RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 011057
(494 letters)
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 413 bits (1062), Expect = e-142
Identities = 199/446 (44%), Positives = 280/446 (62%), Gaps = 6/446 (1%)
Query: 8 SESDESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTW 67
E + S F ++ + P + + + A+QIINDEL LDGN R NLA+F TW
Sbjct: 6 DLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTW 65
Query: 68 MEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSS 127
+ KLM +INKN++D +EYP + + RCVN++A L++AP + AVG T+GSS
Sbjct: 66 DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSS 125
Query: 128 EAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGY 187
EA ML G+A K +W+ + +A GKP DKPN+V G VQ+CW KFARY++VEL+E+ + G
Sbjct: 126 EACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQ 184
Query: 188 YVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAAS 247
MDP + +E DENTI V G T G +E + L+D L + +TG D +H+DAAS
Sbjct: 185 LFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAAS 244
Query: 248 GGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYL 307
GGF+APF+ P++ WDFRLP VKSI+ SGHK+GL G GWVIWR++E LP+EL+F+++YL
Sbjct: 245 GGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYL 304
Query: 308 GADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIV 367
G TF +NFS+ + QVIAQYY+ +RLG EGY V ++ A L + + K G + +
Sbjct: 305 GGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFI 364
Query: 368 SK---DEGVPLVAFSLKDNKR--HDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIR 422
DEG+P V F LKD + + ++++E LR GW VPA+T+ +A I V+R++ R
Sbjct: 365 CTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCR 424
Query: 423 EDFSRTLAERLVLDITKVLHELDSLP 448
F AE L+ D L L P
Sbjct: 425 RGFEMDFAELLLEDYKASLKYLSDHP 450
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 476
Score = 138 bits (348), Expect = 2e-36
Identities = 82/470 (17%), Positives = 158/470 (33%), Gaps = 57/470 (12%)
Query: 11 DESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEP 70
++ Y+R +P T P+ E Q + +M G + F +
Sbjct: 26 GRQVYPDVQPGYLRPLIP-ATAPQEPDTFEDILQDVEKIIM-PGVTHWHSPYFFA-YFPT 82
Query: 71 ECDKLMMAA------INKNYVDMDEYPVTTELQNRCVNIIARLFNAP----LEDSETAVG 120
M A I P TEL+ ++ + ++ P ++ G
Sbjct: 83 ASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGG 142
Query: 121 VGTVGSSEAIMLAGLAFKRKWQNKRKA------EGKPFDKPNIVTGANVQVCWEKFARYF 174
V +SEA ++A LA + K + +A +G +K E+
Sbjct: 143 VIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIG 202
Query: 175 EVELKEVKLSEGYYVMDPVKAVEMVDENT------ICVAAILGSTLNGEFEDVKLLNDLL 228
V+LK + S+G + M E ++ + V A LG+T F+++ + +
Sbjct: 203 GVKLKAIP-SDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPIC 261
Query: 229 AEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWV 288
E D +HVDAA G + + S N + HK+ LV +
Sbjct: 262 HE------EDIWLHVDAAYAGSAFICPEFRHLLNG-VEFADSFNFNPHKWLLVNFDCSAM 314
Query: 289 IWRNKEDLPEELIFH-----INYLGADQPTFTLNFSKGSSQ---VIAQYYQLIRLGFEGY 340
+ + DL ++ G+ T ++ + + ++ G +G
Sbjct: 315 WVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGL 374
Query: 341 RNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGW 400
+ + + + + + + RF + ++ + LV F LK + +E + E +
Sbjct: 375 QAYIRKHVQLSHEFEAFVLQDPRFEVCAEVT-LGLVCFRLKGSDGLNE-ALLERINSARK 432
Query: 401 IVPAYTMPADAQHITVLRVVI------REDFSRTLAERLVLDITKVLHEL 444
I + +P + VLR I I + EL
Sbjct: 433 I---HLVPCRLRGQFVLRFAICSRKVESGHV-----RLAWEHIRGLAAEL 474
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 107 bits (267), Expect = 9e-26
Identities = 61/471 (12%), Positives = 134/471 (28%), Gaps = 74/471 (15%)
Query: 21 RYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASF------VTTWMEPECDK 74
+R L + PE+ + +++ ++D N L V + +
Sbjct: 8 HLIRLLLEQGKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHY 67
Query: 75 LMMAAINKNYVDMDEYP------VTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSE 128
+ I ++ P + ++ N V + +L A ++
Sbjct: 68 RFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVH----SVASCFVVPMATG 123
Query: 129 AIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVK--LSEG 186
+ R + K K I+ Q K E ++ L
Sbjct: 124 MSLTLCFLTLRHKRPKAK---------YIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGD 174
Query: 187 YYVMDPVKAVE----MVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIH 242
D + E+ +C+ + + ++ L + A +D P
Sbjct: 175 ELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICAN------YDIPHV 228
Query: 243 VDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIF 302
V+ A G + ++ ++ R+ + + S K +V G + N+ +
Sbjct: 229 VNNAYGLQSSKCMHL-IQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFI------ 281
Query: 303 HINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTG 362
+ +S + L+ LG GYR +++ E + L L+K
Sbjct: 282 -------QDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLA 334
Query: 363 RFN---IVSKDEGVPLVAFSLKDNKRHDEFEVAELLRR--------------------FG 399
+ ++ +A +LK H + V +L G
Sbjct: 335 EAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSG 394
Query: 400 WIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDSLPSK 450
+ AD L + + + K L+ + ++
Sbjct: 395 HTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKEQTR 445
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 69.6 bits (169), Expect = 3e-13
Identities = 57/465 (12%), Positives = 124/465 (26%), Gaps = 67/465 (14%)
Query: 3 LSKTFSESDESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLAS 62
+ K + E + + + + + + +PEN I E + M+D +
Sbjct: 10 IPKNMEKRGELVLNEYL-KEIEDVFNHRKIPENGIDDEKIKLFLKFLSMMDTDKDPKSVR 68
Query: 63 --------FVTTWMEPECDKLMMAAINKNYVDMDEY----PVTTELQNRCVNIIARLFNA 110
+ E + N VD + L N+ + +
Sbjct: 69 IGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGL 128
Query: 111 PLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKF 170
+ + +I L A ++K+ ++ K
Sbjct: 129 N-----VHAIATPISTGMSISLCLSAARKKYG-----------SNVVIYPYASHKSPIKA 172
Query: 171 ARYFEVELKEVK--LSEGYYVMDPVKAVEMVDE-----NTICVAAILGSTLNGEFEDVKL 223
+ + ++ V+ L + + + N CV + L +D+
Sbjct: 173 VSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVE 232
Query: 224 LNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYA 283
+ + + P ++ A Y E V ++ S K L
Sbjct: 233 IAKICENYD------IPHIINGAYAIQNN--YYLEKLKKAFKYRVDAVVSSSDKNLLTPI 284
Query: 284 GIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNV 343
G G V + E I I+ + + + V+ L+ +G + Y +
Sbjct: 285 GGGLVYSTD-----AEFIKEISLSYPGRASA--------TPVVNTLVSLLSMGSKNYLEL 331
Query: 344 MENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFG---- 399
++N + +L E L + + +A + N D E+A L
Sbjct: 332 VKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNS--DPVEIAAKLYNLRVTGP 389
Query: 400 ----WIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKV 440
+ + V + K+
Sbjct: 390 RGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKI 434
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 37.5 bits (85), Expect = 0.003
Identities = 42/380 (11%), Positives = 90/380 (23%), Gaps = 48/380 (12%)
Query: 56 PRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDS 115
P L +S PE + ++ + +T +++ + +F
Sbjct: 3 PALGFSSDNIAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRK----FCEIFERD---- 54
Query: 116 ETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPF-----DKPNIVTGANVQVCWEKF 170
+ A L A W N P + + +
Sbjct: 55 --VEVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP 112
Query: 171 ARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAE 230
A ++ + E + + + V +I DV
Sbjct: 113 AAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDV--------- 163
Query: 231 KNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIW 290
K + +H+D + L V +++ K G++ A +
Sbjct: 164 -CKSSSL--GLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFN 220
Query: 291 RNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHEN 350
+ +L + L + + +
Sbjct: 221 TSLATEMSYRRKRAGHLSSKMR-------------FLSAQIDAYLTDDLWLRNARKANAA 267
Query: 351 AMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPAD 410
A L +GLE G ++ E ++ L + + L + G+ +
Sbjct: 268 AQRLAQGLEGLGGVEVLGGTEA-NILFCRLDS-------AMIDALLKAGFGFYHDRWGPN 319
Query: 411 AQHITVLRVVIREDFSRTLA 430
ED L
Sbjct: 320 VVRFVTSFATTAEDVDHLLN 339
>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
[TaxId: 4682]}
Length = 425
Score = 37.0 bits (85), Expect = 0.004
Identities = 40/349 (11%), Positives = 90/349 (25%), Gaps = 58/349 (16%)
Query: 104 IARLF----NAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVT 159
I L NA +D GVG ++ I ++ A +V
Sbjct: 109 IKELHEVVGNAAAKDRYIVFGVG---VTQLIHGLVISLSPNMTATPDAPES-----KVVA 160
Query: 160 GANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLN--GE 217
A + + +YF+ + + V + + ++ S N G
Sbjct: 161 HAPFYPVFREQTKYFDKKGYVWAG-------NAANYVNVSNPEQYIE--MVTSPNNPEGL 211
Query: 218 FEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHK 277
+ I+ P Y E + K SG +
Sbjct: 212 LRHAVIKGCKS------------IYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSR 259
Query: 278 YGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGF 337
+G V + + L K ++ +R
Sbjct: 260 FGWALIKDESVYNNLLN-YMTKNTEGTPRETQLRSLKVL---KEVVAMVKTQKGTMRDLN 315
Query: 338 EGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEG----------VPLVAFSLKDNKRHD 387
+ E + + L+++ RF+ + P +++ + +
Sbjct: 316 TFGFKKLR---ERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEE 372
Query: 388 EFEVAELLRRFG-WIVPAYTMPADAQHITVLRVVI--REDFSRTLAERL 433
+ + + + A ++++ R+ + +D L L
Sbjct: 373 DKDCYQTFQNGRINTQNGVGFEASSRYV---RLSLIKTQDDFDQLMYYL 418
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase
{Escherichia coli [TaxId: 562]}
Length = 401
Score = 33.6 bits (76), Expect = 0.046
Identities = 33/255 (12%), Positives = 73/255 (28%), Gaps = 19/255 (7%)
Query: 190 MDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGG 249
+ ++ E I + + L + +K +D + VD +
Sbjct: 162 QELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADK---YDALVMVDDSHAV 218
Query: 250 FIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGA 309
+ +++ G G ++++ E L
Sbjct: 219 GFVGENGRGSHEYCDVM--GRVDIITGTLGKALGGASGGYTAARKEVVEWLRQR------ 270
Query: 310 DQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSK 369
+ + S + V A L + + NA +E + G +
Sbjct: 271 -SRPYLFSNSLAPAIVAASIKVLEMVEAGSEL--RDRLWANARQFREQMSAAGFTLAGAD 327
Query: 370 DEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTL 429
+P++ L D +F A L++ G V + P + +R + +
Sbjct: 328 HAIIPVM---LGDAVVAQKF--ARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQ 382
Query: 430 AERLVLDITKVLHEL 444
R V T++ +L
Sbjct: 383 ITRAVEAFTRIGKQL 397
>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase
{Bacteriophage lambda [TaxId: 10710]}
Length = 219
Score = 29.8 bits (66), Expect = 0.54
Identities = 16/141 (11%), Positives = 38/141 (26%), Gaps = 5/141 (3%)
Query: 186 GYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDA 245
G V + VE ++ T + + +++ L N
Sbjct: 48 GDLVDRGAENVECLELITFPWFRAVRGN-----HEQMMIDGLSERGNVNHWLLNGGGWFF 102
Query: 246 ASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHIN 305
LPL+ + KY + +A + + + + + +
Sbjct: 103 NLDYDKEILAKALAHKADELPLIIELVSKDKKYVICHADYPFDEYEFGKPVDHQQVIWNR 162
Query: 306 YLGADQPTFTLNFSKGSSQVI 326
++ + KG+ I
Sbjct: 163 ERISNSQNGIVKEIKGADTFI 183
>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase
(8-amino-7-oxonanoate synthase, AONS) {Escherichia coli
[TaxId: 562]}
Length = 383
Score = 29.1 bits (64), Expect = 1.4
Identities = 26/144 (18%), Positives = 46/144 (31%), Gaps = 11/144 (7%)
Query: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 360
+ A ++ + +Q + +IR R E + G++
Sbjct: 250 VADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDAR--REKLAALITRFRAGVQD 307
Query: 361 TGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVV 420
D + + DN R ++AE LR+ G V A P LR+
Sbjct: 308 LP---FTLADSCSAIQPLIVGDNSR--ALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLT 362
Query: 421 IREDFSRTLAERLVLDITKVLHEL 444
+ +RL+ +VLH
Sbjct: 363 LTAAHEMQDIDRLL----EVLHGN 382
>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 246
Score = 28.0 bits (62), Expect = 2.4
Identities = 23/87 (26%), Positives = 30/87 (34%), Gaps = 3/87 (3%)
Query: 314 FTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGV 373
LNFS G Q Q +R + EK + I ++GV
Sbjct: 31 MRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKG--PALAEKDKQDLIFGCEQGV 88
Query: 374 PLVAFSLKDNKRHDEFEVAELLRRFGW 400
VA S KR D E+ E L+ G
Sbjct: 89 DFVAASFI-RKRSDVIEIREHLKAHGG 114
>d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein
1, N-terminal domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 629
Score = 28.1 bits (62), Expect = 2.7
Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 168 EKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDL 227
++ + F+V + + + + + + +AAI S N V L L
Sbjct: 395 KQGFKGFQVAPEHHNDHKTFIYDNTEFTLAHGS---VVIAAI-TSCTNTSNPSVMLGAGL 450
Query: 228 LAEKNKETGWDTPIHVDA 245
LA+K + G + ++
Sbjct: 451 LAKKAVDAGLNVMPYIKT 468
>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter
vinelandii [TaxId: 354]}
Length = 136
Score = 26.4 bits (57), Expect = 4.7
Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 275 GHKYGLVYAGIGWVIWRNKEDLPEEL 300
G+ YAG W W N D P EL
Sbjct: 112 GYPRVKGYAG-SWGEWGNHPDTPVEL 136
>d1i1ga2 d.58.4.2 (A:62-141) LprA {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 80
Score = 25.6 bits (56), Expect = 4.9
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 374 PLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERL 433
LV + D K FEVAE L+ + ++ Y D + V+ ED + ++ ++
Sbjct: 2 SLVTITGVDTKPEKLFEVAEKLKEYDFVKELYLSSGDHMIMAVIWAKDGEDLAEIISNKI 61
>d1v7mv_ a.26.1.2 (V:) Thrombopoietin {Human (Homo sapiens) [TaxId:
9606]}
Length = 145
Score = 26.3 bits (58), Expect = 5.1
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 426 SRTLAERLVLDITKVLH-------ELDSLPSKVLVPASEQNGRNGKKTEIETQR 472
R L +L+ D + VLH E+ LP+ VL+PA + + K ET+
Sbjct: 3 LRVL-SKLLRD-SHVLHSRLSQCPEVHPLPTPVLLPAVDFSLGEWKTQMEETKA 54
>d1eera_ a.26.1.2 (A:) Erythropoietin {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 26.4 bits (58), Expect = 5.2
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 10/57 (17%)
Query: 426 SRTLAERLVLDITKVLH-------ELDSLPSKVLVPASEQNGRNGKKTEIETQR-EV 474
SR L ER +L+ K E SL K+ VP ++ N K+ E+ Q EV
Sbjct: 9 SRVL-ERYLLE-AKEAEKITTGCAEHCSLNEKITVPDTKVNFYAWKRMEVGQQAVEV 63
>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296
{Legionella pneumophila [TaxId: 446]}
Length = 271
Score = 26.8 bits (59), Expect = 6.4
Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 18/150 (12%)
Query: 284 GIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQY------YQLIRLGF 337
GI +W ++E+LP + +I+ + TL++ GS L L
Sbjct: 56 GIN-PVWLDRENLPSLFLEYISVIKQINLNSTLSYYPGSPYFAINQLRSQDRLYLCELHP 114
Query: 338 EGYRNVMENCHENAMV---LKEGLEKTGRFNIVSKDEGVPLV----AFSLKDNKRHDEFE 390
Y +++ H N V +G+ ++ E L+ ++ K+ + +
Sbjct: 115 TEYNFLLKLPHFNKKVYVNHTDGVS--KLNALLPPPEKRGLIFIDPSYERKEEYKEIPYA 172
Query: 391 VAELLRRF--GWIVPAYTMPADAQHITVLR 418
+ +F G Y + A LR
Sbjct: 173 IKNAYSKFSTGLYCVWYPVVNKAWTEQFLR 202
>d1hhsa_ e.8.1.6 (A:) dsRNA phage RNA-dependent RNA-polymerase
{Bacteriophage PHI-6 [TaxId: 10879]}
Length = 664
Score = 26.9 bits (59), Expect = 6.7
Identities = 20/130 (15%), Positives = 38/130 (29%), Gaps = 26/130 (20%)
Query: 257 PELEWDFRLPLVKSINVSGHKYGLVYAGIGWVI--------------WRNKEDLPEELIF 302
L D P ++ SG + + I +D+P F
Sbjct: 376 HTLLGDPSNPDLEVGLSSGQGATDLMGTLLMSITYLVMQLDHTAPHLNSRIKDMPSACRF 435
Query: 303 HINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTG 362
+Y + ++ K + LG+ R ++ +LKEG
Sbjct: 436 LDSYWQGHEEIRQIS--KSDDAM---------LGWTKGRALVGGH-RLFEMLKEGKVNPS 483
Query: 363 RFNIVSKDEG 372
+ +S + G
Sbjct: 484 PYMKISYEHG 493
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.399
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,871,524
Number of extensions: 90677
Number of successful extensions: 247
Number of sequences better than 10.0: 1
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 20
Length of query: 494
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 405
Effective length of database: 1,185,626
Effective search space: 480178530
Effective search space used: 480178530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.7 bits)