BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011060
(494 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L7S8|RH3_ARATH DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Arabidopsis
thaliana GN=RH3 PE=1 SV=2
Length = 748
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/387 (85%), Positives = 362/387 (93%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEE VE ILENLP KRQSMLFSATMP+WVKKL+RKYLDNPLNIDLVG+QDEKLAE
Sbjct: 264 MLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAE 323
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAI+TT+TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL++ IA+EALHGD
Sbjct: 324 GIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGD 383
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLN FRQGKFTVLVATDVA+RGLDIPNVDL+IHYELPNDPETFVHRSGRTGR
Sbjct: 384 ISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGR 443
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEG+AILM TSSQ+RTVRSLERDVGC FEF+SPP V D+LESSA+QVVATLNGVHP+S
Sbjct: 444 AGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDS 503
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
++FF+ TAQ+L EEKGTDALAAALA LSGFS+PPSSRSL++HE+GWVTLQL RD +RG
Sbjct: 504 IKFFSATAQKLYEEKGTDALAAALAHLSGFSQPPSSRSLLSHEKGWVTLQLIRDPTNARG 563
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTIS 360
F+SARSV GFLSD+Y TAADE+GKI +IADDR+QGAVFDLPEEIAKELL K +P GN++S
Sbjct: 564 FLSARSVTGFLSDLYRTAADEVGKIFLIADDRIQGAVFDLPEEIAKELLEKDVPEGNSLS 623
Query: 361 KITKLPALQDDGPSSDNYGRFSSRDRF 387
ITKLP LQDDGPSSDNYGRFSSRDR
Sbjct: 624 MITKLPPLQDDGPSSDNYGRFSSRDRM 650
>sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Oryza
sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2
Length = 758
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/385 (81%), Positives = 353/385 (91%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE IL+ LP +RQSMLFSATMP WVKKLSR+YL+NPL IDLVG+QDEKLAE
Sbjct: 264 MLAVGFEEDVETILQQLPAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAE 323
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAI T+TSKRT+LSDLITVYAKGGKTIVFT+TKRDADEVSLALT+ IASEALHGD
Sbjct: 324 GIKLYAIPLTSTSKRTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGD 383
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR
Sbjct: 384 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 443
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGK GTAILMFT+SQRRTVRSLERDVGC+F+F+SPP +EDVLESSAE V+ATL GVH ES
Sbjct: 444 AGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTES 503
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
+++F P A+RL EE G +ALA+ALA LSGFS+PPSSRSLI+HEQGWVTLQLTRD + RG
Sbjct: 504 IQYFIPAAERLQEELGPNALASALAHLSGFSQPPSSRSLISHEQGWVTLQLTRDPGYGRG 563
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTIS 360
F S RSV GFLSDV AADE+GKI + AD++VQGAVFDLPEEIA++LL+ ++PPGNTI+
Sbjct: 564 FFSPRSVTGFLSDVSSAAADEVGKIFLTADEKVQGAVFDLPEEIARDLLSMELPPGNTIT 623
Query: 361 KITKLPALQDDGPSSDNYGRFSSRD 385
K+TKLPALQDDGP++D+YGRFS+ D
Sbjct: 624 KVTKLPALQDDGPATDSYGRFSNSD 648
>sp|Q0D8N0|RH53_ORYSJ DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp.
japonica GN=Os07g0143700 PE=2 SV=2
Length = 602
Score = 303 bits (775), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 144/225 (64%), Positives = 182/225 (80%), Gaps = 2/225 (0%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGF+EDVE+I+ENLP RQSMLFSATMPSW++K++ KYL +P+ IDLVG++D+KL E
Sbjct: 241 MLAVGFDEDVEVIMENLPQNRQSMLFSATMPSWIRKITSKYLKDPIIIDLVGDEDQKLPE 300
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI LY+I++ K +IL LI +A GGK IVFTQTKR+AD ++ A+ A +ALHGD
Sbjct: 301 GISLYSIASEHYGKPSILGPLIKEHANGGKCIVFTQTKREADRLAYAMGRSYACQALHGD 360
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ+QRERTL+GFR G+F +LVATDVAARGLDIPNVDL+IHYELPN E FVHRSGRT R
Sbjct: 361 ISQNQRERTLSGFRDGRFNILVATDVAARGLDIPNVDLVIHYELPNTSELFVHRSGRTAR 420
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS 225
AGK+G+AIL++T+ Q R VR +E+D+GCKF + P +E E+S
Sbjct: 421 AGKKGSAILIYTNDQARAVRIIEQDIGCKFTEL--PKIEVADEAS 463
>sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana
GN=RH53 PE=2 SV=1
Length = 616
Score = 300 bits (768), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 141/219 (64%), Positives = 174/219 (79%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML VGF EDVE+ILE LP KRQSM+FSATMPSW++ L++KYL+NPL +DLVG+ D+KLA+
Sbjct: 262 MLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLAD 321
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI Y+I + + +I+ L+T +AKGGK IVFTQTKRDAD +S AL EALHGD
Sbjct: 322 GITTYSIIADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALARSFKCEALHGD 381
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ QRERTL GFR G F +LVATDVAARGLD+PNVDLIIHYELPN+ ETFVHR+GRTGR
Sbjct: 382 ISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGR 441
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 219
AGK+G+AIL+++ Q R V+ +ER+VG +F + VE
Sbjct: 442 AGKKGSAILIYSQDQSRAVKIIEREVGSRFTELPSIAVE 480
>sp|Q0ILZ4|RH9_ORYSJ DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp.
japonica GN=Os12g0611200 PE=2 SV=1
Length = 628
Score = 295 bits (756), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 134/210 (63%), Positives = 170/210 (80%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+VGF+EDVE IL+ +PPKRQ+++FSATMP+W+++L++KYL NP+ IDLVG D+KLAE
Sbjct: 255 MLSVGFDEDVETILDRVPPKRQTLMFSATMPTWIQRLTQKYLKNPVTIDLVGEDDQKLAE 314
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI LY+I++ +K +L +LI +AKGGK IVFTQTKRDAD +S + +ALHGD
Sbjct: 315 GISLYSIASEGHAKPAVLGELIKEHAKGGKCIVFTQTKRDADRLSYTMGRSFQCQALHGD 374
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
I+Q QRERTL GFR+G F +L+ATDVAARGLDIPNVDL+IH+ELPN E FVHRSGRTGR
Sbjct: 375 ITQAQRERTLKGFREGHFNILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGR 434
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKF 210
AGK+G AI+M + Q R +R +E DVGCKF
Sbjct: 435 AGKKGKAIVMHSYQQSRAIRMVENDVGCKF 464
>sp|Q9LUW6|RH9_ARATH DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana
GN=RH9 PE=2 SV=1
Length = 610
Score = 293 bits (749), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 135/219 (61%), Positives = 172/219 (78%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML VGF EDVE+IL+ LP KRQSM+FSATMPSW++ L++KYL+NPL IDLVG+ D+KLA+
Sbjct: 274 MLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLAD 333
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI +Y+I+ + + +I+ L+ + KGGK IVFTQTKRDAD ++ L EALHGD
Sbjct: 334 GITMYSIAADSYGRASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGLAKSYKCEALHGD 393
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ QRERTL GFR G F++LVATDVAARGLD+PNVDL+IHYELPN+ ETFVHR+GRTGR
Sbjct: 394 ISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGR 453
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 219
AGK+G+AIL+ Q R V+ +E++VG +F + VE
Sbjct: 454 AGKKGSAILIHGQDQTRAVKMIEKEVGSRFNELPSIAVE 492
>sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp.
japonica GN=Os09g0520700 PE=2 SV=1
Length = 696
Score = 238 bits (607), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 153/380 (40%), Positives = 219/380 (57%), Gaps = 22/380 (5%)
Query: 1 MLAVGFEEDVELILENLP--PKRQSMLFSATMPSWVKKLSRKYLDN-PLNIDLVGNQDEK 57
ML +GF +DVELIL + K Q++LFSAT+P WVKKLS ++L + +DLVG++ K
Sbjct: 279 MLNMGFVDDVELILGKVEDVTKVQTLLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLK 338
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ ++ A+ ++ ++ D+I Y++GG+TI+FT+TK A ++S I S AL
Sbjct: 339 ASASVRHLALPCNRAARAQVIPDIIRCYSRGGRTIIFTETKESASDLS---GLIAGSRAL 395
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGD++Q QRE L GFR GKF VLVAT+VAARGLDI +V LII E P D E ++HRSGR
Sbjct: 396 HGDVAQAQREVILAGFRSGKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 455
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G A+++F + V +ER+ G KFE +S P DV +S+ + ++ V
Sbjct: 456 TGRAGNTGVAVMLFEPRYKFNVNRIERESGVKFEHISAPQPTDVAQSAGTEAAEAISSVS 515
Query: 238 PESVEFFTPTAQRLIEEKG---TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL-TR 293
+ F A++L+ G D LA ALA+ G++ RSL++ TL L T
Sbjct: 516 DSVIPVFREQAEQLLNSSGMSAVDLLAKALAKAVGYTD-IKKRSLLSSMDNHTTLLLQTG 574
Query: 294 DSAFSRGFMSARSVMGFLSDVYPTA--ADEIGKIHIIADDRVQGAVFDLPE-EIAKELLN 350
S ++ GF V+ L P AD G I I AD GAVFD+P E+ +
Sbjct: 575 RSVYAAGF-----VLSTLKRFMPEERLADVKG-ITITADG--TGAVFDVPSAEVEDYIQG 626
Query: 351 KQIPPGNTISKITKLPALQD 370
Q T+ ++ +LP LQ+
Sbjct: 627 AQNAAMVTVEEVKQLPPLQE 646
>sp|Q41382|RH7_SPIOL DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia oleracea GN=RH7
PE=2 SV=1
Length = 685
Score = 229 bits (585), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 145/377 (38%), Positives = 218/377 (57%), Gaps = 17/377 (4%)
Query: 1 MLAVGFEEDVELILENL--PPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEK 57
ML +GF +DVELIL + K Q++LFSAT+PSWVK++S ++L + +DLV +Q K
Sbjct: 271 MLKMGFVDDVELILGKVDHVSKVQTLLFSATLPSWVKQISTRFLKSAKKTVDLVSDQKMK 330
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ ++ I +A+++ ++ D+I Y GG++I+FT+TK A +++ LT + L
Sbjct: 331 ASISVRHIVIPCSASARPDLIPDIIRCYGSGGRSIIFTETKESASQLAGLLT---GARPL 387
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGDI Q QRE TL GFR GKF LVAT+VAARGLDI +V LII E P D E ++HRSGR
Sbjct: 388 HGDIQQTQREVTLKGFRTGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEDYIHRSGR 447
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G A++++ +R +V +ER+ G KFE +S P DV ++ + A + +
Sbjct: 448 TGRAGNTGVAVMLY-DPKRSSVTKIERESGVKFEHLSAPQPVDVAKAVGIEAAAAILQIS 506
Query: 238 PESVEFFTPTAQRLIEEKG---TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRD 294
+ F A+ L+ G D L+ ALA+ +G+S RSL+ +G+VTL L
Sbjct: 507 DSVIPAFKDAAEELLSTSGLSAVDILSKALAKAAGYSD-IKERSLLTGMEGYVTLLLDAG 565
Query: 295 SAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLP-EEIAKELLNKQI 353
F + + FL T AD I + + AD GAVFD+P +++ L+ +
Sbjct: 566 RPFYGQSFAYTVLKRFLP---ATKADSIMGVALTADK--SGAVFDVPVDDLETFLVGAEN 620
Query: 354 PPGNTISKITKLPALQD 370
G + + LP L++
Sbjct: 621 AAGVNLDVVKALPPLEE 637
>sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 PE=1 SV=3
Length = 851
Score = 227 bits (579), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 162/457 (35%), Positives = 246/457 (53%), Gaps = 57/457 (12%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 416 MLDMGFADQVEEILCVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 472
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK+DA E+S
Sbjct: 473 GKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCI 532
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 533 KQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVES 592
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + + +E+ G KF+ + P +++++S++ +
Sbjct: 593 YIHRSGRTGRAGRTGVCICFYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAI 652
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT+
Sbjct: 653 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSQAGFVTM 711
Query: 290 QLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FDL 340
+ M +S + +++G+ D +V+G V FD+
Sbjct: 712 -----------ILRCSIEMPNISYAWKELKEQLGE---SIDAKVKGMVFLKGKLGVCFDV 757
Query: 341 PEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRD------RFSRGGGS 393
E E+ K ++ T+ P L +GP GR RD R RGG
Sbjct: 758 RTEAVTEIQEKWHDSRRWQLTVATEQPEL--EGPPDGYRGRMGQRDGSRGAFRGQRGGSR 815
Query: 394 RFSRGGARGGAR--------GGGSMDRRGFRSSRSWG 422
F G RGG+R GG +R F S+++G
Sbjct: 816 NFRGQGQRGGSRNFRGQRPGGGNRGQKRSF--SKAFG 850
>sp|Q9BQ39|DDX50_HUMAN ATP-dependent RNA helicase DDX50 OS=Homo sapiens GN=DDX50 PE=1 SV=1
Length = 737
Score = 223 bits (569), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 148/390 (37%), Positives = 225/390 (57%), Gaps = 22/390 (5%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 295 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 351
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 352 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 411
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 412 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 471
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 472 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 531
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 532 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 590
Query: 290 QLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELL 349
L + + + LS A +I ++ ++ + G FD+P ++ L
Sbjct: 591 TLESLEEIQDVSCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTESERLQ 645
Query: 350 NKQIPPGNTISKITKLPALQD--DGPSSDN 377
+ +S KLP +++ DG +S N
Sbjct: 646 AEWHDSDWILSVPAKLPEIEEYYDGNTSSN 675
>sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 PE=1 SV=5
Length = 783
Score = 223 bits (569), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 167/465 (35%), Positives = 250/465 (53%), Gaps = 57/465 (12%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 344 MLDMGFADQVEEILSVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 400
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 401 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAI 460
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 461 KQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVES 520
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 521 YIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAI 580
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT+
Sbjct: 581 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISG-ATSVDQRSLINSNVGFVTM 639
Query: 290 QLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FDL 340
+ M +S + +++G+ D +V+G V FD+
Sbjct: 640 -----------ILQCSIEMPNISYAWKELKEQLGE---EIDSKVKGMVFLKGKLGVCFDV 685
Query: 341 PEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRDRFSRG------GGS 393
P E+ K +S T+ P L +GP + YG F + SRG G
Sbjct: 686 PTASVTEIQEKWHDSRRWQLSVATEQPEL--EGP-REGYGGFRGQREGSRGFRGQRDGNR 742
Query: 394 RF--SRGGARG--GARGGGSMDRRGFRSSRSWGSDDEDGFSSSRG 434
RF R G+RG G R GG G +S+RS + FS + G
Sbjct: 743 RFRGQREGSRGPRGQRSGG-----GNKSNRSQNKGQKRSFSKAFG 782
>sp|Q39189|RH7_ARATH DEAD-box ATP-dependent RNA helicase 7 OS=Arabidopsis thaliana
GN=RH7 PE=1 SV=2
Length = 671
Score = 223 bits (568), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 148/382 (38%), Positives = 214/382 (56%), Gaps = 20/382 (5%)
Query: 1 MLAVGFEEDVELILENLP--PKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEK 57
ML +GF EDVELIL + K Q++LFSAT+PSWVK +S ++L + IDLVGN K
Sbjct: 260 MLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMK 319
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ ++ AI + ++ D+I+ Y+ GG+TI+F +TK E+S L S AL
Sbjct: 320 ASNSVRHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLD---GSRAL 376
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HG+I Q QRE TL GFR GKF LVAT+VAARGLDI +V LII E P + E ++HRSGR
Sbjct: 377 HGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGR 436
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G A+ ++ S++ +V +E++ G KFE ++ P +++ S + + V
Sbjct: 437 TGRAGNTGVAVTLY-DSRKSSVSRIEKEAGIKFEHLAAPQPDEIARSGGMEAAEKVKQVC 495
Query: 238 PESVEFFTPTAQRLIEEKGTDA---LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRD 294
V F A+ L+E G A LA ALA+ +GF+ RSL+ + +VTL L
Sbjct: 496 DSVVPAFLEAAKELLETSGLSAEVLLAKALAKTAGFTE-IKKRSLLTSMENYVTLHLEA- 553
Query: 295 SAFSRGFMSARSVMGFLSDVYP-TAADEIGKIHIIADDRVQGAVFDLPE-EIAKELLNKQ 352
+ S V G L V P + I + + AD GAVFD+ + ++ + Q
Sbjct: 554 ---GKPIYSPSFVYGLLRRVLPDDKVEMIEGLSLTADK--TGAVFDVKQSDLDLFIAGAQ 608
Query: 353 IPPGNTISKITK-LPALQDDGP 373
G+ ++ K +P LQ+ P
Sbjct: 609 KSAGSMSLEVVKVMPKLQEREP 630
>sp|Q99MJ9|DDX50_MOUSE ATP-dependent RNA helicase DDX50 OS=Mus musculus GN=Ddx50 PE=2 SV=1
Length = 734
Score = 223 bits (567), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 146/390 (37%), Positives = 224/390 (57%), Gaps = 22/390 (5%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 292 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 348
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 349 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 408
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 409 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 468
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G + + +R +R +E+ G F+ V P D+++S + +
Sbjct: 469 YIHRSGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 528
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 529 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 587
Query: 290 QLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELL 349
L + + + LS A + ++ ++ + G FD+P ++ L
Sbjct: 588 TLESPEEIQDVSCAWKELNRKLSS---NAVSHVTRMCLLKGN--MGVCFDVPTSESERLQ 642
Query: 350 NKQIPPGNTISKITKLPALQD--DGPSSDN 377
+ +S KLP +++ DG +S N
Sbjct: 643 AEWHDSDWILSVPAKLPEIEEYYDGNTSSN 672
>sp|Q3B8Q1|DDX21_RAT Nucleolar RNA helicase 2 OS=Rattus norvegicus GN=Ddx21 PE=2 SV=1
Length = 782
Score = 222 bits (566), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 163/462 (35%), Positives = 246/462 (53%), Gaps = 48/462 (10%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 340 MLDMGFADQVEEILCVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 396
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK+DA E+S
Sbjct: 397 GKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCI 456
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 457 KQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVES 516
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 517 YIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAI 576
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT+
Sbjct: 577 RLLDSVPPTAIGHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSQAGFVTM 635
Query: 290 QLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FDL 340
+ M +S + +++G+ D +V+G V FD+
Sbjct: 636 -----------ILRCSVEMPNISYAWKELKEQLGE---SIDAKVKGMVFLKGKLGVCFDV 681
Query: 341 PEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRD------RFSRGGGS 393
E E+ K ++ T+ P L +GP G RD R RGG
Sbjct: 682 RTEAVTEIKEKWHDSRRWQLTVATEQPEL--EGPPEGYRGGRGQRDGSRGSFRGQRGGSR 739
Query: 394 RFSRGGARGGARG-GGSMDRRGFRSSRSWGSDDEDGFSSSRG 434
F G RGG+R G G +S+RS + FS + G
Sbjct: 740 NFRGQGQRGGSRNFRGQRPGGGNKSNRSPNKGQKRSFSKAFG 781
>sp|Q5L3G9|CSHA_GEOKA DEAD-box ATP-dependent RNA helicase CshA OS=Geobacillus
kaustophilus (strain HTA426) GN=cshA PE=3 SV=1
Length = 467
Score = 178 bits (451), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 103/278 (37%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P +RQ++LFSATMP +++++ ++++ P + + E
Sbjct: 156 MLNMGFIEDIEAILSHVPAERQTLLFSATMPDPIRRIAERFMNEPELVKV--KAKEMTVP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ Y + K IL+ L+ + A IVF +TKR DE++ AL A+E +HG
Sbjct: 214 NIQQYYLEVHEKKKFDILTRLLDIQAPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F++G +LVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLSQAKRLSVLRKFKEGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV-ATLNGVHP 238
RAGK G A+ T + + +ER K E + PP +++ LE + LN V
Sbjct: 333 RAGKTGVAMTFVTPREIGQLHHIERTTKRKMERMKPPTLDEALEGQQRIAIEKLLNVVET 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ F+ A+ L+EE D++ A L +R P +
Sbjct: 393 ENLSFYKRAAEELLEEH--DSVTIVAACLKMLTREPDT 428
>sp|Q73EU1|CSHA_BACC1 DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain
ATCC 10987) GN=cshA PE=3 SV=1
Length = 525
Score = 172 bits (436), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 96/278 (34%), Positives = 162/278 (58%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L N +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQNTIEN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>sp|Q6HPE6|CSHA_BACHK DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus thuringiensis
subsp. konkukian (strain 97-27) GN=cshA PE=3 SV=1
Length = 528
Score = 170 bits (430), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>sp|Q81VG0|CSHA_BACAN DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus anthracis
GN=cshA PE=3 SV=1
Length = 528
Score = 170 bits (430), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>sp|A0R8U6|CSHA_BACAH DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus thuringiensis
(strain Al Hakam) GN=cshA PE=3 SV=1
Length = 528
Score = 170 bits (430), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>sp|Q81IT9|CSHA_BACCR DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain
ATCC 14579 / DSM 31) GN=cshA PE=3 SV=2
Length = 533
Score = 169 bits (429), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>sp|Q63GX5|CSHA_BACCZ DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain
ZK / E33L) GN=cshA PE=3 SV=1
Length = 528
Score = 169 bits (429), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>sp|Q65N62|CSHA_BACLD DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus licheniformis
(strain DSM 13 / ATCC 14580) GN=cshA PE=3 SV=1
Length = 487
Score = 169 bits (427), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL N+P + Q++LFSATMP+ +K+++ +++ NP ++ + E
Sbjct: 157 MLNMGFIEDIESILSNVPAEHQTLLFSATMPAPIKRIAERFMTNPEHVKVKAK--EMTVS 214
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + K L+ L+ + + IVF +TKR DE++ AL +E +HG
Sbjct: 215 NIQQFYLEVHERKKFDTLTRLLDIQSPE-LAIVFGRTKRRVDELTEALNLRGYTAEGIHG 273
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F+QG VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 274 DLTQAKRMVALRKFKQGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 333
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAGK G A+ T ++ +R++E+ K + + P +++ +E + V + + E
Sbjct: 334 RAGKTGMAMTFITPREKDMLRAIEQTTKRKMDRMKAPTLDEAIEGQQQVTVDRIRTIIEE 393
Query: 240 -SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
++ F+ A L+E+ D++ A + ++ P +
Sbjct: 394 NNLNFYMTAAAELLEDH--DSVTVVAAAIKMMTKEPDN 429
>sp|P96614|CSHA_BACSU DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus subtilis
(strain 168) GN=cshA PE=1 SV=2
Length = 494
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 159/276 (57%), Gaps = 7/276 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL N+P + Q++LFSATMP+ +K+++ +++ P ++ + E
Sbjct: 157 MLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVS 214
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + K L+ L+ + + IVF +TKR DE++ AL A+E +HG
Sbjct: 215 NIQQFYLEVQERKKFDTLTRLLDIQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHG 273
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 274 DLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 333
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK G A+ T ++ +R++E+ K + + P +++ LE + V L +
Sbjct: 334 RAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTISE 393
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPP 274
++ F+ A L+E+ DA+ A + ++ P
Sbjct: 394 NNLNFYMTAAAELLEDH--DAVTVVAAAIKMATKEP 427
>sp|P42305|DBPA_BACSU ATP-dependent RNA helicase DbpA OS=Bacillus subtilis (strain 168)
GN=dbpA PE=1 SV=2
Length = 479
Score = 156 bits (395), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 145/241 (60%), Gaps = 6/241 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF E VE I+++LP +R +MLFSAT+P ++KLSR+Y+ NP +I++
Sbjct: 156 MLNMGFIEQVEAIIKHLPTERTTMLFSATLPQDIEKLSRQYMQNPEHIEVKAAG--LTTR 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ I +K ++L D++ I+F +TK ++++ L + + +HG
Sbjct: 214 NIEHAVIQVREENKFSLLKDVLMT-ENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
+ Q R +N F++G++ LVATDVAARG+DI N+ L+I+Y+LP + E++VHR+GRTG
Sbjct: 273 GMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG +G AI T+ ++R + +E +G + + + P E+V E +A LN PE
Sbjct: 333 RAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIEAPSQEEVARKKPE-FLAKLND-RPE 390
Query: 240 S 240
S
Sbjct: 391 S 391
>sp|P57453|DEAD_BUCAI Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=deaD PE=3 SV=1
Length = 601
Score = 156 bits (394), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 99/281 (35%), Positives = 156/281 (55%), Gaps = 16/281 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGN----QDE 56
ML +GF EDVE I+ +P + Q+ LFSATMP ++++S++++ NP I + N D
Sbjct: 161 MLRMGFIEDVETIMAQIPKEHQTALFSATMPEAIRRISKRFMRNPKEIKIQSNITTRPDI 220
Query: 57 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASE 115
K + + +Y T A + D TI+F +TK EVS AL + S
Sbjct: 221 KQSYWM-VYGRKTDALIRFLEAEDF-------SATIIFVRTKNATLEVSEALERNGYNSA 272
Query: 116 ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS 175
AL+GD++Q RE+TL + G+ +L+ATDVAARGLD+ + +I+Y++P D E++VHR
Sbjct: 273 ALNGDMNQALREQTLERLKNGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRI 332
Query: 176 GRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-N 234
GRTGRAG+ G A+L + +RR +R++ER + V P VE + + EQ +
Sbjct: 333 GRTGRAGRAGRALLFVENRERRLLRNIERTMKQSIPEVQLPKVELLCQRRLEQFAKKVQQ 392
Query: 235 GVHPESVEFFTPTAQRLIEEKGTD--ALAAALAQLSGFSRP 273
+ ++ ++ +L D LAAAL +++ RP
Sbjct: 393 QLESRDLDEYSALLDKLYSTDDLDIKTLAAALLKMAQGERP 433
>sp|Q89AF9|DEAD_BUCBP Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=deaD PE=3 SV=1
Length = 602
Score = 156 bits (394), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 150/286 (52%), Gaps = 35/286 (12%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE I+ +P + Q+ LFSATMP ++++SR+++ NP I
Sbjct: 161 MLRMGFIEDVETIMTEIPDRHQTALFSATMPEAIRRISRRFMKNPKEI------------ 208
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKG-------------GKTIVFTQTKRDADEVSLA 107
I + T++ I VY K TI+F +TK EVS
Sbjct: 209 -----RIQSNITTRPDIQQSYWMVYGKKTDALIRFLEAEDFSATIIFVRTKNATLEVSEV 263
Query: 108 LTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN 166
L S AL+GD++Q RE+TL + G+ +L+ATDVAARGLD+ + +I+Y++P
Sbjct: 264 LERYGYNSAALNGDMNQSLREQTLEKLKDGRLDILIATDVAARGLDVDRISFVINYDIPM 323
Query: 167 DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP----VVEDVL 222
D E++VHR GRTGRAG++G A+L + +RR +R++ER + V+ P + + L
Sbjct: 324 DSESYVHRIGRTGRAGRKGKALLFVENRERRLLRNIERAMNISISEVNLPKSDFLSKRRL 383
Query: 223 ESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 268
E A++V L+ P Q ++LAAAL +++
Sbjct: 384 EKFAQKVQIQLDSKDLHEYRGLLPKLQPNNNSLDIESLAAALLKMA 429
>sp|Q8K9H6|DEAD_BUCAP Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=deaD PE=3 SV=1
Length = 601
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/284 (35%), Positives = 159/284 (55%), Gaps = 22/284 (7%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGN----QDE 56
ML +GF EDVE I+ +P + Q+ LFSATMP ++++S++++ NP I + N D
Sbjct: 161 MLRMGFIEDVETIMSQIPKEHQTALFSATMPEAIRRISKRFMKNPQEIKIQSNITTRPDI 220
Query: 57 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASE 115
K + + +Y T A + + D TI+F +TK EVS AL + S
Sbjct: 221 KQSYWM-VYGRKTDALIRFLEVEDF-------SATIIFVKTKNATLEVSEALERNGYNSA 272
Query: 116 ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS 175
AL+GD++Q RE+TL + G+ +L+ATDVAARGLD+ + +I+Y++P D E++VHR
Sbjct: 273 ALNGDMNQALREQTLERLKSGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRI 332
Query: 176 GRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVA 231
GRTGRAG+ G A+L + +RR +R++ER + V P +E + LE A++V
Sbjct: 333 GRTGRAGRAGRALLFVENRERRLLRNIERTINQTIPEVQLPKIEVLCKRRLERFAKKVQE 392
Query: 232 TLNGVHPESVEFFTPTAQRLIEEKGTD--ALAAALAQLSGFSRP 273
L ++ ++ +L D LA+AL +++ RP
Sbjct: 393 QLES---RDLDEYSALLDKLYSPDDLDIKTLASALLKMAQGGRP 433
>sp|Q9LYJ9|RH46_ARATH DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana
GN=RH46 PE=2 SV=2
Length = 645
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 125/220 (56%), Gaps = 2/220 (0%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GFE + I+ +P KRQ+++++AT P V+K++ L NP ++ +GN DE +A
Sbjct: 319 MLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIAADLLVNPAQVN-IGNVDELVAN 377
Query: 61 GIKLYAISTTA-TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHG 119
I A K + L ++ G K I+F TKR D+++ LT + A+HG
Sbjct: 378 KSITQTIEVLAPMEKHSRLEQILRSQEPGSKIIIFCSTKRMCDQLARNLTRTFGAAAIHG 437
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D SQ +R+ LN FR G+ VLVATDVAARGLD+ ++ ++++Y+ PN E +VHR GRTG
Sbjct: 438 DKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTG 497
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 219
RAG G A F + L + + + V P V E
Sbjct: 498 RAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQVRE 537
>sp|Q5VQL1|RH14_ORYSJ DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp.
japonica GN=Os01g0172200 PE=2 SV=1
Length = 708
Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 117/192 (60%), Gaps = 2/192 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLA- 59
ML +GFE + I++ + PKRQ+++F+AT P V+K++ L NP+ ++ +GN D+ +A
Sbjct: 338 MLDMGFEPQIRKIVKQVQPKRQTLMFTATWPKEVRKIASDLLSNPVQVN-IGNTDQLVAN 396
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHG 119
+ I Y T K L ++ G K I+F TKR D+++ L + A+HG
Sbjct: 397 KSITQYVDVITPPEKSRRLDQILRSQEPGSKIIIFCSTKRMCDQLARNLARQYGASAIHG 456
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D SQ +R+ L+ FR G+ +LVATDVAARGLDI ++ ++++Y+ P E +VHR GRTG
Sbjct: 457 DKSQAERDSVLSEFRSGRCPILVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTG 516
Query: 180 RAGKEGTAILMF 191
RAG G A F
Sbjct: 517 RAGATGVAYTFF 528
>sp|Q8H136|RH14_ARATH DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana
GN=RH14 PE=1 SV=2
Length = 619
Score = 152 bits (385), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 117/192 (60%), Gaps = 2/192 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLA- 59
ML +GFE + I++ +P KRQ+++++AT P V+K++ L NP ++ +GN DE +A
Sbjct: 316 MLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVN-IGNVDELVAN 374
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHG 119
+ I + K+ L ++ G K I+F TKR D+++ LT + A+HG
Sbjct: 375 KSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQFGAAAIHG 434
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D SQ +R+ LN FR G+ VLVATDVAARGLD+ ++ +++Y+ PN E +VHR GRTG
Sbjct: 435 DKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTG 494
Query: 180 RAGKEGTAILMF 191
RAG G A F
Sbjct: 495 RAGATGQAFTFF 506
>sp|P0A4D8|EXP9_STRR6 Probable ATP-dependent RNA helicase exp9 OS=Streptococcus
pneumoniae (strain ATCC BAA-255 / R6) GN=exp9 PE=3 SV=1
Length = 524
Score = 152 bits (385), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 132/228 (57%), Gaps = 4/228 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ +P RQ++LFSATMP +K++ +++ P ++ + E E
Sbjct: 155 MLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAK--ELTTE 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
+ Y I K ++ L+ V A+ IVF +TKR DE++ L +E +HG
Sbjct: 213 LVDQYYIRVKEQEKFDTMTRLMDV-AQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q++R R L F+ G VLVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 272 DLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE 227
RAGK G +I ++ ++ +E + + + P VE+ +S +
Sbjct: 332 RAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLKPASVEESFQSKKQ 379
>sp|P0A4D7|EXP9_STRPN Probable ATP-dependent RNA helicase exp9 OS=Streptococcus
pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
GN=exp9 PE=3 SV=1
Length = 524
Score = 152 bits (385), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 132/228 (57%), Gaps = 4/228 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ +P RQ++LFSATMP +K++ +++ P ++ + E E
Sbjct: 155 MLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAK--ELTTE 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
+ Y I K ++ L+ V A+ IVF +TKR DE++ L +E +HG
Sbjct: 213 LVDQYYIRVKEQEKFDTMTRLMDV-AQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q++R R L F+ G VLVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 272 DLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE 227
RAGK G +I ++ ++ +E + + + P VE+ +S +
Sbjct: 332 RAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLKPASVEESFQSKKQ 379
>sp|Q4WP13|DED1_ASPFU ATP-dependent RNA helicase ded1 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=ded1
PE=3 SV=1
Length = 674
Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/209 (41%), Positives = 127/209 (60%), Gaps = 11/209 (5%)
Query: 1 MLAVGFEEDVELILE--NLPP--KRQSMLFSATMPSWVKKLSRKYLDNP--LNIDLVGNQ 54
ML +GFE + I+E ++P +RQ+++FSAT P ++ L+R +L + L++ VG+
Sbjct: 361 MLDMGFEPQIRRIVEGEDMPNVNERQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGST 420
Query: 55 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVS-LALTSIIA 113
E + + ++ KR++L D++ + G T++F +TKR AD +S L
Sbjct: 421 SENITQKVEY----VEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADALSDFLLNQRFP 476
Query: 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 173
+ A+HGD +Q +RER L FR G+ +LVAT VAARGLDIPNV +I+Y+LP D + +VH
Sbjct: 477 ATAIHGDRTQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVH 536
Query: 174 RSGRTGRAGKEGTAILMFTSSQRRTVRSL 202
R GRTGRAG G A F S R VR L
Sbjct: 537 RIGRTGRAGNTGIATAFFNRSNRGVVREL 565
>sp|Q2YUH3|Y1965_STAAB Probable DEAD-box ATP-dependent RNA helicase SAB1965c
OS=Staphylococcus aureus (strain bovine RF122 / ET3-1)
GN=SAB1965c PE=3 SV=1
Length = 506
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 151/271 (55%), Gaps = 10/271 (3%)
Query: 1 MLAVGFEEDVELILENLPP-KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ--DEK 57
M+ +GF +D+ I++ +P +RQ+MLFSATMP ++ L ++++ +P I + N+ D +
Sbjct: 155 MMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQ 214
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEA 116
+ E Y I K ++ + V+ + IVF +TKR DE++ AL S +E
Sbjct: 215 IEE---FYTI-VKELEKFDTFTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEG 269
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
LHGDI+Q +R L F+ + +LVATDVAARGLDI V + ++++P D E++ HR G
Sbjct: 270 LHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIG 329
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NG 235
RTGRAGKEG A+ + +R +E G K + PP ++VL++ + + + N
Sbjct: 330 RTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENW 389
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQ 266
+ ES + L+ E L AAL Q
Sbjct: 390 MSKESESRLKRISTELLNEYNDVDLVAALLQ 420
>sp|Q2FWH5|Y2316_STAA8 Probable DEAD-box ATP-dependent RNA helicase SAOUHSC_02316
OS=Staphylococcus aureus (strain NCTC 8325)
GN=SAOUHSC_02316 PE=3 SV=1
Length = 506
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 151/271 (55%), Gaps = 10/271 (3%)
Query: 1 MLAVGFEEDVELILENLPP-KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ--DEK 57
M+ +GF +D+ I++ +P +RQ+MLFSATMP ++ L ++++ +P I + N+ D +
Sbjct: 155 MMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQ 214
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEA 116
+ E Y I K ++ + V+ + IVF +TKR DE++ AL S +E
Sbjct: 215 IEE---FYTI-VKELEKFDTFTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEG 269
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
LHGDI+Q +R L F+ + +LVATDVAARGLDI V + ++++P D E++ HR G
Sbjct: 270 LHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIG 329
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NG 235
RTGRAGKEG A+ + +R +E G K + PP ++VL++ + + + N
Sbjct: 330 RTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENW 389
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQ 266
+ ES + L+ E L AAL Q
Sbjct: 390 MSKESESRLKRISTELLNEYNDVDLVAALLQ 420
>sp|Q99SH6|Y2081_STAAM Probable DEAD-box ATP-dependent RNA helicase SAV2081
OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=SAV2081 PE=3 SV=1
Length = 506
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 151/271 (55%), Gaps = 10/271 (3%)
Query: 1 MLAVGFEEDVELILENLPP-KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ--DEK 57
M+ +GF +D+ I++ +P +RQ+MLFSATMP ++ L ++++ +P I + N+ D +
Sbjct: 155 MMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQ 214
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEA 116
+ E Y I K ++ + V+ + IVF +TKR DE++ AL S +E
Sbjct: 215 IEE---FYTI-VKELEKFDTFTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEG 269
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
LHGDI+Q +R L F+ + +LVATDVAARGLDI V + ++++P D E++ HR G
Sbjct: 270 LHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIG 329
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NG 235
RTGRAGKEG A+ + +R +E G K + PP ++VL++ + + + N
Sbjct: 330 RTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENW 389
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQ 266
+ ES + L+ E L AAL Q
Sbjct: 390 MSKESESRLKRISTELLNEYNDVDLVAALLQ 420
>sp|Q5HEB9|Y2072_STAAC Probable DEAD-box ATP-dependent RNA helicase SACOL2072
OS=Staphylococcus aureus (strain COL) GN=SACOL2072 PE=3
SV=1
Length = 506
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 151/271 (55%), Gaps = 10/271 (3%)
Query: 1 MLAVGFEEDVELILENLPP-KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ--DEK 57
M+ +GF +D+ I++ +P +RQ+MLFSATMP ++ L ++++ +P I + N+ D +
Sbjct: 155 MMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQ 214
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEA 116
+ E Y I K ++ + V+ + IVF +TKR DE++ AL S +E
Sbjct: 215 IEE---FYTI-VKELEKFDTFTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEG 269
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
LHGDI+Q +R L F+ + +LVATDVAARGLDI V + ++++P D E++ HR G
Sbjct: 270 LHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIG 329
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NG 235
RTGRAGKEG A+ + +R +E G K + PP ++VL++ + + + N
Sbjct: 330 RTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENW 389
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQ 266
+ ES + L+ E L AAL Q
Sbjct: 390 MSKESESRLKRISTELLNEYNDVDLVAALLQ 420
>sp|Q2FF45|Y2037_STAA3 Probable DEAD-box ATP-dependent RNA helicase SAUSA300_2037
OS=Staphylococcus aureus (strain USA300)
GN=SAUSA300_2037 PE=3 SV=1
Length = 506
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 151/271 (55%), Gaps = 10/271 (3%)
Query: 1 MLAVGFEEDVELILENLPP-KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ--DEK 57
M+ +GF +D+ I++ +P +RQ+MLFSATMP ++ L ++++ +P I + N+ D +
Sbjct: 155 MMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQ 214
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEA 116
+ E Y I K ++ + V+ + IVF +TKR DE++ AL S +E
Sbjct: 215 IEE---FYTI-VKELEKFDTFTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEG 269
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
LHGDI+Q +R L F+ + +LVATDVAARGLDI V + ++++P D E++ HR G
Sbjct: 270 LHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIG 329
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NG 235
RTGRAGKEG A+ + +R +E G K + PP ++VL++ + + + N
Sbjct: 330 RTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENW 389
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQ 266
+ ES + L+ E L AAL Q
Sbjct: 390 MSKESESRLKRISTELLNEYNDVDLVAALLQ 420
>sp|Q7A0D2|Y2004_STAAW Probable DEAD-box ATP-dependent RNA helicase MW2004
OS=Staphylococcus aureus (strain MW2) GN=MW2004 PE=3
SV=1
Length = 506
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 151/271 (55%), Gaps = 10/271 (3%)
Query: 1 MLAVGFEEDVELILENLPP-KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ--DEK 57
M+ +GF +D+ I++ +P +RQ+MLFSATMP ++ L ++++ +P I + N+ D +
Sbjct: 155 MMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQ 214
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEA 116
+ E Y I K ++ + V+ + IVF +TKR DE++ AL S +E
Sbjct: 215 IEE---FYTI-VKELEKFDTFTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEG 269
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
LHGDI+Q +R L F+ + +LVATDVAARGLDI V + ++++P D E++ HR G
Sbjct: 270 LHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIG 329
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NG 235
RTGRAGKEG A+ + +R +E G K + PP ++VL++ + + + N
Sbjct: 330 RTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENW 389
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQ 266
+ ES + L+ E L AAL Q
Sbjct: 390 MSKESESRLKRISTELLNEYNDVDLVAALLQ 420
>sp|Q6G7M9|Y1985_STAAS Probable DEAD-box ATP-dependent RNA helicase SAS1985
OS=Staphylococcus aureus (strain MSSA476) GN=SAS1985
PE=3 SV=1
Length = 506
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 151/271 (55%), Gaps = 10/271 (3%)
Query: 1 MLAVGFEEDVELILENLPP-KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ--DEK 57
M+ +GF +D+ I++ +P +RQ+MLFSATMP ++ L ++++ +P I + N+ D +
Sbjct: 155 MMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQ 214
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEA 116
+ E Y I K ++ + V+ + IVF +TKR DE++ AL S +E
Sbjct: 215 IEE---FYTI-VKELEKFDTFTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEG 269
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
LHGDI+Q +R L F+ + +LVATDVAARGLDI V + ++++P D E++ HR G
Sbjct: 270 LHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIG 329
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NG 235
RTGRAGKEG A+ + +R +E G K + PP ++VL++ + + + N
Sbjct: 330 RTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENW 389
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQ 266
+ ES + L+ E L AAL Q
Sbjct: 390 MSKESESRLKRISTELLNEYNDVDLVAALLQ 420
>sp|Q7A4G0|Y1885_STAAN Probable DEAD-box ATP-dependent RNA helicase SA1885
OS=Staphylococcus aureus (strain N315) GN=SA1885 PE=1
SV=1
Length = 506
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 151/271 (55%), Gaps = 10/271 (3%)
Query: 1 MLAVGFEEDVELILENLPP-KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ--DEK 57
M+ +GF +D+ I++ +P +RQ+MLFSATMP ++ L ++++ +P I + N+ D +
Sbjct: 155 MMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQ 214
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEA 116
+ E Y I K ++ + V+ + IVF +TKR DE++ AL S +E
Sbjct: 215 IEE---FYTI-VKELEKFDTFTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEG 269
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
LHGDI+Q +R L F+ + +LVATDVAARGLDI V + ++++P D E++ HR G
Sbjct: 270 LHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIG 329
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NG 235
RTGRAGKEG A+ + +R +E G K + PP ++VL++ + + + N
Sbjct: 330 RTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENW 389
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQ 266
+ ES + L+ E L AAL Q
Sbjct: 390 MSKESESRLKRISTELLNEYNDVDLVAALLQ 420
>sp|Q6GEZ3|Y2168_STAAR Probable DEAD-box ATP-dependent RNA helicase SAR2168
OS=Staphylococcus aureus (strain MRSA252) GN=SAR2168
PE=3 SV=1
Length = 506
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 151/271 (55%), Gaps = 10/271 (3%)
Query: 1 MLAVGFEEDVELILENLPP-KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ--DEK 57
M+ +GF +D+ I++ +P +RQ+MLFSATMP ++ L ++++ +P I + N+ D +
Sbjct: 155 MMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQ 214
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEA 116
+ E Y I K ++ + V+ + IVF +TKR DE++ AL S +E
Sbjct: 215 IEE---FYTI-VKELEKFDTFTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEG 269
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
LHGDI+Q +R L F+ + +LVATDVAARGLDI V + ++++P D E++ HR G
Sbjct: 270 LHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIG 329
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NG 235
RTGRAGKEG A+ + +R +E G K + PP ++VL++ + + + N
Sbjct: 330 RTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENW 389
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQ 266
+ ES + L+ E L AAL Q
Sbjct: 390 MSKESESRLKRISTELLNEYNDVDLVAALLQ 420
>sp|Q4L7W0|Y956_STAHJ Probable DEAD-box ATP-dependent RNA helicase SH0956
OS=Staphylococcus haemolyticus (strain JCSC1435)
GN=SH0956 PE=3 SV=1
Length = 503
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 152/271 (56%), Gaps = 10/271 (3%)
Query: 1 MLAVGFEEDVELILENLPP-KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ--DEK 57
M+ +GF +D+ I++ +P +RQ+MLFSATMP ++ L ++++ +P + + N+ D +
Sbjct: 155 MMNMGFIDDMRFIMDKIPAEQRQTMLFSATMPKAIQTLVQQFMKSPQIVKTMNNEMSDPQ 214
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEA 116
+ E Y K ++ + V+ + IVF +TKR DE++ AL S +E
Sbjct: 215 IDE----YYTIVKELEKFDTFTNFLDVH-QPELAIVFGRTKRRVDELTSALLSKGYKAEG 269
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
LHGDI+Q +R L F+ + +LVATDVAARGLDI V + ++++P D E++ HR G
Sbjct: 270 LHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIG 329
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NG 235
RTGRAGKEG A+ + +R +E G + + PP ++VL++ + + + N
Sbjct: 330 RTGRAGKEGIAVTFVNPIEMDYIRQIEDSNGRRMNALRPPHRKEVLKAREDDIKDKVKNW 389
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQ 266
+ ES + L+EE + L A+L Q
Sbjct: 390 MSRESEARLKRISSELLEEYDSTELVASLLQ 420
>sp|A1CXK7|DED1_NEOFI ATP-dependent RNA helicase ded1 OS=Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ded1
PE=3 SV=1
Length = 676
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 126/209 (60%), Gaps = 11/209 (5%)
Query: 1 MLAVGFEEDVELILE--NLPP--KRQSMLFSATMPSWVKKLSRKYLDNP--LNIDLVGNQ 54
ML +GFE + I+E ++P +RQ+++FSAT P ++ L+R +L + L++ VG+
Sbjct: 363 MLDMGFEPQIRRIVEGEDMPNVNERQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGST 422
Query: 55 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVS-LALTSIIA 113
E + + ++ KR++L D++ + G T++F +TKR AD +S L
Sbjct: 423 SENITQKVEY----VEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADALSDFLLNQRFP 478
Query: 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 173
+ A+HGD +Q +RER L FR G+ +LVAT VAARGLDIPNV +I+Y+LP D + +VH
Sbjct: 479 ATAIHGDRTQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVH 538
Query: 174 RSGRTGRAGKEGTAILMFTSSQRRTVRSL 202
R GRTGRAG G A F R VR L
Sbjct: 539 RIGRTGRAGNTGIATAFFNRGNRGVVREL 567
>sp|C8V8H4|DED1_EMENI ATP-dependent RNA helicase ded1 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ded1
PE=3 SV=1
Length = 668
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 126/209 (60%), Gaps = 11/209 (5%)
Query: 1 MLAVGFEEDVELILE--NLPP--KRQSMLFSATMPSWVKKLSRKYLDNP--LNIDLVGNQ 54
ML +GFE + I+E ++P RQ+++FSAT P ++ L+R +L + L++ VG+
Sbjct: 357 MLDMGFEPQIRRIVEGEDMPNVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGST 416
Query: 55 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVS-LALTSIIA 113
E + + ++ KR++L D++ + G T++F +TKR AD +S +
Sbjct: 417 SENITQKVEY----VEDHDKRSVLLDILHTHGTTGLTLIFVETKRMADALSEFLINQRFP 472
Query: 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 173
+ A+HGD +Q +RER L FR G++ +LVAT VAARGLDIPNV +I+Y+LP D + +VH
Sbjct: 473 ATAIHGDRTQRERERALEMFRSGRYPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVH 532
Query: 174 RSGRTGRAGKEGTAILMFTSSQRRTVRSL 202
R GRTGRAG G A F R VR L
Sbjct: 533 RIGRTGRAGNTGIATAFFNRGNRGVVRDL 561
>sp|Q11039|DEAD_MYCTU Cold-shock DEAD box protein A homolog OS=Mycobacterium tuberculosis
GN=deaD PE=3 SV=1
Length = 563
Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 142/259 (54%), Gaps = 17/259 (6%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE IL P +Q LFSATMP ++KLS KYL +P + +AE
Sbjct: 168 MLTMGFADDVERILSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTC--KAKTAVAE 225
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I I K L+ ++ V IVF +TK+ +E++ L + ++ A+ G
Sbjct: 226 NISQSYIQVA--RKMDALTRVLEVEPFEA-MIVFVRTKQATEEIAEKLRARGFSAAAISG 282
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QRERT+ R G +LVATDVAARGLD+ + +++Y++P+D E++VHR GRTG
Sbjct: 283 DVPQAQRERTITALRDGDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTG 342
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNG 235
RAG+ G A++ + + ++++E+ P VEDV + A+ + L G
Sbjct: 343 RAGRSGAALIFVSPRELHLLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGG 402
Query: 236 VHPESVEFFTPTAQRLIEE 254
+E F +RL+EE
Sbjct: 403 ---PGIELF----RRLVEE 414
>sp|A7TKR8|DED1_VANPO ATP-dependent RNA helicase DED1 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=DED1 PE=3 SV=1
Length = 650
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 88/232 (37%), Positives = 139/232 (59%), Gaps = 13/232 (5%)
Query: 1 MLAVGFEEDVELILE--NLPP--KRQSMLFSATMPSWVKKLSRKYLDNP--LNIDLVGNQ 54
ML +GFE + I++ ++PP +RQ+++FSAT P ++ L+R +L + L++ VG+
Sbjct: 329 MLDMGFEPQIRQIVDGCDMPPVGERQTLMFSATFPDDIQHLARDFLSDYIFLSVGKVGST 388
Query: 55 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVS-LALTSIIA 113
E + + I LY K++ L DL++ + G T++F +TKR ADE++ +
Sbjct: 389 SENITQRI-LYV---EDMDKKSTLLDLLSA-SNDGLTLIFVETKRMADELTDFLIMQDFR 443
Query: 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 173
+ A+HGD +Q +RER L F+ G +LVAT VAARGLDIPNV +++Y+LP+D + +VH
Sbjct: 444 ATAIHGDRTQSERERALAAFKNGNANLLVATAVAARGLDIPNVTHVVNYDLPSDIDDYVH 503
Query: 174 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS 225
R GRTGRAG G A F R V+ + + + + PP + DV+ S
Sbjct: 504 RIGRTGRAGNTGVATAFFNRGNRNIVKGMYELLAEANQEI-PPFLNDVMRES 554
>sp|Q9SQV1|RH40_ARATH DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana
GN=RH40 PE=2 SV=1
Length = 1088
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 126/222 (56%), Gaps = 3/222 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLA- 59
ML +GFE + I+ +PP+RQ+++++AT P V+K++ L NP+ ++ +G DE A
Sbjct: 593 MLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVN-IGRVDELAAN 651
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHG 119
+ I Y K L ++ +G K I+F TKR D ++ ++ + +HG
Sbjct: 652 KAITQYVEVVPQMEKERRLEQILRSQERGSKVIIFCSTKRLCDHLARSVGRHFGAVVIHG 711
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D +Q +R+ LN FR GK VL+ATDVAARGLDI ++ ++I+Y+ P E +VHR GRTG
Sbjct: 712 DKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTG 771
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
RAG G A FT + L + + + V PP V D+
Sbjct: 772 RAGATGVAFTFFTEQDWKYAPDLIKVLEGANQQV-PPQVRDI 812
>sp|Q2UGK3|DED1_ASPOR ATP-dependent RNA helicase ded1 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=ded1 PE=3 SV=1
Length = 675
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 125/209 (59%), Gaps = 11/209 (5%)
Query: 1 MLAVGFEEDVELILE--NLPP--KRQSMLFSATMPSWVKKLSRKYLDNP--LNIDLVGNQ 54
ML +GFE + I+E ++P RQ+++FSAT P ++ L+R +L + L++ VG+
Sbjct: 359 MLDMGFEPQIRRIVEGEDMPHVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGST 418
Query: 55 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVS-LALTSIIA 113
E + + ++ KR++L D++ + G T++F +TKR AD +S L
Sbjct: 419 SENITQKVEY----VEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADSLSDFLLNQRFP 474
Query: 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 173
+ A+HGD +Q +RER L FR G+ +LVAT VAARGLDIPNV +I+Y+LP D + +VH
Sbjct: 475 ATAIHGDRTQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVH 534
Query: 174 RSGRTGRAGKEGTAILMFTSSQRRTVRSL 202
R GRTGRAG G A F R VR L
Sbjct: 535 RIGRTGRAGNTGIATAFFNRGNRGVVRDL 563
>sp|A2QI25|DED1_ASPNC ATP-dependent RNA helicase ded1 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=ded1 PE=3 SV=1
Length = 678
Score = 149 bits (376), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 125/209 (59%), Gaps = 11/209 (5%)
Query: 1 MLAVGFEEDVELILE--NLPP--KRQSMLFSATMPSWVKKLSRKYLDNP--LNIDLVGNQ 54
ML +GFE + I+E ++P RQ+++FSAT P ++ L+R +L + L++ VG+
Sbjct: 360 MLDMGFEPQIRRIVEGEDMPHVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGST 419
Query: 55 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVS-LALTSIIA 113
E + + ++ KR++L D++ + G T++F +TKR AD +S L
Sbjct: 420 SENITQKVEY----VEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADSLSDFLLNQRFP 475
Query: 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 173
+ A+HGD +Q +RER L FR G+ +LVAT VAARGLDIPNV +I+Y+LP D + +VH
Sbjct: 476 ATAIHGDRTQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVH 535
Query: 174 RSGRTGRAGKEGTAILMFTSSQRRTVRSL 202
R GRTGRAG G A F R VR L
Sbjct: 536 RIGRTGRAGNTGIATAFFNRGNRGVVRDL 564
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,952,594
Number of Sequences: 539616
Number of extensions: 8014155
Number of successful extensions: 44511
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1881
Number of HSP's successfully gapped in prelim test: 581
Number of HSP's that attempted gapping in prelim test: 32232
Number of HSP's gapped (non-prelim): 7406
length of query: 494
length of database: 191,569,459
effective HSP length: 122
effective length of query: 372
effective length of database: 125,736,307
effective search space: 46773906204
effective search space used: 46773906204
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)