Query 011059
Match_columns 494
No_of_seqs 221 out of 550
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 19:57:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011059.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011059hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rce_A Oligosaccharide transfe 96.4 0.079 2.7E-06 59.0 17.5 134 69-213 52-199 (724)
2 5hpg_A Plasminogen; serine pro 8.9 1.2E+02 0.004 23.9 1.3 21 268-288 49-69 (84)
3 1pml_A Tissue plasminogen acti 7.7 1.3E+02 0.0045 23.7 1.1 20 266-286 50-69 (86)
4 3arc_M Photosystem II reaction 7.3 1.8E+02 0.0062 19.5 1.4 18 153-170 5-22 (36)
5 3k65_A Prothrombin; coagulatio 6.8 1.6E+02 0.0056 24.7 1.3 22 267-288 60-81 (116)
6 2k4r_A Neurotrypsin; kringle d 6.7 83 0.0028 24.5 -0.6 20 268-288 44-63 (77)
7 1j7m_A Matrix metalloproteinas 6.0 2.1E+02 0.0073 22.0 1.5 26 271-300 37-62 (72)
8 2lma_A THP5 peptide; CD4+, imm 4.3 2.4E+02 0.0081 17.0 0.5 9 293-301 4-12 (26)
9 2qj2_A Hepatocyte growth facto 3.8 4E+02 0.014 24.2 1.9 22 267-288 148-169 (184)
10 1pfi_A Major coat protein of P 3.8 1.1E+03 0.037 16.2 4.6 25 123-147 21-45 (46)
No 1
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=96.41 E-value=0.079 Score=59.01 Aligned_cols=134 Identities=15% Similarity=0.031 Sum_probs=91.2
Q ss_pred cccccHHHHHHHhhc---CCCcc-cccccccchHHHHHHHHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011059 69 SIVWDSVYFVRIAQC---GYEYE-QSYAFLPLLPAFTHLLSRSVLAPLIGVIGYRAVLGLAGYIVSNVAFLFAAVYFYRL 144 (494)
Q Consensus 69 l~~WDa~~f~~IA~~---GY~~e-~~~AFfPl~P~lvr~l~~~~~~~l~~~~~~~~~~~~~~~lvs~~~~~~a~~~Ly~L 144 (494)
+..=|+-|+.+-|++ |...+ ..-.+-|+++.++..+...+ +. + ...+++.+..+.+.++++..|.+
T Consensus 52 ~~~~D~yy~~r~ar~~l~~~~~p~~~~p~g~~~~~l~a~l~~i~--g~----s----l~~v~~~lp~ifg~L~vi~~yll 121 (724)
T 3rce_A 52 ITTNDGYAFAEGARDMIAGFHQPNDLSYFGSSLSTLTYWLYSIL--PF----S----FESIILYMSTFFASLIVVPIILI 121 (724)
T ss_dssp CSCHHHHHHHHHHHHHHHSCCCTTSCCCTTCHHHHHHHHHHHSC--SS----C----HHHHHHHHHHHHGGGGHHHHHHH
T ss_pred eccCCHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHHHHc--CC----C----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999988753 44322 22355678888888887753 11 1 34666777778888889999999
Q ss_pred HHHHhCChhHHHHHHHHHhhcchhhhhhhh---cchHHHHHHHHHHHHHH---Hhcc----hHHHHHHHHHhhhcccch
Q 011059 145 SVMILKDPDAALCASLLFCFNPASIFYTSI---YSESLYALFSVGGLYYL---MSGA----LNISVLWLAISGCARSNG 213 (494)
Q Consensus 145 ~~~~~~~~~~a~~aall~~~~Pasif~sa~---YsEslF~~ls~~gl~~~---~~~~----~~~a~~~~~lA~~~RsnG 213 (494)
++++. +++.|..|+++.+++|+-+.=|++ -+|++..++...++++. .+++ ..++|++.++...+-+.|
T Consensus 122 ~~el~-~~~aGl~AAll~ai~P~~i~RS~aG~~D~e~l~i~~~ll~~~~~i~alk~~~~~~~~lagl~~~ly~~~~~gg 199 (724)
T 3rce_A 122 AREYK-LTTYGFIAALLGSIANSYYNRTMSGYYDTDMLVLVLPMLILLTFIRLTINKDIFTLLLSPIFIMIYLWWYPSS 199 (724)
T ss_dssp HHHTT-CHHHHHHHHHHHTTSHHHHHTSSTTCCSGGGGTTHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHSCGGG
T ss_pred HHHHc-CchHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcch
Confidence 99876 688999999999999996544543 46664444444444433 3332 235777777777888877
No 2
>5hpg_A Plasminogen; serine protease, kringle 5, fibrinolysis; 1.66A {Homo sapiens} SCOP: g.14.1.1 PDB: 2knf_A
Probab=8.87 E-value=1.2e+02 Score=23.91 Aligned_cols=21 Identities=33% Similarity=0.692 Sum_probs=14.2
Q ss_pred hhccCCCCCCCCcccccccCC
Q 011059 268 FNMCLGRSPDEMRPWCKAKVP 288 (494)
Q Consensus 268 ~~fC~~~~~~~~r~WC~~~~P 288 (494)
..||....+++.+|||--+-|
T Consensus 49 ~NyCRNPdgd~~~PWCyt~~~ 69 (84)
T 5hpg_A 49 KNYCRNPDGDVGGPWCYTTNP 69 (84)
T ss_dssp TTCCBCTTCCTTCCEEEBSCT
T ss_pred cccccCCCCCCCCCEeEECCC
Confidence 478976655545899965544
No 3
>1pml_A Tissue plasminogen activator kringle 2; hydrolase(serine protease); 2.38A {Homo sapiens} SCOP: g.14.1.1 PDB: 1pk2_A* 1tpk_A
Probab=7.72 E-value=1.3e+02 Score=23.71 Aligned_cols=20 Identities=35% Similarity=0.904 Sum_probs=13.8
Q ss_pred hhhhccCCCCCCCCccccccc
Q 011059 266 GYFNMCLGRSPDEMRPWCKAK 286 (494)
Q Consensus 266 ~Y~~fC~~~~~~~~r~WC~~~ 286 (494)
+-..||....++ .+|||--+
T Consensus 50 g~~NyCRNPdg~-~~PWCyt~ 69 (86)
T 1pml_A 50 GKHNYCRNPDGD-AKPWCHVL 69 (86)
T ss_dssp SSSCCCBCSSCC-SSCEEEEE
T ss_pred ccCccccCCCCC-CCCceEec
Confidence 357899766555 48999543
No 4
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=7.33 E-value=1.8e+02 Score=19.53 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=15.0
Q ss_pred hHHHHHHHHHhhcchhhh
Q 011059 153 DAALCASLLFCFNPASIF 170 (494)
Q Consensus 153 ~~a~~aall~~~~Pasif 170 (494)
..|+.|++||++-|.++-
T Consensus 5 ~l~fiAt~Lfi~iPt~FL 22 (36)
T 3arc_M 5 QLGLIATALFVLVPSVFL 22 (36)
T ss_dssp TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 468999999999998753
No 5
>3k65_A Prothrombin; coagulation, zymogen, hydrolase; 1.85A {Homo sapiens} PDB: 2hpq_P* 2hpp_P*
Probab=6.75 E-value=1.6e+02 Score=24.72 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=15.0
Q ss_pred hhhccCCCCCCCCcccccccCC
Q 011059 267 YFNMCLGRSPDEMRPWCKAKVP 288 (494)
Q Consensus 267 Y~~fC~~~~~~~~r~WC~~~~P 288 (494)
-..||....++..+|||--+-|
T Consensus 60 ~hNYCRNPDgd~~gPWCYt~d~ 81 (116)
T 3k65_A 60 VENFCRNPDGDEEGVWCYVAGK 81 (116)
T ss_dssp CTTCCBCTTCCTTCCEEECSSS
T ss_pred ccccccCCCCCCCCCeeEeCCC
Confidence 3579976655545799976655
No 6
>2k4r_A Neurotrypsin; kringle domain, disulfide-rich protein fold, serine endopeptidase, hydrolase, extracellular proteolysis; NMR {Rattus norvegicus} PDB: 2k51_A
Probab=6.71 E-value=83 Score=24.47 Aligned_cols=20 Identities=30% Similarity=0.708 Sum_probs=14.4
Q ss_pred hhccCCCCCCCCcccccccCC
Q 011059 268 FNMCLGRSPDEMRPWCKAKVP 288 (494)
Q Consensus 268 ~~fC~~~~~~~~r~WC~~~~P 288 (494)
..||....++ .+|||--+.|
T Consensus 44 ~NyCRNPdg~-~~PWCyt~~~ 63 (77)
T 2k4r_A 44 HNFCRSPDGA-GRPWCFYRNA 63 (77)
T ss_dssp SCCCEEEETT-TEEEEEEECT
T ss_pred CccccCCCCC-CCCcceecCC
Confidence 6899765555 4999976655
No 7
>1j7m_A Matrix metalloproteinase 2; beta sheet, alpha helix, hydrolase; NMR {Homo sapiens} SCOP: g.14.1.2
Probab=5.98 E-value=2.1e+02 Score=22.04 Aligned_cols=26 Identities=23% Similarity=0.758 Sum_probs=16.5
Q ss_pred cCCCCCCCCcccccccCCcchhHHhhhhhc
Q 011059 271 CLGRSPDEMRPWCKAKVPLLYNFIQSHYWG 300 (494)
Q Consensus 271 C~~~~~~~~r~WC~~~~P~~Ys~VQ~~YWn 300 (494)
|......+.++||.-+ -.|-|++-|+
T Consensus 37 Ct~~g~~~~~~WCaTT----~nyd~D~~Wg 62 (72)
T 1j7m_A 37 CTSAGRSDGKMWCATT----ANYDDDRKWG 62 (72)
T ss_dssp CBCTTCSSSCCEEESS----SBHHHHCCEE
T ss_pred cccCCCCCCceeecCc----cccCCCCCEe
Confidence 5433222358999877 3477778885
No 8
>2lma_A THP5 peptide; CD4+, immune system; NMR {Synthetic}
Probab=4.25 E-value=2.4e+02 Score=17.02 Aligned_cols=9 Identities=33% Similarity=1.032 Sum_probs=6.7
Q ss_pred HHhhhhhcc
Q 011059 293 FIQSHYWGV 301 (494)
Q Consensus 293 ~VQ~~YWnv 301 (494)
|.|.+|.+|
T Consensus 4 ylqteyydv 12 (26)
T 2lma_A 4 YLQTEYYDV 12 (26)
T ss_dssp THHHHHHTT
T ss_pred cccceeeee
Confidence 678887776
No 9
>2qj2_A Hepatocyte growth factor; HGF/SF, hormone/growth factor; 1.81A {Homo sapiens} SCOP: g.10.1.1 g.14.1.1 PDB: 1nk1_A 3mkp_A* 1gmn_A* 1gmo_A* 1bht_A* 1gp9_A* 2qj4_A
Probab=3.82 E-value=4e+02 Score=24.20 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=15.2
Q ss_pred hhhccCCCCCCCCcccccccCC
Q 011059 267 YFNMCLGRSPDEMRPWCKAKVP 288 (494)
Q Consensus 267 Y~~fC~~~~~~~~r~WC~~~~P 288 (494)
-..||....+++.+|||--+.|
T Consensus 148 ~hNYCRNPDgd~~~PWCYt~d~ 169 (184)
T 2qj2_A 148 QENYCRNPRGEEGGPWCFTSNP 169 (184)
T ss_dssp CTTCCBCSSCCTTCSEEEBSST
T ss_pred CCCcccCCCCCCCCCceEcCCC
Confidence 3679976655545899976655
No 10
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=3.79 E-value=1.1e+03 Score=16.24 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011059 123 GLAGYIVSNVAFLFAAVYFYRLSVM 147 (494)
Q Consensus 123 ~~~~~lvs~~~~~~a~~~Ly~L~~~ 147 (494)
.+++.++-.+.-++-+-++|++.|+
T Consensus 21 si~~~IVGaLvil~VAGLiysm~RK 45 (46)
T 1pfi_A 21 AIGGYIVGALVILAVAGLIYSMLRK 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566666666666666778888764
Done!