Query 011059
Match_columns 494
No_of_seqs 221 out of 550
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 19:57:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011059.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011059hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qj2a2 g.14.1.1 (A:127-209) N 13.5 32 0.0023 25.2 1.3 21 268-288 48-68 (83)
2 d2hpqp_ g.14.1.1 (P:) Meizothr 10.9 46 0.0033 24.1 1.5 21 268-288 47-67 (79)
3 d5hpga_ g.14.1.1 (A:) Plasmino 10.8 42 0.0031 24.5 1.3 19 268-286 49-67 (84)
4 d1nl1a1 g.14.1.1 (A:66-147) Pr 9.6 50 0.0036 24.0 1.3 21 268-288 47-67 (82)
5 d2axtm1 f.23.35.1 (M:1-36) Pho 9.4 62 0.0045 20.0 1.4 19 152-170 4-22 (36)
6 d1ki0a1 g.14.1.1 (A:81-163) Pl 9.2 52 0.0038 23.9 1.3 21 268-288 50-70 (83)
7 d1a0ha1 g.14.1.1 (A:164-270) M 7.2 71 0.0052 24.5 1.3 21 268-288 53-73 (109)
8 d1pmla_ g.14.1.1 (A:) Plasmino 6.5 77 0.0056 23.0 1.1 17 267-284 51-67 (86)
9 d1i71a_ g.14.1.1 (A:) Apolipop 6.1 88 0.0064 22.6 1.3 20 268-288 48-67 (83)
10 d2i9aa2 g.14.1.1 (A:50-132) Ur 6.1 79 0.0058 22.7 1.0 17 267-284 49-65 (83)
No 1
>d2qj2a2 g.14.1.1 (A:127-209) NK1 fragment of hepatocyte growth factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.45 E-value=32 Score=25.19 Aligned_cols=21 Identities=33% Similarity=0.708 Sum_probs=14.1
Q ss_pred hhccCCCCCCCCcccccccCC
Q 011059 268 FNMCLGRSPDEMRPWCKAKVP 288 (494)
Q Consensus 268 ~~fC~~~~~~~~r~WC~~~~P 288 (494)
..||....+++.+|||--.-|
T Consensus 48 hNyCRNP~~~~~~PWCy~~~~ 68 (83)
T d2qj2a2 48 ENYCRNPRGEEGGPWCFTSNP 68 (83)
T ss_dssp TTCCBCSSCCTTCSEEEBSST
T ss_pred cccccCCCCCCCCcceEeCCC
Confidence 579976655556899964433
No 2
>d2hpqp_ g.14.1.1 (P:) Meizothrombin {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.89 E-value=46 Score=24.07 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=13.9
Q ss_pred hhccCCCCCCCCcccccccCC
Q 011059 268 FNMCLGRSPDEMRPWCKAKVP 288 (494)
Q Consensus 268 ~~fC~~~~~~~~r~WC~~~~P 288 (494)
..||....++..+|||--.-|
T Consensus 47 ~NyCRNP~~~~~~PWCyt~~~ 67 (79)
T d2hpqp_ 47 ENFCRNPDGDEEGVWCYVAGK 67 (79)
T ss_dssp TTCCBCSSCCSSCCBCBCSSS
T ss_pred cccccCCCCCCCCcceEeCCC
Confidence 468976555456899964444
No 3
>d5hpga_ g.14.1.1 (A:) Plasminogen {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.77 E-value=42 Score=24.51 Aligned_cols=19 Identities=32% Similarity=0.670 Sum_probs=12.9
Q ss_pred hhccCCCCCCCCccccccc
Q 011059 268 FNMCLGRSPDEMRPWCKAK 286 (494)
Q Consensus 268 ~~fC~~~~~~~~r~WC~~~ 286 (494)
..||....++..+|||--.
T Consensus 49 ~NyCRNP~~~~~~PWCy~~ 67 (84)
T d5hpga_ 49 KNYCRNPDGDVGGPWCYTT 67 (84)
T ss_dssp TTCCBCTTCCTTCCEEEBS
T ss_pred cccccCCCCCcCCCCeEeC
Confidence 5789765544468999643
No 4
>d1nl1a1 g.14.1.1 (A:66-147) Prothrombin {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.57 E-value=50 Score=23.99 Aligned_cols=21 Identities=29% Similarity=0.697 Sum_probs=13.9
Q ss_pred hhccCCCCCCCCcccccccCC
Q 011059 268 FNMCLGRSPDEMRPWCKAKVP 288 (494)
Q Consensus 268 ~~fC~~~~~~~~r~WC~~~~P 288 (494)
..||....++..+|||--.-|
T Consensus 47 ~NyCRNP~~~~~~PWCyv~~~ 67 (82)
T d1nl1a1 47 ENFCRNPDGSITGPWCYTTSP 67 (82)
T ss_dssp TTCCBCTTCCTTCSEEEBSST
T ss_pred cccccCCCCCCCCCCeEeCCC
Confidence 468976555446899965444
No 5
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.40 E-value=62 Score=20.00 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHhhcchhhh
Q 011059 152 PDAALCASLLFCFNPASIF 170 (494)
Q Consensus 152 ~~~a~~aall~~~~Pasif 170 (494)
..+++.|+++|++-|+.+.
T Consensus 4 N~Lg~iAt~LFilvPt~FL 22 (36)
T d2axtm1 4 NQLGLIATALFVLVPSVFL 22 (36)
T ss_dssp CTTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3578899999999998753
No 6
>d1ki0a1 g.14.1.1 (A:81-163) Plasminogen {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.19 E-value=52 Score=23.89 Aligned_cols=21 Identities=33% Similarity=0.744 Sum_probs=13.6
Q ss_pred hhccCCCCCCCCcccccccCC
Q 011059 268 FNMCLGRSPDEMRPWCKAKVP 288 (494)
Q Consensus 268 ~~fC~~~~~~~~r~WC~~~~P 288 (494)
..||....++..+|||--.-|
T Consensus 50 hNyCRNP~~~~~~PWCy~~~~ 70 (83)
T d1ki0a1 50 ENYCRNPDNDPQGPWCYTTDP 70 (83)
T ss_dssp TTCCBCTTCCTTCCEEEBSCT
T ss_pred cccccCCCCCCCCCceEecCC
Confidence 578976554445799964433
No 7
>d1a0ha1 g.14.1.1 (A:164-270) Meizothrombin {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.19 E-value=71 Score=24.50 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=13.9
Q ss_pred hhccCCCCCCCCcccccccCC
Q 011059 268 FNMCLGRSPDEMRPWCKAKVP 288 (494)
Q Consensus 268 ~~fC~~~~~~~~r~WC~~~~P 288 (494)
..||....++..+|||--.-|
T Consensus 53 hNyCRNPdg~~~~PWCYv~~~ 73 (109)
T d1a0ha1 53 ENFCRNPDGDEEGAWCYVADQ 73 (109)
T ss_dssp TTSCBCTTCCTTCCEEECSSS
T ss_pred cccccCCCCCCCCceeEecCC
Confidence 579976555445899964444
No 8
>d1pmla_ g.14.1.1 (A:) Plasminogen {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.54 E-value=77 Score=23.05 Aligned_cols=17 Identities=29% Similarity=0.935 Sum_probs=12.1
Q ss_pred hhhccCCCCCCCCccccc
Q 011059 267 YFNMCLGRSPDEMRPWCK 284 (494)
Q Consensus 267 Y~~fC~~~~~~~~r~WC~ 284 (494)
-..||....+ +.+|||-
T Consensus 51 ~hNyCRNP~g-~~~PWCy 67 (86)
T d1pmla_ 51 KHNYCRNPDG-DAKPWCH 67 (86)
T ss_dssp SSCCCBCSSC-CSSCEEE
T ss_pred ccccccCCCC-CccceEE
Confidence 4689986654 3589994
No 9
>d1i71a_ g.14.1.1 (A:) Apolipoprotein A {Human (Homo sapiens), IV-7 variant [TaxId: 9606]}
Probab=6.14 E-value=88 Score=22.56 Aligned_cols=20 Identities=35% Similarity=0.916 Sum_probs=13.3
Q ss_pred hhccCCCCCCCCcccccccCC
Q 011059 268 FNMCLGRSPDEMRPWCKAKVP 288 (494)
Q Consensus 268 ~~fC~~~~~~~~r~WC~~~~P 288 (494)
..||....++ .+|||--.-|
T Consensus 48 hNyCRNP~~~-~~PWCyv~~~ 67 (83)
T d1i71a_ 48 RNYCRNPDAE-IRPWCYTMDP 67 (83)
T ss_dssp TTCCBCSSSC-SSCEEEBSST
T ss_pred cccccCCCCC-CCceEEecCC
Confidence 5789765543 5899964434
No 10
>d2i9aa2 g.14.1.1 (A:50-132) Urokinase-type plasminogen activator {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.13 E-value=79 Score=22.73 Aligned_cols=17 Identities=35% Similarity=0.856 Sum_probs=11.8
Q ss_pred hhhccCCCCCCCCccccc
Q 011059 267 YFNMCLGRSPDEMRPWCK 284 (494)
Q Consensus 267 Y~~fC~~~~~~~~r~WC~ 284 (494)
-..||....++ .+|||-
T Consensus 49 ~hNyCRNP~~~-~~PWCy 65 (83)
T d2i9aa2 49 KHNYCRNPDNR-RRPWCY 65 (83)
T ss_dssp SSCCCBCTTCB-SSCEEE
T ss_pred CcccccCCCCC-cCceeE
Confidence 35799765544 589995
Done!