l~~~~~~~~ 318 (412)
T 1yaa_A 248 VCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSE--------V-SNPPAYGAKIVAKLLETPELTEQ 318 (412)
T ss_dssp EEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTT--------T-SSCCHHHHHHHHHHHHSHHHHHH
T ss_pred EEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhc--------c-CCCChHHHHHHHHHhCCHHHHHH
Confidence 67788998754 45579887 4 13220 111111100000 0 1111222223333333221
Q ss_pred -HhHHHHHHHHHHHHHHHHHHHHhhCC---CeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCC
Q 011057 337 -FEGYRNVMENCHENAMVLKEGLEKTG---RFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQ 412 (494)
Q Consensus 337 -~~g~~~~~~~~~~~a~~l~~~L~~~~---~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~ 412 (494)
.+.+++..++..++++++.+.|++++ ++++..+ ..+++.|. +++...+.+.|.++|+.+..
T Consensus 319 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~l~~~gi~v~~-------- 383 (412)
T 1yaa_A 319 WHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVN--QCGMFSFT-----GLTPQMVKRLEETHAVYLVA-------- 383 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHH--CCSSEEEC-----CCCHHHHHHHHHHHCEECCT--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeecc--CceEEEee-----CCCHHHHHHHHHhCCEEecc--------
Confidence 23567788888899999999999876 4665544 34454442 13455675566688998643
Q ss_pred CceEEEEEeccCCChHHHHHHHHHHHHHHHH
Q 011057 413 HITVLRVVIREDFSRTLAERLVLDITKVLHE 443 (494)
Q Consensus 413 ~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~ 443 (494)
.+|++++. +++++++++++.|+++++.
T Consensus 384 ---~~Ris~~~-~~~~~i~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 384 ---SGRASIAG-LNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp ---TSEEEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred ---CcEEEEcc-CCHhHHHHHHHHHHHHHHh
Confidence 27999874 5889999999999988764
No 177
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.89 E-value=4.1e-21 Score=192.81 Aligned_cols=284 Identities=17% Similarity=0.068 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHH----HHH
Q 011057 97 QNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEK----FAR 172 (494)
Q Consensus 97 e~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~----~~~ 172 (494)
..++++.+++++|.+. .+++++|++|+.+++.++.. .+++|+++.+.|.+... .++
T Consensus 54 ~~~l~~~la~~~~~~~-------~i~~~sGt~a~~~~~~~~~~-------------~g~~vl~~~~~~~~~~~~~~~~~~ 113 (386)
T 1cs1_A 54 RDVVQRALAELEGGAG-------AVLTNTGMSAIHLVTTVFLK-------------PGDLLVAPHDCYGGSYRLFDSLAK 113 (386)
T ss_dssp HHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHCC-------------TTCEEEEETTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHHhC-------------CCCEEEEecCCcHhHHHHHHHHHH
Confidence 3456677999998862 45556669999988887622 12579999999986444 346
Q ss_pred HcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEEEecccccccc
Q 011057 173 YFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIA 252 (494)
Q Consensus 173 ~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~ 252 (494)
..|++++.++.+ |+++|++++++++++|++++++|++|.+.|+++|.++|+++ |+++++|++|+.+..
T Consensus 114 ~~g~~~~~~~~~------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~------~~~li~De~~~~~~~ 181 (386)
T 1cs1_A 114 RGCYRVLFVDQG------DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREV------GAVSVVDNTFLSPAL 181 (386)
T ss_dssp TTSCEEEEECTT------CHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHT------TCEEEEECTTTCTTT
T ss_pred hcCCEEEEeCCC------CHHHHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHHHc------CCEEEEECCCccccc
Confidence 678888888742 78999999998999999999999999999999999999999 999999999988653
Q ss_pred cccCCcccccccCCCceEEEEcCcccCCcCCce--EEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHH
Q 011057 253 PFLYPELEWDFRLPLVKSINVSGHKYGLVYAGI--GWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYY 330 (494)
Q Consensus 253 ~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~--G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~ 330 (494)
. .+ .. .++|++..++||++.+|.+. |+++++++............+ .++. ..+++++
T Consensus 182 ~--~~---~~---~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~----------~~~~---~~~~~~~ 240 (386)
T 1cs1_A 182 Q--NP---LA---LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNI----------GVTG---GAFDSYL 240 (386)
T ss_dssp C--CG---GG---GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHH----------TCBC---CHHHHHH
T ss_pred C--Cc---cc---cCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhc----------CCCC---CHHHHHH
Confidence 1 11 11 26899999999998877663 888876532221111111000 0111 1222333
Q ss_pred HHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEe-ecC---------------CCccEEEEEecCCCCCCHHHHHHH
Q 011057 331 QLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIV-SKD---------------EGVPLVAFSLKDNKRHDEFEVAEL 394 (494)
Q Consensus 331 al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~-~~~---------------~~~~~v~f~~~~~~~~~~~~l~~~ 394 (494)
++..+ +.+..+.++..++++++.+.|++++.+.-. .+. ...++++|.+.+ ...++.+.
T Consensus 241 ~~~~l--~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 314 (386)
T 1cs1_A 241 LLRGL--RTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG----DEQTLRRF 314 (386)
T ss_dssp HHHHH--TTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS----CHHHHHHH
T ss_pred HHhcc--cHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECC----CHHHHHHH
Confidence 33333 234556677788888999999888765433 111 136788998853 25678889
Q ss_pred HHhcCceeecccc---------CCC--------------CCCceEEEEEeccCCChHHHHHHHHHHHH
Q 011057 395 LRRFGWIVPAYTM---------PAD--------------AQHITVLRVVIREDFSRTLAERLVLDITK 439 (494)
Q Consensus 395 L~~~Gi~v~~~~~---------~~~--------------~~~~~~lRvs~~~~~t~~~id~~i~~l~~ 439 (494)
|.++|+.++.... |.. .....++|++++...+.++++++.+.|++
T Consensus 315 l~~~gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~ 382 (386)
T 1cs1_A 315 LGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRA 382 (386)
T ss_dssp HHTCSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHhCCcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHH
Confidence 9999998763111 100 01136899999876666665555544443
No 178
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.89 E-value=4.5e-21 Score=195.30 Aligned_cols=332 Identities=11% Similarity=-0.001 Sum_probs=206.9
Q ss_pred ChHHHHHHHHHHhcccCCC-CCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHH
Q 011057 68 MEPECDKLMMAAINKNYVD-MDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRK 146 (494)
Q Consensus 68 ~~p~~~~~~~~~~~~~~~~-~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~ 146 (494)
.+|.+.+++.+.+...... +..++ .....++++.++++++.+. ..+++|+||++|+.+++.+++... ..
T Consensus 60 ~~p~v~~a~~~~~~~~~~~~~~~~~--~~~~~~l~~~la~~~~~~~-----~~v~~~~ggtea~~~ai~~~~~~~-~~-- 129 (429)
T 1s0a_A 60 NHPQLNAAMKSQIDAMSHVMFGGIT--HAPAIELCRKLVAMTPQPL-----ECVFLADSGSVAVEVAMKMALQYW-QA-- 129 (429)
T ss_dssp SCHHHHHHHHHHHHHCSCCCCSSEE--CHHHHHHHHHHHHHSCTTC-----CEEEEESSHHHHHHHHHHHHHHHH-HH--
T ss_pred CCHHHHHHHHHHHHhcccccccccC--CHHHHHHHHHHHHhCCCCC-----CEEEEeCCHHHHHHHHHHHHHHHh-cc--
Confidence 4688999998888653321 11222 2334557778999998654 359999999999999988765321 10
Q ss_pred hcCCCCCCCeEEeCCC-cchHHHHHHHHcC-------------CeeEEEeccC-----CccccCHHHHHHhhhh---CCe
Q 011057 147 AEGKPFDKPNIVTGAN-VQVCWEKFARYFE-------------VELKEVKLSE-----GYYVMDPVKAVEMVDE---NTI 204 (494)
Q Consensus 147 ~~g~~~~~~~vi~~~~-~h~s~~~~~~~~G-------------~~v~~v~~~~-----~~~~~d~~~L~~~i~~---~t~ 204 (494)
.|. .+++|+++++ .|.+...++...| .+++.++++. +...+|+++|++++++ +++
T Consensus 130 -~g~--~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~ 206 (429)
T 1s0a_A 130 -KGE--ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIA 206 (429)
T ss_dssp -HTC--CCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEE
T ss_pred -cCC--CCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEE
Confidence 010 1256777665 5554433333222 1456666642 1125899999999974 444
Q ss_pred EEEEeeC-CCCcccccC----HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccC
Q 011057 205 CVAAILG-STLNGEFED----VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYG 279 (494)
Q Consensus 205 ~vv~~~~-~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l 279 (494)
+|++... ++++|.+.| +++|.++|+++ |+++|+|++|+++.. .......+......|.++++ |++
T Consensus 207 ~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~------~~~li~De~~~~~g~--~g~~~~~~~~~~~~d~~t~s--K~l 276 (429)
T 1s0a_A 207 AVIIEPIVQGAGGMRMYHPEWLKRIRKICDRE------GILLIADEIATGFGR--TGKLFACEHAEIAPDILCLG--KAL 276 (429)
T ss_dssp EEEECSSEECTTTCEEBCTHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGGTCCCSEEEEC--GGG
T ss_pred EEEEeecccCCCCcccCCHHHHHHHHHHHHHc------CCEEEEeehhhCCcc--cchHHHhhhcCCCCCEEEec--ccc
Confidence 5544433 578998777 99999999999 999999999986421 11111111111246777654 877
Q ss_pred CcC-CceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHH
Q 011057 280 LVY-AGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGL 358 (494)
Q Consensus 280 ~~p-~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L 358 (494)
.++ .++|+++++++ .+ +.+.... ........+ .+.+.....++.++++.+..+ +..++..++++++.++|
T Consensus 277 ~~G~~~iG~~~~~~~-~~-~~l~~~~--~~~~~~~~t--~~~n~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~L 347 (429)
T 1s0a_A 277 TGGTMTLSATLTTRE-VA-ETISNGE--AGCFMHGPT--FMGNPLACAAANASLAILESG---DWQQQVADIEVQLREQL 347 (429)
T ss_dssp GTSSSCCEEEEECHH-HH-HHHHTST--TSSCSCCCT--TTTCHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHH
T ss_pred cCCCccceEEEeCHH-HH-HHhhcCC--CcccccCCC--CCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHH
Confidence 767 78999987542 22 2221100 000000011 222334445555666655333 35677778899999999
Q ss_pred hhC---CCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHH
Q 011057 359 EKT---GRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVL 435 (494)
Q Consensus 359 ~~~---~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~ 435 (494)
+++ +++..+.. ..+++.+.+.. ..+..++.+.|.++|+.+... ..++|++++..+++++++++++
T Consensus 348 ~~l~~~~~~~~~~~--~g~~~~~~~~~--~~~~~~l~~~l~~~Gi~v~~~--------~~~iRis~~~~~t~e~i~~~~~ 415 (429)
T 1s0a_A 348 APARDAEMVADVRV--LGAIGVVETTH--PVNMAALQKFFVEQGVWIRPF--------GKLIYLMPPYIILPQQLQRLTA 415 (429)
T ss_dssp GGGGGCTTEEEEEE--ETTEEEEEESS--CBCHHHHHHHHHHTTEECCCB--------TTEEEECCCTTCCHHHHHHHHH
T ss_pred HHHhcCCCEEEEEE--eeEEEEEEECC--cccHHHHHHHHHHCCCEEecc--------CCEEEEECCCCCCHHHHHHHHH
Confidence 876 44543332 24577788743 356788999999999986431 2479999888889999999999
Q ss_pred HHHHHHHH
Q 011057 436 DITKVLHE 443 (494)
Q Consensus 436 ~l~~~~~~ 443 (494)
.|++++++
T Consensus 416 ~l~~~~~~ 423 (429)
T 1s0a_A 416 AVNRAVQD 423 (429)
T ss_dssp HHHHHTSS
T ss_pred HHHHHHHh
Confidence 99887644
No 179
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.89 E-value=5.9e-22 Score=200.82 Aligned_cols=294 Identities=18% Similarity=0.105 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHH----HHH
Q 011057 97 QNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEK----FAR 172 (494)
Q Consensus 97 e~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~----~~~ 172 (494)
.+++++++++++|.+. .+++++|++|+.+++.++... +++|+++.+.|.+... .+.
T Consensus 84 ~~~le~~lA~l~g~~~-------~v~~~sG~~Ai~~al~al~~~-------------Gd~Vi~~~~~y~~~~~~~~~~~~ 143 (430)
T 3ri6_A 84 VEDLEQRLKNLTGALG-------VLALGSGMAAISTAILTLARA-------------GDSVVTTDRLFGHTLSLFQKTLP 143 (430)
T ss_dssp HHHHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHCCT-------------TCEEEEETTCCHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCc-------EEEECCHHHHHHHHHHHHhCC-------------CCEEEEcCCCchhHHHHHHHHHH
Confidence 3456667999999864 677888899999888776321 2689999999987766 667
Q ss_pred HcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEEEecccccccc
Q 011057 173 YFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIA 252 (494)
Q Consensus 173 ~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~ 252 (494)
..|++++.++.+ |+++|+++++++|++|++.+++||+|.+.|+++|+++|+++ |+++++|++|+.+..
T Consensus 144 ~~G~~~~~v~~~------d~~~l~~ai~~~t~~v~~e~p~NptG~~~dl~~i~~la~~~------g~~livD~a~~~~~~ 211 (430)
T 3ri6_A 144 SFGIEVRFVDVM------DSLAVEHACDETTKLLFLETISNPQLQVADLEALSKVVHAK------GIPLVVDTTMTPPYL 211 (430)
T ss_dssp HTTCEEEEECTT------CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTT------TCCEEEECTTSCTTT
T ss_pred HcCCEEEEeCCC------CHHHHHHhhCCCCeEEEEECCCCCCCeecCHHHHHHHHHHc------CCEEEEECCCccccc
Confidence 889999998853 88999999999999999999999999999999999999999 999999999986542
Q ss_pred cccCCcccccccCCCceEEEEcCcccCCcCC-ce-EEEEEeCCCCccc--ccccc------cCCCCC-C-CCCcccccCc
Q 011057 253 PFLYPELEWDFRLPLVKSINVSGHKYGLVYA-GI-GWVIWRNKEDLPE--ELIFH------INYLGA-D-QPTFTLNFSK 320 (494)
Q Consensus 253 ~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~-g~-G~~~~~~~~~~~~--~~~~~------~~y~~~-~-~~~~~~~~s~ 320 (494)
..+ . ..++|+++.+++|++.++. +. |+++.+....... .+... ..+... . .....+ +..
T Consensus 212 --~~~-~-----~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~-g~~ 282 (430)
T 3ri6_A 212 --LEA-K-----RLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNL-GPS 282 (430)
T ss_dssp --CCG-G-----GGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHH-CCC
T ss_pred --CCh-H-----HcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhc-CCC
Confidence 111 1 1268999999999997652 23 4444433322200 00000 000000 0 000000 111
Q ss_pred chHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCC--C-------------cc-EEEEEecCCC
Q 011057 321 GSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDE--G-------------VP-LVAFSLKDNK 384 (494)
Q Consensus 321 ~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~--~-------------~~-~v~f~~~~~~ 384 (494)
......|.+++ +.+.+..++++..+++.++.+.|++.|+++.+..|. . .+ +++|.+++
T Consensus 283 --~~~~~a~l~l~--~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~-- 356 (430)
T 3ri6_A 283 --LSPHNAYLQSL--GLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELES-- 356 (430)
T ss_dssp --CCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS--
T ss_pred --CCHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECC--
Confidence 11222333332 445567788888999999999999998887544331 1 44 89999852
Q ss_pred CCCHHHHHHHHHhcCceeecc------ccC---------C-----CCCCceEEEEEeccCCChHHHHHHHHHHHHHH
Q 011057 385 RHDEFEVAELLRRFGWIVPAY------TMP---------A-----DAQHITVLRVVIREDFSRTLAERLVLDITKVL 441 (494)
Q Consensus 385 ~~~~~~l~~~L~~~Gi~v~~~------~~~---------~-----~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~ 441 (494)
..+...+.+.|.-.++.++.. ..| . ......++|+|++. |+++.++++|++++
T Consensus 357 ~~~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~----E~~~dl~~dl~~al 429 (430)
T 3ri6_A 357 KEASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGI----EEIEDLKEDILQAL 429 (430)
T ss_dssp HHHHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHhh
Confidence 223445566555443322110 001 0 01134689999974 77888889998876
No 180
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.89 E-value=4.8e-22 Score=200.95 Aligned_cols=288 Identities=15% Similarity=0.058 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHH---
Q 011057 95 ELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFA--- 171 (494)
Q Consensus 95 ~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~--- 171 (494)
...+++++++++++|.+. ++++++|++|+.+++.++.. .+++|+++.+.|..+...+
T Consensus 81 p~~~~l~~~la~~~g~~~-------~~~~~sG~~Ai~~al~~l~~-------------~Gd~Vi~~~~~y~~~~~~~~~~ 140 (414)
T 3ndn_A 81 PTVSVFEERLRLIEGAPA-------AFATASGMAAVFTSLGALLG-------------AGDRLVAARSLFGSCFVVCSEI 140 (414)
T ss_dssp HHHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHTTCC-------------TTCEEEEESCCCHHHHHHHHTH
T ss_pred hHHHHHHHHHHHHHCCCc-------EEEECCHHHHHHHHHHHHhC-------------CCCEEEEcCCccchHHHHHHHH
Confidence 345567788999999853 78999999999887776622 1268999999998876665
Q ss_pred -HHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEEEecccccc
Q 011057 172 -RYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGF 250 (494)
Q Consensus 172 -~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~ 250 (494)
...|++++.++.+ |+++|+++++++|++|+++.++||+|.+.|+++|+++|+++ |+++++|++|+.+
T Consensus 141 ~~~~g~~~~~v~~~------d~~~l~~ai~~~t~~v~le~p~NptG~~~~l~~i~~la~~~------g~~livDe~~~~~ 208 (414)
T 3ndn_A 141 LPRWGVQTVFVDGD------DLSQWERALSVPTQAVFFETPSNPMQSLVDIAAVTELAHAA------GAKVVLDNVFATP 208 (414)
T ss_dssp HHHTTCEEEEECTT------CHHHHHHHTSSCCSEEEEESSCTTTCCCCCHHHHHHHHHHT------TCEEEEECTTTHH
T ss_pred HHHcCcEEEEeCCC------CHHHHHHhcCCCCeEEEEECCCCCCCccccHHHHHHHHHHc------CCEEEEECCCccc
Confidence 4489999988853 78999999999999999999999999999999999999999 9999999999865
Q ss_pred cccccCCcccccccCCCceEEEEcCcccCCcCC--ceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHH
Q 011057 251 IAPFLYPELEWDFRLPLVKSINVSGHKYGLVYA--GIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQ 328 (494)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~--g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~ 328 (494)
.. ..+. . .++|+++.+++|++.++. .+|+++.++. .+...+.......+. + ......
T Consensus 209 ~~--~~~~---~---~g~div~~S~sK~l~~~G~~~~G~vv~~~~-~~~~~l~~~~~~~g~---------~---~~~~~a 267 (414)
T 3ndn_A 209 LL--QQGF---P---LGVDVVVYSGTKHIDGQGRVLGGAILGDRE-YIDGPVQKLMRHTGP---------A---MSAFNA 267 (414)
T ss_dssp HH--CCCG---G---GTCSEEEEETTTTTTCSSCCCCEEEEECHH-HHTTHHHHHHHHHCC---------C---CCHHHH
T ss_pred cc--CCch---h---cCCCeEeccCCccccCCCCceEEEEEECHH-HHHHHHHHHHHHcCC---------C---CCHHHH
Confidence 32 1111 1 268999999999986543 2677776543 221111110011111 1 112234
Q ss_pred HHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCC----------------CccEEEEEecCCC---CCCHH
Q 011057 329 YYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDE----------------GVPLVAFSLKDNK---RHDEF 389 (494)
Q Consensus 329 ~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~----------------~~~~v~f~~~~~~---~~~~~ 389 (494)
|.+++. .+.+..+.++..+++.++.+.|++.+++..+..+. ..++++|.+++.. ..+..
T Consensus 268 ~~~~~~--l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~ 345 (414)
T 3ndn_A 268 WVLLKG--LETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAF 345 (414)
T ss_dssp HHHHHH--GGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHH
Confidence 444433 34456778888899999999999998776443221 2468899985410 12345
Q ss_pred HHHHHHHhcCceeeccc------cCCC--------------CCCceEEEEEeccCCChHHHHHHHHHHHHHH
Q 011057 390 EVAELLRRFGWIVPAYT------MPAD--------------AQHITVLRVVIREDFSRTLAERLVLDITKVL 441 (494)
Q Consensus 390 ~l~~~L~~~Gi~v~~~~------~~~~--------------~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~ 441 (494)
.+.+.|...++.++... .|.. .....++|+|++. |+++.++++|++++
T Consensus 346 ~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~----e~~~dli~dl~~al 413 (414)
T 3ndn_A 346 EVLDKMRLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL----EDTDDLIADIDRAL 413 (414)
T ss_dssp HHHHHCSSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred HHHHhCccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence 67777765554432110 0100 1124689999974 67888888888876
No 181
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.89 E-value=6.3e-22 Score=194.39 Aligned_cols=282 Identities=17% Similarity=0.090 Sum_probs=188.3
Q ss_pred HHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHH----HHc
Q 011057 99 RCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFA----RYF 174 (494)
Q Consensus 99 ~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~----~~~ 174 (494)
++++.+++++|.+. .+++++|++|+.+++.++.. .+++|+++.++|.++...+ +..
T Consensus 2 ~l~~~la~~~g~~~-------~i~~~sG~~a~~~~~~~~~~-------------~g~~v~~~~~~~~~~~~~~~~~~~~~ 61 (331)
T 1pff_A 2 ALEGKIAKLEHAEA-------CAATASGMGAIAASVWTFLK-------------AGDHLISDDCLYGCTHALFEHQLRKF 61 (331)
T ss_dssp HHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHCC-------------TTCEEEEESCCCHHHHHHHHTHHHHT
T ss_pred hHHHHHHHHhCCCe-------EEEeCChHHHHHHHHHHhcC-------------CCCEEEEcCCCcchHHHHHHHHHHhc
Confidence 46677999999863 56677779999988877622 1258999999998876654 457
Q ss_pred CCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHHHHH-hhcccCCCceEEEeccccccccc
Q 011057 175 EVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAE-KNKETGWDTPIHVDAASGGFIAP 253 (494)
Q Consensus 175 G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~la~~-~~~~~~~~~~l~vD~a~~~~~~~ 253 (494)
|++++.++. .|+++|++++++++++|++++++|+||.+.|+++|.++|++ + ++++++|++|+.+...
T Consensus 62 g~~~~~~~~------~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~------~~~li~D~a~~~~~~~ 129 (331)
T 1pff_A 62 GVEVDFIDM------AVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQK------DILVIVDNTFASPILT 129 (331)
T ss_dssp TCEEEEECT------TSTTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSS------SCEEEEECTTTHHHHC
T ss_pred CCEEEEeCC------CCHHHHHHhhcCCCeEEEEECCCCCcCcccCHHHHHHHHhhhc------CCEEEEECCCcccccC
Confidence 999888874 47789999999889999999999999999999999999999 9 9999999999876431
Q ss_pred ccCCcccccccCCCceEEEEcCcccCCcCCc--eEEEEEeCCCCcccccccccCC-CCCCCCCcccccCcchHHHHHHHH
Q 011057 254 FLYPELEWDFRLPLVKSINVSGHKYGLVYAG--IGWVIWRNKEDLPEELIFHINY-LGADQPTFTLNFSKGSSQVIAQYY 330 (494)
Q Consensus 254 ~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~G~~~~~~~~~~~~~~~~~~~y-~~~~~~~~~~~~s~~~~~~~a~~~ 330 (494)
.+ .+ .++|+++.++||++++|.+ +|+++++++... +.+...... .+ ++.+. +.+++
T Consensus 130 --~~---~~---~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~-~~l~~~~~~~~~---------~~~~~---~~~~~ 188 (331)
T 1pff_A 130 --NP---LD---LGVDIVVHSATKYINGHTDVVAGLVCSRADIIA-KVKSQGIKDITG---------AIISP---HDAWL 188 (331)
T ss_dssp --CG---GG---GTCSEEEEETTTTTSSSSSCCCEEEEECHHHHH-HHHHTCCCCCCC---------CCCCH---HHHHH
T ss_pred --Ch---hh---cCCcEEEEECccccCCCCCceEEEEEeCcHHHH-HHHHHHHHhhcC---------CCCCH---HHHHH
Confidence 11 11 2689999999999887766 788887652222 111111111 10 11212 22333
Q ss_pred HHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCC--------------CeEEeecC--CCccEEEEEecCCCCCCHHHHHHH
Q 011057 331 QLIRLGFEGYRNVMENCHENAMVLKEGLEKTG--------------RFNIVSKD--EGVPLVAFSLKDNKRHDEFEVAEL 394 (494)
Q Consensus 331 al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~--------------~~~~~~~~--~~~~~v~f~~~~~~~~~~~~l~~~ 394 (494)
++..+. .+..+.++..++...+.+.|++.+ ++++..+. ...++++|.+. +..++.+.
T Consensus 189 ~~~~l~--~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 261 (331)
T 1pff_A 189 ITRGTL--TLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD-----GLEKAKKV 261 (331)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS-----SHHHHHHH
T ss_pred HHcCcc--hHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC-----CHHHHHHH
Confidence 222221 123334444555555555555432 23322211 13568888874 46688899
Q ss_pred HHhcCceeeccccCC-----------------------CCCCceEEEEEeccCCChHHHHHHHHHHHHH
Q 011057 395 LRRFGWIVPAYTMPA-----------------------DAQHITVLRVVIREDFSRTLAERLVLDITKV 440 (494)
Q Consensus 395 L~~~Gi~v~~~~~~~-----------------------~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~ 440 (494)
|.+.||+++.....+ ......++|++++..++.++++++++.|+++
T Consensus 262 l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 262 LDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp HHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred HHhCCCceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 999999764431100 0011468999999998888888888777653
No 182
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.89 E-value=1e-20 Score=192.69 Aligned_cols=343 Identities=13% Similarity=0.015 Sum_probs=195.5
Q ss_pred ChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 011057 68 MEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA 147 (494)
Q Consensus 68 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~ 147 (494)
.+|.+.+++.+.++.... +.......+...+++++++++++.+. ..+++|+||++|+..++.+++..+..+
T Consensus 46 ~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~la~~~~~~~-----~~v~~~~gg~ea~~~al~~~~~~~~~~--- 116 (430)
T 3i4j_A 46 GRAEVGERMAAQAARLPF-VHGSQFSSDVLEEYAGRLARFVGLPT-----FRFWAVSGGSEATESAVKLARQYHVER--- 116 (430)
T ss_dssp CCHHHHHHHHHHHHHCCC-CCTTTCEEHHHHHHHHHHHHHTTCTT-----CEEEEESSHHHHHHHHHHHHHHHHHHT---
T ss_pred CCHHHHHHHHHHHHhccc-ccccccCCHHHHHHHHHHHHhCCCCC-----CEEEEeCcHHHHHHHHHHHHHHHHHhc---
Confidence 378888888888765322 22223344566678899999998754 359999999999999999887643221
Q ss_pred cCCCCCCCeEEeCCCcchHHHHHHHHcCC---------------eeEEEeccCC--ccccCHHHHHHhhh----hCCeEE
Q 011057 148 EGKPFDKPNIVTGANVQVCWEKFARYFEV---------------ELKEVKLSEG--YYVMDPVKAVEMVD----ENTICV 206 (494)
Q Consensus 148 ~g~~~~~~~vi~~~~~h~s~~~~~~~~G~---------------~v~~v~~~~~--~~~~d~~~L~~~i~----~~t~~v 206 (494)
|. ..+++|++.++.|..+...+...+. ++..++.++. .+..|+++|+++++ +++++|
T Consensus 117 -g~-~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~v 194 (430)
T 3i4j_A 117 -GE-PGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAF 194 (430)
T ss_dssp -TC-TTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEE
T ss_pred -CC-CCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEE
Confidence 21 1235677666655433332222222 3344444321 02357789999887 334555
Q ss_pred EEeeCCC-CcccccC----HHHHHHHHHHhhcccCCCceEEEecccccccccccCCccccccc-CCCceEEEEcCcccCC
Q 011057 207 AAILGST-LNGEFED----VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFR-LPLVKSINVSGHKYGL 280 (494)
Q Consensus 207 v~~~~~~-~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~D~~~~~~hK~l~ 280 (494)
++...++ ++|.+.+ +++|.++|++| |+++|+|++|.++.. .......... ....|.++++ |.+.
T Consensus 195 i~~p~~~~~~G~~~~~~~~l~~l~~l~~~~------~~~li~DEv~~~~~~--~g~~~~~~~~~~~~~di~t~s--K~l~ 264 (430)
T 3i4j_A 195 MAEPVVGASDAALAPAPGYYERVRDICDEA------GIIFIADEVMSGMGR--CGSPLALSRWSGVTPDIAVLG--KGLA 264 (430)
T ss_dssp EECSSCCGGGTTCCCCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGTTTCCCSEEEEC--GGGT
T ss_pred EEcCcccCcCCcccCCHHHHHHHHHHHHHc------CCEEEEechhhCCCc--ccchhhhhhhcCCCCcEEEEc--cccc
Confidence 5555555 7788777 99999999999 999999999986521 1111111111 1135666654 8887
Q ss_pred cC-CceEEEEEeCCCCccccccccc-CCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHH
Q 011057 281 VY-AGIGWVIWRNKEDLPEELIFHI-NYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGL 358 (494)
Q Consensus 281 ~p-~g~G~~~~~~~~~~~~~~~~~~-~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L 358 (494)
++ .++|+++.+++ .. +.+.... .+... .+ .+.+.....+..++++.+..+ +..++..++.+++++.|
T Consensus 265 ~G~~r~G~~~~~~~-i~-~~~~~~~~~~~~~----~t--~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~~~~~l 333 (430)
T 3i4j_A 265 AGYAPLAGLLAAPQ-VY-ETVMGGSGAFMHG----FT--YAGHPVSVAAGLSVLDIVERE---DLTGAAKERGAQLLAGL 333 (430)
T ss_dssp TTSSCCEEEEECHH-HH-HHHHHTTCBCCCC----CT--TTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHH
T ss_pred CCccccEEEEECHH-HH-HHHhccCCccccc----CC--CCCCHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHH
Confidence 66 77899887432 22 2221110 01100 01 122223334444555544343 33444455555555555
Q ss_pred h----hCCCeEEeecCCCccEEEEEecCCC-------CCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCCh
Q 011057 359 E----KTGRFNIVSKDEGVPLVAFSLKDNK-------RHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSR 427 (494)
Q Consensus 359 ~----~~~~~~~~~~~~~~~~v~f~~~~~~-------~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~ 427 (494)
+ +++.+..+.. ..+++.+.+.+.. .....++.+.|.++|+++.....+....+..++|+++....++
T Consensus 334 ~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~ 411 (430)
T 3i4j_A 334 QALQARFPQMMQVRG--TGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITA 411 (430)
T ss_dssp HHHHHHCTTEEEEEE--ETTEEEEEEC------------CHHHHHHHHHHTTEECC-----------CEEEECCCTTCCH
T ss_pred HHHHHhCCCeEEEEE--EEEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEEEEECCCCCCH
Confidence 4 4555554433 3567777764211 1123679999999999886542222223456899998878899
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011057 428 TLAERLVLDITKVLHEL 444 (494)
Q Consensus 428 ~~id~~i~~l~~~~~~l 444 (494)
++++++++.|+++++++
T Consensus 412 e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 412 AEVDGLLALLAGALEDV 428 (430)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999988764
No 183
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.89 E-value=4.4e-21 Score=195.87 Aligned_cols=326 Identities=15% Similarity=0.045 Sum_probs=207.5
Q ss_pred ChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 011057 68 MEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA 147 (494)
Q Consensus 68 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~ 147 (494)
.+|.+.+++.+.++........+ ..+...+++++|++++|.+ .+++++||++|+..++.+++......
T Consensus 93 ~~p~v~~Ai~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~g~~-------~v~~~~sGseA~~~al~~~~~~~~~~--- 160 (439)
T 2oat_A 93 CHPKIVNALKSQVDKLTLTSRAF--YNNVLGEYEEYITKLFNYH-------KVLPMNTGVEAGETACKLARKWGYTV--- 160 (439)
T ss_dssp TCHHHHHHHHHHHTTCSCCCTTS--EESSHHHHHHHHHHHHTCS-------EEEEESSHHHHHHHHHHHHHHHHHHT---
T ss_pred CCHHHHHHHHHHHHhcCcccCcc--CCHHHHHHHHHHHHhcCCC-------EEEEeCCHHHHHHHHHHHHHHHhhhc---
Confidence 57889999988887643211112 2234455777788888854 38999999999999998876421110
Q ss_pred cCCCCCCCeEEeCC-CcchHHHHHHHHcC------------CeeEEEeccCCccccCHHHHHHhhh-hCCeEEEEeeCCC
Q 011057 148 EGKPFDKPNIVTGA-NVQVCWEKFARYFE------------VELKEVKLSEGYYVMDPVKAVEMVD-ENTICVAAILGST 213 (494)
Q Consensus 148 ~g~~~~~~~vi~~~-~~h~s~~~~~~~~G------------~~v~~v~~~~~~~~~d~~~L~~~i~-~~t~~vv~~~~~~ 213 (494)
.|....+++|++.+ ..|.+...++...| .++..+|. .|+++|++++. +++++|++...++
T Consensus 161 ~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~------~d~~~le~~l~~~~~~~vi~ep~~~ 234 (439)
T 2oat_A 161 KGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY------NDLPALERALQDPNVAAFMVEPIQG 234 (439)
T ss_dssp TCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS------SCHHHHHHHTTSTTEEEEEECSSBT
T ss_pred cCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC------CCHHHHHHHhCCCCEEEEEEECCCC
Confidence 12111224666655 45666555555545 35555653 38999999994 5666666555555
Q ss_pred Cccccc----CHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcC-CceEEE
Q 011057 214 LNGEFE----DVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVY-AGIGWV 288 (494)
Q Consensus 214 ~tG~~~----~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~G~~ 288 (494)
++|.+. ++++|.++|++| |+++++|++|.++.. .......+..-...|.++ +.|++.++ ..+|++
T Consensus 235 ~~G~~~~~~~~l~~l~~l~~~~------gillI~DEv~~g~g~--~g~~~~~~~~~~~~Di~t--~sK~l~~G~~~~G~v 304 (439)
T 2oat_A 235 EAGVVVPDPGYLMGVRELCTRH------QVLFIADEIQTGLAR--TGRWLAVDYENVRPDIVL--LGKALSGGLYPVSAV 304 (439)
T ss_dssp TTTSBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSGGGGGTCCCSEEE--ECGGGGTTSSCCEEE
T ss_pred CCCCcCCCHHHHHHHHHHHHHc------CCEEEEeccccCCcc--CCcchhHHHhCCCCcEEE--ecccccCCCCCeEEE
Confidence 689775 799999999999 999999999965321 111111111111467764 45988765 568998
Q ss_pred EEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEee
Q 011057 289 IWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVS 368 (494)
Q Consensus 289 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~ 368 (494)
+++++ .. +.+. ......+ ++.+.....+..++++.+..+ +..++..++++++.+.|++++ +.++.
T Consensus 305 ~~~~~-~~-~~l~-------~~~~~~t--~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~-~~~~~ 369 (439)
T 2oat_A 305 LCDDD-IM-LTIK-------PGEHGST--YGGNPLGCRVAIAALEVLEEE---NLAENADKLGIILRNELMKLP-SDVVT 369 (439)
T ss_dssp EECHH-HH-TTSC-------TTSSCCS--STTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHTTSC-TTTEE
T ss_pred EECHH-HH-hccC-------CCCcccC--CCcCHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHhc-CCCcE
Confidence 87652 22 1111 0001111 222334445556666666443 456788889999999999874 33211
Q ss_pred c-CCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHH
Q 011057 369 K-DEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHE 443 (494)
Q Consensus 369 ~-~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~ 443 (494)
. +...+++.+.+....+.+..++.++|.++|+.+.. .+..++|+++...+++++++++++.|++++++
T Consensus 370 ~~~~~g~~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~~-------~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 370 AVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKP-------THGDIIRFAPPLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp EEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECCB-------SSSSEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEeeeeEEEEEEecCccHHHHHHHHHHHHCCeEEec-------CCCCEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence 1 11346777887532114577899999999998643 13467999988888999999999999888753
No 184
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.89 E-value=2.3e-21 Score=202.49 Aligned_cols=360 Identities=11% Similarity=0.040 Sum_probs=224.3
Q ss_pred ccccccCCChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhC--CCCCCCCCcceeeecChhHHHHHHHHHH
Q 011057 60 LASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFN--APLEDSETAVGVGTVGSSEAIMLAGLAF 137 (494)
Q Consensus 60 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g--~~~~~~~~~~~~~t~ggt~a~~~a~~a~ 137 (494)
++.+.+..++|.+.+.+.+.+... ..+....+..++++.+.+++++.++ .+.. +...+++|+|+++|+.+++.++
T Consensus 108 l~~g~~~~~~~~~v~a~~~~~~~~-~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~--~~~~i~~t~G~t~al~~~~~~l 184 (533)
T 3f6t_A 108 YCHTELGLNRDKVVAEWVNGAVAN-NYPVPDRCLVNTEKIINYFLQELSYKDANLA--EQTDLFPTEGGTAAIVYAFHSL 184 (533)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHTC-SCCSSSSCCHHHHHHHHHHHHHHHTTTCCCG--GGEEEEEEEHHHHHHHHHHHHH
T ss_pred ccCCCCCcCCcHHHHHHHHHHHhC-CCCCCcccHHHHHHHHHHHHHHhcCCCCCCC--CcceEEEECCHHHHHHHHHHHh
Confidence 343344444565554444444332 1223445778899998888877633 3321 0135899999999999888764
Q ss_pred HHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEecc---CCccccCHHHHHHhhhhCCeEEEEeeCCCC
Q 011057 138 KRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLS---EGYYVMDPVKAVEMVDENTICVAAILGSTL 214 (494)
Q Consensus 138 ~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~---~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~ 214 (494)
.... .-..+++|+++.++|.++...++..|++++.++++ ++++.+|+++|++++++++++|++++++||
T Consensus 185 ~~~~--------l~~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~k~v~l~~p~NP 256 (533)
T 3f6t_A 185 AENH--------LLKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNP 256 (533)
T ss_dssp HHTT--------SSCTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCTTEEEEEEESSCTT
T ss_pred hhhh--------ccCCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCCCCeEEEEeCCCCC
Confidence 2210 01113689999999999999999999999999885 334789999999999989999999999999
Q ss_pred cccccCHH---HHHHHHH-HhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCC-cCCceEEEE
Q 011057 215 NGEFEDVK---LLNDLLA-EKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGL-VYAGIGWVI 289 (494)
Q Consensus 215 tG~~~~l~---~I~~la~-~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~G~~~ 289 (494)
||.+.+.+ +|+++|+ ++ ++++++|++|+.+... ..... . ...+.+++..+++|.++ ++.++|+++
T Consensus 257 tG~~~~~~~l~~l~~la~~~~------~~~li~De~y~~~~~~--~~~~~-~-~~~~~~i~~~S~SK~~g~~G~RiG~l~ 326 (533)
T 3f6t_A 257 TSKEFDTNALNAIKQAVEKNP------KLMIISDEVYGAFVPN--FKSIY-S-VVPYNTMLVYSYSKLFGCTGWRLGVIA 326 (533)
T ss_dssp TCBCCCHHHHHHHHHHHHHCT------TCEEEEECTTGGGSTT--CCCHH-H-HSGGGEEEEEESHHHHTCGGGCEEEEE
T ss_pred CccccCHHHHHHHHHHHHhCC------CCEEEEcCCccccccC--ccCHh-h-cCCCCEEEEecCcccCCCcccceEEEE
Confidence 99997766 7788888 68 9999999999875421 11111 0 12245688889999874 566799999
Q ss_pred EeCCCCccccccccc---------CCC--C----------------CCCCCcccccCcchHHHHHHHHHHHHh-------
Q 011057 290 WRNKEDLPEELIFHI---------NYL--G----------------ADQPTFTLNFSKGSSQVIAQYYQLIRL------- 335 (494)
Q Consensus 290 ~~~~~~~~~~~~~~~---------~y~--~----------------~~~~~~~~~~s~~~~~~~a~~~al~~l------- 335 (494)
+++...+...+.... .|. . .........+............++..+
T Consensus 327 ~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~ 406 (533)
T 3f6t_A 327 LNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGG 406 (533)
T ss_dssp EESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGG
T ss_pred ECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhcccc
Confidence 877532211110000 000 0 000111111122112222111134444
Q ss_pred -cHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccEEEEEecCC----C----------CCCHHHHHHHHH-hcC
Q 011057 336 -GFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDN----K----------RHDEFEVAELLR-RFG 399 (494)
Q Consensus 336 -~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~----~----------~~~~~~l~~~L~-~~G 399 (494)
....+++..+++.+++++|.+.|. ++ +.+..+. ...++.+.+... . ..+..++..+|. ++|
T Consensus 407 ~~~~~~~~~~~~~~~r~~~l~~~L~-~~-~~~~~~~-~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~G 483 (533)
T 3f6t_A 407 SDDPYIDIARKLVSERYDQLHDAMQ-AP-KDETDTN-THYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNG 483 (533)
T ss_dssp TBCHHHHHHHHHHHHHHHHHHHHHT-CC-CCCSTTB-CCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcC-CC-ccccCCC-ceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCC
Confidence 224456777888889999999997 65 5543332 223333443210 0 124556666554 779
Q ss_pred ceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHHhc
Q 011057 400 WIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDS 446 (494)
Q Consensus 400 i~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~~ 446 (494)
+.+.....+.. +...+|+++. ..+.++++.+++.|+++++++.+
T Consensus 484 V~v~pg~~f~~--~~~~iRls~a-~~~~e~i~~~i~~L~~~l~~~~~ 527 (533)
T 3f6t_A 484 VVLVDGVGFGA--KPGELRVSQA-NLPTEDYALIGKQVLELLKEYYE 527 (533)
T ss_dssp SSSCTTEEECS--STTEEEEESS-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCcccCC--CCCEEEEEEe-eCCHHHHHHHHHHHHHHHHHHHH
Confidence 98754333322 2457999985 46788999999999988877653
No 185
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.89 E-value=1.1e-21 Score=198.15 Aligned_cols=287 Identities=16% Similarity=0.074 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHH----
Q 011057 96 LQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFA---- 171 (494)
Q Consensus 96 le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~---- 171 (494)
..+++++.+|+++|.+. .++++||++|+.+++.++.+ .+++|+++...|.+....+
T Consensus 83 ~~~~le~~lA~l~g~~~-------~i~~ssGt~Ai~~al~~l~~-------------~Gd~Vi~~~~~y~~~~~~~~~~l 142 (415)
T 2fq6_A 83 THFSLQQAMCELEGGAG-------CVLFPCGAAAVANSILAFIE-------------QGDHVLMTNTAYEPSQDFCSKIL 142 (415)
T ss_dssp HHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHTTCC-------------TTCEEEEETTSCHHHHHHHHHTG
T ss_pred hHHHHHHHHHHHhCCCe-------EEEeCCHHHHHHHHHHHHhC-------------CCCEEEEeCCCchHHHHHHHHHH
Confidence 33456677999999853 67789999999988776522 1368999999998766543
Q ss_pred HHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHHHHH--hhcccCCCceEEEeccccc
Q 011057 172 RYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAE--KNKETGWDTPIHVDAASGG 249 (494)
Q Consensus 172 ~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~la~~--~~~~~~~~~~l~vD~a~~~ 249 (494)
+..|++++.++.+ |+++|+++|+++|++|++.+++|++|.+.|+++|+++|++ + |+++++|++|+.
T Consensus 143 ~~~G~~v~~v~~~------d~~~le~ai~~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~------g~~livD~a~a~ 210 (415)
T 2fq6_A 143 SKLGVTTSWFDPL------IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVP------DAIIMIDNTWAA 210 (415)
T ss_dssp GGGTCEEEEECTT------CGGGGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCT------TCEEEEECTTTT
T ss_pred HHcCcEEEEECCC------CHHHHHHhhccCCcEEEEECCCCCCCEeecHHHHHHHHHhhcC------CCEEEEECCCcc
Confidence 4568998888742 7889999999999999999999999999999999999999 9 999999999986
Q ss_pred ccccccCCcccccccCCCceEEEEcCcccCCcCCc--eEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHH
Q 011057 250 FIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAG--IGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIA 327 (494)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a 327 (494)
+.. ..+ . . .++|+++.++||+++++.+ .|+++.++. .+ +.+.......+ +..+ ...
T Consensus 211 ~~~--~~p-~--~---~g~Div~~S~sK~lg~~g~~~~G~l~~~~~-~~-~~l~~~~~~~G---------~~~~---~~~ 268 (415)
T 2fq6_A 211 GVL--FKA-L--D---FGIDVSIQAATKYLVGHSDAMIGTAVCNAR-CW-EQLRENAYLMG---------QMVD---ADT 268 (415)
T ss_dssp TTS--SCG-G--G---GTCSEEEEETTTTTTCSSSCCCEEEEECTT-TH-HHHHHHHHHTT---------CCCC---HHH
T ss_pred ccc--CCc-c--c---cCCeEEEEeCccccCCCCCceEEEEEeCHH-HH-HHHHHHHHhcC---------CCCC---HHH
Confidence 431 111 1 1 2689999999999977654 577776543 32 22111101111 1111 112
Q ss_pred HHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEe-ecC---------------CCccEEEEEecCC-CCCCHHH
Q 011057 328 QYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIV-SKD---------------EGVPLVAFSLKDN-KRHDEFE 390 (494)
Q Consensus 328 ~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~-~~~---------------~~~~~v~f~~~~~-~~~~~~~ 390 (494)
.|..++. .+.+..+.++..+++.++.+.|++.+.++-+ .+. ...++++|.+++. ...+...
T Consensus 269 a~~~~~~--l~~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~ 346 (415)
T 2fq6_A 269 AYITSRG--LRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELAN 346 (415)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHH
T ss_pred HHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHH
Confidence 2333322 2345667777888899999999988765532 221 1357899998641 0112334
Q ss_pred HHHHHHhcCceeecc------cc--C---C-------CCCCceEEEEEeccCCChHHHHHHHHHHH
Q 011057 391 VAELLRRFGWIVPAY------TM--P---A-------DAQHITVLRVVIREDFSRTLAERLVLDIT 438 (494)
Q Consensus 391 l~~~L~~~Gi~v~~~------~~--~---~-------~~~~~~~lRvs~~~~~t~~~id~~i~~l~ 438 (494)
+.+.|.-.++.++.. .. | . .......+|+|++...++++++.|.++|+
T Consensus 347 ~l~~l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~ 412 (415)
T 2fq6_A 347 YLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFA 412 (415)
T ss_dssp HHTTCSSCEECSCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHH
T ss_pred HHHhCCcCeEeccCCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHH
Confidence 444443223332211 00 1 0 01124689999998777766665555554
No 186
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.89 E-value=7.8e-22 Score=198.50 Aligned_cols=338 Identities=11% Similarity=-0.025 Sum_probs=211.4
Q ss_pred CCCCccccccc------CCChHHHHHHHHHHhccc-CCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceee--ecC
Q 011057 55 NPRLNLASFVT------TWMEPECDKLMMAAINKN-YVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVG--TVG 125 (494)
Q Consensus 55 ~~~~~~~~~~~------~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~--t~g 125 (494)
...++|+.+.+ .++++.+.+++.+.+... ...|....+..++++.+.+++... +.++ ..+++ |+|
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~-~~~~-----~~v~~~~~~g 99 (394)
T 2ay1_A 26 QGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGD-GLKS-----ETTATLATVG 99 (394)
T ss_dssp TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGG-GCCG-----GGEEEEEEEH
T ss_pred ccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHHHhCC-CCCc-----ccEEEEecCC
Confidence 34455666542 244678888888776542 233444456667776655554221 2232 34777 999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccC-CccccCHHHHHHhhhhC--
Q 011057 126 SSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSE-GYYVMDPVKAVEMVDEN-- 202 (494)
Q Consensus 126 gt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~-- 202 (494)
|++|+.+++.++... . .+++|+++.++|..+...++..|++++.+++++ +++.+|+++|++++++.
T Consensus 100 ~~~a~~~~~~~~~~~-~----------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 168 (394)
T 2ay1_A 100 GTGALRQALELARMA-N----------PDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKK 168 (394)
T ss_dssp HHHHHHHHHHHHHHH-C----------TTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCT
T ss_pred chhHHHHHHHHHHhc-C----------CCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHHHHHHHhCCC
Confidence 999999888776431 0 125799999999999999999999999999852 34789999999999753
Q ss_pred -CeEEEEeeCCCCcccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccc-ccc-CCCceEEEEcCc
Q 011057 203 -TICVAAILGSTLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEW-DFR-LPLVKSINVSGH 276 (494)
Q Consensus 203 -t~~vv~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~-~~~~D~~~~~~h 276 (494)
++++++++++||||.+.+ +++|.++|+++ ++++++|++|+++...-..+.... .+. ...-+++..+++
T Consensus 169 ~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 242 (394)
T 2ay1_A 169 GDMVLLHGCCHNPTGANLTLDQWAEIASILEKT------GALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCS 242 (394)
T ss_dssp TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECT
T ss_pred CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC------CCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEecc
Confidence 567778999999999865 56789999999 999999999987542100000000 011 111235567889
Q ss_pred ccCC-cCCceEEEEE--eCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHh-----cHhHHHHHHHHHH
Q 011057 277 KYGL-VYAGIGWVIW--RNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRL-----GFEGYRNVMENCH 348 (494)
Q Consensus 277 K~l~-~p~g~G~~~~--~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l-----~~~g~~~~~~~~~ 348 (494)
|+++ ++.++|++++ .++..+............. +. ...+.....++.++++.. -.+.+++..++..
T Consensus 243 K~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~-----~~-~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~ 316 (394)
T 2ay1_A 243 KNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQ-----TY-SFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGML 316 (394)
T ss_dssp TTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHT-----TT-SSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhh-----hc-CCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 9886 5667899987 2322111100000000000 00 111122222233333221 0245677788888
Q ss_pred HHHHHHHHHHhhCC---CeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCC
Q 011057 349 ENAMVLKEGLEKTG---RFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDF 425 (494)
Q Consensus 349 ~~a~~l~~~L~~~~---~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~ 425 (494)
++++++.+.|++++ ++++..+. ...++.+.+ +...+.+.|.++|+.+.. + +|++++ .+
T Consensus 317 ~~~~~l~~~L~~~~~~~~~~~~~~~-~g~~~~~~~------~~~~~~~~l~~~gi~v~~--------~---~Ris~~-~~ 377 (394)
T 2ay1_A 317 RLREQLAGELRDLSGSDRFGFVAEH-RGMFSRLGA------TPEQVKRIKEEFGIYMVG--------D---SRINIA-GL 377 (394)
T ss_dssp HHHHHHHHHHHHHHTSSTTTHHHHC-CSSEEECCC------CHHHHHHHHHHHCEECCT--------T---CEEEGG-GC
T ss_pred HHHHHHHHHHHhcCCCCCeeEEcCC-ceEEEeeCC------CHHHHHHHHHhCCEEecC--------C---CeEEee-cC
Confidence 89999999998875 35554432 233333222 345677788899998632 1 699987 47
Q ss_pred ChHHHHHHHHHHHHH
Q 011057 426 SRTLAERLVLDITKV 440 (494)
Q Consensus 426 t~~~id~~i~~l~~~ 440 (494)
++++++++++.|+++
T Consensus 378 ~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 378 NDNTIPILARAIIEV 392 (394)
T ss_dssp CTTTHHHHHHHHHHH
T ss_pred CHhhHHHHHHHHHHc
Confidence 889999999888765
No 187
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.89 E-value=2.2e-22 Score=202.61 Aligned_cols=321 Identities=13% Similarity=0.028 Sum_probs=206.8
Q ss_pred CChHHHHHHHHHHhccc-CCCCCCChhhHHHHHHHHHHHHHHhCC--CCCCCCCcceee--ecChhHHHHHHHHHHHHHH
Q 011057 67 WMEPECDKLMMAAINKN-YVDMDEYPVTTELQNRCVNIIARLFNA--PLEDSETAVGVG--TVGSSEAIMLAGLAFKRKW 141 (494)
Q Consensus 67 ~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~--~~~~~~~~~~~~--t~ggt~a~~~a~~a~~~~~ 141 (494)
+++|.+.+++.+.+... ...|...++..++++.+.+++....+. ++ ..+++ |+||++|+.+++.++..-
T Consensus 44 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~-----~~v~~~~~~g~~~a~~~~~~~~~~~- 117 (396)
T 2q7w_A 44 PVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALIND-----KRARTAQTPGGTGALRVAADFLAKN- 117 (396)
T ss_dssp CCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHT-----TCEEEEEESHHHHHHHHHHHHHHHH-
T ss_pred cCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHHHhcCCCCcccc-----ccEEEEecccchhhHHHHHHHHHHh-
Confidence 44578888888776542 234545556777777755555332221 12 23666 999999999888766421
Q ss_pred HHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccC-CccccCHHHHHHhhhh---CCeEEEEeeCCCCccc
Q 011057 142 QNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSE-GYYVMDPVKAVEMVDE---NTICVAAILGSTLNGE 217 (494)
Q Consensus 142 ~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~---~t~~vv~~~~~~~tG~ 217 (494)
. .+++|+++.++|..+...++..|++++.+++++ +++.+|+++|++++.+ +++++++++++||||.
T Consensus 118 -------~---~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~ 187 (396)
T 2q7w_A 118 -------T---SVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGI 187 (396)
T ss_dssp -------S---CCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCC
T ss_pred -------C---CCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCC
Confidence 0 125899999999999999999999999999852 3478999999999975 3677888999999999
Q ss_pred ccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccc-ccc-CCCceEEEEcCcccCC-cCCceEEEEE-
Q 011057 218 FED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEW-DFR-LPLVKSINVSGHKYGL-VYAGIGWVIW- 290 (494)
Q Consensus 218 ~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~-~~~~D~~~~~~hK~l~-~p~g~G~~~~- 290 (494)
+.+ +++|+++|+++ ++++++|++|+.+......+.... .+. ....+++..+++|.+. ++.++|++++
T Consensus 188 ~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~ 261 (396)
T 2q7w_A 188 DPTLEQWQTLAQLSVEK------GWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERVGACTLV 261 (396)
T ss_dssp CCCHHHHHHHHHHHHHH------TCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEE
T ss_pred CCCHHHHHHHHHHHHHC------CCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccccccccccceEEEE
Confidence 854 66899999999 999999999987532100000000 011 1124567788999885 4556899986
Q ss_pred -eCCCC---cccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhc--------HhHHHHHHHHHHHHHHHHHHHH
Q 011057 291 -RNKED---LPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG--------FEGYRNVMENCHENAMVLKEGL 358 (494)
Q Consensus 291 -~~~~~---~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~--------~~g~~~~~~~~~~~a~~l~~~L 358 (494)
.++.. +...+.. ..... . .+. +.+++.++...+. .+.+++..+++.++++++.+.|
T Consensus 262 ~~~~~~~~~~~~~~~~---~~~~~-----~-~~~---~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 329 (396)
T 2q7w_A 262 AADSETVDRAFSQMKA---AIRAN-----Y-SNP---PAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTL 329 (396)
T ss_dssp CSSHHHHHHHHHHHHH---HHHTT-----T-SSC---CHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH---HHhhc-----c-CCC---CcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23211 1111110 00000 0 111 2223333333332 2456677778888999999999
Q ss_pred hhCC---CeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHH
Q 011057 359 EKTG---RFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVL 435 (494)
Q Consensus 359 ~~~~---~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~ 435 (494)
++++ ++++..+ ..+++.|.- .+...+.+.|.++|+.+.. + +|++++. .++++++++++
T Consensus 330 ~~~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~l~~~gv~v~~--------~---~Ris~~~-~~~e~i~~~~~ 390 (396)
T 2q7w_A 330 QEKGANRDFSFIIK--QNGMFSFSG-----LTKEQVLRLREEFGVYAVA--------S---GRVNVAG-MTPDNMAPLCE 390 (396)
T ss_dssp HHTTCCSCCTHHHH--CCSSEEECC-----CCHHHHHHHHHHHCEECCT--------T---CEEEGGG-CCTTTHHHHHH
T ss_pred HhcCCCCCcceecC--CCceEEEec-----CCHHHHHHHHHhcCeeecC--------C---ceEEEee-cCHHHHHHHHH
Confidence 9986 3655443 234444321 2345677778889998632 1 6999874 48899999988
Q ss_pred HHHHH
Q 011057 436 DITKV 440 (494)
Q Consensus 436 ~l~~~ 440 (494)
.|+++
T Consensus 391 ~l~~~ 395 (396)
T 2q7w_A 391 AIVAV 395 (396)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88765
No 188
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.88 E-value=1e-20 Score=192.29 Aligned_cols=331 Identities=12% Similarity=-0.005 Sum_probs=207.2
Q ss_pred ChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 011057 68 MEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA 147 (494)
Q Consensus 68 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~ 147 (494)
++|.+.+++.++++........ ........++++.|+++++.+. ...+++|+||++|+.+++..++.-.
T Consensus 58 ~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~l~~~la~~~~~~~----~~~v~~~~g~~~a~~~~~~~a~~~~------ 126 (426)
T 1sff_A 58 LHPKVVAAVEAQLKKLSHTCFQ-VLAYEPYLELCEIMNQKVPGDF----AKKTLLVTTGSEAVENAVKIARAAT------ 126 (426)
T ss_dssp TCHHHHHHHHHHTTTCSCCCTT-TEECHHHHHHHHHHHHHSSCSS----CEEEEEESSHHHHHHHHHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHhCCCcccc-ccCCHHHHHHHHHHHHhCCccc----ccEEEEeCchHHHHHHHHHHHHHhh------
Confidence 5688999998888653221101 1222344557777999883221 1358999999999998887543211
Q ss_pred cCCCCCCCeEEeCCC-cchHHHHHHHHcCCe-------------eEEEeccC----CccccCHHHHHHhhh-----hCCe
Q 011057 148 EGKPFDKPNIVTGAN-VQVCWEKFARYFEVE-------------LKEVKLSE----GYYVMDPVKAVEMVD-----ENTI 204 (494)
Q Consensus 148 ~g~~~~~~~vi~~~~-~h~s~~~~~~~~G~~-------------v~~v~~~~----~~~~~d~~~L~~~i~-----~~t~ 204 (494)
+ +.+|++.++ .|.....++...|.+ ++.++++. .++.+|+++|+++++ ++++
T Consensus 127 -~----~~~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~ 201 (426)
T 1sff_A 127 -K----RSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIA 201 (426)
T ss_dssp -T----CCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEE
T ss_pred -C----CCeEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceE
Confidence 0 135666554 555555566666653 67777753 124579999999987 3556
Q ss_pred EEEEeeCCCCcccccC----HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCC
Q 011057 205 CVAAILGSTLNGEFED----VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGL 280 (494)
Q Consensus 205 ~vv~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~ 280 (494)
+|+++...++||.+.+ +++|.++|+++ ++++++|++|+++.. .......+.....+|.++ ++|++.
T Consensus 202 ~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~di~s--~sK~~~ 271 (426)
T 1sff_A 202 AIVIEPVQGEGGFYASSPAFMQRLRALCDEH------GIMLIADEVQSGAGR--TGTLFAMEQMGVAPDLTT--FAKSIA 271 (426)
T ss_dssp EEEECSBCTTTTSCBCCHHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGTTSCCSEEE--ECGGGG
T ss_pred EEEEecccCCCCcccCCHHHHHHHHHHHHHc------CCEEEEechhhccCc--ccchhhhhhcCCCCCEEE--Eccccc
Confidence 6666433334997777 99999999999 999999999996421 111111111111367664 559987
Q ss_pred cCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhh
Q 011057 281 VYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 360 (494)
Q Consensus 281 ~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~ 360 (494)
++.++|+++++++ .+ +.+.. .. .. ...+.+.....++.++++.+..+ +..++..++++++.++|++
T Consensus 272 ~GlriG~~~~~~~-~~-~~l~~------~~-~~--~~~~~~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l~~ 337 (426)
T 1sff_A 272 GGFPLAGVTGRAE-VM-DAVAP------GG-LG--GTYAGNPIACVAALEVLKVFEQE---NLLQKANDLGQKLKDGLLA 337 (426)
T ss_dssp TSSCCEEEEEEHH-HH-TTSCT------TS-BC--CSSSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEcHH-HH-hhhcc------CC-cC--cCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHH
Confidence 6566799988753 22 11110 00 00 11222334455566666666543 3556777788888888876
Q ss_pred C----CCeEEeecCCCccEEEEEecC------CCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHH
Q 011057 361 T----GRFNIVSKDEGVPLVAFSLKD------NKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLA 430 (494)
Q Consensus 361 ~----~~~~~~~~~~~~~~v~f~~~~------~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~i 430 (494)
+ +.+....+ ..+++.+.+.. +.+.+..++.++|.++|+.+..... ...++|++++..++++++
T Consensus 338 ~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~-----~~~~iRi~~~~~~~~~~i 410 (426)
T 1sff_A 338 IAEKHPEIGDVRG--LGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGP-----YYNVLRILVPLTIEDAQI 410 (426)
T ss_dssp HHHTCTTEEEEEE--ETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEEST-----TSCEEEECCCTTCCHHHH
T ss_pred HHHhCCCeEEEEE--EEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCC-----CCCEEEEECCccCCHHHH
Confidence 4 32332222 35678888742 1123467899999999998754321 245799999878899999
Q ss_pred HHHHHHHHHHHHHHh
Q 011057 431 ERLVLDITKVLHELD 445 (494)
Q Consensus 431 d~~i~~l~~~~~~l~ 445 (494)
+++++.|++++++++
T Consensus 411 ~~~~~~l~~~l~~~~ 425 (426)
T 1sff_A 411 RQGLEIISQCFDEAK 425 (426)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999987764
No 189
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.88 E-value=6.3e-21 Score=191.63 Aligned_cols=283 Identities=16% Similarity=0.115 Sum_probs=194.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHH----H
Q 011057 96 LQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKF----A 171 (494)
Q Consensus 96 le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~----~ 171 (494)
...++++++++++|.+. .+++++|++|+.+++.++.. .+++|+++.+.|.++... +
T Consensus 60 ~~~~l~~~la~~~g~~~-------~i~~~sG~~ai~~~~~~~~~-------------~gd~vl~~~~~y~~~~~~~~~~~ 119 (389)
T 3acz_A 60 TVEQFEEMVCSIEGAAG-------SAAFGSGMGAISSSTLAFLQ-------------KGDHLIAGDTLYGCTVSLFTHWL 119 (389)
T ss_dssp HHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHTTTCC-------------TTCEEEEESSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCe-------EEEeCCHHHHHHHHHHHHhC-------------CCCEEEEeCCCchHHHHHHHHHH
Confidence 34457777999999863 77788899999888776522 125899999999876554 5
Q ss_pred HHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEEEeccccccc
Q 011057 172 RYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFI 251 (494)
Q Consensus 172 ~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~ 251 (494)
+..|++++.++. .|+++|++++++++++|++++++|++|.+.|+++|.++|+++ |+++++|++|+.+.
T Consensus 120 ~~~g~~~~~v~~------~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~------~~~livD~~~~~~~ 187 (389)
T 3acz_A 120 PRFGIEVDLIDT------SDVEKVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCHER------GARLVVDATFTSPC 187 (389)
T ss_dssp HHTTCEEEEECT------TCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHH------TCEEEEECTTTCTT
T ss_pred HHcCCEEEEECC------CCHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHc------CCEEEEECCCcccc
Confidence 778999998884 488999999999999999999999999999999999999999 99999999998764
Q ss_pred ccccCCcccccccCCCceEEEEcCcccCCcCCc--eEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHH
Q 011057 252 APFLYPELEWDFRLPLVKSINVSGHKYGLVYAG--IGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQY 329 (494)
Q Consensus 252 ~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~ 329 (494)
. ..+ .+ .++|++..++||++++|.+ .|+++.+++..+ +.+.......+ ++. .....|
T Consensus 188 ~--~~~---~~---~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~-~~l~~~~~~~g---------~~~---~~~~~~ 246 (389)
T 3acz_A 188 F--LKP---LE---LGADIALHSVSKYINGHGDVIGGVSSAKTAEDI-ATIKFYRKDAG---------SLM---APMDAF 246 (389)
T ss_dssp T--CCG---GG---TTCSEEEEETTTTTTCSSCCCCEEEEESSHHHH-HHHHHHHHHHC---------CCC---CHHHHH
T ss_pred c--cCc---cc---cCCeEEEECChhhccCCCCceeEEEEECcHHHH-HHHHHHHHhcC---------CCC---CHHHHH
Confidence 2 111 11 2689999999999987766 588887652222 11111111111 111 122344
Q ss_pred HHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecC----------------CCccEEEEEecCCCCCCHHHHHH
Q 011057 330 YQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKD----------------EGVPLVAFSLKDNKRHDEFEVAE 393 (494)
Q Consensus 330 ~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~----------------~~~~~v~f~~~~~~~~~~~~l~~ 393 (494)
++++.+. .+..+.++..+++..+.+.|++.+.++-+..+ ...++++|.+.+ ..++.+
T Consensus 247 ~~~~~l~--~l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~-----~~~~~~ 319 (389)
T 3acz_A 247 LCARGMK--TLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS-----FEAAKK 319 (389)
T ss_dssp HHHHHHT--THHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS-----HHHHHH
T ss_pred HHHcCcc--HHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC-----HHHHHH
Confidence 4444442 34556677778888888888887654422211 125788998842 456777
Q ss_pred HHHhcCceeecc---------ccCCCC--------------CCceEEEEEeccCCChHHHHHHHHHHHHHHH
Q 011057 394 LLRRFGWIVPAY---------TMPADA--------------QHITVLRVVIREDFSRTLAERLVLDITKVLH 442 (494)
Q Consensus 394 ~L~~~Gi~v~~~---------~~~~~~--------------~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~ 442 (494)
.|.+.|+++... ..|... ....++|+|++.. +++.++++|+++++
T Consensus 320 ~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~----~~~~li~~l~~al~ 387 (389)
T 3acz_A 320 LMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIE----NVDDIIADLKQALE 387 (389)
T ss_dssp HHTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSS----CHHHHHHHHHHHHT
T ss_pred HHHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccC----CHHHHHHHHHHHHh
Confidence 888888876442 112110 1136899999854 56666777776654
No 190
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.88 E-value=2e-21 Score=197.23 Aligned_cols=297 Identities=17% Similarity=0.084 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHH----
Q 011057 96 LQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFA---- 171 (494)
Q Consensus 96 le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~---- 171 (494)
...++++.+++++|.+. .+++++|++|+.+++.++.. .+++|+++...|.+....+
T Consensus 59 ~~~~l~~~la~~~g~~~-------~v~~~sGt~A~~~~l~~~~~-------------~gd~vi~~~~~~~~~~~~~~~~~ 118 (421)
T 2ctz_A 59 TVDVLEKRLAALEGGKA-------ALATASGHAAQFLALTTLAQ-------------AGDNIVSTPNLYGGTFNQFKVTL 118 (421)
T ss_dssp HHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHCC-------------TTCEEEECSCCCHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhCCCc-------eEEecCHHHHHHHHHHHHhC-------------CCCEEEEeCCCchHHHHHHHHHH
Confidence 34457777999999863 56677789999988877622 1268999999998876654
Q ss_pred HHcCCeeEEE-eccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEEEeccc-cc
Q 011057 172 RYFEVELKEV-KLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAAS-GG 249 (494)
Q Consensus 172 ~~~G~~v~~v-~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~-~~ 249 (494)
+..|++++.+ +.+ |+++|++++++++++|++++++|++|.+.|+++|.++|+++ |+++++|++| +.
T Consensus 119 ~~~g~~~~~~~~~~------d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~------g~~livD~~~~~~ 186 (421)
T 2ctz_A 119 KRLGIEVRFTSREE------RPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREK------GVALIVDNTFGMG 186 (421)
T ss_dssp HHTTCEEEECCTTC------CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHH------TCEEEEECGGGGG
T ss_pred HHcCCEEEEECCCC------CHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHc------CCEEEEECCcccc
Confidence 7789998888 542 78999999999999999999999999999999999999999 9999999999 65
Q ss_pred ccccccCCcccccccCCCceEEEEcCcccCCcCC-ceEEEEEeC-C-CC----cccccccccCCCCCCCC-C--------
Q 011057 250 FIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYA-GIGWVIWRN-K-ED----LPEELIFHINYLGADQP-T-------- 313 (494)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~-g~G~~~~~~-~-~~----~~~~~~~~~~y~~~~~~-~-------- 313 (494)
+. ..... . .++|++++++||++++|. ++|++++.+ . .. +.........|.+.... .
T Consensus 187 g~---~~~~~--~---~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~ 258 (421)
T 2ctz_A 187 GY---LLRPL--A---WGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIV 258 (421)
T ss_dssp GT---SCCGG--G---GTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHH
T ss_pred cc---cCCcc--c---cCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHH
Confidence 42 11111 1 258999999999998765 467777763 2 11 11110111111111000 0
Q ss_pred ------cccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEee-c----------------C
Q 011057 314 ------FTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVS-K----------------D 370 (494)
Q Consensus 314 ------~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~-~----------------~ 370 (494)
....+. ....+..|.++. +.+.+..+.++..++++++.+.|+++++++.+. + .
T Consensus 259 ~~r~~~~~~~g~--~~~~~~a~~~~~--~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~ 334 (421)
T 2ctz_A 259 KARVDGLRDQGQ--ALGPFEAWVVLL--GMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKG 334 (421)
T ss_dssp HHHHTHHHHHCC--CCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTT
T ss_pred HHHHHHHHhcCC--CCCHHHHHHHHc--CcchHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccC
Confidence 000000 011222333333 233345667777799999999999998888763 2 1
Q ss_pred CCccEEEEEecCCCCCCHHHHHHHHHhcCceeecc------ccCCCC--------------CCceEEEEEeccCCChHHH
Q 011057 371 EGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAY------TMPADA--------------QHITVLRVVIREDFSRTLA 430 (494)
Q Consensus 371 ~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~------~~~~~~--------------~~~~~lRvs~~~~~t~~~i 430 (494)
...++++|.+.+. ..+...+.++|...++.++.. ..|... .....+|+|++. +++
T Consensus 335 ~~g~ivsf~l~~~-~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g~----e~~ 409 (421)
T 2ctz_A 335 KPGAVLTFGLKGG-YEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGL----EHV 409 (421)
T ss_dssp CCCSEEEEEETTH-HHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCS----SCH
T ss_pred CCceEEEEEeCCC-HHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeCC----CCH
Confidence 2467999998541 012233444443333332211 111000 113689999874 678
Q ss_pred HHHHHHHHHHH
Q 011057 431 ERLVLDITKVL 441 (494)
Q Consensus 431 d~~i~~l~~~~ 441 (494)
|.++++|++++
T Consensus 410 ~~li~~l~~al 420 (421)
T 2ctz_A 410 EDLKAELKEAL 420 (421)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 88888888765
No 191
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.88 E-value=2e-20 Score=189.84 Aligned_cols=315 Identities=11% Similarity=-0.049 Sum_probs=200.5
Q ss_pred hHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCC-CCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 011057 69 EPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAP-LEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA 147 (494)
Q Consensus 69 ~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~-~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~ 147 (494)
+|.+.+++.+.++.... +...........++++.+++++|.+ + ..+++|+||++|+..++++++..
T Consensus 61 ~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~la~~~~~~~~-----~~v~~~~gg~ea~~~ai~~~~~~------- 127 (419)
T 2eo5_A 61 HPEVIKIGIEQMQKLAH-AAANDFYNIPQLELAKKLVTYSPGNFQ-----KKVFFSNSGTEAIEASIKVVKNT------- 127 (419)
T ss_dssp CHHHHHHHHHHHTTSCC-CSCSCSCCHHHHHHHHHHHHHSSCSSC-----EEEEEESSHHHHHHHHHHHHHTT-------
T ss_pred CHHHHHHHHHHHhhCcc-ccccccCCHHHHHHHHHHHHhCCCCcC-----CEEEEeCchHHHHHHHHHHHHHh-------
Confidence 68899999888865421 2111122344556778899999985 3 35999999999999998876431
Q ss_pred cCCCCCCCeEEeCCC-cchHHHHHHHHcC-------------CeeEEEeccCCccc----------------cCHHHHH-
Q 011057 148 EGKPFDKPNIVTGAN-VQVCWEKFARYFE-------------VELKEVKLSEGYYV----------------MDPVKAV- 196 (494)
Q Consensus 148 ~g~~~~~~~vi~~~~-~h~s~~~~~~~~G-------------~~v~~v~~~~~~~~----------------~d~~~L~- 196 (494)
.+++|++.++ .|.....++...| .+++.++.+++ +. +|+++|+
T Consensus 128 -----~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~g~~~~~~~~~~~~~~~~~l~~ 201 (419)
T 2eo5_A 128 -----GRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNP-YRNPWHINGYENPSELVNRVIEFIED 201 (419)
T ss_dssp -----SCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCS-SSCTTCCCTTTCHHHHHHHHHHHHHH
T ss_pred -----hCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCcc-ccccccccccccchhhHHHHHHHHHH
Confidence 0256776665 5555444443322 35778877542 22 4689999
Q ss_pred Hhhhh-----CCeEEEEeeCC-CCcccccC----HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCC
Q 011057 197 EMVDE-----NTICVAAILGS-TLNGEFED----VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLP 266 (494)
Q Consensus 197 ~~i~~-----~t~~vv~~~~~-~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 266 (494)
+++++ ++++|+ +.|+ +++|.+.+ +++|.++|+++ ++++|+|++|.++.. .......+....
T Consensus 202 ~~i~~~~~~~~~~~vi-~~p~~~~tG~~~~~~~~l~~l~~l~~~~------~~~li~DE~~~~~g~--~g~~~~~~~~~~ 272 (419)
T 2eo5_A 202 YIFVNLVPPEEVAGIF-FEPIQGEGGYVIPPKNFFAELQKLAKKY------GILLVDDEVQMGLGR--TGKLFAIENFNT 272 (419)
T ss_dssp THHHHTCCGGGEEEEE-ECSSBTTTTSBCCCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGGTC
T ss_pred HHHhhccCCCCEEEEE-EeCccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccCCcc--CcchhhHHhcCC
Confidence 98873 444444 5555 56898766 99999999999 999999999986421 111111111112
Q ss_pred CceEEEEcCcccCCcC-CceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHH
Q 011057 267 LVKSINVSGHKYGLVY-AGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVME 345 (494)
Q Consensus 267 ~~D~~~~~~hK~l~~p-~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~ 345 (494)
..|.+++ .|.+.++ .++|+++++++ .+ .+. ... ..+ .+.+.....+..++++.+. +..+
T Consensus 273 ~~d~~t~--sK~~~~G~~riG~~~~~~~-~~--~~~---~~~-----~~t--~~~n~~~~~aa~aal~~~~-----~~~~ 332 (419)
T 2eo5_A 273 VPDVITL--AKALGGGIMPIGATIFRKD-LD--FKP---GMH-----SNT--FGGNALACAIGSKVIDIVK-----DLLP 332 (419)
T ss_dssp CCSEEEE--CGGGGTTTSCCEEEEEEGG-GC--CC--------------C--CCCCHHHHHHHHHHHHHHH-----HHHH
T ss_pred CCCEEEe--cccccCCccceEEEEEchH-hh--cCC---ccc-----CCC--CCCCHHHHHHHHHHHHHHH-----HHHH
Confidence 4576654 4777667 88999988653 22 111 000 011 1222333444445554332 2677
Q ss_pred HHHHHHHHHHHHHhhCCCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCC
Q 011057 346 NCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDF 425 (494)
Q Consensus 346 ~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~ 425 (494)
+..+++++|.+.|+++ +..+.. ..+++.+.+.+. ..... +.++|.++|+.+... +..++|++++..+
T Consensus 333 ~~~~~~~~l~~~L~~~--~~~~~~--~g~~~~i~~~~~-~~~~~-~~~~l~~~Gv~v~~~-------~~~~lRis~~~~~ 399 (419)
T 2eo5_A 333 HVNEIGKIFAEELQGL--ADDVRG--IGLAWGLEYNEK-KVRDR-IIGESFKRGLLLLPA-------GRSAIRVIPPLVI 399 (419)
T ss_dssp HHHHHHHHHHHHHTTS--SSEEEE--ETTEEEEECSCH-HHHHH-HHHHHHHTTEECEEE-------TTTEEEECCCTTC
T ss_pred HHHHHHHHHHHHHHHh--hhheEe--eeEEEEEEEecC-ccHHH-HHHHHHHCCCEEecC-------CCCEEEEECCCCC
Confidence 8888999999999886 222222 356777776321 11245 889999999987542 1357999988788
Q ss_pred ChHHHHHHHHHHHHHHHHH
Q 011057 426 SRTLAERLVLDITKVLHEL 444 (494)
Q Consensus 426 t~~~id~~i~~l~~~~~~l 444 (494)
++++++++++.|+++++++
T Consensus 400 t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 400 SEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp CHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 9999999999999887653
No 192
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.88 E-value=1.7e-21 Score=196.59 Aligned_cols=353 Identities=11% Similarity=0.055 Sum_probs=216.5
Q ss_pred HHHHHHHHhhhhcCCC-CCccccccc-C-----CChHHHHHHHHHHhcc-cCCCCCCChhhHHHHHHHHHHHHHHhCCCC
Q 011057 41 AAYQIINDELMLDGNP-RLNLASFVT-T-----WMEPECDKLMMAAINK-NYVDMDEYPVTTELQNRCVNIIARLFNAPL 112 (494)
Q Consensus 41 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~-----~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~le~~~~~~la~l~g~~~ 112 (494)
.++...+.+. .+.++ .++|+.+.+ . +..+.+.+++...... ....|....+..++++.+.+++...+|.+.
T Consensus 14 ~i~~~~~~~~-~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~ 92 (401)
T 7aat_A 14 PILGVTEAFK-RDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAF 92 (401)
T ss_dssp HHHHHHHHHH-HCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHH
T ss_pred hhHHHHHHHh-hCCCCCceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCcccc
Confidence 3444433332 33344 355565553 1 1235677877776653 233455555777877777777765555321
Q ss_pred CCCCCcceee--ecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEecc-CCccc
Q 011057 113 EDSETAVGVG--TVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLS-EGYYV 189 (494)
Q Consensus 113 ~~~~~~~~~~--t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~-~~~~~ 189 (494)
+ ...+++ |+||++|+.+++.++.... + .+++|+++.++|..+...++..|++++.++++ ++++.
T Consensus 93 ~---~~~i~~v~t~G~~~al~~~~~~l~~~~-------~---~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 159 (401)
T 7aat_A 93 K---SGRYVTVQGISGTGSLRVGANFLQRFF-------K---FSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCS 159 (401)
T ss_dssp H---TTCEEEEEEEHHHHHHHHHHHHHHHHC-------T---TCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTE
T ss_pred c---cCceEEEecCcchHHHHHHHHHHHHhc-------c---CCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCc
Confidence 1 123655 9999999998877664210 0 12689999999999999999999999999985 33478
Q ss_pred cCHHHHHHhhh---hCCeEEEEeeCCCCcccc---cCHHHHHHHHHHhhcccCCCceEEEecccccccccccC-Cc--cc
Q 011057 190 MDPVKAVEMVD---ENTICVAAILGSTLNGEF---EDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLY-PE--LE 260 (494)
Q Consensus 190 ~d~~~L~~~i~---~~t~~vv~~~~~~~tG~~---~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~-~~--~~ 260 (494)
+|++++++.+. +++++|++++++||||.+ +++++|+++|+++ ++++++|++|+.+...-.. +. ..
T Consensus 160 ~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~------~~~li~Deay~~~~~~~~~~~~~~~~ 233 (401)
T 7aat_A 160 LDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKR------NLLAYFDMAYQGFASGDINRDAWALR 233 (401)
T ss_dssp ECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEEESCTTTTTSCHHHHTHHHH
T ss_pred cCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhC------CcEEEEccccccccCCCccccHHHHH
Confidence 99998777765 467899999999999966 5588899999999 9999999999875421000 00 00
Q ss_pred ccccCCCceEEEEcCcccCC-cCCceEEEEEeCC-CCcccccccc-cCCCCCCCCCcccccCcchHHHHHHHHHHHHhc-
Q 011057 261 WDFRLPLVKSINVSGHKYGL-VYAGIGWVIWRNK-EDLPEELIFH-INYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG- 336 (494)
Q Consensus 261 ~~~~~~~~D~~~~~~hK~l~-~p~g~G~~~~~~~-~~~~~~~~~~-~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~- 336 (494)
.......-.++..+++|.+. ++.++|++++... ......+... ..+.. ...... ...++.++...+.
T Consensus 234 ~~~~~~~~~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~---~~~~~~~~~~~l~~ 304 (401)
T 7aat_A 234 HFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIR------PMYSNP---PMNGARIASLILNT 304 (401)
T ss_dssp HHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHH------HHHSSC---CHHHHHHHHHHHHC
T ss_pred HHHhcCCcEEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHH------hccCCC---ChHHHHHHHHHhCC
Confidence 00112234567788999874 5667899886321 1100000000 00000 000111 1222333322221
Q ss_pred -------HhHHHHHHHHHHHHHHHHHHHHhhCC---CeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccc
Q 011057 337 -------FEGYRNVMENCHENAMVLKEGLEKTG---RFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYT 406 (494)
Q Consensus 337 -------~~g~~~~~~~~~~~a~~l~~~L~~~~---~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~ 406 (494)
.+.+++..+++.++++++.+.|++++ ++++..+ ..+++.|. +++.+.+...|.++|+.+..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~ll~~~gi~v~~-- 375 (401)
T 7aat_A 305 PELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITD--QIGMFCFT-----GLKPEQVERLTKEFSIYMTK-- 375 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHH--CCSSEEEC-----CCCHHHHHHHHHHHCEECCT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceecC--CcceEEec-----CCCHHHHHHHHHhCCEeccC--
Confidence 23356677788889999999999874 2444333 34555442 13455554455778997521
Q ss_pred cCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHH
Q 011057 407 MPADAQHITVLRVVIREDFSRTLAERLVLDITKVL 441 (494)
Q Consensus 407 ~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~ 441 (494)
+ +|++++.. +.++|+++++.|++++
T Consensus 376 ------~---~Ris~~~~-~~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 376 ------D---GRISVAGV-ASSNVGYLAHAIHQVT 400 (401)
T ss_dssp ------T---CEEEGGGC-CTTTHHHHHHHHHHHH
T ss_pred ------C---CeEEeccC-ChhhHHHHHHHHHHHh
Confidence 1 79999754 5556999999988765
No 193
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.88 E-value=3.3e-21 Score=196.91 Aligned_cols=330 Identities=10% Similarity=-0.055 Sum_probs=204.7
Q ss_pred ChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 011057 68 MEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA 147 (494)
Q Consensus 68 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~ 147 (494)
.+|.+.+++.+.+... ..+....+..++..+++++|+++++...+ ..+++|+||++|+..++.+++...
T Consensus 60 ~~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~~~~~~----~~v~~~~ggsea~~~al~~~~~~~------ 128 (439)
T 3dxv_A 60 GHPAIVAAVSAAAANP-AGATILSASNAPAVTLAERLLASFPGEGT----HKIWFGHSGSDANEAAYRAIVKAT------ 128 (439)
T ss_dssp SCHHHHHHHHHHHHSC-SCSCSSSSEEHHHHHHHHHHHHTTTCTTT----EEEEEESSHHHHHHHHHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHhc-cCccccccCCHHHHHHHHHHHHhCCCCCC----CEEEEeCCHHHHHHHHHHHHHHHh------
Confidence 5788999988887654 22332334556777889999999854320 259999999999999998875421
Q ss_pred cCCCCCCCeEE-eCCCcchHHHHHHHHcCCee--------------EEEeccCCcccc-----CHHHHHHhh----hhCC
Q 011057 148 EGKPFDKPNIV-TGANVQVCWEKFARYFEVEL--------------KEVKLSEGYYVM-----DPVKAVEMV----DENT 203 (494)
Q Consensus 148 ~g~~~~~~~vi-~~~~~h~s~~~~~~~~G~~v--------------~~v~~~~~~~~~-----d~~~L~~~i----~~~t 203 (494)
+ ++.|+ .....|.....++...|... ..++.+.. +.. |+++|++++ .+++
T Consensus 129 -~----~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~~~~ 202 (439)
T 3dxv_A 129 -G----RSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPY-RNDPTGDAILTLLTEKLAAVPAGSI 202 (439)
T ss_dssp -S----CCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCB-TTBTTSHHHHHHHHHHHHTSCTTCE
T ss_pred -C----CCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcc-cccccHHHHHHHHHHHHHhcCCCCE
Confidence 1 13454 45556666655554444322 23333221 112 789999999 3456
Q ss_pred eEEEEeeCCCCcccccC----HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccC
Q 011057 204 ICVAAILGSTLNGEFED----VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYG 279 (494)
Q Consensus 204 ~~vv~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l 279 (494)
++|++..+++++|.+.| +++|.++|++| ++++++|++|+++.. .......+......|.++ +.|.+
T Consensus 203 ~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~------~~~li~DE~~~g~g~--~g~~~~~~~~~~~~di~s--~sK~~ 272 (439)
T 3dxv_A 203 GAAFIEPIQSDGGLIVPPDGFLRKFADICRAH------GILVVCDEVKVGLAR--SGRLHCFEHEGFVPDILV--LGKGL 272 (439)
T ss_dssp EEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT------TCEEEEECTTTCTTT--TSSSSGGGGTTCCCSEEE--ECGGG
T ss_pred EEEEEccccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccCCCc--CchhhHHHhcCCCCCEEE--Ecchh
Confidence 77777777778899988 99999999999 999999999985421 111111111112357664 45888
Q ss_pred CcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHh
Q 011057 280 LVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLE 359 (494)
Q Consensus 280 ~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~ 359 (494)
.++.++|+++.+.. .+ +.+ .......+ . .+.....+..++++.+.. ++..++..++.+++++.|+
T Consensus 273 ~~G~riG~~~~~~~-~~-~~~-------~~~~~~~t--~-~~~~~~~aa~aal~~~~~---~~~~~~~~~~~~~~~~~l~ 337 (439)
T 3dxv_A 273 GGGLPLSAVIAPAE-IL-DCA-------SAFAMQTL--H-GNPISAAAGLAVLETIDR---DDLPAMAERKGRLLRDGLS 337 (439)
T ss_dssp GTTSCCEEEEEEHH-HH-TSC-------SSSSCCTT--T-TCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHH
T ss_pred cCCcceEEEEECHH-HH-hhh-------cCCCcCCC--c-ccHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHH
Confidence 77777899887642 21 111 10000111 1 222333444445554433 3445566666666666665
Q ss_pred h----CCCeEEeecCCCccEEEEEecC------CCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHH
Q 011057 360 K----TGRFNIVSKDEGVPLVAFSLKD------NKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTL 429 (494)
Q Consensus 360 ~----~~~~~~~~~~~~~~~v~f~~~~------~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~ 429 (494)
+ .+.+..... ..+++.+.+.. +...+..++.+.|.++|+.+.... ....++|++++..+++++
T Consensus 338 ~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~iRi~~~~~~t~e~ 410 (439)
T 3dxv_A 338 ELAKRHPLIGDIRG--RGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVG-----MNGNVLEFTPPLTITETD 410 (439)
T ss_dssp HHHHHCTTEEEEEE--ETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEES-----TTSCEEEECCCTTCCHHH
T ss_pred HHHHhCCCeEEEEE--EEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecC-----CCCCEEEEECCCCCCHHH
Confidence 5 343443333 34666666521 112235688999999999875431 123679999888889999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 011057 430 AERLVLDITKVLHELDS 446 (494)
Q Consensus 430 id~~i~~l~~~~~~l~~ 446 (494)
++++++.|+++++++.+
T Consensus 411 i~~~l~~l~~~l~~~~~ 427 (439)
T 3dxv_A 411 IHKALDLLDRAFSELSA 427 (439)
T ss_dssp HHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999887765
No 194
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.87 E-value=1.1e-21 Score=197.84 Aligned_cols=283 Identities=17% Similarity=0.100 Sum_probs=183.1
Q ss_pred HHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHH----HHHH
Q 011057 98 NRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEK----FARY 173 (494)
Q Consensus 98 ~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~----~~~~ 173 (494)
.++++.+++++|.+. .+++++|++|+.+++. +.. .+++|+++.+.|.+... .++.
T Consensus 70 ~~l~~~la~~~g~~~-------~i~~~sG~~ai~~~~~-l~~-------------~gd~Vl~~~~~y~~~~~~~~~~~~~ 128 (403)
T 3cog_A 70 NCLEKAVAALDGAKY-------CLAFASGLAATVTITH-LLK-------------AGDQIICMDDVYGGTNRYFRQVASE 128 (403)
T ss_dssp HHHHHHHHHHHTCSE-------EEEESCHHHHHHHHHT-TSC-------------TTCEEEEESSCCHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHhCCCc-------EEEECCHHHHHHHHHH-HhC-------------CCCEEEEeCCCcchHHHHHHHHHHH
Confidence 345566899998863 5566667899887776 421 12589999999986444 3456
Q ss_pred cCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCC-ceEEEecccccccc
Q 011057 174 FEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWD-TPIHVDAASGGFIA 252 (494)
Q Consensus 174 ~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~-~~l~vD~a~~~~~~ 252 (494)
.|++++.++.+ |+++|+++++++|++|++++++||+|.+.|+++|+++|+++ + +++++|++|+.+..
T Consensus 129 ~G~~v~~v~~~------d~~~l~~~i~~~t~~v~~~~p~nptG~~~~l~~i~~la~~~------g~~~livD~~~~~~~~ 196 (403)
T 3cog_A 129 FGLKISFVDCS------KIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKH------GDIILVVDNTFMSPYF 196 (403)
T ss_dssp GTCEEEEECTT------SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTSS------SCCEEEEECTTTCTTT
T ss_pred cCCEEEEECCC------CHHHHHHhcCcCCeEEEEECCCCCCCeeeCHHHHHHHHHHc------CCCEEEEECCCccccc
Confidence 79999988853 78999999999999999999999999999999999999999 9 99999999987642
Q ss_pred cccCCcccccccCCCceEEEEcCcccCCcCCc--eEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHH
Q 011057 253 PFLYPELEWDFRLPLVKSINVSGHKYGLVYAG--IGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYY 330 (494)
Q Consensus 253 ~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~ 330 (494)
..+ .+ .++|++..++||++++|.+ +|+++++++... ..+.......+ .+. ..+.+|+
T Consensus 197 --~~~---~~---~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~-~~l~~~~~~~g---------~~~---~~~~~~~ 255 (403)
T 3cog_A 197 --QRP---LA---LGADISMYSATKYMNGHSDVVMGLVSVNCESLH-NRLRFLQNSLG---------AVP---SPIDCYL 255 (403)
T ss_dssp --CCT---TT---TTCSEEEEETTTTTTCSSCCCCEEEEECCHHHH-HHHHHHHHHHC---------CCC---CHHHHHH
T ss_pred --CCc---cc---cCCeEEEEcChhhccCCCCCeEEEEEECcHHHH-HHHHHHHHhcC---------CCC---CHHHHHH
Confidence 111 11 2689999999999988776 488887654322 11111100010 111 1233444
Q ss_pred HHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCC--------------eEEeecC--CCccEEEEEecCCCCCCHHHHHHH
Q 011057 331 QLIRLGFEGYRNVMENCHENAMVLKEGLEKTGR--------------FNIVSKD--EGVPLVAFSLKDNKRHDEFEVAEL 394 (494)
Q Consensus 331 al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~--------------~~~~~~~--~~~~~v~f~~~~~~~~~~~~l~~~ 394 (494)
+++.+. .+..+.++..+++..+.+.|++.+. +++..+. ...++++|.+++ ...++.+.
T Consensus 256 ~~~~l~--~l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~----~~~~~~~~ 329 (403)
T 3cog_A 256 CNRGLK--TLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKG----TLQHAEIF 329 (403)
T ss_dssp HHHHHT--THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESS----CHHHHHHH
T ss_pred HHhhhh--HHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecC----CHHHHHHH
Confidence 444432 2344556666666666666665543 3222211 136789998854 23566777
Q ss_pred HHhcCceeeccc---------cCCC--------------CCCceEEEEEeccCCChHHHHHHHHHHHHHHHHH
Q 011057 395 LRRFGWIVPAYT---------MPAD--------------AQHITVLRVVIREDFSRTLAERLVLDITKVLHEL 444 (494)
Q Consensus 395 L~~~Gi~v~~~~---------~~~~--------------~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l 444 (494)
|.+.|+++.... .|.. ......+|+|++...+.++ +++|.++++.+
T Consensus 330 l~~~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~----i~~l~~al~~~ 398 (403)
T 3cog_A 330 LKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDL----LEDLDQALKAA 398 (403)
T ss_dssp HHHCSSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHH----HHHHHHHHHHH
T ss_pred HHhCCcceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHH----HHHHHHHHHHh
Confidence 778888653321 1110 0114689999987555444 45555555443
No 195
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.87 E-value=3.4e-20 Score=189.95 Aligned_cols=338 Identities=15% Similarity=0.057 Sum_probs=206.9
Q ss_pred ChHHHHHHHHHHhcccCCCCCCC-hhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHH
Q 011057 68 MEPECDKLMMAAINKNYVDMDEY-PVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRK 146 (494)
Q Consensus 68 ~~p~~~~~~~~~~~~~~~~~~~~-~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~ 146 (494)
.+|.+.+++.+.+.... +..+ ....++..++++.|+++++.+. ..+++|+||++|+.+++.+++.....
T Consensus 67 ~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~l~~~la~~~~~~~-----~~v~~~~ggsea~~~al~~~~~~~~~--- 136 (449)
T 3a8u_X 67 TRKEIQEAVAKQLSTLD--YSPGFQYGHPLSFQLAEKITDLTPGNL-----NHVFFTDSGSECALTAVKMVRAYWRL--- 136 (449)
T ss_dssp SCHHHHHHHHHHTTTCS--CCCSSSCCCHHHHHHHHHHHTTSSTTE-----EEEEEESSHHHHHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHhCC--CccccccCCHHHHHHHHHHHHhCCCCC-----CEEEEcCcHHHHHHHHHHHHHHHHHh---
Confidence 46889999988886532 1111 2334455678888999887543 35999999999999999887643211
Q ss_pred hcCCCCCCCeEEe-CCCcchHHHHHHHHcCC------------eeEEEeccCCcc-----ccC--------HHHHHHhhh
Q 011057 147 AEGKPFDKPNIVT-GANVQVCWEKFARYFEV------------ELKEVKLSEGYY-----VMD--------PVKAVEMVD 200 (494)
Q Consensus 147 ~~g~~~~~~~vi~-~~~~h~s~~~~~~~~G~------------~v~~v~~~~~~~-----~~d--------~~~L~~~i~ 200 (494)
.|. ..+++|++ +...|.....++...|. +++.++++.. + .+| +++|+++++
T Consensus 137 -~g~-~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~d~~~~~~~~~~~le~~l~ 213 (449)
T 3a8u_X 137 -KGQ-ATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLL-ASNAYSRGMPKEGGIALADELLKLIE 213 (449)
T ss_dssp -TTC-TTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCC-GGGTTCSSSCSSSHHHHHHHHHHHHH
T ss_pred -cCC-CCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCcc-ccCccccCChHHHHHHHHHHHHHHHH
Confidence 111 11246766 44556555555555442 3566665421 1 146 999999997
Q ss_pred ----hCCeEEEEeeCCCCcccccC----HHHHHHHHHHhhcccCCCceEEEecccccccccccCCccccc-ccCCCceEE
Q 011057 201 ----ENTICVAAILGSTLNGEFED----VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWD-FRLPLVKSI 271 (494)
Q Consensus 201 ----~~t~~vv~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~D~~ 271 (494)
+++++|++...++++|.+.| +++|.++|++| ++++++|++|.++.. .......+ ++. ..|++
T Consensus 214 ~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~------~~~li~Dev~~~~g~--~g~~~~~~~~~~-~~di~ 284 (449)
T 3a8u_X 214 LHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQH------NILLVFDEVITGFGR--TGSMFGADSFGV-TPDLM 284 (449)
T ss_dssp HHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSHHHHHTC-CCSEE
T ss_pred hcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHh------CCEEEEeccccCccc--cCcchhhhhcCC-CCCEE
Confidence 34555555444467999888 99999999999 999999999964321 11111111 121 35766
Q ss_pred EEcCcccCCcC-CceEEEEEeCCCCcccccccccC--CCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHH
Q 011057 272 NVSGHKYGLVY-AGIGWVIWRNKEDLPEELIFHIN--YLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCH 348 (494)
Q Consensus 272 ~~~~hK~l~~p-~g~G~~~~~~~~~~~~~~~~~~~--y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~ 348 (494)
++ .|++.++ ..+|+++++++ .+ +.+..... .........+ .+.+.....++.++++.+..+ +..++..
T Consensus 285 s~--sK~l~~G~~~~G~~~~~~~-~~-~~l~~~~~~~~~~~~~~~~t--~~~~~~~~aa~~aal~~~~~~---~~~~~~~ 355 (449)
T 3a8u_X 285 CI--AKQVTNGAIPMGAVIASTE-IY-QTFMNQPTPEYAVEFPHGYT--YSAHPVACAAGLAALCLLQKE---NLVQSVA 355 (449)
T ss_dssp EE--CGGGGTTSSCCEEEEEEHH-HH-HHHHTCSSCTTSCSSCCCCT--TTTCHHHHHHHHHHHHHHHHT---THHHHHH
T ss_pred EE--cccccCCCCceEEEEECHH-HH-HHhhccCcccccccccccCC--CcccHHHHHHHHHHHHHHHhc---CHHHHHH
Confidence 54 4887654 45899887642 22 22211100 0000000111 222334445555666655443 4567788
Q ss_pred HHHHHHHHHHhhCCCeEEeec-CCCccEEEEEecCCCC-C--CHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccC
Q 011057 349 ENAMVLKEGLEKTGRFNIVSK-DEGVPLVAFSLKDNKR-H--DEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIRED 424 (494)
Q Consensus 349 ~~a~~l~~~L~~~~~~~~~~~-~~~~~~v~f~~~~~~~-~--~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~ 424 (494)
++.++++++|++++++.++.. +...+++.+.+..... . +..++.++|.++|+.+... + .++|++....
T Consensus 356 ~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-------g-~~iRis~~~~ 427 (449)
T 3a8u_X 356 EVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRFG-------G-DTLQFGPTFN 427 (449)
T ss_dssp HHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBSSHHHHHHHHHHHHHTEECEEE-------T-TEEEECCCTT
T ss_pred HHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcccccccHHHHHHHHHHCCcEEecC-------C-CEEEEECCCc
Confidence 888999999987543322111 1134678888754211 1 2347999999999987542 2 5799998778
Q ss_pred CChHHHHHHHHHHHHHHHHH
Q 011057 425 FSRTLAERLVLDITKVLHEL 444 (494)
Q Consensus 425 ~t~~~id~~i~~l~~~~~~l 444 (494)
+++++++++++.|+++++++
T Consensus 428 ~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 428 SKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp CCHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999887653
No 196
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.87 E-value=1.7e-20 Score=192.14 Aligned_cols=341 Identities=13% Similarity=0.118 Sum_probs=207.9
Q ss_pred hcCCCC-Cccccccc-C-----CChHHHHHHHHHHhc---ccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCccee
Q 011057 52 LDGNPR-LNLASFVT-T-----WMEPECDKLMMAAIN---KNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGV 121 (494)
Q Consensus 52 ~~~~~~-~~~~~~~~-~-----~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~ 121 (494)
.++++. ++|+.+.+ + +..+.+.+++..... .....|....+..++++.+.+++ +|.+....+...++
T Consensus 45 ~~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l---~g~~~~~~~~~~i~ 121 (448)
T 3meb_A 45 ADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLM---FGKDSKAAQEGRIA 121 (448)
T ss_dssp HCCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHH---HCTTCHHHHTTCEE
T ss_pred hCCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHh---cCCCccccCcCcEE
Confidence 455554 66666554 2 223567777655541 22233444456666666644444 37652000012477
Q ss_pred e--ecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHH----HcCCeeEEEec-cCC-ccccCHH
Q 011057 122 G--TVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFAR----YFEVELKEVKL-SEG-YYVMDPV 193 (494)
Q Consensus 122 ~--t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~----~~G~~v~~v~~-~~~-~~~~d~~ 193 (494)
+ |+||++|+.+++..... .. .+++|+++.++|..+...++ ..|++++.+++ +++ ++.+|++
T Consensus 122 ~~~t~ggt~al~l~~~~~~~-~~----------~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e 190 (448)
T 3meb_A 122 SCQSLSGTGSLHIGFEFLHL-WM----------PKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFS 190 (448)
T ss_dssp EEEESHHHHHHHHHHHHHHH-HC----------TTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHH
T ss_pred EEECCcHHHHHHHHHHHHHH-hC----------CCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHH
Confidence 8 99999999875432211 10 12689999999999999999 89999999998 554 5789999
Q ss_pred HHHHhhhh---CCeEEEEeeCCCCcccccC---HHHHHHHHHHhhcccCCCceEEEeccccccccccc-CCcccc-cc-c
Q 011057 194 KAVEMVDE---NTICVAAILGSTLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFL-YPELEW-DF-R 264 (494)
Q Consensus 194 ~L~~~i~~---~t~~vv~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~-~~~~~~-~~-~ 264 (494)
+|++++++ +++++++++++||||.+.+ +++|+++|+++ ++++++|++|+++...-. .+.... .+ .
T Consensus 191 ~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~------~~~li~Deay~~~~~~~~~~~~~~~~~~~~ 264 (448)
T 3meb_A 191 NTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEK------KHIAFFDSAYQGFATGSFEADAFAVRMFVD 264 (448)
T ss_dssp HHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEEESCTTTSSSCHHHHTHHHHHHHH
T ss_pred HHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHC------CCEEEEecccccccCCCcccCchhHHHHhh
Confidence 99999985 5778888999999999866 55699999999 999999999987542100 000000 01 1
Q ss_pred CCCceEEEEcCcccCC-cCCceEEE--EE--------eCCCC---cccccccccCCCCCCCCCcccccCcchHHHHHHHH
Q 011057 265 LPLVKSINVSGHKYGL-VYAGIGWV--IW--------RNKED---LPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYY 330 (494)
Q Consensus 265 ~~~~D~~~~~~hK~l~-~p~g~G~~--~~--------~~~~~---~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~ 330 (494)
...-.++..+++|.+. .+.++|++ ++ .++.. +...+.....+. . .. ...+++++
T Consensus 265 ~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--------~-~~---~~~~~~~a 332 (448)
T 3meb_A 265 AGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKT--------W-SM---SAIHGAYI 332 (448)
T ss_dssp TTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTT--------T-SS---CCHHHHHH
T ss_pred cCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcc--------c-CC---ccHHHHHH
Confidence 1223455778999875 56678987 54 33211 111110000000 0 11 12233334
Q ss_pred HHHHhcH--------hHHHHHHHHHHHHHHHHHHHHhhC--CC------eEEeecCCCccEEEEEecCCCCCCHHHHHHH
Q 011057 331 QLIRLGF--------EGYRNVMENCHENAMVLKEGLEKT--GR------FNIVSKDEGVPLVAFSLKDNKRHDEFEVAEL 394 (494)
Q Consensus 331 al~~l~~--------~g~~~~~~~~~~~a~~l~~~L~~~--~~------~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~ 394 (494)
+...+.. +.+++..+++.+++++|.+.|+++ ++ ++...+ ..++++|. +++. ++..+
T Consensus 333 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~--~~g~~~~~-----~~~~-~~~~~ 404 (448)
T 3meb_A 333 VQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILT--AIGMFTFT-----GLTP-EHVDY 404 (448)
T ss_dssp HHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHH--CCSSEEEC-----CCCH-HHHHH
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCC--CceEEEec-----CCCH-HHHHH
Confidence 3333322 335677788889999999999987 33 433333 23444442 1234 45555
Q ss_pred H-HhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHH
Q 011057 395 L-RRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHE 443 (494)
Q Consensus 395 L-~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~ 443 (494)
| .++|+.+... . .|+++.. .+.++++++++.|++++++
T Consensus 405 ll~~~gV~v~~G--------~--gRis~a~-~~~~~i~~~~~~l~~~l~~ 443 (448)
T 3meb_A 405 LKEKWSIYLVKA--------G--GRMSMCG-LTESNCDYVAEAIHDAVTK 443 (448)
T ss_dssp HHHHHCEEECSG--------G--GEEEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred HHHhCCEEEeCC--------C--cEEEEec-CCHHHHHHHHHHHHHHHHh
Confidence 5 6779986331 1 2999864 4667799999999988873
No 197
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.87 E-value=3.1e-19 Score=183.39 Aligned_cols=356 Identities=14% Similarity=0.002 Sum_probs=211.0
Q ss_pred cCCCCCcccccc----cCCChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhH
Q 011057 53 DGNPRLNLASFV----TTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSE 128 (494)
Q Consensus 53 ~~~~~~~~~~~~----~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~ 128 (494)
+|+.++.+.++. ..+.+|.+.+++.+.+......+....+..+...+++++|+++++.+. ..+++|+||++
T Consensus 49 ~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~-----~~v~~~~gGse 123 (460)
T 3gju_A 49 NGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHGTEASITLAKMIIDRAPKGM-----SRVYFGLSGSD 123 (460)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCCCTTCCCHHHHHHHHHHHHHSCTTE-----EEEEEESSHHH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHhhCCCCc-----CEEEEeCchHH
Confidence 455555555431 123468899998888776443333333444566778889999876543 35999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCC-CcchHHHHHHHHcC------------CeeEEEeccC----CccccC
Q 011057 129 AIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGA-NVQVCWEKFARYFE------------VELKEVKLSE----GYYVMD 191 (494)
Q Consensus 129 a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~-~~h~s~~~~~~~~G------------~~v~~v~~~~----~~~~~d 191 (494)
|+..++++++..+.. .|.+ .+.+|++.+ ..|.....++...| ..+..++... ++..++
T Consensus 124 A~~~al~~~~~~~~~----~g~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 198 (460)
T 3gju_A 124 ANETNIKLIWYYNNV----LGRP-EKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMS 198 (460)
T ss_dssp HHHHHHHHHHHHHHH----TTCT-TCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCC
T ss_pred HHHHHHHHHHHHHHh----cCCC-CCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccC
Confidence 999999988764322 1211 234666544 45544433333322 2355666432 111223
Q ss_pred --------HHHHHHhhh----hCCeEEEEeeCCCCcccccC----HHHHHHHHHHhhcccCCCceEEEeccccccccccc
Q 011057 192 --------PVKAVEMVD----ENTICVAAILGSTLNGEFED----VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFL 255 (494)
Q Consensus 192 --------~~~L~~~i~----~~t~~vv~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~ 255 (494)
+++|++++. +++++|++...++++|.+.+ +++|.++|++| |+++++|++|.++.. .
T Consensus 199 ~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~------~~llI~DEv~~g~gr--~ 270 (460)
T 3gju_A 199 EEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKY------DVLLVADEVVTGFGR--L 270 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--T
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccCCCc--c
Confidence 688998887 34556666655667777665 99999999999 999999999986521 1
Q ss_pred CCcccc-cccCCCceEEEEcCcccCCcC-CceEEEEEeCCCCcccccccc----cCCCCCCCCCcccccCcchHHHHHHH
Q 011057 256 YPELEW-DFRLPLVKSINVSGHKYGLVY-AGIGWVIWRNKEDLPEELIFH----INYLGADQPTFTLNFSKGSSQVIAQY 329 (494)
Q Consensus 256 ~~~~~~-~~~~~~~D~~~~~~hK~l~~p-~g~G~~~~~~~~~~~~~~~~~----~~y~~~~~~~~~~~~s~~~~~~~a~~ 329 (494)
...... .+++ ..|.++++ |.+.++ .++|+++++++ .+ +.+... ..+.. ..+ .+.++....+..
T Consensus 271 g~~~~~~~~~~-~pdi~t~s--K~l~gG~~~lg~v~~~~~-i~-~~~~~~~~~~~~~~~----~~t--~~~~~~~~aaa~ 339 (460)
T 3gju_A 271 GTMFGSDHYGI-KPDLITIA--KGLTSAYAPLSGVIVADR-VW-QVLVQGSDKLGSLGH----GWT--YSAHPICVAAGV 339 (460)
T ss_dssp SSSCHHHHHTC-CCSEEEEC--GGGTTTSSCCEEEEEEHH-HH-HHHHHHHHHHCSCSC----CCT--TTTCHHHHHHHH
T ss_pred cccchHhhcCC-CCCeeeee--hhhcCCCCCeEEEEECHH-HH-HHHhccccccccccc----CCC--CCCCHHHHHHHH
Confidence 111111 1122 35777654 987666 58898887653 21 222100 01110 011 122234444555
Q ss_pred HHHHHhcHhHH-HHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccEEEEEecCCCC---------CCHHHHHHHHHhcC
Q 011057 330 YQLIRLGFEGY-RNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKR---------HDEFEVAELLRRFG 399 (494)
Q Consensus 330 ~al~~l~~~g~-~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~---------~~~~~l~~~L~~~G 399 (494)
++|+.+..+.+ ++..+....+++.|.+.+.+.+.+..+.. ...++.+.+..... ....++.+.|.++|
T Consensus 340 aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 417 (460)
T 3gju_A 340 ANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRG--DGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASG 417 (460)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEE--ETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEee--eeEEEEEEEccCccccccccchHHHHHHHHHHHHHCC
Confidence 56665544432 23333333344455555556664444433 34577777643210 01567899999999
Q ss_pred ceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHHh
Q 011057 400 WIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELD 445 (494)
Q Consensus 400 i~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~ 445 (494)
+++.... ...++|++....+|+++++++++.|+++++++.
T Consensus 418 v~v~~~~------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 457 (460)
T 3gju_A 418 VIGRAMP------QGDILGFAPPLCLTREQADIVVSKTADAVKSVF 457 (460)
T ss_dssp EECEECS------SSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEecCC------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9865421 236799998888899999999999999988764
No 198
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.87 E-value=1.6e-19 Score=185.03 Aligned_cols=355 Identities=12% Similarity=-0.001 Sum_probs=206.7
Q ss_pred cCCCCCcccccc----cCCChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhH
Q 011057 53 DGNPRLNLASFV----TTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSE 128 (494)
Q Consensus 53 ~~~~~~~~~~~~----~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~ 128 (494)
+|+.++.+.++. ..+.+|.+.+++.+.++.... .......+...+++++|+++++.+. . +++|+||++
T Consensus 47 ~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~--~~~~~~~~~~~~la~~l~~~~~~~~-----~-v~~~~ggse 118 (452)
T 3n5m_A 47 QGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSY--FPMSQSHEPAIKLAEKLNEWLGGEY-----V-IFFSNSGSE 118 (452)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCC--CCTTSEEHHHHHHHHHHHHHHTSCE-----E-EEEESSHHH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCC--cccccCCHHHHHHHHHHHHhCCCCc-----e-EEEeCchHH
Confidence 445555554441 123468899999888876433 1222345666778899999998754 3 899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCc-chHHHHHHHHcCC------------eeEEEeccCC---------
Q 011057 129 AIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANV-QVCWEKFARYFEV------------ELKEVKLSEG--------- 186 (494)
Q Consensus 129 a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~-h~s~~~~~~~~G~------------~v~~v~~~~~--------- 186 (494)
|+..++++++..+.. .|. ..+++|++.+++ |.....+....|. ++..++....
T Consensus 119 A~~~al~~~~~~~~~----~g~-~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (452)
T 3n5m_A 119 ANETAFKIARQYYAQ----KGE-PHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERE 193 (452)
T ss_dssp HHHHHHHHHHHHHHT----TTC-TTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTS
T ss_pred HHHHHHHHHHHHHHh----cCC-CCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCch
Confidence 999999988753211 111 023566665544 4433333332222 2334443110
Q ss_pred --ccccCHHHHHHhhh----hCCeEEEEeeC-CCCcccccC----HHHHHHHHHHhhcccCCCceEEEeccccccccccc
Q 011057 187 --YYVMDPVKAVEMVD----ENTICVAAILG-STLNGEFED----VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFL 255 (494)
Q Consensus 187 --~~~~d~~~L~~~i~----~~t~~vv~~~~-~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~ 255 (494)
....++++|+++++ +++++|++..+ +| +|.+.| +++|.++|++| |+++|+|++|.++.. .
T Consensus 194 ~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~------~~llI~DEv~~g~g~--~ 264 (452)
T 3n5m_A 194 NIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKH------GALLISDEVICGFGR--T 264 (452)
T ss_dssp CGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--T
T ss_pred hhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHc------CCEEEEecchhCCCc--c
Confidence 00111899999997 44556666555 68 998876 99999999999 999999999986421 1
Q ss_pred CCcccccccCCCceEEEEcCcccCCcC-CceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHH
Q 011057 256 YPELEWDFRLPLVKSINVSGHKYGLVY-AGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIR 334 (494)
Q Consensus 256 ~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~ 334 (494)
......+......|.++++ |.+.++ .++|+++.+++ .. +.+... ..........+ .+.++....+..++++.
T Consensus 265 g~~~~~~~~~~~~di~t~s--K~l~~G~~~ig~~~~~~~-i~-~~~~~~-~~~~~~~~~~t--~~~~~~~~aaa~aal~~ 337 (452)
T 3n5m_A 265 GKAFGFMNYDVKPDIITMA--KGITSAYLPLSATAVKRE-IY-EAFKGK-GEYEFFRHINT--FGGNPAACALALKNLEI 337 (452)
T ss_dssp SSSSGGGGTTCCCSEEEEC--GGGGTTSSCCEEEEEEHH-HH-GGGCSS-STTCSCCCCCS--STTCHHHHHHHHHHHHH
T ss_pred cccchhhhcCCCCCEEeec--ccccCCCcceEEEEECHH-HH-HHHhhc-cCCCCccccCC--CCCCHHHHHHHHHHHHH
Confidence 1111111111136777654 877666 78899887653 22 221110 00000000011 12223344444455555
Q ss_pred hcHhHHHHHHHHHHHHHHHHHHHHhh----CCCeEEeecCCCccEEEEEecCCCC----C---CHHHHHHHHHhcCceee
Q 011057 335 LGFEGYRNVMENCHENAMVLKEGLEK----TGRFNIVSKDEGVPLVAFSLKDNKR----H---DEFEVAELLRRFGWIVP 403 (494)
Q Consensus 335 l~~~g~~~~~~~~~~~a~~l~~~L~~----~~~~~~~~~~~~~~~v~f~~~~~~~----~---~~~~l~~~L~~~Gi~v~ 403 (494)
+..+ +..++..++.+++++.|++ ++.+..+.. ...++.+.+..... . ...++.+.|.++|+++.
T Consensus 338 ~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~ 412 (452)
T 3n5m_A 338 IENE---NLIERSAQMGSLLLEQLKEEIGEHPLVGDIRG--KGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIG 412 (452)
T ss_dssp HHHT---THHHHHHHHHHHHHHHHHHHHTTCTTEEEEEE--SSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECE
T ss_pred HHhc---cHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEE--EEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEe
Confidence 4443 3455556666666666654 343443333 33455555521100 1 13478899999999986
Q ss_pred ccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHH
Q 011057 404 AYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLH 442 (494)
Q Consensus 404 ~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~ 442 (494)
....+. .....++|++.+..+|+++++++++.|+++++
T Consensus 413 ~~~~~~-~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 450 (452)
T 3n5m_A 413 RNGMTT-AGYNNILTLAPPLVISSEEIAFVIGTLKTAME 450 (452)
T ss_dssp ECTTSS-TTCCCEEEECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred ecCccc-CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 544332 23357899998888899999999999988765
No 199
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.86 E-value=1.8e-20 Score=193.04 Aligned_cols=342 Identities=13% Similarity=0.044 Sum_probs=202.0
Q ss_pred HHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcC
Q 011057 70 PECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEG 149 (494)
Q Consensus 70 p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g 149 (494)
|.+.+++.+++......|...++..+ +++++++++|.+. +++|+|||+|+.+++.+++...... .|
T Consensus 53 ~~v~~a~~~~l~~~~~~y~~~~~~~~----l~~~la~~~~~~~-------v~~t~~gt~A~~~al~~~~~~~~~~---~G 118 (467)
T 2oqx_A 53 GAVTQSMQAAMMRGDEAYSGSRSYYA----LAESVKNIFGYQY-------TIPTHQGRGAEQIYIPVLIKKREQE---KG 118 (467)
T ss_dssp SCCCHHHHHHTTSCCCCSSSCHHHHH----HHHHHHHHHCCSE-------EEEEC--CCSHHHHHHHHHHHHHHH---HC
T ss_pred HHHHHHHHHHhccCcceeccCchhHH----HHHHHHHHhCcCc-------EEEcCCcHHHHHHHHHHHhcccccc---CC
Confidence 66777777777543334555555444 4566888888753 8999999999999998886531110 12
Q ss_pred CCCCC-CeEEeCCCcchH-HHHHHHHcCCeeEEE------ecc---CCccccCHHHHHHhhhh----CCeEEEEeeCCCC
Q 011057 150 KPFDK-PNIVTGANVQVC-WEKFARYFEVELKEV------KLS---EGYYVMDPVKAVEMVDE----NTICVAAILGSTL 214 (494)
Q Consensus 150 ~~~~~-~~vi~~~~~h~s-~~~~~~~~G~~v~~v------~~~---~~~~~~d~~~L~~~i~~----~t~~vv~~~~~~~ 214 (494)
. .+ ++|+++ ..|+. +.......|..+... +.+ +.++.+|+++|++++++ ++++|+++.++|+
T Consensus 119 ~--~~~d~Ii~~-~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~ 195 (467)
T 2oqx_A 119 L--DRSKMVAFS-NYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNS 195 (467)
T ss_dssp C--CTTTCEEEE-SSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCG
T ss_pred C--CccceEEec-ccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccC
Confidence 1 11 357666 56743 444445556665433 111 12357899999999984 7899999999999
Q ss_pred c-ccc---cCHHHHHHHHHHhhcccCCCceEEEeccccc-cccc------ccCCccccccc---CCCceEEEEcCcccCC
Q 011057 215 N-GEF---EDVKLLNDLLAEKNKETGWDTPIHVDAASGG-FIAP------FLYPELEWDFR---LPLVKSINVSGHKYGL 280 (494)
Q Consensus 215 t-G~~---~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~-~~~~------~~~~~~~~~~~---~~~~D~~~~~~hK~l~ 280 (494)
+ |.+ +++++|.++|++| |+++|+|++++. +... ...+.....+. ...+|++++++||+++
T Consensus 196 ~gG~~~~~~~l~~i~~la~~~------gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g 269 (467)
T 2oqx_A 196 AGGQPVSLANLKAMYSIAKKY------DIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAM 269 (467)
T ss_dssp GGCBCCCHHHHHHHHHHHHHT------TCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTC
T ss_pred CCCccCCHHHHHHHHHHHHHc------CCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccC
Confidence 8 765 5688999999999 999999988765 2110 00110000111 1247888999999987
Q ss_pred cCCceEEEEEeCC---CCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHH
Q 011057 281 VYAGIGWVIWRNK---EDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEG 357 (494)
Q Consensus 281 ~p~g~G~~~~~~~---~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~ 357 (494)
.|.| |+++.+++ ..+ ..+.....+..+. .. .+......+.++..++...-. ++..++..++++++.+.
T Consensus 270 ~~~G-g~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~---~~~~~~~~~~al~~~l~~~~~---~~~~~~~~~~~~~l~~~ 340 (467)
T 2oqx_A 270 VPMG-GLLCMKDDSFFDVY-TECRTLCVVQEGF-PT---YGGLEGGAMERLAVGLYDGMN---LDWLAYRIAQVQYLVDG 340 (467)
T ss_dssp CSSC-EEEEECSGGGHHHH-HHHHHHHHHTTSS-CC---CCCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred CCCc-eEEEecChhHHHHH-HHHHHhhhccCCc-cc---ccchhhhHHHHHHHhhHhhhh---HHHHHHHHHHHHHHHHH
Confidence 6655 56555443 111 1111000011111 01 012222222222122221110 13445566788899999
Q ss_pred HhhCCCeEEeecCCCccEEEEEecCC-CCCC-----HHHHHHHH-HhcCceeecccc------CC----CCCCceEEEEE
Q 011057 358 LEKTGRFNIVSKDEGVPLVAFSLKDN-KRHD-----EFEVAELL-RRFGWIVPAYTM------PA----DAQHITVLRVV 420 (494)
Q Consensus 358 L~~~~~~~~~~~~~~~~~v~f~~~~~-~~~~-----~~~l~~~L-~~~Gi~v~~~~~------~~----~~~~~~~lRvs 420 (494)
|+++ ++++. +. ...++.+.+... .+.+ ...+.++| .++|+.+..... |. ...+..++|++
T Consensus 341 L~~~-~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~ 417 (467)
T 2oqx_A 341 LEEI-GVVCQ-QA-GGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLT 417 (467)
T ss_dssp HHHT-TCCEE-EE-CSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEC
T ss_pred HHHC-CCeee-cC-CceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEE
Confidence 9988 57776 43 455666666310 0122 45668888 899998753211 10 01123689999
Q ss_pred eccC-CChHHHHHHHHHHHHHHHHHhc
Q 011057 421 IRED-FSRTLAERLVLDITKVLHELDS 446 (494)
Q Consensus 421 ~~~~-~t~~~id~~i~~l~~~~~~l~~ 446 (494)
+... ++.++++++++.|+++++.+++
T Consensus 418 ~~~~~~t~e~i~~~~~~l~~~l~~~~~ 444 (467)
T 2oqx_A 418 IPRATYTQTHMDFIIEAFKHVKENAAN 444 (467)
T ss_dssp CCTTTSCHHHHHHHHHHHHHHHHSGGG
T ss_pred ecCCCCCHHHHHHHHHHHHHHHhhhhh
Confidence 9887 8999999999999998876544
No 200
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.86 E-value=9.2e-20 Score=186.85 Aligned_cols=336 Identities=12% Similarity=-0.034 Sum_probs=209.0
Q ss_pred ChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 011057 68 MEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA 147 (494)
Q Consensus 68 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~ 147 (494)
.+|.+.+++.+.++...... ......+...+++++|+++++.+. ..+++|+||++|+..++++++..+..+
T Consensus 92 ~~p~v~~A~~~~~~~~~~~~-~~~~~~~~~~~L~e~la~~~~~~~-----~~v~~~~sGseA~~~Alk~a~~~~~~~--- 162 (457)
T 3tfu_A 92 GHPALDQALTTQLRVMNHVM-FGGLTHEPAARLAKLLVDITPAGL-----DTVFFSDSGSVSVEVAAKMALQYWRGR--- 162 (457)
T ss_dssp TCHHHHHHHHHHHHHCSCCC-SSSEECHHHHHHHHHHHHHSSTTE-----EEEEEESSHHHHHHHHHHHHHHHHHHT---
T ss_pred CCHHHHHHHHHHHHhccCcc-ccccCCHHHHHHHHHHHHhCCCCc-----CEEEEeCcHHHHHHHHHHHHHHHHHhc---
Confidence 47889999988876632211 111233455578888999997543 359999999999999999987654322
Q ss_pred cCCCCCCCeEEe-CCCcchHHHHHHHH-------------cCCeeEEEeccCC-ccccCHHHHHHhhh---hCCeEEEEe
Q 011057 148 EGKPFDKPNIVT-GANVQVCWEKFARY-------------FEVELKEVKLSEG-YYVMDPVKAVEMVD---ENTICVAAI 209 (494)
Q Consensus 148 ~g~~~~~~~vi~-~~~~h~s~~~~~~~-------------~G~~v~~v~~~~~-~~~~d~~~L~~~i~---~~t~~vv~~ 209 (494)
|. ..+.+|++ ....|.....+... ...++..++.... ....|+++|+++++ +++++|++.
T Consensus 163 -g~-~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~e 240 (457)
T 3tfu_A 163 -GL-PGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVE 240 (457)
T ss_dssp -TC-TTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred -CC-CCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 11 12345665 44445433322222 1223445554322 12358899999998 556677776
Q ss_pred e-CCCCcccccC----HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcC-C
Q 011057 210 L-GSTLNGEFED----VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVY-A 283 (494)
Q Consensus 210 ~-~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~ 283 (494)
. +++++|.+.+ +++|.++|+++ |++|++|++|.++.. .......+..-...|.+++ .|.+.++ .
T Consensus 241 p~~~~~~G~~~~~~~~l~~l~~l~~~~------gillI~DEv~~g~gr--~G~~~a~~~~~~~pdiit~--sK~l~gG~~ 310 (457)
T 3tfu_A 241 PVVQGAGGMRFHDPRYLHDLRDICRRY------EVLLIFDEIATGFGR--TGALFAADHAGVSPDIMCV--GKALTGGYL 310 (457)
T ss_dssp SSEECTTTCEECCTHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSTHHHHTCCCSEEEE--CGGGGTTSS
T ss_pred CCCcCCCCcccCCHHHHHHHHHHHHHc------CCEEEEEcCccCCcc--ccchhHhHhcCCCceEEEE--ChhhhCCCc
Confidence 6 6788998866 99999999999 999999999986421 1111111111124677754 4877665 4
Q ss_pred ceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhC--
Q 011057 284 GIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKT-- 361 (494)
Q Consensus 284 g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~-- 361 (494)
++|+++.+++ .. +.+.... .+......+ ++.+.....+..++|+.+..+ ...++..++.++++++|+++
T Consensus 311 ~lG~v~~~~~-i~-~~~~~~~--~~~~~~~~t--~~~n~~a~aaa~aaL~~~~~~---~~~~~~~~~~~~l~~~L~~l~~ 381 (457)
T 3tfu_A 311 SLAATLCTAD-VA-HTISAGA--AGALMHGPT--FMANPLACAVSVASVELLLGQ---DWRTRITELAAGLTAGLDTARA 381 (457)
T ss_dssp CCEEEEEEHH-HH-HHHHHSS--SCSCCCCCT--TTTCHHHHHHHHHHHHHHHTS---CHHHHHHHHHHHHHHHHGGGGG
T ss_pred ceEEEEEcHH-HH-HHhhccC--CCceeEecC--CCcCHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHhc
Confidence 7899887653 21 2221000 000000011 122234444455556555333 45667778888888888775
Q ss_pred -CCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHH
Q 011057 362 -GRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKV 440 (494)
Q Consensus 362 -~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~ 440 (494)
+.+..+.. ...++.+.+.. ..+..++.++|.++|+.+... ..++|++....+|+++++++++.|+++
T Consensus 382 ~~~v~~vr~--~G~~~~i~l~~--~~~~~~~~~~l~~~Gv~v~~~--------~~~lRi~p~~~~t~eei~~~l~~L~~~ 449 (457)
T 3tfu_A 382 LPAVTDVRV--CGAIGVIECDR--PVDLAVATPAALDRGVWLRPF--------RNLVYAMPPYICTPAEITQITSAMVEV 449 (457)
T ss_dssp STTEEEEEE--CSSCEEEEESS--CCCHHHHHHHHHHTTEECCCB--------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCeeeeec--CCeEEEEEECC--cccHHHHHHHHHHCCeEEEec--------CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 33433322 35677788754 346789999999999986431 247999887788999999999999999
Q ss_pred HHHHh
Q 011057 441 LHELD 445 (494)
Q Consensus 441 ~~~l~ 445 (494)
++++.
T Consensus 450 l~~~~ 454 (457)
T 3tfu_A 450 ARLVG 454 (457)
T ss_dssp HHHC-
T ss_pred HHHhc
Confidence 87654
No 201
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.86 E-value=3e-21 Score=197.75 Aligned_cols=284 Identities=14% Similarity=0.112 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHH----H
Q 011057 96 LQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKF----A 171 (494)
Q Consensus 96 le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~----~ 171 (494)
..+++++++++++|.+. .+++++|++|+..++. ... .+++|+++.+.|.++... +
T Consensus 134 ~~~~l~~~la~~~g~~~-------~i~~~sGt~al~~~l~-~~~-------------~Gd~Vi~~~~~y~~~~~~~~~~~ 192 (464)
T 1ibj_A 134 TRDALESLLAKLDKADR-------AFCFTSGMAALSAVTH-LIK-------------NGEEIVAGDDVYGGSDRLLSQVV 192 (464)
T ss_dssp HHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHT-TSC-------------TTCEEEEESSCCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhCCCe-------EEEECCHHHHHHHHHH-HhC-------------CCCEEEEECCCchhHHHHHHHHH
Confidence 56789999999999853 7788889998875543 211 126899999999887653 5
Q ss_pred HHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEEEeccccccc
Q 011057 172 RYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFI 251 (494)
Q Consensus 172 ~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~ 251 (494)
+..|++++.++++ |+++|++++++++++|++++++||+|.+.|+++|+++|+++ |+++++|++|+.+.
T Consensus 193 ~~~G~~v~~v~~~------d~~~l~~~i~~~tk~v~l~~p~NptG~v~~l~~i~~la~~~------gi~livDea~~~g~ 260 (464)
T 1ibj_A 193 PRSGVVVKRVNTT------KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQ------GALVLVDNSIMSPV 260 (464)
T ss_dssp GGGTCEEEEECTT------SHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTT------TCEEEEECTTTCTT
T ss_pred HHcCCEEEEeCCC------CHHHHHHHhccCceEEEEeCCCCCCCEeecHHHHHHHHHHc------CCEEEEECCCcccc
Confidence 6679999888753 78999999998999999999999999999999999999999 99999999998653
Q ss_pred ccccCCcccccccCCCceEEEEcCcccCCcCCce--EEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHH
Q 011057 252 APFLYPELEWDFRLPLVKSINVSGHKYGLVYAGI--GWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQY 329 (494)
Q Consensus 252 ~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~--G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~ 329 (494)
. ..+ .+ .++|++..++||++.+|.|+ |+++++++... +.+.....+.+. . ...+.++
T Consensus 261 ~--~~~---~~---~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~-~~l~~~~~~~g~---------~---~~~~~~~ 319 (464)
T 1ibj_A 261 L--SRP---LE---LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLA-KEVYFLQNSEGS---------G---LAPFDCW 319 (464)
T ss_dssp T--CCG---GG---TTCSEEEEETTTTTTCSSCCCCEEEEECSHHHH-HHHHHHHHHTTC---------B---CCHHHHH
T ss_pred c--CCh---hh---cCCEEEEECCcccccCCCCCcEEEEEEChHHHH-HHHHHHHHhcCC---------C---CCHHHHH
Confidence 2 111 11 26899999999999887765 98887653322 211111111111 1 1123445
Q ss_pred HHHHHhcHhHHHHHHHHHHHHHHHHHHHH--------------hhCCCeEEeecCC--CccEEEEEecCCCCCC-HHHHH
Q 011057 330 YQLIRLGFEGYRNVMENCHENAMVLKEGL--------------EKTGRFNIVSKDE--GVPLVAFSLKDNKRHD-EFEVA 392 (494)
Q Consensus 330 ~al~~l~~~g~~~~~~~~~~~a~~l~~~L--------------~~~~~~~~~~~~~--~~~~v~f~~~~~~~~~-~~~l~ 392 (494)
++++.+.. +..+.++..+++..+.+.| ++++++++..+.. ..++++|.+.+ .+ ...+.
T Consensus 320 a~~~al~~--~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~---~~~~~~~~ 394 (464)
T 1ibj_A 320 LCLRGIKT--MALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGS---VALSKHLV 394 (464)
T ss_dssp HHHHHHTT--HHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSC---HHHHHHHH
T ss_pred HHHhchhh--HHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECC---HHHHHHHH
Confidence 55544421 1222233333333333333 3344444443321 35689998732 12 34577
Q ss_pred HHHHhcCceeeccc------cCC--------------CCCCceEEEEEeccCCChHHHHHHHHHHHHHHH
Q 011057 393 ELLRRFGWIVPAYT------MPA--------------DAQHITVLRVVIREDFSRTLAERLVLDITKVLH 442 (494)
Q Consensus 393 ~~L~~~Gi~v~~~~------~~~--------------~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~ 442 (494)
++|...|+.++... .|. ...+..++|++++. +++++++++|+++++
T Consensus 395 ~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~----edi~~li~~L~~al~ 460 (464)
T 1ibj_A 395 ETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFK 460 (464)
T ss_dssp HHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHHH
T ss_pred HhcCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC----CCHHHHHHHHHHHHh
Confidence 77776777654321 110 00114579999984 789999999998875
No 202
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.86 E-value=6e-19 Score=181.50 Aligned_cols=349 Identities=15% Similarity=0.060 Sum_probs=211.9
Q ss_pred cCCCCCcccccc----cCCChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhH
Q 011057 53 DGNPRLNLASFV----TTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSE 128 (494)
Q Consensus 53 ~~~~~~~~~~~~----~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~ 128 (494)
+|+.++.+.++. -.+.+|.+.+++.+.++.....+.......+...++.++|+++++.+. ..+++++||+|
T Consensus 53 ~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~-----~~v~~~~sGse 127 (472)
T 3hmu_A 53 EGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKTTHVPAIALAQKLAELAPGDL-----NHVFFAGGGSE 127 (472)
T ss_dssp TCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCSSSSEECHHHHHHHHHHHHHSCTTE-----EEEEEESSHHH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCC-----CEEEEeCCHHH
Confidence 455555555531 223478899999888876443232223344566678888999986543 35999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEe-CCCcchHHHHHHHHcCC-----------eeEEEeccCCccc----cC-
Q 011057 129 AIMLAGLAFKRKWQNKRKAEGKPFDKPNIVT-GANVQVCWEKFARYFEV-----------ELKEVKLSEGYYV----MD- 191 (494)
Q Consensus 129 a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~-~~~~h~s~~~~~~~~G~-----------~v~~v~~~~~~~~----~d- 191 (494)
|+..++++++..+.. .|.+ .+.+||+ ....|.....+....|. .+..++.... +. .|
T Consensus 128 A~~~aik~a~~~~~~----~g~~-~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~-~~~~~~~~~ 201 (472)
T 3hmu_A 128 ANDTNIRMVRTYWQN----KGQP-EKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNW-WAEGGDMDP 201 (472)
T ss_dssp HHHHHHHHHHHHHHH----TTCT-TCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCH-HHHCTTCCH
T ss_pred HHHHHHHHHHHHHHh----cCCC-CCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCcc-ccCCcccCH
Confidence 999999998764322 1211 1345655 44455443333332221 3555654320 11 23
Q ss_pred -------HHHHHHhhh----hCCeEEEEeeCCCCcccccC----HHHHHHHHHHhhcccCCCceEEEecccccccccccC
Q 011057 192 -------PVKAVEMVD----ENTICVAAILGSTLNGEFED----VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLY 256 (494)
Q Consensus 192 -------~~~L~~~i~----~~t~~vv~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~ 256 (494)
+++|+++++ +++++|++...++++|.+.| +++|.++|+++ |++|++|++|.++.. ..
T Consensus 202 ~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~------gillI~DEv~~gfgr--~G 273 (472)
T 3hmu_A 202 EEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKY------DILLIADEVICGFGR--TG 273 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TS
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHc------CCEEEEEccccCCcc--cC
Confidence 788888886 34555655555667788877 99999999999 999999999986521 11
Q ss_pred Ccccc-cccCCCceEEEEcCcccCCcC-CceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHH
Q 011057 257 PELEW-DFRLPLVKSINVSGHKYGLVY-AGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIR 334 (494)
Q Consensus 257 ~~~~~-~~~~~~~D~~~~~~hK~l~~p-~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~ 334 (494)
..... .+++ ..|.++++ |.+.++ ..+|+++++++ .. +.+. ...+ ....+ ++.++....+..++|+.
T Consensus 274 ~~~a~~~~~v-~pdi~t~s--K~l~gg~~plG~v~~~~~-i~-~~~~--~~~~---~~~~t--~~~np~a~aAa~aaL~~ 341 (472)
T 3hmu_A 274 NWFGTQTMGI-RPHIMTIA--KGLSSGYAPIGGSIVCDE-VA-HVIG--KDEF---NHGYT--YSGHPVAAAVALENLRI 341 (472)
T ss_dssp SSCHHHHHTC-CCSEEEEC--GGGTTTSSCCEEEEEEHH-HH-HHHT--TSCB---CCCCT--TTTCHHHHHHHHHHHHH
T ss_pred ccchhHHhCC-CCceeeec--hhhhcCCcceEEEEECHH-HH-Hhcc--cCCc---cccCC--CCCCHHHHHHHHHHHHH
Confidence 11111 1122 46777654 887655 67898887643 22 2221 0000 00111 12223344445555555
Q ss_pred hcHhHHHHHHHHHH-HHHHHHHHHHhhC---CCeEEeecCCCccEEEEEecCCCC----------CCHHHHHHHHHhcCc
Q 011057 335 LGFEGYRNVMENCH-ENAMVLKEGLEKT---GRFNIVSKDEGVPLVAFSLKDNKR----------HDEFEVAELLRRFGW 400 (494)
Q Consensus 335 l~~~g~~~~~~~~~-~~a~~l~~~L~~~---~~~~~~~~~~~~~~v~f~~~~~~~----------~~~~~l~~~L~~~Gi 400 (494)
+..+ +..++.. ++.+++++.|+++ +.+..+.. ...++.+.+..... .....+.+.|.++|+
T Consensus 342 ~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~--~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv 416 (472)
T 3hmu_A 342 LEEE---NILDHVRNVAAPYLKEKWEALTDHPLVGEAKI--VGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNL 416 (472)
T ss_dssp HHHT---THHHHHHHTHHHHHHHHHHGGGGSTTEEEEEE--ETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTB
T ss_pred HHHh---HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe--cCceEEEEEecCccccccccchhHHHHHHHHHHHHHCCc
Confidence 5443 4556666 6777777777665 33433332 34677777743210 015678899999999
Q ss_pred eeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHHh
Q 011057 401 IVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELD 445 (494)
Q Consensus 401 ~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~ 445 (494)
++... + .++|++....+|+++++++++.|+++++++.
T Consensus 417 ~v~~~-------g-~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~ 453 (472)
T 3hmu_A 417 IMRHV-------G-DRMIISPPLVITPAEIDEMFVRIRKSLDEAQ 453 (472)
T ss_dssp CCEEE-------T-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEec-------C-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 87542 2 5799998888899999999999999988765
No 203
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.86 E-value=2.2e-20 Score=188.96 Aligned_cols=350 Identities=15% Similarity=0.073 Sum_probs=209.4
Q ss_pred HHHHHHHHhhhhcCCCCCccccccc-CC-ChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCc
Q 011057 41 AAYQIINDELMLDGNPRLNLASFVT-TW-MEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETA 118 (494)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~ 118 (494)
.++..............++|+.+.+ .. .+|.+.+++.++.......|...++..++++.+.+++ .|......+..
T Consensus 27 ~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~a~~~a~~~~~~~y~~~~g~~~lr~~ia~~~---~~~~~~~~~~~ 103 (409)
T 4eu1_A 27 PILGLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQATLGTNMDYAPVTGIASFVEEAQKLC---FGPTCAALRDG 103 (409)
T ss_dssp CHHHHHHHHHHCCCSSCEECCCSSCCCTTSCCCCCHHHHTCCCCSCCCCCCTTCCHHHHHHHHHHH---HCSSCHHHHTT
T ss_pred hHHHHHHHHhhCCCcCceeeeeeEEECCCCCEeecHHHHhcCccccccCCCCCCcHHHHHHHHHHH---cCCCchhhccC
Confidence 3454444433223334467777664 32 3344556666554333345555567777777755555 35541000001
Q ss_pred ce--eeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEecc-CCccccCHHHH
Q 011057 119 VG--VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLS-EGYYVMDPVKA 195 (494)
Q Consensus 119 ~~--~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~-~~~~~~d~~~L 195 (494)
.+ ..|.||++++..+...++. ....+++|+++.++|..+...++..|++++.++++ ++++.+|+++|
T Consensus 104 ~i~~~~~~~g~ga~~~~~~~~~~----------~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l 173 (409)
T 4eu1_A 104 RIASCQTLGGTGALRIGGDLLNR----------FVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGM 173 (409)
T ss_dssp CEEEEEESHHHHHHHHHHHHGGG----------TSSSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECHHHH
T ss_pred ceeeeecccchHHHHHHHHHHHH----------hcCCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcHHHH
Confidence 23 4588999998866544321 01113689999999999999999999999999984 34578999999
Q ss_pred HHhhhh---CCeEEEEeeCCCCcccccC---HHHHHHHHHHhhcccCCCceEEEeccccccccccc---CCcccccccCC
Q 011057 196 VEMVDE---NTICVAAILGSTLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFL---YPELEWDFRLP 266 (494)
Q Consensus 196 ~~~i~~---~t~~vv~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~---~~~~~~~~~~~ 266 (494)
++++++ .++++++++++||||.+.+ +++|+++|+++ ++++++|++|+.+...-. ...........
T Consensus 174 ~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~------~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~ 247 (409)
T 4eu1_A 174 LECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRR------NHIPFVDMAYQGFATGQLDYDAFVPRHLVDMV 247 (409)
T ss_dssp HHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEEESCTTTTTSCHHHHTHHHHHHHTTS
T ss_pred HHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhC------CcEEEEeccccccccCCcccchHHHHHHHhhC
Confidence 999963 4566677899999999976 55599999999 999999999987542100 00000000111
Q ss_pred CceEEEEcCcccCC-cCCceEEE--EEeCCCC---cccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhc----
Q 011057 267 LVKSINVSGHKYGL-VYAGIGWV--IWRNKED---LPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG---- 336 (494)
Q Consensus 267 ~~D~~~~~~hK~l~-~p~g~G~~--~~~~~~~---~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~---- 336 (494)
.-.++..+++|.++ ++.++|++ ++.++.. +...+...... ...+.+ .++++++...+.
T Consensus 248 ~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~---------~~~~~~---~~~~~~~~~~l~~~~~ 315 (409)
T 4eu1_A 248 PNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRP---------MYNNPP---LYGAWVVSSILKDPQL 315 (409)
T ss_dssp SCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHH---------HHSSCC---HHHHHHHHHHHHCHHH
T ss_pred CcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhh---------hcCCCC---hHHHHHHHHHhCCHHH
Confidence 22345567889774 66778997 5555431 11111100000 001111 222333333332
Q ss_pred ----HhHHHHHHHHHHHHHHHHHHHHhhCCC---eEEeecCCCccEEEEEecCCCCCCHHHHHHHHH-hcCceeeccccC
Q 011057 337 ----FEGYRNVMENCHENAMVLKEGLEKTGR---FNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLR-RFGWIVPAYTMP 408 (494)
Q Consensus 337 ----~~g~~~~~~~~~~~a~~l~~~L~~~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~-~~Gi~v~~~~~~ 408 (494)
.+.+++..+++.++++++.+.|++++. +++..+ ..+++.|. +.+. ++.++|. ++|+.+..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~--~~~~~~~~-----~~~~-~~~~~ll~~~gv~v~p---- 383 (409)
T 4eu1_A 316 TALWKKELKQMSSRIAEVRKRLVSELKACGSVHDWSHIER--QVGMMAYT-----GLTR-EQVELLRSEYHIYMTL---- 383 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHH--SCSSEEEC-----CCCH-HHHHHHHHHHCEECCT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecC--CceEEEEe-----CCCH-HHHHHHHHcCCEEEcC----
Confidence 234567788888999999999998752 444433 34555542 1234 4455554 67997532
Q ss_pred CCCCCceEEEEEeccCCChHHHHHHHHHHHHHH
Q 011057 409 ADAQHITVLRVVIREDFSRTLAERLVLDITKVL 441 (494)
Q Consensus 409 ~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~ 441 (494)
+ .|++++. .+.++++++++.|++++
T Consensus 384 ----~---~Ri~~~~-~~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 384 ----N---GRAAVSG-LNSTNVEYVSQAIHNVT 408 (409)
T ss_dssp ----T---CEEEGGG-CCTTTHHHHHHHHHHHH
T ss_pred ----C---CEEEEEe-cCHhhHHHHHHHHHHHh
Confidence 1 4888864 46677999999988765
No 204
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.85 E-value=4.8e-19 Score=181.86 Aligned_cols=352 Identities=13% Similarity=0.034 Sum_probs=207.0
Q ss_pred cCCCCCcccccc----cCCChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhH
Q 011057 53 DGNPRLNLASFV----TTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSE 128 (494)
Q Consensus 53 ~~~~~~~~~~~~----~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~ 128 (494)
+|+.++.+.++. -.+.+|.+.+++.+.++.....+.......+...+++++|+++++.+. ..+++|+||++
T Consensus 48 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~-----~~v~~~~ggse 122 (459)
T 4a6r_A 48 EGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTPAGF-----DRVFYTNSGSE 122 (459)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSCTTC-----CEEEEESSHHH
T ss_pred CCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCC-----CEEEEeCchHH
Confidence 455555555531 123468899999888876443333223345566778899999987654 35999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCC-cchHHHHHHHHcC------------CeeEEEeccC----CccccC
Q 011057 129 AIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGAN-VQVCWEKFARYFE------------VELKEVKLSE----GYYVMD 191 (494)
Q Consensus 129 a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~-~h~s~~~~~~~~G------------~~v~~v~~~~----~~~~~d 191 (494)
|+..++++++..+.. .|. ..+++|++..+ .|.....+....| .++..++... +.+ +|
T Consensus 123 A~~~al~~~~~~~~~----~g~-~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d 196 (459)
T 4a6r_A 123 SVDTMIRMVRRYWDV----QGK-PEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MT 196 (459)
T ss_dssp HHHHHHHHHHHHHHH----TTC-TTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CC
T ss_pred HHHHHHHHHHHHHHh----cCC-CCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cC
Confidence 999999998765422 121 12346665444 4543333322222 1344555322 111 34
Q ss_pred --------HHHHHHhhhh----CCeEEEEeeCCCCcccccC----HHHHHHHHHHhhcccCCCceEEEeccccccccccc
Q 011057 192 --------PVKAVEMVDE----NTICVAAILGSTLNGEFED----VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFL 255 (494)
Q Consensus 192 --------~~~L~~~i~~----~t~~vv~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~ 255 (494)
+++|++++.+ ++++|++...++++|.+.+ +++|.++|++| |+++++|++|.++.. .
T Consensus 197 ~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~------~~llI~DEv~~g~gr--~ 268 (459)
T 4a6r_A 197 PDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKY------DVLLVADEVICGFGR--T 268 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--T
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHc------CCEEEEeccccCCCc--c
Confidence 7889988863 3445555444456677776 99999999999 999999999986421 1
Q ss_pred CCcccccccCCCceEEEEcCcccCCcC-CceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHH
Q 011057 256 YPELEWDFRLPLVKSINVSGHKYGLVY-AGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIR 334 (494)
Q Consensus 256 ~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~ 334 (494)
.............|.++++ |.+.++ .++|+++.+++ .. +.+.....+. ....++.++....+..++|+.
T Consensus 269 G~~~~~~~~~~~pdi~t~s--K~l~gg~~~lg~v~~~~~-i~-~~~~~~~~~~------~~~t~~~~~~~~aaa~aal~~ 338 (459)
T 4a6r_A 269 GEWFGHQHFGFQPDLFTAA--KGLSSGYLPIGAVFVGKR-VA-EGLIAGGDFN------HGFTYSGHPVCAAVAHANVAA 338 (459)
T ss_dssp SSSSHHHHHTCCCSEEEEC--GGGGTTSSCCEEEEECHH-HH-HHHHHHCTTH------HHHHHCSCHHHHHHHHHHHHH
T ss_pred cccchHhhcCCCCCeeehh--hhhcCCCCCccceeeCHH-HH-HHhhcCCCcc------cCCCCCCCHHHHHHHHHHHHH
Confidence 1111111111235777654 877655 68898887542 22 2111000000 000112223344444555555
Q ss_pred hcHhHHHHHHHHHH-HHHHHHHHHH----hhCCCeEEeecCCCccEEEEEecCCCC---------CCHHHHHHHHHhcCc
Q 011057 335 LGFEGYRNVMENCH-ENAMVLKEGL----EKTGRFNIVSKDEGVPLVAFSLKDNKR---------HDEFEVAELLRRFGW 400 (494)
Q Consensus 335 l~~~g~~~~~~~~~-~~a~~l~~~L----~~~~~~~~~~~~~~~~~v~f~~~~~~~---------~~~~~l~~~L~~~Gi 400 (494)
+..+. ..++.. ++.+++++.| .+.+.+..+.. ...++.+.+..... .....+.+.|.++|+
T Consensus 339 ~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv 413 (459)
T 4a6r_A 339 LRDEG---IVQRVKDDIGPYMQKRWRETFSRFEHVDDVRG--VGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNL 413 (459)
T ss_dssp HHHTC---HHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEE--ETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTE
T ss_pred Hhcch---HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEE--EEEEEEEEEecCccccccccchHHHHHHHHHHHHHCCe
Confidence 44433 344444 4445555554 44454444433 34677777643210 015678999999999
Q ss_pred eeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHHhc
Q 011057 401 IVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDS 446 (494)
Q Consensus 401 ~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~~ 446 (494)
++... + .++|++....+|+++++++++.|+++++++.+
T Consensus 414 ~v~~~-------g-~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 451 (459)
T 4a6r_A 414 IMRAC-------G-DHIVSAPPLVMTRAEVDEMLAVAERCLEEFEQ 451 (459)
T ss_dssp ECEEE-------T-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecC-------C-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 87542 2 57999988888999999999999999887653
No 205
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.85 E-value=1.4e-20 Score=189.27 Aligned_cols=289 Identities=17% Similarity=0.076 Sum_probs=185.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHH----HHH
Q 011057 97 QNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEK----FAR 172 (494)
Q Consensus 97 e~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~----~~~ 172 (494)
..++++.+++++|.+. .+++++|++|+.+++. +.+ .+++|+++.+.|.+... .++
T Consensus 57 ~~~lr~~la~~~g~~~-------~i~~~sGt~a~~~al~-~~~-------------~gd~Vi~~~~~y~~~~~~~~~~~~ 115 (393)
T 1n8p_A 57 RENLERAVAALENAQY-------GLAFSSGSATTATILQ-SLP-------------QGSHAVSIGDVYGGTHRYFTKVAN 115 (393)
T ss_dssp HHHHHHHHHHHTTCSE-------EEEESCHHHHHHHHHH-TSC-------------SSCEEEEESSCCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHhCCCc-------EEEECChHHHHHHHHH-HcC-------------CCCEEEEeCCCchHHHHHHHHHHH
Confidence 4457778999999863 6677777999998877 421 12589998898874443 456
Q ss_pred HcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEEEecccccccc
Q 011057 173 YFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIA 252 (494)
Q Consensus 173 ~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~ 252 (494)
..|++++.++++ | ++|+++++++|++|++++++|++|.+.|+++|.++|++++. ..++++|+|++|+.+..
T Consensus 116 ~~G~~v~~v~~~------d-~~l~~~i~~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~--~~~~~livD~a~~~~~~ 186 (393)
T 1n8p_A 116 AHGVETSFTNDL------L-NDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAA--GQDVILVVDNTFLSPYI 186 (393)
T ss_dssp TTCSCCEEESSH------H-HHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTT--TTTCEEEEECTTTHHHH
T ss_pred HcCcEEEEeCCC------h-HHHHHhcccCceEEEEECCCCCcceecCHHHHHHHHHHhCC--CCCCEEEEeCCcccccc
Confidence 679999998853 6 89999998889999999999999999999999999999821 11799999999987643
Q ss_pred cccCCcccccccCCCceEEEEcCcccCCcCCc--e-EEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHH
Q 011057 253 PFLYPELEWDFRLPLVKSINVSGHKYGLVYAG--I-GWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQY 329 (494)
Q Consensus 253 ~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~-G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~ 329 (494)
. .. .. .++|+++.++||++++ .| + |+++++++..+ +.+.......+ .+.+ ....+
T Consensus 187 --~-~~--~~---~~~di~~~S~sK~~g~-~G~rigG~~~~~~~~~~-~~l~~~~~~~g---------~~~~---~~~~~ 244 (393)
T 1n8p_A 187 --S-NP--LN---FGADIVVHSATKYING-HSDVVLGVLATNNKPLY-ERLQFLQNAIG---------AIPS---PFDAW 244 (393)
T ss_dssp --C-CG--GG---GTCSEEEEETTTTTTC-SSCCCCEEEEESCHHHH-HHHHHHHHHHC---------CCCC---HHHHH
T ss_pred --C-CH--HH---cCCeEEEEECcccccC-CCCceeEEEEeCCHHHH-HHHHHHHHhcC---------CCCC---HHHHH
Confidence 1 11 11 1689999999999854 44 6 77776543322 11111000010 1111 12223
Q ss_pred HHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCC-eEEe-ecC---------------C-C-ccEEEEEecCCCCCCHHH
Q 011057 330 YQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGR-FNIV-SKD---------------E-G-VPLVAFSLKDNKRHDEFE 390 (494)
Q Consensus 330 ~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~-~~~~-~~~---------------~-~-~~~v~f~~~~~~~~~~~~ 390 (494)
.++..+ +.+..+.++..+++.++.+.|++.+. +.-+ .+. . . .++++|.+++. ..+...
T Consensus 245 ~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~-~~~~~~ 321 (393)
T 1n8p_A 245 LTHRGL--KTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGG-AEAASK 321 (393)
T ss_dssp HHHHHH--TTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSC-HHHHHH
T ss_pred HHHhcc--chHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCc-HHHHHH
Confidence 333322 23456677777888889999988765 4422 221 0 2 56899998541 123445
Q ss_pred HHHHHHhcCceeecc------ccCCCC--------------CCceEEEEEeccCCChHHHHHHHHHHHHH
Q 011057 391 VAELLRRFGWIVPAY------TMPADA--------------QHITVLRVVIREDFSRTLAERLVLDITKV 440 (494)
Q Consensus 391 l~~~L~~~Gi~v~~~------~~~~~~--------------~~~~~lRvs~~~~~t~~~id~~i~~l~~~ 440 (494)
+.+.|...++.++.. ..|... .....+|+|++...++++++.+.++|+++
T Consensus 322 ~l~~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 322 FASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp HHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHhhCCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 555554434333211 111111 11468999999888888777776666543
No 206
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.85 E-value=3.3e-19 Score=183.70 Aligned_cols=355 Identities=13% Similarity=-0.014 Sum_probs=213.6
Q ss_pred cCCCCCcccccc----cCCChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhH
Q 011057 53 DGNPRLNLASFV----TTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSE 128 (494)
Q Consensus 53 ~~~~~~~~~~~~----~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~ 128 (494)
+|+.++.+.++. ..+.+|.+.+++.+.++.....+. +....+...++.++|+++++.+. ..+++++||++
T Consensus 52 ~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-~~~~~~~~~~la~~l~~~~~~~~-----~~v~~~~sGse 125 (476)
T 3i5t_A 52 DGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASP-WYMATSPAARLAEKIATLTPGDL-----NRIFFTTGGST 125 (476)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCT-TTCBCHHHHHHHHHHHTTSSTTC-----CEEEEESSHHH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCccc-CccCCHHHHHHHHHHHhcCCCCc-----CEEEEeCchHH
Confidence 455555554431 223478899999888876433222 12345566778899999986543 35999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEe-CCCcchHHHHHHHHcCC------------eeEEEeccCC--ccccC--
Q 011057 129 AIMLAGLAFKRKWQNKRKAEGKPFDKPNIVT-GANVQVCWEKFARYFEV------------ELKEVKLSEG--YYVMD-- 191 (494)
Q Consensus 129 a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~-~~~~h~s~~~~~~~~G~------------~v~~v~~~~~--~~~~d-- 191 (494)
|+..++++++..+..+ |. ..+.+||+ ....|.....+....|. .+..++.... .+..|
T Consensus 126 A~~~Aik~a~~~~~~~----g~-~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 200 (476)
T 3i5t_A 126 AVDSALRFSEFYNNVL----GR-PQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQE 200 (476)
T ss_dssp HHHHHHHHHHHHHHHT----TC-TTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHH
T ss_pred HHHHHHHHHHHHHHhc----CC-CCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchH
Confidence 9999999997754321 21 12345655 44455544444333232 2344443210 00122
Q ss_pred ------HHHHHHhhh----hCCeEEEEeeCCCCcccccC----HHHHHHHHHHhhcccCCCceEEEecccccccccccCC
Q 011057 192 ------PVKAVEMVD----ENTICVAAILGSTLNGEFED----VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYP 257 (494)
Q Consensus 192 ------~~~L~~~i~----~~t~~vv~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~ 257 (494)
+++|++++. +++++|++..+++++|.+.+ +++|.++|++| |++|++|++|.++.. ...
T Consensus 201 ~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~------gillI~DEv~~g~gr--~G~ 272 (476)
T 3i5t_A 201 AFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKH------DILYISDEVVTGFGR--CGE 272 (476)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSS
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHc------CCEEEEEecccCCcc--ccC
Confidence 788888886 34566666666667787655 99999999999 999999999986421 111
Q ss_pred cccc--cccCCCceEEEEcCcccCCcC-CceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHH
Q 011057 258 ELEW--DFRLPLVKSINVSGHKYGLVY-AGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIR 334 (494)
Q Consensus 258 ~~~~--~~~~~~~D~~~~~~hK~l~~p-~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~ 334 (494)
.... .+++ ..|.++++ |.+.++ ..+|+++.+++ .. +.+..............+ ++.++....+..++|+.
T Consensus 273 ~~~~~~~~~v-~pdi~t~s--K~l~~G~~plg~v~~~~~-i~-~~~~~~~~~~~~~~~~~t--~~~np~a~aAa~aaL~~ 345 (476)
T 3i5t_A 273 WFASEKVFGV-VPDIITFA--KGVTSGYVPLGGLAISEA-VL-ARISGENAKGSWFTNGYT--YSNQPVACAAALANIEL 345 (476)
T ss_dssp SCHHHHTTCC-CCSEEEEC--GGGGTTSSCCEEEEECHH-HH-HTTSGGGCTTCEECCCCT--TTTCHHHHHHHHHHHHH
T ss_pred ceeeecccCC-Ccchhhhh--hhhcCCCcCeEEEEECHH-HH-HHHhcCCcccccccccCC--CCcCHHHHHHHHHHHHH
Confidence 1111 1122 35777654 888776 78898887542 21 211110000000000111 22223444455555655
Q ss_pred hcHhHHHHHHHHHHHHHHHHHHHHhhCC---CeEEeecCCCccEEEEEecCCCC--C-------CHHHHHHHHHhcCcee
Q 011057 335 LGFEGYRNVMENCHENAMVLKEGLEKTG---RFNIVSKDEGVPLVAFSLKDNKR--H-------DEFEVAELLRRFGWIV 402 (494)
Q Consensus 335 l~~~g~~~~~~~~~~~a~~l~~~L~~~~---~~~~~~~~~~~~~v~f~~~~~~~--~-------~~~~l~~~L~~~Gi~v 402 (494)
+..+ +..++..++.+++++.|+++. .+..+.. ...++.+.+..... . ....+.+.|.++|+++
T Consensus 346 ~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~--~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v 420 (476)
T 3i5t_A 346 MERE---GIVDQAREMADYFAAALASLRDLPGVAETRS--VGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIV 420 (476)
T ss_dssp HHHT---THHHHHHHHHHHHHHHHHTTTTSTTEEEEEE--ETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTEEC
T ss_pred HHhH---HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe--cCceeEEEEecCccccccccchhHHHHHHHHHHHHCCCEE
Confidence 5443 456677788888888887653 2333322 34577777743210 0 1457889999999987
Q ss_pred eccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHHhc
Q 011057 403 PAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDS 446 (494)
Q Consensus 403 ~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~~ 446 (494)
... + .++|++....+|+++++++++.|+++++++.+
T Consensus 421 ~~~-------g-~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~~ 456 (476)
T 3i5t_A 421 RPL-------G-DLCVISPPLIISRAQIDEMVAIMRQAITEVSA 456 (476)
T ss_dssp EEE-------T-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred Eec-------C-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 441 2 57999977788999999999999999987754
No 207
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.85 E-value=1.5e-19 Score=191.64 Aligned_cols=303 Identities=17% Similarity=0.132 Sum_probs=205.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCC
Q 011057 97 QNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEV 176 (494)
Q Consensus 97 e~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~ 176 (494)
..++++.+|+++|.+. ..++++|++.||..++.++..+ +++|+++...|.|+..++.+.|+
T Consensus 197 i~eaE~~lA~~fGa~~------a~~v~nGts~An~~ai~al~~p-------------GD~VLv~r~~H~S~~~~l~lsGa 257 (715)
T 3n75_A 197 HKEAEQYIARVFNADR------SYMVTNGTSTANKIVGMYSAPA-------------GSTILIDRNCHKSLTHLMMMSDV 257 (715)
T ss_dssp HHHHHHHHHHHHTCSE------EEEESSHHHHHHHHHHHHHCCT-------------TCEEEEESSCCHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhCCCC------ceEECcHHHHHHHHHHHHhCCC-------------CCEEEECCCccHHHHHHHHHcCC
Confidence 3456677999999974 2455666679988777776331 36899999999999999999999
Q ss_pred eeEEEeccCCccc----c-----CHHHHHHhhhhC--Ce---EEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEE
Q 011057 177 ELKEVKLSEGYYV----M-----DPVKAVEMVDEN--TI---CVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIH 242 (494)
Q Consensus 177 ~v~~v~~~~~~~~----~-----d~~~L~~~i~~~--t~---~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~ 242 (494)
+++.++.+.+.+. + |+++|++++.++ ++ +|+++++ |++|.+.|+++|.++|+++ + ++
T Consensus 258 ~pv~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~------~--li 328 (715)
T 3n75_A 258 TPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVK------S--IH 328 (715)
T ss_dssp EEEEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCS------E--EE
T ss_pred EEEEEeccccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcC------c--EE
Confidence 9999987543333 3 899999999853 34 7889999 8999999999999999755 3 79
Q ss_pred EecccccccccccCCccc--ccccC-CCceEE---EEcCcccCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCccc
Q 011057 243 VDAASGGFIAPFLYPELE--WDFRL-PLVKSI---NVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTL 316 (494)
Q Consensus 243 vD~a~~~~~~~~~~~~~~--~~~~~-~~~D~~---~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 316 (494)
||+||+.+.. ..+..+ ..+.. ..+|.+ +.++||++.++.+.|++.+++. .....+.....+. .
T Consensus 329 vDEAH~~~~~--f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~-i~~~~~~~~~~~~--------~ 397 (715)
T 3n75_A 329 FDSAWVPYTN--FSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD-VNEETFNEAYMMH--------T 397 (715)
T ss_dssp EECTTCTTGG--GSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESC-CCHHHHHHHHHHT--------S
T ss_pred Eccccccccc--cCCccccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCch-hhHHHHHHHHHhh--------c
Confidence 9999987541 112111 01111 125655 8999999988888899988765 2111111111111 1
Q ss_pred ccCcchHHHHHHHHHHHHhcH-hHHHHHHHHHHHHHHHHHHHHhhCCC------eEEeecCCC-----------------
Q 011057 317 NFSKGSSQVIAQYYQLIRLGF-EGYRNVMENCHENAMVLKEGLEKTGR------FNIVSKDEG----------------- 372 (494)
Q Consensus 317 ~~s~~~~~~~a~~~al~~l~~-~g~~~~~~~~~~~a~~l~~~L~~~~~------~~~~~~~~~----------------- 372 (494)
.++.+...++++-++++.+.. .| +++.++..+++++++++|+++++ |+++.+...
T Consensus 398 STSpsy~~~AsldaA~~~~~~~~g-~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf 476 (715)
T 3n75_A 398 TTSPHYGIVASTETAAAMMKGNAG-KRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGF 476 (715)
T ss_dssp CSSCCHHHHHHHHHHHHHHSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCC
T ss_pred CCCchHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccc
Confidence 244555666777778888764 44 56789999999999999988753 455543210
Q ss_pred -----------ccEEEEEecCC--------CCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHH
Q 011057 373 -----------VPLVAFSLKDN--------KRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERL 433 (494)
Q Consensus 373 -----------~~~v~f~~~~~--------~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~ 433 (494)
-.=+++...+- .+++...+.+.|+++||.+-- .+...+=+-++...|++++++|
T Consensus 477 ~~~~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~-------~d~~~vl~l~s~g~~~~~~~~L 549 (715)
T 3n75_A 477 KNIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEK-------TGPYNLLFLFSIGIDKTKALSL 549 (715)
T ss_dssp TTCCSSSEEECTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSE-------EETTEEEEECCTTCCHHHHHHH
T ss_pred cccccCcccCCCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEe-------cCCCcEEEEeCCCCCHHHHHHH
Confidence 00122232221 156778999999999987411 1111232444556688999999
Q ss_pred HHHHHHHHHHHhc
Q 011057 434 VLDITKVLHELDS 446 (494)
Q Consensus 434 i~~l~~~~~~l~~ 446 (494)
+++|.++-+...+
T Consensus 550 ~~aL~~~~~~~~~ 562 (715)
T 3n75_A 550 LRALTDFKRAFDL 562 (715)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhc
Confidence 9999888766543
No 208
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.85 E-value=2.1e-19 Score=183.93 Aligned_cols=335 Identities=13% Similarity=0.008 Sum_probs=201.5
Q ss_pred ChHHHH-H-HHHH---HhcccCCCCCCChhhHHHHHHHHHHHHHHhC-CCCCCCCCcceeeecChhHHHHHHHHHHHHHH
Q 011057 68 MEPECD-K-LMMA---AINKNYVDMDEYPVTTELQNRCVNIIARLFN-APLEDSETAVGVGTVGSSEAIMLAGLAFKRKW 141 (494)
Q Consensus 68 ~~p~~~-~-~~~~---~~~~~~~~~~~~~~~~~le~~~~~~la~l~g-~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~ 141 (494)
.+|.+. + ++.+ .+..... +. .....+...++++.|+++++ .+. ..+++|+||++|+..++.+++...
T Consensus 71 ~~p~v~~~~A~~~~~~~~~~~~~-~~-~~~~~~~~~~la~~la~~~~~~~~-----~~v~~~~~gseA~~~aik~a~~~~ 143 (449)
T 2cjg_A 71 NPPALVDDREFHAELMQAALNKP-SN-SDVYSVAMARFVETFARVLGDPAL-----PHLFFVEGGALAVENALKAAFDWK 143 (449)
T ss_dssp SCHHHHTCHHHHHHHHHHHTCCC-CT-TTCCCHHHHHHHHHHHHHHCCTTC-----CEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCC-CC-cccCCHHHHHHHHHHHHhcCCCCC-----CEEEEeCchHHHHHHHHHHHHHHh
Confidence 478888 8 8888 6554321 21 11233445567788999987 222 359999999999999998775322
Q ss_pred HHHHHhcCCCCC-CCeEEeCCC-cchHHHHHHHH--------cCC-----eeEEEeccC--Cc-------cccCHHHHHH
Q 011057 142 QNKRKAEGKPFD-KPNIVTGAN-VQVCWEKFARY--------FEV-----ELKEVKLSE--GY-------YVMDPVKAVE 197 (494)
Q Consensus 142 ~~~~~~~g~~~~-~~~vi~~~~-~h~s~~~~~~~--------~G~-----~v~~v~~~~--~~-------~~~d~~~L~~ 197 (494)
..+....|.+.. +++||+.++ .|.....+... .+. ++..+|.++ .. ...++++|++
T Consensus 144 ~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~ 223 (449)
T 2cjg_A 144 SRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARA 223 (449)
T ss_dssp HHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHH
Confidence 110000111111 357777665 44332211111 222 455666543 11 1256777999
Q ss_pred hhh---hCCeEEEEeeCCCCcccccC----HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccc-cccCCCce
Q 011057 198 MVD---ENTICVAAILGSTLNGEFED----VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEW-DFRLPLVK 269 (494)
Q Consensus 198 ~i~---~~t~~vv~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~D 269 (494)
+++ +++++|++...++++|.+.+ +++|.++|++| |+++++|++|+++.. ....... .+++ ..|
T Consensus 224 ~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~------g~lli~DEv~~g~g~--~g~~~~~~~~~~-~~d 294 (449)
T 2cjg_A 224 AFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEF------DALLIFDEVQTGCGL--TGTAWAYQQLDV-APD 294 (449)
T ss_dssp HHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSTHHHHTC-CCS
T ss_pred HHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHC------CcEEEEeccccCCCc--cCcceeecccCC-Cce
Confidence 886 45667666655678998777 99999999999 999999999986421 1110011 1122 467
Q ss_pred EEEEcCcccCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHH
Q 011057 270 SINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHE 349 (494)
Q Consensus 270 ~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~ 349 (494)
+++++ |++ .+|++++++ +.. ..+. +.+........+ ...+.....+..++++.+..+ +..++..+
T Consensus 295 i~t~s--K~l----~iG~~~~~~-~~~-~~l~--~~~~~~~~~~~t--~~~n~~~~~aa~aal~~~~~~---~~~~~~~~ 359 (449)
T 2cjg_A 295 IVAFG--KKT----QVCGVMAGR-RVD-EVAD--NVFAVPSRLNST--WGGNLTDMVRARRILEVIEAE---GLFERAVQ 359 (449)
T ss_dssp EEEEC--GGG----SSEEEEECG-GGG-GSTT--CTTTSTTSSCCS--SSSCHHHHHHHHHHHHHHHHH---THHHHHHH
T ss_pred EEEec--Ccc----cEEEEEECH-HHh-hhhh--hcccCCcccccC--CCCCHHHHHHHHHHHHHHHhc---cHHHHHHH
Confidence 77654 887 378888765 222 2110 001111111111 222234444555666555443 45677788
Q ss_pred HHHHHHHHHhhC----CC-eEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccC
Q 011057 350 NAMVLKEGLEKT----GR-FNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIRED 424 (494)
Q Consensus 350 ~a~~l~~~L~~~----~~-~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~ 424 (494)
+++++.+.|+++ +. +..... ..+++.+.+.. ..+..++.++|.++|+.+... +..++|++++..
T Consensus 360 ~~~~l~~~L~~l~~~~~~~~~~~~~--~g~~~~~~~~~--~~~~~~~~~~l~~~Gv~v~~~-------g~~~iRi~~~~~ 428 (449)
T 2cjg_A 360 HGKYLRARLDELAADFPAVVLDPRG--RGLMCAFSLPT--TADRDELIRQLWQRAVIVLPA-------GADTVRFRPPLT 428 (449)
T ss_dssp HHHHHHHHHHHHHHHSTTTSEEEEE--ETTEEEEECSS--HHHHHHHHHHHHHTTEECEEE-------TTTEEEECCCTT
T ss_pred HHHHHHHHHHHHHhhCCCceeeEee--ccEEEEEEECC--hHHHHHHHHHHHHCCeEEecC-------CCCEEEEECCCC
Confidence 888888888764 43 433332 35677777742 123568999999999986442 245799998888
Q ss_pred CChHHHHHHHHHHHHHHHHH
Q 011057 425 FSRTLAERLVLDITKVLHEL 444 (494)
Q Consensus 425 ~t~~~id~~i~~l~~~~~~l 444 (494)
+++++++++++.|+++++++
T Consensus 429 ~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 429 VSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 89999999999999988754
No 209
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.85 E-value=6.3e-19 Score=179.58 Aligned_cols=331 Identities=13% Similarity=-0.024 Sum_probs=202.6
Q ss_pred ChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 011057 68 MEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA 147 (494)
Q Consensus 68 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~ 147 (494)
.+|.+.+++.+.+......... .......+++++++++++.+. ..+++|+||++|+..++.+++...
T Consensus 60 ~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~la~~~~~~~-----~~v~~~~gg~ea~~~a~~~~~~~~------ 126 (433)
T 1zod_A 60 CHPEIVSVIGEYAGKLDHLFSE--MLSRPVVDLATRLANITPPGL-----DRALLLSTGAESNEAAIRMAKLVT------ 126 (433)
T ss_dssp TCHHHHHHHHHHHHHCCCCCTT--CCCHHHHHHHHHHHHHSCTTC-----CEEEEESCHHHHHHHHHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHhCcccccc--cCCHHHHHHHHHHHHhCCCCc-----CEEEEeCchHHHHHHHHHHHHHhh------
Confidence 4688999988887653221112 223455667888999998754 359999999999999988765310
Q ss_pred cCCCCCCCeEEeCCC-cchHHHHHHHHcC-----------CeeEEEeccCC-----------ccccCHHHHHHhhhh---
Q 011057 148 EGKPFDKPNIVTGAN-VQVCWEKFARYFE-----------VELKEVKLSEG-----------YYVMDPVKAVEMVDE--- 201 (494)
Q Consensus 148 ~g~~~~~~~vi~~~~-~h~s~~~~~~~~G-----------~~v~~v~~~~~-----------~~~~d~~~L~~~i~~--- 201 (494)
| +++|++.++ .|.....+....+ .+++.++++.. .+.+|+++|++++++
T Consensus 127 -~----~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 201 (433)
T 1zod_A 127 -G----KYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSS 201 (433)
T ss_dssp -T----CCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCC
T ss_pred -C----CCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCC
Confidence 1 246766554 5554443333211 24556654310 012479999999974
Q ss_pred -CCeEEEEeeCC-CCcccccC----HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcC
Q 011057 202 -NTICVAAILGS-TLNGEFED----VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSG 275 (494)
Q Consensus 202 -~t~~vv~~~~~-~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 275 (494)
++++|+ +.++ +++|.+.+ +++|.++|++| |+++++|++|+++.. .......+......|.+++
T Consensus 202 ~~~~~vi-~~p~~~~~G~~~~~~~~l~~l~~l~~~~------~~~li~DEv~~~~g~--~g~~~~~~~~~~~~di~s~-- 270 (433)
T 1zod_A 202 GNLAAFI-AEPILSSGGIIELPDGYMAALKRKCEAR------GMLLILDEAQTGVGR--TGTMFACQRDGVTPDILTL-- 270 (433)
T ss_dssp SCEEEEE-ECSEETTTTCEECCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSTHHHHTCCCSEEEE--
T ss_pred CCeEEEE-EccccCCCCcccCCHHHHHHHHHHHHHh------CCEEEEeccccCCCc--CchHhHHhhcCCCCCEEEe--
Confidence 444554 4554 67898766 99999999999 999999999986421 1111111111123566654
Q ss_pred cccCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHH
Q 011057 276 HKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLK 355 (494)
Q Consensus 276 hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~ 355 (494)
.|++.++.++|+++++++ .+ +.+... .+.. ..+ .+.+.....+..++++.+..+ +..++..+++++++
T Consensus 271 sK~~~~G~~ig~~~~~~~-~~-~~~~~~-~~~~----~~t--~~~~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~ 338 (433)
T 1zod_A 271 SKTLGAGLPLAAIVTSAA-IE-ERAHEL-GYLF----YTT--HVSDPLPAAVGLRVLDVVQRD---GLVARANVMGDRLR 338 (433)
T ss_dssp CHHHHTTSSCEEEEECHH-HH-HHHHHT-TCCC----CCT--TTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHH
T ss_pred cccccCCCCeeEEEEhHH-HH-HhhccC-CCCC----CCC--CCcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHH
Confidence 488777788999987652 22 222111 1110 011 122234444555666655443 34566777788888
Q ss_pred HHHhhC----CCeEEeecCCCccEEEEEecCCC------CCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCC
Q 011057 356 EGLEKT----GRFNIVSKDEGVPLVAFSLKDNK------RHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDF 425 (494)
Q Consensus 356 ~~L~~~----~~~~~~~~~~~~~~v~f~~~~~~------~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~ 425 (494)
++|+++ +.+....+ ..+++.+.+.... ..+..++.++|.++|+.+...... ....++|++++..+
T Consensus 339 ~~l~~l~~~~~~~~~~~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---~~~~~lRi~~~~~~ 413 (433)
T 1zod_A 339 RGLLDLMERFDCIGDVRG--RGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLP---GMGGVFRIAPPLTV 413 (433)
T ss_dssp HHHHHHHHHCTTEEEEEE--ETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCT---TSCCEEEECCCTTC
T ss_pred HHHHHHHHhCCCeEEEEE--EEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEeccCCC---CCCCEEEEECCcCC
Confidence 888764 43333322 3467777664210 123678999999999987543211 12368999988888
Q ss_pred ChHHHHHHHHHHHHHHHHH
Q 011057 426 SRTLAERLVLDITKVLHEL 444 (494)
Q Consensus 426 t~~~id~~i~~l~~~~~~l 444 (494)
++++++++++.|+++++++
T Consensus 414 t~~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 414 SEDEIDLGLSLLGQAIERA 432 (433)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999999888754
No 210
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.84 E-value=3.3e-20 Score=186.74 Aligned_cols=349 Identities=14% Similarity=0.057 Sum_probs=215.9
Q ss_pred HHHHHHHHhhhhcCCCCCccccccc------CCChHHHHHHHHHHh-cc-cCCCCCCChhhHHHHHHHHHHHHHHhCCCC
Q 011057 41 AAYQIINDELMLDGNPRLNLASFVT------TWMEPECDKLMMAAI-NK-NYVDMDEYPVTTELQNRCVNIIARLFNAPL 112 (494)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~p~~~~~~~~~~-~~-~~~~~~~~~~~~~le~~~~~~la~l~g~~~ 112 (494)
.++..............++|+.+.+ .++++.+.++.. .+ +. ....|....|..++++.+.+|+....+.+.
T Consensus 15 ~i~~~~~~~~~~~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~ 93 (405)
T 3k7y_A 15 NILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYI 93 (405)
T ss_dssp HHHHHHHHHTTSSCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTT
T ss_pred hHHHHHHHHhcCCCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccc
Confidence 3444444333222334467776542 123466777766 43 22 234577777999999998888855443321
Q ss_pred CCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEec-cCCccccC
Q 011057 113 EDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKL-SEGYYVMD 191 (494)
Q Consensus 113 ~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~-~~~~~~~d 191 (494)
.. +...+++|+|+++|+.+++.++..- . . ++|+++++++..+..+++..|++++.+|+ +++++.+|
T Consensus 94 ~~-~~i~i~~t~G~~~al~~~~~~l~~~----------~-~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d 160 (405)
T 3k7y_A 94 ED-KKICTIQCIGGTGAIFVLLEFLKML----------N-V-ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDIN 160 (405)
T ss_dssp TT-TCEEEEEEEHHHHHHHHHHHHHHTT----------T-C-CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEEC
T ss_pred cc-cceEEEEcCchHHHHHHHHHHHHhc----------C-C-CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCcC
Confidence 10 1123689999999999888776431 1 2 68999999999999999999999999998 44457899
Q ss_pred HHHHHHhhhh--CCeEEEEeeC-CCCcccccC---HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcc-c-ccc
Q 011057 192 PVKAVEMVDE--NTICVAAILG-STLNGEFED---VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPEL-E-WDF 263 (494)
Q Consensus 192 ~~~L~~~i~~--~t~~vv~~~~-~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~-~~~ 263 (494)
+++|++++.+ ++++|+++.+ +||||.+.+ +++|+++|+++ ++++++|++|..+...-..... . ..+
T Consensus 161 ~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~------~~~vi~De~Y~~l~~~~~~~~~~~~~~~ 234 (405)
T 3k7y_A 161 YDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHK------KHVIIFDIAYQGFGHTNLEEDVLLIRKF 234 (405)
T ss_dssp HHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHH------CCEEEEEESCTTTSSSSTTGGGHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC------CeEEEEecCcccccCCCcccchHHHHHH
Confidence 9999999975 4567777665 799999954 66788999999 9999999999875421000000 0 011
Q ss_pred -cCCCceEEEEcCcccCC-cCCceEEEEE--eCCCCcccc---ccc--ccCCCCCCCCCcccccCcchHHHHHHHHHHHH
Q 011057 264 -RLPLVKSINVSGHKYGL-VYAGIGWVIW--RNKEDLPEE---LIF--HINYLGADQPTFTLNFSKGSSQVIAQYYQLIR 334 (494)
Q Consensus 264 -~~~~~D~~~~~~hK~l~-~p~g~G~~~~--~~~~~~~~~---~~~--~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~ 334 (494)
....--++..++.|.+. +++++|++++ .++..+... +.. ...|. .. ..+++.++...
T Consensus 235 ~~~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------~~---~~~~q~~~~~~ 300 (405)
T 3k7y_A 235 EEKNIAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYS-----------SP---VIHTNRILCQL 300 (405)
T ss_dssp HTTTCCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTS-----------SC---CHHHHHHHHHH
T ss_pred HhcCCcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccC-----------CC---cHHHHHHHHHH
Confidence 11112244557778764 8999999864 232211110 000 01111 11 12223332222
Q ss_pred hc--------HhHHHHHHHHHHHHHHHHHHHHh----hCCC---eEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcC
Q 011057 335 LG--------FEGYRNVMENCHENAMVLKEGLE----KTGR---FNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFG 399 (494)
Q Consensus 335 l~--------~~g~~~~~~~~~~~a~~l~~~L~----~~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G 399 (494)
+. .+.++++.+++.++++++.+.|+ +++. +++..+ +.+++.|.- ++. +++++|.+.|
T Consensus 301 l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p--~gg~f~~~~-----l~~-~~~~~L~~~g 372 (405)
T 3k7y_A 301 LNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKK--QRGLFSFVP-----LLA-KIAEHLKTHH 372 (405)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSS--CCSSEEECG-----GGG-GGTTTTTTTT
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccC--CceEEEecC-----CCH-HHHHHHHHCC
Confidence 21 12244556678888999999999 7752 444433 456655531 112 4456777788
Q ss_pred ceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHH
Q 011057 400 WIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHE 443 (494)
Q Consensus 400 i~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~ 443 (494)
+.+. |. + |+++.. .+.++++.+++.|+++++.
T Consensus 373 V~v~----p~---~----Ris~a~-~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 373 IYII----NN---G----RINVSG-ITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp EECC----TT---S----EEEGGG-CCTTHHHHHHHHHHHHHHC
T ss_pred Eeec----CC---C----eEEEec-cCHHHHHHHHHHHHHHHhh
Confidence 8642 21 1 999863 4567899999999888753
No 211
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.84 E-value=7e-19 Score=180.26 Aligned_cols=331 Identities=10% Similarity=-0.016 Sum_probs=199.1
Q ss_pred ChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 011057 68 MEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA 147 (494)
Q Consensus 68 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~ 147 (494)
.+|.+.+++.+.++... .+....+..+...+++++|+++++.+. ...+++|+||+||+..++++++...
T Consensus 81 ~~p~v~~A~~~~~~~~~-~~~~~~~~~~~~~~la~~l~~~~~~~~----~~~v~~~~sGseA~~~alk~a~~~~------ 149 (453)
T 4ffc_A 81 SHPAVAAAIADQATHFT-HTCFMVTPYEQYVQVAELLNALTPGDH----DKRTALFNSGAEAVENAIKVARLAT------ 149 (453)
T ss_dssp TCHHHHHHHHHHHHHCS-CCTTTTSCCHHHHHHHHHHHHHSSCSS----CEEEEEESSHHHHHHHHHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHhcc-ccccCcCCCHHHHHHHHHHHHhCCCCC----CcEEEEeCcHHHHHHHHHHHHHHhc------
Confidence 47889998888876542 222222345566678899999987532 1359999999999999998876421
Q ss_pred cCCCCCCCeEEeCC-CcchHHHHHHHHcCC-------------eeEEEeccC---C--------ccccCHHHHHHhhhhC
Q 011057 148 EGKPFDKPNIVTGA-NVQVCWEKFARYFEV-------------ELKEVKLSE---G--------YYVMDPVKAVEMVDEN 202 (494)
Q Consensus 148 ~g~~~~~~~vi~~~-~~h~s~~~~~~~~G~-------------~v~~v~~~~---~--------~~~~d~~~L~~~i~~~ 202 (494)
| +++|++.+ ..|.....+....|. .+..++... + .+..+++.|++.+.++
T Consensus 150 -g----~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~ 224 (453)
T 4ffc_A 150 -G----RPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQ 224 (453)
T ss_dssp -C----CCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGG
T ss_pred -C----CCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCC
Confidence 1 24565544 455444433333221 456666541 1 0112246667766656
Q ss_pred CeEEEEeeCCCCc-ccccC----HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcc
Q 011057 203 TICVAAILGSTLN-GEFED----VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHK 277 (494)
Q Consensus 203 t~~vv~~~~~~~t-G~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK 277 (494)
+.+++++.|++++ |.+.+ +++|.++|++| |+++++|++|.++.. .......+..-...|.++++ |
T Consensus 225 ~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~------~~llI~DEv~~g~g~--~g~~~a~~~~~~~pdi~t~s--K 294 (453)
T 4ffc_A 225 SLAAIIIEPIQGEGGFIVPAPGFLATLTAWASEN------GVVFIADEVQTGFAR--TGAWFASEHEGIVPDIVTMA--K 294 (453)
T ss_dssp GEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSTHHHHTCCCSEEEEC--G
T ss_pred CEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHc------CCEEEEecCccCCCc--ccccchhhhcCCCcchHhhh--h
Confidence 6667777777766 55655 99999999999 999999999986421 11111111111135666654 8
Q ss_pred cCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHH
Q 011057 278 YGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEG 357 (494)
Q Consensus 278 ~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~ 357 (494)
.+.+++++|+++.+++ .+ +.+. ......+ .+.+.....+..++++.+..+ +..++..++.+++++.
T Consensus 295 ~~~~G~~~G~~~~~~~-i~-~~~~-------~~~~~~t--~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~ 360 (453)
T 4ffc_A 295 GIAGGMPLSAVTGRAE-LM-DAVY-------AGGLGGT--YGGNPVTCAAAVAALGVMREL---DLPARARAIEASVTSR 360 (453)
T ss_dssp GGGTTSSCEEEEEEHH-HH-TTSC-------TTSSCCS--SSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHH
T ss_pred hhcCCcCeEEEEECHH-HH-hhhc-------ccCcCCC--CCcCHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHH
Confidence 8877788999887542 22 1111 0000111 122233344445555544343 3444555555555555
Q ss_pred Hh----hCCCeEEeecCCCccEEEEEecC-----CCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChH
Q 011057 358 LE----KTGRFNIVSKDEGVPLVAFSLKD-----NKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRT 428 (494)
Q Consensus 358 L~----~~~~~~~~~~~~~~~~v~f~~~~-----~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~ 428 (494)
|+ ..+.+..+.. ...++.+.+.. +......++.+.|.++|+.+.... ....++|+++...++++
T Consensus 361 l~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~iRi~~~~~~t~e 433 (453)
T 4ffc_A 361 LSALAEEVDIIGEVRG--RGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCG-----TFGNVIRLLPPLVIGDD 433 (453)
T ss_dssp HHHHHHHCSSEEEEEE--ETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEEC-----TTSCEEEECCCTTCCHH
T ss_pred HHHHHhhCCCeEEEEe--eceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCC-----CCCCEEEEECCCCCCHH
Confidence 54 4454443332 34577777632 111235678899999999874321 12357999988888999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 011057 429 LAERLVLDITKVLHELD 445 (494)
Q Consensus 429 ~id~~i~~l~~~~~~l~ 445 (494)
+++++++.|+++++++.
T Consensus 434 ~i~~~l~~l~~~l~~~~ 450 (453)
T 4ffc_A 434 LLDEGITALSDIIRAKA 450 (453)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988764
No 212
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.84 E-value=5.6e-18 Score=173.39 Aligned_cols=355 Identities=14% Similarity=0.057 Sum_probs=203.0
Q ss_pred cCCCCCcccccc----cCCChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhH
Q 011057 53 DGNPRLNLASFV----TTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSE 128 (494)
Q Consensus 53 ~~~~~~~~~~~~----~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~ 128 (494)
+|+.++.+.+.. ..+.+|.+.+++.+.+..... +.......+...+++++|+++++.+. ..+++|+||++
T Consensus 42 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~~~~~-----~~v~~~~sGse 115 (448)
T 3dod_A 42 NGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAH-STLLGMTNVPATQLAETLIDISPKKL-----TRVFYSDSGAE 115 (448)
T ss_dssp TSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSC-CCCSSSEEHHHHHHHHHHHHHSCTTE-----EEEEEESSHHH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccC-ccccccCCHHHHHHHHHHHHhCCCCC-----CEEEEeCchHH
Confidence 455555544421 123468899999888876422 11222344566678899999986543 35999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcc-hHHHHHHHHcC------------CeeEEEeccCCccc------
Q 011057 129 AIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQ-VCWEKFARYFE------------VELKEVKLSEGYYV------ 189 (494)
Q Consensus 129 a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h-~s~~~~~~~~G------------~~v~~v~~~~~~~~------ 189 (494)
|+..++++++..+.. .|.+ .+++|++.+.++ .....+....| ..+..++.... ++
T Consensus 116 A~~~al~~~~~~~~~----~G~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 189 (448)
T 3dod_A 116 AMEIALKMAFQYWKN----IGKP-EKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYV-YRSESGDP 189 (448)
T ss_dssp HHHHHHHHHHHHHHH----TTCT-TCCEEEEEC-----------------------------CEEECCCCC-TTSSSCCH
T ss_pred HHHHHHHHHHHHHHh----hCCC-CCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCcc-ccCCccch
Confidence 999999998764322 1211 135677666554 43332222222 12344444321 22
Q ss_pred -----cCHHHHHHhhh---hCCeEEEEeeCC-CCcccccC----HHHHHHHHHHhhcccCCCceEEEecccccccccccC
Q 011057 190 -----MDPVKAVEMVD---ENTICVAAILGS-TLNGEFED----VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLY 256 (494)
Q Consensus 190 -----~d~~~L~~~i~---~~t~~vv~~~~~-~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~ 256 (494)
.|+++|++++. +++++|++...+ +++|.+.+ +++|.++|++| |++|++|++|.++.. ..
T Consensus 190 ~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~------~~~lI~DEv~~g~g~--~g 261 (448)
T 3dod_A 190 DECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTY------DVLMIVDEVATGFGR--TG 261 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TS
T ss_pred hhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHh------CCEEEEeccccCCCc--cc
Confidence 25899999987 334455554444 67787766 99999999999 999999999986421 11
Q ss_pred Cccccc-ccCCCceEEEEcCcccCCcCC-ceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHH
Q 011057 257 PELEWD-FRLPLVKSINVSGHKYGLVYA-GIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIR 334 (494)
Q Consensus 257 ~~~~~~-~~~~~~D~~~~~~hK~l~~p~-g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~ 334 (494)
...... +++ ..|.++++ |.+.+++ ++|+++.+++ .. +.+.. .+...........++.++....+..++|+.
T Consensus 262 ~~~a~~~~~~-~~di~t~s--K~l~~G~~~ig~v~~~~~-~~-~~~~~--~~~~~~~~~~~~t~~~~~~~~aaa~aal~~ 334 (448)
T 3dod_A 262 KMFACEHENV-QPDLMAAG--KGITGGYLPIAVTFATED-IY-KAFYD--DYENLKTFFHGHSYTGNQLGCAVALENLAL 334 (448)
T ss_dssp SSSGGGGGTC-CCSEEEEC--GGGGTTSSCCEEEEEEHH-HH-HTTCS--CGGGCCCCCCCCTTTTCHHHHHHHHHHHHH
T ss_pred chhhhhhcCC-CCCEEEec--ccccCCcCceEEEEECHH-HH-HHhhh--ccccCCcccccCCCCcCHHHHHHHHHHHHH
Confidence 111111 122 35766654 8887773 8898887653 21 11111 000000000001122223444455555655
Q ss_pred hcHhHHHHHHHHHHHHHHHHHHHHhh---CCCeEEeecCCCccEEEEEecCCCCC---------CHHHHHHHHHhcCcee
Q 011057 335 LGFEGYRNVMENCHENAMVLKEGLEK---TGRFNIVSKDEGVPLVAFSLKDNKRH---------DEFEVAELLRRFGWIV 402 (494)
Q Consensus 335 l~~~g~~~~~~~~~~~a~~l~~~L~~---~~~~~~~~~~~~~~~v~f~~~~~~~~---------~~~~l~~~L~~~Gi~v 402 (494)
+..+ +..++..++.+++++.|++ .+.+..... ...++.+.+...... ...++++.|.++|+.+
T Consensus 335 ~~~~---~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~ 409 (448)
T 3dod_A 335 FESE---NIVEQVAEKSKKLHFLLQDLHALPHVGDIRQ--LGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLT 409 (448)
T ss_dssp HHHT---THHHHHHHHHHHHHHHHHHHTTSTTEEEEEE--ETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEEC
T ss_pred Hhcc---cHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe--eeEEEEEEEccCcccccccchhhHHHHHHHHHHHHCCcEE
Confidence 4333 3455555666666666654 342332222 345777777432100 0368999999999986
Q ss_pred eccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHHhcC
Q 011057 403 PAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDSL 447 (494)
Q Consensus 403 ~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~~~ 447 (494)
... + .++|++.+..+|+++++++++.|+++++++..+
T Consensus 410 ~~~-------~-~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 446 (448)
T 3dod_A 410 RPL-------G-DVIAFLPPLASTAEELSEMVAIMKQAIHEVTSL 446 (448)
T ss_dssp CEE-------T-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ecc-------C-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 431 2 579999888899999999999999999887654
No 213
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.84 E-value=2.4e-19 Score=180.33 Aligned_cols=285 Identities=17% Similarity=0.079 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHH-----H
Q 011057 97 QNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKF-----A 171 (494)
Q Consensus 97 e~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~-----~ 171 (494)
..++++.|+++.|.+. .+++++|++|+.. +.++.+ .+++|+++.+.|...... +
T Consensus 69 ~~~l~~~la~l~g~~~-------~~~~~sG~~Ai~~-~~~l~~-------------~gd~Vi~~~~~y~~~~~~~~~~~~ 127 (400)
T 3nmy_A 69 RFAYERCVAALEGGTR-------AFAFASGMAATST-VMELLD-------------AGSHVVAMDDLYGGTFRLFERVRR 127 (400)
T ss_dssp HHHHHHHHHHHHTCSE-------EEEESSHHHHHHH-HHTTSC-------------TTCEEEEESSCCHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHhCCCC-------EEEecCHHHHHHH-HHHHcC-------------CCCEEEEeCCCchHHHHHHHHhhH
Confidence 3446666999999863 7788888999876 333211 135899999998755444 3
Q ss_pred HHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEEEeccccccc
Q 011057 172 RYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFI 251 (494)
Q Consensus 172 ~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~ 251 (494)
+..|++++.++.+ |+++|++++++++++|++..++|++|.+.|+++|+++|+++ |+++++|++|+.+.
T Consensus 128 ~~~g~~~~~v~~~------d~~~l~~~i~~~~~~v~~e~~~np~G~~~~l~~i~~la~~~------g~~livDe~~~~~~ 195 (400)
T 3nmy_A 128 RTAGLDFSFVDLT------DPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKH------GLLTVVDNTFASPM 195 (400)
T ss_dssp HHHCCEEEEECTT------SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHT------TCEEEEECTTTHHH
T ss_pred hhcCeEEEEECCC------CHHHHHHHhccCCCEEEEECCCCCCCeeecHHHHHHHHHHc------CCEEEEECCCcccc
Confidence 3469998888753 78999999999999999999999999999999999999999 99999999998643
Q ss_pred ccccCCcccccccCCCceEEEEcCcccCCcCC-ce-E-EEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHH
Q 011057 252 APFLYPELEWDFRLPLVKSINVSGHKYGLVYA-GI-G-WVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQ 328 (494)
Q Consensus 252 ~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~-g~-G-~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~ 328 (494)
. ..+ . + .++|+++.+++|++.+|. .. | +++++++... +.+.....+.+ .. ...+..
T Consensus 196 ~--~~~-~--~---~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~-~~l~~~~~~~g---------~~---~~~~~a 254 (400)
T 3nmy_A 196 L--QRP-L--S---LGADLVVHSATKYLNGHSDMVGGIAVVGDNAELA-EQMAFLQNSIG---------GV---QGPFDS 254 (400)
T ss_dssp H--CCG-G--G---GTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHH-HHHHHHHHHHC---------CB---CCHHHH
T ss_pred c--CCh-h--h---cCCcEEEecCccccCCCCCcceeEEEEeCCHHHH-HHHHHHHHhcC---------CC---CCHHHH
Confidence 2 111 1 1 268999999999997662 34 4 3444443221 21111111111 11 122334
Q ss_pred HHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCC----------------CccEEEEEecCCCCCCHHHHH
Q 011057 329 YYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDE----------------GVPLVAFSLKDNKRHDEFEVA 392 (494)
Q Consensus 329 ~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~----------------~~~~v~f~~~~~~~~~~~~l~ 392 (494)
|.+++.+ +.+..+.++..+++.++.+.|++.+.++.+..+. ...+++|.+++. ......+.
T Consensus 255 ~~~l~~l--~~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~-~~~~~~~~ 331 (400)
T 3nmy_A 255 FLALRGL--KTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGG-FDAAKRFC 331 (400)
T ss_dssp HHHHHHH--TTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTH-HHHHHHHH
T ss_pred HHHHHhH--hHHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCc-HHHHHHHH
Confidence 4444433 4456778888999999999999998776443221 246899998541 01133445
Q ss_pred HHHHhcCceeec------cccCCC--------------CCCceEEEEEeccCCChHHHHHHHHHHHHHHH
Q 011057 393 ELLRRFGWIVPA------YTMPAD--------------AQHITVLRVVIREDFSRTLAERLVLDITKVLH 442 (494)
Q Consensus 393 ~~L~~~Gi~v~~------~~~~~~--------------~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~ 442 (494)
+.|.-.++.++. ...|.. .....++|+|++. |+++.++++|+++++
T Consensus 332 ~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl----e~~~dli~dl~~al~ 397 (400)
T 3nmy_A 332 EKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGI----EDLGDLRGDLERALV 397 (400)
T ss_dssp HHCSSSEECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS----SCHHHHHHHHHHHHC
T ss_pred HcCCcceEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCc----CCHHHHHHHHHHHHh
Confidence 554433222110 011110 0123689999975 567777888888775
No 214
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.83 E-value=1.4e-18 Score=177.19 Aligned_cols=332 Identities=13% Similarity=0.058 Sum_probs=195.2
Q ss_pred cCCCCCccccccc----CCChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhH
Q 011057 53 DGNPRLNLASFVT----TWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSE 128 (494)
Q Consensus 53 ~~~~~~~~~~~~~----~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~ 128 (494)
+|+.++.+.+... .+.+|.+.+++.+.+...... .++ .....+++++++++++ +. ..+++|+||++
T Consensus 53 ~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~--~~~~~~l~~~la~~~~-~~-----~~v~~~~sGse 122 (434)
T 3l44_A 53 DGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLY--GTP--TALEVKFAKMLKEAMP-AL-----DKVRFVNSGTE 122 (434)
T ss_dssp TCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCSCC--SSC--CHHHHHHHHHHHHHCT-TC-----SEEEEESSHHH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcCC--CCC--CHHHHHHHHHHHHhCC-CC-----CEEEEeCchHH
Confidence 4555555544321 134788999988887663221 122 2334456777898886 22 35999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCc-chHHHHHHHHcCCe-------------------eEEEeccCCcc
Q 011057 129 AIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANV-QVCWEKFARYFEVE-------------------LKEVKLSEGYY 188 (494)
Q Consensus 129 a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~-h~s~~~~~~~~G~~-------------------v~~v~~~~~~~ 188 (494)
|+..++++++... | +++|++...+ |.....+....|.. +..+|.
T Consensus 123 a~~~ai~~a~~~~-------~----~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 186 (434)
T 3l44_A 123 AVMTTIRVARAYT-------G----RTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPF----- 186 (434)
T ss_dssp HHHHHHHHHHHHH-------C----CCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECT-----
T ss_pred HHHHHHHHHHHhh-------C----CCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCc-----
Confidence 9999998876531 1 2467665554 43332222222221 222221
Q ss_pred ccCHHHHHHhhhh---CCeEEEEeeCCCCcccccC----HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccc
Q 011057 189 VMDPVKAVEMVDE---NTICVAAILGSTLNGEFED----VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEW 261 (494)
Q Consensus 189 ~~d~~~L~~~i~~---~t~~vv~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~ 261 (494)
.|+++|++++++ ++++|++...++++|.+.| +++|.++|++| |++||+|++|.++ . .......
T Consensus 187 -~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~------~illI~DEv~~g~-~--~g~~~~~ 256 (434)
T 3l44_A 187 -NNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEA------GALVIYDEVITAF-R--FMYGGAQ 256 (434)
T ss_dssp -TCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTT------TCEEEEECTTTTT-T--SSSSCHH
T ss_pred -ccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccce-e--ccccHHH
Confidence 288999999873 4555655555556788877 99999999999 9999999999875 1 1111111
Q ss_pred c-ccCCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccccc-cCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhH
Q 011057 262 D-FRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFH-INYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEG 339 (494)
Q Consensus 262 ~-~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g 339 (494)
+ +++ ..|.++++ |.+.++.++|+++.+++ .+ +.+... ..+... + .+.+.....+..++++.+..
T Consensus 257 ~~~~~-~~di~t~s--K~~~~G~~iG~~~~~~~-i~-~~~~~~~~~~~~~-----t--~~~~~~a~aaa~aal~~~~~-- 322 (434)
T 3l44_A 257 DLLGV-TPDLTALG--KVIGGGLPIGAYGGKKE-IM-EQVAPLGPAYQAG-----T--MAGNPASMASGIACLEVLQQ-- 322 (434)
T ss_dssp HHHTC-CCSEEEEE--GGGGTTSSCEEEEECHH-HH-TTBTTTSSBCCCC-----T--TTTCHHHHHHHHHHHHHHTS--
T ss_pred HHcCC-CCCeeehh--hhhcCCcCeeeEEEcHH-HH-HhhccCCCcccCC-----C--CCcCHHHHHHHHHHHHHHHc--
Confidence 1 122 35666544 87778888999876442 22 111110 001100 1 22223344445555555433
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC----CCeEEeecCCCccEEEEEecCCCC-----------CCHHHHHHHHHhcCceeec
Q 011057 340 YRNVMENCHENAMVLKEGLEKT----GRFNIVSKDEGVPLVAFSLKDNKR-----------HDEFEVAELLRRFGWIVPA 404 (494)
Q Consensus 340 ~~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~~~~~v~f~~~~~~~-----------~~~~~l~~~L~~~Gi~v~~ 404 (494)
++..++..++.+++++.|+++ +....... ..+++.+.+..... ....++.+.|.++|+.+..
T Consensus 323 -~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~ 399 (434)
T 3l44_A 323 -EGLYEKLDELGATLEKGILEQAAKHNIDITLNR--LKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAP 399 (434)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE--ETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCS
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEe--eccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEee
Confidence 345566666667777776653 42222222 35677777743210 1135788999999998643
Q ss_pred cccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHHhc
Q 011057 405 YTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDS 446 (494)
Q Consensus 405 ~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~~ 446 (494)
. +...+|++ ..+|+++++++++.|+++++++.+
T Consensus 400 ~-------~~~~~rl~--~~~t~e~i~~~l~~l~~~l~~~~~ 432 (434)
T 3l44_A 400 S-------KYEAWFLT--TEHTKEDIEYTIEAVGRAFAALAD 432 (434)
T ss_dssp S-------TTCCEECC--TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred c-------CCCcEEEe--cccCHHHHHHHHHHHHHHHHHHHh
Confidence 2 12347775 467999999999999999987754
No 215
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.83 E-value=6.6e-19 Score=179.28 Aligned_cols=336 Identities=13% Similarity=0.057 Sum_probs=194.6
Q ss_pred cCCCCCccccccc----CCChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhH
Q 011057 53 DGNPRLNLASFVT----TWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSE 128 (494)
Q Consensus 53 ~~~~~~~~~~~~~----~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~ 128 (494)
+|+.++.+.+... .+.+|.+.+++.+.++...... ++ .....+++++++++++ .. ..+++|+||++
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~--~~--~~~~~~l~~~la~~~~-~~-----~~v~~~~~Gse 120 (429)
T 3k28_A 51 DGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFG--AP--TEIENKLAKLVIERVP-SI-----EIVRMVNSGTE 120 (429)
T ss_dssp TCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSCCS--SC--CHHHHHHHHHHHHHST-TC-----SEEEEESSHHH
T ss_pred CCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCcCcC--CC--CHHHHHHHHHHHHhCC-CC-----CEEEEeCChHH
Confidence 5566665555332 1347889999988887643221 22 2233456677888875 22 35999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeC-CCcchHHHHHHHHcCCeeEEEeccCCcc-------------ccCHHH
Q 011057 129 AIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTG-ANVQVCWEKFARYFEVELKEVKLSEGYY-------------VMDPVK 194 (494)
Q Consensus 129 a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~-~~~h~s~~~~~~~~G~~v~~v~~~~~~~-------------~~d~~~ 194 (494)
|+..++++++... | +++|++. ...|.....++...|..+..++.....+ .-|+++
T Consensus 121 a~~~ai~~a~~~~-------~----~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 189 (429)
T 3k28_A 121 ATMSALRLARGYT-------G----RNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLES 189 (429)
T ss_dssp HHHHHHHHHHHHH-------T----CCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHH
T ss_pred HHHHHHHHHHHhh-------C----CCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHH
Confidence 9999998886531 1 2456554 4455443333322333222222111000 018899
Q ss_pred HHHhhhh---CCeEEEEeeCCCCcccccC----HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccc-cccCC
Q 011057 195 AVEMVDE---NTICVAAILGSTLNGEFED----VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEW-DFRLP 266 (494)
Q Consensus 195 L~~~i~~---~t~~vv~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~ 266 (494)
|++++.+ ++++|++...++++|.+.| +++|.++|++| |+++|+|++|.++ . ....... .++.
T Consensus 190 le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~------~~~li~DEv~~g~-~--~g~~~~~~~~~~- 259 (429)
T 3k28_A 190 VKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQN------GALLIFDEVMTGF-R--VAYNCGQGYYGV- 259 (429)
T ss_dssp HHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHH------TCEEEEECTTTTT-T--SSTTHHHHHHTC-
T ss_pred HHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHc------CCEEEEecccccc-c--cCcchHHHHhCC-
Confidence 9998873 4555655555556788887 99999999999 9999999999764 1 1111111 1121
Q ss_pred CceEEEEcCcccCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHH
Q 011057 267 LVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMEN 346 (494)
Q Consensus 267 ~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~ 346 (494)
..|.+++ .|.+.++.++|+++.+++ .+ +.+........ ..+ ++.+.....+..++++.+. ++..++
T Consensus 260 ~~di~t~--sK~~~~G~~iG~~~~~~~-~~-~~~~~~~~~~~----~~t--~~~~~~a~aaa~aal~~~~----~~~~~~ 325 (429)
T 3k28_A 260 TPDLTCL--GKVIGGGLPVGAYGGKAE-IM-RQVAPSGPIYQ----AGT--LSGNPLAMAAGYETLVQLT----PESYVE 325 (429)
T ss_dssp CCSEEEE--CGGGGTTSCCEEEEECHH-HH-TTBTTTSSBCC----CCT--TTTCHHHHHHHHHHHHTCC----HHHHHH
T ss_pred CCceehh--hhhhcCCCCeEEEEEcHH-HH-hhhccCCCccc----cCC--CCCChHHHHHHHHHHHHHH----HHHHHH
Confidence 3566654 488777788999877542 22 11111000000 001 1222233344444454433 466777
Q ss_pred HHHHHHHHHHHHhhC----CCeEEeecCCCccEEEEEecCCCC-----------CCHHHHHHHHHhcCceeeccccCCCC
Q 011057 347 CHENAMVLKEGLEKT----GRFNIVSKDEGVPLVAFSLKDNKR-----------HDEFEVAELLRRFGWIVPAYTMPADA 411 (494)
Q Consensus 347 ~~~~a~~l~~~L~~~----~~~~~~~~~~~~~~v~f~~~~~~~-----------~~~~~l~~~L~~~Gi~v~~~~~~~~~ 411 (494)
..++++++++.|+++ +....+.. ...++.+.+..... ....++.+.|.++|+.+...
T Consensus 326 ~~~~~~~l~~~L~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~------ 397 (429)
T 3k28_A 326 FERKAEMLEAGLRKAAEKHGIPHHINR--AGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPS------ 397 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEE--ETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSS------
T ss_pred HHHHHHHHHHHHHHHHhhCCCCEEEEe--eccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEecC------
Confidence 778888888887764 42222222 34577777643210 11367889999999986431
Q ss_pred CCceEEEEEeccCCChHHHHHHHHHHHHHHHHH
Q 011057 412 QHITVLRVVIREDFSRTLAERLVLDITKVLHEL 444 (494)
Q Consensus 412 ~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l 444 (494)
+...+|++ ..+|+++++++++.|+++++++
T Consensus 398 -~~~~~r~~--~~~t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 398 -QFEGLFLS--TVHSDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp -TTSCBCCC--TTCCHHHHHHHHHHHHHHHHTC
T ss_pred -CCCCEEEE--CCCCHHHHHHHHHHHHHHHHHH
Confidence 12346775 4678999999999999887654
No 216
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.83 E-value=1.5e-19 Score=181.79 Aligned_cols=251 Identities=12% Similarity=0.038 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcceee---ecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCC-CcchHHHH---
Q 011057 97 QNRCVNIIARLFNAPLEDSETAVGVG---TVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGA-NVQVCWEK--- 169 (494)
Q Consensus 97 e~~~~~~la~l~g~~~~~~~~~~~~~---t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~-~~h~s~~~--- 169 (494)
.+++++.+|+++|.+. .++ +++|++|+..++.++.++ +++|+++. +.|..+..
T Consensus 61 ~~~Le~~lA~l~g~e~-------alv~p~~~sGt~Ai~~al~all~~-------------GD~Vl~~~~~~y~~~~~~~~ 120 (409)
T 3jzl_A 61 RDTLERVYATVFKTEA-------ALVRPQIISGTHAISTVLFGILRP-------------DDELLYITGQPYDTLEEIVG 120 (409)
T ss_dssp HHHHHHHHHHHHTCSE-------EEEETTSCSHHHHHHHHHHHHCCT-------------TCEEEECSSSCCTTHHHHHT
T ss_pred HHHHHHHHHHHhCCCc-------EEEECCCccHHHHHHHHHHHhcCC-------------CCEEEEeCCCCcHhHHHHHh
Confidence 4456677999999974 455 889999998888776321 26888887 88877764
Q ss_pred -------HHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEee----CCCCcccccCHHHHHHHHHH--hhcccC
Q 011057 170 -------FARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAIL----GSTLNGEFEDVKLLNDLLAE--KNKETG 236 (494)
Q Consensus 170 -------~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~----~~~~tG~~~~l~~I~~la~~--~~~~~~ 236 (494)
.++..|++++.++++++ +.+|+++|+++++++|++|++.. ++|++|.+.|+++|+++|++ +
T Consensus 121 ~~g~~~~~l~~~G~~~~~v~~~~~-g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~----- 194 (409)
T 3jzl_A 121 IRKQGQGSLKDFHIGYSSVPLLEN-GDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINP----- 194 (409)
T ss_dssp SSSSSSSCTGGGTCEEEECCCCTT-SCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCT-----
T ss_pred cccchhhHHHHcCCEEEEeCCCCC-CCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCC-----
Confidence 34567999999998765 78999999999999999999999 99999999999999999999 8
Q ss_pred CCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCC--ceEEEEEeCCCCccccccc--ccCCCCCCCC
Q 011057 237 WDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYA--GIGWVIWRNKEDLPEELIF--HINYLGADQP 312 (494)
Q Consensus 237 ~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~--g~G~~~~~~~~~~~~~~~~--~~~y~~~~~~ 312 (494)
+++++||++|+.+... ..+ . . .++|+++.++||++.++. ..|+++.+ +..+ +.+.. ...+++...
T Consensus 195 -~~~livD~a~~~~~~~-~~p-~--~---~g~Div~~S~sK~lgg~~~~~GG~v~~~-~~li-~~l~~~~~~~~~g~~~- 263 (409)
T 3jzl_A 195 -EVIVFVDNCYGEFVEY-QEP-P--E---VGADIIAGSLIKNPGGGLAKTGGYIAGK-EALV-DLCGYRLTTPGIGREA- 263 (409)
T ss_dssp -TCEEEEECTTCTTTSS-CCS-G--G---GTCSEEEEETTSGGGTTTCSSCEEEEEC-HHHH-HHHHHHHSCTTTGGGC-
T ss_pred -CCEEEEeCCccccccc-CCc-c--c---cCCeEEEECccccCCccCCceEEEEEeC-HHHH-HHHHHHhccccccccc-
Confidence 9999999999876421 111 1 1 268999999999987653 23666654 3332 22211 111111100
Q ss_pred CcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCcc-----EEEEEecCCCCCC
Q 011057 313 TFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVP-----LVAFSLKDNKRHD 387 (494)
Q Consensus 313 ~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~-----~v~f~~~~~~~~~ 387 (494)
+... .. .+++++.+ .....+.++..+++.++.+.|+++| +++...+ .. +++|.+.+ ...
T Consensus 264 -----g~~~-~~---~~~~l~gl--~~~~~r~~~~~~~a~~la~~L~~~g-~~v~p~~--~~~~~~~i~~i~l~~--~~~ 327 (409)
T 3jzl_A 264 -----GASL-YS---LLEMYQGF--FLAPHVTAQAIKGARFTAAMLAEFG-VEADPVW--DAPRTDLIQSVSFHN--KEK 327 (409)
T ss_dssp -----CCCT-TC---HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTT-CEEESCT--TSCCSSSCCEEECSC--HHH
T ss_pred -----cccH-HH---HHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHhCC-CcccCCC--CCCCccEEEEEEeCC--HHH
Confidence 1110 01 12222222 2345678888999999999999997 7874332 22 77888742 234
Q ss_pred HHHHHHHHHhcCc
Q 011057 388 EFEVAELLRRFGW 400 (494)
Q Consensus 388 ~~~l~~~L~~~Gi 400 (494)
...+++.|.....
T Consensus 328 ~~~~~~~L~~~~~ 340 (409)
T 3jzl_A 328 MVAFAQAIQAASP 340 (409)
T ss_dssp HHHHHHHHHHTSS
T ss_pred HHHHHHHHHhcCc
Confidence 5678889988753
No 217
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.83 E-value=1.1e-18 Score=177.95 Aligned_cols=331 Identities=15% Similarity=0.021 Sum_probs=200.1
Q ss_pred cCCCCCcccccc----cCCChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhH
Q 011057 53 DGNPRLNLASFV----TTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSE 128 (494)
Q Consensus 53 ~~~~~~~~~~~~----~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~ 128 (494)
+++.++++.+.. ..+.+|.+.+++.+.+.... .+ . ...++..+++++|+++++ .. ..+++|+||++
T Consensus 54 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~-~~-~--~~~~~~~~l~~~la~~~~-~~-----~~v~~~~sgse 123 (434)
T 2epj_A 54 DGARIVDLVLAYGPLILGHKHPRVLEAVEEALARGW-LY-G--APGEAEVLLAEKILGYVK-RG-----GMIRFVNSGTE 123 (434)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCS-CC-S--SCCHHHHHHHHHHHHHHC-TT-----CEEEEESSHHH
T ss_pred CCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhCC-CC-C--CCCHHHHHHHHHHHHhCC-CC-----CEEEEeCCHHH
Confidence 455555555542 12357889999988887632 11 1 234556678888999884 22 24899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCC-cchHHHHHHH-------------HcCC------eeEEEeccCCcc
Q 011057 129 AIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGAN-VQVCWEKFAR-------------YFEV------ELKEVKLSEGYY 188 (494)
Q Consensus 129 a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~-~h~s~~~~~~-------------~~G~------~v~~v~~~~~~~ 188 (494)
|+..++.+++... + +++||+.+. .|.....+.. ..|+ .+..++.
T Consensus 124 A~~~al~~ar~~~-------~----~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~----- 187 (434)
T 2epj_A 124 ATMTAIRLARGYT-------G----RDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY----- 187 (434)
T ss_dssp HHHHHHHHHHHHH-------C----CCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-----
T ss_pred HHHHHHHHHHHhh-------C----CCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-----
Confidence 9999998864321 1 245665544 4432221110 1233 2444442
Q ss_pred ccCHHHHHHhhhh---CCeEEEEeeCCCCcccccC----HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccc
Q 011057 189 VMDPVKAVEMVDE---NTICVAAILGSTLNGEFED----VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEW 261 (494)
Q Consensus 189 ~~d~~~L~~~i~~---~t~~vv~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~ 261 (494)
.|+++|++++++ ++++|++...++++|.+.| +++|.++|++| |+++++|++|+++. ..+....
T Consensus 188 -~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~------g~~lI~DEv~~g~~---~g~~~~~ 257 (434)
T 2epj_A 188 -NDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRES------GALLILDEVVTGFR---LGLEGAQ 257 (434)
T ss_dssp -TCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHH------TCEEEEEETTTTTT---SSTTHHH
T ss_pred -CCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHc------CCEEEEEcchhcee---CCcchhh
Confidence 388999999874 5555555555567899888 99999999999 99999999999642 1111111
Q ss_pred -cccCCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHH
Q 011057 262 -DFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGY 340 (494)
Q Consensus 262 -~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~ 340 (494)
.++. ..|.+++ +|++.++..+|+++.+++ .+ +.+....... ...+ ++.+.....+..++++.+..
T Consensus 258 ~~~~~-~~di~s~--sK~l~~G~~~G~v~~~~~-~~-~~l~~~~~~~----~~~t--~~~~~~~~aa~~a~l~~~~~--- 323 (434)
T 2epj_A 258 GYFNI-EGDIIVL--GKIIGGGFPVGAVAGSRE-VM-SLLTPQGKVF----NAGT--FNAHPITMAAGLATLKALEE--- 323 (434)
T ss_dssp HHHTC-CCSEEEE--EGGGGTTSSCEEEEECHH-HH-TTBTTTSSBC----CCCT--TTTCHHHHHHHHHHHHHHHH---
T ss_pred HHhCC-CCCeeee--cchhcCCcceeeeeecHH-HH-HhhccCCCcc----cCCC--CCcCHHHHHHHHHHHHHHHh---
Confidence 1121 3676654 598877677899887642 22 2111100000 0011 12233444455556665543
Q ss_pred HHHHHHHHHHHHHHHHHHhhC----CCeEEeecCCCccEEEEEecCCC-----------CCCHHHHHHHHHhcCceeecc
Q 011057 341 RNVMENCHENAMVLKEGLEKT----GRFNIVSKDEGVPLVAFSLKDNK-----------RHDEFEVAELLRRFGWIVPAY 405 (494)
Q Consensus 341 ~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~~~~~v~f~~~~~~-----------~~~~~~l~~~L~~~Gi~v~~~ 405 (494)
++..++..++++++.+.|+++ + +.....+ ..+++.+.+.... ..+..++.++|.++|+.+...
T Consensus 324 ~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~ 401 (434)
T 2epj_A 324 EPVYSVSREAAKALEEAASEVLDRTG-LPYTINR-VESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPS 401 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHT-CCEEEEE-ETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSS
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhCC-CcEEEEE-eeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEecc
Confidence 345677778888888888775 4 3221122 3467888875310 113567999999999986432
Q ss_pred ccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHH
Q 011057 406 TMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHEL 444 (494)
Q Consensus 406 ~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l 444 (494)
. ...+|+ +..+++++++++++.|+++++++
T Consensus 402 ~-------~~~~~~--~~~~t~e~i~~~l~~l~~~l~~~ 431 (434)
T 2epj_A 402 N-------LEAVFT--GLPHQGEALEIAVEGLRSSLKTV 431 (434)
T ss_dssp T-------TSCEEC--CTTCSHHHHHHHHHHHHHHHHHH
T ss_pred C-------CCcEEE--eccCCHHHHHHHHHHHHHHHHHH
Confidence 1 112444 45779999999999999998775
No 218
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.82 E-value=8e-18 Score=172.30 Aligned_cols=328 Identities=14% Similarity=0.020 Sum_probs=194.0
Q ss_pred ChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 011057 68 MEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA 147 (494)
Q Consensus 68 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~ 147 (494)
.+|.+.+++.+.++... .+....+..+...+++++|+++++.+. ...+++|+||+||+..++++++...
T Consensus 78 ~~p~v~~A~~~~~~~~~-~~~~~~~~~~~~~~la~~l~~~~~~~~----~~~v~~~~sGseA~~~Alk~a~~~~------ 146 (451)
T 3oks_A 78 SAPKVVEAVRSQVGDFT-HTCFMVTPYEGYVAVCEQLNRLTPVRG----DKRSALFNSGSEAVENAVKIARSHT------ 146 (451)
T ss_dssp TCHHHHHHHHHHHTTCS-CCTTTTSCCHHHHHHHHHHHHHSSCCS----SEEEEEESSHHHHHHHHHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHhcc-cccCCccCCHHHHHHHHHHHHhCCcCC----CCEEEEeCcHHHHHHHHHHHHHHhc------
Confidence 47889999988886542 222222344566678889999987432 1359999999999999998886531
Q ss_pred cCCCCCCCeEEeC-CCcchHHHHHHHHcC-------------CeeEEEeccCC--c----------cccCHHHHHHhhh-
Q 011057 148 EGKPFDKPNIVTG-ANVQVCWEKFARYFE-------------VELKEVKLSEG--Y----------YVMDPVKAVEMVD- 200 (494)
Q Consensus 148 ~g~~~~~~~vi~~-~~~h~s~~~~~~~~G-------------~~v~~v~~~~~--~----------~~~d~~~L~~~i~- 200 (494)
| +.+|++. ...|.....+....| ..+..++.... + ...+++.+++.+.
T Consensus 147 -g----~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~ 221 (451)
T 3oks_A 147 -H----KPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDK 221 (451)
T ss_dssp -C----CCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHH
T ss_pred -C----CCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHh
Confidence 1 2456554 445544433333322 14666765411 0 0113455555544
Q ss_pred ---hCCeEEEEeeCCCCc-ccccC----HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEE
Q 011057 201 ---ENTICVAAILGSTLN-GEFED----VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSIN 272 (494)
Q Consensus 201 ---~~t~~vv~~~~~~~t-G~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~ 272 (494)
+++.+++++.|++++ |.+.+ +++|.++|++| |+++++|++|.++.. .......+..-...|.++
T Consensus 222 ~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~------g~~lI~DEv~~g~g~--~g~~~~~~~~~~~pdi~t 293 (451)
T 3oks_A 222 QIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKN------DVVFIADEVQTGFAR--TGAMFACEHEGIDPDLIV 293 (451)
T ss_dssp HTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSGGGGGTCCCSEEE
T ss_pred hcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHc------CCEEEEEecccCCCc--cccchhhhhcCCCCCeee
Confidence 345556666666655 66655 99999999999 999999999986421 111111111111357775
Q ss_pred EcCcccCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHH
Q 011057 273 VSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAM 352 (494)
Q Consensus 273 ~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~ 352 (494)
++ |.+.+++++|+++.+++ .+ +.+.. .....+ ++.+.....+..++++.+..+ +..++..++.+
T Consensus 294 ~s--K~l~~G~~iG~v~~~~~-~~-~~~~~-------~~~~~t--~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~ 357 (451)
T 3oks_A 294 TA--KGIAGGLPLSAVTGRAE-IM-DSPHV-------SGLGGT--YGGNPIACAAALATIETIESE---GLVARAQQIEK 357 (451)
T ss_dssp EC--GGGGTTSSCEEEEEEHH-HH-TCSCT-------TSBCCS--SSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHH
T ss_pred eh--hhhhCCcceEEEEECHH-HH-hhhcC-------CCcCCC--CCCCHHHHHHHHHHHHHHhhh---hHHHHHHHHHH
Confidence 54 98877788999887542 21 11100 000111 122233334444555544343 34455555556
Q ss_pred HHHHHHhh----CCCeEEeecCCCccEEEEEecC-----CCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEecc
Q 011057 353 VLKEGLEK----TGRFNIVSKDEGVPLVAFSLKD-----NKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIRE 423 (494)
Q Consensus 353 ~l~~~L~~----~~~~~~~~~~~~~~~v~f~~~~-----~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~ 423 (494)
++++.|++ .+.+..+.. ...++.+.+.. +...+...+.+.|.++|+.+.... ....++|+++..
T Consensus 358 ~l~~~L~~~~~~~~~~~~~~~--~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~iRi~~~~ 430 (451)
T 3oks_A 358 IMKDRLGRLQAEDDRIGDVRG--RGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCG-----TYGNVVRFLPPL 430 (451)
T ss_dssp HHHHHHHHHHHHCTTEEEEEE--ETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEEC-----TTSCEEEECCCT
T ss_pred HHHHHHHHHHhhCCCeEEEEE--eeEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCC-----CCCCEEEEECCC
Confidence 66665554 454433332 34577777632 111235678999999999874421 123579999888
Q ss_pred CCChHHHHHHHHHHHHHHH
Q 011057 424 DFSRTLAERLVLDITKVLH 442 (494)
Q Consensus 424 ~~t~~~id~~i~~l~~~~~ 442 (494)
.+++++++++++.|+++++
T Consensus 431 ~~t~e~i~~~l~~l~~~l~ 449 (451)
T 3oks_A 431 SIGDDLLNEGLDVLEEVLR 449 (451)
T ss_dssp TCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 8899999999999988875
No 219
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.82 E-value=1.7e-18 Score=176.01 Aligned_cols=331 Identities=12% Similarity=0.003 Sum_probs=196.2
Q ss_pred cCCCCCccccccc----CCChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhH
Q 011057 53 DGNPRLNLASFVT----TWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSE 128 (494)
Q Consensus 53 ~~~~~~~~~~~~~----~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~ 128 (494)
+|+.++.+.+... .+.+|.+.+++.+.++.... +. + ..+...+++++++++++ +. ..+++|+||++
T Consensus 50 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~-~--~~~~~~~la~~l~~~~~-~~-----~~v~~~~ggse 119 (427)
T 3fq8_A 50 DGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTS-FG-A--PCALENVLAEMVNDAVP-SI-----EMVRFVNSGTE 119 (427)
T ss_dssp TSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSC-CS-S--CCHHHHHHHHHHHHHST-TC-----SEEEEESSHHH
T ss_pred CCCEEEECCCchhhhccCCCCHHHHHHHHHHHHhCCC-cC-C--CCHHHHHHHHHHHHhCC-CC-----CEEEEeCCHHH
Confidence 4555555544321 13478899999888876422 21 1 34566678889999987 32 35999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCC-CcchHHHHHHHHcCC-------------------eeEEEeccCCcc
Q 011057 129 AIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGA-NVQVCWEKFARYFEV-------------------ELKEVKLSEGYY 188 (494)
Q Consensus 129 a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~-~~h~s~~~~~~~~G~-------------------~v~~v~~~~~~~ 188 (494)
|+..+++.++... | +++|++.. ..|.....+....|. .+..++.
T Consensus 120 a~~~al~~a~~~~-------~----~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 183 (427)
T 3fq8_A 120 ACMAVLRIMRAYT-------G----RDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY----- 183 (427)
T ss_dssp HHHHHHHHHHHHH-------C----CCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEET-----
T ss_pred HHHHHHHHHHHhh-------C----CCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCC-----
Confidence 9999997775421 1 24566544 444322222111111 1223331
Q ss_pred ccCHHHHHHhhhh---CCeEEEEeeCCCCcccccC----HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccc
Q 011057 189 VMDPVKAVEMVDE---NTICVAAILGSTLNGEFED----VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEW 261 (494)
Q Consensus 189 ~~d~~~L~~~i~~---~t~~vv~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~ 261 (494)
.|+++|++++++ ++++|++...++++|.+.| +++|.++|++| |+++++|++|+++ . .......
T Consensus 184 -~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~------~~~li~DEv~~g~-~--~g~~~~~ 253 (427)
T 3fq8_A 184 -NDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEH------DALLVFDEVITGF-R--IAYGGVQ 253 (427)
T ss_dssp -TCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHT------TCEEEEECTTTBT-T--TBTTHHH
T ss_pred -CCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEecccccc-c--cCcchhh
Confidence 189999999986 5667777777778899988 99999999999 9999999999865 1 1111111
Q ss_pred cccCCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHH
Q 011057 262 DFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYR 341 (494)
Q Consensus 262 ~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~ 341 (494)
+......|.++++ |.+.++.++|+++.+++ .+ +.+.....+.. ..+ .+.+.....+..++++.+..+
T Consensus 254 ~~~~~~~di~t~s--K~~~~G~~~G~~~~~~~-~~-~~~~~~~~~~~----~~t--~~~~~~~~aa~~aal~~~~~~--- 320 (427)
T 3fq8_A 254 EKFGVTPDLTTLG--KIIGGGLPVGAYGGKRE-IM-QLVAPAGPMYQ----AGT--LSGNPLAMTAGIKTLELLRQP--- 320 (427)
T ss_dssp HHTTCCCSEEEEC--GGGGTTSSCEEEEECHH-HH-TTBTTTSSBCC----CCT--TTTCHHHHHHHHHHHHHHTST---
T ss_pred HhcCCCCChhhhh--hhhhCCcceEEEEEcHH-HH-HhhccCCCccc----cCC--CCcCHHHHHHHHHHHHHHHhc---
Confidence 1111135666655 88877677899876432 22 11111000000 001 122334444555556555443
Q ss_pred HHHHHHHHHHHHHHHHHhhC----CCeEEeecCCCccEEEEEecCCCCC-----------CHHHHHHHHHhcCceeeccc
Q 011057 342 NVMENCHENAMVLKEGLEKT----GRFNIVSKDEGVPLVAFSLKDNKRH-----------DEFEVAELLRRFGWIVPAYT 406 (494)
Q Consensus 342 ~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~~~~~v~f~~~~~~~~-----------~~~~l~~~L~~~Gi~v~~~~ 406 (494)
+..++..++.+++++.|+++ + +...... ...++.+.+...... ...++.+.|.++|+.+....
T Consensus 321 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~ 398 (427)
T 3fq8_A 321 GTYEYLDQITKRLSDGLLAIAQETG-HAACGGQ-VSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQ 398 (427)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTT-CCCEEEE-ETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSST
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCC-CCeEEEE-eeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCC
Confidence 34556666666666666553 3 2111111 345677776432111 14578999999999864321
Q ss_pred cCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHH
Q 011057 407 MPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHE 443 (494)
Q Consensus 407 ~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~ 443 (494)
. .|+++...+|+++++++++.|++++++
T Consensus 399 -------~--~r~~~~~~~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 399 -------F--EAGFTSLAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp -------T--SCEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -------C--CCEEeeCcCCHHHHHHHHHHHHHHHHh
Confidence 1 255566778999999999999988764
No 220
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.82 E-value=1.2e-18 Score=182.15 Aligned_cols=360 Identities=13% Similarity=0.014 Sum_probs=211.5
Q ss_pred cccccccCCChHHHHHHHHHHhcccCCCCCCChhhHHHHHHH-HHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHH
Q 011057 59 NLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRC-VNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAF 137 (494)
Q Consensus 59 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~-~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~ 137 (494)
+|+.+.+..+++.+.+++.+.+.. ..|...++...+.+++ ..++.+..+......+...+++|+|+++++.+++.++
T Consensus 108 ~l~~g~~~~~~~~~~~al~~~~~~--~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~~~~l 185 (546)
T 2zy4_A 108 SYVRDQLGLDPAAFLHEMVDGILG--CNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESL 185 (546)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHT--CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHHHHH
T ss_pred ecccCCCCCCChHHHHHHHHhhhc--CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHHHHHh
Confidence 344444445556666666655532 3344444555666554 4455554433110001145899999999999887764
Q ss_pred HHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHc--CCeeEEEeccCC-ccccCHHHHHHhhhhCCeEEEEeeCCCC
Q 011057 138 KRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYF--EVELKEVKLSEG-YYVMDPVKAVEMVDENTICVAAILGSTL 214 (494)
Q Consensus 138 ~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~--G~~v~~v~~~~~-~~~~d~~~L~~~i~~~t~~vv~~~~~~~ 214 (494)
..+. .-..++.|+++.++|..+..++... |++++.++++++ ++.+|+++|++++++++++|++++++||
T Consensus 186 ~~~~--------l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~p~NP 257 (546)
T 2zy4_A 186 KLNG--------LLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDPAIKIFFCVNPSNP 257 (546)
T ss_dssp HHTT--------SSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGSTTEEEEEEESSCSS
T ss_pred hhhh--------cCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCCCCeEEEEECCCCC
Confidence 2110 0011368999999999998886654 577888888643 3679999999988888899999999999
Q ss_pred cccccC---HHHHHHHH--HHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccC-CcCCceEEE
Q 011057 215 NGEFED---VKLLNDLL--AEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYG-LVYAGIGWV 288 (494)
Q Consensus 215 tG~~~~---l~~I~~la--~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l-~~p~g~G~~ 288 (494)
||.+.+ +++|.++| +++ ++++++|++|+.+... ..... .. ..+.+++..+++|++ +++.++|++
T Consensus 258 tG~~~~~~~l~~l~~~a~~~~~------~~~ii~De~y~~~~~~--~~s~~-~~-~~~~~i~~~S~SK~~g~~GlRiG~~ 327 (546)
T 2zy4_A 258 PSVKMDQRSLERVRNIVAEHRP------DLMILTDDVYGTFADD--FQSLF-AI-CPENTLLVYSFSKYFGATGWRLGVV 327 (546)
T ss_dssp SCBCCCHHHHHHHHHHHHHTCT------TCEEEEECTTGGGSTT--CCCHH-HH-CGGGEEEEEESTTTTTCGGGCEEEE
T ss_pred CCccCCHHHHHHHHHHHHhccC------CcEEEEeCcchhhccc--CcCHH-Hh-CCCCEEEEEeCccccCCCCcceEEE
Confidence 999966 56678888 677 9999999999976421 11110 11 123567788999988 467789999
Q ss_pred EEeCCCCcccccccc---------cCCCCC------------------CCCCcccccCcchHHHH-HHHHHHHHhc--Hh
Q 011057 289 IWRNKEDLPEELIFH---------INYLGA------------------DQPTFTLNFSKGSSQVI-AQYYQLIRLG--FE 338 (494)
Q Consensus 289 ~~~~~~~~~~~~~~~---------~~y~~~------------------~~~~~~~~~s~~~~~~~-a~~~al~~l~--~~ 338 (494)
+..++..+....... ..|... ........+........ ++.+...++. ..
T Consensus 328 ~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~~ 407 (546)
T 2zy4_A 328 AAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADE 407 (546)
T ss_dssp EEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTCH
T ss_pred EECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccHH
Confidence 987642221110000 001000 00000000111111111 1111122332 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCccE-EEEEecC------CC--------CCC-HHHHHHHHHhcCcee
Q 011057 339 GYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPL-VAFSLKD------NK--------RHD-EFEVAELLRRFGWIV 402 (494)
Q Consensus 339 g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~-v~f~~~~------~~--------~~~-~~~l~~~L~~~Gi~v 402 (494)
..++..+.+.++++++.+.|. .+ +... ++ ..++ +.+.+.. .. +.+ ...+.+.|.++||.+
T Consensus 408 ~~~~~r~~~~~r~~~l~~~L~-~~-~~~~-~~-~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~v 483 (546)
T 2zy4_A 408 YKHTLKQLIRRRETTLYRELG-MP-PLRD-EN-AVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVL 483 (546)
T ss_dssp HHHHHHHHHHHHHHHHHGGGT-SS-CCCC-TT-BCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CC-cccC-CC-CeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEEE
Confidence 345556666677777888875 43 4322 22 3444 3455421 00 012 344677888999988
Q ss_pred eccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHHh
Q 011057 403 PAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELD 445 (494)
Q Consensus 403 ~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~ 445 (494)
........ +..++|+++. ..+.++++++++.|+++++++.
T Consensus 484 ~pG~~F~~--~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~~~ 523 (546)
T 2zy4_A 484 LPGRGFGS--NRPSGRASLA-NLNEYEYAAIGRALRKMADELY 523 (546)
T ss_dssp EESSCTTC--SSCEEEEESS-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred eCccccCC--CCCeEEEEec-cCCHHHHHHHHHHHHHHHHHHH
Confidence 55433321 3467999997 4578889999999998877665
No 221
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.81 E-value=1.1e-18 Score=175.41 Aligned_cols=325 Identities=13% Similarity=0.055 Sum_probs=199.2
Q ss_pred CCcccccccCCChH-HHHHHHHHHh--cc--cCCCCCCChhh-----HHHHHHHHHHHHHHhCCCCCCCCCcceeeecCh
Q 011057 57 RLNLASFVTTWMEP-ECDKLMMAAI--NK--NYVDMDEYPVT-----TELQNRCVNIIARLFNAPLEDSETAVGVGTVGS 126 (494)
Q Consensus 57 ~~~~~~~~~~~~~p-~~~~~~~~~~--~~--~~~~~~~~~~~-----~~le~~~~~~la~l~g~~~~~~~~~~~~~t~gg 126 (494)
.++|..+.+.++.| .+.+++.+.. .. ....|....+. .++++.+.+++. ..|.+... ...+++|+|+
T Consensus 24 ~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~--~~~i~~t~G~ 100 (391)
T 3bwn_A 24 VVNLDHGDPTAYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATE--DRYIVVGTGS 100 (391)
T ss_dssp CEECSSCCCGGGHHHHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCS--SSEEEEEEHH
T ss_pred eeEcCCCCCCCCCCHHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCC--CCeEEEeCCh
Confidence 34555555544434 3444332222 11 22345444565 788877777766 34654321 1358999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCC----eEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhC
Q 011057 127 SEAIMLAGLAFKRKWQNKRKAEGKPFDKP----NIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDEN 202 (494)
Q Consensus 127 t~a~~~a~~a~~~~~~~~~~~~g~~~~~~----~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~ 202 (494)
++++.+++.++.+. | + +|+++.++|..+...++..|++++.++++.+. ++ .++
T Consensus 101 ~~al~~~~~~l~~~--------G-----d~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~--l~--------~~~ 157 (391)
T 3bwn_A 101 TQLCQAAVHALSSL--------A-----RSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGDAWG--FD--------KKG 157 (391)
T ss_dssp HHHHHHHHHHHHHT--------S-----SSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEEESTT--CC--------CCS
T ss_pred HHHHHHHHHHhcCC--------C-----CCCcceEEEcCCCchhHHHHHHHcCCeEEEecCCHHH--cC--------CCC
Confidence 99999888887542 1 4 89999999999999999999999999987542 22 256
Q ss_pred CeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccC-Cc
Q 011057 203 TICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYG-LV 281 (494)
Q Consensus 203 t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l-~~ 281 (494)
+++|++++++||||.+.+ +|++.++++ ++++++|++|+... ..+ .. .....+++..+++|.+ ++
T Consensus 158 ~k~v~l~~p~NPtG~~~~--~l~~~~~~~------~~~ii~De~y~~~~---~~~-l~---~~~~~~i~~~S~SK~~g~~ 222 (391)
T 3bwn_A 158 PYIELVTSPNNPDGTIRE--TVVNRPDDD------EAKVIHDFAYYWPH---YTP-IT---RRQDHDIMLFTFSKITGHA 222 (391)
T ss_dssp CEEEEEESSCTTTCCCCC--CCC-----C------CCEEEEECTTCSTT---TSC-CC---CCBCCSEEEEEHHHHHSCG
T ss_pred CEEEEECCCCCCCchhHH--HHHHHhhcC------CCEEEEeCCCCCCC---CCc-cc---cCCCCeEEEEechhhcCCC
Confidence 889999999999999975 454422222 49999999997421 111 11 1224677888999987 46
Q ss_pred CCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhc---------HhHHHHHHHHHHHHHH
Q 011057 282 YAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG---------FEGYRNVMENCHENAM 352 (494)
Q Consensus 282 p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~---------~~g~~~~~~~~~~~a~ 352 (494)
+.++|++++.++..+ ..+.....+. ..+.+.....++..+++... ...+++..+++.++++
T Consensus 223 GlRiG~~~~~~~~l~-~~l~~~~~~~---------~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (391)
T 3bwn_A 223 GSRIGWALVKDKEVA-KKMVEYIIVN---------SIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWE 292 (391)
T ss_dssp GGCEEEEEECCHHHH-HHHHHHHHHH---------HSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHH
T ss_pred ccceEEEEecCHHHH-HHHHHHhccc---------ccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHH
Confidence 677899987443322 2111111100 01111222222233332211 2346777888889999
Q ss_pred HHHHHHhhCCCeEEeecCC------------CccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEE
Q 011057 353 VLKEGLEKTGRFNIVSKDE------------GVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVV 420 (494)
Q Consensus 353 ~l~~~L~~~~~~~~~~~~~------------~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs 420 (494)
++.+.|++++++++..+.. ...++.+.+.. ...+.+.|.++||.+........ +..++|++
T Consensus 293 ~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~-----~~~~~~~l~~~gV~v~pg~~fg~--~~~~iRis 365 (391)
T 3bwn_A 293 KLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKE-----ETDLVSELRRHKVMSRAGERCGS--DKKHVRVS 365 (391)
T ss_dssp HHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESS-----SCCHHHHHHHTTEECEEGGGGTC--CTTEEEEE
T ss_pred HHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCc-----HHHHHHHHHHCCEEEccCCCCCC--CCCEEEEE
Confidence 9999999987676643211 11255666642 13567778899999865433321 34679999
Q ss_pred eccCCChHHHHHHHHHHHHHH
Q 011057 421 IREDFSRTLAERLVLDITKVL 441 (494)
Q Consensus 421 ~~~~~t~~~id~~i~~l~~~~ 441 (494)
++. +.++++++++.|++++
T Consensus 366 ~~~--~~e~i~~~~~~L~~~~ 384 (391)
T 3bwn_A 366 MLS--REDVFNVFLERLANMK 384 (391)
T ss_dssp SCS--CHHHHHHHHHHHHSCC
T ss_pred ecC--CHHHHHHHHHHHHHHH
Confidence 983 6777777777766554
No 222
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.81 E-value=1.6e-18 Score=174.75 Aligned_cols=251 Identities=16% Similarity=0.100 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcceee---ecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCC-CcchHHH----
Q 011057 97 QNRCVNIIARLFNAPLEDSETAVGVG---TVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGA-NVQVCWE---- 168 (494)
Q Consensus 97 e~~~~~~la~l~g~~~~~~~~~~~~~---t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~-~~h~s~~---- 168 (494)
.+++++.+|+++|.+. .++ +++|++|+..++.++.++ +++|+++. +.|..+.
T Consensus 75 ~~~Le~~lA~l~g~e~-------alv~p~~~sGt~Ai~~al~all~p-------------GD~Vl~~~~~~y~~~~~~~g 134 (427)
T 3i16_A 75 RDSLDAVYARVFNTES-------ALVRPHFVNGTHALGAALFGNLRP-------------GNTMLSVCGEPYDTLHDVIG 134 (427)
T ss_dssp HHHHHHHHHHHHTCSE-------EEEETTCCSHHHHHHHHHHHHCCT-------------TCEEEESSSSCCGGGHHHHT
T ss_pred HHHHHHHHHHHhCCcc-------eEEeCCCccHHHHHHHHHHHHhCC-------------CCEEEEeCCCccHHHHHHHh
Confidence 4456677999999974 455 889999998888776331 36888887 7776655
Q ss_pred -------HHHHHcCCeeEEEeccCCccccCHHHHHHhhh--hCCeEEEEee----CCCCcccccCHHHHHHHHHH--hhc
Q 011057 169 -------KFARYFEVELKEVKLSEGYYVMDPVKAVEMVD--ENTICVAAIL----GSTLNGEFEDVKLLNDLLAE--KNK 233 (494)
Q Consensus 169 -------~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~--~~t~~vv~~~----~~~~tG~~~~l~~I~~la~~--~~~ 233 (494)
..++..|++++.++++++ +.+|+++|+++++ ++|++|+++. ++|++|.+.|+++|+++|++ +
T Consensus 135 ~~~~~~~~~l~~~G~~~~~v~~~~~-g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~-- 211 (427)
T 3i16_A 135 ITENSNMGSLKEFGINYKQVDLKED-GKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRK-- 211 (427)
T ss_dssp CSCCCSSCCTGGGTCEEEECCCCTT-SSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCT--
T ss_pred ccccchHHHHHHcCCEEEEecCccC-CCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCC--
Confidence 334567999999998765 6899999999998 7899999999 99999999999999999999 8
Q ss_pred ccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcC--CceEEEEEeCCCCccccccc--ccCCCCC
Q 011057 234 ETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVY--AGIGWVIWRNKEDLPEELIF--HINYLGA 309 (494)
Q Consensus 234 ~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p--~g~G~~~~~~~~~~~~~~~~--~~~y~~~ 309 (494)
+++++||++|+.+.. ..... . .++|+++.++||+++++ ...|+++.+. ..+ +.+.. ....++.
T Consensus 212 ----g~~livD~a~~~~~~--~~~p~--~---~gaDiv~~S~sK~lgg~g~~~gG~i~~~~-~li-~~l~~~~~~~~~g~ 278 (427)
T 3i16_A 212 ----DIICFVDNCYGEFMD--TKEPT--D---VGADLIAGSLIKNIGGGIAPTGGYLAGTK-DCI-EKTSYRLTVPGIGG 278 (427)
T ss_dssp ----TSEEEEECTTTTTSS--SSCGG--G---GTCSEEEEETTSGGGTTTCCSCEEEEECH-HHH-HHHHHHHSCTTTGG
T ss_pred ----CCEEEEECCCccccc--cCCcc--c---cCCeEEEecCcccCCCCCCceEEEEEECH-HHH-HHHHHhcccCccCc
Confidence 999999999987642 11111 1 26899999999998663 2347776543 222 22211 1111110
Q ss_pred CCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCcc-----EEEEEecCCC
Q 011057 310 DQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVP-----LVAFSLKDNK 384 (494)
Q Consensus 310 ~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~-----~v~f~~~~~~ 384 (494)
. ..+... ..+.+++.+ .....+.++..+++.++.+.|+++| +++. +. ..+ +++|.+.+
T Consensus 279 ~--------~~~~~~--~a~~~l~gl--~~~~~r~~~~~~~a~~la~~L~~~g-~~V~-p~-~~~~~~~~i~~i~l~~-- 341 (427)
T 3i16_A 279 E--------CGSTFG--VVRSMYQGL--FLAPHISMEALKGAILCSRIMELAG-FEVM-PK-YDEKRSDIIQSIKFND-- 341 (427)
T ss_dssp G--------CCCCTT--CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTT-CEEE-SC-TTSCCSSSCEEEECSS--
T ss_pred c--------CCccHH--HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCC-Ceec-CC-CCCCCccEEEEEEECC--
Confidence 0 000011 122333222 3345778889999999999999998 7774 32 233 78888843
Q ss_pred CCCHHHHHHHHHhcCc
Q 011057 385 RHDEFEVAELLRRFGW 400 (494)
Q Consensus 385 ~~~~~~l~~~L~~~Gi 400 (494)
......+++.|.....
T Consensus 342 ~~~~~~f~~~l~~~~~ 357 (427)
T 3i16_A 342 KDKLIEFCKGIQTGSP 357 (427)
T ss_dssp HHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHhhcCc
Confidence 2245678888887643
No 223
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.81 E-value=4.4e-18 Score=174.44 Aligned_cols=332 Identities=14% Similarity=0.005 Sum_probs=197.3
Q ss_pred cCCCCCcccccc----cCCChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhH
Q 011057 53 DGNPRLNLASFV----TTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSE 128 (494)
Q Consensus 53 ~~~~~~~~~~~~----~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~ 128 (494)
+++.++++.+.. ..+.+|.+.+++.+.++... .+ ....+++.++.++++++++ .. ..+++|+||++
T Consensus 55 ~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~~-~~---~~~~~~~~~la~~l~~~~~-~~-----~~v~~~~gg~e 124 (453)
T 2cy8_A 55 DGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGV-QY---AASHPLEVRWAERIVAAFP-SI-----RKLRFTGSGTE 124 (453)
T ss_dssp TCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTTC-SS---CSSCHHHHHHHHHHHHHCT-TC-----SEEEEESCHHH
T ss_pred CCCEEEECcccHhhcccCCCCHHHHHHHHHHHHhCC-CC---CCCCHHHHHHHHHHHhhCC-CC-----CEEEEeCCHHH
Confidence 344445554432 12356889999988886532 22 2356788889999999885 32 35899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcch-HHHHHHHH----------cCCe------eEEEeccCCccccC
Q 011057 129 AIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQV-CWEKFARY----------FEVE------LKEVKLSEGYYVMD 191 (494)
Q Consensus 129 a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~-s~~~~~~~----------~G~~------v~~v~~~~~~~~~d 191 (494)
|+..++.+++... + +++||+.++.|. ....+... .|+. +..++ ..|
T Consensus 125 A~~~al~~ar~~~-------~----~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~d 187 (453)
T 2cy8_A 125 TTLLALRVARAFT-------G----RRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIR------PDD 187 (453)
T ss_dssp HHHHHHHHHHHHH-------C----CCEEEEECC----------------------------CGGGEEEEC------TTC
T ss_pred HHHHHHHHHHHhh-------C----CCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecC------CCC
Confidence 9999998864311 1 145666555443 22212111 2331 22232 148
Q ss_pred HHHHHHhhhh---CCeEEEEeeCCCCcccccC----HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccc-cc
Q 011057 192 PVKAVEMVDE---NTICVAAILGSTLNGEFED----VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEW-DF 263 (494)
Q Consensus 192 ~~~L~~~i~~---~t~~vv~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~ 263 (494)
+++|++++++ ++++|++...++++|.+.| +++|.++|++| |+++++|++|+++ . ....... .+
T Consensus 188 ~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~------g~~lI~DEv~~g~-~--~g~~~~~~~~ 258 (453)
T 2cy8_A 188 IEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQY------GALFILDEVISGF-R--VGNHGMQALL 258 (453)
T ss_dssp HHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHT------TCEEEEECTTTTT-T--TCTTHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEecCcccc-c--cCchhhhHHh
Confidence 9999999874 5556655444567898877 99999999999 9999999999864 1 1111111 11
Q ss_pred cCCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHH-hcHhHHHH
Q 011057 264 RLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIR-LGFEGYRN 342 (494)
Q Consensus 264 ~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~-l~~~g~~~ 342 (494)
+. ..|.++ +.|++.++.++|+++++++ .+ +.+... ..... ......+.+.....+..++++. + . ++
T Consensus 259 ~~-~~di~s--~sK~l~~G~~~G~v~~~~~-~~-~~l~~~---~~~~~-~~~~t~~~n~~~~aa~~aal~~~~-~---~~ 325 (453)
T 2cy8_A 259 DV-QPDLTC--LAKASAGGLPGGILGGRED-VM-GVLSRG---SDRKV-LHQGTFTGNPITAAAAIAAIDTIL-E---DD 325 (453)
T ss_dssp TC-CCSEEE--EEGGGGTTSSCEEEEECHH-HH-TTSSSC---C----------CCCCHHHHHHHHHHHHHHH-H---TT
T ss_pred CC-CCcEEE--EChhhhCCcceEEEechHH-HH-HHhccc---cCCCc-eeCCCCCCCHHHHHHHHHHHHHHh-h---hh
Confidence 21 357664 4498877778899987642 22 111110 00000 0000122233444555556665 4 3 34
Q ss_pred HHHHHHHHHHHHHHHHhhC----CCeEEeecCCCccEEEEEecC-----C------------CCCCHHHHHHHHHhcCce
Q 011057 343 VMENCHENAMVLKEGLEKT----GRFNIVSKDEGVPLVAFSLKD-----N------------KRHDEFEVAELLRRFGWI 401 (494)
Q Consensus 343 ~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~~~~~v~f~~~~-----~------------~~~~~~~l~~~L~~~Gi~ 401 (494)
..++..++++++++.|+++ + +....++ ...++.+.+.. . ...+..++.++|.++|+.
T Consensus 326 ~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~ 403 (453)
T 2cy8_A 326 VCAKINDLGQFAREAMNHLFARKG-LNWLAYG-RFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVD 403 (453)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEC-CTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCC-CcEEEEE-eeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHCCeE
Confidence 5667778888888888765 4 3222222 45688888753 1 011256799999999998
Q ss_pred eeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHHhc
Q 011057 402 VPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDS 446 (494)
Q Consensus 402 v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~~ 446 (494)
+. |. + .+|+ +..+++++++++++.|+++++++.+
T Consensus 404 v~----~~---~--~~~l--~~~~t~~~i~~~l~~l~~~l~~~~~ 437 (453)
T 2cy8_A 404 IG----GR---G--SVFL--SAQHEREHVEHLVTTFDRVLDRLAD 437 (453)
T ss_dssp CB----TT---T--EEEC--CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred Ee----CC---C--CEEe--eccCCHHHHHHHHHHHHHHHHHHHh
Confidence 62 21 2 2554 4678999999999999999988765
No 224
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.80 E-value=1.6e-17 Score=169.05 Aligned_cols=334 Identities=13% Similarity=0.065 Sum_probs=187.6
Q ss_pred cCCCCCccccccc----CCChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhH
Q 011057 53 DGNPRLNLASFVT----TWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSE 128 (494)
Q Consensus 53 ~~~~~~~~~~~~~----~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~ 128 (494)
+|+.++.+.+... .+.+|.+.+++.+.++.... + .++ .+...+++++++++++ .. ..+++|+||++
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~-~-~~~--~~~~~~la~~l~~~~~-~~-----~~v~~~~sGse 120 (429)
T 4e77_A 51 DGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLS-F-GAP--TEMEVKMAQLVTDLVP-TM-----DMVRMVNSGTE 120 (429)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSC-C-SSC--CHHHHHHHHHHHHHST-TC-----SEEEEESSHHH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcc-c-CCC--CHHHHHHHHHHHhhCC-CC-----CEEEEeCcHHH
Confidence 4555555554332 13478899999988876432 1 122 2445567788999886 22 35999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEe-CCCcchHHHHHHHHcCCeeEE--EeccCCc-----------cccCHHH
Q 011057 129 AIMLAGLAFKRKWQNKRKAEGKPFDKPNIVT-GANVQVCWEKFARYFEVELKE--VKLSEGY-----------YVMDPVK 194 (494)
Q Consensus 129 a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~-~~~~h~s~~~~~~~~G~~v~~--v~~~~~~-----------~~~d~~~ 194 (494)
|+..+++.++... + +..|++ ....|.....++...|..... .+...+- ...|+++
T Consensus 121 a~~~al~~a~~~~-------~----~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 189 (429)
T 4e77_A 121 ATMSAIRLARGYT-------G----RDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLAS 189 (429)
T ss_dssp HHHHHHHHHHHHH-------C----CCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTTCHHH
T ss_pred HHHHHHHHHHHhh-------C----CCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHH
Confidence 9999998775421 1 245554 445565444322222211110 1110000 0128999
Q ss_pred HHHhhhh--CCeEEEEeeCCC-CcccccC----HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccc-cccCC
Q 011057 195 AVEMVDE--NTICVAAILGST-LNGEFED----VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEW-DFRLP 266 (494)
Q Consensus 195 L~~~i~~--~t~~vv~~~~~~-~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~ 266 (494)
|++++++ +...++++.+++ .+|.+.| +++|.++|+++ |+++|+|++|+++ . ....... .+++
T Consensus 190 le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~------~~lli~DEv~~g~-r--~g~~~~~~~~~~- 259 (429)
T 4e77_A 190 VRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEF------GALLIIDEVMTGF-R--VALAGAQDYYHV- 259 (429)
T ss_dssp HHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHH------TCEEEEEETTTBT-T--TBTTCHHHHTTC-
T ss_pred HHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEeccccCc-c--cCcchHHHhcCC-
Confidence 9999975 233444455555 5577777 99999999999 9999999999865 1 1111111 1111
Q ss_pred CceEEEEcCcccCCcCCceEEEEEeCCCCcccccccc-cCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHH
Q 011057 267 LVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFH-INYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVME 345 (494)
Q Consensus 267 ~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~ 345 (494)
..|.++++ |.+.++.++|+++.++. .+ +.+... ..+..+ .++.+.....+..++++.+..+ +..+
T Consensus 260 ~pdi~t~s--K~~~~G~~~G~~~~~~~-~~-~~l~~~~~~~~~~-------t~~~~~~~~aaa~aal~~~~~~---~~~~ 325 (429)
T 4e77_A 260 IPDLTCLG--KIIGGGMPVGAFGGRRE-VM-NALAPTGPVYQAG-------TLSGNPIAMAAGFACLTEISQV---GVYE 325 (429)
T ss_dssp CCSEEEEE--GGGGTTSCCEEEEECHH-HH-TTBTTTSSBCC---------CCCCCHHHHHHHHHHHHHHTST---THHH
T ss_pred CCCeeeec--ccccCCCCeEEEEECHH-HH-HHhccCCCccccC-------CCCCCHHHHHHHHHHHHHHHhc---CHHH
Confidence 34666544 88877778898876532 22 111110 001100 1223334455555666655433 4455
Q ss_pred HHHHHHHHHHHHHhhC----CCeEEeecCCCccEEEEEecCCCC------------CCHHHHHHHHHhcCceeeccccCC
Q 011057 346 NCHENAMVLKEGLEKT----GRFNIVSKDEGVPLVAFSLKDNKR------------HDEFEVAELLRRFGWIVPAYTMPA 409 (494)
Q Consensus 346 ~~~~~a~~l~~~L~~~----~~~~~~~~~~~~~~v~f~~~~~~~------------~~~~~l~~~L~~~Gi~v~~~~~~~ 409 (494)
+..++.+++++.|+++ + +.....+ ...++.+.+..... ....++.+.|.++|+.+....
T Consensus 326 ~~~~~~~~l~~~L~~~~~~~~-~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--- 400 (429)
T 4e77_A 326 TLTELTDSLATGLRHAAKEEN-IPLVVNH-VGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSA--- 400 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-CCCEEEE-ETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSST---
T ss_pred HHHHHHHHHHHHHHHHHHhCC-CceEEEE-eeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecC---
Confidence 6666666666666553 4 2211121 34677777753210 112688999999999864421
Q ss_pred CCCCceEEEEEeccCCChHHHHHHHHHHHHHHH
Q 011057 410 DAQHITVLRVVIREDFSRTLAERLVLDITKVLH 442 (494)
Q Consensus 410 ~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~ 442 (494)
...+|+ ...+|+++++++++.|+++++
T Consensus 401 ----~~~~~~--~~~~t~e~i~~~l~~l~~~l~ 427 (429)
T 4e77_A 401 ----FEAGFM--SLAHSNEDIQKTVNAARRCFA 427 (429)
T ss_dssp ----TSCEEC--CTTCCHHHHHHHHHHHHHHHT
T ss_pred ----CCCEEE--eccCCHHHHHHHHHHHHHHHH
Confidence 112444 466799999999999988765
No 225
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.80 E-value=2e-18 Score=177.72 Aligned_cols=345 Identities=12% Similarity=0.038 Sum_probs=204.3
Q ss_pred cCCCCCccccccc----CCChHHHHHHHHHHhccc----CCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeec
Q 011057 53 DGNPRLNLASFVT----TWMEPECDKLMMAAINKN----YVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTV 124 (494)
Q Consensus 53 ~~~~~~~~~~~~~----~~~~p~~~~~~~~~~~~~----~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ 124 (494)
+|+.++++.++.. .+.+|.+.+++.+.+... ...+.. ....++++++.++|+++++... ..+.+++
T Consensus 61 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~~~~-----~~v~f~~ 134 (472)
T 1ohv_A 61 DGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAPKGM-----SQLITMA 134 (472)
T ss_dssp TSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCCTTC-----CEEEEES
T ss_pred CCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCCCCc-----CEEEEeC
Confidence 4555555544332 245788999888765431 111211 2345677777777777664332 3499999
Q ss_pred ChhHHHHHHHHHHHHHHHHH-HHh------------cCCCCC--CCeEEeCC-CcchHHHHHHHHcCCe-----------
Q 011057 125 GSSEAIMLAGLAFKRKWQNK-RKA------------EGKPFD--KPNIVTGA-NVQVCWEKFARYFEVE----------- 177 (494)
Q Consensus 125 ggt~a~~~a~~a~~~~~~~~-~~~------------~g~~~~--~~~vi~~~-~~h~s~~~~~~~~G~~----------- 177 (494)
||+||+..++++++..+..+ +.. ...... +++||+.+ ..|.....++...|..
T Consensus 135 sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~ 214 (472)
T 1ohv_A 135 CGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFD 214 (472)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCC
T ss_pred CchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCC
Confidence 99999999999887543210 000 000011 25666544 5666555444444321
Q ss_pred eEEEeccCCc--------c-----ccCHHHHHHhhhh------CCeEEEEeeCCCCcccccC----HHHHHHHHHHhhcc
Q 011057 178 LKEVKLSEGY--------Y-----VMDPVKAVEMVDE------NTICVAAILGSTLNGEFED----VKLLNDLLAEKNKE 234 (494)
Q Consensus 178 v~~v~~~~~~--------~-----~~d~~~L~~~i~~------~t~~vv~~~~~~~tG~~~~----l~~I~~la~~~~~~ 234 (494)
+..+++.... + ..|+++|+++|++ ++++|++...++++|.+.| +++|.++|+++
T Consensus 215 ~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~--- 291 (472)
T 1ohv_A 215 WPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKH--- 291 (472)
T ss_dssp CCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHT---
T ss_pred CcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHh---
Confidence 1122321100 0 2378999999986 6777877777788999877 99999999999
Q ss_pred cCCCceEEEecccccccccccCCcccc-cccCC-CceEEEEcCcccCCcCCceEEEEEeCCCCcccccccccCCCCCCCC
Q 011057 235 TGWDTPIHVDAASGGFIAPFLYPELEW-DFRLP-LVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQP 312 (494)
Q Consensus 235 ~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~-~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~ 312 (494)
|+++|+|++|.++.. ....... .+++. .+|.++++ |++++ .|+++ + + .+.. ....+.
T Consensus 292 ---g~lli~DEv~~g~g~--~g~~~~~~~~gv~~~~Di~t~s--K~~l~---GG~~~-~-~-~~~~---~~~~~~----- 350 (472)
T 1ohv_A 292 ---GCAFLVDEVQTGGGS--TGKFWAHEHWGLDDPADVMTFS--KKMMT---GGFFH-K-E-EFRP---NAPYRI----- 350 (472)
T ss_dssp ---TCEEEEECTTTTTTT--TSSSSGGGGGCCSSCCSEEEEC--GGGSS---EEEEE-C-G-GGSC---SSSSSS-----
T ss_pred ---CCEEEEeCcccCCCC--CCCchhccccCCCCCCCEEEEc--ccccc---CCccC-c-h-hhcc---cccccc-----
Confidence 999999999985321 1110011 11211 27877665 87322 25554 2 2 1210 010000
Q ss_pred CcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhC----CC-eEEeecCCCccEEEEEecCCCCCC
Q 011057 313 TFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKT----GR-FNIVSKDEGVPLVAFSLKDNKRHD 387 (494)
Q Consensus 313 ~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~----~~-~~~~~~~~~~~~v~f~~~~~~~~~ 387 (494)
..+ .+.+.....+..++|+.+..+ ...++..+++++|+++|+++ ++ +..+.. ...++.|.+.. ..+
T Consensus 351 ~~T--~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~--~g~~~~~~~~~--~~~ 421 (472)
T 1ohv_A 351 FNT--WLGDPSKNLLLAEVINIIKRE---DLLSNAAHAGKVLLTGLLDLQARYPQFISRVRG--RGTFCSFDTPD--ESI 421 (472)
T ss_dssp CCS--SSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEE--ETTEEEEECSS--HHH
T ss_pred cCc--cCccHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecC--CceEEEEEeCC--hhH
Confidence 011 122234445555666666443 35677788888888888765 32 322222 34577776632 123
Q ss_pred HHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHH
Q 011057 388 EFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHE 443 (494)
Q Consensus 388 ~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~ 443 (494)
...+.++|.++|+.+... +..++|++++..+|+++++++++.|++++++
T Consensus 422 ~~~~~~~l~~~Gv~~~~~-------g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 470 (472)
T 1ohv_A 422 RNKLISIARNKGVMLGGC-------GDKSIRFRPTLVFRDHHAHLFLNIFSDILAD 470 (472)
T ss_dssp HHHHHHHHHHTTEECEEE-------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCeEEecC-------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 568999999999986431 2457999999899999999999999988764
No 226
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.80 E-value=2.3e-18 Score=173.69 Aligned_cols=249 Identities=15% Similarity=0.092 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcceee---ecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCC-CcchHHH----
Q 011057 97 QNRCVNIIARLFNAPLEDSETAVGVG---TVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGA-NVQVCWE---- 168 (494)
Q Consensus 97 e~~~~~~la~l~g~~~~~~~~~~~~~---t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~-~~h~s~~---- 168 (494)
.+++++.+|+++|.+. .++ +++|++|+..++.++.++ +++|++++ +.|....
T Consensus 76 ~~~Le~~lA~l~g~e~-------alv~p~~~sGt~A~~~al~all~p-------------GD~Vl~~~~~~y~~~~~~~g 135 (427)
T 3hvy_A 76 RDSLDRVYANIFNTES-------AFVRPHFVNGTHAIGAALFGNLRP-------------NDTMMSICGMPYDTLHDIIG 135 (427)
T ss_dssp HHHHHHHHHHHHTCSE-------EEEETTCCSHHHHHHHHHHHTCCT-------------TCEEEECSSSCCGGGHHHHT
T ss_pred HHHHHHHHHHHhCCCc-------eEEeCCCCcHHHHHHHHHHHhcCC-------------CCEEEEeCCCCchhHHHHhc
Confidence 4556677999999974 456 789999998887766321 36888887 7776554
Q ss_pred -------HHHHHcCCeeEEEeccCCccccCHHHHHHhhh--hCCeEEEEee----CCCCcccccCHHHHHHHHHH--hhc
Q 011057 169 -------KFARYFEVELKEVKLSEGYYVMDPVKAVEMVD--ENTICVAAIL----GSTLNGEFEDVKLLNDLLAE--KNK 233 (494)
Q Consensus 169 -------~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~--~~t~~vv~~~----~~~~tG~~~~l~~I~~la~~--~~~ 233 (494)
..++..|++++.+++ + ++.+|+++|+++++ ++|++|+++. ++|++|.+.|+++|+++|++ +
T Consensus 136 ~~~~~~~~~l~~~G~~~~~v~~-~-~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~-- 211 (427)
T 3hvy_A 136 MDDSKKVGSLREYGVKYKMVDL-K-DGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNE-- 211 (427)
T ss_dssp CCTTCCSCCTGGGTCEEEECCC-B-TTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCS--
T ss_pred cccchhhhHHHHcCCEEEEecC-C-CCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCC--
Confidence 334567999999988 3 36899999999998 7899999999 99999999999999999999 7
Q ss_pred ccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcC--CceEEEEEeCCCCcccccccc--cCCCCC
Q 011057 234 ETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVY--AGIGWVIWRNKEDLPEELIFH--INYLGA 309 (494)
Q Consensus 234 ~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p--~g~G~~~~~~~~~~~~~~~~~--~~y~~~ 309 (494)
|++++||++|+.+.. ..... . .++|+++.++||++.++ ...|+++.+ +..+ +.+... ...++.
T Consensus 212 ----g~~livD~a~~~~~~--~~~p~--~---~gaDiv~~S~sK~lgg~g~~~GG~i~~~-~~li-~~l~~~~~~~~~g~ 278 (427)
T 3hvy_A 212 ----NVIVFVDNCYGEFVE--EKEPT--D---VGADIIAGSLIKNIGGGIATTGGYIAGK-EEYV-TQATFRVTVPGIGG 278 (427)
T ss_dssp ----SSEEEEECTTCTTTS--SSCGG--G---GTCSEEEEETTSGGGTTTCCSCEEEEEC-HHHH-HHHHHHHSCTTTGG
T ss_pred ----CCEEEEECCcccccc--CCCCc--c---cCCeEEEECCcccccccccceEEEEEEC-HHHH-HHHHHHhhcCCccc
Confidence 999999999987642 11111 1 26899999999998763 223776654 3222 222111 111110
Q ss_pred CCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCcc-----EEEEEecCCC
Q 011057 310 DQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVP-----LVAFSLKDNK 384 (494)
Q Consensus 310 ~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~-----~v~f~~~~~~ 384 (494)
. ...+... .+.+++.+ .....+.++..+++.++.+.|+++| +++.+.+ .. +++|.+.+
T Consensus 279 ~-------~~~~~~~---a~~~~~gl--~~~~~r~~~~~~~a~~la~~L~~~g-~~V~p~~--~~~~~~li~~~~l~~-- 341 (427)
T 3hvy_A 279 E-------CGSTFGV---MRSLYEGL--FMAPHVTIEAVKGAVFCARIMELAG-FDVLPKY--NDKRTDIIQAIKFND-- 341 (427)
T ss_dssp G-------CCCCTTC---HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTT-CEEESCT--TSCCSSSEEEEECSS--
T ss_pred c-------cCCCHHH---HHHHHHhH--hHHHHHHHHHHHHHHHHHHHHHhCC-CeecCCC--CCCCceEEEEEeCCC--
Confidence 0 0010011 22222222 2335678888999999999999998 7774332 23 78888743
Q ss_pred CCCHHHHHHHHHhcC
Q 011057 385 RHDEFEVAELLRRFG 399 (494)
Q Consensus 385 ~~~~~~l~~~L~~~G 399 (494)
......+++.|....
T Consensus 342 ~~~~~~f~~~l~~~~ 356 (427)
T 3hvy_A 342 EKKLIDFIKGIQTAS 356 (427)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcccc
Confidence 223567888887754
No 227
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.78 E-value=3.5e-18 Score=173.14 Aligned_cols=255 Identities=16% Similarity=0.133 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCC-CcchHHHHHHH--
Q 011057 96 LQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGA-NVQVCWEKFAR-- 172 (494)
Q Consensus 96 le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~-~~h~s~~~~~~-- 172 (494)
..+++++++++++|.+... . .+++++|++|+..++.++.+ .+++|+++. +.|.++...+.
T Consensus 66 ~~~~l~~~la~~~g~~~~~---~-~i~~~sGt~Ai~~al~al~~-------------~Gd~Vl~~~~~~y~~~~~~~~l~ 128 (431)
T 3ht4_A 66 GRDTLEKVYADVFGAEAGL---V-RPQIISGTHAISTALFGILR-------------PGDELLYITGKPYDTLEEIVGVR 128 (431)
T ss_dssp HHHHHHHHHHHHTTCSEEC---C-BTTSCSHHHHHHHHHHTTCC-------------TTCEEEECSSSCCTTHHHHTTSS
T ss_pred hHHHHHHHHHHHhCCCccc---c-cceeeCHHHHHHHHHHHhCC-------------CCCEEEEeCCCCchhHHHHHhhc
Confidence 4667888999999997511 1 11244789999988766532 125788887 88988876653
Q ss_pred --------HcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEee----CCCCcccccCHHHHHHHHHH--hhcccCCC
Q 011057 173 --------YFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAIL----GSTLNGEFEDVKLLNDLLAE--KNKETGWD 238 (494)
Q Consensus 173 --------~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~----~~~~tG~~~~l~~I~~la~~--~~~~~~~~ 238 (494)
..|++++.++++++ +.+|+++|+++++++|++|+++. +++++|...++++|+++|++ + +
T Consensus 129 g~~~~~~~~~G~~~~~v~~~~~-~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~------~ 201 (431)
T 3ht4_A 129 GKGVGSFKEYNIGYNAVPLTEG-GLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKP------D 201 (431)
T ss_dssp SCSSSCSGGGTCEEEECCBCTT-SSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCT------T
T ss_pred ccccchHHHcCCEEEEeCCCCC-CCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCC------C
Confidence 47899999999875 78999999999999999999986 66777888999999999999 8 9
Q ss_pred ceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCc---CCceEEEEEeCCCCccccccc--ccCCCCCCCCC
Q 011057 239 TPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLV---YAGIGWVIWRNKEDLPEELIF--HINYLGADQPT 313 (494)
Q Consensus 239 ~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~---p~g~G~~~~~~~~~~~~~~~~--~~~y~~~~~~~ 313 (494)
+++++|++|+.+... .. ... .++|+++.+++|++++ +.| |+++.++ ..+ +.+.. .....+....
T Consensus 202 ~~livDea~~~~~~~--~~--~~~---~g~Di~~~S~sK~lgg~~~~~G-G~v~~~~-~li-~~l~~~~~~~~~g~~~~- 270 (431)
T 3ht4_A 202 VVVFVDNCYGEFIEE--QE--PCH---VGADLMAGSLIKNPGGGIVKTG-GYIVGKE-QYV-EACAYRLTSPGIGAEAG- 270 (431)
T ss_dssp CEEEEECTTCTTSSS--CC--GGG---TTCSEEEEETTSGGGTTTCSSC-EEEEECH-HHH-HHHHHHHSCTTTTTSCS-
T ss_pred CEEEEeCCChhhccC--CC--ccc---cCCeEEEcCccccCCCCCCCce-EEEEecH-HHH-HHHHHHhccCCcccccC-
Confidence 999999999986421 11 111 2689999999999755 555 7777643 222 22211 1111111100
Q ss_pred cccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCC---CccEEEEEecCCCCCCHHH
Q 011057 314 FTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDE---GVPLVAFSLKDNKRHDEFE 390 (494)
Q Consensus 314 ~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~---~~~~v~f~~~~~~~~~~~~ 390 (494)
.+.. . ...+...+ ..+..+.++..+++.++.+.|++++ +++...+. ..-++.+.+.. ......
T Consensus 271 ----~~~~-~-~~~~~~~l-----~~~~~~~~~~~~~a~~l~~~L~~~g-~~v~p~~~~~~~~li~~i~l~~--~~~~~~ 336 (431)
T 3ht4_A 271 ----ASLY-S-LQEMYQGF-----FLAPHVAGQALKGAIFTAAFLEKLG-MNTSPAWNAPRTDLIQSVQFDD--KDRMIA 336 (431)
T ss_dssp ----CCCS-C-SHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHT-CCEESCTTSCCSSSCCEEECCC--HHHHHH
T ss_pred ----ccHH-H-HHHHHhHh-----hhHHHHHHHHHHHHHHHHHHHHhCc-CEecCCCCCCCccEEEEEEeCC--HHHHHH
Confidence 0010 0 11122222 2235677888899999999999997 77743221 11167777742 234567
Q ss_pred HHHHHHhcC
Q 011057 391 VAELLRRFG 399 (494)
Q Consensus 391 l~~~L~~~G 399 (494)
+++.|.+..
T Consensus 337 ~~~~l~~~~ 345 (431)
T 3ht4_A 337 FCQAIQYAS 345 (431)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHhcC
Confidence 888888764
No 228
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.77 E-value=4.9e-17 Score=163.75 Aligned_cols=356 Identities=12% Similarity=0.082 Sum_probs=216.8
Q ss_pred HHHHHHHHHhhhhcCCCCCccccccc------CCChHHHHHHHHHHhcccCC-CCCCChhhHHHHHHHHHHHHHHhCCCC
Q 011057 40 EAAYQIINDELMLDGNPRLNLASFVT------TWMEPECDKLMMAAINKNYV-DMDEYPVTTELQNRCVNIIARLFNAPL 112 (494)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~le~~~~~~la~l~g~~~ 112 (494)
+.++...+. +..+.+|.+||+-+++ ++..|.|+++...+++.+.. .|....|..++.+.+.+++ +|-..
T Consensus 30 d~i~~l~~~-~~~d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~aia~~~---~g~~~ 105 (420)
T 4h51_A 30 DVIFDLAKR-AAAAKGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFIDEAVKII---YGNTV 105 (420)
T ss_dssp CHHHHHHHH-HHHCCSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHH---HC---
T ss_pred ChHHHHHHH-HhcCCCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHHHHHHHHh---cCCCc
Confidence 345554443 4456777888776642 23347788887777766544 3767778888887765544 34322
Q ss_pred CCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCee-EEEec-cCCcccc
Q 011057 113 EDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVEL-KEVKL-SEGYYVM 190 (494)
Q Consensus 113 ~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v-~~v~~-~~~~~~~ 190 (494)
.. .....+.|.|||.|+..++..+.+.+ ...+++|+++++++..+...++..|++. ...+. +++++.+
T Consensus 106 ~~-~~~~~~qt~ggtga~~~a~~~l~~~~---------~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~ 175 (420)
T 4h51_A 106 EL-ENLVAVQTLSGTGAVSLGAKLLTRVF---------DAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTVSL 175 (420)
T ss_dssp CG-GGEEEEEEEHHHHHHHHHHHHHTTTS---------CTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGTEE
T ss_pred cc-cccceeeecCchHHHHHHHHHHHHhc---------CCCCCEEEEecCCchhHHHHHHHcCCeEEEeeccccccccCC
Confidence 11 12345668899999988877664321 1123689999999999999999999974 44444 3445678
Q ss_pred CHHHHHHhhh---hCCeEEEEeeCCCCcccc---cCHHHHHHHHHHhhcccCCCceEEEeccccccccccc-CCcc--cc
Q 011057 191 DPVKAVEMVD---ENTICVAAILGSTLNGEF---EDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFL-YPEL--EW 261 (494)
Q Consensus 191 d~~~L~~~i~---~~t~~vv~~~~~~~tG~~---~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~-~~~~--~~ 261 (494)
|.+.+.+.+. +++++++.+.++||||.. +.+++|+++|+++ +++++.|++|.++...-. .+.. ..
T Consensus 176 d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~------~~~~~~D~~Y~~~~~~~~~~~~~~~~~ 249 (420)
T 4h51_A 176 NFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAK------HHQVFFDSAYQGYASGSLDTDAYAARL 249 (420)
T ss_dssp CHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEEESCTTTTTSCHHHHTHHHHH
T ss_pred CHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc------CceEeeehhhhhhccCCcccchHHHHh
Confidence 9998888775 356778888899999998 4578899999999 999999999987642100 0000 00
Q ss_pred ccc-CCCceEEEEcCcc-cCCcCCceEEEEEeCCCCcccccccc--cCCC-CCCCCCcccccCcchHHHHHHHHHHHHhc
Q 011057 262 DFR-LPLVKSINVSGHK-YGLVYAGIGWVIWRNKEDLPEELIFH--INYL-GADQPTFTLNFSKGSSQVIAQYYQLIRLG 336 (494)
Q Consensus 262 ~~~-~~~~D~~~~~~hK-~l~~p~g~G~~~~~~~~~~~~~~~~~--~~y~-~~~~~~~~~~~s~~~~~~~a~~~al~~l~ 336 (494)
... ...+ ++..++.| +++.++++|++++...... ...... .... ... . ... ...++..+...+.
T Consensus 250 ~~~~~~~~-i~~~s~SK~~~~~G~RvG~~~~~~~~~~-~~~~~~~~l~~~~r~~-----~-s~~---p~~~a~~~~~~l~ 318 (420)
T 4h51_A 250 FARRGIEV-LLAQSFSKNMGLYSERAGTLSLLLKDKT-KRADVKSVMDSLIREE-----Y-TCP---PAHGARLAHLILS 318 (420)
T ss_dssp HHHTTCCC-EEEEECTTTSCCGGGCEEEEEEECSCHH-HHHHHHHHHHHHHHTT-----T-SSC---CHHHHHHHHHHHH
T ss_pred HHhhCceE-EEEeccccccccccCceEEEEecccCHH-HHHHHHHHHHHhhhcc-----c-Ccc---hHHHHHHHHHHhc
Confidence 001 1223 33345556 6678899999987654221 100000 0000 000 0 111 1122222222221
Q ss_pred --------HhHHHHHHHHHHHHHHHHHHHHhhCCC---eEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeecc
Q 011057 337 --------FEGYRNVMENCHENAMVLKEGLEKTGR---FNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAY 405 (494)
Q Consensus 337 --------~~g~~~~~~~~~~~a~~l~~~L~~~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~ 405 (494)
...++.+.+++.++++.|.+.|++.+. |..+.+ +.++++|. +++. +.+++|.++||++
T Consensus 319 d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~--q~GmF~~~-----gls~-e~v~~L~e~~Vy~--- 387 (420)
T 4h51_A 319 NNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVIN--QIGMFSFL-----GLSK-AQCEYCQNHNIFI--- 387 (420)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHH--CCSSEEEC-----CCCH-HHHHHHHHTTEEC---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecC--CCceEEec-----CcCH-HHHHHHHhCCEEE---
Confidence 234566777888899999999998752 322333 23555542 2344 4568899999864
Q ss_pred ccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHHhc
Q 011057 406 TMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDS 446 (494)
Q Consensus 406 ~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~~ 446 (494)
.| .+ ||++.. .+.++|++++++|.++++++.+
T Consensus 388 -~~---~g----Ris~Ag-l~~~ni~~~a~aI~~vvr~i~r 419 (420)
T 4h51_A 388 -TV---SG----RANMAG-LTHETALMLAQTINDAVRNVNR 419 (420)
T ss_dssp -CT---TC----EEEGGG-CCHHHHHHHHHHHHHHHC----
T ss_pred -cC---CC----EEEecc-CCHHHHHHHHHHHHHHHHHhhc
Confidence 22 12 999864 5778899999999998877754
No 229
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.77 E-value=3.9e-18 Score=173.23 Aligned_cols=328 Identities=11% Similarity=0.036 Sum_probs=200.5
Q ss_pred CcccccccCCCh-HHHHHHHHHHhcc-cC--CCCCCCh-h---hHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHH
Q 011057 58 LNLASFVTTWME-PECDKLMMAAINK-NY--VDMDEYP-V---TTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEA 129 (494)
Q Consensus 58 ~~~~~~~~~~~~-p~~~~~~~~~~~~-~~--~~~~~~~-~---~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a 129 (494)
++|..+.+..++ +.+.+++.+++.. +. ..|.... + ..++++.+.+++.+..+...+ ...+++|+|++++
T Consensus 59 i~l~~g~~~~~~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~---~~~iv~t~G~~~a 135 (427)
T 2hox_A 59 ADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAK---DRYIVFGVGVTQL 135 (427)
T ss_dssp EECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCT---TCEEEEESHHHHH
T ss_pred EEecCcCCCCCCCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCC---CCEEEEeCCHHHH
Confidence 344444444333 4566777777632 22 1244444 5 677888777777664443221 1358999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEe
Q 011057 130 IMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAI 209 (494)
Q Consensus 130 ~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~ 209 (494)
+.+++.++..... .+.-..+++|+++.+.|..+...++..|++++. +.+|+++|++++++++++|+++
T Consensus 136 l~~~~~~l~~~~~-----~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~-------~~~d~~~l~~~~~~~~k~v~l~ 203 (427)
T 2hox_A 136 IHGLVISLSPNMT-----ATPDAPESKVVAHAPFYPVFREQTKYFDKKGYV-------WAGNAANYVNVSNPEQYIEMVT 203 (427)
T ss_dssp HHHHHHHHSCCTT-----TCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEE-------EEEEGGGGTTCSCGGGEEEEEE
T ss_pred HHHHHHHHhhccc-----cccCCCCCEEEEeCCCcccHHHHHHHcCCeeee-------ecCCHHHHHHhhcCCceEEEEc
Confidence 9988877610000 000001258999999999999999999988763 3467788888888888999999
Q ss_pred eCCCCcccccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCC-cCCceEEE
Q 011057 210 LGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGL-VYAGIGWV 288 (494)
Q Consensus 210 ~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~G~~ 288 (494)
+++||||.+.+ + ++ . ++..+.|+++... +. +.. .+. ...+++..+++|.+. ++.++|++
T Consensus 204 ~p~NPtG~~~~-~----~l--~------~~~~i~d~~~~~~---~~-s~~--~~~-~~~~i~~~S~SK~~g~~G~RiG~~ 263 (427)
T 2hox_A 204 SPNNPEGLLRH-A----VI--K------GCKSIYDMVYYWP---HY-TPI--KYK-ADEDILLFTMSKFTGHSGSRFGWA 263 (427)
T ss_dssp SSCTTTCCCCC-C----SS--T------TCEEEEECTTCST---TT-SCC--CSC-BCCSEEEEEHHHHTSCGGGCCEEE
T ss_pred CCCCCcccccH-H----HH--c------CCCEEEeecccCC---CC-Ccc--ccC-CCceEEEEeChhcCCCCCceEEEE
Confidence 99999999988 4 22 2 5578888877431 11 101 111 356889999999874 55678999
Q ss_pred EEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcH-------------hHHHHHHHHHHHHHHHHH
Q 011057 289 IWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGF-------------EGYRNVMENCHENAMVLK 355 (494)
Q Consensus 289 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~-------------~g~~~~~~~~~~~a~~l~ 355 (494)
+++++..+ ..+.....+.. .. .+.+.+.++...+.. +-+++..+++.++++++.
T Consensus 264 ~~~~~~l~-~~l~~~~~~~~---------~~---~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 330 (427)
T 2hox_A 264 LIKDESVY-NNLLNYMTKNT---------EG---TPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNIT 330 (427)
T ss_dssp EECCHHHH-HHHHHHHHHHT---------SS---CCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHH
T ss_pred EECCHHHH-HHHHHHHHhcC---------CC---CCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHH
Confidence 98644332 21111111000 01 112223333333321 223456677788899999
Q ss_pred HHHhhCCCeEE--ee-----------cCCCccEEEEEecCCCCCCHHHHHHHHH-hcCceeeccccCCCCCCceEEEEEe
Q 011057 356 EGLEKTGRFNI--VS-----------KDEGVPLVAFSLKDNKRHDEFEVAELLR-RFGWIVPAYTMPADAQHITVLRVVI 421 (494)
Q Consensus 356 ~~L~~~~~~~~--~~-----------~~~~~~~v~f~~~~~~~~~~~~l~~~L~-~~Gi~v~~~~~~~~~~~~~~lRvs~ 421 (494)
+.|++++++++ +. .+....++.+.+.. +..+++++|. ++||.+........ +..++|+++
T Consensus 331 ~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~----~~~~~~~~ll~~~gI~v~pg~~f~~--~~~~~Ris~ 404 (427)
T 2hox_A 331 ALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW----EEDKDCYQTFQNGRINTQNGVGFEA--SSRYVRLSL 404 (427)
T ss_dssp HHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS----GGGCSHHHHHHHTTEECEEGGGGTS--CTTEEEEEC
T ss_pred HHHHhCcCccccccccccccccccccCCCCceEEEEECCC----cHHHHHHHHHHHCCEEEcCCCccCC--CCCEEEEEe
Confidence 99999866765 21 12124456667643 2345777764 78999865433221 356899999
Q ss_pred ccCCChHHHHHHHHHHHHHH
Q 011057 422 REDFSRTLAERLVLDITKVL 441 (494)
Q Consensus 422 ~~~~t~~~id~~i~~l~~~~ 441 (494)
.. +.++++.+++.|++++
T Consensus 405 ~~--~~e~l~~~l~~l~~~~ 422 (427)
T 2hox_A 405 IK--TQDDFDQLMYYLKDMV 422 (427)
T ss_dssp SS--CHHHHHHHHHHHHHHH
T ss_pred cC--CHHHHHHHHHHHHHHH
Confidence 84 6777776666666554
No 230
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.77 E-value=2.3e-17 Score=167.55 Aligned_cols=327 Identities=14% Similarity=0.013 Sum_probs=192.5
Q ss_pred cCCCCCcccccc----cCCChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhH
Q 011057 53 DGNPRLNLASFV----TTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSE 128 (494)
Q Consensus 53 ~~~~~~~~~~~~----~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~ 128 (494)
+++.++++.++. .++.+|.+.+++.+.++... .+ ....+++.+++++++++++ .. ..+++++||++
T Consensus 50 ~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~---~~~~~~~~~l~~~l~~~~~-~~-----~~v~~~~~g~e 119 (424)
T 2e7u_A 50 DGNRYLDYVMSWGPLILGHAHPKVLARVRETLERGL-TF---GAPSPLEVALAKKVKRAYP-FV-----DLVRFVNSGTE 119 (424)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCS-CC---SSCCHHHHHHHHHHHHHCT-TC-----CEEEEESSHHH
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHhCC-CC---CCCCHHHHHHHHHHHHhCC-CC-----CEEEEeCCHHH
Confidence 455555555432 12357889999988886532 22 1234566678888999885 22 34899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCc-chHHHHHHHH-------------cCC------eeEEEeccCCcc
Q 011057 129 AIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANV-QVCWEKFARY-------------FEV------ELKEVKLSEGYY 188 (494)
Q Consensus 129 a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~-h~s~~~~~~~-------------~G~------~v~~v~~~~~~~ 188 (494)
|+..++.+++... + ++.|++.+++ |.....+... .|+ .+..++.
T Consensus 120 a~~~al~~ar~~~-------~----~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~----- 183 (424)
T 2e7u_A 120 ATMSALRLARGYT-------G----RPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY----- 183 (424)
T ss_dssp HHHHHHHHHHHHH-------C----CCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-----
T ss_pred HHHHHHHHHHHhh-------C----CCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-----
Confidence 9999988764321 1 2456655544 4322211111 122 2333432
Q ss_pred ccCHHHHHHhhhh--CCeEEEEeeCCC-CcccccC----HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccc
Q 011057 189 VMDPVKAVEMVDE--NTICVAAILGST-LNGEFED----VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEW 261 (494)
Q Consensus 189 ~~d~~~L~~~i~~--~t~~vv~~~~~~-~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~ 261 (494)
.|+++|++++++ +...++++.|++ ++|.+.| +++|.++ ++| |+++++|++|+++. .......
T Consensus 184 -~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~------g~~lI~DEv~~g~~---~g~~~~~ 252 (424)
T 2e7u_A 184 -NDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAY------GVLLIADEVMTGFR---LAFGGAT 252 (424)
T ss_dssp -TCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGG------TCEEEEECTTTTTT---SSTTHHH
T ss_pred -CCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHc------CCEEEEecCccccc---cchhHHH
Confidence 488999999873 233444455655 4898877 9999999 999 99999999999652 1111111
Q ss_pred -cccCCCceEEEEcCcccCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHH
Q 011057 262 -DFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGY 340 (494)
Q Consensus 262 -~~~~~~~D~~~~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~ 340 (494)
.++. ..|.+ ++.|++.++..+|+++.+++ .+ +.+....... ...+ ++.+.....+..++++.+.. .
T Consensus 253 ~~~~~-~~di~--s~sK~l~~G~~~G~~~~~~~-~~-~~~~~~~~~~----~~~t--~~~~~~~~aaa~aal~~~~~--~ 319 (424)
T 2e7u_A 253 ELLGL-KPDLV--TLGKILGGGLPAAAYAGRRE-IM-EKVAPLGPVY----QAGT--LSGNPLAMAAGLATLELLEE--N 319 (424)
T ss_dssp HHHTC-CCSEE--EECGGGGTTSSCEEEEECHH-HH-TTBTTTSSBC----CCCT--TCSCHHHHHHHHHHHHHHHH--C
T ss_pred HHhCC-Ccchh--hhhhhhhCCcceEEEEEcHH-HH-hhhcccCCcc----cCCC--CCCCHHHHHHHHHHHHHHHh--c
Confidence 1121 35665 45698887778899887652 22 2111100000 0001 12223344455556655533 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhC----CCeEEeecCCCccEEEEEecCCC-----------CCCHHHHHHHHHhcCceeecc
Q 011057 341 RNVMENCHENAMVLKEGLEKT----GRFNIVSKDEGVPLVAFSLKDNK-----------RHDEFEVAELLRRFGWIVPAY 405 (494)
Q Consensus 341 ~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~~~~~v~f~~~~~~-----------~~~~~~l~~~L~~~Gi~v~~~ 405 (494)
++..++..++.+++++.|+++ + +.....+ ..+++.+.+.... ..+..++.+.|.++|+.+...
T Consensus 320 ~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~ 397 (424)
T 2e7u_A 320 PGYYAYLEDLGARLEAGLKEVLKEKG-LPHTVNR-VGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPS 397 (424)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHTT-CCCEEEE-ETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCC-CceEEEe-eceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEecc
Confidence 456777888888888888775 4 3211122 3467778774310 112457889999999986432
Q ss_pred ccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHH
Q 011057 406 TMPADAQHITVLRVVIREDFSRTLAERLVLDITKV 440 (494)
Q Consensus 406 ~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~ 440 (494)
. ...+|+ +..+++++++++++.|+++
T Consensus 398 ~-------~~~~~~--~~~~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 398 N-------FEAAFL--SVAHREEDVEKTLEALRKA 423 (424)
T ss_dssp S-------SSCEEC--CTTCCHHHHHHHHHHHHHH
T ss_pred C-------CCceEe--eccCCHHHHHHHHHHHHHh
Confidence 1 112454 4567999999988888765
No 231
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.75 E-value=5.9e-16 Score=152.13 Aligned_cols=337 Identities=15% Similarity=0.094 Sum_probs=212.7
Q ss_pred ChHHHHHHHHHHhcccCC-C------CCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcc--eeeecChhHHHHHHHHHHH
Q 011057 68 MEPECDKLMMAAINKNYV-D------MDEYPVTTELQNRCVNIIARLFNAPLEDSETAV--GVGTVGSSEAIMLAGLAFK 138 (494)
Q Consensus 68 ~~p~~~~~~~~~~~~~~~-~------~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~--~~~t~ggt~a~~~a~~a~~ 138 (494)
.+|.+.+++-..+.+-+. + |+......++|.-+++...++||++.. .+ .+-..+|+.||+.+..++.
T Consensus 66 ~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A----~w~VNVQP~SGs~AN~avy~All 141 (490)
T 3ou5_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPA----QWGVNVQPYSGSPANLAVYTALL 141 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTT----TEEEECCCSSHHHHHHHHHHHHC
T ss_pred CCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCcc----ccCCCCCcCCHHHHHHHHHHHHc
Confidence 357888887766654221 1 223335778999999999999999852 22 3566799999998888885
Q ss_pred HHHHHHHHhcCCCCCCCeEEeCCCc---chHHH-----HHHHHcCC--eeEEEeccCCccccCHHHHHHhhhh-CCeEEE
Q 011057 139 RKWQNKRKAEGKPFDKPNIVTGANV---QVCWE-----KFARYFEV--ELKEVKLSEGYYVMDPVKAVEMVDE-NTICVA 207 (494)
Q Consensus 139 ~~~~~~~~~~g~~~~~~~vi~~~~~---h~s~~-----~~~~~~G~--~v~~v~~~~~~~~~d~~~L~~~i~~-~t~~vv 207 (494)
.+ .+.|+.-+.. |.+-. ......|. ++...+++++++.+|.+++++...+ +|++|+
T Consensus 142 ~P-------------GD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklIi 208 (490)
T 3ou5_A 142 QP-------------HDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLII 208 (490)
T ss_dssp C--------------CCCEECBC----------------------------CBCEETTTTEECHHHHHHHHHHHCCSEEE
T ss_pred CC-------------CCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhcCCCeEE
Confidence 42 2567754443 33322 11223343 3344556666689999999988765 677665
Q ss_pred EeeCCCCcccccCHHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcccCCcCCceEE
Q 011057 208 AILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGW 287 (494)
Q Consensus 208 ~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~G~ 287 (494)
+ ..+.. -...|++++.+||++. |++|++|.||-.|.+ ....++.. ++.+|+++.+.||.|.+|.| |+
T Consensus 209 ~-G~SaY-~r~id~~~~reIAd~v------GA~Lm~DmAHiaGLV--A~g~~psP--~~~ADvVTtTTHKTLrGPrG-G~ 275 (490)
T 3ou5_A 209 A-GTSAY-ARLIDYARMREVCDEV------KAHLLADMAHISGLV--AAKVIPSP--FKHADIVTTTTHKTLRGARS-GL 275 (490)
T ss_dssp E-CCSSC-CSCCCHHHHHHHHHHH------TCEEEEECGGGHHHH--HTTSSCCG--GGTCSEEEEESSSTTCSCSC-EE
T ss_pred E-CCccC-ccccCHHHHHHHHhhc------ccEEEechhhhhhhh--cccccCCc--cccceEEeccccccccCCCc-eE
Confidence 4 33333 3445899999999999 999999999965433 11211212 23699999999999988865 78
Q ss_pred EEEeCCCCccc---------ccc--cccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHH
Q 011057 288 VIWRNKEDLPE---------ELI--FHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKE 356 (494)
Q Consensus 288 ~~~~~~~~~~~---------~~~--~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~ 356 (494)
+++++...... .+. .....+. .+.+.+-...+++...++.......++++.+...++++.|.+
T Consensus 276 Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFP------g~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~ 349 (490)
T 3ou5_A 276 IFYRKGVKAVDPKTGREIPYTFEDRINFAVFP------SLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMAD 349 (490)
T ss_dssp EEEECSEEEECC--CCEEECCCHHHHHHHHTT------TTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccccccccccccchhHHHHHHHHHhhcCc------cccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Confidence 88776311000 000 0000011 112333345566666666544344568899999999999999
Q ss_pred HHhhCCCeEEeecCCCccEEEEEecCCCCCCHHHHHHHHHhcCceeeccccCCCC--CCceEEEEEecc----CCChHHH
Q 011057 357 GLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADA--QHITVLRVVIRE----DFSRTLA 430 (494)
Q Consensus 357 ~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~--~~~~~lRvs~~~----~~t~~~i 430 (494)
.|.+.| +++++......++.+.+.+ .+++..+..+.|.+-||.+..-..|.+. .....+|+.... .+.++|+
T Consensus 350 ~L~~~G-~~vvsGgTdnHlvLvDl~~-~g~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm 427 (490)
T 3ou5_A 350 ALLERG-YSLVSGGTDNHLVLVDLRP-KGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDF 427 (490)
T ss_dssp HHHHTT-CEEGGGSCSSSEEEEECGG-GTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHH
T ss_pred HHHhCC-CeeecCCCCceEEEEeccc-cCCCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHH
Confidence 999987 9998765566788888754 4678888999999999998654555431 123459998643 4556777
Q ss_pred HHHHHHHHHHHH
Q 011057 431 ERLVLDITKVLH 442 (494)
Q Consensus 431 d~~i~~l~~~~~ 442 (494)
+.+.+-|.++++
T Consensus 428 ~~IA~~I~~~l~ 439 (490)
T 3ou5_A 428 RRVVDFIDEGVN 439 (490)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 776666666664
No 232
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.47 E-value=8.2e-18 Score=171.34 Aligned_cols=334 Identities=11% Similarity=-0.007 Sum_probs=196.4
Q ss_pred hcCCCCCccccccc----CCChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHh-CCCCCCCCCcceeeecCh
Q 011057 52 LDGNPRLNLASFVT----TWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLF-NAPLEDSETAVGVGTVGS 126 (494)
Q Consensus 52 ~~~~~~~~~~~~~~----~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~-g~~~~~~~~~~~~~t~gg 126 (494)
.+|+.++.+.++.. .+.+|.+.+++.+.+..... + ....+.+.++.+.|++++ +.+ .+.++++|
T Consensus 97 ~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~~-~---~~~~~~~~~Lae~L~~~~p~~~-------~v~~~nSG 165 (465)
T 2yky_A 97 VDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLN-L---STQTENEALFAEAVCDRFPSID-------LVRFTNSG 165 (465)
Confidence 35666666555432 23468888888877765321 1 123455566778888888 443 38899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCC-CcchHHHHHH---HHcCC--eeEEEeccCCccccCHHHHHHhhh
Q 011057 127 SEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGA-NVQVCWEKFA---RYFEV--ELKEVKLSEGYYVMDPVKAVEMVD 200 (494)
Q Consensus 127 t~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~-~~h~s~~~~~---~~~G~--~v~~v~~~~~~~~~d~~~L~~~i~ 200 (494)
++|+..++++++... | +++||+.+ ..|.....++ ...|+ .+..++ ..|+++|+++++
T Consensus 166 seA~~~Aik~ar~~t-------g----r~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~------~~d~~~l~~~l~ 228 (465)
T 2yky_A 166 TEANLMALATATAIT-------G----RKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGV------YNDVEGTADLLK 228 (465)
Confidence 999999998875321 1 13565544 4555443332 11233 222222 147889999887
Q ss_pred ---hCCeEEEEeeCCCCcccccC----HHHHHHHHHHhhcccCCCceEEEecccccccccccCCccccc-ccCCCceEEE
Q 011057 201 ---ENTICVAAILGSTLNGEFED----VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWD-FRLPLVKSIN 272 (494)
Q Consensus 201 ---~~t~~vv~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~D~~~ 272 (494)
+++++|++....+++|.+.| +++|.++|+++ |+++++|++|. +.. . +....+ +++ ..|.++
T Consensus 229 ~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~------g~llI~DEv~~-~r~--g-~~~a~~~~gv-~pDi~t 297 (465)
T 2yky_A 229 RHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRC------GALLIFDEVMT-SRL--S-GGGAQEMLGI-SADLTT 297 (465)
Confidence 56777776555567898776 99999999999 99999999999 521 1 111111 111 256554
Q ss_pred EcCcccCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHH
Q 011057 273 VSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAM 352 (494)
Q Consensus 273 ~~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~ 352 (494)
+.|++.++..+|+++.+.+ .+ +.+... ..+......++ +.++....+..++|+.+.++ ...++..++.+
T Consensus 298 --~sK~lg~G~piG~v~~~~~-i~-~~l~~~--~~g~~~~~~T~--~~npla~aAa~aaL~~l~~~---~~~~~~~~~~~ 366 (465)
T 2yky_A 298 --LGKYIGGGMSFGAFGGRRD-LM-ERFDPA--RDGAFAHAGTF--NNNILTMSAGHAALTQIYTR---QAASDLSASGD 366 (465)
Confidence 5699887777888876553 22 211110 00000001111 12223334444556655443 46677788888
Q ss_pred HHHHHHhhCC-CeEEeec-CCCccEEEEEecCCC-----------CCCHHHHHHHHHhcCceeeccccCCCCCCceEEEE
Q 011057 353 VLKEGLEKTG-RFNIVSK-DEGVPLVAFSLKDNK-----------RHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRV 419 (494)
Q Consensus 353 ~l~~~L~~~~-~~~~~~~-~~~~~~v~f~~~~~~-----------~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRv 419 (494)
+|+++|+++. .+.+... +....++.+.+.... ......+.++|.++|+++.....+ . +
T Consensus 367 ~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~~~~-------~--~ 437 (465)
T 2yky_A 367 RFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPRGMY-------A--L 437 (465)
Confidence 8888887762 1222111 113456666654200 011457888999999986432211 1 3
Q ss_pred EeccCCChHHHHHHHHHHHHHHHHHhc
Q 011057 420 VIREDFSRTLAERLVLDITKVLHELDS 446 (494)
Q Consensus 420 s~~~~~t~~~id~~i~~l~~~~~~l~~ 446 (494)
+ ..+|+++++++++.|++++++++.
T Consensus 438 s--~~~t~edid~~l~~l~~~l~~~~~ 462 (465)
T 2yky_A 438 S--LEIADAGRDAFAEALADFIGEQRA 462 (465)
Confidence 3 346889999999999988877643
No 233
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.62 E-value=4.5e-14 Score=142.83 Aligned_cols=333 Identities=16% Similarity=0.078 Sum_probs=192.9
Q ss_pred cCCCCCccccc----ccCCChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhH
Q 011057 53 DGNPRLNLASF----VTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSE 128 (494)
Q Consensus 53 ~~~~~~~~~~~----~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~ 128 (494)
+|+.++.+.++ ...+.+|.+.+++.+.++.... +.. + ..++.++.+.|++++... ..+.|+++|||
T Consensus 85 dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~~-~~~-~--~~~~~~lae~l~~~~p~~------~~v~f~~SGsE 154 (454)
T 4ao9_A 85 DGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGIN-LTG-H--NLLEGRLARLICERFPQI------EQLRFTNSGTE 154 (454)
T ss_dssp TCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCSC-CCS-E--ESSHHHHHHHHHHHSTTC------SEEEEESSHHH
T ss_pred CCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCCC-ccC-C--cHHHHHHHHHHHHhCCCC------CEEEEeCchHH
Confidence 55555544332 2235579999999888865332 211 1 223445667788877432 24899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCeEE-eCCCcchHHHHHHHHc---CCeeEEEeccCCccccCHHHHHHhhhh---
Q 011057 129 AIMLAGLAFKRKWQNKRKAEGKPFDKPNIV-TGANVQVCWEKFARYF---EVELKEVKLSEGYYVMDPVKAVEMVDE--- 201 (494)
Q Consensus 129 a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi-~~~~~h~s~~~~~~~~---G~~v~~v~~~~~~~~~d~~~L~~~i~~--- 201 (494)
|+..+++.++... | +.+|+ .....|.......... +.......+. .-|++++++.+++
T Consensus 155 A~e~AiklAr~~t-------g----r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p----~nd~~~l~~~l~~~~~ 219 (454)
T 4ao9_A 155 ANLMALTAALHFT-------G----RRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLP----YNDAQTARAQIERHGP 219 (454)
T ss_dssp HHHHHHHHHHHHH-------T----CCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEEC----TTCHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHhcc-------c----CCeEEEEeCCcCCccccccccccCccCCCCcccCC----CchHHHHHHHHhhcCC
Confidence 9999999997653 1 23454 4555665322111111 1111222221 2478888888875
Q ss_pred CCeEEEEeeCCCCcccccC----HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccccccCCCceEEEEcCcc
Q 011057 202 NTICVAAILGSTLNGEFED----VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHK 277 (494)
Q Consensus 202 ~t~~vv~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK 277 (494)
+..+|++--.....|.+.| +++|.++|++| |++||+|+++.+-..... ....+++ ..|.+++. |
T Consensus 220 ~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~------g~lLI~DEV~tGR~G~~~---a~e~~gv-~PDi~t~g--K 287 (454)
T 4ao9_A 220 EIAVVLVEPMQGASGCIPGQPDFLQALRESATQV------GALLVFDEVMTSRLAPHG---LANKLGI-RSDLTTLG--K 287 (454)
T ss_dssp GEEEEEECSEESTTTCEECCHHHHHHHHHHHHHH------TCEEEEECTTGGGGSTTC---HHHHHTC-CCSEEEEE--G
T ss_pred ceEEEEeccccCCCCccCCchhhHHHHHHHHhhc------CCEEEEECCCcCCCcccc---chhccCC-CCcEEEec--c
Confidence 3455555444456688877 99999999999 999999999974211110 0112222 35877654 8
Q ss_pred cCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHH
Q 011057 278 YGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEG 357 (494)
Q Consensus 278 ~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~l~~~ 357 (494)
.+.++..+|.++.+.+ .+ +.+..... ......| ++.++....+..++|+.+.++ +..++..++.++|+++
T Consensus 288 ~lggG~Piga~~~~~e-i~-~~~~~~~~---~~~h~~T--~~gnPla~AAala~L~~l~~~---~~~~~~~~~g~~l~~~ 357 (454)
T 4ao9_A 288 YIGGGMSFGAFGGRAD-VM-ALFDPRTG---PLAHSGT--FNNNVMTMAAGYAGLTKLFTP---EAAGALAERGEALRAR 357 (454)
T ss_dssp GGGTTSSCEEEEECHH-HH-GGGCTTTC---SCCCCCT--TTTCHHHHHHHHHHHHHTSCH---HHHHHHHHHHHHHHHH
T ss_pred ccCCCCcceeeeeHHH-HH-HHHhhccC---CccccCC--CCCCHHHHHHHHHHHHHHhcc---ChhHHHHHHHHHHHHH
Confidence 8777777888876653 22 22111100 0000112 223345556666777777654 3456666777777777
Q ss_pred HhhC----CC-eEEeecCCCccEEEEEecCCC--------CCC---HHHHHHHHHhcCceeeccccCCCCCCceEEEEEe
Q 011057 358 LEKT----GR-FNIVSKDEGVPLVAFSLKDNK--------RHD---EFEVAELLRRFGWIVPAYTMPADAQHITVLRVVI 421 (494)
Q Consensus 358 L~~~----~~-~~~~~~~~~~~~v~f~~~~~~--------~~~---~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~ 421 (494)
|+++ +- .++-.. ..++.+.+.... ..+ ...+...|.++|+++. | .+ ++.+
T Consensus 358 L~~l~~~~~~~~~vrg~---G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~----p---~~----~~~~ 423 (454)
T 4ao9_A 358 LNALCANEGVAMQFTGI---GSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSS----P---RG----FVVL 423 (454)
T ss_dssp HHHHHHHHTBSCEEEEE---TTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECC----T---TC----EEEC
T ss_pred HHHHHhhCCCCEEEeee---ceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEc----C---CC----CEEE
Confidence 7654 31 122221 245555553211 112 2356678899999753 2 11 2334
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHhc
Q 011057 422 REDFSRTLAERLVLDITKVLHELDS 446 (494)
Q Consensus 422 ~~~~t~~~id~~i~~l~~~~~~l~~ 446 (494)
...+|++|||+++++|+++++++..
T Consensus 424 s~~~T~~dId~~l~al~~~l~~~~a 448 (454)
T 4ao9_A 424 SLPLTDADIDRYVAAIGSFIGGHGA 448 (454)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHSGG
T ss_pred eCCCCHHHHHHHHHHHHHHHHhccc
Confidence 5568999999999999999988654
No 234
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.57 E-value=3.6e-12 Score=129.92 Aligned_cols=355 Identities=14% Similarity=-0.004 Sum_probs=199.4
Q ss_pred cCCCCCccccc----ccCCChHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhH
Q 011057 53 DGNPRLNLASF----VTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSE 128 (494)
Q Consensus 53 ~~~~~~~~~~~----~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~ 128 (494)
+|+.++.+.++ ...+.+|.+.+++.+.+++.......+....+.+.++.+.|+++...+. ..+.|+++|+|
T Consensus 65 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~~~~~~~~~~~~lAe~L~~~~p~~~-----~~v~f~~sGsE 139 (473)
T 4e3q_A 65 NGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVSPFDS-----GRVFYTNSGSE 139 (473)
T ss_dssp TCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCCCCTTEEEHHHHHHHHHHHHHSSCSS-----CEEEEESSHHH
T ss_pred CCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcccccccccccCHHHHHHHHHHHhhCCCCc-----cEEEEeCchHH
Confidence 55666544433 2235679999999887776432111222223344457788988876542 34899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCeEE-eCCCcchHHHHHHHHcCC-----------eeEEEeccC-----Cccc--
Q 011057 129 AIMLAGLAFKRKWQNKRKAEGKPFDKPNIV-TGANVQVCWEKFARYFEV-----------ELKEVKLSE-----GYYV-- 189 (494)
Q Consensus 129 a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi-~~~~~h~s~~~~~~~~G~-----------~v~~v~~~~-----~~~~-- 189 (494)
|+..|++.++..+..+ |.. .+.+|| .....|....-++...|- .+..++... ....
T Consensus 140 A~e~AiKlAr~~~~~~----g~~-~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 214 (473)
T 4e3q_A 140 ANDTMVKMLWFLHAAE----GKP-QKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETE 214 (473)
T ss_dssp HHHHHHHHHHHHHHHT----TCT-TCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCH
T ss_pred HHHHHHHHHHHHHHhc----CCC-CcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchh
Confidence 9999999997654332 211 123454 455667654444443332 133343221 0000
Q ss_pred -----cCHHHHHHhhhh---C-CeEEEEeeCCCCcccccC----HHHHHHHHHHhhcccCCCceEEEecccccccccccC
Q 011057 190 -----MDPVKAVEMVDE---N-TICVAAILGSTLNGEFED----VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLY 256 (494)
Q Consensus 190 -----~d~~~L~~~i~~---~-t~~vv~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~ 256 (494)
...+++++.+.. + ..+|++--.....|.+.| +++|.++|++| |++||+|+++.++.- ..
T Consensus 215 ~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~------gilLI~DEV~tGfGR--tG 286 (473)
T 4e3q_A 215 EQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKY------DIPVISDEVICGFGR--TG 286 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT------TCCEEEECTTTSSST--TS
T ss_pred hHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhccc------ceEEeccCccccCCc--cc
Confidence 012345555542 2 344444433445566633 89999999999 999999999987521 11
Q ss_pred Ccccc-cccCCCceEEEEcCcccCCcC-CceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHH
Q 011057 257 PELEW-DFRLPLVKSINVSGHKYGLVY-AGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIR 334 (494)
Q Consensus 257 ~~~~~-~~~~~~~D~~~~~~hK~l~~p-~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~ 334 (494)
..... .+++ ..|.+++. |.+.++ ..+|.++++++ .. +.+...........-..+ ++.++....+..+.|+.
T Consensus 287 ~~fa~e~~gv-~PDi~t~~--K~l~gG~~Pl~av~~~~~-i~-~~~~~~~~~~~~~~hg~T--~~Gnpla~Aaala~L~~ 359 (473)
T 4e3q_A 287 NTWGCVTYDF-TPDAIISS--KNLTAGFFPMGAVILGPE-LS-KRLETAIEAIEEFPHGFT--ASGHPVGCAIALKAIDV 359 (473)
T ss_dssp SSCHHHHTTC-CCSEEEEC--GGGGTTSSCCEEEEECHH-HH-HHHHHHHHHHSCCCCCCT--TTTCHHHHHHHHHHHHH
T ss_pred chhHHHhcCC-CCChHHhc--ccccCCCCCcccccccHH-HH-HHhccccccccccccCCC--CCCCcchhhhhhhhhhh
Confidence 11111 1122 46887754 766554 66788877653 21 111110000000001112 22333555566677777
Q ss_pred hcHhHHHHHHHHHHHHHHHHHHHHhhCC---CeEEeecCCCccEEEEEecCCC----CC----C-HHHHHHHHHhcCcee
Q 011057 335 LGFEGYRNVMENCHENAMVLKEGLEKTG---RFNIVSKDEGVPLVAFSLKDNK----RH----D-EFEVAELLRRFGWIV 402 (494)
Q Consensus 335 l~~~g~~~~~~~~~~~a~~l~~~L~~~~---~~~~~~~~~~~~~v~f~~~~~~----~~----~-~~~l~~~L~~~Gi~v 402 (494)
+.+++ ..++..++.++|.++|+++. .+.-+.. ..-++.+.+..+. .. . ...+.+.+.++|+++
T Consensus 360 i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~v~~vRG--~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~ 434 (473)
T 4e3q_A 360 VMNEG---LAENVRRLAPRFEERLKHIAERPNIGEYRG--IGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLIC 434 (473)
T ss_dssp HHHSS---HHHHHHHHHHHHHHHHHHHTTSTTEEEEEE--ETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEEC
T ss_pred hcccc---HHHHHHHHHHHHHHHHHHHhcCCCeeEEee--cceEEEEEEecCccccccccccHHHHHHHHHHHHHCCcEE
Confidence 76654 45566677778888877653 2221111 2235566653211 01 1 457889999999986
Q ss_pred eccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHHh
Q 011057 403 PAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELD 445 (494)
Q Consensus 403 ~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~ 445 (494)
... + ..+|++-...+|++++|.+++.|+++++++.
T Consensus 435 ~~~-------g-~~i~l~PPL~it~~eid~~~~~l~~al~~v~ 469 (473)
T 4e3q_A 435 RPL-------G-QSVVLCPPFILTEAQMDEMFDKLEKALDKVF 469 (473)
T ss_dssp EEE-------T-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred Eec-------C-CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 431 2 3588776666899999999999999887763
No 235
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.52 E-value=3e-11 Score=122.65 Aligned_cols=330 Identities=13% Similarity=-0.009 Sum_probs=188.2
Q ss_pred CChHHHHHHHHHHhcccCCC-CCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHH
Q 011057 67 WMEPECDKLMMAAINKNYVD-MDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKR 145 (494)
Q Consensus 67 ~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~ 145 (494)
+.+|.+.+++.+.++..... ....+ .+.+.++.+.|++++..+. ...+.|+++|+||+..|++.++...
T Consensus 80 h~~p~v~~Ai~~q~~~~~~~~~~~~~--~~~~~~lae~L~~~~p~~~----~~~v~f~~sGsEA~e~AlklAr~~t---- 149 (456)
T 4atq_A 80 ASDPAVVAAVQEAAAHFTHTCFMVTP--YEGYVAVTEQLNRLTPGDH----AKRTVLFNSGAEAVENAVKVARLAT---- 149 (456)
T ss_dssp TTCHHHHHHHHHHHHHCSCCTTTTSC--CHHHHHHHHHHHHHSSCSS----CEEEEEESSHHHHHHHHHHHHHHHH----
T ss_pred CCCHHHHHHHHHHHhhccCcccCccC--cHHHHHHHHHHHHhCCCCC----CcEEEEeCChHHHHHHHHHHHhhhh----
Confidence 55789999888777653221 11111 2233346677888875432 1347889999999999999997642
Q ss_pred HhcCCCCCCCeEE-eCCCcchHHHHHHHHcCC-------------eeEEEeccCC-----ccccCHHHHHHhh-------
Q 011057 146 KAEGKPFDKPNIV-TGANVQVCWEKFARYFEV-------------ELKEVKLSEG-----YYVMDPVKAVEMV------- 199 (494)
Q Consensus 146 ~~~g~~~~~~~vi-~~~~~h~s~~~~~~~~G~-------------~v~~v~~~~~-----~~~~d~~~L~~~i------- 199 (494)
| +.+|+ .....|....-+....+- .+..+|.... ....+.+.+++.+
T Consensus 150 ---~----r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 222 (456)
T 4atq_A 150 ---G----RDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQI 222 (456)
T ss_dssp ---C----CCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHT
T ss_pred ---c----CCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhh
Confidence 1 23455 455667654433333221 2555654310 0112233333333
Q ss_pred hh-CCeEEEEeeCCCCcccccC----HHHHHHHHHHhhcccCCCceEEEecccccccccccCCcccc-cccCCCceEEEE
Q 011057 200 DE-NTICVAAILGSTLNGEFED----VKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEW-DFRLPLVKSINV 273 (494)
Q Consensus 200 ~~-~t~~vv~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~D~~~~ 273 (494)
.. +..+|++--.....|.+.| +++|.++|++| |++|++|+++.++.- ......+ .+++ ..|.+++
T Consensus 223 ~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~------gillI~DEV~tG~GR--tG~~~a~e~~gv-~PDivt~ 293 (456)
T 4atq_A 223 GGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEK------GIVFIADEVQSGFCR--TGEWFAVDHEGV-VPDIITM 293 (456)
T ss_dssp CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGTTC-CCSEEEE
T ss_pred cCCceEEEEeccccCCCCccccchhhhHHHHHHHhhc------CCceEecccccccCC--ccccccccccCC-CCchhhh
Confidence 22 3344554333345566643 89999999999 999999999987421 1111111 2233 3688876
Q ss_pred cCcccCCcCCceEEEEEeCCCCcccccccccCCCCCCCCCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHH
Q 011057 274 SGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMV 353 (494)
Q Consensus 274 ~~hK~l~~p~g~G~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~~~~a~~ 353 (494)
. |.+.++..+|.++.+++ .. +.+ .+... ..| ++.++...++..+.|+.+.++++ .++..++.++
T Consensus 294 g--K~lggg~P~~av~~~~~-i~-~~~--~~~~~-----~~T--f~gnpla~aaala~L~~i~~~~l---~~~~~~~g~~ 357 (456)
T 4atq_A 294 A--KGIAGGLPLSAITGRAD-LL-DAV--HPGGL-----GGT--YGGNPVACAAALAAIDTMEQHDL---NGRARHIEEL 357 (456)
T ss_dssp C--GGGGTTSSCEEEEEEHH-HH-TTS--CTTSS-----CCS--SSSCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHH
T ss_pred h--hcccCcCCceeeEecHH-HH-hcc--cccCC-----CCC--CCCChHHHHhhHHHHHHHhhccH---HHHHHHHHHH
Confidence 5 77766677788887753 11 111 11111 112 22334556667777777776654 4455556666
Q ss_pred HHHHHhhC----CC--eEEeecCC-CccEEEEEecCCCC--CC---HHHHHHHHHhcCceeeccccCCCCCCceEEEEEe
Q 011057 354 LKEGLEKT----GR--FNIVSKDE-GVPLVAFSLKDNKR--HD---EFEVAELLRRFGWIVPAYTMPADAQHITVLRVVI 421 (494)
Q Consensus 354 l~~~L~~~----~~--~~~~~~~~-~~~~v~f~~~~~~~--~~---~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~ 421 (494)
|.++|+++ +. ..++.+-. ...++.+.+..+.. -+ ...+.+++.++|+++.... ....++|+.-
T Consensus 358 l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~g-----~~~~~irl~P 432 (456)
T 4atq_A 358 ALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACLKEGVIILTCG-----TYGNVIRLLP 432 (456)
T ss_dssp HHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEEC-----TTSCEEEECC
T ss_pred HHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCCCCCcCHHHHHHHHHHHHHCCCEEEecC-----CCCCEEEEEC
Confidence 66666543 21 11222111 23466676643211 11 4568889999999864321 2235799887
Q ss_pred ccCCChHHHHHHHHHHHHHHHH
Q 011057 422 REDFSRTLAERLVLDITKVLHE 443 (494)
Q Consensus 422 ~~~~t~~~id~~i~~l~~~~~~ 443 (494)
...+|++++|.+++.|+++++.
T Consensus 433 pL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 433 PLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHh
Confidence 7678999999999999988864
No 236
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.41 E-value=1.1e-11 Score=134.83 Aligned_cols=342 Identities=13% Similarity=-0.010 Sum_probs=187.2
Q ss_pred hHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHhCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhc
Q 011057 69 EPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAE 148 (494)
Q Consensus 69 ~p~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~ 148 (494)
+|++.+++.+.++...... ......+...++.++|+++++.+. ...+.|+++|++||..|++.+++.+..++
T Consensus 399 ~p~i~~Ai~~Q~~~l~h~~-~~~~~~~~~~~Lae~L~~~~p~~~----l~~vff~~SGSeA~E~AlK~A~r~~~~~~--- 470 (831)
T 4a0g_A 399 QAELAREMGYTAARFGHVM-FPENVYEPALKCAELLLDGVGKGW----ASRVYFSDNGSTAIEIALKMAFRKFCVDH--- 470 (831)
T ss_dssp HHHHHHHHHHHHHHHSSCC-CTTEECHHHHHHHHHHHHTTTTTT----CCEEEEESSHHHHHHHHHHHHHHHHHHTT---
T ss_pred CHHHHHHHHHHHhhccccc-ccccCCHHHHHHHHHHHHhCCCCC----CCEEEECCChhHHHHHHHHHHHHHHHhhc---
Confidence 6888888887776533211 001122233356777888886321 12489999999999999999965443221
Q ss_pred CCC-------CCCCeEE-eCCCcchHHHHHHHHcCCe----------------------------eEEEeccCC------
Q 011057 149 GKP-------FDKPNIV-TGANVQVCWEKFARYFEVE----------------------------LKEVKLSEG------ 186 (494)
Q Consensus 149 g~~-------~~~~~vi-~~~~~h~s~~~~~~~~G~~----------------------------v~~v~~~~~------ 186 (494)
|.. ..+.+|| .....|....-++...|.. +..+++...
T Consensus 471 g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~ 550 (831)
T 4a0g_A 471 NFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAP 550 (831)
T ss_dssp TC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCS
T ss_pred CCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCCcccccccc
Confidence 211 0133555 4666787666666554421 011222110
Q ss_pred -c-cccC------------------HHHHHHhhhh-------CCeEEEEeeCC--CCcccccC----HHHHHHHHHHhhc
Q 011057 187 -Y-YVMD------------------PVKAVEMVDE-------NTICVAAILGS--TLNGEFED----VKLLNDLLAEKNK 233 (494)
Q Consensus 187 -~-~~~d------------------~~~L~~~i~~-------~t~~vv~~~~~--~~tG~~~~----l~~I~~la~~~~~ 233 (494)
. ..-| .++|++.|++ +..+.+++.|. ...|.+.+ +++|.++|++|
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~-- 628 (831)
T 4a0g_A 551 EYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNR-- 628 (831)
T ss_dssp STTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHT--
T ss_pred ccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHc--
Confidence 0 0011 2567777652 33444555553 55577654 89999999999
Q ss_pred ccCCCceEEEecccccccccccCCcccc-cccCCCceEEEEcCcccCCcC-CceEEEEEeCCCCcccccccccCCCCCCC
Q 011057 234 ETGWDTPIHVDAASGGFIAPFLYPELEW-DFRLPLVKSINVSGHKYGLVY-AGIGWVIWRNKEDLPEELIFHINYLGADQ 311 (494)
Q Consensus 234 ~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~hK~l~~p-~g~G~~~~~~~~~~~~~~~~~~~y~~~~~ 311 (494)
|+++|+|+++.++.. ....... .+++ ..|.+++ .|.+.++ ..+|+++++++ .. +.+...... ....
T Consensus 629 ----gilLI~DEV~tGfGR--tG~~fa~e~~gv-~PDiitl--sK~L~gG~~Plgav~~~~~-i~-~~~~~~~~~-~~~~ 696 (831)
T 4a0g_A 629 ----KIPVIFDEVFTGFWR--LGVETTTELLGC-KPDIACF--AKLLTGGMVPLAVTLATDA-VF-DSFSGDSKL-KALL 696 (831)
T ss_dssp ----TCCEEEECTTTTTTT--TSBSSTHHHHSS-CCSEEEE--CGGGGTTSSCCEEEEECHH-HH-HTTCSSCGG-GSCC
T ss_pred ----CCeEEEEcCcccccc--CCCchhhHhcCC-CCcEEEE--ecccccCccCcEEEEECHH-HH-HHHhccccc-ccce
Confidence 999999999976421 1111111 1122 3577764 4877654 46788887653 11 111110000 0000
Q ss_pred CCcccccCcchHHHHHHHHHHHHhcHhHHHHHHHHH-HHH----HHHHHHHHhhCCCeEEeecCCCccEEEEEecCCC--
Q 011057 312 PTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENC-HEN----AMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNK-- 384 (494)
Q Consensus 312 ~~~~~~~s~~~~~~~a~~~al~~l~~~g~~~~~~~~-~~~----a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~-- 384 (494)
-.++ ++.++....+..++|+.+.++.+.+...+. ..+ .+.+.+.+.+.+.+.-+.. ...++.+.+....
T Consensus 697 hg~T--~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg--~Gl~~~iel~~~~~~ 772 (831)
T 4a0g_A 697 HGHS--YSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVV--IGTLFALELKADASN 772 (831)
T ss_dssp CCCT--TTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEE--ETTEEEEEEC-----
T ss_pred eecC--CcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEee--cccEEEEEEecCccc
Confidence 0111 223334555566667666443322211110 111 2235556666665543332 2356666664220
Q ss_pred ----CCCHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHH
Q 011057 385 ----RHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHEL 444 (494)
Q Consensus 385 ----~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l 444 (494)
......+.++|.++|+++... ...+|++....+|+++|+++++.|+++++++
T Consensus 773 ~~~~~~~a~~~~~~l~e~Gv~v~p~--------g~~lrl~pp~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 773 SGYASLYAKSLLIMLREDGIFTRPL--------GNVIYLMCGPCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp ----CHHHHHHHHHHHHTTEECCCB--------TTEEEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred cccchHHHHHHHHHHHHCCcEEEec--------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 112457889999999986431 2579999888899999999999998887644
No 237
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=43.24 E-value=1.1e+02 Score=23.65 Aligned_cols=89 Identities=9% Similarity=0.083 Sum_probs=47.7
Q ss_pred HHHhhCCCeEEeecCCCccEEEEEecCCCCCC-HHHHHHHHH-hcCceeeccccCCCCCCceEEEEEeccCCChHHHHHH
Q 011057 356 EGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHD-EFEVAELLR-RFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERL 433 (494)
Q Consensus 356 ~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~-~~~l~~~L~-~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~ 433 (494)
++.+++. +++.... -+...|.+.+.+ .. ..-|...|. +.++.+.+|..|--....-.+||-..... + .+.+
T Consensus 6 ~~~~kme-iki~~k~--~n~~~f~i~~ED-HTLgNlLr~~Llkdp~V~fAgY~vpHPle~~~~lrIqT~~~~-p--~eaL 78 (115)
T 1xpp_A 6 ERTAESS-LRVISKE--KNSITVEMINYD-NTLLRTLVEEILKDDQVDEARYYIKHPVIDNPQIYVRVKSGK-P--QSAI 78 (115)
T ss_dssp ---CCCE-EEEEEEC--SSEEEEEEESCC-HHHHHHHHHHHTTCTTEEEEEEECSSTTTSCCEEEEEESSSC-H--HHHH
T ss_pred ccccceE-EEEEcCC--CCEEEEEEeCCC-chhHHHHHHHHhcCCCeEEEEeecCCCCCCccEEEEEeCCCC-h--HHHH
Confidence 3344454 6777653 355666665531 11 234444444 45777788877755566778999886544 2 3334
Q ss_pred HHHHHHHHHHHhcCcccc
Q 011057 434 VLDITKVLHELDSLPSKV 451 (494)
Q Consensus 434 i~~l~~~~~~l~~~~~~~ 451 (494)
.++++.+.+.+..+.+.|
T Consensus 79 ~~al~~L~~~~~~l~~~f 96 (115)
T 1xpp_A 79 KRAVRKLSKLYEDLGTQF 96 (115)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444444
No 238
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=40.52 E-value=55 Score=24.30 Aligned_cols=79 Identities=13% Similarity=0.231 Sum_probs=42.9
Q ss_pred eEEeecCCCccEEEEEecCCCCCC-HHHHHHHHH-hcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHH
Q 011057 364 FNIVSKDEGVPLVAFSLKDNKRHD-EFEVAELLR-RFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVL 441 (494)
Q Consensus 364 ~~~~~~~~~~~~v~f~~~~~~~~~-~~~l~~~L~-~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~ 441 (494)
++++... -+...|.+.+.+ .. ..-+...|. +.++.+.+|..|--....-.+||-.....++ .+.+.++++.+.
T Consensus 3 ikvi~k~--~n~~~f~i~~ED-HTLgN~Lr~~L~~~p~V~fagY~vpHPl~~~~~lrIqT~~~~~p--~~al~~a~~~l~ 77 (92)
T 2pa8_L 3 IRILKSE--SNYLELEIEGED-HTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITP--KDALLKAIENIR 77 (92)
T ss_dssp EEEEEEE--TTEEEEEEETCC-HHHHHHHHHHHHTSTTEEEEEEECSSTTSCCEEEEEEECSSSCH--HHHHHHHHHHHH
T ss_pred eEEEecC--CCeEEEEEecCc-hhHHHHHHHHHhcCCCeeEEEeecCCCCCCceEEEEEECCCCCH--HHHHHHHHHHHH
Confidence 4455442 245566665431 11 234444444 4577778887775556677899998765555 233344444444
Q ss_pred HHHhcC
Q 011057 442 HELDSL 447 (494)
Q Consensus 442 ~~l~~~ 447 (494)
+.+..+
T Consensus 78 ~~~~~~ 83 (92)
T 2pa8_L 78 GMTSHY 83 (92)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 239
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=30.07 E-value=32 Score=29.57 Aligned_cols=50 Identities=12% Similarity=0.173 Sum_probs=37.3
Q ss_pred CHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEEEeccccc
Q 011057 191 DPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGG 249 (494)
Q Consensus 191 d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~ 249 (494)
|.+.|+++++.....+++.. |.+..++++.+.++++.+ -+++|+|-..|.
T Consensus 18 ~~~~l~~al~s~~~~ifll~-----g~i~~l~~~v~~lk~~~K----~v~Vh~Dli~Gl 67 (192)
T 3kts_A 18 NQKDMEKILELDLTYMVMLE-----THVAQLKALVKYAQAGGK----KVLLHADLVNGL 67 (192)
T ss_dssp SSHHHHHHTTSSCCEEEECS-----EETTTHHHHHHHHHHTTC----EEEEEGGGEETC
T ss_pred CHHHHHHHHcCCCCEEEEec-----CcHHHHHHHHHHHHHcCC----eEEEecCchhcc
Confidence 56889999887766655533 566789999999999932 467788877765
No 240
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=29.76 E-value=27 Score=34.65 Aligned_cols=33 Identities=18% Similarity=0.106 Sum_probs=29.3
Q ss_pred CCCCcccccCHHHHHHHHHHhhcccCCCceEEEeccccc
Q 011057 211 GSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGG 249 (494)
Q Consensus 211 ~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~ 249 (494)
.++..|+.++++++++-||++ ||.|++|.+.-.
T Consensus 69 i~~~~Gt~~df~~lv~~aH~~------Gi~VilD~V~NH 101 (496)
T 4gqr_A 69 LCTRSGNEDEFRNMVTRCNNV------GVRIYVDAVINH 101 (496)
T ss_dssp SCBTTBCHHHHHHHHHHHHHT------TCEEEEEECCSE
T ss_pred eCCCCCCHHHHHHHHHHHHHC------CCEEEEEEccCc
Confidence 456779999999999999999 999999998754
No 241
>3h0g_K DNA-directed RNA polymerase II subunit RPB11; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=29.03 E-value=2e+02 Score=22.54 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=42.2
Q ss_pred ccEEEEEecCCCCCC-HHHHHHHHH-hcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHHhcCccc
Q 011057 373 VPLVAFSLKDNKRHD-EFEVAELLR-RFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDSLPSK 450 (494)
Q Consensus 373 ~~~v~f~~~~~~~~~-~~~l~~~L~-~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~~~~~~ 450 (494)
-+-..|.+.+. +.. ..-+...|. +.++.+.+|..|--....-.+||-+....++ ++.+.++++.+.+.+..+.+.
T Consensus 27 ~n~~~f~i~~E-DHTLgNlLr~~Llk~p~V~fAgY~vpHPle~~~~lrIqT~~~~~p--~eaL~~al~~L~~~~~~l~~~ 103 (123)
T 3h0g_K 27 PNAAVVTLEKE-DHTLANMLANQLLSDERVLFAGYKVPHPLNHNFILRVQTVEDCSP--KQVIVDAAKSLITHLEEIKVN 103 (123)
T ss_dssp TTEEEEEEESC-CSSHHHHHHHTGGGSTTCSCBCCBCSCTTSCEEEEEEECCSSSCS--HHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEeCC-CcchHHHHHHHHhcCCCeeEeeecCCCCCCCceEEEEEECCCCCH--HHHHHHHHHHHHHHHHHHHHH
Confidence 35566777553 223 334555444 4466667777664455677889987655454 333445555555555444444
Q ss_pred c
Q 011057 451 V 451 (494)
Q Consensus 451 ~ 451 (494)
|
T Consensus 104 F 104 (123)
T 3h0g_K 104 F 104 (123)
T ss_dssp H
T ss_pred H
Confidence 4
No 242
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=28.71 E-value=53 Score=23.40 Aligned_cols=46 Identities=17% Similarity=0.021 Sum_probs=30.3
Q ss_pred CHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHH
Q 011057 387 DEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDIT 438 (494)
Q Consensus 387 ~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~ 438 (494)
+++.+.++|...|+-.. .. .+..+.||-+++..+.++.+.+.+.|+
T Consensus 22 ~A~~l~~~L~~~G~~a~--i~----~~~~~yRV~vGpf~s~~~A~~~~~~L~ 67 (81)
T 1uta_A 22 QAETVRAQLAFEGFDSK--IT----TNNGWNRVVIGPVKGKENADSTLNRLK 67 (81)
T ss_dssp HHHHHHHHHHHHTCCEE--EE----ECSSSEEEEESSCBTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCeE--EE----eCCcEEEEEECCcCCHHHHHHHHHHHH
Confidence 57789999999887532 21 133457888888778776655444443
No 243
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=27.87 E-value=2.4e+02 Score=24.94 Aligned_cols=77 Identities=8% Similarity=-0.003 Sum_probs=42.7
Q ss_pred EEeCCCcch-------HHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHHHH
Q 011057 157 IVTGANVQV-------CWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLA 229 (494)
Q Consensus 157 vi~~~~~h~-------s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~la~ 229 (494)
++++...++ .+.++++..|..+..+..+.+ ..-..+.++..+..+...|++.... . +.+.++.+.++
T Consensus 13 ~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~~vdgiI~~~~~-~----~~~~~~~~~~~ 86 (293)
T 3l6u_A 13 FTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQNS-RISEREQILEFVHLKVDAIFITTLD-D----VYIGSAIEEAK 86 (293)
T ss_dssp EEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSSC-HHHHHHHHHHHHHTTCSEEEEECSC-T----TTTHHHHHHHH
T ss_pred EEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCC-HHHHHHHHHHHHHcCCCEEEEecCC-h----HHHHHHHHHHH
Confidence 456655543 344556777998888775432 1122345556666677777765332 2 23445556666
Q ss_pred HhhcccCCCceE-EEec
Q 011057 230 EKNKETGWDTPI-HVDA 245 (494)
Q Consensus 230 ~~~~~~~~~~~l-~vD~ 245 (494)
+. ++++ .+|.
T Consensus 87 ~~------~iPvV~~~~ 97 (293)
T 3l6u_A 87 KA------GIPVFAIDR 97 (293)
T ss_dssp HT------TCCEEEESS
T ss_pred Hc------CCCEEEecC
Confidence 66 7654 4443
No 244
>1twf_K B13.6, DNA-directed RNA polymerase II 13.6 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.2 PDB: 1i3q_K 1i6h_K 1k83_K* 1nik_K 1nt9_K 1pqv_K 1r5u_K 1r9s_K* 1r9t_K* 1sfo_K* 1twa_K* 1twc_K* 1i50_K* 1twg_K* 1twh_K* 1wcm_K 1y1v_K 1y1w_K 1y1y_K 1y77_K* ...
Probab=27.41 E-value=93 Score=24.36 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=42.4
Q ss_pred ccEEEEEecCCCCCC-HHHHHHHHH-hcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHHHHHHHhcCccc
Q 011057 373 VPLVAFSLKDNKRHD-EFEVAELLR-RFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDSLPSK 450 (494)
Q Consensus 373 ~~~v~f~~~~~~~~~-~~~l~~~L~-~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~~~~~l~~~~~~ 450 (494)
-+...|.+.+.+ .. ..-+...|. +.++.+.+|..|--....-.+||-+....++ .+.+.++++.+.+.+..+.+.
T Consensus 28 ~n~~~f~i~~ED-HTLgNlLr~~Llk~p~V~fAgY~vpHPl~~~~~lrIqT~~~~~p--~eaL~~a~~~L~~~~~~l~~~ 104 (120)
T 1twf_K 28 PNAVVITFEKED-HTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDP--KDALKNACNSIINKLGALKTN 104 (120)
T ss_dssp TTEEEEEEESCC-HHHHHHHHHHHTTCTTEEEEEEECSCTTSCEEEEEEEECTTCCH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCC-chHHHHHHHHHhhCCCeeEEeeecCCCCCCccEEEEEECCCCCH--HHHHHHHHHHHHHHHHHHHHH
Confidence 355666665531 11 234444444 4577778887775556777899988765555 233344444444444444444
Q ss_pred c
Q 011057 451 V 451 (494)
Q Consensus 451 ~ 451 (494)
+
T Consensus 105 f 105 (120)
T 1twf_K 105 F 105 (120)
T ss_dssp H
T ss_pred H
Confidence 4
No 245
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=25.91 E-value=70 Score=22.51 Aligned_cols=47 Identities=15% Similarity=0.044 Sum_probs=30.8
Q ss_pred CHHHHHHHHHhcCceeeccccCCCCCCceEEEEEeccCCChHHHHHHHHHHHH
Q 011057 387 DEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITK 439 (494)
Q Consensus 387 ~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRvs~~~~~t~~~id~~i~~l~~ 439 (494)
+++.+.++|...|+-.. .. .+..+.||-+++..+.++.+.+++.|+.
T Consensus 22 ~A~~~~~~L~~~g~~~~--i~----~~~~~yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 22 NADSLASNAEAKGFDSI--VL----LKDGLYKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp HHHHHHHHHHHHTCCEE--EE----EETTEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCeE--Ee----cCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 57788899998886432 21 2334678888887777766655554443
No 246
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=23.77 E-value=1.1e+02 Score=28.83 Aligned_cols=54 Identities=17% Similarity=0.079 Sum_probs=38.4
Q ss_pred ceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEeCCCcchHHHHHHHHcCCeeEEEecc
Q 011057 119 VGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLS 184 (494)
Q Consensus 119 ~~~~t~ggt~a~~~a~~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~ 184 (494)
.++-+++|..+.-+|+.+.+. |. +..|++|...-..-...++.+|++|+.++..
T Consensus 89 ~Vv~aSsGN~g~alA~~aa~~---------G~---~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 89 TLIEPTSGNMGISMAFMAAMK---------GY---KMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp EEEEECSSHHHHHHHHHHHHH---------TC---EEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred EEEEeCCcHHHHHHHHHHHHc---------CC---cEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 355666788887767665533 22 2478888887777777889999999988743
No 247
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=23.76 E-value=1.4e+02 Score=25.84 Aligned_cols=35 Identities=11% Similarity=-0.035 Sum_probs=27.7
Q ss_pred CCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEE
Q 011057 202 NTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIH 242 (494)
Q Consensus 202 ~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~ 242 (494)
.+..|++-...+..|.....+++.++|++| ++.++
T Consensus 159 ~Pa~vicEi~~~~dG~mar~~~l~~fA~~h------~l~ii 193 (204)
T 1tks_A 159 QPAGVICELVRDEDGLMMRLDDCIQFGKKH------GIKII 193 (204)
T ss_dssp CSBEEEEEBBCTTTCCBCBHHHHHHHHHHH------TCCEE
T ss_pred CceEEEEEEeECCCCCcCCHHHHHHHHHHc------CCcEE
Confidence 466666555547889999999999999999 87664
No 248
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=23.49 E-value=40 Score=33.23 Aligned_cols=33 Identities=12% Similarity=0.007 Sum_probs=28.5
Q ss_pred CCCCcccccCHHHHHHHHHHhhcccCCCceEEEeccccc
Q 011057 211 GSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGG 249 (494)
Q Consensus 211 ~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~ 249 (494)
.....|+.++++++++-||++ |+-|++|.+.-.
T Consensus 57 idp~~Gt~~dfk~Lv~~aH~~------Gi~VilD~V~NH 89 (448)
T 1g94_A 57 LQSRGGNRAQFIDMVNRCSAA------GVDIYVDTLINH 89 (448)
T ss_dssp SCBTTBCHHHHHHHHHHHHHT------TCEEEEEEECSE
T ss_pred cCCCCCCHHHHHHHHHHHHHC------CCEEEEEEeecc
Confidence 345669999999999999999 999999987643
No 249
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=22.80 E-value=2.9e+02 Score=24.99 Aligned_cols=67 Identities=7% Similarity=-0.103 Sum_probs=39.2
Q ss_pred HHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEE-Eec
Q 011057 167 WEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIH-VDA 245 (494)
Q Consensus 167 ~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~-vD~ 245 (494)
+.+.++..|..+.....+.+ ..-..+.++..+..+...|++.... + ....+..+.+++. +++++ +|.
T Consensus 25 i~~~a~~~g~~~~~~~~~~~-~~~~~~~i~~~~~~~vdgiIi~~~~-~----~~~~~~~~~~~~~------giPvV~~~~ 92 (330)
T 3uug_A 25 IVKQLQEAGYKTDLQYADDD-IPNQLSQIENMVTKGVKVLVIASID-G----TTLSDVLKQAGEQ------GIKVIAYDR 92 (330)
T ss_dssp HHHHHHHTTCEEEEEECTTC-HHHHHHHHHHHHHHTCSEEEECCSS-G----GGGHHHHHHHHHT------TCEEEEESS
T ss_pred HHHHHHHcCCEEEEeeCCCC-HHHHHHHHHHHHHcCCCEEEEEcCC-c----hhHHHHHHHHHHC------CCCEEEECC
Confidence 45567778988877764432 1222345666677777777764432 2 2345556667777 77654 443
No 250
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=22.08 E-value=3e+02 Score=24.69 Aligned_cols=68 Identities=7% Similarity=-0.038 Sum_probs=38.8
Q ss_pred HHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhhhCCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEE-Ee
Q 011057 166 CWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIH-VD 244 (494)
Q Consensus 166 s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~-vD 244 (494)
.+.+.++..|..+.....+.+ ..-..+.++.++..+...|++...... .+.+..+.+++. +++++ +|
T Consensus 23 gi~~~a~~~g~~~~~~~~~~~-~~~~~~~i~~l~~~~vdgiIi~~~~~~-----~~~~~~~~~~~~------~iPvV~~~ 90 (313)
T 3m9w_A 23 IFVKKAESLGAKVFVQSANGN-EETQMSQIENMINRGVDVLVIIPYNGQ-----VLSNVVKEAKQE------GIKVLAYD 90 (313)
T ss_dssp HHHHHHHHTSCEEEEEECTTC-HHHHHHHHHHHHHTTCSEEEEECSSTT-----SCHHHHHHHHTT------TCEEEEES
T ss_pred HHHHHHHHcCCEEEEECCCCC-HHHHHHHHHHHHHcCCCEEEEeCCChh-----hhHHHHHHHHHC------CCeEEEEC
Confidence 355567778988887765432 112234455666667777766543222 245556666666 77654 44
Q ss_pred c
Q 011057 245 A 245 (494)
Q Consensus 245 ~ 245 (494)
.
T Consensus 91 ~ 91 (313)
T 3m9w_A 91 R 91 (313)
T ss_dssp S
T ss_pred C
Confidence 3
No 251
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=21.99 E-value=2.8e+02 Score=23.56 Aligned_cols=73 Identities=16% Similarity=0.012 Sum_probs=45.6
Q ss_pred HHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhh-hCCeEEEEeeCCCCcccccCHHHHHHHHHHhhcccCCCceEEEe
Q 011057 166 CWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVD-ENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVD 244 (494)
Q Consensus 166 s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~-~~t~~vv~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD 244 (494)
.+....+..|.+++.+.. .+..+++.+++. .++.+|.++.-.+ .....++++.+.+++... ..++.+++=
T Consensus 107 ~va~~l~~~G~~v~~LG~-----~vp~~~l~~~~~~~~~d~v~lS~~~~--~~~~~~~~~i~~l~~~~~--~~~~~v~vG 177 (210)
T 1y80_A 107 LVAMMLESGGFTVYNLGV-----DIEPGKFVEAVKKYQPDIVGMSALLT--TTMMNMKSTIDALIAAGL--RDRVKVIVG 177 (210)
T ss_dssp HHHHHHHHTTCEEEECCS-----SBCHHHHHHHHHHHCCSEEEEECCSG--GGTHHHHHHHHHHHHTTC--GGGCEEEEE
T ss_pred HHHHHHHHCCCEEEECCC-----CCCHHHHHHHHHHcCCCEEEEecccc--ccHHHHHHHHHHHHhcCC--CCCCeEEEE
Confidence 344556777888877653 367788877665 4677777666433 345667888877777510 003677776
Q ss_pred ccc
Q 011057 245 AAS 247 (494)
Q Consensus 245 ~a~ 247 (494)
|+.
T Consensus 178 G~~ 180 (210)
T 1y80_A 178 GAP 180 (210)
T ss_dssp STT
T ss_pred CCC
Confidence 543
No 252
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=21.27 E-value=2.4e+02 Score=23.03 Aligned_cols=82 Identities=15% Similarity=0.093 Sum_probs=48.8
Q ss_pred CeEEe---CCCcch----HHHHHHHHcCCeeEEEeccCCccccCHHHHHHhhh-hCCeEEEEeeCCCCcccccCHHHHHH
Q 011057 155 PNIVT---GANVQV----CWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVD-ENTICVAAILGSTLNGEFEDVKLLND 226 (494)
Q Consensus 155 ~~vi~---~~~~h~----s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~-~~t~~vv~~~~~~~tG~~~~l~~I~~ 226 (494)
++|++ ....|. .+....+..|.+|+.... ...++++.+++. .++.+|.++.-.+ .....++++.+
T Consensus 19 ~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~-----~~p~e~lv~aa~~~~~diV~lS~~~~--~~~~~~~~~i~ 91 (161)
T 2yxb_A 19 YKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGL-----RQTPEQVAMAAVQEDVDVIGVSILNG--AHLHLMKRLMA 91 (161)
T ss_dssp CEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCS-----BCCHHHHHHHHHHTTCSEEEEEESSS--CHHHHHHHHHH
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCC-----CCCHHHHHHHHHhcCCCEEEEEeech--hhHHHHHHHHH
Confidence 45543 445663 344456667888776653 367787776665 4666776665443 44566788888
Q ss_pred HHHHhhcccCCCceEEEecc
Q 011057 227 LLAEKNKETGWDTPIHVDAA 246 (494)
Q Consensus 227 la~~~~~~~~~~~~l~vD~a 246 (494)
.+++... .++.+++=|+
T Consensus 92 ~L~~~g~---~~i~v~vGG~ 108 (161)
T 2yxb_A 92 KLRELGA---DDIPVVLGGT 108 (161)
T ss_dssp HHHHTTC---TTSCEEEEEC
T ss_pred HHHhcCC---CCCEEEEeCC
Confidence 7777510 0356666543
No 253
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Probab=21.01 E-value=52 Score=32.72 Aligned_cols=33 Identities=12% Similarity=0.027 Sum_probs=28.2
Q ss_pred CCCCcccccCHHHHHHHHHHhhcccCCCceEEEeccccc
Q 011057 211 GSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGG 249 (494)
Q Consensus 211 ~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~ 249 (494)
.....|+.++++++++-||++ |+-|++|.+.-.
T Consensus 71 id~~~Gt~~df~~lv~~aH~~------Gi~VilD~V~NH 103 (483)
T 3bh4_A 71 VRTKYGTKSELQDAIGSLHSR------NVQVYGDVVLNH 103 (483)
T ss_dssp SSCSSCCHHHHHHHHHHHHHT------TCEEEEEECCSE
T ss_pred cCCCCCCHHHHHHHHHHHHHC------CCEEEEEEccCc
Confidence 344569999999999999999 999999987643
No 254
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*
Probab=20.96 E-value=54 Score=32.15 Aligned_cols=33 Identities=15% Similarity=0.008 Sum_probs=28.2
Q ss_pred CCCCcccccCHHHHHHHHHHhhcccCCCceEEEeccccc
Q 011057 211 GSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGG 249 (494)
Q Consensus 211 ~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~ 249 (494)
.+...|+.++++++++-||++ |+-|++|.+.-.
T Consensus 79 id~~~Gt~~df~~lv~~~H~~------Gi~VilD~V~NH 111 (435)
T 1mxg_A 79 VETRFGSKEELVRLIQTAHAY------GIKVIADVVINH 111 (435)
T ss_dssp SSCSSCCHHHHHHHHHHHHHT------TCEEEEEECCSB
T ss_pred CCCCCCCHHHHHHHHHHHHHC------CCEEEEEECccc
Confidence 344568999999999999999 999999997754
No 255
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=20.91 E-value=53 Score=32.60 Aligned_cols=33 Identities=15% Similarity=0.026 Sum_probs=28.2
Q ss_pred CCCCcccccCHHHHHHHHHHhhcccCCCceEEEeccccc
Q 011057 211 GSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGG 249 (494)
Q Consensus 211 ~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~ 249 (494)
.....|+.++++++++-||++ |+-|++|.+.-.
T Consensus 73 idp~~Gt~~df~~lv~~aH~~------Gi~VilD~V~NH 105 (480)
T 1ud2_A 73 VRTKYGTKAQLERAIGSLKSN------DINVYGDVVMNH 105 (480)
T ss_dssp SSCSSCCHHHHHHHHHHHHHT------TCEEEEEECCSE
T ss_pred cCCCCCCHHHHHHHHHHHHHC------CCEEEEEEccCc
Confidence 344569999999999999999 999999987753
No 256
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=20.54 E-value=57 Score=31.96 Aligned_cols=32 Identities=9% Similarity=0.062 Sum_probs=26.2
Q ss_pred CCCCcccccCHHHHHHHHHHhhcccCCCceEEEecccc
Q 011057 211 GSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASG 248 (494)
Q Consensus 211 ~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~ 248 (494)
++...|+.++++++++-||++ |+-|++|.+.-
T Consensus 62 idp~~Gt~~df~~lv~~aH~~------Gi~VilD~V~N 93 (441)
T 1lwj_A 62 FKAEYGSEREFKEMIEAFHDS------GIKVVLDLPIH 93 (441)
T ss_dssp ECTTTCCHHHHHHHHHHHHHT------TCEEEEEECTT
T ss_pred cCcccCCHHHHHHHHHHHHHC------CCEEEEEeCCC
Confidence 344568888999999999999 99999998764
No 257
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=20.43 E-value=55 Score=32.91 Aligned_cols=33 Identities=9% Similarity=-0.106 Sum_probs=28.3
Q ss_pred CCCCcccccCHHHHHHHHHHhhcccCCCceEEEeccccc
Q 011057 211 GSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGG 249 (494)
Q Consensus 211 ~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~ 249 (494)
.....|+.++++++++-||++ |+-|++|.+.-.
T Consensus 74 idp~~Gt~~dfk~Lv~~aH~~------Gi~VilD~V~NH 106 (515)
T 1hvx_A 74 VRTKYGTKAQYLQAIQAAHAA------GMQVYADVVFDH 106 (515)
T ss_dssp SSCSSCCHHHHHHHHHHHHHT------TCEEEEEECCSE
T ss_pred cCCCCCCHHHHHHHHHHHHHC------CCEEEEEEecCC
Confidence 344569999999999999999 999999997654
No 258
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Probab=20.26 E-value=56 Score=32.49 Aligned_cols=33 Identities=12% Similarity=0.015 Sum_probs=28.2
Q ss_pred CCCCcccccCHHHHHHHHHHhhcccCCCceEEEeccccc
Q 011057 211 GSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGG 249 (494)
Q Consensus 211 ~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~ 249 (494)
.....|+.++++++++-||++ |+-|++|.+.-.
T Consensus 75 idp~~Gt~~df~~Lv~~aH~~------Gi~VilD~V~NH 107 (485)
T 1wpc_A 75 VRTKYGTRSQLQAAVTSLKNN------GIQVYGDVVMNH 107 (485)
T ss_dssp SSCSSCCHHHHHHHHHHHHHT------TCEEEEEECCSE
T ss_pred cCCCCCCHHHHHHHHHHHHHC------CCEEEEEEeccc
Confidence 344569999999999999999 999999987643
Done!