RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 011057
(494 letters)
>gnl|CDD|130848 TIGR01788, Glu-decarb-GAD, glutamate decarboxylase. This model
represents the pyridoxal phosphate-dependent glutamate
(alpha) decarboxylase found in bacteria (low and hi-GC
gram positive, proteobacteria and cyanobacteria),
plants, fungi and at least one archaon (Methanosarcina).
The product of the enzyme is gamma-aminobutyrate (GABA).
Length = 431
Score = 749 bits (1935), Expect = 0.0
Identities = 271/432 (62%), Positives = 335/432 (77%), Gaps = 3/432 (0%)
Query: 16 STFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKL 75
S + SR V +P++ MPE +P +AAYQ+I+DEL LDGNPRLNLA+FVTTWMEPE KL
Sbjct: 1 SAYGSRAVSTGIPKYRMPEEEMPPDAAYQLIHDELSLDGNPRLNLATFVTTWMEPEARKL 60
Query: 76 MMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGL 135
M INKN +D DEYP T E++NRCVN++A L++AP +D+E AVG T+GSSEAIML GL
Sbjct: 61 MDETINKNMIDKDEYPQTAEIENRCVNMLADLWHAPAKDAE-AVGTSTIGSSEAIMLGGL 119
Query: 136 AFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKA 195
A K +W+ + +A GKP DKPN+V G+NVQVCWEKFARYF+VEL+EV + G YV+DP +
Sbjct: 120 AMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARYFDVELREVPMDPGRYVIDPEQV 179
Query: 196 VEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFL 255
VE VDENTI V ILG+T GE+EDVK LND L E N +TGWD PIHVDAASGGFIAPF+
Sbjct: 180 VEAVDENTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFV 239
Query: 256 YPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFT 315
YP+LEWDFRLP VKSINVSGHKYGLVY G+GWVIWR++E LPEELIFH+NYLG D+PTFT
Sbjct: 240 YPDLEWDFRLPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDEPTFT 299
Query: 316 LNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPL 375
LNFS+ ++QVIAQYY +RLG EGYR +M+N + A L E + K G F I+S G+PL
Sbjct: 300 LNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPL 359
Query: 376 VAFSLKD--NKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERL 433
VAF LKD + + ++++ LR GWIVPAYT+P +A+ I V+R+V+RE FSR LAE L
Sbjct: 360 VAFKLKDDADPGYTLYDLSHRLRERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAELL 419
Query: 434 VLDITKVLHELD 445
+ DI L L+
Sbjct: 420 IEDIEAALAYLE 431
>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent
proteins [Amino acid transport and metabolism].
Length = 460
Score = 387 bits (996), Expect = e-131
Identities = 169/440 (38%), Positives = 231/440 (52%), Gaps = 16/440 (3%)
Query: 9 ESDESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWM 68
S +S+ F + P P + E A +I DEL LDG+PR NLA F T +
Sbjct: 15 YSGDSLSPLFGALSDSRMAPEKGEPLEEVLDELAELLIKDELYLDGHPRANLAGFCPTRV 74
Query: 69 EPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSE 128
P +L+++A+NKN D DE P EL+ R VN+++ L AP E A G T G +E
Sbjct: 75 PPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAP----EEASGTFTSGGTE 130
Query: 129 AIMLAGLAFKRKWQNKRKAE-GKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGY 187
A +LA LA + +W+ + AE GKP KPNIV +EK ARY + L+ V
Sbjct: 131 ANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPTD 190
Query: 188 YVMDPVKAVEMVDENTI--CVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDA 245
Y +D E +DENTI V G+T G +D++ L D+ E + +HVDA
Sbjct: 191 YRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEE------YGIWLHVDA 244
Query: 246 ASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHIN 305
A GGF+ PFL P+ WDF L V SI V GHKYGL G G V++R++E L LIF
Sbjct: 245 AFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADY 304
Query: 306 YLGADQ-PTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRF 364
YL P FT+ S+ Q +A Y L RLG EGYR +++ E A L E LEK G F
Sbjct: 305 YLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDF 364
Query: 365 NIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIRED 424
+V+ + +P+VAF LKD++ +++E L R GW VPA +P + V R+
Sbjct: 365 ELVN-EPELPIVAFRLKDDEDTL-ADLSERLDRRGWQVPAQLLPKGLAIVFGTHVTGRQG 422
Query: 425 FSRTLAERLVLDITKVLHEL 444
+A L+ D + L L
Sbjct: 423 LKFIVANLLITDREESLLAL 442
>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase
conserved domain.
Length = 373
Score = 375 bits (965), Expect = e-127
Identities = 116/385 (30%), Positives = 164/385 (42%), Gaps = 48/385 (12%)
Query: 33 PENSIP-KEAAYQIIND-ELMLDGNPRLNLASFVTTWMEPECDKLMMA------------ 78
P P A II + L + G+ R N+ VTTW P A
Sbjct: 1 PGYLRPLLPEAAPIIPEPLLDILGDIRKNIMPGVTTWHSPNFHAYFPAGNSYPSLLGDML 60
Query: 79 --AINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLED--SETAVGVGTVGSSEAIMLAG 134
AIN N + P TEL+N ++ +A++ P E S GV GSSE+ +LA
Sbjct: 61 SDAINCNGFTWESSPACTELENVVMDWLAKMLGLPKEFLGSGEGGGVLQGGSSESNLLAL 120
Query: 135 LAFKRKWQNKRKAEGKPF-DKPNIVTGANVQVCWEKFARYFEVELKEVKLSE--GYYVMD 191
LA + KW + KA GKP K T EK A VEL+E+ E MD
Sbjct: 121 LAARTKWIRRMKAAGKPSLGKLVAYTSDQAHSSIEKAALIAGVELREIPTDENGKMRGMD 180
Query: 192 PVKAVEMVDENT---ICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASG 248
KA+E EN V A LG+T +G F+ ++ L D+ + +D +HVDAA
Sbjct: 181 LEKAIEEDKENGLIPFFVCATLGTTGSGAFDPLQELGDICNK------YDLWLHVDAAYA 234
Query: 249 G--FIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINY 306
G FI P W F + S + + HK+ LV + R+K L + L F+ Y
Sbjct: 235 GSAFICPEFRH---WLFGIERADSFSFNPHKWMLVLLDCSALWVRDKGALQQALQFNPEY 291
Query: 307 LG---------ADQPTFTLNFSKGSSQVIAQYYQLIR-LGFEGYRNVMENCHENAMVLKE 356
LG D + + S+ I + + ++R G EG +N + E A +
Sbjct: 292 LGHNDKQSDVAVDYGDWQIPLSRR--FRILKLWFVLRSYGVEGLQNQIRRHVELAKYFEA 349
Query: 357 GLEKTGRFNIVSKDEGVPLVAFSLK 381
+ K RF I + G+ LV F LK
Sbjct: 350 LVRKDSRFEIC-AERGLGLVCFRLK 373
>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD correspond to DOPA/tyrosine decarboxylase
(DDC), histidine decarboxylase (HDC), and glutamate
decarboxylase (GDC). DDC is active as a dimer and
catalyzes the decarboxylation of tyrosine. GDC catalyzes
the decarboxylation of glutamate and HDC catalyzes the
decarboxylation of histidine.
Length = 345
Score = 321 bits (824), Expect = e-106
Identities = 126/394 (31%), Positives = 180/394 (45%), Gaps = 63/394 (15%)
Query: 59 NLASFVTTWMEPECDKLMMAAINKNYVDM--DEYPVTTELQNRCVNIIARLFNAPLEDSE 116
LA FVTT M+P L M KN +D DE P TE++ VN +A+LF P SE
Sbjct: 1 FLAGFVTT-MDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLP---SE 56
Query: 117 TAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA-EGKPFDKPNIVTGANVQVCWEKFARYFE 175
A GV T G SE+ +LA LA + + + + KA G+ DK IV V EK A Y +
Sbjct: 57 DADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLD 116
Query: 176 VELKEVKLSEGYYVMDPVKAVEMVDE------NTICVAAILGSTLNGEFEDVKLLNDLLA 229
V+++ V + E MDP +DE N I V A G+T G + ++ + DL
Sbjct: 117 VKVRLVPVDEDG-RMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAE 175
Query: 230 EKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVI 289
+ D +HVDAA GGF+ PF P DF + V SI+V HKYGLV G V+
Sbjct: 176 KY------DLWLHVDAAYGGFLLPFPEPRH-LDFGIERVDSISVDPHKYGLVPLGCSAVL 228
Query: 290 WRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHE 349
R + + L R G +GY ++ +
Sbjct: 229 VR---------------------------------ALKLWATLRRFGRDGYGEHIDRIVD 255
Query: 350 NAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDE--FEVAELLR-RFGWIVPAYT 406
A L E + F ++ + + LV F LK + + DE +++++ L R GW VPA T
Sbjct: 256 LAKYLAELIRADPGFELL-GEPNLSLVCFRLKPSVKLDELNYDLSDRLNERGGWHVPATT 314
Query: 407 MPADAQHITVLRVVIREDF-SRTLAERLVLDITK 439
+ VLR V+ +R A+ L+ DI +
Sbjct: 315 LG----GPNVLRFVVTNPLTTRDDADALLEDIER 344
>gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA. Members
of this protein family are the archaeal form, MnfA, of
tyrosine decarboxylase, and are involved in methanofuran
biosynthesis. Members show clear homology to the
Enterococcus form, Tdc, that is involved in tyrosine
decarboxylation for resistance to acidic conditions
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 373
Score = 156 bits (397), Expect = 3e-43
Identities = 104/364 (28%), Positives = 170/364 (46%), Gaps = 37/364 (10%)
Query: 80 INKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKR 139
I N D +P T +++ V + L + P A G G +EA + A A K
Sbjct: 44 IETNLGDPGLFPGTKKIEEEVVGSLGNLLHLP-----DAYGYIVSGGTEANIQAVRAAKN 98
Query: 140 KWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMV 199
+ +++ PNI+ + +EK A +EL+ L E Y +D +++
Sbjct: 99 LAREEKR-------TPNIIVPESAHFSFEKAAEMLGLELRYAPLDE-DYTVDVKDVEDLI 150
Query: 200 DENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFL---Y 256
D+NTI + I G+T G+ +D++ L+ + A +N +HVDAA GGF+ PFL Y
Sbjct: 151 DDNTIGIVGIAGTTELGQIDDIEELSKI-ALEN-----GIYLHVDAAFGGFVIPFLKKGY 204
Query: 257 PELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTL 316
+DF LP V+SI + HK GL G +++R+K L + L YL + T+
Sbjct: 205 NPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYL-KYLSVDAPYL-TVKKQATI 262
Query: 317 NFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLV 376
++ + A Y + LG EGYR ++ C EN L E L+K G ++ + + +V
Sbjct: 263 TGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKIGFEPVI--EPVLNIV 320
Query: 377 AFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLD 436
AF + D + EV + LR GW V + LR+V+ +R E + D
Sbjct: 321 AFEVDDPE-----EVRKKLRDRGWYVSV------TRCPKALRIVVMPHVTREHIEEFLED 369
Query: 437 ITKV 440
+ ++
Sbjct: 370 LKEI 373
>gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional.
Length = 371
Score = 154 bits (391), Expect = 2e-42
Identities = 117/354 (33%), Positives = 166/354 (46%), Gaps = 40/354 (11%)
Query: 90 YPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEG 149
+P T +L+ V ++ L + P A G T G +EA + A A + N KA
Sbjct: 54 FPGTAKLEEEAVEMLGELLHLP-----DAYGYITSGGTEANIQAVRAAR----NLAKA-- 102
Query: 150 KPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVE-MVDENTICVAA 208
+KPNIV + ++K A VEL+ L + Y V VKAVE ++D+NTI +
Sbjct: 103 ---EKPNIVVPESAHFSFDKAADMLGVELRRAPLDDDYRVD--VKAVEDLIDDNTIGIVG 157
Query: 209 ILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLV 268
I G+T G+ + + L+ + E +HVDAA GGF+ PFL +DF LP V
Sbjct: 158 IAGTTELGQVDPIPELSKIALEN------GIFLHVDAAFGGFVIPFLDDPPNFDFSLPGV 211
Query: 269 KSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYL-GADQPTFTLNFSKGSSQVIA 327
SI + HK GL G +++R++ L + L YL Q T T S G+ V A
Sbjct: 212 DSITIDPHKMGLAPIPAGGILFRDESYL-DALAVDTPYLTSKKQATLTGTRS-GAG-VAA 268
Query: 328 QYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHD 387
Y + LG EGYR V+E C EN L E L++ G F V + + +VAF +
Sbjct: 269 TYAVMKYLGREGYRKVVERCMENTRWLAEELKERG-FEPVIEPV-LNIVAFDDPNPD--- 323
Query: 388 EFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVL 441
EV E LR GW V P LR+V +R E + D+ +V
Sbjct: 324 --EVREKLRERGWRVSVTRCPE------ALRIVCMPHVTREHIENFLEDLKEVK 369
>gnl|CDD|235068 PRK02769, PRK02769, histidine decarboxylase; Provisional.
Length = 380
Score = 62.4 bits (152), Expect = 2e-10
Identities = 71/310 (22%), Positives = 125/310 (40%), Gaps = 53/310 (17%)
Query: 71 ECDKLMMAAINK--NYVDMDEYPVTTELQNRCV-NIIARLFNAPLEDSETAVGVGTVGSS 127
+ +IN + YP+ + R V N A LF P +S G T G +
Sbjct: 38 ALKRFFSFSINNCGDPYSKSNYPLNSFDFERDVMNFFAELFKIPFNESW---GYITNGGT 94
Query: 128 EAIMLAGLAFKRKWQNKRKAEGKPFDKPN--IVTGANVQVCWEKFARYFEVELKEVK-LS 184
E + G R+ P+ + + K AR ++ + + L
Sbjct: 95 EGNLY-GCYLARELF------------PDGTLYYSKDTHYSVSKIARLLRIKSRVITSLP 141
Query: 185 EGYYVMDPVKAVEMVDENT----ICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTP 240
G +D + + EN I A I G+T+ G +++K + ++L + + D
Sbjct: 142 NGE--IDYDDLISKIKENKNQPPIIFANI-GTTMTGAIDNIKEIQEILKKIGID---DYY 195
Query: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKY-------GLVYAGIGWVIWRNK 293
IH DAA G I PF+ + F + SI +SGHK+ G+V A +V
Sbjct: 196 IHADAALSGMILPFVNNPPPFSFADG-IDSIAISGHKFIGSPMPCGIVLAKKKYV----- 249
Query: 294 EDLPEELIFHINYLGA-DQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAM 352
E + ++Y+G+ DQ T++ S+ + + + LG +G R +++C + A
Sbjct: 250 ----ERISVDVDYIGSRDQ---TISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQ 302
Query: 353 VLKEGLEKTG 362
+ L+ G
Sbjct: 303 YAVDRLQANG 312
>gnl|CDD|166673 PLN03032, PLN03032, serine decarboxylase; Provisional.
Length = 374
Score = 57.5 bits (139), Expect = 6e-09
Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 16/200 (8%)
Query: 169 KFARYFEVELKEV-KLSEGYYVMDPVKA--VEMVDENTICVAAILGSTLNGEFEDVKLLN 225
K AR + +E +V L G D ++ + D+ I I G+T+ G +D+
Sbjct: 126 KAARMYRMEAVKVPTLPSGEIDYDDLERALAKNRDKPAILNVNI-GTTVKGAVDDL---- 180
Query: 226 DLLAEKNKETGWDTP---IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVY 282
D + KE G+ IH D A G + PF+ E FR P + S++VSGHK+
Sbjct: 181 DRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKP-IGSVSVSGHKFLGCP 239
Query: 283 AGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRN 342
G + R K + L ++ YL + T + S+ + +Y L R G+ G +
Sbjct: 240 MPCGVALTRKKH--VKALSQNVEYLNSRDAT--IMGSRNGHAPLYLWYTLRRKGYRGIKR 295
Query: 343 VMENCHENAMVLKEGLEKTG 362
+++C NA LK+ L + G
Sbjct: 296 DVQHCMRNAHYLKDRLTEAG 315
>gnl|CDD|177904 PLN02263, PLN02263, serine decarboxylase.
Length = 470
Score = 55.2 bits (133), Expect = 4e-08
Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 22/161 (13%)
Query: 210 LGSTLNGEFEDVKLLNDLLAEKNKETGWDTP---IHVDAASGGFIAPFLYPELEWDFRLP 266
+G+T+ G +D+ DL+ + +E G+ IH D A G + PF+ + F+ P
Sbjct: 236 IGTTVKGAVDDL----DLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKKP 291
Query: 267 LVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTF-----TLNFSKG 321
+ S++VSGHK+ G I R + HIN L ++ T+ S+
Sbjct: 292 -IGSVSVSGHKFVGCPMPCGVQITRME---------HINVLSSNVEYLASRDATIMGSRN 341
Query: 322 SSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTG 362
I +Y L R G+ G++ ++ C NA LK+ L + G
Sbjct: 342 GHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREAG 382
>gnl|CDD|198302 cd03193, GST_C_Metaxin, C-terminal, alpha helical domain of Metaxin
and related proteins. Glutathione S-transferase (GST)
C-terminal domain family, Metaxin subfamily; composed of
metaxins and related proteins. Metaxin 1 is a component
of a preprotein import complex of the mitochondrial
outer membrane. It extends to the cytosol and is
anchored to the mitochondrial membrane through its
C-terminal domain. In mice, metaxin is required for
embryonic development. In humans, alterations in the
metaxin gene may be associated with Gaucher disease.
Metaxin 2 binds to metaxin 1 and may also play a role in
protein translocation into the mitochondria. Genome
sequencing shows that a third metaxin gene also exists
in zebrafish, Xenopus, chicken, and mammals. Sequence
analysis suggests that all three metaxins share a common
ancestry and that they possess similarity to GSTs. Also
included in the subfamily are uncharacterized proteins
with similarity to metaxins, including a novel GST from
Rhodococcus with toluene o-monooxygenase and
glutamylcysteine synthetase activities. Other members
are the cadmium-inducible lysosomal protein CDR-1 and
its homologs from C. elegans, and the failed axon
connections (fax) protein from Drosophila. CDR-1 is an
integral membrane protein that functions to protect
against cadmium toxicity and may also have a role in
osmoregulation to maintain salt balance in C. elegans.
The fax gene of Drosophila was identified as a genetic
modifier of Abelson (Abl) tyrosine kinase. The fax
protein is localized in cellular membranes and is
expressed in embryonic mesoderm and axons of the central
nervous system.
Length = 88
Score = 33.0 bits (76), Expect = 0.058
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 219 EDVKLLNDLLAEKNKETGW---DTPIHVDAASGGFIAPFLYPELEWDFRLPLVKS 270
ED++ L+ LL +K + D P VDA +A LYP + LV S
Sbjct: 26 EDLEALSTLLGDKK----FLFGDKPTSVDATVFAHLASILYPPEDSPLLRVLVAS 76
>gnl|CDD|163511 TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate
1-decarboxylase. This enzyme is proposed here to be a
form of aspartate 1-decarboxylase, pyridoxal-dependent,
that represents a non-orthologous displacement to the
more widely distributed pyruvoyl-dependent form
(TIGR00223). Aspartate 1-decarboxylase makes
beta-alanine, used usually in pathothenate biosynthesis,
by decarboxylation from asparatate. A number of species
with the PanB and PanC enzymes, however, lack PanD. This
protein family occurs in a number of Proteobacteria that
lack PanD. This enzyme family appears to be a
pyridoxal-dependent enzyme (see pfam00282). The family
was identified by Partial Phylogenetic Profiling;
members in Geobacter sulfurreducens, G. metallireducens,
and Pseudoalteromonas atlantica are clustered with the
genes for PanB and PanC. We suggest the gene symbol panP
(panthothenate biosynthesis enzyme, Pyridoxal-dependent)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pantothenate and coenzyme A].
Length = 522
Score = 32.7 bits (75), Expect = 0.46
Identities = 40/185 (21%), Positives = 78/185 (42%), Gaps = 17/185 (9%)
Query: 194 KAVEMVDENT--ICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFI 251
K E+ ++N + + + G+T G + + + D+ E HVDAA GG
Sbjct: 255 KCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQELG------CHFHVDAAWGG-- 306
Query: 252 APFLYPELEWDFR-LPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYL--- 307
A L + + S+ + HK V G G V++++ + + H Y+
Sbjct: 307 ATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDPALM-SAIEHHAEYILRK 365
Query: 308 -GADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNI 366
D + TL S+ ++ Y L +G +GY +++ E A + +++ F +
Sbjct: 366 GSKDLGSHTLEGSRPGMAMLV-YAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFEL 424
Query: 367 VSKDE 371
V++ E
Sbjct: 425 VTEPE 429
>gnl|CDD|134568 PRK01533, PRK01533, histidinol-phosphate aminotransferase;
Validated.
Length = 366
Score = 31.6 bits (71), Expect = 0.88
Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 31/208 (14%)
Query: 156 NIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLN 215
NIVT + A E+KEV L+ G Y +D + +V VD +T V +
Sbjct: 107 NIVTAGATFPQYRHHAIIEGCEVKEVALNNGVYDLDEISSV--VDNDTKIVWICNPNNPT 164
Query: 216 GEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKS----- 270
G + + + L + ++ +T I +D A ++ +PE LPL++
Sbjct: 165 GTYVNDRKLTQFIEGISE----NTLIVIDEAYYEYVTAKDFPE-----TLPLLEKHKNIL 215
Query: 271 -INVSGHKYGLVYAGIGWVIWRNKEDLPEE-----LIFHINYLGADQPTFTLNFSKGSSQ 324
+ YGL +G+ + E+L E+ L F+++ L Q T+ F G +
Sbjct: 216 VLRTFSKAYGLASFRVGYAV--GHEELIEKLNVVRLPFNVSSLA--QKAATIAF--GDDE 269
Query: 325 VIAQYYQLIRLGFEGYRNVMENCHENAM 352
I +++R+ EG R C EN +
Sbjct: 270 FIE---EIVRVNTEGLRQYESFCKENEI 294
>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase;
Provisional.
Length = 257
Score = 30.5 bits (70), Expect = 1.6
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 25/89 (28%)
Query: 168 EKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAIL-GST-LNG-EFEDVKLL 224
++ F + KEV+ +G YV D V+A + AAI G+ NG EDV L
Sbjct: 81 DEILDEFGIRYKEVE--DGLYVADSVEAA-----AKLAAAAIDAGAKIFNGVSVEDVILR 133
Query: 225 NDLLAEKNKETG----WDTPI-----HVD 244
D + G W TP+ HVD
Sbjct: 134 ED-----PRVAGVVINW-TPVEMAGLHVD 156
>gnl|CDD|99737 cd00613, GDC-P, Glycine cleavage system P-protein, alpha- and
beta-subunits. This family consists of Glycine cleavage
system P-proteins EC:1.4.4.2 from bacterial, mammalian
and plant sources. The P protein is part of the glycine
decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also
annotated as glycine cleavage system or glycine
synthase. GDC consists of four proteins P, H, L and T.
The reaction catalysed by this protein is: Glycine +
lipoylprotein <=> S-aminomethyldihydrolipoylprotein +
CO2. Alpha-beta-type dimers associate to form an
alpha(2)beta(2) tetramer, where the alpha- and
beta-subunits are structurally similar and appear to
have arisen by gene duplication and subsequent
divergence with a loss of one active site. The members
of this CD are widely dispersed among all three forms of
cellular life.
Length = 398
Score = 30.7 bits (70), Expect = 1.9
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 325 VIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTG 362
++A Y ++ LG EG + + E H NA L + L++ G
Sbjct: 292 LMAAMY-IVYLGPEGLKEIAERAHLNANYLAKRLKEVG 328
>gnl|CDD|133468 cd00476, SAICAR_synt, 5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR) synthase. SAICAR synthetase
(the PurC gene product) catalyzes the seventh step of
the de novo biosynthesis of purine nucleotides (also
reported as eighth step). It converts
5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP,
and L-aspartate into
5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR), ADP, and phosphate.
Length = 230
Score = 30.1 bits (68), Expect = 2.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 373 VPLVAFSLKDNKRHDEFEVAELLRRFGWI 401
PLV F KD+ HD + L R G+I
Sbjct: 110 PPLVEFFYKDDAEHDPIVSEDQLERLGFI 138
>gnl|CDD|219962 pfam08668, HDOD, HDOD domain.
Length = 195
Score = 29.5 bits (67), Expect = 2.6
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 387 DEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDIT 438
+E A LL G ++ +P + + +L V E S AER +L
Sbjct: 119 EEAFTAGLLHDIGKLILLSLLPDEYE--EILERVAAEGISLLEAERELLGTD 168
>gnl|CDD|233605 TIGR01865, cas_Csn1, CRISPR-associated protein Cas9/Csn1, subtype
II/NMEMI. CRISPR loci appear to be mobile elements with
a wide host range. This model represents a protein found
only in CRISPR-containing species, near other
CRISPR-associated proteins (cas), as part of the NMENI
subtype of CRISPR/Cas locus. The species range so far
for this protein is animal pathogens and commensals only
[Mobile and extrachromosomal element functions, Other].
Length = 805
Score = 30.1 bits (68), Expect = 3.2
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 445 DSLPSKVLVPASE-QNGRNGKKTEIETQREVTTYWRKFV-----SERKANNKNKI 493
DS+ +KVLV ASE Q + E E ++ + +W KF S+RK++ +
Sbjct: 616 DSISNKVLVLASENQEKGDQTPYEAEIVKKDSAFWNKFEAYVLISKRKSDKLTRA 670
>gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases. L-lactate
dehydrogenases (LDH) are tetrameric enzymes catalyzing
the last step of glycolysis in which pyruvate is
converted to L-lactate. This subgroup is composed
predominantly of bacterial LDHs and a few fungal LDHs.
Bacterial LDHs may be non-allosteric or may be activated
by an allosteric effector such as
fructose-1,6-bisphosphate. LDHs are part of the
NAD(P)-binding Rossmann fold superfamily, which includes
a wide variety of protein families including the
NAD(P)-binding domains of alcohol dehydrogenases,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate dehydrogenases,
formate/glycerate dehydrogenases, siroheme synthases,
6-phosphogluconate dehydrogenases, aminoacid
dehydrogenases, repressor rex, and NAD-binding potassium
channel domains, among others.
Length = 308
Score = 29.4 bits (67), Expect = 4.6
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 16/62 (25%)
Query: 119 VGVGTVGSSEA--IMLAGLAFKRKW----QNKRKAEGK--------PFDKPNIVTGANVQ 164
VG G VGS+ A ++L GLA + NK KAEG+ PF KP + +
Sbjct: 6 VGAGFVGSTTAYALLLRGLA--SEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYA 63
Query: 165 VC 166
C
Sbjct: 64 DC 65
>gnl|CDD|236491 PRK09377, tsf, elongation factor Ts; Provisional.
Length = 290
Score = 28.9 bits (66), Expect = 5.6
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 14/59 (23%)
Query: 146 KAEGKPFD-KPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVE-MVDEN 202
K EGKP + IV G + ++ KEV L E +V DP K V ++ E
Sbjct: 212 KEEGKPEEIVEKIVEG--------RLNKFL----KEVVLLEQPFVKDPKKTVGQLLKEA 258
>gnl|CDD|238138 cd00226, PRCH, Photosynthetic reaction center (RC) complex, subunit
H; RC is an integral membrane protein-pigment complex
which catalyzes light-induced reduction of ubiquinone to
ubiquinol, generating a transmembrane electrochemical
gradient of protons used to produce ATP by ATP synthase.
Subunit H is positioned mainly in the cytoplasm with one
transmembrane alpha helix. Provides proton transfer
pathway (water channels) connecting the terminal quinone
electron acceptor of RC, to the aqueous phase. Found in
photosynthetic bacteria: alpha, beta, and gamma
proteobacteria.
Length = 246
Score = 28.6 bits (64), Expect = 7.4
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 168 EKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILG 211
E+ RY EVEL G V+ P+ + V + + V AIL
Sbjct: 173 EQLFRYLEVELAG----GGRTVLLPMGFAK-VKSDRVKVTAILS 211
>gnl|CDD|176537 cd08595, PI-PLCc_zeta, Catalytic domain of metazoan
phosphoinositide-specific phospholipase C-zeta. This
family corresponds to the catalytic domain presenting in
metazoan phosphoinositide-specific phospholipase C
(PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a
signaling enzyme that hydrolyzes the membrane
phospholipids phosphatidylinositol-4,5-bisphosphate
(PIP2) to generate two important second messengers in
eukaryotic signal transduction cascades, inositol
1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG).
InsP3 triggers inflow of calcium from intracellular
stores, while DAG, together with calcium, activates
protein kinase C, which then phosphorylates other
molecules, leading to altered cellular activity. Calcium
is required for the catalysis. PI-PLC-zeta represents a
class of sperm-specific PI-PLC that has an N-terminal
EF-hand domain, a PLC catalytic core domain, and a
C-terminal C2 domain. The PLC catalytic core domain is a
TIM barrel with two highly conserved regions (X and Y)
split by a highly degenerate linker sequence. There is
one PLC-zeta isozyme (1). PLC-zeta plays a fundamental
role in vertebrate fertilization by initiating
intracellular calcium oscillations that trigger the
embryo development. However, the mechanism of its
activation still remains unclear. Aside from PI-PLC-zeta
identified in mammals, its eukaryotic homologs have been
classified with this family.
Length = 257
Score = 28.4 bits (63), Expect = 7.6
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 22/86 (25%)
Query: 74 KLMMAAINKNYVDMDEYPVTTELQNRC------------VNIIA-RLFNAPLEDSETAVG 120
K ++ + K + +YPV L+N C V+I+ +L AP++D T
Sbjct: 73 KEVITTVEKYAFEKSDYPVVLSLENHCSTEQQEIMAHYLVSILGEKLLRAPIDDPAT--- 129
Query: 121 VGTVGSSEAIMLAGLAFKRKWQNKRK 146
G + S EA L FK +NK+K
Sbjct: 130 -GELPSPEA-----LKFKILVKNKKK 149
>gnl|CDD|218890 pfam06089, Asparaginase_II, L-asparaginase II. This family
consists of several bacterial L-asparaginase II
proteins. L-asparaginase (EC:3.5.1.1) catalyzes the
hydrolysis of L-asparagine to L-aspartate and ammonium.
Rhizobium etli possesses two asparaginases: asparaginase
I, which is thermostable and constitutive, and
asparaginase II, which is thermolabile, induced by
asparagine and repressed by the carbon source.
Length = 325
Score = 28.3 bits (64), Expect = 8.4
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 9/65 (13%)
Query: 343 VMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLK--D-NKRHDEFEVAELLRRFG 399
+M V K G E G F +EG+ +LK D R E A LLR+ G
Sbjct: 240 LMRAAPGRL-VAKTGAE--GVFCAALPEEGL---GIALKIEDGATRAAEAVAAALLRQLG 293
Query: 400 WIVPA 404
+ P
Sbjct: 294 VLDPE 298
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.399
Gapped
Lambda K H
0.267 0.0638 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,619,953
Number of extensions: 2563439
Number of successful extensions: 2265
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2225
Number of HSP's successfully gapped: 32
Length of query: 494
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 393
Effective length of database: 6,457,848
Effective search space: 2537934264
Effective search space used: 2537934264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.5 bits)