RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 011057
(494 letters)
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase,
pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis
thaliana}
Length = 502
Score = 607 bits (1567), Expect = 0.0
Identities = 424/504 (84%), Positives = 457/504 (90%), Gaps = 12/504 (2%)
Query: 1 MVLSKTFSESDESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNL 60
MVLS SESD S+HSTFASRYVR SLPRF MPENSIPKEAAYQIINDELMLDGNPRLNL
Sbjct: 1 MVLSHAVSESDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNL 60
Query: 61 ASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVG 120
ASFVTTWMEPECDKL+M++INKNYVDMDEYPVTTELQNRCVN+IA LFNAPLE++ETAVG
Sbjct: 61 ASFVTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVG 120
Query: 121 VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKE 180
VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKP DKPNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 121 VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKE 180
Query: 181 VKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTP 240
VKLSEGYYVMDP +AV+MVDENTICVAAILGSTLNGEFEDVKLLNDLL EKNKETGWDTP
Sbjct: 181 VKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTP 240
Query: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEEL 300
IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEEL
Sbjct: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEEL 300
Query: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 360
IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG EGYRNVMENC EN +VL+EGLEK
Sbjct: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEK 360
Query: 361 TGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVV 420
T RFNIVSKDEGVPLVAFSLKD+ H EFE++++LRR+GWIVPAYTMP +AQHITVLRVV
Sbjct: 361 TERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVV 420
Query: 421 IREDFSRTLAERLVLDITKVLHELDSLPSKVLVPASEQNGRNG----------KKTEIET 470
IREDFSRTLAERLV+DI KV+ ELD LPS+V+ S ++ KK++I+
Sbjct: 421 IREDFSRTLAERLVIDIEKVMRELDELPSRVIHKISLGQEKSESNSDNLMVTVKKSDIDK 480
Query: 471 QREVTTYWRKFVSERKANNKNKIC 494
QR++ T W+KFV++RK + IC
Sbjct: 481 QRDIITGWKKFVADRK--KTSGIC 502
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
autoinhibition, substituted aldamine, lyase; HET: PLP;
1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Length = 452
Score = 563 bits (1453), Expect = 0.0
Identities = 198/439 (45%), Positives = 278/439 (63%), Gaps = 6/439 (1%)
Query: 16 STFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKL 75
S F ++ + P + + + A+QIINDEL LDGN R NLA+F TW + KL
Sbjct: 2 SRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKL 61
Query: 76 MMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGL 135
M +INKN++D +EYP + + RCVN++A L++AP + AVG T+GSSEA ML G+
Sbjct: 62 MDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGM 121
Query: 136 AFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKA 195
A K +W+ + +A GKP DKPN+V G VQ+CW KFARY++VEL+E+ + G MDP +
Sbjct: 122 AMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRM 180
Query: 196 VEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFL 255
+E DENTI V G T G +E + L+D L + +TG D +H+DAASGGF+APF+
Sbjct: 181 IEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFV 240
Query: 256 YPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFT 315
P++ WDFRLP VKSI+ SGHK+GL G GWVIWR++E LP+EL+F+++YLG TF
Sbjct: 241 APDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFA 300
Query: 316 LNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSK---DEG 372
+NFS+ + QVIAQYY+ +RLG EGY V ++ A L + + K G + + DEG
Sbjct: 301 INFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEG 360
Query: 373 VPLVAFSLKD--NKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLA 430
+P V F LKD + + ++++E LR GW VPA+T+ +A I V+R++ R F A
Sbjct: 361 IPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFA 420
Query: 431 ERLVLDITKVLHELDSLPS 449
E L+ D L L P
Sbjct: 421 ELLLEDYKASLKYLSDHPK 439
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 479 bits (1236), Expect = e-168
Identities = 92/422 (21%), Positives = 164/422 (38%), Gaps = 37/422 (8%)
Query: 31 TMPENSIPKEAAYQIINDELMLDGNPR-LNLASFVTTWMEPECDKLMMAAINKNYVDMDE 89
M E + ++ + + LD N+ + + + P K++ + N D
Sbjct: 4 NMQEKGVSEKEILEELKKYRSLDLKYEDGNIFGSMCSNVLPITRKIVDIFLETNLGDPGL 63
Query: 90 YPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEG 149
+ T L+ + V ++ L N A G G +EA ++A K W+ KR+
Sbjct: 64 FKGTKLLEEKAVALLGSLLNNK-----DAYGHIVSGGTEANLMALRCIKNIWREKRRKGL 118
Query: 150 KPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTI-CVAA 208
+ P I+ +EK ++E + E Y +D + V++ + +
Sbjct: 119 SKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKED-YTIDEKFVKDAVEDYDVDGIIG 177
Query: 209 ILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYP-------ELEW 261
I G+T G ++++ L+ + E N IHVDAA GG + PFL ++
Sbjct: 178 IAGTTELGTIDNIEELSKIAKENN------IYIHVDAAFGGLVIPFLDDKYKKKGVNYKF 231
Query: 262 DFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKG 321
DF L V SI + HK G G +++++ L YL + T+ ++
Sbjct: 232 DFSLG-VDSITIDPHKMGHCPIPSGGILFKDIG-YKRYLDVDAPYLTETRQA-TILGTRV 288
Query: 322 SSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLK 381
Y L LG EG R ++ C EN + L + L++ F V + + +VA +
Sbjct: 289 GFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENN-FKPVIEPI-LNIVAIEDE 346
Query: 382 DNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVL 441
D EV + LR G V LR+V+ R + + + +
Sbjct: 347 -----DYKEVCKKLRDRGIYVSVCNCVK------ALRIVVMPHIKREHIDNFIEILNSIK 395
Query: 442 HE 443
+
Sbjct: 396 RD 397
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 459 bits (1183), Expect = e-159
Identities = 94/452 (20%), Positives = 160/452 (35%), Gaps = 35/452 (7%)
Query: 8 SESDESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTW 67
+ I LPR +P I E A + AS
Sbjct: 52 ASLRSQIKPYRDRFPSHARLPRAGLPRAEILAEIAAMGAAESPAWRDG----YASGAVYH 107
Query: 68 MEPECDKLM----MAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGT 123
+ + N + D +P T + + V + A + T G T
Sbjct: 108 GDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGD-AAGGTVCGTVT 166
Query: 124 VGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKL 183
G +E+++LA ++ K P V + ++K A+YF ++L L
Sbjct: 167 SGGTESLLLAMKTYRDWA-----RATKGITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPL 221
Query: 184 SEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHV 243
+ Y D E + NT+ VA +G + + + L AE HV
Sbjct: 222 -DADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG------IGCHV 274
Query: 244 DAASGGFIAPFL----YPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEE 299
DA GGFI P+ YP +DFRL V S++ HKYG G +++R + L +
Sbjct: 275 DACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQ 334
Query: 300 LIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLE 359
++ G + T S+ + + ++ LG EGY + + A LK G+
Sbjct: 335 YFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVR 394
Query: 360 KTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRV 419
I+ G PL ++ + ++V E + GW + P LR
Sbjct: 395 AIPSLKIL----GDPLWVIAVAS-DELNIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRH 449
Query: 420 VIREDFSRTLAERLVLDITKVLHELDSLPSKV 451
+ +R + D+ + ++ + P K
Sbjct: 450 T-----EPGVVDRFLADLQDAVAQVRAHPEKA 476
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 450 bits (1158), Expect = e-155
Identities = 98/459 (21%), Positives = 196/459 (42%), Gaps = 40/459 (8%)
Query: 3 LSKTFSESDESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIIND--ELMLDGNPRLNL 60
++K ++ + R + +P N IP++ + +N +L+ +
Sbjct: 14 VTKVKQSIEDELI-----RSDSQLMNFPQLPSNGIPQDDVIEELNKLNDLIPHTQWKEGK 68
Query: 61 ASFVTTWMEPECDKLMMAAINK----NYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSE 116
S + L A K N + D +P ++++ V+++ R+FNAP S+
Sbjct: 69 VSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAP---SD 125
Query: 117 TAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEV 176
T G T G +E+++LA L+ K + R +P I+ ++K A YF +
Sbjct: 126 TGCGTTTSGGTESLLLACLSAKMYALHHRGI-----TEPEIIAPVTAHAGFDKAAYYFGM 180
Query: 177 ELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETG 236
+L+ V+L Y +D K + +++NT+ + + +G +D++ L + +
Sbjct: 181 KLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQK------ 234
Query: 237 WDTPIHVDAASGGFIAPFLYPEL-----EWDFRLPLVKSINVSGHKYGLVYAGIGWVIWR 291
+ P+HVD+ G FI F+ DFR+P V SI+ HKYG G +++R
Sbjct: 235 YKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYR 294
Query: 292 NKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENA 351
N + + + + G + TL S+ + V+ + ++ +G GY + A
Sbjct: 295 NSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAA 354
Query: 352 MVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADA 411
M K+ +++ + + +++FS K + E+++ L + GW A P A
Sbjct: 355 MKFKKYIQENIPDLDIMGNPRYSVISFSSKT---LNIHELSDRLSKKGWHFNALQKPV-A 410
Query: 412 QHITVLRVVIREDFSRTLAERLVLDITKVLHELDSLPSK 450
H+ R+ S + + + + + EL S +
Sbjct: 411 LHMAFTRL------SAHVVDEICDILRTTVQELKSESNS 443
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 95.9 bits (238), Expect = 2e-21
Identities = 52/462 (11%), Positives = 128/462 (27%), Gaps = 63/462 (13%)
Query: 3 LSKTFSESDESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRL-NLA 61
+ K + +P + + I + + D + R+
Sbjct: 34 MEKRGELVLNEYLKEIEDVFNHRKIPENGIDDEKIKLFLKFLSMMDTDKDPKSVRIGERE 93
Query: 62 SFVTTWMEPECDKLMMAAINKNYVDMDEYPV---TTELQNRCVNIIARLFNAPLEDSETA 118
+ + + E I ++ +D P + + I+ F +
Sbjct: 94 ARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVH-- 151
Query: 119 VGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVEL 178
+ T S+ + L+ RK ++ K + + +
Sbjct: 152 -AIATPISTGMSISLCLSAARKKYGSNV----------VIYPYASHKSPIKAVSFVGMNM 200
Query: 179 KEV--KLSEGYYVMDPVKAVEMVDE-----NTICVAAILGSTLNGEFEDVKLLNDLLAEK 231
+ V L + + + N CV + L +D+ + +
Sbjct: 201 RLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICEN- 259
Query: 232 NKETGWDTPIHVDAASGGFIAPFL-YPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIW 290
+D P ++ A +L + + +R+ ++ S K L G G V
Sbjct: 260 -----YDIPHIINGAYAIQNNYYLEKLKKAFKYRVD---AVVSSSDKNLLTPIGGGLVYS 311
Query: 291 RNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHEN 350
+ E + + P ++ V+ L+ +G + Y +++N +
Sbjct: 312 TDAEFI--------KEISLSYPG-----RASATPVVNTLVSLLSMGSKNYLELVKNQKNS 358
Query: 351 AMVLKEGLEKTGRFN----IVSKDEGVPLVAFSLKDNKRHDE-FEVAELLRRFGWIVPAY 405
+L E L + + + ++ + + + + + R +
Sbjct: 359 KKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHF 418
Query: 406 TMPADAQHITVLRVVI------REDFSRTLAERLVLDITKVL 441
+ V+ ED V + K+L
Sbjct: 419 GNCYLGTYTHDYIVMNAAIGVRTEDI-----VNSVSKLEKIL 455
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 92.1 bits (229), Expect = 4e-20
Identities = 83/466 (17%), Positives = 159/466 (34%), Gaps = 63/466 (13%)
Query: 22 YVRNSLPRFTMPENSIPKEAAYQIINDELMLD----GNPRLNLASFVTTWMEPE-CDKLM 76
Y+R LP PE+ ++ + I +M +P A + P ++
Sbjct: 42 YLRAQLPES-APEDPDSWDSIFGDIERIIMPGVVHWQSPH-MHAYYPALTSWPSLLGDML 99
Query: 77 MAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAP-----LEDSETAVGVGTVGSSEAIM 131
AIN P TEL+ ++ +A++ P S GV SE+ +
Sbjct: 100 ADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTL 159
Query: 132 LAGLAFKRKWQNKRKAEGKPFDKPN------IVTGANVQVCWEKFARYFEVELKEVKLSE 185
+A LA ++ + K D+ + EK V++K + + +
Sbjct: 160 IALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDD 219
Query: 186 GYYVMDPVKAVEMVDENT------ICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDT 239
+ + + ++E+ + V A LG+T F+ + L + A + W
Sbjct: 220 NF-SLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGL---W-- 273
Query: 240 PIHVDAASGGFIAPFLYPELEWDFR-LPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPE 298
+H+DAA G FL PE + + S + K+ +V+ ++K L +
Sbjct: 274 -LHIDAAYAG--TAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQ 330
Query: 299 ELIFHINYLGADQPTFTLNFSKGSSQ------------VIAQYYQLIRLGFEGYRNVMEN 346
+ YL +F VI + G + + + +
Sbjct: 331 TFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSF------GVKNLQAHVRH 384
Query: 347 CHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYT 406
E A + + F I +K + LV F LK E + E+ + G +
Sbjct: 385 GTEMAKYFESLVRNDPSFEIPAKRH-LGLVVFRLKGPNSLTENVLKEIAKA-GRLFLIPA 442
Query: 407 MPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDSLPSKVL 452
D ++R + S+ DI + + + + +L
Sbjct: 443 TIQD---KLIIRFTV---TSQFTTRD---DILRDWNLIRDAATLIL 479
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 87.1 bits (216), Expect = 2e-18
Identities = 87/476 (18%), Positives = 159/476 (33%), Gaps = 82/476 (17%)
Query: 22 YVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPEC--------- 72
Y+R +P T P+ E Q + +M VT W P
Sbjct: 37 YLRPLIP-ATAPQEPDTFEDILQDVEKIIM----------PGVTHWHSPYFFAYFPTASS 85
Query: 73 -----DKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAP----LEDSETAVGVGT 123
++ AI P TEL+ ++ + ++ P ++ GV
Sbjct: 86 YPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQ 145
Query: 124 VGSSEAIMLAGLAFKRKWQNKRKA------EGKPFDKPNIVTGANVQVCWEKFARYFEVE 177
+SEA ++A LA + K + +A +G +K E+ V+
Sbjct: 146 GSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVK 205
Query: 178 LKEVKLSEGYYVMDPVKAVEMVDENT------ICVAAILGSTLNGEFEDVKLLNDLLAEK 231
LK + S+G + M E ++ + V A LG+T F+++ + + E+
Sbjct: 206 LKAIP-SDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEE 264
Query: 232 NKETGWDTPIHVDAASGGFIAPFLYPELEWDFR-LPLVKSINVSGHKYGLVYAGIGWVIW 290
+ W +HVDAA G + F+ PE + S N + HK+ LV +
Sbjct: 265 D---IW---LHVDAAYAG--SAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWV 316
Query: 291 RNKEDLPEELIFHINYL--GADQPTFTLNFSKGSSQ------------VIAQYYQLIRLG 336
+ + DL YL ++ V Y G
Sbjct: 317 KRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMY------G 370
Query: 337 FEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLR 396
+G + + + + + + + RF + ++ + LV F LK + +E + +
Sbjct: 371 VKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVT-LGLVCFRLKGSDGLNEALLERINS 429
Query: 397 RFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDSLPSKVL 452
I VLR I SR + + + L +++L
Sbjct: 430 A-RKIHLVPCRLRG---QFVLRFAI---CSRKVESG---HVRLAWEHIRGLAAELL 475
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 85.2 bits (211), Expect = 7e-18
Identities = 83/465 (17%), Positives = 151/465 (32%), Gaps = 63/465 (13%)
Query: 22 YVRNSLPRFTMPENSIPKEAAYQIINDELMLD----GNPRLNLASFVTTWMEPE-CDKLM 76
Y++ +P PE + Q I +M +P+ A F T P ++
Sbjct: 37 YLKPLIPDA-APEKPEKWQDVMQDIERVIMPGVTHWHSPK-FHAYFPTANSYPAIVADML 94
Query: 77 MAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLE----DSETAVGVGTVGSSEAIML 132
AI P TEL+ ++ + ++ P E GV +SE+ ++
Sbjct: 95 SGAIACIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLV 154
Query: 133 AGLA------FKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEG 186
A L + K + E K E+ V+L+ V+
Sbjct: 155 ALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSEN- 213
Query: 187 YYVMDPVKAVEMVDENT------ICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTP 240
+ M + ++++ LG+T + F+ + + NK W
Sbjct: 214 -HRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVG---NKHNLW--- 266
Query: 241 IHVDAASGGFIAPFLYPELEWDFR-LPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEE 299
IHVDAA G + F+ PE + + S N + HK+ LV + ++ +
Sbjct: 267 IHVDAAYAG--SAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNA 324
Query: 300 LIFHINYLGADQPTFTLNFSKGSSQ------------VIAQYYQLIRLGFEGYRNVMENC 347
YL D ++ V+ Y G E + +
Sbjct: 325 FNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLY------GVENLQAHIRRH 378
Query: 348 HENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTM 407
A + RF + ++ + LV F LK + +E + + + G I
Sbjct: 379 CNFAKQFGDLCVADSRFELAAEIN-MGLVCFRLKGSNERNE-ALLKRINGRGHIHLVPAK 436
Query: 408 PADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDSLPSKVL 452
D + LR+ I SR D+ E+ + ++
Sbjct: 437 IKD---VYFLRMAI---CSRFTQSE---DMEYSWKEVSAAADEME 472
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 82.8 bits (205), Expect = 4e-17
Identities = 70/476 (14%), Positives = 158/476 (33%), Gaps = 90/476 (18%)
Query: 9 ESDESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWM 68
E + +S + + +++ + + P ++ + + +
Sbjct: 50 EQVNAPYSGMDPKALEDAINAVDLDNKNAPLKSVIDDVAELVA----------KNAIFTQ 99
Query: 69 EPEC---------------DKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLE 113
P+C + M+AA+N++ D+ T ++ + VN + ++
Sbjct: 100 HPDCIAHLHTPPLMPAVAAE-AMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLS-- 156
Query: 114 DSETAVGVGTVGSSEAIMLAGLA-----FKRKWQNKRKAEGKPFDKPN--IVTGANVQVC 166
E A G+ T G +++ + + + + + G P IV
Sbjct: 157 --EKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFT 214
Query: 167 WEKFARYF---EVELKEVKLSEGYYVMDPVKAVEMVDENT------ICVAAILGSTLNGE 217
+K A + E + V + MD K E++ + + G+T +G
Sbjct: 215 VQKSASWMGLGEKAVMTVD-ANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGA 273
Query: 218 FEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFR-LPLVKSINVSGH 276
+D+ + D+ + + W +HVD A GG + + + + SI+V H
Sbjct: 274 IDDLDFIADMAVKHDM---W---MHVDGAYGG---ALILSSHKSRLKGVERAHSISVDFH 324
Query: 277 KYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQ------------ 324
K G ++ +K + + L+ H +YL + N S
Sbjct: 325 KLFYQTISCGALLVNDKSNF-KFLLHHADYLNREHDELP-NLVDKSIATTKRFDALKVFM 382
Query: 325 VIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLK-DN 383
+ G + ++ ++ + + + + +F ++++ + V F +
Sbjct: 383 TMQNV------GPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPS-LSTVLFRATHET 435
Query: 384 KRHDEF--EVAELLRRFGWIVPAYTMPADAQHITVLRVVI------REDFSRTLAE 431
DE + G V T+ T L+ I DF L++
Sbjct: 436 ADLDELNKALRLEALTRGIAVLGETI---VDGKTALKFTILNPCLTTSDFESLLSK 488
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 76.2 bits (188), Expect = 5e-15
Identities = 75/479 (15%), Positives = 148/479 (30%), Gaps = 73/479 (15%)
Query: 5 KTFSESDESIHSTFASRYVRNSLPRF--TMPENSIPKEAAYQIINDELMLD---GNPR-- 57
+ + + + + F + ++ E D L G+PR
Sbjct: 37 RKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDCRDTLKYGVRTGHPRFF 96
Query: 58 ------LNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAP 111
L++ W+ + N N + PV ++ + + +
Sbjct: 97 NQLSTGLDIIGLAGEWL--------TSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWS 148
Query: 112 LEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKP-FDKPNIVTGANVQVCWEKF 170
S+ G+ + G + + M + +A + K+ + K +G K + T +K
Sbjct: 149 ---SKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKA 205
Query: 171 ARYFEVELKEVKL--SEGYYVMDPVKAVEMVDENT------ICVAAILGSTLNGEFEDVK 222
V L + P + E V A G+T+ G F+ ++
Sbjct: 206 GAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQ 265
Query: 223 LLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFR-LPLVKSINVSGHKYGLV 281
+ D+ + N W +HVDAA GG + + + S+ + HK V
Sbjct: 266 EIADICEKYNL---W---LHVDAAWGG--GLLMSRKHRHKLNGIERANSVTWNPHKMMGV 317
Query: 282 YAGIGWVIWRNKEDLPEELIFHINYL--GADQPTFTLNFSKGSSQ------VIAQYYQLI 333
++ + K L YL Q + + + Q + +
Sbjct: 318 LLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWK 377
Query: 334 RLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDE-------------GVPLVAFSL 380
G G+ N + C E A L ++ F +V E + V S
Sbjct: 378 AKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSP 437
Query: 381 KDNKRHDEF--EVAELLRRFGWIVPAYTMPADAQHITVLRVVI------REDFSRTLAE 431
+ ++ + ++ L+ G + Y D R+VI + D + E
Sbjct: 438 QRREKLHKVAPKIKALMMESGTTMVGYQPQGD--KANFFRMVISNPAATQSDIDFLIEE 494
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 74.3 bits (183), Expect = 2e-14
Identities = 70/465 (15%), Positives = 141/465 (30%), Gaps = 85/465 (18%)
Query: 22 YVRNSLPRFTMPENSIPKEAAYQIINDELMLD---GNPR--------LNLASFVTTWMEP 70
++ L + ++ + + G+PR L+ + +
Sbjct: 73 ELKQLLD-LELRSQGESQKQILERCRAVIRYSVKTGHPRFFNQLFSGLDPHALAGRII-- 129
Query: 71 ECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAI 130
++N + + PV ++ + + L + G+ G S +
Sbjct: 130 ------TESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWS-----SGDGIFCPGGSISN 178
Query: 131 MLAGLAFKRKWQNKRKAEG-KPFDKPNIVTGANVQVCWEKFARYFEVELKEVKL--SEGY 187
M A + + K G + + T +K A + + V++ ++
Sbjct: 179 MYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADER 238
Query: 188 YVMDPVKAVEMVDENT------ICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPI 241
M P + V+A G+T+ G F+ ++ + D+ W +
Sbjct: 239 GKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGL---W---L 292
Query: 242 HVDAASGGFIAPFLYPELEWDFR-LPLVKSINVSGHKYGLVYAGIGWVIWRNKED-LPEE 299
HVDAA GG + L + S+ + HK ++ ++ + L
Sbjct: 293 HVDAAWGG--SVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRC 350
Query: 300 LIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIR-------------LGFEGYRNVMEN 346
+YL + + G V Q R G +G ++
Sbjct: 351 HGSQASYLFQQDKFYDVALDTGDKVV-----QCGRRVDCLKLWLMWKAQGDQGLERRIDQ 405
Query: 347 CHENAMVLKEGLEKTGRFNIVSKDEGVPLVAF------------SLKDNKRHDEF--EVA 392
A L E ++K F +V + E V F S ++R + +
Sbjct: 406 AFVLARYLVEEMKKREGFELVMEPE-FVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLK 464
Query: 393 ELLRRFGWIVPAYTMPADAQHITVLRVVI------REDFSRTLAE 431
E + + G ++ Y RVV+ D L E
Sbjct: 465 ERMVKEGSMMIGYQPHGT--RGNFFRVVVANSALTCADMDFLLNE 507
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.9 bits (126), Expect = 2e-07
Identities = 52/444 (11%), Positives = 112/444 (25%), Gaps = 114/444 (25%)
Query: 7 FSESDESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTT 66
+ + S + + + + + ++ +L + + FV
Sbjct: 35 CKDVQDMPKSILSKEEIDHII---MSKD---AVSGTLRLF--WTLLSKQEEM-VQKFVEE 85
Query: 67 WMEPECDKLMMAAINKNYVD----MDEYPVTTELQNRCVN--------------IIARLF 108
+ LM + I Y E ++R N +L
Sbjct: 86 VLRINYKFLM-SPIKTEQRQPSMMTRMY---IEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 109 NAPLE-DSETAVGV-GTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVC 166
A LE V + G +GS + +A + + F ++
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTW-VALDVC----LSYKVQCKMDF-----------KIF 185
Query: 167 WEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKL-LN 225
W E L + Y +DP + S + ++ L
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDP----------NWTSRSDHSSNIKLRIHSIQAELR 235
Query: 226 DLLAEKNKETG-------WDTPIHVDAASGGF--------------IAPFLYPELEWDFR 264
LL K E + +A F + FL
Sbjct: 236 RLLKSKPYENCLLVLLNVQN-AKAWNA----FNLSCKILLTTRFKQVTDFLSAATT--TH 288
Query: 265 LPLVKSINVSGHKYGL-VYAGIGWVIWRNKEDLPEELI----FHINYLGADQPTFTLNFS 319
+ L + + +DLP E++ ++ + +
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLK---YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW- 344
Query: 320 KGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKT--GRFNIVSKDEGVPLVA 377
++ + + ++E+ L+ + R ++ +P +
Sbjct: 345 --------DNWK--HVNCDKLTTIIESSLNV---LEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 378 FSL--KDNKRHDEFEVAELLRRFG 399
SL D + D V L ++
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYS 415
Score = 50.2 bits (119), Expect = 1e-06
Identities = 58/420 (13%), Positives = 137/420 (32%), Gaps = 109/420 (25%)
Query: 8 SESDESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDG--NPRLNLASF-- 63
S SD S + ++ L R K Y+ N L+L N + +F
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLL-------KSKPYE--NCLLVLLNVQNAKA-WNAFNL 264
Query: 64 -----VTTWMEPECDKLMMAAINKNYVDMDEYPVT-TELQNRCVNIIARLFNAPLED-SE 116
+TT + D L +A ++ +D + +T T + + +++ + + +D
Sbjct: 265 SCKILLTTRFKQVTDFL--SAATTTHISLDHHSMTLTPDEVK--SLLLKYLDCRPQDLPR 320
Query: 117 TAVGVGTVGSSEAIMLAGLAFKR---KWQNKRKAEGKPFDKP-----NIVTGANVQVCWE 168
+ + + + + + W N + N++ A + ++
Sbjct: 321 EVLT----TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 169 KFARYFEVELKEVKLSEGYYVM---DPVKAVEMVDENTICVAAIL-----GST------- 213
+ + F + + D +K+ MV N + +++ ST
Sbjct: 377 RLS-VFP---PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 214 --LNGEFEDVKLLNDLLAEK-NKETGWD----TPIHVDAASGGFIAPFL----------- 255
L + E+ L+ + + N +D P ++D + +
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD----QYFYSHIGHHLKNIEHPE 488
Query: 256 ----YPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQ 311
+ + DFR K + + W + + ++L F+ Y+ +
Sbjct: 489 RMTLFRMVFLDFRFLEQK----------IRHDSTAWNASGSILNTLQQLKFYKPYICDND 538
Query: 312 PTFT------LNFSKGSSQ--VIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGR 363
P + L+F + + ++Y L+R+ E+ + +E ++ R
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLRIALM---------AEDEAIFEEAHKQVQR 589
Score = 35.2 bits (80), Expect = 0.052
Identities = 33/203 (16%), Positives = 73/203 (35%), Gaps = 43/203 (21%)
Query: 316 LNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIV---SKDEG 372
++F G Q QY ++ + + + + + C + + K L K +I+ G
Sbjct: 7 MDFETGEHQY--QYKDILSVFEDAFVDNFD-CKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 373 VPLVAFSLKDNKRH--DEFEVAELLRR-FGWIVPAY-TMPADAQHITVL----------- 417
+ ++L + +F V E+LR + +++ T +T +
Sbjct: 64 TLRLFWTLLSKQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 418 -RVVIREDFSRTLAERLVLDITKVLHELDSLPSKVLVPASEQNGRNGK-KT--------- 466
+V + + SR + L + + L EL VL+ +G G KT
Sbjct: 123 NQVFAKYNVSR---LQPYLKLRQALLELRPAK-NVLI-----DGVLGSGKTWVALDVCLS 173
Query: 467 -EIETQREVTTYWRKFVSERKAN 488
+++ + + +W +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPE 196
Score = 29.1 bits (64), Expect = 4.4
Identities = 20/136 (14%), Positives = 40/136 (29%), Gaps = 44/136 (32%)
Query: 386 HDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITK-VL--H 442
H +FE E ++ I+ V + F + V D+ K +L
Sbjct: 6 HMDFETGEHQYQYKDILS----------------VFEDAFVDNFDCKDVQDMPKSILSKE 49
Query: 443 ELDSL---PSKV-----LVPASEQNGRNGKKTEIETQREVTTYW---------------- 478
E+D + V L + +E + +
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 479 RKFVSER-KANNKNKI 493
R ++ +R + N N++
Sbjct: 110 RMYIEQRDRLYNDNQV 125
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine,
sepsecs, protein-RNA complex, alternative splicing,
cytoplasm, protein biosynthesis, pyridoxal phosphate,
selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Length = 501
Score = 47.0 bits (111), Expect = 1e-05
Identities = 49/310 (15%), Positives = 99/310 (31%), Gaps = 49/310 (15%)
Query: 103 IIARLFNAPLED--------SETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDK 154
++ ++ N+ + D + V + + ++ L L + K +
Sbjct: 113 LLNKITNSLVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKY-------- 164
Query: 155 PNIVTGANVQVCWEKFARY--FEVELKEVKLSEGYYVMDPVKAVEMVDE----NTICVAA 208
I+ Q K FE + E L D V E +C+ +
Sbjct: 165 --IIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHS 222
Query: 209 ILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLV 268
+ ++ L + A +D P V+ A G + ++ ++ R+ +
Sbjct: 223 TTSCFAPRVPDRLEELAVICAN------YDIPHIVNNAYGVQSSKCMH-LIQQGARVGRI 275
Query: 269 KSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQ 328
+ S K +V G + N + E Y G +S +
Sbjct: 276 DAFVQSLDKNFMVPVGGAIIAGFNDSFIQE---ISKMYPG----------RASASPSLDV 322
Query: 329 YYQLIRLGFEGYRNVMENCHENAMVLKEGLEK----TGRFNIVSKDEGVPLVAFSLKDNK 384
L+ LG GY+ +++ E L ++K + + + L A +LK
Sbjct: 323 LITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISL-AMTLKTLD 381
Query: 385 RHDEFEVAEL 394
H + V +L
Sbjct: 382 EHRDKAVTQL 391
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 8e-05
Identities = 26/163 (15%), Positives = 51/163 (31%), Gaps = 47/163 (28%)
Query: 289 IW-RNKEDLPEELIFHINYLGADQPT-FTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMEN 346
+W R + F I + + P T++F + I + Y + + +++
Sbjct: 1645 VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI-----FETIVDG 1699
Query: 347 CHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYT 406
+ + KE +E F R ++ LL +T
Sbjct: 1700 KLKTEKIFKE------------INEHSTSYTF------RSEK----GLLSA-----TQFT 1732
Query: 407 MPADAQHITVLRVVIREDFSRTLAERLVLDITKVL--HELDSL 447
PA +T++ ED L + ++ H SL
Sbjct: 1733 QPA----LTLMEKAAFED----LKSKGLIPADATFAGH---SL 1764
Score = 44.7 bits (105), Expect = 8e-05
Identities = 38/189 (20%), Positives = 61/189 (32%), Gaps = 60/189 (31%)
Query: 311 QPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKD 370
+P TL S GS + V A L+E +F +K
Sbjct: 7 RP-LTL--SHGS----------LEHVLL----VPTASFFIASQLQE------QF---NKI 40
Query: 371 EGVPLVAFSLKDNKRHDEFE-VAELLRRF-GWIVPAYTMPADAQHITVLRVVIREDFSRT 428
P F+ DE AEL+ +F G++ Q VL + + E F
Sbjct: 41 LPEPTEGFAA-----DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE-F--- 91
Query: 429 LAERLVL---DITKVLHEL-DSLPSKVLVPASEQNGRNGKKTEIETQREVTTYWR-KFVS 483
E L DI H L L + T ++T+ + Y + ++
Sbjct: 92 --ENCYLEGNDI----HALAAKLLQEN------------DTTLVKTKELIKNYITARIMA 133
Query: 484 ERKANNKNK 492
+R + K+
Sbjct: 134 KRPFDKKSN 142
Score = 35.8 bits (82), Expect = 0.036
Identities = 42/271 (15%), Positives = 86/271 (31%), Gaps = 65/271 (23%)
Query: 201 ENTICVAA---ILGSTLNGEFEDVKLLN---DLLAEKNKETGWDTPIHVDAASGGFIAPF 254
E+ + V + S L +F K+L + A ++ T TP + G+++
Sbjct: 17 EHVLLVPTASFFIASQLQEQF--NKILPEPTEGFAADDEPT---TPAELVGKFLGYVSSL 71
Query: 255 LYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYL-GADQPT 313
+ P F ++ L E F YL G D
Sbjct: 72 VEPSKVGQFD-QVLNLC------------------------LTE---FENCYLEGNDIHA 103
Query: 314 FTLNFSKGSSQVIAQYYQLIRLGFEGYRNV---MENCHENAMVLKEGLEKTGRFNIVSK- 369
+ + + + +LI+ + +A L + G +V+
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA--LFRAVG-EGNAQLVAIF 160
Query: 370 -DEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRT 428
+G F E+ +L + + +V + A+ ++ L + D +
Sbjct: 161 GGQGNTDDYFE----------ELRDLYQTYHVLVGDLIKFS-AETLSEL-IRTTLDAEKV 208
Query: 429 LAERLVLDITKVLHELDSLPSK---VLVPAS 456
+ L+I + L + P K + +P S
Sbjct: 209 FTQ--GLNILEWLENPSNTPDKDYLLSIPIS 237
Score = 32.3 bits (73), Expect = 0.49
Identities = 51/329 (15%), Positives = 93/329 (28%), Gaps = 135/329 (41%)
Query: 8 SESDESIHSTFASRYVRNSL----------PRFTMPENSIPKEAAYQIINDE----LML- 52
++S ES + + + P ++P P + N+E ML
Sbjct: 286 TDSWESFFVS-VRKAITVLFFIGVRCYEAYPNTSLP----PSILEDSLENNEGVPSPMLS 340
Query: 53 -DGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAP 111
+ + +V N P + V I L N
Sbjct: 341 ISNLTQEQVQDYV-------------NKTNS------HLP-----AGKQVEI--SLVNGA 374
Query: 112 LEDSETAVGVGTVGSSEAIMLAGLAFK-RKWQNKRKAEGK------PFD--KPNIVTGAN 162
+ V V G ++ L GL RK KA PF K
Sbjct: 375 ----KNLV-VS--GPPQS--LYGLNLTLRK----AKAPSGLDQSRIPFSERKLKFSN--- 418
Query: 163 VQVCWEKF----ARYFEVELKEVKLSEGYYVMDPVKAVEMVDE-----NTICVAAILG-- 211
+F + + S + P A +++++ N A +
Sbjct: 419 ------RFLPVASPFH---------SH--L-LVP--ASDLINKDLVKNNVSFNAKDIQIP 458
Query: 212 --STLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVK 269
T +G D+++L+ + + VD P ++W+
Sbjct: 459 VYDTFDGS--DLRVLSGSI----------SERIVDCI---IRLP-----VKWE------T 492
Query: 270 SINVSG-H--KYG-LVYAGIGWVIWRNKE 294
+ H +G +G+G + RNK+
Sbjct: 493 TTQFKATHILDFGPGGASGLGVLTHRNKD 521
Score = 28.5 bits (63), Expect = 7.6
Identities = 28/179 (15%), Positives = 50/179 (27%), Gaps = 61/179 (34%)
Query: 5 KTFSESDESIHSTF---ASRYVRNSLPRFTM---PENSIPKEAAYQIINDELMLDGNPR- 57
++ +D T+ V N+ T+ E Y + E ++DG +
Sbjct: 1644 DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKT 1703
Query: 58 ------LNLASFVTTWMEPECDKL---------MMA---AI-----NKNYVDMD------ 88
+N S T+ + L + A +K + D
Sbjct: 1704 EKIFKEINEHSTSYTFRSEK-GLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGH 1762
Query: 89 ---EYPVTTELQNRCVNIIARLFNAPLED-----------SETAVGVGTVGSSEAIMLA 133
EY L + A + +E + AV +G S M+A
Sbjct: 1763 SLGEY---AALA--SL---ADVM--SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA 1811
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr
protein phosphatase, ppase, manganese, sulfate, viral
protein; 2.15A {Enterobacteria phage lambda} SCOP:
d.159.1.3
Length = 221
Score = 33.6 bits (77), Expect = 0.086
Identities = 11/85 (12%), Positives = 27/85 (31%), Gaps = 10/85 (11%)
Query: 220 DVKLLNDLLAEKNKETGW-----DTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVS 274
+ ++ D L+E+ W ++D LPL+ +
Sbjct: 77 EQMMI-DGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALA----HKADELPLIIELVSK 131
Query: 275 GHKYGLVYAGIGWVIWRNKEDLPEE 299
KY + +A + + + + +
Sbjct: 132 DKKYVICHADYPFDEYEFGKPVDHQ 156
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex,
calmodulin, dimer, binding protein/hydrolase comple; NMR
{Petunia x hybrida}
Length = 28
Score = 29.8 bits (66), Expect = 0.13
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 464 KKTEIETQREVTTYWRKFVSERK 486
KKT+ E Q E+ T W+KFV E+K
Sbjct: 4 KKTDSEVQLEMITAWKKFVEEKK 26
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6,
pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A
{Pseudomonas fluorescens} SCOP: c.67.1.3
Length = 416
Score = 32.4 bits (74), Expect = 0.29
Identities = 40/222 (18%), Positives = 66/222 (29%), Gaps = 34/222 (15%)
Query: 95 ELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDK 154
+L R N +A L A D E V T S + A R + ++
Sbjct: 71 DLSERLGNRLATLIGAR--DGEVVVTDTT---SINLFKVLSAALRVQATRSP------ER 119
Query: 155 PNIVTGA----NVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAIL 210
IVT E A + V P + + +D++T V
Sbjct: 120 RVIVTETSNFPTDLYIAEGLADMLQQGYTLRL------VDSPEELPQAIDQDTAVVMLTH 173
Query: 211 GSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKS 270
+ G D++ L L E WD A S G + L+ + D+ +
Sbjct: 174 VNYKTGYMHDMQALTALSHECGALAIWDL-----AHSAGAVPVDLH-QAGADYAI----- 222
Query: 271 INVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQP 312
+KY G +W + + + G +
Sbjct: 223 --GCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQ 262
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2)
tetramer, riken structural genomics/proteomi initiative,
RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP:
c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Length = 438
Score = 31.4 bits (72), Expect = 0.77
Identities = 10/37 (27%), Positives = 12/37 (32%)
Query: 335 LGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDE 371
LG EG R V E A L L + +
Sbjct: 337 LGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKP 373
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase;
structural genomics, joint center for structural
genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium
sibiricum}
Length = 357
Score = 30.7 bits (70), Expect = 0.98
Identities = 10/101 (9%), Positives = 19/101 (18%), Gaps = 6/101 (5%)
Query: 344 MENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVP 403
M +E A L E + + + ++ ++ G
Sbjct: 258 MGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAADISPKLEQVQEETGLGFV 317
Query: 404 AYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHEL 444
Y + D E L
Sbjct: 318 GYLVDKD------GYCSTEISVGDAYGELDQQTRDAGFARL 352
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 30.6 bits (70), Expect = 1.3
Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 18/63 (28%)
Query: 119 VGVGTVGSSEA--IMLAGLA-----FKRKWQNKRKAEGK--------PFDKPNIVTGANV 163
VG G VGSS A ++L G+A K K +G PF P + A
Sbjct: 15 VGDGAVGSSYAYAMVLQGIAQEIGIVDI---FKDKTKGDAIDLSNALPFTSPKKIYSAEY 71
Query: 164 QVC 166
Sbjct: 72 SDA 74
>3oo8_A ABC transporter binding protein ACBH; class 2 SBP fold, ABC
transporter extracellular solute bindi protein,
D-galactose binding; 1.60A {Actinoplanes} PDB: 3oo6_A*
3oo7_A 3oo9_A 3ooa_A
Length = 415
Score = 29.8 bits (67), Expect = 2.0
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 246 ASGGFIAPF--LYPELEWDFRLPLVK-SINVSGHKYGLVYAGIGWVIWRNKE 294
A+ G + P ++ ++ F S + GH Y + WV++ NK
Sbjct: 98 AAQGLLTPIDDVWDKIGGTFNDAAKSLSKGLDGHYYLVPLYNYPWVVFYNKS 149
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 29.4 bits (67), Expect = 2.3
Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 18/63 (28%)
Query: 119 VGVGTVGSSEA--IMLAGLA-----FKRKWQNKRKAEGK--------PFDKPNIVTGANV 163
VG G VGSS A + G+A K + +G F P +
Sbjct: 11 VGDGAVGSSYAFAMAQQGIAEEFVIVDV---VKDRTKGDALDLEDAQAFTAPKKIYSGEY 67
Query: 164 QVC 166
C
Sbjct: 68 SDC 70
>3osq_A Maltose-binding periplasmic protein, green fluore protein;
engineered protein, sensor protein, fluorescent protein,
MBP maltose sensor; HET: C12 MAL; 1.90A {Escherichia
coli}
Length = 661
Score = 29.8 bits (66), Expect = 2.7
Identities = 9/57 (15%), Positives = 16/57 (28%), Gaps = 1/57 (1%)
Query: 244 DAASGGFIAPF-LYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEE 299
A G +A + ++ +G A + NK+ LP
Sbjct: 105 GYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNP 161
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 29.3 bits (66), Expect = 3.0
Identities = 52/322 (16%), Positives = 90/322 (27%), Gaps = 81/322 (25%)
Query: 104 IARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGAN- 162
+ + V T G+ EA + K +V N
Sbjct: 63 LPKFLGCD----VARV---TNGAREAKFAVMHSL-----------AKKDAW--VVMDENC 102
Query: 163 ---VQVCWEKFARYFEVELKEVKLSE-GYYVMDPVKAVEMVDENTICVAAIL-----GST 213
V E+ + + V ++ Y + P + ++E +L
Sbjct: 103 HYSSYVAAER----AGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDG 158
Query: 214 LNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPL-VKSIN 272
G DVK + + + D P+ V+ A R+P+ +K I
Sbjct: 159 NYGNLPDVKKIAK-VCSEY-----DVPLLVNGAYA---IG----------RMPVSLKEIG 199
Query: 273 V-----SGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSK--GSSQV 325
SGHK IG V+ +E + + + G +
Sbjct: 200 ADFIVGSGHKSMAASGPIG-VMGMKEE--------WAEIVLRRSEKYKNKEVELLGCTAR 250
Query: 326 IAQYYQLIRLGFEGYRNVMENC---HENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKD 382
A L+ F R ++ E A +EK G + L+ F +
Sbjct: 251 GATIITLMA-SFPHVRERIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAEV 309
Query: 383 ----NKRHDE---FEVAELLRR 397
+K+ F EL R
Sbjct: 310 LYEISKKAKGGRFFLYRELKSR 331
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 28.6 bits (65), Expect = 4.2
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 18/63 (28%)
Query: 119 VGVGTVGSSEAIMLA--GLA-----FKRKWQNKRKAEGK--------PFDKPNIVTGANV 163
VG+G VGSS A L G A +K++AEG PF + + +
Sbjct: 6 VGLGRVGSSTAFALLMKGFAREMVLIDV---DKKRAEGDALDLIHGTPFTRRANIYAGDY 62
Query: 164 QVC 166
Sbjct: 63 ADL 65
>1kut_A Phosphoribosylaminoimidazole-succinocarboxamide synthase;
structural genomics, saicar synthetase, PSI, protein
structure initiative; 2.20A {Thermotoga maritima} SCOP:
d.143.1.1
Length = 230
Score = 28.3 bits (64), Expect = 4.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 374 PLVAFSLKDNKRHDEFEVAELLRRFGWI 401
PLV F +KD++RHD + L G
Sbjct: 109 PLVEFFIKDDERHDPMVCVDHLEILGIA 136
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding
enzyme, lysine biosynthesis, aminotransferase, S
genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Length = 411
Score = 28.7 bits (65), Expect = 4.8
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 104 IARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAF 137
R F D ET V V TVG++EAI A L
Sbjct: 75 RRRHFGVDY-DPETEVLV-TVGATEAIAAAVLGL 106
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 28.6 bits (65), Expect = 5.2
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 22/65 (33%)
Query: 119 VGVGTVGSSEAIMLA--GLAFKRKWQ-------NKRKAEGK--------PFDKPNIVTGA 161
VG G VGS+ A LA G+A + +++ A+ PF P V
Sbjct: 6 VGSGMVGSATAYALALLGVA-----REVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAG 60
Query: 162 NVQVC 166
+
Sbjct: 61 SYGDL 65
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic
acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP;
HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB:
1yiy_A* 2r5c_A* 2r5e_A*
Length = 429
Score = 28.4 bits (64), Expect = 5.4
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 78 AAINKNYVDMDEYPVTT---ELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAG 134
AA N ++Y L + ++L + + + T V V TVG+ EA+
Sbjct: 61 AAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTI-NPMTEVLV-TVGAYEALYATI 118
Query: 135 LAF 137
Sbjct: 119 QGH 121
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 28.3 bits (64), Expect = 5.4
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 18/59 (30%)
Query: 119 VGVGTVGSSEAIMLA--GLA-----FKRKWQNKRKAEGK--------PFDKPNIVTGAN 162
+G G VGS+ A A G+A K + E + F + G++
Sbjct: 13 IGAGAVGSTLAFAAAQRGIAREIVLEDI---AKERVEAEVLDMQHGSSFYPTVSIDGSD 68
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP
hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A
2e69_A 2e6e_A 2e6g_A 2e6h_A
Length = 244
Score = 28.2 bits (64), Expect = 5.6
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 371 EGVPLVAFSLKDNKRHDEFEVAE 393
G+ AFS+ N +F
Sbjct: 120 FGLSAAAFSVPLNGEVPDFAGLR 142
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 28.2 bits (64), Expect = 5.6
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 18/63 (28%)
Query: 119 VGVGTVGSSEAIMLA--GLA-----FKRKWQNKRKAEGK--------PFDKPNIVTGANV 163
+G G VG+S A +A A K KA G+ PF + +
Sbjct: 13 IGAGFVGASAAFTMALRQTANELVLIDV---FKEKAIGEAMDINHGLPFMGQMSLYAGDY 69
Query: 164 QVC 166
Sbjct: 70 SDV 72
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP;
2.35A {Escherichia coli} SCOP: c.67.1.1
Length = 386
Score = 28.3 bits (64), Expect = 6.0
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 104 IARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAF 137
RL+ D+++ + V T G++EA+ A A
Sbjct: 80 TERLYGYQP-DADSDITV-TAGATEALYAAITAL 111
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: LLP; 1.50A {Homo sapiens}
PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Length = 422
Score = 28.0 bits (63), Expect = 6.7
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 78 AAINKNYVDMDEYPVTT---ELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAG 134
A++ ++ +++Y T L + L + D V V TVG A+ A
Sbjct: 52 HAVSGDF-MLNQYTKTFGYPPLTKILASFFGELLGQEI-DPLRNVLV-TVGGYGALFTAF 108
Query: 135 LAF 137
A
Sbjct: 109 QAL 111
>4d8o_A Ankyrin-2; ZU5, UPA, death domain, supramodule, protein binding;
2.20A {Homo sapiens}
Length = 581
Score = 28.0 bits (61), Expect = 7.4
Identities = 29/222 (13%), Positives = 69/222 (31%), Gaps = 35/222 (15%)
Query: 177 ELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETG 236
K ++ E + + + VE+++ I V + + + ++N+
Sbjct: 367 VDKTLEQQENFAEVARSRDVEVLEGKPIYVDCFGNLVPLTKSGQHHIFSFFAFKENRLPL 426
Query: 237 WDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLV----------YAGIG 286
+ G ++ P+ + ++N++ Y
Sbjct: 427 FVKVRDTTQEPCGRLSFMKEPKSTRGLVHQAICNLNITLPIYTKESESDQEQEEEIDMTS 486
Query: 287 WVIWRNKEDLPEELIFHI-NYLGADQPTF--TLNFSKGSSQVIAQYYQLIRLGFEGYRNV 343
+++++ EE + +I ++LG L+F++ I ++
Sbjct: 487 EKNPQDEQERIEERLAYIADHLGFSWTELARELDFTEEQIHQIRIENP---------NSL 537
Query: 344 MENCHE-----------NAMV--LKEGLEKTGRFNIVSKDEG 372
+ H +A L E L K R +IV E
Sbjct: 538 QDQSHALLKYWLERDGKHATDTNLVECLTKINRMDIVHLMET 579
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: GLN PMP; 2.26A {Mus
musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Length = 410
Score = 28.0 bits (63), Expect = 8.0
Identities = 4/34 (11%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 104 IARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAF 137
+++ + D + V VG+ ++ +
Sbjct: 74 YGKIYQRQI-DPNEEILV-AVGAYGSLFNSIQGL 105
>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein;
solute-binding protein, blood group antigen,
carbohydrate transport; HET: A2G GAL FUC; 2.35A
{Streptococcus pneumoniae}
Length = 430
Score = 27.8 bits (62), Expect = 8.8
Identities = 7/61 (11%), Positives = 15/61 (24%), Gaps = 3/61 (4%)
Query: 237 WDTPIHVDAASGGFIAP---FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNK 293
+ + A + ++ K G Y + +W NK
Sbjct: 106 AGNAVSLAAIEQKLVLDLKPYIDSNKLEKNVGLNYKQNQKDGKIYTVHEQLFTMGLWYNK 165
Query: 294 E 294
+
Sbjct: 166 D 166
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.399
Gapped
Lambda K H
0.267 0.0624 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,717,648
Number of extensions: 480834
Number of successful extensions: 1162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1107
Number of HSP's successfully gapped: 64
Length of query: 494
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 397
Effective length of database: 3,993,456
Effective search space: 1585402032
Effective search space used: 1585402032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.7 bits)