Query 011060
Match_columns 494
No_of_seqs 525 out of 3301
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 07:40:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011060.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011060hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11634 ATP-dependent RNA hel 100.0 1.5E-52 3.3E-57 449.8 45.5 344 1-354 161-547 (629)
2 KOG0331 ATP-dependent RNA heli 100.0 3.2E-44 7E-49 365.1 20.0 206 1-206 251-460 (519)
3 KOG0328 Predicted ATP-dependen 100.0 7.9E-43 1.7E-47 321.4 18.5 213 1-216 181-395 (400)
4 KOG0342 ATP-dependent RNA heli 100.0 1.4E-41 3E-46 334.9 22.6 271 1-275 242-522 (543)
5 COG0513 SrmB Superfamily II DN 100.0 1.9E-41 4.2E-46 357.5 23.5 218 1-219 186-407 (513)
6 KOG0330 ATP-dependent RNA heli 100.0 3.3E-41 7.1E-46 323.3 20.2 213 1-216 216-429 (476)
7 KOG0333 U5 snRNP-like RNA heli 100.0 1.1E-40 2.5E-45 329.8 19.5 203 1-206 408-636 (673)
8 PRK11776 ATP-dependent RNA hel 100.0 3.6E-38 7.8E-43 331.3 29.8 285 1-352 159-444 (460)
9 KOG0343 RNA Helicase [RNA proc 100.0 2.5E-38 5.4E-43 314.6 21.7 214 1-216 227-444 (758)
10 KOG0345 ATP-dependent RNA heli 100.0 1.5E-38 3.2E-43 311.5 19.0 219 1-220 169-390 (567)
11 KOG0336 ATP-dependent RNA heli 100.0 1.2E-38 2.7E-43 306.7 17.0 204 1-205 379-583 (629)
12 KOG0326 ATP-dependent RNA heli 100.0 1.3E-37 2.9E-42 291.3 15.5 211 1-215 239-450 (459)
13 KOG0340 ATP-dependent RNA heli 100.0 1.5E-36 3.3E-41 288.2 17.8 217 1-217 165-384 (442)
14 KOG0338 ATP-dependent RNA heli 100.0 1.3E-36 2.9E-41 299.9 16.3 202 1-205 339-544 (691)
15 KOG0341 DEAD-box protein abstr 100.0 1.2E-36 2.5E-41 291.3 10.3 192 1-196 338-530 (610)
16 PTZ00110 helicase; Provisional 100.0 2.1E-34 4.5E-39 306.8 24.5 206 1-207 289-497 (545)
17 KOG0327 Translation initiation 100.0 7E-35 1.5E-39 280.7 18.4 211 1-216 181-392 (397)
18 KOG0332 ATP-dependent RNA heli 100.0 1.3E-34 2.9E-39 276.4 18.9 215 4-221 248-471 (477)
19 PRK10590 ATP-dependent RNA hel 100.0 5.1E-34 1.1E-38 299.0 23.7 210 1-213 161-371 (456)
20 PRK04837 ATP-dependent RNA hel 100.0 5E-34 1.1E-38 296.8 22.3 211 1-214 169-382 (423)
21 KOG0335 ATP-dependent RNA heli 100.0 1.4E-34 3.1E-39 289.9 16.9 202 1-204 238-454 (482)
22 PRK04537 ATP-dependent RNA hel 100.0 8.9E-34 1.9E-38 303.1 24.0 209 1-212 171-382 (572)
23 PLN00206 DEAD-box ATP-dependen 100.0 1.9E-32 4.2E-37 290.8 23.8 204 1-207 282-488 (518)
24 PRK11192 ATP-dependent RNA hel 100.0 4.5E-32 9.8E-37 283.2 24.0 209 1-212 159-370 (434)
25 KOG0346 RNA helicase [RNA proc 100.0 2.4E-32 5.2E-37 265.8 19.5 206 1-207 182-423 (569)
26 KOG0339 ATP-dependent RNA heli 100.0 5.1E-32 1.1E-36 267.3 18.1 200 1-202 382-583 (731)
27 PRK01297 ATP-dependent RNA hel 100.0 3.6E-31 7.8E-36 279.2 25.2 208 1-211 249-459 (475)
28 KOG0348 ATP-dependent RNA heli 100.0 9E-32 1.9E-36 267.3 14.5 207 1-207 299-567 (708)
29 PTZ00424 helicase 45; Provisio 100.0 1.9E-30 4.1E-35 268.5 22.8 213 1-216 182-396 (401)
30 KOG0347 RNA helicase [RNA proc 100.0 2.4E-31 5.1E-36 265.0 9.7 225 1-229 352-605 (731)
31 KOG0334 RNA helicase [RNA proc 100.0 2.7E-30 5.8E-35 276.0 17.8 204 1-206 527-732 (997)
32 TIGR03817 DECH_helic helicase/ 100.0 8.3E-29 1.8E-33 271.4 26.1 239 6-252 173-446 (742)
33 KOG0337 ATP-dependent RNA heli 100.0 1.5E-29 3.2E-34 245.3 11.2 211 1-213 176-387 (529)
34 PLN03137 ATP-dependent DNA hel 100.0 1.5E-27 3.3E-32 261.1 25.1 200 1-204 593-797 (1195)
35 KOG4284 DEAD box protein [Tran 100.0 2.6E-28 5.7E-33 246.9 16.4 196 4-202 183-388 (980)
36 TIGR00614 recQ_fam ATP-depende 100.0 6.1E-27 1.3E-31 246.3 26.1 196 2-204 140-343 (470)
37 PHA02653 RNA helicase NPH-II; 100.0 6.9E-27 1.5E-31 250.8 23.6 232 8-272 308-567 (675)
38 KOG0344 ATP-dependent RNA heli 100.0 1.3E-27 2.7E-32 241.6 16.3 202 2-206 301-507 (593)
39 TIGR01970 DEAH_box_HrpB ATP-de 100.0 3.5E-27 7.5E-32 258.8 20.7 250 1-280 126-403 (819)
40 PRK11664 ATP-dependent RNA hel 99.9 1.4E-26 2.9E-31 254.6 19.4 240 11-280 140-406 (812)
41 PRK11057 ATP-dependent DNA hel 99.9 5.5E-26 1.2E-30 245.4 23.2 189 6-203 158-352 (607)
42 TIGR02621 cas3_GSU0051 CRISPR- 99.9 2.7E-25 5.8E-30 240.1 19.7 184 2-192 182-389 (844)
43 TIGR01389 recQ ATP-dependent D 99.9 3E-24 6.6E-29 232.2 22.6 189 6-203 146-340 (591)
44 PRK09751 putative ATP-dependen 99.9 1.2E-23 2.5E-28 239.5 25.1 253 6-269 145-461 (1490)
45 KOG0350 DEAD-box ATP-dependent 99.9 1.8E-24 3.9E-29 214.1 15.9 191 17-208 357-554 (620)
46 PRK11131 ATP-dependent RNA hel 99.9 4.5E-24 9.7E-29 239.0 21.1 241 1-272 199-470 (1294)
47 TIGR00580 mfd transcription-re 99.9 2.9E-23 6.3E-28 230.2 22.9 193 6-205 585-787 (926)
48 TIGR01967 DEAH_box_HrpA ATP-de 99.9 4E-23 8.7E-28 232.1 20.9 242 1-273 192-464 (1283)
49 COG0514 RecQ Superfamily II DN 99.9 7.3E-23 1.6E-27 212.9 21.0 192 6-205 150-348 (590)
50 PRK13767 ATP-dependent helicas 99.9 2.7E-22 5.8E-27 224.3 26.4 184 82-269 278-474 (876)
51 TIGR01587 cas3_core CRISPR-ass 99.9 5.2E-23 1.1E-27 209.7 17.1 179 10-194 144-336 (358)
52 PRK10689 transcription-repair 99.9 1.7E-22 3.7E-27 228.7 22.9 189 11-206 739-937 (1147)
53 KOG0329 ATP-dependent RNA heli 99.9 9.2E-24 2E-28 192.9 6.3 172 5-212 202-374 (387)
54 PRK12898 secA preprotein trans 99.9 1.2E-21 2.6E-26 207.6 19.3 169 22-196 410-588 (656)
55 PRK02362 ski2-like helicase; P 99.9 2.6E-21 5.7E-26 214.1 22.3 190 2-195 150-398 (737)
56 PRK10917 ATP-dependent DNA hel 99.9 7.5E-21 1.6E-25 207.8 22.6 176 11-192 400-587 (681)
57 PRK00254 ski2-like helicase; P 99.9 1.5E-20 3.3E-25 207.5 24.0 221 1-227 150-420 (720)
58 PRK04914 ATP-dependent helicas 99.9 8.2E-21 1.8E-25 210.1 19.9 163 73-236 479-647 (956)
59 KOG0349 Putative DEAD-box RNA 99.9 2.6E-21 5.6E-26 188.5 13.3 190 1-193 375-614 (725)
60 TIGR00643 recG ATP-dependent D 99.9 2.5E-20 5.5E-25 202.3 21.6 167 20-192 386-564 (630)
61 PRK01172 ski2-like helicase; P 99.8 3.2E-19 6.9E-24 196.0 22.9 188 2-195 148-379 (674)
62 PRK05298 excinuclease ABC subu 99.8 1.2E-18 2.6E-23 189.1 25.0 139 75-214 433-586 (652)
63 PRK09401 reverse gyrase; Revie 99.8 9.7E-20 2.1E-24 206.9 16.5 163 4-180 227-430 (1176)
64 PRK09200 preprotein translocas 99.8 5.6E-19 1.2E-23 191.2 21.4 169 22-196 365-543 (790)
65 KOG0922 DEAH-box RNA helicase 99.8 5.8E-19 1.3E-23 181.8 16.8 233 12-273 188-450 (674)
66 COG1643 HrpA HrpA-like helicas 99.8 8.2E-19 1.8E-23 190.5 18.4 238 10-275 185-450 (845)
67 TIGR00631 uvrb excinuclease AB 99.8 2.5E-18 5.3E-23 185.5 20.2 128 76-204 430-563 (655)
68 TIGR03158 cas3_cyano CRISPR-as 99.8 2.5E-18 5.5E-23 174.4 18.6 157 12-179 173-357 (357)
69 PRK14701 reverse gyrase; Provi 99.8 6.3E-19 1.4E-23 204.4 15.4 187 4-202 226-464 (1638)
70 KOG0351 ATP-dependent DNA heli 99.8 3.3E-18 7.2E-23 187.9 18.8 195 6-206 404-604 (941)
71 TIGR03714 secA2 accessory Sec 99.8 4.6E-18 1E-22 182.5 19.4 167 22-196 361-539 (762)
72 KOG0923 mRNA splicing factor A 99.8 1.3E-18 2.9E-23 177.5 14.0 252 12-291 403-685 (902)
73 PHA02558 uvsW UvsW helicase; P 99.8 7.2E-18 1.6E-22 178.7 20.0 112 74-185 329-443 (501)
74 COG1201 Lhr Lhr-like helicases 99.8 3.1E-17 6.6E-22 177.0 24.6 214 10-228 174-399 (814)
75 COG1111 MPH1 ERCC4-like helica 99.8 2.7E-18 5.8E-23 171.9 14.8 122 72-194 347-481 (542)
76 TIGR00963 secA preprotein tran 99.8 6.2E-18 1.3E-22 180.5 16.8 168 22-196 342-519 (745)
77 cd00079 HELICc Helicase superf 99.8 6.4E-18 1.4E-22 146.1 13.9 127 63-190 3-131 (131)
78 TIGR01054 rgy reverse gyrase. 99.7 4.2E-17 9E-22 185.8 19.1 160 16-203 260-431 (1171)
79 PRK12906 secA preprotein trans 99.7 5.8E-17 1.3E-21 174.6 18.2 167 22-195 377-554 (796)
80 COG1202 Superfamily II helicas 99.7 2.1E-17 4.5E-22 166.7 11.8 176 13-195 365-554 (830)
81 KOG0921 Dosage compensation co 99.7 3.1E-16 6.7E-21 164.7 20.8 105 88-193 643-773 (1282)
82 KOG0352 ATP-dependent DNA heli 99.7 3.8E-17 8.2E-22 159.5 10.5 180 19-204 175-372 (641)
83 PF00271 Helicase_C: Helicase 99.7 3.1E-17 6.6E-22 129.0 7.3 76 107-182 2-78 (78)
84 PRK09694 helicase Cas3; Provis 99.7 6.6E-16 1.4E-20 170.3 20.2 107 74-183 546-664 (878)
85 TIGR00603 rad25 DNA repair hel 99.7 5.1E-16 1.1E-20 166.9 18.2 119 73-195 480-608 (732)
86 PRK12900 secA preprotein trans 99.7 1.9E-16 4.2E-21 171.6 14.0 168 23-196 536-713 (1025)
87 KOG0924 mRNA splicing factor A 99.7 2.3E-16 5.1E-21 161.6 13.5 228 19-273 499-758 (1042)
88 KOG0920 ATP-dependent RNA heli 99.7 7.1E-16 1.5E-20 167.2 16.8 236 17-272 316-606 (924)
89 PRK13766 Hef nuclease; Provisi 99.7 6.8E-16 1.5E-20 172.7 16.0 121 72-193 346-478 (773)
90 KOG0354 DEAD-box like helicase 99.7 9.3E-16 2E-20 162.1 15.1 123 72-196 394-531 (746)
91 COG1200 RecG RecG-like helicas 99.6 1.7E-14 3.6E-19 150.6 22.2 177 13-195 403-592 (677)
92 KOG0925 mRNA splicing factor A 99.6 5.8E-15 1.3E-19 146.5 17.8 230 11-273 183-448 (699)
93 TIGR00595 priA primosomal prot 99.6 8.1E-15 1.8E-19 154.6 17.6 176 18-195 127-382 (505)
94 COG1204 Superfamily II helicas 99.6 7.6E-15 1.7E-19 160.3 17.2 172 19-192 179-406 (766)
95 KOG0353 ATP-dependent DNA heli 99.6 5.4E-15 1.2E-19 142.5 12.3 191 6-200 234-473 (695)
96 PRK05580 primosome assembly pr 99.6 3E-14 6.5E-19 155.6 18.3 186 14-201 288-556 (679)
97 COG0556 UvrB Helicase subunit 99.6 1.6E-13 3.5E-18 138.2 21.1 166 20-194 386-557 (663)
98 COG4098 comFA Superfamily II D 99.6 1.1E-13 2.5E-18 132.4 19.0 177 18-199 231-421 (441)
99 COG1197 Mfd Transcription-repa 99.6 2.1E-13 4.6E-18 149.9 23.4 187 11-204 733-929 (1139)
100 smart00490 HELICc helicase sup 99.6 1.4E-14 3E-19 114.2 8.5 80 103-182 2-82 (82)
101 COG1205 Distinct helicase fami 99.5 2.7E-13 5.8E-18 150.3 17.8 194 10-207 222-437 (851)
102 COG1203 CRISPR-associated heli 99.5 3E-13 6.4E-18 149.2 15.5 172 20-194 370-550 (733)
103 KOG0950 DNA polymerase theta/e 99.5 6.5E-13 1.4E-17 142.0 14.0 118 87-204 459-621 (1008)
104 KOG0926 DEAH-box RNA helicase 99.5 8.1E-13 1.7E-17 138.1 14.0 224 20-268 414-760 (1172)
105 PRK12904 preprotein translocas 99.4 2.4E-12 5.2E-17 139.8 16.9 167 22-195 367-574 (830)
106 PRK13104 secA preprotein trans 99.4 1.9E-12 4.2E-17 140.7 15.2 168 22-195 381-588 (896)
107 KOG4150 Predicted ATP-dependen 99.4 1.4E-11 3.1E-16 124.6 19.7 223 19-245 450-694 (1034)
108 PRK13107 preprotein translocas 99.4 5.1E-12 1.1E-16 137.1 17.8 167 23-196 387-593 (908)
109 KOG0947 Cytoplasmic exosomal R 99.4 9.3E-12 2E-16 132.6 17.8 117 78-194 555-723 (1248)
110 KOG0951 RNA helicase BRR2, DEA 99.4 1.2E-11 2.7E-16 134.7 17.6 178 19-201 473-709 (1674)
111 KOG0952 DNA/RNA helicase MER3/ 99.4 4.4E-11 9.6E-16 128.9 19.7 173 19-196 274-493 (1230)
112 PLN03142 Probable chromatin-re 99.3 2.2E-11 4.8E-16 136.2 15.3 135 72-206 470-613 (1033)
113 COG1061 SSL2 DNA or RNA helica 99.2 7.5E-11 1.6E-15 123.0 13.4 93 87-180 282-375 (442)
114 PRK11448 hsdR type I restricti 99.2 8.3E-10 1.8E-14 125.8 21.0 92 88-181 698-800 (1123)
115 PF08152 GUCT: GUCT (NUC152) d 99.2 2.3E-11 4.9E-16 98.7 5.9 95 269-370 1-97 (97)
116 KOG0948 Nuclear exosomal RNA h 99.2 1.4E-10 3E-15 121.0 11.2 107 88-194 383-539 (1041)
117 COG1198 PriA Primosomal protei 99.0 1.4E-08 3.1E-13 109.7 16.8 193 7-202 337-611 (730)
118 COG4581 Superfamily II RNA hel 98.9 3.6E-08 7.9E-13 109.1 17.7 105 89-193 380-536 (1041)
119 PRK12903 secA preprotein trans 98.9 5.5E-08 1.2E-12 105.3 18.6 167 22-195 363-540 (925)
120 KOG0953 Mitochondrial RNA heli 98.9 1E-08 2.2E-13 104.3 11.0 126 79-211 349-490 (700)
121 PRK12326 preprotein translocas 98.9 4.8E-08 1E-12 104.3 15.9 169 22-196 364-549 (764)
122 PRK12899 secA preprotein trans 98.7 1.8E-07 4E-12 102.4 15.8 168 22-195 505-682 (970)
123 TIGR01407 dinG_rel DnaQ family 98.7 2.7E-07 5.9E-12 104.2 17.5 119 87-206 673-828 (850)
124 COG1110 Reverse gyrase [DNA re 98.7 5E-07 1.1E-11 98.3 18.2 131 19-165 275-416 (1187)
125 PF00098 zf-CCHC: Zinc knuckle 98.7 5.6E-09 1.2E-13 56.8 1.6 17 478-494 2-18 (18)
126 KOG0384 Chromodomain-helicase 98.6 3.8E-07 8.3E-12 100.5 14.2 121 74-194 684-811 (1373)
127 KOG0385 Chromatin remodeling c 98.6 5.3E-07 1.2E-11 95.2 14.7 137 71-207 469-614 (971)
128 PRK12901 secA preprotein trans 98.6 2.9E-07 6.2E-12 101.3 13.1 167 23-195 566-742 (1112)
129 PRK13103 secA preprotein trans 98.6 9.1E-07 2E-11 96.9 16.0 168 22-195 386-592 (913)
130 PF03880 DbpA: DbpA RNA bindin 98.6 6.5E-08 1.4E-12 74.8 5.0 61 287-354 1-61 (74)
131 PF06862 DUF1253: Protein of u 98.6 6.6E-06 1.4E-10 84.4 19.7 182 21-202 216-423 (442)
132 CHL00122 secA preprotein trans 98.4 8.7E-06 1.9E-10 89.0 18.2 126 22-154 361-491 (870)
133 KOG0387 Transcription-coupled 98.4 2.2E-06 4.8E-11 91.0 13.1 131 72-202 529-669 (923)
134 KOG0390 DNA repair protein, SN 98.4 2.2E-06 4.7E-11 92.8 12.8 119 72-190 577-701 (776)
135 KOG0391 SNF2 family DNA-depend 98.3 8.3E-06 1.8E-10 89.5 13.6 123 72-194 1259-1387(1958)
136 PRK08074 bifunctional ATP-depe 98.2 2.6E-05 5.7E-10 88.8 17.2 79 87-165 751-834 (928)
137 KOG0392 SNF2 family DNA-depend 98.2 9.5E-06 2.1E-10 89.7 12.2 123 72-194 1309-1454(1549)
138 KOG1000 Chromatin remodeling p 98.2 5.4E-06 1.2E-10 83.8 9.1 188 12-205 415-616 (689)
139 PRK12902 secA preprotein trans 98.2 5.5E-05 1.2E-09 82.9 16.2 126 22-154 376-506 (939)
140 KOG0949 Predicted helicase, DE 98.1 2.2E-05 4.7E-10 85.2 12.2 82 114-195 965-1049(1330)
141 KOG0389 SNF2 family DNA-depend 98.1 3.3E-05 7.2E-10 82.2 13.2 123 73-195 761-889 (941)
142 PRK07246 bifunctional ATP-depe 98.1 3.5E-05 7.6E-10 86.4 13.7 77 86-165 645-724 (820)
143 TIGR02562 cas3_yersinia CRISPR 98.1 7E-05 1.5E-09 83.3 15.3 89 92-183 760-881 (1110)
144 KOG1123 RNA polymerase II tran 98.1 4.1E-05 8.8E-10 77.7 12.1 119 72-194 526-653 (776)
145 PRK10590 ATP-dependent RNA hel 98.1 0.00035 7.5E-09 73.7 19.9 68 90-161 77-155 (456)
146 COG1199 DinG Rad3-related DNA 98.0 0.00016 3.5E-09 79.8 17.8 101 87-190 478-614 (654)
147 PRK11747 dinG ATP-dependent DN 98.0 6.8E-05 1.5E-09 82.9 13.3 80 83-165 529-615 (697)
148 COG4096 HsdR Type I site-speci 98.0 4E-05 8.6E-10 82.5 10.3 92 88-181 426-525 (875)
149 COG0553 HepA Superfamily II DN 97.9 7.7E-05 1.7E-09 85.0 13.3 117 73-189 692-815 (866)
150 TIGR00348 hsdR type I site-spe 97.9 0.00013 2.9E-09 80.2 14.5 93 88-181 514-634 (667)
151 KOG0386 Chromatin remodeling c 97.9 0.00014 3.1E-09 79.3 13.0 119 72-190 709-832 (1157)
152 PTZ00368 universal minicircle 97.8 2.2E-05 4.8E-10 69.5 4.8 19 476-494 129-147 (148)
153 KOG0388 SNF2 family DNA-depend 97.8 9.6E-05 2.1E-09 77.8 9.6 122 72-193 1027-1153(1185)
154 PF13307 Helicase_C_2: Helicas 97.8 8.2E-05 1.8E-09 67.2 8.0 105 87-193 8-149 (167)
155 KOG1002 Nucleotide excision re 97.8 0.00018 4E-09 72.9 10.7 122 73-194 620-749 (791)
156 PTZ00368 universal minicircle 97.7 4.9E-05 1.1E-09 67.2 5.7 68 415-494 27-95 (148)
157 KOG0331 ATP-dependent RNA heli 97.7 0.00021 4.7E-09 74.4 10.6 89 88-180 165-272 (519)
158 TIGR03117 cas_csf4 CRISPR-asso 97.7 0.001 2.2E-08 71.9 15.8 77 87-165 469-560 (636)
159 KOG0921 Dosage compensation co 97.7 0.00027 5.8E-09 76.4 10.7 52 288-349 1048-1099(1282)
160 COG5082 AIR1 Arginine methyltr 97.6 3.4E-05 7.4E-10 69.1 2.8 54 416-493 61-115 (190)
161 KOG3973 Uncharacterized conser 97.6 0.0036 7.8E-08 60.6 16.4 19 195-213 163-181 (465)
162 KOG0339 ATP-dependent RNA heli 97.6 0.0018 4E-08 66.2 14.5 68 90-161 298-376 (731)
163 COG0653 SecA Preprotein transl 97.5 0.00043 9.3E-09 75.7 9.9 118 76-195 417-546 (822)
164 PF13696 zf-CCHC_2: Zinc knuck 97.5 3.2E-05 6.9E-10 48.2 0.7 17 478-494 10-26 (32)
165 TIGR00604 rad3 DNA repair heli 97.5 0.0048 1E-07 68.7 18.0 79 88-166 522-615 (705)
166 PRK14873 primosome assembly pr 97.4 0.0031 6.7E-08 69.0 15.6 69 127-202 462-546 (665)
167 KOG1015 Transcription regulato 97.3 0.0018 4E-08 70.5 11.9 119 72-190 1125-1271(1567)
168 TIGR00596 rad1 DNA repair prot 97.3 0.0009 2E-08 74.4 9.1 58 142-202 431-525 (814)
169 COG0513 SrmB Superfamily II DN 97.1 0.00028 6E-09 75.4 3.3 67 91-161 102-180 (513)
170 KOG0951 RNA helicase BRR2, DEA 97.1 0.014 3E-07 65.9 15.7 184 10-202 1279-1502(1674)
171 PF13917 zf-CCHC_3: Zinc knuck 97.0 0.00035 7.6E-09 46.8 1.5 17 477-493 5-21 (42)
172 COG4889 Predicted helicase [Ge 96.9 0.00066 1.4E-08 73.4 3.6 101 89-189 461-583 (1518)
173 PF14787 zf-CCHC_5: GAG-polypr 96.9 0.00039 8.4E-09 44.2 1.1 16 478-493 4-19 (36)
174 KOG0335 ATP-dependent RNA heli 96.9 0.0029 6.2E-08 65.2 7.7 68 89-160 153-231 (482)
175 PRK04537 ATP-dependent RNA hel 96.8 0.027 5.9E-07 61.1 15.3 69 89-161 85-165 (572)
176 smart00343 ZnF_C2HC zinc finge 96.8 0.00048 1E-08 41.4 1.0 15 479-493 2-16 (26)
177 KOG0109 RNA-binding protein LA 96.7 0.00054 1.2E-08 64.9 1.0 16 479-494 163-178 (346)
178 PF13871 Helicase_C_4: Helicas 96.6 0.0089 1.9E-07 57.9 8.7 79 128-206 52-142 (278)
179 KOG4400 E3 ubiquitin ligase in 96.6 0.0021 4.6E-08 62.4 4.4 66 416-493 93-160 (261)
180 PF02399 Herpes_ori_bp: Origin 96.6 0.091 2E-06 57.7 16.6 101 76-182 270-377 (824)
181 PRK10917 ATP-dependent DNA hel 96.5 0.013 2.7E-07 65.0 9.7 89 73-161 294-389 (681)
182 PRK05580 primosome assembly pr 96.4 0.016 3.5E-07 64.1 10.3 90 73-163 174-266 (679)
183 KOG0330 ATP-dependent RNA heli 96.4 0.0038 8.3E-08 62.0 4.5 132 75-218 117-268 (476)
184 TIGR00595 priA primosomal prot 96.4 0.018 3.9E-07 61.4 9.8 88 73-161 9-99 (505)
185 KOG4439 RNA polymerase II tran 96.3 0.034 7.3E-07 59.3 11.1 117 73-189 729-851 (901)
186 PRK14873 primosome assembly pr 96.2 0.027 5.9E-07 61.7 10.5 91 72-163 171-265 (665)
187 TIGR00643 recG ATP-dependent D 96.0 0.028 6.2E-07 61.7 9.2 89 73-161 268-363 (630)
188 KOG0338 ATP-dependent RNA heli 95.9 0.05 1.1E-06 56.1 9.6 113 89-212 253-385 (691)
189 TIGR00580 mfd transcription-re 95.8 0.041 8.8E-07 62.7 9.8 89 73-161 484-579 (926)
190 KOG3973 Uncharacterized conser 95.6 0.04 8.6E-07 53.6 7.4 11 338-348 284-294 (465)
191 KOG4400 E3 ubiquitin ligase in 95.4 0.019 4.2E-07 55.8 4.7 19 476-494 164-182 (261)
192 KOG2340 Uncharacterized conser 95.4 0.071 1.5E-06 55.2 8.8 182 21-202 470-676 (698)
193 smart00492 HELICc3 helicase su 95.1 0.15 3.3E-06 44.5 9.1 50 117-166 27-79 (141)
194 KOG0341 DEAD-box protein abstr 95.0 0.42 9.1E-06 47.8 12.3 54 88-145 246-310 (610)
195 COG1110 Reverse gyrase [DNA re 94.7 0.13 2.7E-06 57.5 8.9 60 87-146 124-190 (1187)
196 PRK10689 transcription-repair 94.7 0.11 2.4E-06 60.5 9.1 77 85-161 646-728 (1147)
197 smart00491 HELICc2 helicase su 94.6 0.19 4E-06 44.0 8.1 42 125-166 32-80 (142)
198 KOG0336 ATP-dependent RNA heli 94.5 0.31 6.7E-06 49.1 10.2 70 88-161 294-373 (629)
199 COG5082 AIR1 Arginine methyltr 94.4 0.064 1.4E-06 48.4 4.7 73 417-493 99-171 (190)
200 KOG0701 dsRNA-specific nucleas 94.0 0.031 6.8E-07 65.6 2.4 94 89-182 293-399 (1606)
201 COG1198 PriA Primosomal protei 93.9 0.17 3.6E-06 55.8 7.7 92 69-161 225-319 (730)
202 KOG1016 Predicted DNA helicase 93.9 0.23 4.9E-06 53.8 8.2 104 88-191 719-844 (1387)
203 PRK11634 ATP-dependent RNA hel 93.7 0.4 8.6E-06 52.7 10.4 70 88-161 74-155 (629)
204 PRK14701 reverse gyrase; Provi 92.9 0.31 6.8E-06 58.7 8.4 60 87-146 121-187 (1638)
205 PF14392 zf-CCHC_4: Zinc knuck 92.9 0.038 8.3E-07 38.7 0.6 17 478-494 33-49 (49)
206 TIGR01054 rgy reverse gyrase. 92.3 0.3 6.6E-06 57.2 7.2 60 87-146 120-187 (1171)
207 KOG0347 RNA helicase [RNA proc 92.2 0.25 5.4E-06 51.6 5.6 52 90-145 265-321 (731)
208 COG1200 RecG RecG-like helicas 92.2 0.68 1.5E-05 50.0 8.9 85 77-161 300-390 (677)
209 PRK11776 ATP-dependent RNA hel 91.7 0.78 1.7E-05 48.4 9.1 69 89-161 73-153 (460)
210 PF15288 zf-CCHC_6: Zinc knuck 91.2 0.11 2.3E-06 34.4 1.1 16 478-493 3-20 (40)
211 COG5222 Uncharacterized conser 90.6 0.098 2.1E-06 49.9 0.7 21 473-493 173-193 (427)
212 PRK11192 ATP-dependent RNA hel 90.4 1.2 2.7E-05 46.5 9.0 69 89-161 74-153 (434)
213 KOG0119 Splicing factor 1/bran 90.2 0.21 4.6E-06 51.1 2.8 42 416-494 262-303 (554)
214 TIGR00614 recQ_fam ATP-depende 90.2 1.1 2.4E-05 47.5 8.4 75 87-161 50-133 (470)
215 COG1197 Mfd Transcription-repa 89.9 1.3 2.8E-05 50.7 8.9 89 73-161 627-722 (1139)
216 COG1111 MPH1 ERCC4-like helica 89.4 4.7 0.0001 42.2 11.6 69 88-161 58-137 (542)
217 KOG0334 RNA helicase [RNA proc 89.3 1.7 3.6E-05 49.0 9.0 106 89-206 439-567 (997)
218 cd00268 DEADc DEAD-box helicas 89.2 2.9 6.2E-05 38.4 9.5 70 88-161 69-149 (203)
219 KOG1513 Nuclear helicase MOP-3 88.5 0.72 1.6E-05 50.3 5.3 54 130-183 850-911 (1300)
220 PTZ00110 helicase; Provisional 87.8 2.3 5.1E-05 45.9 8.9 69 89-161 204-283 (545)
221 PRK13766 Hef nuclease; Provisi 87.6 7.2 0.00016 44.1 13.1 70 87-161 57-137 (773)
222 TIGR01389 recQ ATP-dependent D 87.5 2.3 5E-05 46.5 8.8 74 87-160 52-132 (591)
223 PRK09401 reverse gyrase; Revie 87.5 1.7 3.7E-05 51.1 8.1 73 87-160 122-206 (1176)
224 KOG1001 Helicase-like transcri 87.2 0.21 4.5E-06 54.8 0.4 118 72-189 521-643 (674)
225 PRK04837 ATP-dependent RNA hel 87.1 2.1 4.4E-05 44.7 7.8 69 89-161 84-163 (423)
226 PF00270 DEAD: DEAD/DEAH box h 87.0 4.7 0.0001 35.6 9.1 69 89-161 45-125 (169)
227 PLN03137 ATP-dependent DNA hel 85.9 3 6.6E-05 48.2 8.6 60 87-146 499-561 (1195)
228 KOG0107 Alternative splicing f 85.6 0.79 1.7E-05 40.8 3.1 17 478-494 102-118 (195)
229 PRK01297 ATP-dependent RNA hel 85.2 4.2 9E-05 43.1 9.1 70 89-161 163-243 (475)
230 PRK11057 ATP-dependent DNA hel 84.1 5.2 0.00011 43.9 9.4 59 87-145 64-123 (607)
231 PF10593 Z1: Z1 domain; Inter 83.2 13 0.00027 35.6 10.5 88 111-203 110-202 (239)
232 PRK09751 putative ATP-dependen 82.7 3.6 7.9E-05 49.3 7.8 70 88-161 37-130 (1490)
233 KOG0333 U5 snRNP-like RNA heli 82.0 2.8 6.1E-05 43.9 5.8 55 87-145 321-380 (673)
234 COG4907 Predicted membrane pro 81.9 2.2 4.7E-05 43.7 4.8 47 304-350 488-534 (595)
235 smart00487 DEXDc DEAD-like hel 81.0 3 6.5E-05 37.3 5.3 46 5-50 145-190 (201)
236 KOG0329 ATP-dependent RNA heli 80.3 14 0.00029 35.4 9.2 68 90-161 112-191 (387)
237 TIGR03817 DECH_helic helicase/ 79.5 6 0.00013 44.5 7.9 70 87-161 80-163 (742)
238 KOG0345 ATP-dependent RNA heli 79.2 7.3 0.00016 40.4 7.5 106 90-205 81-208 (567)
239 PF12683 DUF3798: Protein of u 79.0 6.8 0.00015 37.7 6.9 155 22-217 4-173 (275)
240 PF05918 API5: Apoptosis inhib 76.1 0.85 1.8E-05 48.7 0.0 18 196-213 263-280 (556)
241 KOG0350 DEAD-box ATP-dependent 75.9 7.3 0.00016 40.7 6.5 73 89-161 216-301 (620)
242 PLN00206 DEAD-box ATP-dependen 74.6 9.3 0.0002 41.0 7.5 70 88-161 196-276 (518)
243 PRK13767 ATP-dependent helicas 73.9 9.4 0.0002 43.8 7.7 69 89-161 85-178 (876)
244 TIGR00963 secA preprotein tran 72.7 17 0.00037 40.5 8.8 61 79-146 89-154 (745)
245 KOG0389 SNF2 family DNA-depend 72.0 13 0.00028 41.1 7.5 68 80-149 440-511 (941)
246 smart00493 TOPRIM topoisomeras 71.6 12 0.00026 28.2 5.6 59 91-150 2-60 (76)
247 TIGR01659 sex-lethal sex-letha 68.3 81 0.0018 31.9 12.1 58 287-353 194-256 (346)
248 PF04364 DNA_pol3_chi: DNA pol 67.6 30 0.00065 29.9 7.7 79 75-164 15-95 (137)
249 COG2519 GCD14 tRNA(1-methylade 67.6 32 0.00069 33.0 8.4 41 71-111 171-211 (256)
250 KOG0340 ATP-dependent RNA heli 66.8 9 0.0002 38.3 4.7 53 89-145 76-133 (442)
251 KOG4284 DEAD box protein [Tran 66.3 22 0.00047 38.6 7.6 83 88-175 93-189 (980)
252 PTZ00424 helicase 45; Provisio 66.0 38 0.00081 34.8 9.6 70 88-161 96-176 (401)
253 cd00046 DEXDc DEAD-like helica 66.0 33 0.00072 28.2 7.8 70 73-146 12-88 (144)
254 PF11496 HDA2-3: Class II hist 65.9 68 0.0015 31.7 10.8 122 72-193 95-244 (297)
255 PRK12898 secA preprotein trans 65.5 25 0.00055 38.7 8.3 54 87-146 143-201 (656)
256 cd01524 RHOD_Pyr_redox Member 65.1 17 0.00037 28.4 5.4 42 81-122 44-86 (90)
257 PRK13104 secA preprotein trans 64.3 26 0.00057 39.8 8.2 62 78-146 114-180 (896)
258 KOG0337 ATP-dependent RNA heli 64.1 17 0.00037 37.3 6.1 70 88-161 90-170 (529)
259 TIGR01648 hnRNP-R-Q heterogene 64.1 1.6E+02 0.0035 32.1 13.9 54 287-351 234-288 (578)
260 KOG0298 DEAD box-containing he 63.6 12 0.00027 43.4 5.5 95 87-185 1220-1315(1394)
261 COG0514 RecQ Superfamily II DN 63.2 22 0.00048 38.5 7.2 58 88-145 57-115 (590)
262 KOG0314 Predicted E3 ubiquitin 62.4 10 0.00022 39.4 4.3 22 473-494 155-176 (448)
263 KOG0346 RNA helicase [RNA proc 62.1 17 0.00038 37.4 5.8 73 75-151 75-164 (569)
264 PRK00254 ski2-like helicase; P 61.2 22 0.00048 39.9 7.2 68 87-161 67-144 (720)
265 KOG0342 ATP-dependent RNA heli 60.6 28 0.0006 36.5 7.0 105 89-206 155-282 (543)
266 TIGR00631 uvrb excinuclease AB 60.5 75 0.0016 35.3 11.0 107 69-177 37-175 (655)
267 KOG0352 ATP-dependent DNA heli 60.3 14 0.00031 37.8 4.9 81 65-146 39-122 (641)
268 cd01523 RHOD_Lact_B Member of 59.8 15 0.00033 29.3 4.2 42 81-122 54-96 (100)
269 smart00487 DEXDc DEAD-like hel 57.8 74 0.0016 28.0 9.0 86 72-161 35-135 (201)
270 PRK02362 ski2-like helicase; P 57.2 20 0.00043 40.4 6.0 75 80-161 59-143 (737)
271 KOG0348 ATP-dependent RNA heli 56.8 16 0.00034 38.7 4.6 68 89-161 212-293 (708)
272 PRK05728 DNA polymerase III su 56.3 37 0.0008 29.6 6.3 82 70-164 10-94 (142)
273 COG4907 Predicted membrane pro 56.2 9.4 0.0002 39.3 2.8 14 19-32 116-129 (595)
274 PRK12899 secA preprotein trans 56.1 45 0.00097 38.2 8.3 53 88-146 135-192 (970)
275 PRK01172 ski2-like helicase; P 55.8 28 0.00061 38.7 6.9 74 81-161 58-141 (674)
276 PF12353 eIF3g: Eukaryotic tra 55.5 6 0.00013 33.9 1.1 17 477-494 107-123 (128)
277 COG4359 Uncharacterized conser 54.5 69 0.0015 29.2 7.6 87 2-96 74-166 (220)
278 TIGR00696 wecB_tagA_cpsF bacte 54.2 68 0.0015 29.1 7.9 63 75-137 34-100 (177)
279 COG1201 Lhr Lhr-like helicases 54.1 30 0.00065 39.0 6.6 68 90-161 75-155 (814)
280 KOG0343 RNA Helicase [RNA proc 53.7 9.2 0.0002 40.5 2.3 52 89-145 142-198 (758)
281 PRK09200 preprotein translocas 53.5 51 0.0011 37.3 8.2 60 79-145 111-176 (790)
282 PLN03134 glycine-rich RNA-bind 53.5 1.5E+02 0.0033 25.7 12.9 58 286-352 34-96 (144)
283 KOG2044 5'-3' exonuclease HKE1 53.3 5.9 0.00013 43.4 0.9 16 478-493 262-277 (931)
284 cd01521 RHOD_PspE2 Member of t 52.4 26 0.00057 28.6 4.6 39 84-122 60-101 (110)
285 PRK05298 excinuclease ABC subu 48.8 1.6E+02 0.0034 32.8 11.2 108 69-178 40-179 (652)
286 KOG1133 Helicase of the DEAD s 48.8 4.2E+02 0.0091 29.5 15.1 76 88-166 629-720 (821)
287 PF03808 Glyco_tran_WecB: Glyc 48.6 84 0.0018 28.2 7.6 63 75-137 34-101 (172)
288 KOG2673 Uncharacterized conser 48.5 8.7 0.00019 39.5 1.2 16 479-494 131-146 (485)
289 PRK06958 single-stranded DNA-b 47.2 78 0.0017 28.9 7.0 7 286-292 28-34 (182)
290 KOG0105 Alternative splicing f 47.1 78 0.0017 28.7 6.7 43 302-349 18-63 (241)
291 COG0610 Type I site-specific r 46.9 1.3E+02 0.0027 35.2 10.3 82 126-208 580-666 (962)
292 COG1204 Superfamily II helicas 46.1 58 0.0013 36.8 7.3 79 76-161 63-152 (766)
293 COG1512 Beta-propeller domains 45.8 26 0.00057 34.0 4.0 31 165-195 76-109 (271)
294 cd01518 RHOD_YceA Member of th 45.7 61 0.0013 25.8 5.7 37 86-122 59-97 (101)
295 KOG0383 Predicted helicase [Ge 45.5 20 0.00044 39.5 3.5 77 74-150 616-696 (696)
296 PRK14086 dnaA chromosomal repl 45.5 74 0.0016 34.8 7.7 22 301-322 523-544 (617)
297 COG1205 Distinct helicase fami 45.3 55 0.0012 37.4 7.1 100 88-191 115-238 (851)
298 COG0052 RpsB Ribosomal protein 45.3 47 0.001 31.7 5.4 37 74-110 49-85 (252)
299 KOG0385 Chromatin remodeling c 44.6 90 0.002 34.8 8.0 57 87-145 216-275 (971)
300 TIGR02621 cas3_GSU0051 CRISPR- 44.4 41 0.00088 38.2 5.7 53 89-145 62-143 (844)
301 PF14617 CMS1: U3-containing 9 44.3 80 0.0017 30.4 7.0 69 89-160 127-206 (252)
302 PF12689 Acid_PPase: Acid Phos 43.9 85 0.0018 28.2 6.7 121 5-135 45-168 (169)
303 KOG0116 RasGAP SH3 binding pro 43.7 1.6E+02 0.0034 30.7 9.4 22 301-322 299-320 (419)
304 cd06533 Glyco_transf_WecG_TagA 43.0 1.3E+02 0.0028 27.0 7.9 63 75-137 32-99 (171)
305 COG2927 HolC DNA polymerase II 42.9 2E+02 0.0044 25.1 8.5 78 77-165 17-96 (144)
306 PRK12904 preprotein translocas 41.8 99 0.0022 35.1 8.2 62 78-146 113-179 (830)
307 PRK06646 DNA polymerase III su 40.2 1.1E+02 0.0023 27.1 6.7 82 70-164 10-93 (154)
308 cd01535 4RHOD_Repeat_4 Member 39.2 73 0.0016 27.7 5.5 45 77-121 38-84 (145)
309 smart00450 RHOD Rhodanese Homo 39.1 43 0.00094 25.9 3.8 36 87-122 55-92 (100)
310 cd06578 HemD Uroporphyrinogen- 38.8 1.7E+02 0.0037 27.0 8.5 36 75-110 108-143 (239)
311 TIGR02329 propionate_PrpR prop 38.7 3E+02 0.0066 29.6 11.1 136 6-145 15-153 (526)
312 COG0353 RecR Recombinational D 38.7 71 0.0015 29.3 5.3 64 87-150 77-149 (198)
313 KOG0107 Alternative splicing f 38.7 3E+02 0.0066 24.9 11.9 60 285-353 9-69 (195)
314 COG3587 Restriction endonuclea 38.6 66 0.0014 36.2 6.0 71 137-207 483-566 (985)
315 cd01444 GlpE_ST GlpE sulfurtra 37.7 72 0.0016 24.8 4.9 43 79-121 47-91 (96)
316 KOG0952 DNA/RNA helicase MER3/ 37.7 1.1E+02 0.0023 35.5 7.4 83 88-177 164-267 (1230)
317 PF12614 RRF_GI: Ribosome recy 36.1 1.5E+02 0.0033 25.2 6.5 85 167-267 8-96 (128)
318 KOG2560 RNA splicing factor - 35.5 9.4 0.0002 39.2 -0.8 16 477-492 113-128 (529)
319 cd01528 RHOD_2 Member of the R 35.0 94 0.002 24.7 5.2 36 87-122 57-94 (101)
320 COG1512 Beta-propeller domains 34.8 50 0.0011 32.1 4.0 8 138-145 101-108 (271)
321 COG4098 comFA Superfamily II D 33.8 5.3E+02 0.011 26.3 11.9 133 23-181 91-231 (441)
322 PF01751 Toprim: Toprim domain 33.8 28 0.0006 28.1 1.8 60 91-150 1-73 (100)
323 PF13245 AAA_19: Part of AAA d 33.6 79 0.0017 24.1 4.3 40 69-108 18-62 (76)
324 cd01533 4RHOD_Repeat_2 Member 33.1 1E+02 0.0022 24.9 5.2 36 87-122 65-103 (109)
325 PTZ00240 60S ribosomal protein 33.1 2.9E+02 0.0063 27.7 9.1 40 149-189 119-161 (323)
326 KOG0351 ATP-dependent DNA heli 33.0 85 0.0018 36.3 6.0 57 89-145 305-364 (941)
327 cd01529 4RHOD_Repeats Member o 32.2 80 0.0017 24.8 4.3 36 86-121 54-91 (96)
328 cd00188 TOPRIM Topoisomerase-p 31.9 1.4E+02 0.0031 21.7 5.6 60 91-151 2-61 (83)
329 cd00032 CASc Caspase, interleu 30.8 4.7E+02 0.01 24.8 10.5 83 88-176 9-108 (243)
330 smart00115 CASc Caspase, inter 30.6 3.5E+02 0.0076 25.7 9.1 83 87-175 7-106 (241)
331 PF11019 DUF2608: Protein of u 30.5 4.9E+02 0.011 24.9 10.7 53 66-118 155-209 (252)
332 PHA02653 RNA helicase NPH-II; 30.3 1.2E+02 0.0025 33.9 6.4 68 88-161 222-297 (675)
333 PRK00162 glpE thiosulfate sulf 29.5 1.2E+02 0.0026 24.5 5.0 45 78-122 48-94 (108)
334 PRK15483 type III restriction- 29.3 1.6E+02 0.0035 34.1 7.4 70 137-206 501-580 (986)
335 PF02445 NadA: Quinolinate syn 29.2 4.2E+02 0.0092 26.1 9.3 167 32-236 89-272 (296)
336 cd01526 RHOD_ThiF Member of th 29.1 75 0.0016 26.4 3.8 36 86-121 70-108 (122)
337 KOG1257 NADP+-dependent malic 28.7 7.6E+02 0.016 26.5 16.4 223 91-339 115-358 (582)
338 KOG0116 RasGAP SH3 binding pro 28.3 1.1E+02 0.0023 31.9 5.3 9 139-147 122-130 (419)
339 cd01027 TOPRIM_RNase_M5_like T 28.0 1.5E+02 0.0033 22.9 5.1 53 91-147 3-55 (81)
340 PRK01415 hypothetical protein; 27.9 83 0.0018 30.2 4.2 38 86-123 169-208 (247)
341 cd01449 TST_Repeat_2 Thiosulfa 27.9 1.3E+02 0.0027 24.6 5.0 45 77-121 65-113 (118)
342 cd01520 RHOD_YbbB Member of th 27.6 1.1E+02 0.0025 25.6 4.7 38 85-122 83-122 (128)
343 cd01527 RHOD_YgaP Member of th 27.5 92 0.002 24.6 3.9 36 86-121 52-89 (99)
344 PF07652 Flavi_DEAD: Flaviviru 26.8 1.3E+02 0.0028 26.4 4.8 35 76-110 20-55 (148)
345 PHA02558 uvsW UvsW helicase; P 26.4 3.1E+02 0.0067 29.3 8.8 80 71-161 139-228 (501)
346 TIGR03714 secA2 accessory Sec 26.2 2.1E+02 0.0046 32.2 7.5 61 79-146 103-173 (762)
347 COG1587 HemD Uroporphyrinogen- 26.1 2.3E+02 0.005 26.9 7.1 40 74-113 108-148 (248)
348 cd01534 4RHOD_Repeat_3 Member 25.8 97 0.0021 24.3 3.7 34 88-121 56-90 (95)
349 cd01522 RHOD_1 Member of the R 25.7 1.4E+02 0.0029 24.7 4.7 37 86-122 62-100 (117)
350 COG1922 WecG Teichoic acid bio 25.4 3.3E+02 0.0071 26.3 7.7 68 73-140 92-164 (253)
351 KOG0386 Chromatin remodeling c 25.1 1E+02 0.0023 35.3 4.8 70 76-145 432-501 (1157)
352 cd00158 RHOD Rhodanese Homolog 25.1 1.3E+02 0.0027 22.7 4.2 36 86-121 48-85 (89)
353 PRK03692 putative UDP-N-acetyl 24.9 3.1E+02 0.0068 26.2 7.6 64 74-137 90-157 (243)
354 COG0135 TrpF Phosphoribosylant 24.7 4.5E+02 0.0097 24.5 8.3 59 73-133 38-97 (208)
355 PRK13103 secA preprotein trans 24.6 3.1E+02 0.0068 31.5 8.4 65 76-147 112-181 (913)
356 COG0300 DltE Short-chain dehyd 24.4 3.2E+02 0.0068 26.6 7.5 57 87-143 29-90 (265)
357 cd01448 TST_Repeat_1 Thiosulfa 23.9 1.5E+02 0.0033 24.3 4.8 36 87-122 78-116 (122)
358 cd01532 4RHOD_Repeat_1 Member 23.9 1.2E+02 0.0027 23.6 4.0 36 87-122 49-88 (92)
359 PF10657 RC-P840_PscD: Photosy 23.9 1.1E+02 0.0024 25.6 3.6 37 127-163 64-106 (144)
360 PF02602 HEM4: Uroporphyrinoge 23.4 88 0.0019 29.1 3.6 126 8-139 29-170 (231)
361 PF08095 Toxin_25: Hefutoxin f 23.4 8.2 0.00018 21.4 -2.0 15 478-492 3-18 (22)
362 COG3973 Superfamily I DNA and 23.3 8.4E+02 0.018 26.9 10.8 121 24-164 592-716 (747)
363 PRK06827 phosphoribosylpyropho 22.6 2.3E+02 0.0051 29.1 6.6 59 88-147 264-329 (382)
364 cd01519 RHOD_HSP67B2 Member of 22.6 1E+02 0.0022 24.6 3.3 35 87-121 65-101 (106)
365 TIGR00036 dapB dihydrodipicoli 22.2 2.5E+02 0.0054 27.1 6.5 58 88-145 69-126 (266)
366 PLN02160 thiosulfate sulfurtra 22.1 1.6E+02 0.0035 25.2 4.6 37 86-122 79-117 (136)
367 KOG3293 Small nuclear ribonucl 21.9 2.8E+02 0.0061 23.2 5.5 15 337-351 68-82 (134)
368 COG5179 TAF1 Transcription ini 21.8 41 0.00088 36.1 0.9 17 477-493 938-956 (968)
369 COG0074 SucD Succinyl-CoA synt 21.8 5.6E+02 0.012 25.1 8.5 63 74-137 53-116 (293)
370 PRK06739 pyruvate kinase; Vali 21.8 4.3E+02 0.0094 26.8 8.2 65 88-152 180-279 (352)
371 PF06200 tify: tify domain; I 21.3 97 0.0021 20.1 2.2 16 336-351 17-33 (36)
372 cd01531 Acr2p Eukaryotic arsen 21.3 3E+02 0.0065 22.2 6.0 36 87-122 61-107 (113)
373 PRK10310 PTS system galactitol 21.1 3.5E+02 0.0077 21.4 6.1 61 90-157 4-71 (94)
374 cd05212 NAD_bind_m-THF_DH_Cycl 21.0 5.5E+02 0.012 22.2 8.6 84 76-166 13-103 (140)
375 COG1099 Predicted metal-depend 20.9 7.3E+02 0.016 23.6 9.4 78 69-153 134-219 (254)
376 cd01525 RHOD_Kc Member of the 20.6 1.3E+02 0.0029 23.8 3.7 35 88-122 65-101 (105)
377 PRK13107 preprotein translocas 20.6 3.1E+02 0.0068 31.5 7.5 63 77-146 113-180 (908)
378 cd05568 PTS_IIB_bgl_like PTS_I 20.6 3.8E+02 0.0082 20.1 7.2 55 90-148 2-57 (85)
379 KOG0119 Splicing factor 1/bran 20.5 49 0.0011 34.6 1.1 16 479-494 264-279 (554)
380 cd01447 Polysulfide_ST Polysul 20.5 1E+02 0.0022 24.3 2.9 36 86-121 59-96 (103)
381 COG4152 ABC-type uncharacteriz 20.4 5.3E+02 0.011 25.0 7.8 81 74-161 165-248 (300)
382 KOG1137 mRNA cleavage and poly 20.2 1.1E+03 0.024 25.5 11.5 46 113-158 415-464 (668)
383 COG0553 HepA Superfamily II DN 20.2 49 0.0011 37.7 1.2 38 142-181 484-521 (866)
No 1
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.5e-52 Score=449.79 Aligned_cols=344 Identities=29% Similarity=0.470 Sum_probs=298.9
Q ss_pred CCcCCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHH
Q 011060 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (494)
||+|||.++|+.|++.+|+..|+++||||+|+.+..++++|+.+|..|.+.. .......+.+.++.+....|.+.|..
T Consensus 161 ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~--~~~~~~~i~q~~~~v~~~~k~~~L~~ 238 (629)
T PRK11634 161 MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQS--SVTTRPDISQSYWTVWGMRKNEALVR 238 (629)
T ss_pred HhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccC--ccccCCceEEEEEEechhhHHHHHHH
Confidence 7899999999999999999999999999999999999999999998887653 23345567777777777788888888
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEE
Q 011060 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~V 159 (494)
++... ...++||||+|+..++.|++.|.. ++.+..+|++|++.+|++++++|++|+++||||||++++|||+|+|++|
T Consensus 239 ~L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~V 317 (629)
T PRK11634 239 FLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV 317 (629)
T ss_pred HHHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEE
Confidence 88754 457899999999999999999985 7899999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHHhccCC-c
Q 011060 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH-P 238 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~-~ 238 (494)
||||+|.++++|+||+|||||+|+.|.+++|+++.|...++.|++.++..++++.+|..+++.+.....+...+.... .
T Consensus 318 I~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 397 (629)
T PRK11634 318 VNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLES 397 (629)
T ss_pred EEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceecCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999888888888777765433 3
Q ss_pred cchhhhHHHHHHHHhh-----hCHHHHHHHHHHHcCCCCC------C-----C---Ccc-----------------c--c
Q 011060 239 ESVEFFTPTAQRLIEE-----KGTDALAAALAQLSGFSRP------P-----S---SRS-----------------L--I 280 (494)
Q Consensus 239 ~~~~~~~~~~~~l~~~-----~~~~~l~~al~~l~~~~~~------~-----~---~r~-----------------l--~ 280 (494)
+.++.|...++++++. .+++.++++|+.+..-..+ + . .+. . .
T Consensus 398 ~~~~~~~~~~~~l~~~~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (629)
T PRK11634 398 SDLDQYRALLAKIQPTAEGEELDLETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477 (629)
T ss_pred hhHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccc
Confidence 4577788888888864 6789999999998632211 0 0 000 0 0
Q ss_pred c---CCCCceEEEeecCcccccCCCChhHHHHHhhhhcCCCcCccccEEEeecCceeeEEeecCHHHHHHHHhhcCC
Q 011060 281 N---HEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 354 (494)
Q Consensus 281 ~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~i~~~~~~~gs~fdvp~~~a~~~~~~~~~ 354 (494)
. ...+|++++++.|+ ++++.|++|+++|++..++...+||+|+|+++| ++||||++.+++++..+..
T Consensus 478 ~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~~----s~v~~~~~~~~~~~~~~~~ 547 (629)
T PRK11634 478 RERRDVGDMQLYRIEVGR---DDGVEVRHIVGAIANEGDISSRYIGNIKLFASH----STIELPKGMPGEVLQHFTR 547 (629)
T ss_pred cccccCCCCEEEEEeccc---ccCCCHHHHHHHHHhhcCCChhhCCcEEEeCCc----eEEEcChhhHHHHHHHhcc
Confidence 0 12268999999999 899999999999999999999999999999998 6999999999999987654
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-44 Score=365.08 Aligned_cols=206 Identities=45% Similarity=0.725 Sum_probs=190.9
Q ss_pred CCcCCHHHHHHHHHHhC-CCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHH
Q 011060 1 MLAVGFEEDVELILENL-PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILS 79 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~-~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 79 (494)
||||||+++|+.|+.++ ++.+|+|++|||+|.||+.++..||.+|..+.+..........++.+....+++..|...|.
T Consensus 251 MldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~ 330 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLG 330 (519)
T ss_pred hhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHH
Confidence 99999999999999999 56679999999999999999999999999998875545566788889999999999999999
Q ss_pred HHHHHHc--cCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCc
Q 011060 80 DLITVYA--KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 156 (494)
Q Consensus 80 ~ll~~~~--~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v 156 (494)
.+|..+. +..|+||||+|++.|++|+..|.. .+.+..|||+++|.+|+.+++.|++|+..||||||||+||||||+|
T Consensus 331 ~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV 410 (519)
T KOG0331|consen 331 KLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDV 410 (519)
T ss_pred HHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccc
Confidence 9998884 567999999999999999999997 6999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHh
Q 011060 157 DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (494)
Q Consensus 157 ~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~ 206 (494)
++|||||+|.++++|+||+|||||+|++|.+++|++..+......+.+.+
T Consensus 411 ~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l 460 (519)
T KOG0331|consen 411 DLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVL 460 (519)
T ss_pred cEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998887776665544
No 3
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.9e-43 Score=321.38 Aligned_cols=213 Identities=35% Similarity=0.606 Sum_probs=198.9
Q ss_pred CCcCCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCcc-HHHHHH
Q 011060 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS-KRTILS 79 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~ 79 (494)
||+.||.+++-.|++++|+..|++++|||+|.++.+..++||.||+.+-+. ++..+.+.++++++.+..++ |.+.|.
T Consensus 181 mL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvk--rdeltlEgIKqf~v~ve~EewKfdtLc 258 (400)
T KOG0328|consen 181 MLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVK--RDELTLEGIKQFFVAVEKEEWKFDTLC 258 (400)
T ss_pred HHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEe--cCCCchhhhhhheeeechhhhhHhHHH
Confidence 789999999999999999999999999999999999999999999988553 45666778999999887665 999999
Q ss_pred HHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccE
Q 011060 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (494)
Q Consensus 80 ~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~ 158 (494)
+|.+.+.- .+++|||||++.++.|.+.++. .+.+..+||+|+|++|+++++.||.++.+|||+||+.+||||+|.|++
T Consensus 259 dLYd~LtI-tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVsl 337 (400)
T KOG0328|consen 259 DLYDTLTI-TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSL 337 (400)
T ss_pred HHhhhheh-heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEE
Confidence 99887743 7899999999999999999986 789999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccCCC
Q 011060 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (494)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (494)
|||||+|.+.+.|+||+||.||.|++|.++-|+...|.+.++.+|+++...+.++++.
T Consensus 338 viNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~n 395 (400)
T KOG0328|consen 338 VINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMN 395 (400)
T ss_pred EEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccch
Confidence 9999999999999999999999999999999999999999999999999998887655
No 4
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.4e-41 Score=334.90 Aligned_cols=271 Identities=34% Similarity=0.495 Sum_probs=223.2
Q ss_pred CCcCCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcC-CCcEEEeccccccccccceEEEEEEcCCccHHHHHH
Q 011060 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILS 79 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~-~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 79 (494)
+|||||++||+.|++.+|+++|++|||||+|++|+++++-.|+ +|..|+++......+.+.+++-|+.++...++.+|.
T Consensus 242 lLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~ 321 (543)
T KOG0342|consen 242 LLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLY 321 (543)
T ss_pred hhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHH
Confidence 5899999999999999999999999999999999999998886 589999988888888899999888888888888889
Q ss_pred HHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccE
Q 011060 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (494)
Q Consensus 80 ~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~ 158 (494)
.+|+.+....++||||+|...+..+++.|.. .++|..+||.++|..|..+..+|++.+.-|||||||+|||+|+|+|++
T Consensus 322 ~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~ 401 (543)
T KOG0342|consen 322 TFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDW 401 (543)
T ss_pred HHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceE
Confidence 9998876669999999999999999999985 789999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccCCCCh-HHHHHHHHHHHHHHhccCC
Q 011060 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVV-EDVLESSAEQVVATLNGVH 237 (494)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~l~~~~ 237 (494)
||+||+|.++++||||+|||||.|++|.+++|+.|.|..++++|+ .+++++.+.|.. .+.++...+.++..-....
T Consensus 402 VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK---~lpl~~~e~~~~~~~~v~~~~~~li~~~y~~~ 478 (543)
T KOG0342|consen 402 VVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK---KLPLEEFEFPPLKPEDVQSQLEKLISKNYSLK 478 (543)
T ss_pred EEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh---hCCCcccCCCCCCHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999999999999999999999999998 556666555543 3444455555544322222
Q ss_pred ccchhhhHHHHHHH-------HhhhCHHHHHHHHHHHcCCCCCCC
Q 011060 238 PESVEFFTPTAQRL-------IEEKGTDALAAALAQLSGFSRPPS 275 (494)
Q Consensus 238 ~~~~~~~~~~~~~l-------~~~~~~~~l~~al~~l~~~~~~~~ 275 (494)
....+.|..+..-+ ......-+|+ ++++.+|++.||.
T Consensus 479 ~aak~ay~syl~~y~s~slk~~~~~~~l~La-~~~~s~gf~~pp~ 522 (543)
T KOG0342|consen 479 EAAKEAYKSYLGAYNSHSLKDIFNVNLLELA-AVAKSFGFSVPPA 522 (543)
T ss_pred HHHHHHHHhhhhhccchhhhcccccchhhHH-HHHHHcCCCCCcc
Confidence 22222222222111 1111233556 8888888887653
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-41 Score=357.48 Aligned_cols=218 Identities=43% Similarity=0.735 Sum_probs=198.6
Q ss_pred CCcCCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCcc-HHHHHH
Q 011060 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS-KRTILS 79 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~ 79 (494)
||||||.++|+.|+..+|+++|+++||||||..+.++++.|+++|..|.+.......+...+.++++.+.... |..+|.
T Consensus 186 mLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~ 265 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLL 265 (513)
T ss_pred hhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999888764344446788999999998766 999999
Q ss_pred HHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccE
Q 011060 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (494)
Q Consensus 80 ~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~ 158 (494)
.+++... ..++||||+|+..|+.|+..|.. ++.+..|||+|+|++|.++++.|++|+.+||||||+++||||||+|++
T Consensus 266 ~ll~~~~-~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~ 344 (513)
T COG0513 266 KLLKDED-EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSH 344 (513)
T ss_pred HHHhcCC-CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccce
Confidence 9998763 35899999999999999999985 799999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChh-hHHHHHHHHHHhcCCcc-ccCCCChH
Q 011060 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFE-FVSPPVVE 219 (494)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~-e~~~~~~l~~~~~~~~~-~~~~p~~~ 219 (494)
|||||+|.++++|+||+|||||+|++|.+++|+.+. |...+..+++.+...++ ...+|...
T Consensus 345 VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~~~~~~~~~ 407 (513)
T COG0513 345 VINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDE 407 (513)
T ss_pred eEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccccccccCCcch
Confidence 999999999999999999999999999999999986 89999999999877765 44445433
No 6
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-41 Score=323.33 Aligned_cols=213 Identities=36% Similarity=0.591 Sum_probs=199.4
Q ss_pred CCcCCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHH
Q 011060 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (494)
+|||-|.++|..||+.+|.++|++|||||||+.|.++....+++|+.|.+. ....+.++++++|+.++...|...|..
T Consensus 216 lLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s--~ky~tv~~lkQ~ylfv~~k~K~~yLV~ 293 (476)
T KOG0330|consen 216 LLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVS--SKYQTVDHLKQTYLFVPGKDKDTYLVY 293 (476)
T ss_pred hhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEecc--chhcchHHhhhheEeccccccchhHHH
Confidence 589999999999999999999999999999999999999999999988764 456677889999999999999999999
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEE
Q 011060 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~V 159 (494)
|++.. .+..+||||+|...++.++-.|.. ++.+..|||+|+|+.|...++.|+++...||||||+++||+|||.|++|
T Consensus 294 ll~e~-~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~V 372 (476)
T KOG0330|consen 294 LLNEL-AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVV 372 (476)
T ss_pred HHHhh-cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEE
Confidence 99876 568999999999999999999986 8999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccCCC
Q 011060 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (494)
||||+|.+..+||||+|||+|+|++|.+|.|++..|...+++||..++.+....+++
T Consensus 373 VNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~ 429 (476)
T KOG0330|consen 373 VNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVD 429 (476)
T ss_pred EecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcc
Confidence 999999999999999999999999999999999999999999999999887654443
No 7
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.1e-40 Score=329.83 Aligned_cols=203 Identities=40% Similarity=0.640 Sum_probs=184.7
Q ss_pred CCcCCHHHHHHHHHHhCCC---C----------------------CcEEEEeecCChHHHHHHHHHcCCCcEEEeccccc
Q 011060 1 MLAVGFEEDVELILENLPP---K----------------------RQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQD 55 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~---~----------------------~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~ 55 (494)
|+||||.+|+..||.++|. . +|+++||||||+.+..|++.||.+|+.+.+- ..
T Consensus 408 miDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig--~~ 485 (673)
T KOG0333|consen 408 MIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIG--SA 485 (673)
T ss_pred hhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEec--cC
Confidence 8999999999999999973 1 7999999999999999999999999998874 34
Q ss_pred cccccceEEEEEEcCCccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhcc
Q 011060 56 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFR 134 (494)
Q Consensus 56 ~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~ 134 (494)
....+.+++.++.+....|...|..+|+.. ...++|||+|+++.|+.|++.|.+ ++.+..|||+-+|++|+.+++.|+
T Consensus 486 gk~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr 564 (673)
T KOG0333|consen 486 GKPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFR 564 (673)
T ss_pred CCCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHH
Confidence 455677888888888889999999988876 458999999999999999999996 899999999999999999999999
Q ss_pred CCcEEEEEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHh
Q 011060 135 QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (494)
Q Consensus 135 ~g~~~iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~ 206 (494)
++..+||||||+++||||||+|++|||||++.+.++|+||+|||||+|+.|++++|+++.+...+..|.+.+
T Consensus 565 ~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l 636 (673)
T KOG0333|consen 565 EGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQAL 636 (673)
T ss_pred hcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998866555554443
No 8
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.6e-38 Score=331.32 Aligned_cols=285 Identities=31% Similarity=0.507 Sum_probs=245.7
Q ss_pred CCcCCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHH
Q 011060 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (494)
||+|||.++++.|++.+|+.+|+++||||+|+.+..++..++.+|..+.+.... ....+.++++.++...|...|..
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~---~~~~i~~~~~~~~~~~k~~~l~~ 235 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH---DLPAIEQRFYEVSPDERLPALQR 235 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC---CCCCeeEEEEEeCcHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999888764321 23457778888887789999999
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEE
Q 011060 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~V 159 (494)
++... ...++||||+|++.++.+++.|.. .+.+..+||+|++.+|+.+++.|++|+++|||||+++++|||+|++++|
T Consensus 236 ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~V 314 (460)
T PRK11776 236 LLLHH-QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAV 314 (460)
T ss_pred HHHhc-CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeE
Confidence 88755 457899999999999999999985 7899999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHHhccCCcc
Q 011060 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~ 239 (494)
||||+|.++++|+||+|||||+|++|.+++|+.+.|...++.+++.++.++++.++|......
T Consensus 315 I~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~l~~~~~~~----------------- 377 (460)
T PRK11776 315 INYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNWEPLPSLSPLS----------------- 377 (460)
T ss_pred EEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCceecCCchhhcc-----------------
Confidence 999999999999999999999999999999999999999999999998888877666422100
Q ss_pred chhhhHHHHHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCceEEEeecCcccccCCCChhHHHHHhhhhcCCCc
Q 011060 240 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAA 319 (494)
Q Consensus 240 ~~~~~~~~~~~l~~~~~~~~l~~al~~l~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 319 (494)
..+ ....+.++.+..++ ...+.+.++++.+........
T Consensus 378 -------------------------------~~~--------~~~~~~~l~i~~~~---~~~~~~~~~~~~~~~~~~~~~ 415 (460)
T PRK11776 378 -------------------------------GVP--------LLPEMVTLCIDGGK---KDKLRPGDILGALTGDAGLDG 415 (460)
T ss_pred -------------------------------ccc--------CCCCeEEEEEeccc---ccCCCccchHHHhhcccCCCh
Confidence 000 01236777877776 566778899999988888888
Q ss_pred CccccEEEeecCceeeEEeecCHHHHHHHHhhc
Q 011060 320 DEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQ 352 (494)
Q Consensus 320 ~~ig~i~i~~~~~~~gs~fdvp~~~a~~~~~~~ 352 (494)
.++|.|++.+.+ ++++++.+.++.++...
T Consensus 416 ~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~ 444 (460)
T PRK11776 416 AQIGKINVTDFH----AYVAVERAVAKKALKKL 444 (460)
T ss_pred hhcCCccccccc----ceeecchhhHHHHHHHh
Confidence 889999998876 68999999888887653
No 9
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-38 Score=314.62 Aligned_cols=214 Identities=33% Similarity=0.495 Sum_probs=196.5
Q ss_pred CCcCCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHH
Q 011060 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (494)
||||||.+.|+.|+.++|+.+||+|||||....|.++++..++||..|.+.......++.+++++|+.++..+|+.+|..
T Consensus 227 ~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~s 306 (758)
T KOG0343|consen 227 MLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWS 306 (758)
T ss_pred HHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHH
Confidence 79999999999999999999999999999999999999999999999988766666788899999999999999999999
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc---cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCcc
Q 011060 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~ 157 (494)
+|..+ ...++|||+.|.++|..+++.+.+ ++++..|||.|+|..|..++++|-....-||+|||+++||||+|.|+
T Consensus 307 FI~sh-lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVd 385 (758)
T KOG0343|consen 307 FIKSH-LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVD 385 (758)
T ss_pred HHHhc-cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccc
Confidence 99887 458999999999999999999885 78999999999999999999999998999999999999999999999
Q ss_pred EEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhh-HHHHHHHHHHhcCCccccCCC
Q 011060 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVGCKFEFVSPP 216 (494)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e-~~~~~~l~~~~~~~~~~~~~p 216 (494)
+||++|.|.++++||||+|||+|....|.++++++|.| ..++..|++.. ++++.+.+.
T Consensus 386 wViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~-I~i~~i~i~ 444 (758)
T KOG0343|consen 386 WVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKK-IPIKEIKID 444 (758)
T ss_pred eEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcC-CCHHhhccC
Confidence 99999999999999999999999999999999999988 55667776654 666664433
No 10
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-38 Score=311.53 Aligned_cols=219 Identities=34% Similarity=0.511 Sum_probs=198.4
Q ss_pred CCcCCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHH
Q 011060 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (494)
+|||||.+++..|++.+|++++|-|||||+..++.++++..++||+.|.+.......++..+..+|+.++...|...|.+
T Consensus 169 LldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~ 248 (567)
T KOG0345|consen 169 LLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVH 248 (567)
T ss_pred HhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999988765555577889999999999999999999
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc---cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCcc
Q 011060 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~ 157 (494)
+|... ...++|||++|...++..+..|.. ...+..+||.|.+.+|.++++.|++-.-.+|+||||++||||||+|+
T Consensus 249 ~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD 327 (567)
T KOG0345|consen 249 LLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGID 327 (567)
T ss_pred HHhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCce
Confidence 99875 568999999999999999998874 57899999999999999999999998888999999999999999999
Q ss_pred EEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccCCCChHH
Q 011060 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED 220 (494)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~ 220 (494)
+||+||+|.+++.|+||+|||+|+|+.|.+++|+.+.|..++..+.-.-...++++..|....
T Consensus 328 ~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~e~~~~ 390 (567)
T KOG0345|consen 328 LVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDTEKASL 390 (567)
T ss_pred EEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhcccccch
Confidence 999999999999999999999999999999999999998888887655556666665555443
No 11
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-38 Score=306.68 Aligned_cols=204 Identities=36% Similarity=0.608 Sum_probs=187.6
Q ss_pred CCcCCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHH
Q 011060 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (494)
||||||..+|.+||-.+.+++|+++.|||.|+.|.+++..|+++|..+.+ +.-.-.....+++..+.....+|.+++..
T Consensus 379 MLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~v-GsLdL~a~~sVkQ~i~v~~d~~k~~~~~~ 457 (629)
T KOG0336|consen 379 MLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYV-GSLDLVAVKSVKQNIIVTTDSEKLEIVQF 457 (629)
T ss_pred hhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEe-cccceeeeeeeeeeEEecccHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999987754 33333345667787788888899999999
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHH-ccCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEE
Q 011060 81 LITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~V 159 (494)
+++.+.+..++||||..+..|+.|...|. +++.+..|||+-.|.+|+..++.|++|+++||||||+++||||+|+|+||
T Consensus 458 f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV 537 (629)
T KOG0336|consen 458 FVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHV 537 (629)
T ss_pred HHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhccee
Confidence 99999889999999999999999998887 58999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHH
Q 011060 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 205 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~ 205 (494)
+|||+|.+++.|+||+|||||+|++|+++.|++.++......|.+.
T Consensus 538 ~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~I 583 (629)
T KOG0336|consen 538 YNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQI 583 (629)
T ss_pred eccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999998877776544
No 12
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-37 Score=291.30 Aligned_cols=211 Identities=30% Similarity=0.542 Sum_probs=199.8
Q ss_pred CCcCCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHH
Q 011060 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (494)
||+.-|.+-|+.|+..+|+++|++|||||.|-.|+.+..++|++|..|.+- ++.+...+.+||..+.+.+|..-|..
T Consensus 239 lLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM---~eLtl~GvtQyYafV~e~qKvhCLnt 315 (459)
T KOG0326|consen 239 LLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM---EELTLKGVTQYYAFVEERQKVHCLNT 315 (459)
T ss_pred hhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehh---hhhhhcchhhheeeechhhhhhhHHH
Confidence 688899999999999999999999999999999999999999999999875 55677889999999999999999999
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEE
Q 011060 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~V 159 (494)
|+..+.- .++|||||+.+.+|.||+.+.+ +|.+..+|+.|-|++|.+++..|++|.++.|||||++.||||++.|++|
T Consensus 316 LfskLqI-NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvV 394 (459)
T KOG0326|consen 316 LFSKLQI-NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVV 394 (459)
T ss_pred HHHHhcc-cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEE
Confidence 9887743 7899999999999999999986 8999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccCC
Q 011060 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 215 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~ 215 (494)
||||+|.++++|+||+||.||.|..|.+|.|++-+|+..+..||+.++.+++.++.
T Consensus 395 INFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~ 450 (459)
T KOG0326|consen 395 INFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPS 450 (459)
T ss_pred EecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCC
Confidence 99999999999999999999999999999999999999999999999999987763
No 13
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-36 Score=288.17 Aligned_cols=217 Identities=31% Similarity=0.502 Sum_probs=192.8
Q ss_pred CCcCCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHH
Q 011060 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (494)
||+-.|-++|+.|++.+|+.+|++|||||+.+.+.++...-...+....+.......+.+.+.+.|+.++...|...|..
T Consensus 165 vL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~ 244 (442)
T KOG0340|consen 165 VLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVH 244 (442)
T ss_pred hhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHH
Confidence 68889999999999999999999999999999888776443333222222223455667888899999999999999999
Q ss_pred HHHHHcc--CCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCcc
Q 011060 81 LITVYAK--GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 81 ll~~~~~--~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~ 157 (494)
+|..+.. ...++||++|..+|+.|+..|.. .+.+..+|+.|+|.+|...+.+|+.+..+||||||||+||+|||.|+
T Consensus 245 ~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~ 324 (442)
T KOG0340|consen 245 LLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVE 324 (442)
T ss_pred HHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCcee
Confidence 9988755 67899999999999999999986 78999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccCCCC
Q 011060 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV 217 (494)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~ 217 (494)
+|||||+|.++.+|+||+|||+|+|+.|.++.++++.|...++.||..++.++.+.....
T Consensus 325 LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~~ 384 (442)
T KOG0340|consen 325 LVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKVQ 384 (442)
T ss_pred EEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccccc
Confidence 999999999999999999999999999999999999999999999999999988755443
No 14
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-36 Score=299.91 Aligned_cols=202 Identities=35% Similarity=0.573 Sum_probs=180.6
Q ss_pred CCcCCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcC---CccHHHH
Q 011060 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT---ATSKRTI 77 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~---~~~k~~~ 77 (494)
||+.||.++|.+|++.+|+++|++||||||..+|.+|++..|++|+.|-+.+ +..++..+.+.++... ...+..+
T Consensus 339 MLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~--~~~~a~~LtQEFiRIR~~re~dRea~ 416 (691)
T KOG0338|consen 339 MLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDP--NKDTAPKLTQEFIRIRPKREGDREAM 416 (691)
T ss_pred HHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCC--ccccchhhhHHHheeccccccccHHH
Confidence 8999999999999999999999999999999999999999999999987653 3444555555555433 2357777
Q ss_pred HHHHHHHHccCCeEEEEeCChHHHHHHHHHHH-ccCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCc
Q 011060 78 LSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 156 (494)
Q Consensus 78 l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v 156 (494)
|..|+.... ..++|||+.|++.|..+.-+|- -++.+..|||.|+|.+|.+.++.|++.+++||||||+++|||||+.|
T Consensus 417 l~~l~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV 495 (691)
T KOG0338|consen 417 LASLITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGV 495 (691)
T ss_pred HHHHHHHhc-ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccce
Confidence 778877653 5899999999999999988776 37899999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHH
Q 011060 157 DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 205 (494)
Q Consensus 157 ~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~ 205 (494)
..||||++|.+.+.|+||+|||+|+|+.|.+++|+...|+..++.+-+.
T Consensus 496 ~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 496 QTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred eEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999998766
No 15
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.2e-36 Score=291.27 Aligned_cols=192 Identities=32% Similarity=0.572 Sum_probs=163.6
Q ss_pred CCcCCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHH
Q 011060 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (494)
|+||||.+||..|+..+...+|++|||||||..|+.+++..+-.|++|.+- +. .....++.+..-.+..+.|...|.+
T Consensus 338 miDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVG-RA-GAAsldViQevEyVkqEaKiVylLe 415 (610)
T KOG0341|consen 338 MIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVG-RA-GAASLDVIQEVEYVKQEAKIVYLLE 415 (610)
T ss_pred HhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecc-cc-cccchhHHHHHHHHHhhhhhhhHHH
Confidence 899999999999999999999999999999999999999999999988763 21 1112222222222333455544444
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHH-ccCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEE
Q 011060 81 LITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~V 159 (494)
.|+. ...++||||..+.+++.++++|- ++..+..+||+-.|++|...++.|+.|+.+|||||||++.|+|+|++.||
T Consensus 416 CLQK--T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHV 493 (610)
T KOG0341|consen 416 CLQK--TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHV 493 (610)
T ss_pred Hhcc--CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhh
Confidence 4432 35799999999999999999987 78999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhH
Q 011060 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (494)
||||+|.+++.|+||+|||||.|++|.+.+|+..+..
T Consensus 494 INyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~ 530 (610)
T KOG0341|consen 494 INYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQE 530 (610)
T ss_pred ccCCChHHHHHHHHHhcccCCCCCcceeeeeecccch
Confidence 9999999999999999999999999999999987643
No 16
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.1e-34 Score=306.79 Aligned_cols=206 Identities=34% Similarity=0.579 Sum_probs=182.0
Q ss_pred CCcCCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcC-CCcEEEeccccccccccceEEEEEEcCCccHHHHHH
Q 011060 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILS 79 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~-~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 79 (494)
||++||.+++..|+..+++++|+++||||+|+++..+++.++. ++..+.+... .......+.+.+..+....|...|.
T Consensus 289 mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~-~l~~~~~i~q~~~~~~~~~k~~~L~ 367 (545)
T PTZ00110 289 MLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSL-DLTACHNIKQEVFVVEEHEKRGKLK 367 (545)
T ss_pred hhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCC-ccccCCCeeEEEEEEechhHHHHHH
Confidence 7899999999999999999999999999999999999999886 4666654321 2233456777777677778888888
Q ss_pred HHHHHHc-cCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCcc
Q 011060 80 DLITVYA-KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 80 ~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~ 157 (494)
.++..+. ...++||||+|++.|+.|+..|.. .+.+..+||+|++++|+.++++|++|+.+||||||++++|||||+|+
T Consensus 368 ~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~ 447 (545)
T PTZ00110 368 MLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVK 447 (545)
T ss_pred HHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCC
Confidence 8887664 567999999999999999999984 78999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhc
Q 011060 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (494)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~ 207 (494)
+|||||+|.++++|+||+|||||+|++|.+++|+++.+...++.|.+.+.
T Consensus 448 ~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~ 497 (545)
T PTZ00110 448 YVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLR 497 (545)
T ss_pred EEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877777766654
No 17
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7e-35 Score=280.67 Aligned_cols=211 Identities=34% Similarity=0.605 Sum_probs=197.5
Q ss_pred CCcCCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHH
Q 011060 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (494)
||..||.++|..|++++|++.|++++|||+|.|+..+.++|+.+|..|.+. ....+...++++|+.+....|+..|.+
T Consensus 181 mLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vk--k~~ltl~gikq~~i~v~k~~k~~~l~d 258 (397)
T KOG0327|consen 181 MLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVK--KDELTLEGIKQFYINVEKEEKLDTLCD 258 (397)
T ss_pred hhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEec--chhhhhhheeeeeeeccccccccHHHH
Confidence 789999999999999999999999999999999999999999999988765 344667889999999988889999988
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEE
Q 011060 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~V 159 (494)
+.+ .-.+.+|||||++.+..+...|.. .+.+.++|++|.+.+|+.+++.|+.|..+|||+|+.++||||+.++++|
T Consensus 259 l~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slv 335 (397)
T KOG0327|consen 259 LYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLV 335 (397)
T ss_pred HHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhccee
Confidence 887 347899999999999999999975 7899999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccCCC
Q 011060 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (494)
|||++|...++|+||+||+||.|++|.++.+++..+...++.+++++...+++++..
T Consensus 336 inydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~ 392 (397)
T KOG0327|consen 336 VNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSN 392 (397)
T ss_pred eeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccc
Confidence 999999999999999999999999999999999999999999999999999887643
No 18
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-34 Score=276.44 Aligned_cols=215 Identities=31% Similarity=0.497 Sum_probs=191.8
Q ss_pred CCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCC-ccHHHHHHHHH
Q 011060 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLI 82 (494)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll 82 (494)
.||.|+-..|...+|++.|+|+||||....+..++.+...++..+.+. .+......|.++|+.|+. .+|.++|..|.
T Consensus 248 qG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk--~eel~L~~IkQlyv~C~~~~~K~~~l~~ly 325 (477)
T KOG0332|consen 248 QGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILK--REELALDNIKQLYVLCACRDDKYQALVNLY 325 (477)
T ss_pred ccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeee--hhhccccchhhheeeccchhhHHHHHHHHH
Confidence 589999999999999999999999999999999999999999888775 345566788888887765 58999998877
Q ss_pred HHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEE
Q 011060 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (494)
Q Consensus 83 ~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~ 161 (494)
..+. -++.||||.|++.+..|+..|.. ++.|..|||+|.-++|..++++||.|+.+|||+|+|++||||++.|++|||
T Consensus 326 g~~t-igqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvN 404 (477)
T KOG0332|consen 326 GLLT-IGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVN 404 (477)
T ss_pred hhhh-hhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEe
Confidence 6553 37899999999999999999985 899999999999999999999999999999999999999999999999999
Q ss_pred eCCCC------CHhHHHHHhhccCcCCCCceEEEecChh-hHHHHHHHHHHhcCCccccCCCChHHH
Q 011060 162 YELPN------DPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFEFVSPPVVEDV 221 (494)
Q Consensus 162 ~~~P~------~~~~y~qr~GR~gR~g~~g~~i~l~~~~-e~~~~~~l~~~~~~~~~~~~~p~~~~~ 221 (494)
||+|. |.++|+||+|||||.|++|.++.|+... ....+..|+++++.+++.+.+...+|+
T Consensus 405 ydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E~ 471 (477)
T KOG0332|consen 405 YDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLDEL 471 (477)
T ss_pred cCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHHHH
Confidence 99995 7999999999999999999999998865 456788999999999888876555443
No 19
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=5.1e-34 Score=298.97 Aligned_cols=210 Identities=39% Similarity=0.611 Sum_probs=187.6
Q ss_pred CCcCCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHH
Q 011060 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (494)
||+++|..+++.|+..++..+|+++||||+++++..++.+++.+|..+.+.. .......+.+++..+....+..+|..
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~--~~~~~~~i~~~~~~~~~~~k~~~l~~ 238 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVAR--RNTASEQVTQHVHFVDKKRKRELLSQ 238 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEec--ccccccceeEEEEEcCHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999998877643 22334566777777777777777777
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEE
Q 011060 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~V 159 (494)
++... ...++||||+|+..++.|++.|.. .+.+..+||+|++++|.+++++|++|+++|||||+++++|||+|+|++|
T Consensus 239 l~~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~V 317 (456)
T PRK10590 239 MIGKG-NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV 317 (456)
T ss_pred HHHcC-CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEE
Confidence 77543 447899999999999999999985 7899999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCcccc
Q 011060 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV 213 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~ 213 (494)
|||++|.++++|+||+|||||+|..|.+++|+...|...++.+++.+..++++.
T Consensus 318 I~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~~~ 371 (456)
T PRK10590 318 VNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRI 371 (456)
T ss_pred EEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCccc
Confidence 999999999999999999999999999999999999999999999887776544
No 20
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5e-34 Score=296.79 Aligned_cols=211 Identities=34% Similarity=0.557 Sum_probs=187.0
Q ss_pred CCcCCHHHHHHHHHHhCCC--CCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHH
Q 011060 1 MLAVGFEEDVELILENLPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~--~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l 78 (494)
|+++||..+++.|++.+|. .+|+++||||++..+..++..++.+|..+.+.. .......+.+.++......|...|
T Consensus 169 l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~--~~~~~~~i~~~~~~~~~~~k~~~l 246 (423)
T PRK04837 169 MFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEP--EQKTGHRIKEELFYPSNEEKMRLL 246 (423)
T ss_pred HhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcC--CCcCCCceeEEEEeCCHHHHHHHH
Confidence 6899999999999999984 577899999999999999999999998877643 223345566666666666788888
Q ss_pred HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCcc
Q 011060 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 79 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~ 157 (494)
..+++.. ...++||||+|+..|+.+++.|.. ++.+..+||+|++++|.+++++|++|+++||||||+++||||+|+|+
T Consensus 247 ~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~ 325 (423)
T PRK04837 247 QTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVT 325 (423)
T ss_pred HHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccC
Confidence 8887654 457999999999999999999985 89999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccC
Q 011060 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (494)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (494)
+|||||+|.+.++|+||+|||||.|+.|.+++|+++.+...+..+++.+...++..+
T Consensus 326 ~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~~ 382 (423)
T PRK04837 326 HVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSK 382 (423)
T ss_pred EEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCcc
Confidence 999999999999999999999999999999999999999999999998887775443
No 21
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=289.87 Aligned_cols=202 Identities=41% Similarity=0.657 Sum_probs=176.5
Q ss_pred CCc-CCHHHHHHHHHHhCCC----CCcEEEEeecCChHHHHHHHHHcCC-CcEEEeccccccccccceEEEEEEcCCccH
Q 011060 1 MLA-VGFEEDVELILENLPP----KRQSMLFSATMPSWVKKLSRKYLDN-PLNIDLVGNQDEKLAEGIKLYAISTTATSK 74 (494)
Q Consensus 1 mL~-~GF~~~l~~Il~~~~~----~~q~il~SAT~~~~v~~~~~~~~~~-~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k 74 (494)
||| |||.++|++|+.++.. ++|++|||||.|..+..++..|+.+ ...+.+. .......++.+..+.+....|
T Consensus 238 MlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~--rvg~~~~ni~q~i~~V~~~~k 315 (482)
T KOG0335|consen 238 MLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVG--RVGSTSENITQKILFVNEMEK 315 (482)
T ss_pred hhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEe--eeccccccceeEeeeecchhh
Confidence 899 9999999999998853 7999999999999999999999886 4444432 334456778888888888888
Q ss_pred HHHHHHHHHHHc---cCC-----eEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc
Q 011060 75 RTILSDLITVYA---KGG-----KTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 75 ~~~l~~ll~~~~---~~~-----~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd 145 (494)
...|.+++.... ... +++|||+|++.++.|+..|.. .+++..+||+.+|.+|++.++.|++|++.+||||+
T Consensus 316 r~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~ 395 (482)
T KOG0335|consen 316 RSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATN 395 (482)
T ss_pred HHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEeh
Confidence 888888876543 233 899999999999999999985 89999999999999999999999999999999999
Q ss_pred cccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHH
Q 011060 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (494)
Q Consensus 146 ~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~ 204 (494)
|++||||||+|+||||||+|.+..+|+||+|||||+|..|.++.|+........+.|.+
T Consensus 396 VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~ 454 (482)
T KOG0335|consen 396 VAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVE 454 (482)
T ss_pred hhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999665554444433
No 22
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.9e-34 Score=303.05 Aligned_cols=209 Identities=34% Similarity=0.545 Sum_probs=185.0
Q ss_pred CCcCCHHHHHHHHHHhCCC--CCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHH
Q 011060 1 MLAVGFEEDVELILENLPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~--~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l 78 (494)
|+++||..+|+.|++.+|. .+|+++||||++..+..++..++.+|..+.+.. .......+.+.++......|...|
T Consensus 171 lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~--~~~~~~~i~q~~~~~~~~~k~~~L 248 (572)
T PRK04537 171 MFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVET--ETITAARVRQRIYFPADEEKQTLL 248 (572)
T ss_pred HhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecc--ccccccceeEEEEecCHHHHHHHH
Confidence 6889999999999999987 789999999999999999999999887665432 223345667777767667787777
Q ss_pred HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCcc
Q 011060 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 79 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~ 157 (494)
..++... ...++||||+|++.++.|++.|.+ .+.+..|||+|++.+|++++++|++++++||||||++++|||+|+|+
T Consensus 249 ~~ll~~~-~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~ 327 (572)
T PRK04537 249 LGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVK 327 (572)
T ss_pred HHHHhcc-cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCC
Confidence 7777543 457999999999999999999985 78999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccc
Q 011060 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 212 (494)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~ 212 (494)
+|||||+|.++++|+||+|||||.|++|.+++|+.+.+...+..+++.+..+++.
T Consensus 328 ~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~ 382 (572)
T PRK04537 328 YVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPV 382 (572)
T ss_pred EEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCc
Confidence 9999999999999999999999999999999999999988899998888766643
No 23
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.9e-32 Score=290.76 Aligned_cols=204 Identities=28% Similarity=0.458 Sum_probs=179.0
Q ss_pred CCcCCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHH
Q 011060 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (494)
||++||.+++..|+..++ ++|+++||||+|+++..++..++.++..+.+.. .......+.+..+.+....|...|.+
T Consensus 282 ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~--~~~~~~~v~q~~~~~~~~~k~~~l~~ 358 (518)
T PLN00206 282 MLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGN--PNRPNKAVKQLAIWVETKQKKQKLFD 358 (518)
T ss_pred HhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC--CCCCCcceeEEEEeccchhHHHHHHH
Confidence 789999999999999996 689999999999999999999998888776542 23344566777777777777777777
Q ss_pred HHHHHcc-CCeEEEEeCChHHHHHHHHHHHc--cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCcc
Q 011060 81 LITVYAK-GGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 81 ll~~~~~-~~~~iVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~ 157 (494)
++..... ..++||||+|+..++.++..|.. .+.+..+||+|++++|..++++|++|+++|||||++++||||+|+|+
T Consensus 359 ~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~ 438 (518)
T PLN00206 359 ILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVR 438 (518)
T ss_pred HHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCC
Confidence 7765432 35899999999999999999973 78899999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhc
Q 011060 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (494)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~ 207 (494)
+|||||+|.++++|+||+|||||.|..|.+++|+++.+...+..+.+.+.
T Consensus 439 ~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~ 488 (518)
T PLN00206 439 QVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLK 488 (518)
T ss_pred EEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988877777766654
No 24
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=4.5e-32 Score=283.23 Aligned_cols=209 Identities=31% Similarity=0.534 Sum_probs=183.5
Q ss_pred CCcCCHHHHHHHHHHhCCCCCcEEEEeecCCh-HHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcC-CccHHHHH
Q 011060 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPS-WVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-ATSKRTIL 78 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~il~SAT~~~-~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l 78 (494)
||++||..+++.|...++...|+++||||++. .+..+...++.+|..+.+... ......+.+++.... ...|..+|
T Consensus 159 ~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~i~~~~~~~~~~~~k~~~l 236 (434)
T PRK11192 159 MLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPS--RRERKKIHQWYYRADDLEHKTALL 236 (434)
T ss_pred HhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCC--cccccCceEEEEEeCCHHHHHHHH
Confidence 78999999999999999999999999999985 588888888888888776432 233455666666554 35678888
Q ss_pred HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCcc
Q 011060 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 79 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~ 157 (494)
..+++.. ...++||||+|++.++.++..|.. .+.+..+||+|++.+|..++++|++|+++||||||++++|||+|+|+
T Consensus 237 ~~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~ 315 (434)
T PRK11192 237 CHLLKQP-EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVS 315 (434)
T ss_pred HHHHhcC-CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCC
Confidence 8877642 457999999999999999999985 78999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccc
Q 011060 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 212 (494)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~ 212 (494)
+|||||+|.+.+.|+||+|||||+|..|.+++|++..|...+..+++++..+++.
T Consensus 316 ~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~~ 370 (434)
T PRK11192 316 HVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLKA 370 (434)
T ss_pred EEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999887766543
No 25
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-32 Score=265.82 Aligned_cols=206 Identities=26% Similarity=0.475 Sum_probs=187.8
Q ss_pred CCcCCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHH
Q 011060 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (494)
||..||.+|+..|.+.+|+..|.+|||||+.++|..+.+.++++|+.+.+.... ...+..+.||++.+.+.+|..++..
T Consensus 182 llsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~e-l~~~dqL~Qy~v~cse~DKflllya 260 (569)
T KOG0346|consen 182 LLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGE-LPNPDQLTQYQVKCSEEDKFLLLYA 260 (569)
T ss_pred hhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEecccc-CCCcccceEEEEEeccchhHHHHHH
Confidence 678999999999999999999999999999999999999999999998876433 3356789999999999999999999
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc--------------
Q 011060 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-------------- 145 (494)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd-------------- 145 (494)
+++.---.+++|||+||.+.+..|...|.. +++.++|.|.||...|..++++|..|.++||||||
T Consensus 261 llKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kg 340 (569)
T KOG0346|consen 261 LLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKG 340 (569)
T ss_pred HHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccc
Confidence 888765679999999999999999999987 79999999999999999999999999999999999
Q ss_pred ---------------------cccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHH
Q 011060 146 ---------------------VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (494)
Q Consensus 146 ---------------------~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~ 204 (494)
-++||||+..|..|||||+|.++.+|+||+|||+|++++|.++.|+.|.+..-...|++
T Consensus 341 k~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~ 420 (569)
T KOG0346|consen 341 KSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLES 420 (569)
T ss_pred cccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHH
Confidence 24699999999999999999999999999999999999999999999998875555555
Q ss_pred Hhc
Q 011060 205 DVG 207 (494)
Q Consensus 205 ~~~ 207 (494)
.+.
T Consensus 421 ~~~ 423 (569)
T KOG0346|consen 421 ILK 423 (569)
T ss_pred HHh
Confidence 543
No 26
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.1e-32 Score=267.25 Aligned_cols=200 Identities=35% Similarity=0.571 Sum_probs=174.0
Q ss_pred CCcCCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEE-EEEcCCccHHHHHH
Q 011060 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLY-AISTTATSKRTILS 79 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~-~~~~~~~~k~~~l~ 79 (494)
|++|||+.+|..|..++.+++|+|+||||++..|+.+++.+|.+|+.+.... .......|.+. +++.....|+..|.
T Consensus 382 mfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~--vgean~dITQ~V~V~~s~~~Kl~wl~ 459 (731)
T KOG0339|consen 382 MFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGE--VGEANEDITQTVSVCPSEEKKLNWLL 459 (731)
T ss_pred hhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEee--hhccccchhheeeeccCcHHHHHHHH
Confidence 8999999999999999999999999999999999999999999998775431 22223445444 44444556776665
Q ss_pred HHHHHHccCCeEEEEeCChHHHHHHHHHHH-ccCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccE
Q 011060 80 DLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (494)
Q Consensus 80 ~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~ 158 (494)
.-|..+...+++|||+..+..+++|+..|. +.|.+..+||+|.|.+|.+++.+|+.+...||||||+++||+|||++..
T Consensus 460 ~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikT 539 (731)
T KOG0339|consen 460 RHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKT 539 (731)
T ss_pred HHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccce
Confidence 555555567899999999999999999998 6899999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHH
Q 011060 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l 202 (494)
|||||+-.+++.|.||+|||||+|.+|++|+++++.+..+.-.|
T Consensus 540 VvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~L 583 (731)
T KOG0339|consen 540 VVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHL 583 (731)
T ss_pred eecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHH
Confidence 99999999999999999999999999999999999887644444
No 27
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.98 E-value=3.6e-31 Score=279.17 Aligned_cols=208 Identities=34% Similarity=0.582 Sum_probs=184.1
Q ss_pred CCcCCHHHHHHHHHHhCCC--CCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHH
Q 011060 1 MLAVGFEEDVELILENLPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~--~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l 78 (494)
|++++|..++..|++.++. ++|+++||||++..+..+++.++.+|..+.+... ......+.+.+..+...++..+|
T Consensus 249 l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~k~~~l 326 (475)
T PRK01297 249 MLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPE--NVASDTVEQHVYAVAGSDKYKLL 326 (475)
T ss_pred HHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccC--cCCCCcccEEEEEecchhHHHHH
Confidence 4688999999999999975 6799999999999999999999999987766432 23334555566666667788888
Q ss_pred HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCcc
Q 011060 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 79 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~ 157 (494)
..++... ...++||||++++.++.+++.|.+ .+.+..+||+|++++|.++++.|++|+++|||||+++++|||||+++
T Consensus 327 ~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~ 405 (475)
T PRK01297 327 YNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGIS 405 (475)
T ss_pred HHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCC
Confidence 8887643 446999999999999999999985 78999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCcc
Q 011060 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 211 (494)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~ 211 (494)
+||+|++|.++.+|+||+||+||.|+.|.+++|+.+.|...+..+++.++.+++
T Consensus 406 ~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~ 459 (475)
T PRK01297 406 HVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKIS 459 (475)
T ss_pred EEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999999999999999999999999987764
No 28
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=9e-32 Score=267.27 Aligned_cols=207 Identities=30% Similarity=0.484 Sum_probs=175.7
Q ss_pred CCcCCHHHHHHHHHHhC-------------CCCCcEEEEeecCChHHHHHHHHHcCCCcEEEecccc---c---------
Q 011060 1 MLAVGFEEDVELILENL-------------PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ---D--------- 55 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~-------------~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~---~--------- 55 (494)
+||+||.+||+.|++.+ |+..|.+|+||||.+.|.+++...++||+.|.+.... .
T Consensus 299 lleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev 378 (708)
T KOG0348|consen 299 LLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEV 378 (708)
T ss_pred HHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhc
Confidence 58999999999999886 3357999999999999999999999999988721100 0
Q ss_pred -----------cccccceEEEEEEcCCccHHHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHcc----------
Q 011060 56 -----------EKLAEGIKLYAISTTATSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI---------- 111 (494)
Q Consensus 56 -----------~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~~---------- 111 (494)
-.+++.+.+.|..++..-++..|..+|... ....++|||+.+.+.++.-+..|...
T Consensus 379 ~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~ 458 (708)
T KOG0348|consen 379 DDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSG 458 (708)
T ss_pred CCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccC
Confidence 113445667788888877777776666543 24569999999999999888777531
Q ss_pred -------------CcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhcc
Q 011060 112 -------------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178 (494)
Q Consensus 112 -------------~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~ 178 (494)
..+.-|||+|+|++|..+++.|+...-.||+||||++||||+|+|++||+||+|.++++|+||+|||
T Consensus 459 ~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRT 538 (708)
T KOG0348|consen 459 APDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRT 538 (708)
T ss_pred CcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhh
Confidence 2477899999999999999999998889999999999999999999999999999999999999999
Q ss_pred CcCCCCceEEEecChhhHHHHHHHHHHhc
Q 011060 179 GRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (494)
Q Consensus 179 gR~g~~g~~i~l~~~~e~~~~~~l~~~~~ 207 (494)
+|+|.+|.+++|+.|.|..+++.++.+..
T Consensus 539 ARaG~kG~alLfL~P~Eaey~~~l~~~~~ 567 (708)
T KOG0348|consen 539 ARAGEKGEALLFLLPSEAEYVNYLKKHHI 567 (708)
T ss_pred hhccCCCceEEEecccHHHHHHHHHhhcc
Confidence 99999999999999999999998877643
No 29
>PTZ00424 helicase 45; Provisional
Probab=99.97 E-value=1.9e-30 Score=268.48 Aligned_cols=213 Identities=33% Similarity=0.590 Sum_probs=184.3
Q ss_pred CCcCCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCC-ccHHHHHH
Q 011060 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILS 79 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~ 79 (494)
|++.+|...+.++++.++++.|++++|||+|+++..+...++.+|..+.+.. .......+.++++.... ..+...+.
T Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (401)
T PTZ00424 182 MLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKK--DELTLEGIRQFYVAVEKEEWKFDTLC 259 (401)
T ss_pred HHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCC--CCcccCCceEEEEecChHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999887765432 22234556666665543 34566666
Q ss_pred HHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccE
Q 011060 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (494)
Q Consensus 80 ~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~ 158 (494)
.+++.. ...++||||+|++.++.+++.|.. .+.+..+||+|++++|..++++|++|+++|||||+++++|||+|++++
T Consensus 260 ~~~~~~-~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~ 338 (401)
T PTZ00424 260 DLYETL-TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSL 338 (401)
T ss_pred HHHHhc-CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCE
Confidence 666543 347899999999999999999985 689999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccCCC
Q 011060 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (494)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (494)
||+|++|.+..+|+||+||+||.|+.|.|++|+++.+...++.+++.+...++..++.
T Consensus 339 VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~~ 396 (401)
T PTZ00424 339 VINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPME 396 (401)
T ss_pred EEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCcc
Confidence 9999999999999999999999999999999999999999999999998888776544
No 30
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.4e-31 Score=265.02 Aligned_cols=225 Identities=33% Similarity=0.514 Sum_probs=178.6
Q ss_pred CCcCCHHHHHHHHHHhCC-----CCCcEEEEeecCChH---------------------HHHHHHHH--cCCCcEEEecc
Q 011060 1 MLAVGFEEDVELILENLP-----PKRQSMLFSATMPSW---------------------VKKLSRKY--LDNPLNIDLVG 52 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~-----~~~q~il~SAT~~~~---------------------v~~~~~~~--~~~~~~v~~~~ 52 (494)
|++-|+.+++..||+.+. .++|++.||||+.-. ++.++++. ..+|..|++..
T Consensus 352 mvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~ 431 (731)
T KOG0347|consen 352 MVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTP 431 (731)
T ss_pred HhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecCc
Confidence 788999999999999886 468999999998421 22233322 23566666642
Q ss_pred ccccccccceEEEEEEcCCccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHh
Q 011060 53 NQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLN 131 (494)
Q Consensus 53 ~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~ 131 (494)
...+...+..-.+.|+..+|.-.|..+|..| ++++|||||+++.+..|+-+|.. .+....||+.|.|.+|.+.++
T Consensus 432 --q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry--PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLE 507 (731)
T KOG0347|consen 432 --QSATASTLTESLIECPPLEKDLYLYYFLTRY--PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLE 507 (731)
T ss_pred --chhHHHHHHHHhhcCCccccceeEEEEEeec--CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHH
Confidence 2233333333444455555554455555444 68999999999999999999986 789999999999999999999
Q ss_pred hccCCcEEEEEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCcc
Q 011060 132 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 211 (494)
Q Consensus 132 ~F~~g~~~iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~ 211 (494)
+|++....||||||||+||||||.|+|||||.+|.+.+.|+||+|||+|++..|..++|+.|.+...+++|.+.+..+.+
T Consensus 508 kF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~~d 587 (731)
T KOG0347|consen 508 KFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKKED 587 (731)
T ss_pred HHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888876665
Q ss_pred ccCCCChHHHHHHHHHHH
Q 011060 212 FVSPPVVEDVLESSAEQV 229 (494)
Q Consensus 212 ~~~~p~~~~~~~~~~~~~ 229 (494)
.-..|....++....+++
T Consensus 588 lpifPv~~~~m~~lkeRv 605 (731)
T KOG0347|consen 588 LPIFPVETDIMDALKERV 605 (731)
T ss_pred CCceeccHHHHHHHHHHH
Confidence 544565666665554443
No 31
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.7e-30 Score=275.99 Aligned_cols=204 Identities=36% Similarity=0.597 Sum_probs=188.2
Q ss_pred CCcCCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcC-CccHHHHHH
Q 011060 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-ATSKRTILS 79 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~ 79 (494)
|+||||.+++..|++.+++.+|+++||||+|..+..++.+.++.|+.|.+- -...+...+++.+..++ ...|+.-|.
T Consensus 527 mfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~--~~svV~k~V~q~v~V~~~e~eKf~kL~ 604 (997)
T KOG0334|consen 527 MFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVG--GRSVVCKEVTQVVRVCAIENEKFLKLL 604 (997)
T ss_pred hheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEc--cceeEeccceEEEEEecCchHHHHHHH
Confidence 789999999999999999999999999999999999999999988876543 34455667777776666 789999999
Q ss_pred HHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccE
Q 011060 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (494)
Q Consensus 80 ~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~ 158 (494)
.||..+..+.++||||.....|+.+...|.+ .+.+..|||+.+|.+|..+++.|+++.+.+||||++++||||++++.+
T Consensus 605 eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~L 684 (997)
T KOG0334|consen 605 ELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELIL 684 (997)
T ss_pred HHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceE
Confidence 9998887889999999999999999999986 799999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHh
Q 011060 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (494)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~ 206 (494)
|||||+|...++|+||+|||||+|++|.|++|+++.+..+.-.|.+.+
T Consensus 685 vvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 685 VVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred EEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH
Confidence 999999999999999999999999999999999998888888888877
No 32
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.97 E-value=8.3e-29 Score=271.40 Aligned_cols=239 Identities=20% Similarity=0.284 Sum_probs=176.4
Q ss_pred HHHHHHHHHH-------hCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcC--------
Q 011060 6 FEEDVELILE-------NLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-------- 70 (494)
Q Consensus 6 F~~~l~~Il~-------~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~-------- 70 (494)
|..++..+++ ..+.++|+|+||||+++..+ +++.++..+..+ +.. .........+..+..+
T Consensus 173 fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~--~~~~~~~~~~~~~~p~~~~~~~~~ 248 (742)
T TIGR03817 173 FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTE--DGSPRGARTVALWEPPLTELTGEN 248 (742)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECC--CCCCcCceEEEEecCCcccccccc
Confidence 6555555444 44678999999999998865 577787777543 221 1111222222222221
Q ss_pred --------CccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc---------cCcEEEEeCCCCHHHHHHHHhhc
Q 011060 71 --------ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS---------IIASEALHGDISQHQRERTLNGF 133 (494)
Q Consensus 71 --------~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~---------~~~~~~lhg~~~~~~R~~~~~~F 133 (494)
...+..++..+++ .+.++||||+|++.++.++..|.+ ...+..+||+|++++|.+++++|
T Consensus 249 ~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f 325 (742)
T TIGR03817 249 GAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERAL 325 (742)
T ss_pred ccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHH
Confidence 1123344444443 468999999999999999998764 25688999999999999999999
Q ss_pred cCCcEEEEEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecC--hhhHHHHHHHHHHhcCCcc
Q 011060 134 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT--SSQRRTVRSLERDVGCKFE 211 (494)
Q Consensus 134 ~~g~~~iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~--~~e~~~~~~l~~~~~~~~~ 211 (494)
++|++++|||||++++|||||+|++||||++|.+.++|+||+|||||.|+.|.+++++. +.|...++.+++.+..+++
T Consensus 326 ~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e 405 (742)
T TIGR03817 326 RDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVE 405 (742)
T ss_pred HcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999986 5677788888888888887
Q ss_pred cc-CCCChHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHH
Q 011060 212 FV-SPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLI 252 (494)
Q Consensus 212 ~~-~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 252 (494)
.. ..|....++..++..+...+ .+..++.+.|.+...+++
T Consensus 406 ~~~~~~~n~~il~~hl~~aa~e~-~l~~~~~~~~~~~~~~~~ 446 (742)
T TIGR03817 406 ATVFDPDNPYVLGPHLCCAAAEL-PLTEADLELFGPAAAEVL 446 (742)
T ss_pred cceeCCCcHHHHHHHHHHHHhcC-CCChHHHHhhchhHHHHH
Confidence 64 34666667777776666544 344444445543333333
No 33
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1.5e-29 Score=245.32 Aligned_cols=211 Identities=33% Similarity=0.489 Sum_probs=195.4
Q ss_pred CCcCCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHH
Q 011060 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (494)
+++|||.+++.+|+..+|..+|+++||||+|..+..+++.-+.+|..|.+. .+..+.+.+++.+..+...+|..+|..
T Consensus 176 lfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRld--vetkise~lk~~f~~~~~a~K~aaLl~ 253 (529)
T KOG0337|consen 176 LFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLD--VETKISELLKVRFFRVRKAEKEAALLS 253 (529)
T ss_pred HHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEee--hhhhcchhhhhheeeeccHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999988754 345667788888888999999999999
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEE
Q 011060 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~V 159 (494)
++...-.+.++||||.|+..|+.+...|.. ++.+..+++.|.+..|...+.+|+.++..+||.||+++||+|||-.+.|
T Consensus 254 il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnv 333 (529)
T KOG0337|consen 254 ILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNV 333 (529)
T ss_pred HHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccc
Confidence 998776678999999999999999999985 8999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCcccc
Q 011060 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV 213 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~ 213 (494)
||||+|.+...|+||+||+.|+|+.|.+|.++.+.+..++-.|...++..+...
T Consensus 334 inyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~~ 387 (529)
T KOG0337|consen 334 INYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIFA 387 (529)
T ss_pred ccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCceeec
Confidence 999999999999999999999999999999999999999999999988776554
No 34
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.96 E-value=1.5e-27 Score=261.08 Aligned_cols=200 Identities=19% Similarity=0.262 Sum_probs=155.3
Q ss_pred CCcCC--HHHHHHHH--HHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHH
Q 011060 1 MLAVG--FEEDVELI--LENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT 76 (494)
Q Consensus 1 mL~~G--F~~~l~~I--l~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~ 76 (494)
|++.| |+++...| +....++.|+++||||++..+.+.+.+.+.-...+.+... . ...++.+ .+.........
T Consensus 593 VSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~S-f--~RpNL~y-~Vv~k~kk~le 668 (1195)
T PLN03137 593 VSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQS-F--NRPNLWY-SVVPKTKKCLE 668 (1195)
T ss_pred hhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecc-c--CccceEE-EEeccchhHHH
Confidence 35666 88888763 5555568899999999999988866666543222222211 1 1223322 22222212234
Q ss_pred HHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCC
Q 011060 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN 155 (494)
Q Consensus 77 ~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~ 155 (494)
.|..++.....+..+||||+|++.|+.+++.|.. ++.+..|||+|++++|..++++|++++++|||||+++++|||+|+
T Consensus 669 ~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPD 748 (1195)
T PLN03137 669 DIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPD 748 (1195)
T ss_pred HHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccC
Confidence 4445554333356899999999999999999985 899999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHH
Q 011060 156 VDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (494)
Q Consensus 156 v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~ 204 (494)
|++||||++|.+++.|+||+|||||.|.++.|++||+..|...++.+..
T Consensus 749 VR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 749 VRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred CcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999988777766654
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.96 E-value=2.6e-28 Score=246.91 Aligned_cols=196 Identities=28% Similarity=0.502 Sum_probs=170.5
Q ss_pred CCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCc--------cHH
Q 011060 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT--------SKR 75 (494)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~--------~k~ 75 (494)
--|.++|..|+..+|..+|++.||||.|..+..+..+||++|..|.+... ......|++|++..+.. .|+
T Consensus 183 ~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~--d~~L~GikQyv~~~~s~nnsveemrlkl 260 (980)
T KOG4284|consen 183 ESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNAD--DVQLFGIKQYVVAKCSPNNSVEEMRLKL 260 (980)
T ss_pred hhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccC--CceeechhheeeeccCCcchHHHHHHHH
Confidence 45999999999999999999999999999999999999999999887532 33345677766654432 266
Q ss_pred HHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHH-ccCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCC
Q 011060 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (494)
Q Consensus 76 ~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip 154 (494)
+.|.++++.+ +-.++||||+....|+.++.+|. .++.|.++.|.|+|.+|..+++.+|+-..+|||+||+.+||||-+
T Consensus 261 q~L~~vf~~i-py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~ 339 (980)
T KOG4284|consen 261 QKLTHVFKSI-PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDAD 339 (980)
T ss_pred HHHHHHHhhC-chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCcc
Confidence 6677777665 45689999999999999999998 499999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhH-HHHHHH
Q 011060 155 NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR-RTVRSL 202 (494)
Q Consensus 155 ~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~-~~~~~l 202 (494)
.|++|||.|+|.|.++|.||+|||||.|..|.+++|+...+. ..+..+
T Consensus 340 ~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 340 NVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred ccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 999999999999999999999999999999999999876543 444444
No 36
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=6.1e-27 Score=246.31 Aligned_cols=196 Identities=24% Similarity=0.395 Sum_probs=152.7
Q ss_pred CcCC--HHHHHHHH---HHhCCCCCcEEEEeecCChHHHHHHHHHcC--CCcEEEeccccccccccceEEEEEEcCCccH
Q 011060 2 LAVG--FEEDVELI---LENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSK 74 (494)
Q Consensus 2 L~~G--F~~~l~~I---l~~~~~~~q~il~SAT~~~~v~~~~~~~~~--~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k 74 (494)
++.| |++++..| ...+ ++.|+++||||+++.+...+.+.+. +|..+... .. ..++. +.+.......
T Consensus 140 ~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s---~~--r~nl~-~~v~~~~~~~ 212 (470)
T TIGR00614 140 SQWGHDFRPDYKALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTS---FD--RPNLY-YEVRRKTPKI 212 (470)
T ss_pred CccccccHHHHHHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC---CC--CCCcE-EEEEeCCccH
Confidence 4445 77776654 3444 5789999999999988776655543 44443221 11 12222 2222222233
Q ss_pred HHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCC
Q 011060 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (494)
Q Consensus 75 ~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidi 153 (494)
...+..++....++..+||||+|++.++.+++.|.. ++.+..+|++|++++|.+++++|++|+++|||||+++++|||+
T Consensus 213 ~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~ 292 (470)
T TIGR00614 213 LEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINK 292 (470)
T ss_pred HHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCc
Confidence 444444444333556779999999999999999985 7999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHH
Q 011060 154 PNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (494)
Q Consensus 154 p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~ 204 (494)
|+|++||||++|.+++.|+||+|||||.|.++.|++|+++.+...++.+..
T Consensus 293 p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 293 PDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred ccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999877777654
No 37
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.95 E-value=6.9e-27 Score=250.83 Aligned_cols=232 Identities=16% Similarity=0.235 Sum_probs=167.5
Q ss_pred HHHHHHHHhCC-CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCC----------ccHHH
Q 011060 8 EDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA----------TSKRT 76 (494)
Q Consensus 8 ~~l~~Il~~~~-~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~----------~~k~~ 76 (494)
+.+..+++.++ ..+|+++||||+|.++..+ ++|+.+|..|.+.+ .+...++++++.... ..+..
T Consensus 308 DllL~llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g----rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~ 382 (675)
T PHA02653 308 DIIIAVARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG----GTLFPISEVYVKNKYNPKNKRAYIEEEKKN 382 (675)
T ss_pred hHHHHHHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC----CcCCCeEEEEeecCcccccchhhhHHHHHH
Confidence 45566666554 4469999999999988877 57999998887642 233556777664331 12333
Q ss_pred HHHHHHHHHc-cCCeEEEEeCChHHHHHHHHHHHc---cCcEEEEeCCCCHHHHHHHHhhc-cCCcEEEEEecccccccC
Q 011060 77 ILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGF-RQGKFTVLVATDVAARGL 151 (494)
Q Consensus 77 ~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~R~~~~~~F-~~g~~~iLVaTd~~~~Gi 151 (494)
++..+..... ..+++||||+++++++.+++.|.+ .+.+.+|||+|++. ++++++| ++++.+||||||+|+|||
T Consensus 383 ~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGI 460 (675)
T PHA02653 383 IVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSV 460 (675)
T ss_pred HHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccc
Confidence 3333333221 346899999999999999999985 48899999999985 4667777 789999999999999999
Q ss_pred CCCCccEEEEeC---CCC---------CHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccCCCChH
Q 011060 152 DIPNVDLIIHYE---LPN---------DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 219 (494)
Q Consensus 152 dip~v~~VI~~~---~P~---------~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~ 219 (494)
|||+|++||+++ .|. +.++|+||+|||||. ++|.|+.|+++.+... ..
T Consensus 461 DIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~p-------------------I~ 520 (675)
T PHA02653 461 TIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKP-------------------IK 520 (675)
T ss_pred cccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHH-------------------HH
Confidence 999999999998 565 889999999999999 8999999999876321 12
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCCCC
Q 011060 220 DVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSR 272 (494)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l~~~~~ 272 (494)
++....+..++..++.......+.+ +++.++++.+.+|+..|..+..
T Consensus 521 ri~~~~L~~~vL~lk~~g~~~~~~~------~ldpP~~~~l~~A~~~L~~lga 567 (675)
T PHA02653 521 RIDSEFLHNYILYAKYFNLTLPEDL------FVIPSNLDRLRKTEEYIDSFNI 567 (675)
T ss_pred HHhHHHHHHHHHHHHHcCCCCcccc------cCCCCCHHHHHHHHHHHHHcCC
Confidence 2222223444444444433222221 5777888888888888765443
No 38
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=1.3e-27 Score=241.60 Aligned_cols=202 Identities=29% Similarity=0.465 Sum_probs=174.2
Q ss_pred CcC-CHHHHHHHHHHhCC-CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEE-EEEcCCccHHHHH
Q 011060 2 LAV-GFEEDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLY-AISTTATSKRTIL 78 (494)
Q Consensus 2 L~~-GF~~~l~~Il~~~~-~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~-~~~~~~~~k~~~l 78 (494)
++. .|.+++..|++.+. ++..+-+||||+|..|++.++..+.++..|.+- ..+ .....+.|. ..+.....|+.++
T Consensus 301 fe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg-~~~-sa~~~V~QelvF~gse~~K~lA~ 378 (593)
T KOG0344|consen 301 FEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVG-LRN-SANETVDQELVFCGSEKGKLLAL 378 (593)
T ss_pred hChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEe-cch-hHhhhhhhhheeeecchhHHHHH
Confidence 344 79999999999875 567788999999999999999998888877553 222 223445443 3445566788888
Q ss_pred HHHHHHHccCCeEEEEeCChHHHHHHHHHHH--ccCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCc
Q 011060 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALT--SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 156 (494)
Q Consensus 79 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~--~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v 156 (494)
..++..- -..++|||+.+.+.+.+|++.|. ..+.+.++||+.++.+|++++++||.|+++|||||++++||||+.+|
T Consensus 379 rq~v~~g-~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gv 457 (593)
T KOG0344|consen 379 RQLVASG-FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGV 457 (593)
T ss_pred HHHHhcc-CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCc
Confidence 8888765 35799999999999999999994 57899999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHh
Q 011060 157 DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (494)
Q Consensus 157 ~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~ 206 (494)
++|||||+|.+..+|+||+||+||+|+.|.+|+||++.+..+++.++...
T Consensus 458 n~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~ 507 (593)
T KOG0344|consen 458 NLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVM 507 (593)
T ss_pred ceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHH
Confidence 99999999999999999999999999999999999999988888876654
No 39
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.95 E-value=3.5e-27 Score=258.75 Aligned_cols=250 Identities=18% Similarity=0.235 Sum_probs=178.8
Q ss_pred CCcCCHHH-HHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHH----
Q 011060 1 MLAVGFEE-DVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKR---- 75 (494)
Q Consensus 1 mL~~GF~~-~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~---- 75 (494)
||++.|.- -+.+|.+.++++.|+|+||||++... ..+|+.++..|.+.+. ...++++|+.....++.
T Consensus 126 ~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~---l~~~l~~~~vI~~~gr-----~~pVe~~y~~~~~~~~~~~~v 197 (819)
T TIGR01970 126 SLDADLGLALALDVQSSLREDLKILAMSATLDGER---LSSLLPDAPVVESEGR-----SFPVEIRYLPLRGDQRLEDAV 197 (819)
T ss_pred hhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHH---HHHHcCCCcEEEecCc-----ceeeeeEEeecchhhhHHHHH
Confidence 35555533 23456677888999999999998763 4678877776765432 12356677665444332
Q ss_pred -HHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccccccc
Q 011060 76 -TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 150 (494)
Q Consensus 76 -~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~G 150 (494)
..+..+++. ..+++|||++++.+++.+++.|.+ .+.+..|||+|++++|.++++.|++|+.+||||||++++|
T Consensus 198 ~~~l~~~l~~--~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErg 275 (819)
T TIGR01970 198 SRAVEHALAS--ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETS 275 (819)
T ss_pred HHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhc
Confidence 223333322 357899999999999999999985 5789999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEeCCCC------------------CHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccc
Q 011060 151 LDIPNVDLIIHYELPN------------------DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 212 (494)
Q Consensus 151 idip~v~~VI~~~~P~------------------~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~ 212 (494)
||||+|++|||+++|. +..+|+||+|||||. ++|.||.|+++.+... +..+.
T Consensus 276 ItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~---l~~~~------ 345 (819)
T TIGR01970 276 LTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQR---LPAQD------ 345 (819)
T ss_pred ccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHh---hhcCC------
Confidence 9999999999999874 345699999999999 7999999999876533 22221
Q ss_pred cCCCChHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccc
Q 011060 213 VSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLI 280 (494)
Q Consensus 213 ~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l~~~~~~~~~r~l~ 280 (494)
..|++...+..++..+......+...| .+++.+..+.+.+|+..|..+........++
T Consensus 346 -----~PEI~r~~L~~~~L~l~~~g~~~~~~~-----~~l~~P~~~~i~~a~~~L~~lgald~~~~lT 403 (819)
T TIGR01970 346 -----EPEILQADLSGLALELAQWGAKDPSDL-----RWLDAPPSVALAAARQLLQRLGALDAQGRLT 403 (819)
T ss_pred -----CcceeccCcHHHHHHHHHcCCCChhhC-----CCCCCcCHHHHHHHHHHHHHCCCCCCCCCcC
Confidence 223334444445555554433333333 4567778888888888886555544333444
No 40
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.94 E-value=1.4e-26 Score=254.62 Aligned_cols=240 Identities=18% Similarity=0.231 Sum_probs=178.7
Q ss_pred HHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHH-----HHHHHHHHH
Q 011060 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-----ILSDLITVY 85 (494)
Q Consensus 11 ~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~-----~l~~ll~~~ 85 (494)
.++++.++++.|+|+||||++.+ ...+|+.++..|.+.+. ...++++|+..+...+.. ++..++.
T Consensus 140 ~~i~~~lr~~lqlilmSATl~~~---~l~~~~~~~~~I~~~gr-----~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~-- 209 (812)
T PRK11664 140 LDVQQGLRDDLKLLIMSATLDND---RLQQLLPDAPVIVSEGR-----SFPVERRYQPLPAHQRFDEAVARATAELLR-- 209 (812)
T ss_pred HHHHHhCCccceEEEEecCCCHH---HHHHhcCCCCEEEecCc-----cccceEEeccCchhhhHHHHHHHHHHHHHH--
Confidence 45677788899999999999875 23568877776655432 123666776665544442 2333332
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEE
Q 011060 86 AKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (494)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~ 161 (494)
...+.+|||++++++++.+++.|.+ .+.+..+||+|++++|.++++.|++|+.+||||||++++|||||+|++|||
T Consensus 210 ~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID 289 (812)
T PRK11664 210 QESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVD 289 (812)
T ss_pred hCCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEE
Confidence 2358999999999999999999985 577899999999999999999999999999999999999999999999999
Q ss_pred eCCCC------------------CHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccCCCChHHHHH
Q 011060 162 YELPN------------------DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 223 (494)
Q Consensus 162 ~~~P~------------------~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~ 223 (494)
+++|. |.++|+||+|||||. .+|.||.|+++.+... + ..-...||+.
T Consensus 290 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~~---l-----------~~~~~PEI~r 354 (812)
T PRK11664 290 SGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAER---A-----------AAQSEPEILH 354 (812)
T ss_pred CCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHhh---C-----------ccCCCCceec
Confidence 88764 346899999999999 6999999999876422 1 1122345666
Q ss_pred HHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccc
Q 011060 224 SSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLI 280 (494)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l~~~~~~~~~r~l~ 280 (494)
..+..++..+......+...| .+++.+.++.+.+|+..|..+........++
T Consensus 355 ~dL~~~~L~l~~~g~~~~~~~-----~~ld~P~~~~~~~A~~~L~~lgald~~g~lT 406 (812)
T PRK11664 355 SDLSGLLLELLQWGCHDPAQL-----SWLDQPPAAALAAAKRLLQQLGALDGQGRLT 406 (812)
T ss_pred cchHHHHHHHHHcCCCCHHhC-----CCCCCCCHHHHHHHHHHHHHCCCCCCCCCcC
Confidence 666666666666544333333 4677888888988888886555444333443
No 41
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.94 E-value=5.5e-26 Score=245.43 Aligned_cols=189 Identities=20% Similarity=0.379 Sum_probs=147.2
Q ss_pred HHHHHHH---HHHhCCCCCcEEEEeecCChHHHHHHHHHc--CCCcEEEeccccccccccceEEEEEEcCCccHHHHHHH
Q 011060 6 FEEDVEL---ILENLPPKRQSMLFSATMPSWVKKLSRKYL--DNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 6 F~~~l~~---Il~~~~~~~q~il~SAT~~~~v~~~~~~~~--~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (494)
|++++.. +.+.+ ++.|+++||||+++.+...+...+ .+|... +.. .. ..++. +.......+...+..
T Consensus 158 fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~--~~--r~nl~--~~v~~~~~~~~~l~~ 229 (607)
T PRK11057 158 FRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISS--FD--RPNIR--YTLVEKFKPLDQLMR 229 (607)
T ss_pred ccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECC--CC--CCcce--eeeeeccchHHHHHH
Confidence 6666544 34444 478999999999988766444443 344322 211 11 12222 222222234444444
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEE
Q 011060 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~V 159 (494)
++... .+.++||||+|++.|+.+++.|.. ++.+..+|++|++++|.++++.|++++++|||||+++++|||+|+|++|
T Consensus 230 ~l~~~-~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~V 308 (607)
T PRK11057 230 YVQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFV 308 (607)
T ss_pred HHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEE
Confidence 44432 457999999999999999999985 7999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHH
Q 011060 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~ 203 (494)
|||++|.+.++|+||+|||||.|.++.|++|+++.+...++.+.
T Consensus 309 I~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred EEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999877776654
No 42
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.93 E-value=2.7e-25 Score=240.14 Aligned_cols=184 Identities=21% Similarity=0.275 Sum_probs=140.9
Q ss_pred CcCCHHHHHHHHHHhC--CCC---CcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHH
Q 011060 2 LAVGFEEDVELILENL--PPK---RQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT 76 (494)
Q Consensus 2 L~~GF~~~l~~Il~~~--~~~---~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~ 76 (494)
|+|||.++|+.|++.+ ++. +|+++||||+|.++.++++.++.++..+.+.. .......+.++ +.+....|..
T Consensus 182 Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~--~~l~a~ki~q~-v~v~~e~Kl~ 258 (844)
T TIGR02621 182 LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLK--KRLAAKKIVKL-VPPSDEKFLS 258 (844)
T ss_pred hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccc--ccccccceEEE-EecChHHHHH
Confidence 6899999999999975 443 69999999999999999888888887766542 23334455554 3333334443
Q ss_pred HHHH-HHHHH-ccCCeEEEEeCChHHHHHHHHHHHccCcEEEEeCCCCHHHHH-----HHHhhccC----Cc-------E
Q 011060 77 ILSD-LITVY-AKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRE-----RTLNGFRQ----GK-------F 138 (494)
Q Consensus 77 ~l~~-ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~-----~~~~~F~~----g~-------~ 138 (494)
.+.. +...+ ....++||||||++.++.+++.|.+.. ...|||+|++.+|+ +++++|++ ++ .
T Consensus 259 ~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g-~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~ 337 (844)
T TIGR02621 259 TMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEK-FELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGT 337 (844)
T ss_pred HHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcC-CeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccc
Confidence 3222 22222 245789999999999999999998532 28999999999999 88999987 44 6
Q ss_pred EEEEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCc-eEEEecC
Q 011060 139 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEG-TAILMFT 192 (494)
Q Consensus 139 ~iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g-~~i~l~~ 192 (494)
.|||||+++++||||+. ++||++..| .++|+||+||++|.|+.+ ..++++.
T Consensus 338 ~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~ 389 (844)
T TIGR02621 338 VYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVH 389 (844)
T ss_pred eEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEe
Confidence 89999999999999986 889987766 689999999999999753 4355553
No 43
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.92 E-value=3e-24 Score=232.22 Aligned_cols=189 Identities=23% Similarity=0.411 Sum_probs=151.1
Q ss_pred HHHHHHHH---HHhCCCCCcEEEEeecCChHHHHHHHHHcC--CCcEEEeccccccccccceEEEEEEcCCccHHHHHHH
Q 011060 6 FEEDVELI---LENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 6 F~~~l~~I---l~~~~~~~q~il~SAT~~~~v~~~~~~~~~--~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (494)
|++++..| ...+| +.+++++|||++..+...+..++. ++..+ ... . ...++ ++.......+...+.+
T Consensus 146 frp~y~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~--~~~-~--~r~nl--~~~v~~~~~~~~~l~~ 217 (591)
T TIGR01389 146 FRPEYQRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEF--ITS-F--DRPNL--RFSVVKKNNKQKFLLD 217 (591)
T ss_pred cHHHHHHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeE--ecC-C--CCCCc--EEEEEeCCCHHHHHHH
Confidence 77766554 44454 456999999999998887776765 33322 111 1 11222 2222233456666666
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEE
Q 011060 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~V 159 (494)
++... .+.++||||+|++.++.+++.|.. ++.+..+|++|++++|+.++++|++|+++|||||+++++|||+|+|++|
T Consensus 218 ~l~~~-~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~V 296 (591)
T TIGR01389 218 YLKKH-RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFV 296 (591)
T ss_pred HHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEE
Confidence 66544 357899999999999999999985 7899999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHH
Q 011060 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~ 203 (494)
|||++|.+.+.|+||+||+||.|..+.|++++++.+...++.+.
T Consensus 297 I~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 297 IHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred EEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887766654
No 44
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.92 E-value=1.2e-23 Score=239.55 Aligned_cols=253 Identities=22% Similarity=0.337 Sum_probs=168.8
Q ss_pred HHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcC--CCcEEEeccccccccccceEEEEEEcCCcc----------
Q 011060 6 FEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATS---------- 73 (494)
Q Consensus 6 F~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~--~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~---------- 73 (494)
|...|+.|...++.+.|+|++|||+++ .++++ +|+. ++..| +...... ...++.+ +......
T Consensus 145 Lel~LeRL~~l~~~~~QrIgLSATI~n-~eevA-~~L~g~~pv~I--v~~~~~r-~~~l~v~-vp~~d~~~~~~~~~~~~ 218 (1490)
T PRK09751 145 LALSLERLDALLHTSAQRIGLSATVRS-ASDVA-AFLGGDRPVTV--VNPPAMR-HPQIRIV-VPVANMDDVSSVASGTG 218 (1490)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEeeCCC-HHHHH-HHhcCCCCEEE--ECCCCCc-ccceEEE-EecCchhhccccccccc
Confidence 456777888888888999999999987 45555 4554 24433 2111111 1122221 2111100
Q ss_pred -----------HHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHccC------------------------------
Q 011060 74 -----------KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII------------------------------ 112 (494)
Q Consensus 74 -----------k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~------------------------------ 112 (494)
...+...++..+....++||||||++.|+.++..|++.+
T Consensus 219 ~~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (1490)
T PRK09751 219 EDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQS 298 (1490)
T ss_pred cccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhcccc
Confidence 011223445444456899999999999999999887421
Q ss_pred ----cEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcC-CCCceE
Q 011060 113 ----ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA-GKEGTA 187 (494)
Q Consensus 113 ----~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~-g~~g~~ 187 (494)
.+..+||+|++++|..++++|++|++++||||+.+++||||++|++||||+.|.++.+|+||+||+||. +..+.+
T Consensus 299 ~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~g 378 (1490)
T PRK09751 299 SDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKG 378 (1490)
T ss_pred ccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEE
Confidence 256899999999999999999999999999999999999999999999999999999999999999995 334455
Q ss_pred EEecChhhHHHHH---HHHHHhcCCccccCCCCh-HHHHHHHHHHHHHHhccCCccchhhhHHHHHHH--HhhhCHHHHH
Q 011060 188 ILMFTSSQRRTVR---SLERDVGCKFEFVSPPVV-EDVLESSAEQVVATLNGVHPESVEFFTPTAQRL--IEEKGTDALA 261 (494)
Q Consensus 188 i~l~~~~e~~~~~---~l~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l--~~~~~~~~l~ 261 (494)
+++..... ..++ .++..+...++.+.+|.. -+++..++..++.. ..+.. +...+.+... ...++.+++.
T Consensus 379 li~p~~r~-dlle~~~~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~~-~~~~~---d~l~~~vrra~pf~~L~~~~f~ 453 (1490)
T PRK09751 379 LFFPRTRR-DLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAM-DALQV---DEWYSRVRRAAPWKDLPRRVFD 453 (1490)
T ss_pred EEEeCcHH-HHHhhHHHHHHHhcCCCCccCCCCChHHHHHHHHHHHHhc-CCCCH---HHHHHHhhccCCcccCCHHHHH
Confidence 54433322 2222 367777888888766644 46777666555542 22222 2111211111 2345667777
Q ss_pred HHHHHHcC
Q 011060 262 AALAQLSG 269 (494)
Q Consensus 262 ~al~~l~~ 269 (494)
+.|..|.+
T Consensus 454 ~vl~~L~~ 461 (1490)
T PRK09751 454 ATLDMLSG 461 (1490)
T ss_pred HHHHHHhc
Confidence 77777764
No 45
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=1.8e-24 Score=214.13 Aligned_cols=191 Identities=28% Similarity=0.433 Sum_probs=159.8
Q ss_pred CCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccc--cccccccceEEEEEEcCCccHHHHHHHHHHHHccCCeEEEE
Q 011060 17 LPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGN--QDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVF 94 (494)
Q Consensus 17 ~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~--~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF 94 (494)
+++..+-++||||+...-.++...-+..|..+.+... ..-.++..+.++++.+....|...+..+|... +-.++|+|
T Consensus 357 ~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~-k~~r~lcf 435 (620)
T KOG0350|consen 357 LYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN-KLNRTLCF 435 (620)
T ss_pred cCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh-hcceEEEE
Confidence 3455678899999977666676666777755443311 12334667788888888878888888888765 55799999
Q ss_pred eCChHHHHHHHHHHH-c----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEEeCCCCCHh
Q 011060 95 TQTKRDADEVSLALT-S----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 169 (494)
Q Consensus 95 ~~t~~~~~~l~~~l~-~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~~~~P~~~~ 169 (494)
+++.+.+..++..|. . .+.+..+.|.++.+.|.+.+++|..|+++||||||+++||||+.+|+.|||||+|.+..
T Consensus 436 ~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~k 515 (620)
T KOG0350|consen 436 VNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDK 515 (620)
T ss_pred ecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhh
Confidence 999999999999987 2 35677799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcC
Q 011060 170 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 208 (494)
Q Consensus 170 ~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~ 208 (494)
+|+||+|||+|+|+.|.||+++...+.+.+.++.+..+.
T Consensus 516 tyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 516 TYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred HHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 999999999999999999999999988877777666543
No 46
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.92 E-value=4.5e-24 Score=238.99 Aligned_cols=241 Identities=18% Similarity=0.327 Sum_probs=172.5
Q ss_pred CCcCCHHHH-HHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCcc---HHH
Q 011060 1 MLAVGFEED-VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS---KRT 76 (494)
Q Consensus 1 mL~~GF~~~-l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~---k~~ 76 (494)
||+++|... |..++... ++.|+|+||||++.+ .+++.| .+...|.+.+.. ..++++|....... +.+
T Consensus 199 sLn~DfLLg~Lk~lL~~r-pdlKvILmSATid~e--~fs~~F-~~apvI~V~Gr~-----~pVei~y~p~~~~~~~~~~d 269 (1294)
T PRK11131 199 SLNIDFILGYLKELLPRR-PDLKVIITSATIDPE--RFSRHF-NNAPIIEVSGRT-----YPVEVRYRPIVEEADDTERD 269 (1294)
T ss_pred ccccchHHHHHHHhhhcC-CCceEEEeeCCCCHH--HHHHHc-CCCCEEEEcCcc-----ccceEEEeecccccchhhHH
Confidence 688898753 44454433 478999999999753 555544 444456654321 23455665543221 233
Q ss_pred HHHHHHHH---H--ccCCeEEEEeCChHHHHHHHHHHHc-cC---cEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccc
Q 011060 77 ILSDLITV---Y--AKGGKTIVFTQTKRDADEVSLALTS-II---ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (494)
Q Consensus 77 ~l~~ll~~---~--~~~~~~iVF~~t~~~~~~l~~~l~~-~~---~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~ 147 (494)
.+..++.. + ...+.+|||++++.+++.+++.|.+ .+ .+.+|||+|++++|.++++. .+..+||||||++
T Consensus 270 ~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIA 347 (1294)
T PRK11131 270 QLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVA 347 (1294)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHH
Confidence 33333322 2 2457899999999999999999985 33 47899999999999999987 4788999999999
Q ss_pred cccCCCCCccEEEEeC---------------CC---CCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCC
Q 011060 148 ARGLDIPNVDLIIHYE---------------LP---NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 209 (494)
Q Consensus 148 ~~Gidip~v~~VI~~~---------------~P---~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~ 209 (494)
++|||||+|++||+++ +| .|.++|+||+|||||. .+|.||.||++.+... +..
T Consensus 348 EtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~---~~~----- 418 (1294)
T PRK11131 348 ETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLS---RPE----- 418 (1294)
T ss_pred hhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHh---hhc-----
Confidence 9999999999999986 33 4668999999999999 7999999999876432 111
Q ss_pred ccccCCCChHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCCCC
Q 011060 210 FEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSR 272 (494)
Q Consensus 210 ~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l~~~~~ 272 (494)
-+.+|++...+..++..++.....++..| .+++.+.++.|..++..|..+..
T Consensus 419 ------~~~PEIlR~~L~~viL~lk~lgl~di~~F-----~fldpP~~~~i~~al~~L~~LgA 470 (1294)
T PRK11131 419 ------FTDPEILRTNLASVILQMTALGLGDIAAF-----PFVEAPDKRNIQDGVRLLEELGA 470 (1294)
T ss_pred ------ccCCccccCCHHHHHHHHHHcCCCCccee-----eCCCCCCHHHHHHHHHHHHHCCC
Confidence 12345666666777777776655555555 46788888889888888764443
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.91 E-value=2.9e-23 Score=230.21 Aligned_cols=193 Identities=18% Similarity=0.288 Sum_probs=150.0
Q ss_pred HHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHHHHHH
Q 011060 6 FEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVY 85 (494)
Q Consensus 6 F~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~ 85 (494)
|.....++++.++.+.|+|+||||+++.+..++...+.++..|...+. . ...+++++.... ...+...++..+
T Consensus 585 fgv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~--~--R~~V~t~v~~~~---~~~i~~~i~~el 657 (926)
T TIGR00580 585 FGVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPE--D--RLPVRTFVMEYD---PELVREAIRREL 657 (926)
T ss_pred cchhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCC--C--ccceEEEEEecC---HHHHHHHHHHHH
Confidence 334556677888889999999999877777666666667766654321 1 123444443222 222233344445
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc---cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEEe
Q 011060 86 AKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 162 (494)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~~ 162 (494)
..+++++||||+++.++.+++.|.+ .+.+..+||+|++++|++++++|++|+++|||||+++++|||+|++++||++
T Consensus 658 ~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~ 737 (926)
T TIGR00580 658 LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIE 737 (926)
T ss_pred HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEe
Confidence 5678999999999999999999986 4789999999999999999999999999999999999999999999999999
Q ss_pred CCCC-CHhHHHHHhhccCcCCCCceEEEecChh------hHHHHHHHHHH
Q 011060 163 ELPN-DPETFVHRSGRTGRAGKEGTAILMFTSS------QRRTVRSLERD 205 (494)
Q Consensus 163 ~~P~-~~~~y~qr~GR~gR~g~~g~~i~l~~~~------e~~~~~~l~~~ 205 (494)
+.|. +..+|+||+||+||.++.|.||+++.+. ....++.|++.
T Consensus 738 ~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 738 RADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred cCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHh
Confidence 9875 6789999999999999999999998643 34455555543
No 48
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.91 E-value=4e-23 Score=232.14 Aligned_cols=242 Identities=17% Similarity=0.285 Sum_probs=172.7
Q ss_pred CCcCCHHHH-HHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCC------cc
Q 011060 1 MLAVGFEED-VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA------TS 73 (494)
Q Consensus 1 mL~~GF~~~-l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~------~~ 73 (494)
||+++|... +..|+... ++.|+|+||||++. ..+++. +.+...|.+.+.. ..++.+|..... .+
T Consensus 192 sL~~D~LL~lLk~il~~r-pdLKlIlmSATld~--~~fa~~-F~~apvI~V~Gr~-----~PVev~Y~~~~~~~~~~~~~ 262 (1283)
T TIGR01967 192 SLNIDFLLGYLKQLLPRR-PDLKIIITSATIDP--ERFSRH-FNNAPIIEVSGRT-----YPVEVRYRPLVEEQEDDDLD 262 (1283)
T ss_pred hccchhHHHHHHHHHhhC-CCCeEEEEeCCcCH--HHHHHH-hcCCCEEEECCCc-----ccceeEEecccccccchhhh
Confidence 578888765 67776655 47899999999974 455554 4444456554321 123444443321 12
Q ss_pred HHHHHHHHHHHH--ccCCeEEEEeCChHHHHHHHHHHHc----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccc
Q 011060 74 KRTILSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (494)
Q Consensus 74 k~~~l~~ll~~~--~~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~ 147 (494)
+.+.+..++..+ ...+.+|||++++.+++.+++.|.+ .+.+.+|||.|++++|.++++.+. ..+||||||++
T Consensus 263 ~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~--~rkIVLATNIA 340 (1283)
T TIGR01967 263 QLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHS--GRRIVLATNVA 340 (1283)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCC--CceEEEeccHH
Confidence 333333333322 2457999999999999999999985 245889999999999999987753 46899999999
Q ss_pred cccCCCCCccEEEEeCCC------------------CCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCC
Q 011060 148 ARGLDIPNVDLIIHYELP------------------NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 209 (494)
Q Consensus 148 ~~Gidip~v~~VI~~~~P------------------~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~ 209 (494)
++|||||+|++||+++++ .|.++|+||+|||||.+ +|.||.||+..+...+ ..
T Consensus 341 EtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~~---~~----- 411 (1283)
T TIGR01967 341 ETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNSR---PE----- 411 (1283)
T ss_pred HhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHhh---hh-----
Confidence 999999999999998843 36789999999999997 9999999998765321 11
Q ss_pred ccccCCCChHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCCCCC
Q 011060 210 FEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRP 273 (494)
Q Consensus 210 ~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l~~~~~~ 273 (494)
-+.+|++...+..++..+......++..| .+++.+..+.+..++..|..+...
T Consensus 412 ------~~~PEIlR~~L~~viL~l~~lg~~di~~f-----~fldpP~~~~i~~A~~~L~~LGAl 464 (1283)
T TIGR01967 412 ------FTDPEILRTNLASVILQMLALRLGDIAAF-----PFIEAPDPRAIRDGFRLLEELGAL 464 (1283)
T ss_pred ------ccCcccccccHHHHHHHHHhcCCCCcccc-----cCCCCCCHHHHHHHHHHHHHCCCC
Confidence 12345666667777777766554444444 467888888898888888655444
No 49
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.90 E-value=7.3e-23 Score=212.91 Aligned_cols=192 Identities=26% Similarity=0.387 Sum_probs=149.8
Q ss_pred HHHHHHHHH---HhCCCCCcEEEEeecCChHHHHHHHHHcC--CCcEEEeccccccccccceEEEEEEcCCccHHHHHHH
Q 011060 6 FEEDVELIL---ENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 6 F~~~l~~Il---~~~~~~~q~il~SAT~~~~v~~~~~~~~~--~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (494)
|+++...|- ..+| +.+++++|||.++.+..-+...|. ++..+...- ..+++........ ..+...+ -
T Consensus 150 FRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sf-----dRpNi~~~v~~~~-~~~~q~~-f 221 (590)
T COG0514 150 FRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSF-----DRPNLALKVVEKG-EPSDQLA-F 221 (590)
T ss_pred cCHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecC-----CCchhhhhhhhcc-cHHHHHH-H
Confidence 777766654 4455 889999999999998887766654 333332211 1222222222211 1222222 2
Q ss_pred HHH-HHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccE
Q 011060 81 LIT-VYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (494)
Q Consensus 81 ll~-~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~ 158 (494)
+.+ ........||||.|++.++.+++.|.. ++.+..||++|+.++|+.+.++|.+++++|+|||.++.+|||.|+|.+
T Consensus 222 i~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRf 301 (590)
T COG0514 222 LATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRF 301 (590)
T ss_pred HHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceE
Confidence 222 123456789999999999999999996 799999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHH
Q 011060 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 205 (494)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~ 205 (494)
|||||+|.++++|.|-+|||||.|.+..|++|+++.|....+.+...
T Consensus 302 ViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 302 VIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred EEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 99999999999999999999999999999999999998777766544
No 50
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.90 E-value=2.7e-22 Score=224.33 Aligned_cols=184 Identities=20% Similarity=0.292 Sum_probs=128.7
Q ss_pred HHHHccCCeEEEEeCChHHHHHHHHHHHcc-------CcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCC
Q 011060 82 ITVYAKGGKTIVFTQTKRDADEVSLALTSI-------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (494)
Q Consensus 82 l~~~~~~~~~iVF~~t~~~~~~l~~~l~~~-------~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip 154 (494)
.+.+....++||||||++.|+.++..|.+. ..+..+||+|++++|..++++|++|+++|||||+++++|||+|
T Consensus 278 ~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip 357 (876)
T PRK13767 278 HELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIG 357 (876)
T ss_pred HHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCC
Confidence 333445689999999999999999999752 5689999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCCCHhHHHHHhhccCcC-CCCceEEEecCh-hh-HHHHHHHHHHhcCCccccCCCC-hHHHHHHHHHHHH
Q 011060 155 NVDLIIHYELPNDPETFVHRSGRTGRA-GKEGTAILMFTS-SQ-RRTVRSLERDVGCKFEFVSPPV-VEDVLESSAEQVV 230 (494)
Q Consensus 155 ~v~~VI~~~~P~~~~~y~qr~GR~gR~-g~~g~~i~l~~~-~e-~~~~~~l~~~~~~~~~~~~~p~-~~~~~~~~~~~~~ 230 (494)
+|++||+|+.|.++.+|+||+||+||. +..+..++++.. .+ ......++......++.+.+|. ..+++..++..++
T Consensus 358 ~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie~~~~~~~~~dvl~q~i~~~~ 437 (876)
T PRK13767 358 YIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKKAREGKIDRVHIPKNPLDVLAQHIVGMA 437 (876)
T ss_pred CCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999986 443444444333 22 1222234444555666655553 3456655554443
Q ss_pred HHhccCCccchhhhHHHHHH--HHhhhCHHHHHHHHHHHcC
Q 011060 231 ATLNGVHPESVEFFTPTAQR--LIEEKGTDALAAALAQLSG 269 (494)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~--l~~~~~~~~l~~al~~l~~ 269 (494)
.. .....+++ .+.+.. ....+..+.+...|..|.+
T Consensus 438 ~~-~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~l~~l~~ 474 (876)
T PRK13767 438 IE-RPWDIEEA---YNIVRRAYPYRDLSDEDFESVLRYLAG 474 (876)
T ss_pred Hc-CCCCHHHH---HHHHhccCCcccCCHHHHHHHHHHHhc
Confidence 33 22222221 111111 1223456677766666653
No 51
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.90 E-value=5.2e-23 Score=209.73 Aligned_cols=179 Identities=24% Similarity=0.301 Sum_probs=130.5
Q ss_pred HHHHHHhCC-CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEE--EcCCccHHHHHHHHHHHHc
Q 011060 10 VELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAI--STTATSKRTILSDLITVYA 86 (494)
Q Consensus 10 l~~Il~~~~-~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~--~~~~~~k~~~l~~ll~~~~ 86 (494)
+..+++.++ .+.|+++||||+|+.+.++++.+...+....+.. ........+.+. ......+...+..+++...
T Consensus 144 l~~~l~~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 220 (358)
T TIGR01587 144 ILAVLEVLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDL---KEERRFERHRFIKIESDKVGEISSLERLLEFIK 220 (358)
T ss_pred HHHHHHHHHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCC---ccccccccccceeeccccccCHHHHHHHHHHhh
Confidence 555555554 4789999999999887777665543321111110 000001112221 2222356677777777666
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcc-C--cEEEEeCCCCHHHHHH----HHhhccCCcEEEEEecccccccCCCCCccEE
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTSI-I--ASEALHGDISQHQRER----TLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~-~--~~~~lhg~~~~~~R~~----~~~~F~~g~~~iLVaTd~~~~Gidip~v~~V 159 (494)
.+.++||||+|++.++.+++.|.+. . .+..+||+|++.+|.+ +++.|++++.+|||||+++++||||+ +++|
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~v 299 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVM 299 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEE
Confidence 7789999999999999999999853 3 4899999999999976 48999999999999999999999995 8899
Q ss_pred EEeCCCCCHhHHHHHhhccCcCCCC----ceEEEecChh
Q 011060 160 IHYELPNDPETFVHRSGRTGRAGKE----GTAILMFTSS 194 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~----g~~i~l~~~~ 194 (494)
|++..| +++|+||+||+||.|+. |.++++....
T Consensus 300 i~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 300 ITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred EEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 998776 78999999999998854 3666665543
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.90 E-value=1.7e-22 Score=228.69 Aligned_cols=189 Identities=16% Similarity=0.234 Sum_probs=147.9
Q ss_pred HHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHHHHHHccCCe
Q 011060 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGK 90 (494)
Q Consensus 11 ~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~ 90 (494)
.++++.++.++|+++||||+++.+..++...+.++..|..... . ...++++..... ...+...++..+...++
T Consensus 739 ~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~--~--r~~v~~~~~~~~---~~~~k~~il~el~r~gq 811 (1147)
T PRK10689 739 KERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA--R--RLAVKTFVREYD---SLVVREAILREILRGGQ 811 (1147)
T ss_pred HHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCC--C--CCCceEEEEecC---cHHHHHHHHHHHhcCCe
Confidence 4567888899999999999988888888888888887764321 1 123444433322 12223344444546789
Q ss_pred EEEEeCChHHHHHHHHHHHc---cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEEeCCC-C
Q 011060 91 TIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP-N 166 (494)
Q Consensus 91 ~iVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~~~~P-~ 166 (494)
++||||+++.++.+++.|.+ .+.+..+||+|++++|++++++|++|+++|||||+++++|||+|+|++||..+.. .
T Consensus 812 v~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~f 891 (1147)
T PRK10689 812 VYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHF 891 (1147)
T ss_pred EEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCC
Confidence 99999999999999999986 4679999999999999999999999999999999999999999999999955442 3
Q ss_pred CHhHHHHHhhccCcCCCCceEEEecCh------hhHHHHHHHHHHh
Q 011060 167 DPETFVHRSGRTGRAGKEGTAILMFTS------SQRRTVRSLERDV 206 (494)
Q Consensus 167 ~~~~y~qr~GR~gR~g~~g~~i~l~~~------~e~~~~~~l~~~~ 206 (494)
+...|+||+||+||.++.|.||+++.+ .....++.|++..
T Consensus 892 glaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~~ 937 (1147)
T PRK10689 892 GLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLE 937 (1147)
T ss_pred CHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHhc
Confidence 567899999999999999999999754 2345666666553
No 53
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=9.2e-24 Score=192.89 Aligned_cols=172 Identities=27% Similarity=0.557 Sum_probs=146.1
Q ss_pred CHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHHHHH
Q 011060 5 GFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 84 (494)
Q Consensus 5 GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~ 84 (494)
..+.|+++|++..|.+.|+++||||+++++..++++||.||..|-+ ......+...++++|+......|...|.+||+.
T Consensus 202 DMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~v-DdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~ 280 (387)
T KOG0329|consen 202 DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFV-DDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDV 280 (387)
T ss_pred HHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhc-cchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhh
Confidence 4678999999999999999999999999999999999999998854 344566778899999999999999999999988
Q ss_pred HccCCeEEEEeCChHHHHHHHHHHHccCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEEeCC
Q 011060 85 YAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 164 (494)
Q Consensus 85 ~~~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~~~~ 164 (494)
++ -.+++||+.+... | + | ..+ ||||++..||+||..|++|||||+
T Consensus 281 Le-FNQVvIFvKsv~R-------l-------------~----------f---~kr-~vat~lfgrgmdiervNi~~NYdm 325 (387)
T KOG0329|consen 281 LE-FNQVVIFVKSVQR-------L-------------S----------F---QKR-LVATDLFGRGMDIERVNIVFNYDM 325 (387)
T ss_pred hh-hcceeEeeehhhh-------h-------------h----------h---hhh-hHHhhhhccccCcccceeeeccCC
Confidence 74 4789999988664 0 0 2 122 899999999999999999999999
Q ss_pred CCCHhHHHHHhhccCcCCCCceEEEecChh-hHHHHHHHHHHhcCCccc
Q 011060 165 PNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFEF 212 (494)
Q Consensus 165 P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~-e~~~~~~l~~~~~~~~~~ 212 (494)
|.+.++|+||++||||.|.+|.+|+|++.. +...+..++......+.+
T Consensus 326 p~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~e 374 (387)
T KOG0329|consen 326 PEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKE 374 (387)
T ss_pred CCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhh
Confidence 999999999999999999999999999865 445666666665555444
No 54
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=1.2e-21 Score=207.63 Aligned_cols=169 Identities=18% Similarity=0.168 Sum_probs=135.2
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHHHHHH-ccCCeEEEEeCChHH
Q 011060 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVY-AKGGKTIVFTQTKRD 100 (494)
Q Consensus 22 q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~~iVF~~t~~~ 100 (494)
++.-||||++....++.+.|..++..|.... .. .....+.++.+...+|...|.+++... ..+.++||||+|++.
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~k---p~-~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~ 485 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNR---PS-QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAA 485 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCC---Cc-cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 4557999999988889988888876664321 11 122333445566667888888888664 235789999999999
Q ss_pred HHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCC---Ccc-----EEEEeCCCCCHhHH
Q 011060 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---NVD-----LIIHYELPNDPETF 171 (494)
Q Consensus 101 ~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip---~v~-----~VI~~~~P~~~~~y 171 (494)
++.+++.|.+ ++++..||+++.+.++. +..|+.+...|+||||+++||+||+ +|. |||+|++|.+...|
T Consensus 486 se~L~~~L~~~gi~~~~Lhg~~~~rE~~--ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y 563 (656)
T PRK12898 486 SERLSALLREAGLPHQVLNAKQDAEEAA--IVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARID 563 (656)
T ss_pred HHHHHHHHHHCCCCEEEeeCCcHHHHHH--HHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHH
Confidence 9999999985 89999999996555544 4455555557999999999999999 676 99999999999999
Q ss_pred HHHhhccCcCCCCceEEEecChhhH
Q 011060 172 VHRSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 172 ~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (494)
+||+|||||.|++|.+++|++..|.
T Consensus 564 ~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 564 RQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred HHhcccccCCCCCeEEEEEechhHH
Confidence 9999999999999999999998663
No 55
>PRK02362 ski2-like helicase; Provisional
Probab=99.88 E-value=2.6e-21 Score=214.10 Aligned_cols=190 Identities=24% Similarity=0.359 Sum_probs=134.4
Q ss_pred CcCCHHHHHHHHHHhC---CCCCcEEEEeecCChHHHHHHHHHcCCC--------cEEEeccccccccccceEEEEEEcC
Q 011060 2 LAVGFEEDVELILENL---PPKRQSMLFSATMPSWVKKLSRKYLDNP--------LNIDLVGNQDEKLAEGIKLYAISTT 70 (494)
Q Consensus 2 L~~GF~~~l~~Il~~~---~~~~q~il~SAT~~~~v~~~~~~~~~~~--------~~v~~~~~~~~~~~~~i~~~~~~~~ 70 (494)
++.++...++.++..+ +++.|+|++|||+++. .+++ .|+... +.+...............+..+ .
T Consensus 150 ~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la-~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~--~ 225 (737)
T PRK02362 150 DSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELA-DWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREV--E 225 (737)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHH-HHhCCCcccCCCCCCCCeeeEecCCeeccccccccC--C
Confidence 4567777888776554 5789999999999763 3344 344321 1110000000000000000111 1
Q ss_pred CccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcc-------------------------------------Cc
Q 011060 71 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-------------------------------------IA 113 (494)
Q Consensus 71 ~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~-------------------------------------~~ 113 (494)
...+...+..+++.+..+.++||||+|++.|+.++..|... ..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~g 305 (737)
T PRK02362 226 VPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKG 305 (737)
T ss_pred CccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhC
Confidence 11223344445555556789999999999999988877531 25
Q ss_pred EEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEE----eC-----CCCCHhHHHHHhhccCcCCC-
Q 011060 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE-----LPNDPETFVHRSGRTGRAGK- 183 (494)
Q Consensus 114 ~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~----~~-----~P~~~~~y~qr~GR~gR~g~- 183 (494)
+..+|++|++++|..+++.|++|.++|||||+++++|+|+|.+++||+ || .|.++.+|+||+|||||.|.
T Consensus 306 va~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d 385 (737)
T PRK02362 306 AAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLD 385 (737)
T ss_pred EEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCC
Confidence 788999999999999999999999999999999999999999999997 76 68999999999999999985
Q ss_pred -CceEEEecChhh
Q 011060 184 -EGTAILMFTSSQ 195 (494)
Q Consensus 184 -~g~~i~l~~~~e 195 (494)
.|.+++++...+
T Consensus 386 ~~G~~ii~~~~~~ 398 (737)
T PRK02362 386 PYGEAVLLAKSYD 398 (737)
T ss_pred CCceEEEEecCch
Confidence 499999987653
No 56
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.87 E-value=7.5e-21 Score=207.85 Aligned_cols=176 Identities=19% Similarity=0.292 Sum_probs=130.0
Q ss_pred HHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHHHHHHccCCe
Q 011060 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGK 90 (494)
Q Consensus 11 ~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~ 90 (494)
...+......+|+++||||+.+....+......+...++.. .. ....+...++ ....+..++..+.+....+.+
T Consensus 400 r~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~--p~--~r~~i~~~~~--~~~~~~~~~~~i~~~~~~g~q 473 (681)
T PRK10917 400 RLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDEL--PP--GRKPITTVVI--PDSRRDEVYERIREEIAKGRQ 473 (681)
T ss_pred HHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecC--CC--CCCCcEEEEe--CcccHHHHHHHHHHHHHcCCc
Confidence 34455556678999999998666554442111122222211 11 1122433333 233344445555555567789
Q ss_pred EEEEeCCh--------HHHHHHHHHHHcc---CcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEE
Q 011060 91 TIVFTQTK--------RDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 91 ~iVF~~t~--------~~~~~l~~~l~~~---~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~V 159 (494)
++|||++. ..++.+++.|.+. +.+..+||+|++++|++++++|++|+++|||||+++++|||+|++++|
T Consensus 474 ~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~V 553 (681)
T PRK10917 474 AYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVM 553 (681)
T ss_pred EEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEE
Confidence 99999964 3456677777753 579999999999999999999999999999999999999999999999
Q ss_pred EEeCCCC-CHhHHHHHhhccCcCCCCceEEEecC
Q 011060 160 IHYELPN-DPETFVHRSGRTGRAGKEGTAILMFT 192 (494)
Q Consensus 160 I~~~~P~-~~~~y~qr~GR~gR~g~~g~~i~l~~ 192 (494)
|+++.|. ..+.|+||+||+||.|.+|.|++++.
T Consensus 554 Ii~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 554 VIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred EEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 9999997 57888999999999999999999995
No 57
>PRK00254 ski2-like helicase; Provisional
Probab=99.87 E-value=1.5e-20 Score=207.47 Aligned_cols=221 Identities=23% Similarity=0.291 Sum_probs=145.7
Q ss_pred CCcCCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccce-EEEEEEcCCc--cH--H
Q 011060 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGI-KLYAISTTAT--SK--R 75 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i-~~~~~~~~~~--~k--~ 75 (494)
|++.++...++.|+..++.+.|+|++|||+++ ..+++. |+....... . .........+ .+.++..... .+ .
T Consensus 150 l~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~-wl~~~~~~~-~-~rpv~l~~~~~~~~~~~~~~~~~~~~~~ 225 (720)
T PRK00254 150 IGSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAE-WLNAELVVS-D-WRPVKLRKGVFYQGFLFWEDGKIERFPN 225 (720)
T ss_pred cCCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHH-HhCCccccC-C-CCCCcceeeEecCCeeeccCcchhcchH
Confidence 34567888999999999999999999999986 355554 554332111 0 0110100011 0111111111 11 1
Q ss_pred HHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc----------------------------------cCcEEEEeCCC
Q 011060 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS----------------------------------IIASEALHGDI 121 (494)
Q Consensus 76 ~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~----------------------------------~~~~~~lhg~~ 121 (494)
.....+.+.+..+.++||||+|++.|+.++..|.. ...+.++|++|
T Consensus 226 ~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl 305 (720)
T PRK00254 226 SWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGL 305 (720)
T ss_pred HHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCC
Confidence 11122223334568999999999999887766632 12488999999
Q ss_pred CHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEE-------eCCCC-CHhHHHHHhhccCcCC--CCceEEEec
Q 011060 122 SQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH-------YELPN-DPETFVHRSGRTGRAG--KEGTAILMF 191 (494)
Q Consensus 122 ~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~-------~~~P~-~~~~y~qr~GR~gR~g--~~g~~i~l~ 191 (494)
++++|..+++.|++|.++|||||+++++|+|+|.+++||. ++.|. +..+|+||+|||||.| ..|.+++++
T Consensus 306 ~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~ 385 (720)
T PRK00254 306 GRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVA 385 (720)
T ss_pred CHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEe
Confidence 9999999999999999999999999999999999999994 45544 5779999999999975 679999998
Q ss_pred ChhhHHHHHHHHHHhcCCcccc-CCCChHHHHHHHHH
Q 011060 192 TSSQRRTVRSLERDVGCKFEFV-SPPVVEDVLESSAE 227 (494)
Q Consensus 192 ~~~e~~~~~~l~~~~~~~~~~~-~~p~~~~~~~~~~~ 227 (494)
...+.. +.+++++..+++.+ .....++.+...+.
T Consensus 386 ~~~~~~--~~~~~~~~~~pe~l~s~l~~es~l~~~ll 420 (720)
T PRK00254 386 TTEEPS--KLMERYIFGKPEKLFSMLSNESAFRSQVL 420 (720)
T ss_pred cCcchH--HHHHHHHhCCchhhhccCCchHHHHHHHH
Confidence 765422 12445544444442 22233444444333
No 58
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.86 E-value=8.2e-21 Score=210.06 Aligned_cols=163 Identities=17% Similarity=0.243 Sum_probs=137.6
Q ss_pred cHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHH--ccCcEEEEeCCCCHHHHHHHHhhccCC--cEEEEEeccccc
Q 011060 73 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT--SIIASEALHGDISQHQRERTLNGFRQG--KFTVLVATDVAA 148 (494)
Q Consensus 73 ~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~--~~~~~~~lhg~~~~~~R~~~~~~F~~g--~~~iLVaTd~~~ 148 (494)
.|.+.|.++++.. ...|+||||+++..++.|++.|. .++.+..+||+|++.+|+++++.|+++ ..+|||||++++
T Consensus 479 ~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgs 557 (956)
T PRK04914 479 PRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGS 557 (956)
T ss_pred HHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhc
Confidence 4566666666654 36799999999999999999995 379999999999999999999999984 699999999999
Q ss_pred ccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcC--CccccCCCChHHHHHHHH
Q 011060 149 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC--KFEFVSPPVVEDVLESSA 226 (494)
Q Consensus 149 ~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~--~~~~~~~p~~~~~~~~~~ 226 (494)
+|+|++.+++|||||+|++++.|+||+||++|.|+++.+.+++...+....+.|.+.+.. .+-+..+|+..++.+...
T Consensus 558 eGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~~~v~~~~~ 637 (956)
T PRK04914 558 EGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTGRALYDEFG 637 (956)
T ss_pred cCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999887776665554455566665544 556678899999998888
Q ss_pred HHHHHHhccC
Q 011060 227 EQVVATLNGV 236 (494)
Q Consensus 227 ~~~~~~l~~~ 236 (494)
+.+...|...
T Consensus 638 ~~l~~~l~~~ 647 (956)
T PRK04914 638 DELIPYLASP 647 (956)
T ss_pred HHHHHHHhCC
Confidence 8887777554
No 59
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.86 E-value=2.6e-21 Score=188.50 Aligned_cols=190 Identities=31% Similarity=0.495 Sum_probs=151.0
Q ss_pred CCcCCHHHHHHHHHHhCCC------CCcEEEEeecCC-hHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCc-
Q 011060 1 MLAVGFEEDVELILENLPP------KRQSMLFSATMP-SWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT- 72 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~------~~q~il~SAT~~-~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~- 72 (494)
+|..|+-+-|..+..++|. ..|.++.|||+. -+|+.+.++.|.-|..|++.. +..+++.+.|+...+...
T Consensus 375 lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkg--eD~vpetvHhvv~lv~p~~ 452 (725)
T KOG0349|consen 375 LLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKG--EDLVPETVHHVVKLVCPSV 452 (725)
T ss_pred hhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEeccc--ccccchhhccceeecCCcc
Confidence 4667888889888888873 579999999985 467788888999999998863 334444444443332211
Q ss_pred c-HHHHH----------------------------HHH---------HHHHccCCeEEEEeCChHHHHHHHHHHHc----
Q 011060 73 S-KRTIL----------------------------SDL---------ITVYAKGGKTIVFTQTKRDADEVSLALTS---- 110 (494)
Q Consensus 73 ~-k~~~l----------------------------~~l---------l~~~~~~~~~iVF~~t~~~~~~l~~~l~~---- 110 (494)
+ ...-| ..| ++.+ .-.++||||.|+.+|+.|...+.+
T Consensus 453 d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h-~mdkaiifcrtk~dcDnLer~~~qkgg~ 531 (725)
T KOG0349|consen 453 DGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH-AMDKAIIFCRTKQDCDNLERMMNQKGGK 531 (725)
T ss_pred CccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh-ccCceEEEEeccccchHHHHHHHHcCCc
Confidence 0 00000 011 1111 236899999999999999999974
Q ss_pred cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEe
Q 011060 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (494)
Q Consensus 111 ~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l 190 (494)
.|.+.++|++..+.+|.+.++.|+....+.|||||+++|||||..+-+|||.-+|.+...|+||+||.||+.+-|.+|.+
T Consensus 532 ~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaisl 611 (725)
T KOG0349|consen 532 HYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISL 611 (725)
T ss_pred cceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cCh
Q 011060 191 FTS 193 (494)
Q Consensus 191 ~~~ 193 (494)
+..
T Consensus 612 vat 614 (725)
T KOG0349|consen 612 VAT 614 (725)
T ss_pred eec
Confidence 654
No 60
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.86 E-value=2.5e-20 Score=202.31 Aligned_cols=167 Identities=22% Similarity=0.280 Sum_probs=124.0
Q ss_pred CCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHHHHHHccCCeEEEEeCCh-
Q 011060 20 KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTK- 98 (494)
Q Consensus 20 ~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~- 98 (494)
.+|+++||||+.+....+.....-+...++... .....+..+.+ ....+..++..+.+.+..+.+++|||++.
T Consensus 386 ~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p----~~r~~i~~~~~--~~~~~~~~~~~i~~~l~~g~q~~v~~~~i~ 459 (630)
T TIGR00643 386 TPHVLVMSATPIPRTLALTVYGDLDTSIIDELP----PGRKPITTVLI--KHDEKDIVYEFIEEEIAKGRQAYVVYPLIE 459 (630)
T ss_pred CCCEEEEeCCCCcHHHHHHhcCCcceeeeccCC----CCCCceEEEEe--CcchHHHHHHHHHHHHHhCCcEEEEEcccc
Confidence 689999999976654443321111112222111 11122333332 22334455555555556678999999976
Q ss_pred -------HHHHHHHHHHHc---cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEEeCCCC-C
Q 011060 99 -------RDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN-D 167 (494)
Q Consensus 99 -------~~~~~l~~~l~~---~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~~~~P~-~ 167 (494)
..++.+++.|.+ .+.+..+||+|++++|++++++|++|+.+|||||+++++|||+|++++||+++.|. .
T Consensus 460 ~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~g 539 (630)
T TIGR00643 460 ESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFG 539 (630)
T ss_pred ccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCC
Confidence 456677777764 46799999999999999999999999999999999999999999999999999986 6
Q ss_pred HhHHHHHhhccCcCCCCceEEEecC
Q 011060 168 PETFVHRSGRTGRAGKEGTAILMFT 192 (494)
Q Consensus 168 ~~~y~qr~GR~gR~g~~g~~i~l~~ 192 (494)
...|+||+||+||.|++|.|++++.
T Consensus 540 ls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 540 LSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred HHHHHHHhhhcccCCCCcEEEEEEC
Confidence 7889999999999999999999983
No 61
>PRK01172 ski2-like helicase; Provisional
Probab=99.83 E-value=3.2e-19 Score=196.04 Aligned_cols=188 Identities=23% Similarity=0.316 Sum_probs=125.9
Q ss_pred CcCCHHHHHHHHHH---hCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceE---EEEEEcCCccHH
Q 011060 2 LAVGFEEDVELILE---NLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIK---LYAISTTATSKR 75 (494)
Q Consensus 2 L~~GF~~~l~~Il~---~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~---~~~~~~~~~~k~ 75 (494)
.|.++...++.++. .++++.|+|++|||+++ ..++++ |+..+. +.... ........+. ..+.........
T Consensus 148 ~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~-wl~~~~-~~~~~-r~vpl~~~i~~~~~~~~~~~~~~~~ 223 (674)
T PRK01172 148 GDEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQ-WLNASL-IKSNF-RPVPLKLGILYRKRLILDGYERSQV 223 (674)
T ss_pred cCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHH-HhCCCc-cCCCC-CCCCeEEEEEecCeeeecccccccc
Confidence 34556666666654 45678999999999976 345554 554222 11100 0000000010 011111111111
Q ss_pred HHHHHHHH-HHccCCeEEEEeCChHHHHHHHHHHHcc--------------------------CcEEEEeCCCCHHHHHH
Q 011060 76 TILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTSI--------------------------IASEALHGDISQHQRER 128 (494)
Q Consensus 76 ~~l~~ll~-~~~~~~~~iVF~~t~~~~~~l~~~l~~~--------------------------~~~~~lhg~~~~~~R~~ 128 (494)
. +..++. ....++++||||+|++.++.++..|.+. ..+..+|++|++++|..
T Consensus 224 ~-~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ 302 (674)
T PRK01172 224 D-INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRF 302 (674)
T ss_pred c-HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHH
Confidence 1 223333 2345689999999999999999888642 13778999999999999
Q ss_pred HHhhccCCcEEEEEecccccccCCCCCccEEEEeC---------CCCCHhHHHHHhhccCcCC--CCceEEEecChhh
Q 011060 129 TLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE---------LPNDPETFVHRSGRTGRAG--KEGTAILMFTSSQ 195 (494)
Q Consensus 129 ~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~~~---------~P~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e 195 (494)
+++.|++|.++|||||+++++|+|+|...+|| ++ .|.++.+|.||+|||||.| ..|.+++++...+
T Consensus 303 ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~ 379 (674)
T PRK01172 303 IEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA 379 (674)
T ss_pred HHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc
Confidence 99999999999999999999999999875555 33 3568899999999999998 4677888766543
No 62
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.82 E-value=1.2e-18 Score=189.10 Aligned_cols=139 Identities=27% Similarity=0.418 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCC
Q 011060 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (494)
Q Consensus 75 ~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidi 153 (494)
..++..|......+.++||||+|++.++.|++.|.. ++.+..+|+++++.+|..+++.|++|++.|||||+++++|+|+
T Consensus 433 ~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdl 512 (652)
T PRK05298 433 DDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDI 512 (652)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccc
Confidence 344444544455678999999999999999999985 7899999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCC-----CCCHhHHHHHhhccCcCCCCceEEEecCh---------hhHHHHHHHHHHhcCCccccC
Q 011060 154 PNVDLIIHYEL-----PNDPETFVHRSGRTGRAGKEGTAILMFTS---------SQRRTVRSLERDVGCKFEFVS 214 (494)
Q Consensus 154 p~v~~VI~~~~-----P~~~~~y~qr~GR~gR~g~~g~~i~l~~~---------~e~~~~~~l~~~~~~~~~~~~ 214 (494)
|++++||++|. |.+..+|+||+|||||. ..|.++++++. .+...++.++..++.+...++
T Consensus 513 p~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 586 (652)
T PRK05298 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITP 586 (652)
T ss_pred cCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCC
Confidence 99999999884 78999999999999996 78999999984 466777788887777766554
No 63
>PRK09401 reverse gyrase; Reviewed
Probab=99.82 E-value=9.7e-20 Score=206.87 Aligned_cols=163 Identities=24% Similarity=0.307 Sum_probs=132.0
Q ss_pred CCHH-HHHHHHHHhCCC------------------------CCcEEEEeecCChH-HHHHHHHHcCCCcEEEeccccccc
Q 011060 4 VGFE-EDVELILENLPP------------------------KRQSMLFSATMPSW-VKKLSRKYLDNPLNIDLVGNQDEK 57 (494)
Q Consensus 4 ~GF~-~~l~~Il~~~~~------------------------~~q~il~SAT~~~~-v~~~~~~~~~~~~~v~~~~~~~~~ 57 (494)
|||. ++|+.|++.+|. +.|+++||||+++. +.. .++.++..+++.. ...
T Consensus 227 lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~--~~~ 301 (1176)
T PRK09401 227 LGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGS--PVF 301 (1176)
T ss_pred CCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecC--ccc
Confidence 8995 789999988875 68999999999875 332 2334554455432 233
Q ss_pred cccceEEEEEEcCCccHHHHHHHHHHHHccCCeEEEEeCChHH---HHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhc
Q 011060 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRD---ADEVSLALTS-IIASEALHGDISQHQRERTLNGF 133 (494)
Q Consensus 58 ~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~---~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F 133 (494)
...++.+.++.+. ++...|..+++.+ +..+||||+|++. ++.+++.|.. ++.+..+||+| .+.+++|
T Consensus 302 ~~rnI~~~yi~~~--~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F 372 (1176)
T PRK09401 302 YLRNIVDSYIVDE--DSVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKF 372 (1176)
T ss_pred ccCCceEEEEEcc--cHHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHH
Confidence 4567888887665 6777778888765 3589999999877 9999999985 79999999999 2346999
Q ss_pred cCCcEEEEEe----cccccccCCCCC-ccEEEEeCCCC------CHhHHHHHhhccCc
Q 011060 134 RQGKFTVLVA----TDVAARGLDIPN-VDLIIHYELPN------DPETFVHRSGRTGR 180 (494)
Q Consensus 134 ~~g~~~iLVa----Td~~~~Gidip~-v~~VI~~~~P~------~~~~y~qr~GR~gR 180 (494)
++|+++|||| ||+++||||+|+ |++||||++|. ..+.|.||+||+-.
T Consensus 373 ~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 373 EEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred HCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 9999999999 699999999999 89999999998 77899999999864
No 64
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=5.6e-19 Score=191.22 Aligned_cols=169 Identities=18% Similarity=0.204 Sum_probs=131.0
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHHHHH-HccCCeEEEEeCChHH
Q 011060 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRD 100 (494)
Q Consensus 22 q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~-~~~~~~~iVF~~t~~~ 100 (494)
.+..||.|...+-.++.+.|--+ ++.+... .+....... -.+......|..+|..++.. +....++||||+|++.
T Consensus 365 kl~GmTGTa~t~~~e~~~~Y~l~--v~~IPt~-kp~~r~d~~-~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~ 440 (790)
T PRK09200 365 KLSGMTGTAKTEEKEFFEVYNME--VVQIPTN-RPIIRIDYP-DKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQ 440 (790)
T ss_pred HHhccCCCChHHHHHHHHHhCCc--EEECCCC-CCcccccCC-CeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 45678999866656665555322 2322211 111111111 12223445788777777654 3467899999999999
Q ss_pred HHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCC---CCcc-----EEEEeCCCCCHhHH
Q 011060 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI---PNVD-----LIIHYELPNDPETF 171 (494)
Q Consensus 101 ~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidi---p~v~-----~VI~~~~P~~~~~y 171 (494)
++.++..|.+ ++++..||+++.+.++..+..+++.+ .|+||||+++||+|| |+|. |||+|++|.+...|
T Consensus 441 se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y 518 (790)
T PRK09200 441 SETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVD 518 (790)
T ss_pred HHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHH
Confidence 9999999985 89999999999999999898888876 699999999999999 7998 99999999999999
Q ss_pred HHHhhccCcCCCCceEEEecChhhH
Q 011060 172 VHRSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 172 ~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (494)
+||+|||||.|++|.+++|++..|.
T Consensus 519 ~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 519 LQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred HHhhccccCCCCCeeEEEEEcchHH
Confidence 9999999999999999999998663
No 65
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.81 E-value=5.8e-19 Score=181.81 Aligned_cols=233 Identities=19% Similarity=0.314 Sum_probs=179.8
Q ss_pred HHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHH-HHHHHHHHHH--ccC
Q 011060 12 LILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKR-TILSDLITVY--AKG 88 (494)
Q Consensus 12 ~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~-~~l~~ll~~~--~~~ 88 (494)
.|++.- ++.++|+||||+..+ ..+.|+.+...+.+.++. ..++.+|...+..+-. +.+..+++.+ ++.
T Consensus 188 ki~~~R-~~LklIimSATlda~---kfS~yF~~a~i~~i~GR~-----fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~ 258 (674)
T KOG0922|consen 188 KILKKR-PDLKLIIMSATLDAE---KFSEYFNNAPILTIPGRT-----FPVEILYLKEPTADYVDAALITVIQIHLTEPP 258 (674)
T ss_pred HHHhcC-CCceEEEEeeeecHH---HHHHHhcCCceEeecCCC-----CceeEEeccCCchhhHHHHHHHHHHHHccCCC
Confidence 344433 467999999999654 566788887777775432 3356666665554433 3444444444 456
Q ss_pred CeEEEEeCChHHHHHHHHHHHcc---C------cEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEE
Q 011060 89 GKTIVFTQTKRDADEVSLALTSI---I------ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~~---~------~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~V 159 (494)
+.+|||.+..++++.+++.|.+. . -+.++||.|+.+++.++++.-..|..+|++||++++..|.||.|.+|
T Consensus 259 GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YV 338 (674)
T KOG0922|consen 259 GDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYV 338 (674)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEE
Confidence 79999999999999999999752 1 24689999999999999999999999999999999999999999999
Q ss_pred EEeC------------------CCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccCCCChHHH
Q 011060 160 IHYE------------------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221 (494)
Q Consensus 160 I~~~------------------~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~ 221 (494)
|+.+ .|.|..+-.||+|||||.+ +|.||-+|+.++. +.++..+.+|+
T Consensus 339 VDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~--------------~~~~~~~~PEI 403 (674)
T KOG0922|consen 339 VDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY--------------DKMPLQTVPEI 403 (674)
T ss_pred EcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH--------------hhcccCCCCce
Confidence 9543 3668999999999999985 9999999998774 22344455677
Q ss_pred HHHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCCCCC
Q 011060 222 LESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRP 273 (494)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l~~~~~~ 273 (494)
....+..++..|+.+...++-.| ++++.+.++.+.+||..|.-+...
T Consensus 404 ~R~~Ls~~vL~Lkalgi~d~l~F-----~f~d~P~~~~l~~AL~~L~~lgal 450 (674)
T KOG0922|consen 404 QRVNLSSAVLQLKALGINDPLRF-----PFIDPPPPEALEEALEELYSLGAL 450 (674)
T ss_pred eeechHHHHHHHHhcCCCCcccC-----CCCCCCChHHHHHHHHHHHhcCcc
Confidence 77778888888888777666666 678889999999999998755443
No 66
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.80 E-value=8.2e-19 Score=190.47 Aligned_cols=238 Identities=19% Similarity=0.284 Sum_probs=182.4
Q ss_pred HHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcC-Ccc-HHHHHHHHHHHH--
Q 011060 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-ATS-KRTILSDLITVY-- 85 (494)
Q Consensus 10 l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~-~~~-k~~~l~~ll~~~-- 85 (494)
+..++...+++.++|+||||+..+ -..+|+.++..+.+.+.. ..++.+|.... ... -.+.+...+..+
T Consensus 185 lk~~~~~rr~DLKiIimSATld~~---rfs~~f~~apvi~i~GR~-----fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~ 256 (845)
T COG1643 185 LKDLLARRRDDLKLIIMSATLDAE---RFSAYFGNAPVIEIEGRT-----YPVEIRYLPEAEADYILLDAIVAAVDIHLR 256 (845)
T ss_pred HHHHHhhcCCCceEEEEecccCHH---HHHHHcCCCCEEEecCCc-----cceEEEecCCCCcchhHHHHHHHHHHHhcc
Confidence 445677778789999999999665 455678887778775432 23455554333 223 344455555444
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEE
Q 011060 86 AKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (494)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI 160 (494)
...+.+|||.+..++++.+++.|.+ .+.+.+|||.|+.+++.++++.-..++.+|++||++|+.+|.||+|.+||
T Consensus 257 ~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VI 336 (845)
T COG1643 257 EGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVI 336 (845)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEe
Confidence 2457999999999999999999985 36689999999999999999999888888999999999999999999999
Q ss_pred EeC------------------CCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccCCCChHHHH
Q 011060 161 HYE------------------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 222 (494)
Q Consensus 161 ~~~------------------~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~ 222 (494)
+-+ .|.+..+..||+||+||.+ +|.||-+|+..+.. ..+.-+.+||+
T Consensus 337 DsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~--------------~~~~~t~PEIl 401 (845)
T COG1643 337 DSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFL--------------AFPEFTLPEIL 401 (845)
T ss_pred cCCcccccccccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHH--------------hcccCCChhhh
Confidence 544 2568899999999999985 99999999986642 12234567888
Q ss_pred HHHHHHHHHHhccCCcc-chhhhHHHHHHHHhhhCHHHHHHHHHHHcCCCCCCC
Q 011060 223 ESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPS 275 (494)
Q Consensus 223 ~~~~~~~~~~l~~~~~~-~~~~~~~~~~~l~~~~~~~~l~~al~~l~~~~~~~~ 275 (494)
...+..++..|+..... +...| .+++.++...+.+|+..|..+...+.
T Consensus 402 rtdLs~~vL~l~~~G~~~d~~~f-----~fld~P~~~~i~~A~~~L~~LGAld~ 450 (845)
T COG1643 402 RTDLSGLVLQLKSLGIGQDIAPF-----PFLDPPPEAAIQAALTLLQELGALDD 450 (845)
T ss_pred hcchHHHHHHHHhcCCCCCcccC-----ccCCCCChHHHHHHHHHHHHcCCcCC
Confidence 98899999999887663 55555 56788888899888888865544433
No 67
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.80 E-value=2.5e-18 Score=185.50 Aligned_cols=128 Identities=25% Similarity=0.432 Sum_probs=112.9
Q ss_pred HHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCC
Q 011060 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (494)
Q Consensus 76 ~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip 154 (494)
.++..+......+.++||||+|++.++.|++.|.+ ++.+..+|+++++.+|.++++.|++|++.|||||+++++|+|+|
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP 509 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLP 509 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeC
Confidence 44455545556678999999999999999999985 78999999999999999999999999999999999999999999
Q ss_pred CccEEEEeC-----CCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHH
Q 011060 155 NVDLIIHYE-----LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (494)
Q Consensus 155 ~v~~VI~~~-----~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~ 204 (494)
++++||++| .|.+..+|+||+|||||. ..|.++++++..+..+.+.|..
T Consensus 510 ~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 510 EVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred CCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 999999998 799999999999999998 6899999988766555554443
No 68
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.79 E-value=2.5e-18 Score=174.42 Aligned_cols=157 Identities=20% Similarity=0.261 Sum_probs=111.1
Q ss_pred HHHHhCCCCCcEEEEeecCChHHHHHHHHH--cCCCcEEEeccc--cc---------------cccccceEEEEEEcCCc
Q 011060 12 LILENLPPKRQSMLFSATMPSWVKKLSRKY--LDNPLNIDLVGN--QD---------------EKLAEGIKLYAISTTAT 72 (494)
Q Consensus 12 ~Il~~~~~~~q~il~SAT~~~~v~~~~~~~--~~~~~~v~~~~~--~~---------------~~~~~~i~~~~~~~~~~ 72 (494)
.+++..+...+++++|||+|+++.+..... +..+..+ +.+. .. ..+...+.+.+.. ...
T Consensus 173 ~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~-v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 250 (357)
T TIGR03158 173 QLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAP-IDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APD 250 (357)
T ss_pred HHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeee-ecCcccccCCChhhhccccccccceeccceEEEEEe-CCc
Confidence 344444446799999999999988777654 3433211 1111 00 0011245555544 333
Q ss_pred cHHHHHHHHHHHH------ccCCeEEEEeCChHHHHHHHHHHHc---cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEe
Q 011060 73 SKRTILSDLITVY------AKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVA 143 (494)
Q Consensus 73 ~k~~~l~~ll~~~------~~~~~~iVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVa 143 (494)
.+...+..+++.. .++.++||||+|++.++.++..|++ .+.+..+||.+++.+|+++. +..||||
T Consensus 251 ~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~------~~~iLVa 324 (357)
T TIGR03158 251 FKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM------QFDILLG 324 (357)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc------cCCEEEE
Confidence 4554444443332 2457999999999999999999985 35788999999999997654 6789999
Q ss_pred cccccccCCCCCccEEEEeCCCCCHhHHHHHhhccC
Q 011060 144 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179 (494)
Q Consensus 144 Td~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~g 179 (494)
||+++||||+|.+ +|| ++ |.+.++|+||+||||
T Consensus 325 Tdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 325 TSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred ecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9999999999987 566 55 899999999999987
No 69
>PRK14701 reverse gyrase; Provisional
Probab=99.79 E-value=6.3e-19 Score=204.40 Aligned_cols=187 Identities=18% Similarity=0.246 Sum_probs=142.3
Q ss_pred CCHHHHHHH----HHH----------------------hCCCCCc-EEEEeecCChHHHHHHHHHcCCCcEEEecccccc
Q 011060 4 VGFEEDVEL----ILE----------------------NLPPKRQ-SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDE 56 (494)
Q Consensus 4 ~GF~~~l~~----Il~----------------------~~~~~~q-~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~ 56 (494)
|||.+++.+ |++ .+|+.+| +++||||+++... ..++++++..+.+.. ..
T Consensus 226 lGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~~l~~~~l~f~v~~--~~ 301 (1638)
T PRK14701 226 LGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RVKLYRELLGFEVGS--GR 301 (1638)
T ss_pred CCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HHHHhhcCeEEEecC--CC
Confidence 799999975 543 3455666 5779999986411 123446666665532 23
Q ss_pred ccccceEEEEEEcCCccHHHHHHHHHHHHccCCeEEEEeCChHH---HHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhh
Q 011060 57 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRD---ADEVSLALTS-IIASEALHGDISQHQRERTLNG 132 (494)
Q Consensus 57 ~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~---~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~ 132 (494)
....++.+.++.+....+ ..|..+++.+ +..+||||+|++. |+++++.|.. ++.+..+|++ |..++++
T Consensus 302 ~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~ 373 (1638)
T PRK14701 302 SALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDL 373 (1638)
T ss_pred CCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHH
Confidence 455677788876654445 4566777654 4689999999886 4899999985 8999999995 8899999
Q ss_pred ccCCcEEEEEec----ccccccCCCCC-ccEEEEeCCCC---CHhHHHHHh-------------hccCcCCCCceEEEec
Q 011060 133 FRQGKFTVLVAT----DVAARGLDIPN-VDLIIHYELPN---DPETFVHRS-------------GRTGRAGKEGTAILMF 191 (494)
Q Consensus 133 F~~g~~~iLVaT----d~~~~Gidip~-v~~VI~~~~P~---~~~~y~qr~-------------GR~gR~g~~g~~i~l~ 191 (494)
|++|+++||||| ++++||||+|+ |.+|||||+|. +.+.|.|-. ||++|.|.+..+++.+
T Consensus 374 F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~ 453 (1638)
T PRK14701 374 FEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDV 453 (1638)
T ss_pred HHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHh
Confidence 999999999999 59999999999 99999999999 888776655 9999999888887666
Q ss_pred ChhhHHHHHHH
Q 011060 192 TSSQRRTVRSL 202 (494)
Q Consensus 192 ~~~e~~~~~~l 202 (494)
...+...++.+
T Consensus 454 ~~~~~~~~~~~ 464 (1638)
T PRK14701 454 FPEDVEFLRSI 464 (1638)
T ss_pred HHHHHHHHHHH
Confidence 66665555544
No 70
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.78 E-value=3.3e-18 Score=187.91 Aligned_cols=195 Identities=21% Similarity=0.317 Sum_probs=154.4
Q ss_pred HHHHHHHH---HHhCCCCCcEEEEeecCChHHHHHHHHHcC--CCcEEEeccccccccccceEEEEEEcCCccHHHHHHH
Q 011060 6 FEEDVELI---LENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 6 F~~~l~~I---l~~~~~~~q~il~SAT~~~~v~~~~~~~~~--~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (494)
|+++-.++ ....| ...+|.+|||....|.+-+-..|+ ++..+.- ....+++...+...........+..
T Consensus 404 FRp~Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~-----sfnR~NL~yeV~~k~~~~~~~~~~~ 477 (941)
T KOG0351|consen 404 FRPSYKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPELFKS-----SFNRPNLKYEVSPKTDKDALLDILE 477 (941)
T ss_pred ccHHHHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcceecc-----cCCCCCceEEEEeccCccchHHHHH
Confidence 66665553 33444 489999999998888876655554 5553321 1123344333332222344444455
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEE
Q 011060 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~V 159 (494)
.+..+.+...+||||.++.+|+.++..|.+ ++.+..||++|+..+|+.|.++|..++++|+|||=++..|||.|+|..|
T Consensus 478 ~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~V 557 (941)
T KOG0351|consen 478 ESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFV 557 (941)
T ss_pred HhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEE
Confidence 555566778999999999999999999996 6799999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHh
Q 011060 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~ 206 (494)
|||.+|.+.+.|.|-+|||||.|....|++|+...+...++.+...-
T Consensus 558 iH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 558 IHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred EECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999887777765543
No 71
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.78 E-value=4.6e-18 Score=182.54 Aligned_cols=167 Identities=19% Similarity=0.194 Sum_probs=128.8
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEE-EEEEcCCccHHHHHHHHHHH-HccCCeEEEEeCChH
Q 011060 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKR 99 (494)
Q Consensus 22 q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~-~~~~~~~iVF~~t~~ 99 (494)
++..||.|...+..++.+.|--+ ++.+. .+.+.....+ -.+......|..++...+.. +....++||||+|++
T Consensus 361 kl~GmTGTa~~~~~Ef~~iY~l~--v~~IP---t~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~ 435 (762)
T TIGR03714 361 KLSGMTGTGKVAEKEFIETYSLS--VVKIP---TNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVE 435 (762)
T ss_pred hhcccCCCChhHHHHHHHHhCCC--EEEcC---CCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHH
Confidence 45678888766666666555322 23222 1111111111 12334445677766666543 456789999999999
Q ss_pred HHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCC---------CccEEEEeCCCCCHh
Q 011060 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---------NVDLIIHYELPNDPE 169 (494)
Q Consensus 100 ~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip---------~v~~VI~~~~P~~~~ 169 (494)
.++.++..|.+ ++++..||+++.+.++..+.++++.+ .|+||||+++||+||+ ++.+||+|++|....
T Consensus 436 ~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~ri 513 (762)
T TIGR03714 436 MSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRV 513 (762)
T ss_pred HHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHH
Confidence 99999999985 89999999999999999998888877 6999999999999999 999999999999877
Q ss_pred HHHHHhhccCcCCCCceEEEecChhhH
Q 011060 170 TFVHRSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 170 ~y~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (494)
. +||+|||||.|++|.+++|++..|.
T Consensus 514 d-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 514 D-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred H-HHhhhcccCCCCceeEEEEEccchh
Confidence 7 9999999999999999999998664
No 72
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.78 E-value=1.3e-18 Score=177.55 Aligned_cols=252 Identities=17% Similarity=0.262 Sum_probs=190.4
Q ss_pred HHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHH-HHHHHHHH--ccC
Q 011060 12 LILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTI-LSDLITVY--AKG 88 (494)
Q Consensus 12 ~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~-l~~ll~~~--~~~ 88 (494)
.|.+.- ++..+|+.||||..+ -.+.|+.+...+.+.+.+ ..+..+|-..++.+.+++ +..+++.+ .+.
T Consensus 403 DIar~R-pdLKllIsSAT~DAe---kFS~fFDdapIF~iPGRR-----yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~ 473 (902)
T KOG0923|consen 403 DIARFR-PDLKLLISSATMDAE---KFSAFFDDAPIFRIPGRR-----YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPL 473 (902)
T ss_pred HHHhhC-CcceEEeeccccCHH---HHHHhccCCcEEeccCcc-----cceeeecccCCchhHHHHHHhhheeeEeccCC
Confidence 344443 588999999999654 456688887776665432 335566766666665544 34444433 345
Q ss_pred CeEEEEeCChHHHHHHHHHHHc----------cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccE
Q 011060 89 GKTIVFTQTKRDADEVSLALTS----------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~----------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~ 158 (494)
+.+|||....++.+...+.|.. .+-+.++|+.||.+.+.+|++.-.+|..+|++||++|+..|.|++|.+
T Consensus 474 GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~y 553 (902)
T KOG0923|consen 474 GDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKY 553 (902)
T ss_pred ccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEE
Confidence 7899999999998888777753 156889999999999999999999999999999999999999999999
Q ss_pred EEEeC------------------CCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccCCCChHH
Q 011060 159 IIHYE------------------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED 220 (494)
Q Consensus 159 VI~~~------------------~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~ 220 (494)
||+-+ .|.+..+-.||+||+||.| +|.|+-||+...+ .+.++. -+.++
T Consensus 554 ViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~aY--~~eLE~-----------~t~PE 619 (902)
T KOG0923|consen 554 VIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWAY--EHELEE-----------MTVPE 619 (902)
T ss_pred EecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhhh--hhhhcc-----------CCCcc
Confidence 99533 3678899999999999997 9999999997443 333322 22346
Q ss_pred HHHHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCceEEEe
Q 011060 221 VLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291 (494)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l~~~~~~~~~r~l~~~~~~~~~~~~ 291 (494)
+....+..++..|+++...++-.| ++++.+..+.|..||..|..+.+....-.|+.....|..+++
T Consensus 620 IqRtnL~nvVL~LkSLGI~Dl~~F-----dFmDpPp~etL~~aLE~LyaLGALn~~GeLTk~GrrMaEfP~ 685 (902)
T KOG0923|consen 620 IQRTNLGNVVLLLKSLGIHDLIHF-----DFLDPPPTETLLKALEQLYALGALNHLGELTKLGRRMAEFPV 685 (902)
T ss_pred eeeccchhHHHHHHhcCcchhccc-----ccCCCCChHHHHHHHHHHHHhhccccccchhhhhhhhhhcCC
Confidence 667778888899999888887777 788999999999999999877666555555555555554443
No 73
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.78 E-value=7.2e-18 Score=178.67 Aligned_cols=112 Identities=18% Similarity=0.213 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHH-ccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEec-cccccc
Q 011060 74 KRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT-DVAARG 150 (494)
Q Consensus 74 k~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaT-d~~~~G 150 (494)
+..++..++..+ ..+.++||||+++++++.|++.|.+ ++.+..+||+|++++|..+++.|++++..||||| +++++|
T Consensus 329 Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG 408 (501)
T PHA02558 329 RNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTG 408 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccc
Confidence 344444444333 3457899999999999999999985 7899999999999999999999999999999998 999999
Q ss_pred CCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCc
Q 011060 151 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEG 185 (494)
Q Consensus 151 idip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g 185 (494)
+|+|++++||++.+|.+...|+||+||++|.+...
T Consensus 409 ~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 409 ISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred cccccccEEEEecCCcchhhhhhhhhccccCCCCC
Confidence 99999999999999999999999999999987443
No 74
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.78 E-value=3.1e-17 Score=177.05 Aligned_cols=214 Identities=21% Similarity=0.315 Sum_probs=145.0
Q ss_pred HHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCc------cHHHHHHHHHH
Q 011060 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT------SKRTILSDLIT 83 (494)
Q Consensus 10 l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~------~k~~~l~~ll~ 83 (494)
++.+....+ +.|.|.+|||+.+ ...+++..........++.... ....++..+..... .-..++..+.+
T Consensus 174 LeRL~~l~~-~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~---~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~ 248 (814)
T COG1201 174 LERLRELAG-DFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSA---AKKLEIKVISPVEDLIYDEELWAALYERIAE 248 (814)
T ss_pred HHHHHhhCc-ccEEEeehhccCC-HHHHHHHhcCCCCceEEEEccc---CCcceEEEEecCCccccccchhHHHHHHHHH
Confidence 444455555 8999999999964 3334443333321222221111 12222222222221 11223344444
Q ss_pred HHccCCeEEEEeCChHHHHHHHHHHHcc--CcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEE
Q 011060 84 VYAKGGKTIVFTQTKRDADEVSLALTSI--IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (494)
Q Consensus 84 ~~~~~~~~iVF~~t~~~~~~l~~~l~~~--~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~ 161 (494)
...+...+|||+||+..+|.++..|.+. ..+..+||.++.++|..+.++|++|+.+.+|||..++-|||+.+|++|||
T Consensus 249 ~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq 328 (814)
T COG1201 249 LVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQ 328 (814)
T ss_pred HHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEE
Confidence 4445578999999999999999999974 68999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHhHHHHHhhccCc-CCCCceEEEecChhhH--HHHHHHHHHhcCCccccCCCC-hHHHHHHHHHH
Q 011060 162 YELPNDPETFVHRSGRTGR-AGKEGTAILMFTSSQR--RTVRSLERDVGCKFEFVSPPV-VEDVLESSAEQ 228 (494)
Q Consensus 162 ~~~P~~~~~y~qr~GR~gR-~g~~g~~i~l~~~~e~--~~~~~l~~~~~~~~~~~~~p~-~~~~~~~~~~~ 228 (494)
|..|.++..++||+||+|+ .+.....+++....+. ...........-+++.+.+|. .-+++..+...
T Consensus 329 ~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg 399 (814)
T COG1201 329 LGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVG 399 (814)
T ss_pred eCCcHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHH
Confidence 9999999999999999997 4555677777666332 222233445555666555553 23444444433
No 75
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.78 E-value=2.7e-18 Score=171.88 Aligned_cols=122 Identities=33% Similarity=0.560 Sum_probs=106.2
Q ss_pred ccHHHHHHHHHHHHc---cCCeEEEEeCChHHHHHHHHHHHc-cCcEE-EE--------eCCCCHHHHHHHHhhccCCcE
Q 011060 72 TSKRTILSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS-IIASE-AL--------HGDISQHQRERTLNGFRQGKF 138 (494)
Q Consensus 72 ~~k~~~l~~ll~~~~---~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~-~l--------hg~~~~~~R~~~~~~F~~g~~ 138 (494)
..|++.+..+++... .+.++|||++.+++++.+..+|.+ +..+. .+ ..+|+|.++.+++++|++|++
T Consensus 347 HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~ 426 (542)
T COG1111 347 HPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEY 426 (542)
T ss_pred CccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCc
Confidence 357777777776542 356999999999999999999986 33332 22 247999999999999999999
Q ss_pred EEEEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChh
Q 011060 139 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS 194 (494)
Q Consensus 139 ~iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~ 194 (494)
+|||||+++++|||||++++||.|++-.|+..++||.|||||. ++|.+++|++..
T Consensus 427 nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 427 NVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred eEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 9999999999999999999999999999999999999999997 899999998876
No 76
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.77 E-value=6.2e-18 Score=180.50 Aligned_cols=168 Identities=20% Similarity=0.203 Sum_probs=130.4
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEE-EEEEcCCccHHHHH-HHHHHHHccCCeEEEEeCChH
Q 011060 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTIL-SDLITVYAKGGKTIVFTQTKR 99 (494)
Q Consensus 22 q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~l-~~ll~~~~~~~~~iVF~~t~~ 99 (494)
.+..||.|...+..++.+.|--+. +.+.. +.+.....+ -.+......|..++ ..+.+.+..+.++||||+|++
T Consensus 342 kl~GmTGTa~te~~E~~~iY~l~v--v~IPt---nkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~ 416 (745)
T TIGR00963 342 KLSGMTGTAKTEEEEFEKIYNLEV--VVVPT---NRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVE 416 (745)
T ss_pred hhhccCCCcHHHHHHHHHHhCCCE--EEeCC---CCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 455688998777666666664332 22221 111111111 11122334566555 445555677889999999999
Q ss_pred HHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCC-------ccEEEEeCCCCCHhHH
Q 011060 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN-------VDLIIHYELPNDPETF 171 (494)
Q Consensus 100 ~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~-------v~~VI~~~~P~~~~~y 171 (494)
.++.++..|.+ ++++..||++ +.+|+..+.+|+.+...|+||||+|+||+||+. ..|||++++|.+...|
T Consensus 417 ~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~ 494 (745)
T TIGR00963 417 KSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRID 494 (745)
T ss_pred HHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHH
Confidence 99999999985 8999999999 889999999999999999999999999999998 5599999999999999
Q ss_pred HHHhhccCcCCCCceEEEecChhhH
Q 011060 172 VHRSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 172 ~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (494)
.||.|||||.|.+|.+.+|++..|.
T Consensus 495 ~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 495 NQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred HHHhccccCCCCCcceEEEEeccHH
Confidence 9999999999999999999998764
No 77
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.77 E-value=6.4e-18 Score=146.09 Aligned_cols=127 Identities=46% Similarity=0.772 Sum_probs=111.9
Q ss_pred EEEEEEcCCccHHHHHHHHHHHHc-cCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEE
Q 011060 63 KLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTV 140 (494)
Q Consensus 63 ~~~~~~~~~~~k~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~i 140 (494)
.+++...+ ..|...+..++.... ...++||||++++.++.+++.|.+ ...+..+|+.++..+|..++++|+++...|
T Consensus 3 ~~~~~~~~-~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 81 (131)
T cd00079 3 KQYVLPVE-DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVV 81 (131)
T ss_pred EEEEEECC-HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcE
Confidence 34444433 267777777776553 467999999999999999999985 788999999999999999999999999999
Q ss_pred EEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEe
Q 011060 141 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (494)
Q Consensus 141 LVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l 190 (494)
||+|+++++|+|+|.+++||.+++|++...|+|++||++|.|+.+.++++
T Consensus 82 li~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 82 LVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred EEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999999999999988887764
No 78
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.74 E-value=4.2e-17 Score=185.75 Aligned_cols=160 Identities=19% Similarity=0.297 Sum_probs=119.5
Q ss_pred hCCCCCc--EEEEeec-CChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHHHHHHccCCeEE
Q 011060 16 NLPPKRQ--SMLFSAT-MPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTI 92 (494)
Q Consensus 16 ~~~~~~q--~il~SAT-~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~i 92 (494)
.+|+++| +++|||| +|..+.. .+++++..+++.. ......++.+.++.... +...|.++++.+ +.++|
T Consensus 260 ~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~--~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~I 330 (1171)
T TIGR01054 260 AIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGG--GSDTLRNVVDVYVEDED--LKETLLEIVKKL--GTGGI 330 (1171)
T ss_pred hhhhccCcEEEEEeCCCCccccHH---HHcccccceEecC--ccccccceEEEEEeccc--HHHHHHHHHHHc--CCCEE
Confidence 4566666 5678999 5766442 3455665565532 23345677777765443 345566777655 36899
Q ss_pred EEeCCh---HHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEe----cccccccCCCCC-ccEEEEeC
Q 011060 93 VFTQTK---RDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVA----TDVAARGLDIPN-VDLIIHYE 163 (494)
Q Consensus 93 VF~~t~---~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVa----Td~~~~Gidip~-v~~VI~~~ 163 (494)
|||+|+ +.|++|++.|.+ ++.+..+||+|++ +++++|++|+++|||| ||+++||||+|+ |++|||||
T Consensus 331 VFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~ 406 (1171)
T TIGR01054 331 VYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLG 406 (1171)
T ss_pred EEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEEC
Confidence 999999 999999999985 7999999999973 6899999999999999 599999999999 89999999
Q ss_pred CCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHH
Q 011060 164 LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (494)
Q Consensus 164 ~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~ 203 (494)
+|.. +.+.++..+++.....+..++
T Consensus 407 ~P~~---------------~~~~~~~~~~~~~~~~~~~~~ 431 (1171)
T TIGR01054 407 VPKF---------------KVPLKEALSSPRRLLLLLSIL 431 (1171)
T ss_pred CCCE---------------EEecccccccHHHHHHHHHhh
Confidence 9986 234556666666655555554
No 79
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=5.8e-17 Score=174.56 Aligned_cols=167 Identities=22% Similarity=0.215 Sum_probs=128.9
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEE-EEEEcCCccHHHHHHHHHH-HHccCCeEEEEeCChH
Q 011060 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTILSDLIT-VYAKGGKTIVFTQTKR 99 (494)
Q Consensus 22 q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~-~~~~~~~~iVF~~t~~ 99 (494)
++.-||.|...+..++.+.|--+ ++.+.. +++.....+ -.+......|..+|...+. .+..+.++||||+|+.
T Consensus 377 kl~GmTGTa~~e~~Ef~~iY~l~--vv~IPt---nkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~ 451 (796)
T PRK12906 377 KLSGMTGTAKTEEEEFREIYNME--VITIPT---NRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIE 451 (796)
T ss_pred hhhccCCCCHHHHHHHHHHhCCC--EEEcCC---CCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHH
Confidence 45568888877666665555333 222221 111111111 1122333467666666553 4456789999999999
Q ss_pred HHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCC---Ccc-----EEEEeCCCCCHhH
Q 011060 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---NVD-----LIIHYELPNDPET 170 (494)
Q Consensus 100 ~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip---~v~-----~VI~~~~P~~~~~ 170 (494)
.++.|+..|.+ ++++..||+++.+.+++.+.++++.|. |+||||+|+||+||+ +|. |||+++.|.+...
T Consensus 452 ~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri 529 (796)
T PRK12906 452 SSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRI 529 (796)
T ss_pred HHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHH
Confidence 99999999985 899999999999999999999988877 999999999999994 899 9999999999999
Q ss_pred HHHHhhccCcCCCCceEEEecChhh
Q 011060 171 FVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 171 y~qr~GR~gR~g~~g~~i~l~~~~e 195 (494)
|.|+.|||||.|.+|.+.++++..|
T Consensus 530 ~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 530 DNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred HHHHhhhhccCCCCcceEEEEeccc
Confidence 9999999999999999999998875
No 80
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.72 E-value=2.1e-17 Score=166.72 Aligned_cols=176 Identities=24% Similarity=0.338 Sum_probs=138.3
Q ss_pred HHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHHHHHHc------
Q 011060 13 ILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA------ 86 (494)
Q Consensus 13 Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~------ 86 (494)
=++.+-+..|.|.+|||+.+. .++++++--+.+..+ ..+.+--.|..+.....+|..++..|.+...
T Consensus 365 RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~------~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~ssk 437 (830)
T COG1202 365 RLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYD------ERPVPLERHLVFARNESEKWDIIARLVKREFSTESSK 437 (830)
T ss_pred HHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeec------CCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhcc
Confidence 345555699999999999654 346665543333221 2223333466666667899999988886531
Q ss_pred -cCCeEEEEeCChHHHHHHHHHHH-ccCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEE---
Q 011060 87 -KGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH--- 161 (494)
Q Consensus 87 -~~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~--- 161 (494)
-.+++|||+++++.|.+|+..|. +++++.++|++|+..+|..+...|.++++.++|+|-+++.|+|+|.-.+|+.
T Consensus 438 g~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLa 517 (830)
T COG1202 438 GYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLA 517 (830)
T ss_pred CcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHH
Confidence 13699999999999999999998 5899999999999999999999999999999999999999999997665542
Q ss_pred eCCCC-CHhHHHHHhhccCcCC--CCceEEEecChhh
Q 011060 162 YELPN-DPETFVHRSGRTGRAG--KEGTAILMFTSSQ 195 (494)
Q Consensus 162 ~~~P~-~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e 195 (494)
.+.-| ++..|.||+|||||.+ ..|++|+++.+-.
T Consensus 518 MG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~ 554 (830)
T COG1202 518 MGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGK 554 (830)
T ss_pred cccccCCHHHHHHHhcccCCCCcccCceEEEEecCCh
Confidence 33444 8999999999999987 6799999987743
No 81
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.72 E-value=3.1e-16 Score=164.72 Aligned_cols=105 Identities=17% Similarity=0.324 Sum_probs=89.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc--------cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEE
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS--------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~--------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~V 159 (494)
.+.++||.+-....-.|...|.. .+.+..+|+.++..++.++.+....+..+++++|++++..|.|.++.+|
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~v 722 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYV 722 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEE
Confidence 47899999999999999888763 2678899999999999999999999999999999999999999998888
Q ss_pred EEeCCC------------------CCHhHHHHHhhccCcCCCCceEEEecCh
Q 011060 160 IHYELP------------------NDPETFVHRSGRTGRAGKEGTAILMFTS 193 (494)
Q Consensus 160 I~~~~P------------------~~~~~y~qr~GR~gR~g~~g~~i~l~~~ 193 (494)
|..+.- .+....+||.||++|. ++|.|..+++.
T Consensus 723 id~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 723 IDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSR 773 (1282)
T ss_pred EeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHH
Confidence 854421 2566779999999997 68888888665
No 82
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.71 E-value=3.8e-17 Score=159.52 Aligned_cols=180 Identities=22% Similarity=0.351 Sum_probs=139.4
Q ss_pred CCCcEEEEeecCChHHHHHHH--HHcCCCcEEEeccccccccccceEEEEEE-c--CCccHHHHHHHHHH-HHc------
Q 011060 19 PKRQSMLFSATMPSWVKKLSR--KYLDNPLNIDLVGNQDEKLAEGIKLYAIS-T--TATSKRTILSDLIT-VYA------ 86 (494)
Q Consensus 19 ~~~q~il~SAT~~~~v~~~~~--~~~~~~~~v~~~~~~~~~~~~~i~~~~~~-~--~~~~k~~~l~~ll~-~~~------ 86 (494)
++...+.++||...+|++-+- ..|++|+.+--.+ ....++ +|-. . ..++.+..|.++.. .+.
T Consensus 175 ~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP----~FR~NL--FYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~ 248 (641)
T KOG0352|consen 175 PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTP----TFRDNL--FYDNHMKSFITDCLTVLADFSSSNLGKHEKAS 248 (641)
T ss_pred CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCc----chhhhh--hHHHHHHHHhhhHhHhHHHHHHHhcCChhhhh
Confidence 377899999999998887543 3456776542211 111111 1110 0 01233334444322 111
Q ss_pred -----cCCeEEEEeCChHHHHHHHHHHH-ccCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEE
Q 011060 87 -----KGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (494)
Q Consensus 87 -----~~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI 160 (494)
..+-.||||.|+++||+++-.|. .++.+..+|.+|...+|.++.+++.++++.||+||..+.+|+|-|+|.+||
T Consensus 249 ~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFVi 328 (641)
T KOG0352|consen 249 QNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVI 328 (641)
T ss_pred cCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEE
Confidence 12457999999999999999998 589999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHH
Q 011060 161 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (494)
Q Consensus 161 ~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~ 204 (494)
|+++|.+...|.|-+||+||.|+...|-++|+.++...+..|.+
T Consensus 329 HW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 329 HWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred ecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHh
Confidence 99999999999999999999999999999999999877776643
No 83
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.70 E-value=3.1e-17 Score=128.99 Aligned_cols=76 Identities=39% Similarity=0.768 Sum_probs=72.3
Q ss_pred HHH-ccCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCC
Q 011060 107 ALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG 182 (494)
Q Consensus 107 ~l~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g 182 (494)
+|+ .++.+..+||++++.+|+.+++.|+++...|||||+++++|||+|++++||++++|+++..|+|++||++|.|
T Consensus 2 ~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 2 FLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 455 3789999999999999999999999999999999999999999999999999999999999999999999976
No 84
>PRK09694 helicase Cas3; Provisional
Probab=99.70 E-value=6.6e-16 Score=170.29 Aligned_cols=107 Identities=25% Similarity=0.449 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcc----CcEEEEeCCCCHHHH----HHHHhhc-cCCc---EEEE
Q 011060 74 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI----IASEALHGDISQHQR----ERTLNGF-RQGK---FTVL 141 (494)
Q Consensus 74 k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~----~~~~~lhg~~~~~~R----~~~~~~F-~~g~---~~iL 141 (494)
...++..+++....+.++||||||++.++++++.|++. +.+..+|+.+++.+| +++++.| ++++ ..||
T Consensus 546 ~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~IL 625 (878)
T PRK09694 546 DLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRIL 625 (878)
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEE
Confidence 34566777776667789999999999999999999863 479999999999999 4677888 6665 4799
Q ss_pred EecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCC
Q 011060 142 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 183 (494)
Q Consensus 142 VaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~ 183 (494)
|||+++++|||| ++++||....| .+.|+||+||++|.++
T Consensus 626 VaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 626 VATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 999999999999 58999998877 6799999999999875
No 85
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.69 E-value=5.1e-16 Score=166.87 Aligned_cols=119 Identities=24% Similarity=0.334 Sum_probs=102.2
Q ss_pred cHHHHHHHHHHHHc-cCCeEEEEeCChHHHHHHHHHHHccCcEEEEeCCCCHHHHHHHHhhccCC-cEEEEEeccccccc
Q 011060 73 SKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQG-KFTVLVATDVAARG 150 (494)
Q Consensus 73 ~k~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~F~~g-~~~iLVaTd~~~~G 150 (494)
.|..++..|++.+. .+.++||||.+...++.++..|. +..+||++++.+|.+++++|+++ .+++||+|+++.+|
T Consensus 480 ~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeG 555 (732)
T TIGR00603 480 NKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTS 555 (732)
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC----CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccc
Confidence 45666677776653 56799999999999998888773 56799999999999999999875 78999999999999
Q ss_pred CCCCCccEEEEeCCCC-CHhHHHHHhhccCcCCCCceE-------EEecChhh
Q 011060 151 LDIPNVDLIIHYELPN-DPETFVHRSGRTGRAGKEGTA-------ILMFTSSQ 195 (494)
Q Consensus 151 idip~v~~VI~~~~P~-~~~~y~qr~GR~gR~g~~g~~-------i~l~~~~e 195 (494)
||+|++++||+++.|. +...|+||+||++|.+..+.+ |.|+++.+
T Consensus 556 IDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 556 IDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred cCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCc
Confidence 9999999999999984 999999999999998866554 77777644
No 86
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=1.9e-16 Score=171.62 Aligned_cols=168 Identities=21% Similarity=0.229 Sum_probs=127.9
Q ss_pred EEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHHHHH-HccCCeEEEEeCChHHH
Q 011060 23 SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRDA 101 (494)
Q Consensus 23 ~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~-~~~~~~~iVF~~t~~~~ 101 (494)
+--||.|...+..++.+-|--+. +.+.. ..+....... -.+......|..+|...+.. +..+.++||||+|++.+
T Consensus 536 LaGMTGTA~te~~Ef~~iY~L~V--v~IPT-nrP~~R~D~~-d~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~s 611 (1025)
T PRK12900 536 LAGMTGTAETEASEFFEIYKLDV--VVIPT-NKPIVRKDMD-DLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVS 611 (1025)
T ss_pred hcccCCCChhHHHHHHHHhCCcE--EECCC-CCCcceecCC-CeEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHH
Confidence 44578888766666665553332 22221 1111111111 12223445677777776644 35678999999999999
Q ss_pred HHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCC---Ccc-----EEEEeCCCCCHhHHH
Q 011060 102 DEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---NVD-----LIIHYELPNDPETFV 172 (494)
Q Consensus 102 ~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip---~v~-----~VI~~~~P~~~~~y~ 172 (494)
+.|+..|.. ++++..||+ .+.+|+..+.+|+.+...|+||||+|+||+||+ .|. +||+++.|.+...|.
T Consensus 612 E~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~ 689 (1025)
T PRK12900 612 ETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDR 689 (1025)
T ss_pred HHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHH
Confidence 999999985 899999997 589999999999999999999999999999999 554 459999999999999
Q ss_pred HHhhccCcCCCCceEEEecChhhH
Q 011060 173 HRSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 173 qr~GR~gR~g~~g~~i~l~~~~e~ 196 (494)
||.|||||.|.+|.+++|++..|.
T Consensus 690 Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 690 QLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred HHhhhhhcCCCCcceEEEechhHH
Confidence 999999999999999999998764
No 87
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.69 E-value=2.3e-16 Score=161.58 Aligned_cols=228 Identities=18% Similarity=0.281 Sum_probs=170.1
Q ss_pred CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHH-HHHHHHHHH--ccCCeEEEEe
Q 011060 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVY--AKGGKTIVFT 95 (494)
Q Consensus 19 ~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~l~~ll~~~--~~~~~~iVF~ 95 (494)
.+.++|.+||||... + ...|+.+...+.+.+.. ..++..|...+.++..+ ++...+..+ ...+.+|||.
T Consensus 499 rdlKliVtSATm~a~--k-f~nfFgn~p~f~IpGRT-----yPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfm 570 (1042)
T KOG0924|consen 499 RDLKLIVTSATMDAQ--K-FSNFFGNCPQFTIPGRT-----YPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFM 570 (1042)
T ss_pred ccceEEEeeccccHH--H-HHHHhCCCceeeecCCc-----cceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEec
Confidence 478999999999443 3 44577776666665432 23445555555444333 344444333 2357899999
Q ss_pred CChHHHHHHHHHHHc-----------cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEEeC-
Q 011060 96 QTKRDADEVSLALTS-----------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE- 163 (494)
Q Consensus 96 ~t~~~~~~l~~~l~~-----------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~~~- 163 (494)
+..+.++..+..+.. .+.+.++++.||+..+.++++.-..+..+++|||++|+..|.||++.+||+.+
T Consensus 571 tGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy 650 (1042)
T KOG0924|consen 571 TGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGY 650 (1042)
T ss_pred CCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCc
Confidence 998877765555542 26789999999999999999999999999999999999999999999999654
Q ss_pred -----------------CCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccCCCChHHHHHHHH
Q 011060 164 -----------------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA 226 (494)
Q Consensus 164 -----------------~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~ 226 (494)
.|.+...-.||+|||||.+ +|.||-+|+.... ...+-+.+.+|+....+
T Consensus 651 ~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ay-------------~~eml~stvPEIqRTNl 716 (1042)
T KOG0924|consen 651 CKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTEDAY-------------KNEMLPSTVPEIQRTNL 716 (1042)
T ss_pred eeeeecccccccceeEEEechhccchhhccccCCCC-CcceeeehhhhHH-------------HhhcccCCCchhhhcch
Confidence 3678888899999999986 9999999997442 12233455678888888
Q ss_pred HHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCCCCC
Q 011060 227 EQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRP 273 (494)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l~~~~~~ 273 (494)
.+++..|+.+..+++..| ++++.+..+.+..++-.|.-+.+.
T Consensus 717 ~nvVLlLkslgV~dll~F-----dFmD~Pped~~~~sly~Lw~LGAl 758 (1042)
T KOG0924|consen 717 SNVVLLLKSLGVDDLLKF-----DFMDPPPEDNLLNSLYQLWTLGAL 758 (1042)
T ss_pred hhHHHHHHhcChhhhhCC-----CcCCCCHHHHHHHHHHHHHHhhcc
Confidence 899999988877777666 677888788888888887644443
No 88
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.68 E-value=7.1e-16 Score=167.19 Aligned_cols=236 Identities=19% Similarity=0.283 Sum_probs=170.1
Q ss_pred CCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccc--------------cceEEEE-----------E-EcC
Q 011060 17 LPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLA--------------EGIKLYA-----------I-STT 70 (494)
Q Consensus 17 ~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~--------------~~i~~~~-----------~-~~~ 70 (494)
..++.++||||||+.. +..+.|+....++.+.+...+... ....++. + ...
T Consensus 316 ~~p~LkvILMSAT~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (924)
T KOG0920|consen 316 RNPDLKVILMSATLDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWE 392 (924)
T ss_pred hCCCceEEEeeeecch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhcc
Confidence 3468999999999974 366778887777766443221100 0001110 0 001
Q ss_pred CccHHHHHHHHHHHHc---cCCeEEEEeCChHHHHHHHHHHHc--------cCcEEEEeCCCCHHHHHHHHhhccCCcEE
Q 011060 71 ATSKRTILSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS--------IIASEALHGDISQHQRERTLNGFRQGKFT 139 (494)
Q Consensus 71 ~~~k~~~l~~ll~~~~---~~~~~iVF~~t~~~~~~l~~~l~~--------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~ 139 (494)
.+...+++..++..+. ..+.+|||.+...++..+++.|.. .+.+.++|+.|+..+++.+++....|..+
T Consensus 393 ~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RK 472 (924)
T KOG0920|consen 393 PEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRK 472 (924)
T ss_pred ccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcch
Confidence 1234556666666552 357899999999999999999963 25688999999999999999999999999
Q ss_pred EEEecccccccCCCCCccEEEE--------eCCCC----------CHhHHHHHhhccCcCCCCceEEEecChhhHHHHHH
Q 011060 140 VLVATDVAARGLDIPNVDLIIH--------YELPN----------DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 201 (494)
Q Consensus 140 iLVaTd~~~~Gidip~v~~VI~--------~~~P~----------~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~ 201 (494)
|++||++|+..|.|++|.+||+ ||+-. +...-.||.|||||. ++|.||.+|+......+
T Consensus 473 IIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~~~-- 549 (924)
T KOG0920|consen 473 IILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYEKL-- 549 (924)
T ss_pred hhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhhhc--
Confidence 9999999999999999999995 44332 456669999999998 79999999998553211
Q ss_pred HHHHhcCCccccCCCChHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCCCC
Q 011060 202 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSR 272 (494)
Q Consensus 202 l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l~~~~~ 272 (494)
...-...|++...++++...++-+...... +...++++.+.++++..|+..|.....
T Consensus 550 -----------~~~~q~PEilR~pL~~l~L~iK~l~~~~~~---~fLskaldpP~~~~v~~a~~~L~~iga 606 (924)
T KOG0920|consen 550 -----------MLAYQLPEILRTPLEELCLHIKVLEQGSIK---AFLSKALDPPPADAVDLAIERLKQIGA 606 (924)
T ss_pred -----------ccccCChHHHhChHHHhhheeeeccCCCHH---HHHHHhcCCCChHHHHHHHHHHHHhcc
Confidence 111235677888888888887766555555 445577888999999888888764433
No 89
>PRK13766 Hef nuclease; Provisional
Probab=99.67 E-value=6.8e-16 Score=172.70 Aligned_cols=121 Identities=36% Similarity=0.562 Sum_probs=108.4
Q ss_pred ccHHHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCC--------CCHHHHHHHHhhccCCcEE
Q 011060 72 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGD--------ISQHQRERTLNGFRQGKFT 139 (494)
Q Consensus 72 ~~k~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~--------~~~~~R~~~~~~F~~g~~~ 139 (494)
..|...|.++|+.. ..+.++||||++++.++.|++.|.. ++.+..+||. |++.+|.+++++|++++++
T Consensus 346 ~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~ 425 (773)
T PRK13766 346 HPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFN 425 (773)
T ss_pred ChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCC
Confidence 45777788887654 3568999999999999999999974 7888889886 9999999999999999999
Q ss_pred EEEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecCh
Q 011060 140 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 193 (494)
Q Consensus 140 iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~ 193 (494)
|||||+++++|+|+|++++||+||+|++...|+||+||+||.+ ++.+++++..
T Consensus 426 vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~ 478 (773)
T PRK13766 426 VLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAK 478 (773)
T ss_pred EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeC
Confidence 9999999999999999999999999999999999999999986 4788888764
No 90
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.66 E-value=9.3e-16 Score=162.08 Aligned_cols=123 Identities=33% Similarity=0.535 Sum_probs=104.9
Q ss_pred ccHHHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHc----cCcEEEEe--------CCCCHHHHHHHHhhccCC
Q 011060 72 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS----IIASEALH--------GDISQHQRERTLNGFRQG 136 (494)
Q Consensus 72 ~~k~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lh--------g~~~~~~R~~~~~~F~~g 136 (494)
..|++.|..++..+ .++.++||||.||+.|+.|..+|.. .+....+- -+|+|.++.+++++|++|
T Consensus 394 npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G 473 (746)
T KOG0354|consen 394 NPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDG 473 (746)
T ss_pred ChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCC
Confidence 46777777666544 3457999999999999999999873 23444443 379999999999999999
Q ss_pred cEEEEEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhH
Q 011060 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 137 ~~~iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (494)
+++|||||+++++||||++|++||-||.-.++...+||.|| ||+ +.|.++++++..+.
T Consensus 474 ~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~ 531 (746)
T KOG0354|consen 474 EINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEV 531 (746)
T ss_pred CccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhH
Confidence 99999999999999999999999999999999999999999 998 68899999885543
No 91
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.65 E-value=1.7e-14 Score=150.60 Aligned_cols=177 Identities=18% Similarity=0.318 Sum_probs=133.1
Q ss_pred HHHhCCC-CCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHHHHHHccCCeE
Q 011060 13 ILENLPP-KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKT 91 (494)
Q Consensus 13 Il~~~~~-~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~ 91 (494)
.|..-.. .+-+++||||+=+....+. .+.|-. +.+. .+.++..........+.+.+.+++..+.+...++.++
T Consensus 403 ~L~~KG~~~Ph~LvMTATPIPRTLAlt--~fgDld-vS~I---dElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~~GrQa 476 (677)
T COG1200 403 ALREKGEQNPHVLVMTATPIPRTLALT--AFGDLD-VSII---DELPPGRKPITTVVIPHERRPEVYERIREEIAKGRQA 476 (677)
T ss_pred HHHHhCCCCCcEEEEeCCCchHHHHHH--Hhcccc-chhh---ccCCCCCCceEEEEeccccHHHHHHHHHHHHHcCCEE
Confidence 3444444 5789999999855544444 333321 2221 1122222222333445567778888888888888999
Q ss_pred EEEeCChHH--------HHHHHHHHHc---cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEE
Q 011060 92 IVFTQTKRD--------ADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (494)
Q Consensus 92 iVF~~t~~~--------~~~l~~~l~~---~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI 160 (494)
.|.|+-.++ |+.+++.|+. .+.+..+||.|+.+++++++++|++|+++|||||.|.+.|||+|+.+++|
T Consensus 477 Y~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMV 556 (677)
T COG1200 477 YVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMV 556 (677)
T ss_pred EEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEE
Confidence 999987654 4566777774 35689999999999999999999999999999999999999999999999
Q ss_pred EeCCCC-CHhHHHHHhhccCcCCCCceEEEecChhh
Q 011060 161 HYELPN-DPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 161 ~~~~P~-~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (494)
.++.-. -.+++.|-.||+||....+.|++++.+..
T Consensus 557 Ie~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 557 IENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred EechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 877543 67889999999999999999999998766
No 92
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.65 E-value=5.8e-15 Score=146.52 Aligned_cols=230 Identities=17% Similarity=0.306 Sum_probs=175.0
Q ss_pred HHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHH-HHHHHHHH--cc
Q 011060 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTI-LSDLITVY--AK 87 (494)
Q Consensus 11 ~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~-l~~ll~~~--~~ 87 (494)
++++..-| +.++|.||||+... ..+.|+.|+..+.+.+ ...++.+|...+..+.+++ +..+++.+ +.
T Consensus 183 k~v~~~rp-dLk~vvmSatl~a~---Kfq~yf~n~Pll~vpg------~~PvEi~Yt~e~erDylEaairtV~qih~~ee 252 (699)
T KOG0925|consen 183 KEVVRNRP-DLKLVVMSATLDAE---KFQRYFGNAPLLAVPG------THPVEIFYTPEPERDYLEAAIRTVLQIHMCEE 252 (699)
T ss_pred HHHHhhCC-CceEEEeecccchH---HHHHHhCCCCeeecCC------CCceEEEecCCCChhHHHHHHHHHHHHHhccC
Confidence 34455554 89999999999443 5667888988887643 2335557766666565554 44455544 34
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc----------CcEEEEeCCCCHHHHHHHHhhccCC-----cEEEEEecccccccCC
Q 011060 88 GGKTIVFTQTKRDADEVSLALTSI----------IASEALHGDISQHQRERTLNGFRQG-----KFTVLVATDVAARGLD 152 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~----------~~~~~lhg~~~~~~R~~~~~~F~~g-----~~~iLVaTd~~~~Gid 152 (494)
.+.+|||....++++..++.+.+. +.|.+|| ++++..+++..... ..+|+|+|++++..+.
T Consensus 253 ~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetslt 328 (699)
T KOG0925|consen 253 PGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLT 328 (699)
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeee
Confidence 689999999999999999888731 5788898 55666666655422 3579999999999999
Q ss_pred CCCccEEEEeC------------------CCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccC
Q 011060 153 IPNVDLIIHYE------------------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (494)
Q Consensus 153 ip~v~~VI~~~------------------~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (494)
|+.|.+||+-+ -|.+..+-.||+||+||. ++|.|+.+|+++-. . .++.
T Consensus 329 idgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~~~----------~---~em~ 394 (699)
T KOG0925|consen 329 IDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF----------E---KEMQ 394 (699)
T ss_pred eccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHHhh----------h---hcCC
Confidence 99999999543 267889999999999997 79999999997432 1 2244
Q ss_pred CCChHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCCCCC
Q 011060 215 PPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRP 273 (494)
Q Consensus 215 ~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l~~~~~~ 273 (494)
+.+..+++++.+..++..|+.+..+++..| ++++.+.+|.+++||..|..+...
T Consensus 395 ~~typeilrsNL~s~VL~LKklgI~dlvhf-----dfmDpPAPEtLMrALE~LnYLaaL 448 (699)
T KOG0925|consen 395 PQTYPEILRSNLSSTVLQLKKLGIDDLVHF-----DFMDPPAPETLMRALEVLNYLAAL 448 (699)
T ss_pred CCCcHHHHHHhhHHHHHHHHhcCcccccCC-----cCCCCCChHHHHHHHHHhhhhhhh
Confidence 556789999999999999999988888877 788999999999999887654433
No 93
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.63 E-value=8.1e-15 Score=154.64 Aligned_cols=176 Identities=20% Similarity=0.285 Sum_probs=119.0
Q ss_pred CCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCC---ccHHHHHHHHHHHHccCCeEEEE
Q 011060 18 PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA---TSKRTILSDLITVYAKGGKTIVF 94 (494)
Q Consensus 18 ~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~---~~k~~~l~~ll~~~~~~~~~iVF 94 (494)
..+.++|++|||++.+....+.. .....+.+...........++...+.... .-...++..+.+.+..+.++|||
T Consensus 127 ~~~~~vil~SATPsles~~~~~~--g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvf 204 (505)
T TIGR00595 127 KFNCPVVLGSATPSLESYHNAKQ--KAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILF 204 (505)
T ss_pred hcCCCEEEEeCCCCHHHHHHHhc--CCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEE
Confidence 35899999999977654444321 12222332211111112222222111110 01123455555666677899999
Q ss_pred eCChHH------------------------------------------------------------HHHHHHHHHcc---
Q 011060 95 TQTKRD------------------------------------------------------------ADEVSLALTSI--- 111 (494)
Q Consensus 95 ~~t~~~------------------------------------------------------------~~~l~~~l~~~--- 111 (494)
+|++.- ++.+++.|.+.
T Consensus 205 lnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~ 284 (505)
T TIGR00595 205 LNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPG 284 (505)
T ss_pred EeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCC
Confidence 887642 57888888763
Q ss_pred CcEEEEeCCCCHHHH--HHHHhhccCCcEEEEEecccccccCCCCCccEEE--EeCC----CC------CHhHHHHHhhc
Q 011060 112 IASEALHGDISQHQR--ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII--HYEL----PN------DPETFVHRSGR 177 (494)
Q Consensus 112 ~~~~~lhg~~~~~~R--~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI--~~~~----P~------~~~~y~qr~GR 177 (494)
.++..+|+++++.++ ++++++|++|+++|||+|+++++|+|+|+|++|+ ++|. |. ....|+|++||
T Consensus 285 ~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GR 364 (505)
T TIGR00595 285 ARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGR 364 (505)
T ss_pred CcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhc
Confidence 578899999987766 8999999999999999999999999999999885 5664 32 24678999999
Q ss_pred cCcCCCCceEEEecChhh
Q 011060 178 TGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 178 ~gR~g~~g~~i~l~~~~e 195 (494)
+||.++.|.+++.....+
T Consensus 365 agR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 365 AGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred cCCCCCCCEEEEEeCCCC
Confidence 999999999987654333
No 94
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.62 E-value=7.6e-15 Score=160.31 Aligned_cols=172 Identities=23% Similarity=0.373 Sum_probs=123.6
Q ss_pred CCCcEEEEeecCChHHHHHHHHHcC-CCcEEEeccccccccccceEEEEEEc------CCccHHHHHHHHHHHHccCCeE
Q 011060 19 PKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAIST------TATSKRTILSDLITVYAKGGKT 91 (494)
Q Consensus 19 ~~~q~il~SAT~~~~v~~~~~~~~~-~~~~v~~~~~~~~~~~~~i~~~~~~~------~~~~k~~~l~~ll~~~~~~~~~ 91 (494)
...|++.+|||+|+ ..+++. |++ ++...................++... +.......+..++..+..++++
T Consensus 179 ~~~rivgLSATlpN-~~evA~-wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qv 256 (766)
T COG1204 179 ELIRIVGLSATLPN-AEEVAD-WLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQV 256 (766)
T ss_pred cceEEEEEeeecCC-HHHHHH-HhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeE
Confidence 45899999999987 345555 443 33321111111111111122222221 1113355666677777888999
Q ss_pred EEEeCChHHHHHHHHHHHcc--------------------------------------CcEEEEeCCCCHHHHHHHHhhc
Q 011060 92 IVFTQTKRDADEVSLALTSI--------------------------------------IASEALHGDISQHQRERTLNGF 133 (494)
Q Consensus 92 iVF~~t~~~~~~l~~~l~~~--------------------------------------~~~~~lhg~~~~~~R~~~~~~F 133 (494)
||||++++.+...+..|.+. ..+..+|++|+.++|..+.+.|
T Consensus 257 LvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~F 336 (766)
T COG1204 257 LVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAF 336 (766)
T ss_pred EEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHH
Confidence 99999999999998888731 1255789999999999999999
Q ss_pred cCCcEEEEEecccccccCCCCCccEEE----EeC-----CCCCHhHHHHHhhccCcCC--CCceEEEecC
Q 011060 134 RQGKFTVLVATDVAARGLDIPNVDLII----HYE-----LPNDPETFVHRSGRTGRAG--KEGTAILMFT 192 (494)
Q Consensus 134 ~~g~~~iLVaTd~~~~Gidip~v~~VI----~~~-----~P~~~~~y~qr~GR~gR~g--~~g~~i~l~~ 192 (494)
+.|+++||+||+.++.|+|+|.-.+|| -|+ .+.++-+|+||+|||||.| ..|.++++.+
T Consensus 337 r~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~ 406 (766)
T COG1204 337 RKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILAT 406 (766)
T ss_pred hcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEec
Confidence 999999999999999999999877777 366 5678999999999999988 5577777773
No 95
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.60 E-value=5.4e-15 Score=142.50 Aligned_cols=191 Identities=21% Similarity=0.342 Sum_probs=148.6
Q ss_pred HHHHHHH--HHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHHHH
Q 011060 6 FEEDVEL--ILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 83 (494)
Q Consensus 6 F~~~l~~--Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~ 83 (494)
|+.|... ||+..-+...+|-++||....|..-++..+.-...+++... . ..+++.+ .+...+....+.+.++.+
T Consensus 234 fr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~-f--nr~nl~y-ev~qkp~n~dd~~edi~k 309 (695)
T KOG0353|consen 234 FRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAG-F--NRPNLKY-EVRQKPGNEDDCIEDIAK 309 (695)
T ss_pred cCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecc-c--CCCCcee-EeeeCCCChHHHHHHHHH
Confidence 5555543 66666678999999999998888877776653322333211 1 1223332 233334444455555555
Q ss_pred HH---ccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEE
Q 011060 84 VY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 84 ~~---~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~V 159 (494)
.+ ..+...||||-++++++.++..|++ ++.+-.+|..|.++++.-+-+.+-.|+++|+|||-++..|||-|+|.+|
T Consensus 310 ~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfv 389 (695)
T KOG0353|consen 310 LIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFV 389 (695)
T ss_pred HhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEE
Confidence 44 3456789999999999999999996 7999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHhHHHH-------------------------------------------HhhccCcCCCCceEEEecChhhH
Q 011060 160 IHYELPNDPETFVH-------------------------------------------RSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 160 I~~~~P~~~~~y~q-------------------------------------------r~GR~gR~g~~g~~i~l~~~~e~ 196 (494)
||..+|.+.+.|.| ..||+||.+.+..||++|.-.+.
T Consensus 390 ihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~di 469 (695)
T KOG0353|consen 390 IHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADI 469 (695)
T ss_pred EecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHH
Confidence 99999999999999 78999999999999999887665
Q ss_pred HHHH
Q 011060 197 RTVR 200 (494)
Q Consensus 197 ~~~~ 200 (494)
..+.
T Consensus 470 fk~s 473 (695)
T KOG0353|consen 470 FKIS 473 (695)
T ss_pred HhHH
Confidence 4433
No 96
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.59 E-value=3e-14 Score=155.64 Aligned_cols=186 Identities=17% Similarity=0.217 Sum_probs=124.3
Q ss_pred HHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEc--CC----ccHHHHHHHHHHHHcc
Q 011060 14 LENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAIST--TA----TSKRTILSDLITVYAK 87 (494)
Q Consensus 14 l~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~--~~----~~k~~~l~~ll~~~~~ 87 (494)
++....+.|+|++|||++.+....+.. .....+.+...........+....+.. .. .-...++..+-+.+..
T Consensus 288 ~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~ 365 (679)
T PRK05580 288 VRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLER 365 (679)
T ss_pred HHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHHc
Confidence 344456899999999987666554432 222333333221111122222211110 00 0112344445555666
Q ss_pred CCeEEEEeCCh------------------------------------------------------------HHHHHHHHH
Q 011060 88 GGKTIVFTQTK------------------------------------------------------------RDADEVSLA 107 (494)
Q Consensus 88 ~~~~iVF~~t~------------------------------------------------------------~~~~~l~~~ 107 (494)
+.++|||+|++ ..++.+++.
T Consensus 366 g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~ 445 (679)
T PRK05580 366 GEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEE 445 (679)
T ss_pred CCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHH
Confidence 77999998863 156678888
Q ss_pred HHc---cCcEEEEeCCCCH--HHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEE--eCCCCC----------HhH
Q 011060 108 LTS---IIASEALHGDISQ--HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH--YELPND----------PET 170 (494)
Q Consensus 108 l~~---~~~~~~lhg~~~~--~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~--~~~P~~----------~~~ 170 (494)
|.+ ...+..+|+++++ .++++++++|++++++|||+|+++++|+|+|+|++|+. .|.+.+ ...
T Consensus 446 l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~ 525 (679)
T PRK05580 446 LAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQL 525 (679)
T ss_pred HHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHH
Confidence 876 4578999999974 57899999999999999999999999999999999864 454433 257
Q ss_pred HHHHhhccCcCCCCceEEEecChhhHHHHHH
Q 011060 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 201 (494)
Q Consensus 171 y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~ 201 (494)
|+|++||+||.++.|.+++.....+...++.
T Consensus 526 l~q~~GRagR~~~~g~viiqT~~p~~~~~~~ 556 (679)
T PRK05580 526 LTQVAGRAGRAEKPGEVLIQTYHPEHPVIQA 556 (679)
T ss_pred HHHHHhhccCCCCCCEEEEEeCCCCCHHHHH
Confidence 8999999999999999998766544444433
No 97
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.59 E-value=1.6e-13 Score=138.23 Aligned_cols=166 Identities=25% Similarity=0.348 Sum_probs=131.7
Q ss_pred CCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHHHHHHccCCeEEEEeCChH
Q 011060 20 KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKR 99 (494)
Q Consensus 20 ~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~ 99 (494)
..|+|.+|||..++-.+... ...++-+-++...+-+.+ .+.....+..+++..+.+....+.++||-+-|++
T Consensus 386 ~~q~i~VSATPg~~E~e~s~-----~~vveQiIRPTGLlDP~i---evRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKk 457 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSG-----GNVVEQIIRPTGLLDPEI---EVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKK 457 (663)
T ss_pred cCCEEEEECCCChHHHHhcc-----CceeEEeecCCCCCCCce---eeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHH
Confidence 46999999999887544332 122322212222222322 2334445667777777777778899999999999
Q ss_pred HHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEEeC-----CCCCHhHHHH
Q 011060 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE-----LPNDPETFVH 173 (494)
Q Consensus 100 ~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~~~-----~P~~~~~y~q 173 (494)
.++.|.++|.+ ++++..+|+++..-+|.+++..+|.|.++|||.-+++-.|||+|.|.+|..+| +..+..+++|
T Consensus 458 mAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQ 537 (663)
T COG0556 458 MAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQ 537 (663)
T ss_pred HHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHH
Confidence 99999999996 89999999999999999999999999999999999999999999999999877 4578999999
Q ss_pred HhhccCcCCCCceEEEecChh
Q 011060 174 RSGRTGRAGKEGTAILMFTSS 194 (494)
Q Consensus 174 r~GR~gR~g~~g~~i~l~~~~ 194 (494)
-+|||+|- -.|.+|++...-
T Consensus 538 tIGRAARN-~~GkvIlYAD~i 557 (663)
T COG0556 538 TIGRAARN-VNGKVILYADKI 557 (663)
T ss_pred HHHHHhhc-cCCeEEEEchhh
Confidence 99999995 578999886553
No 98
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.58 E-value=1.1e-13 Score=132.37 Aligned_cols=177 Identities=19% Similarity=0.292 Sum_probs=123.6
Q ss_pred CCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHH------HHHHHHH-HHccCCe
Q 011060 18 PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT------ILSDLIT-VYAKGGK 90 (494)
Q Consensus 18 ~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~------~l~~ll~-~~~~~~~ 90 (494)
.++--+|.+|||.|+++++-+.+ .+-..+.+.. +.+.-+..+..+.+...+..++. .|...|+ ....+.+
T Consensus 231 k~~g~~IylTATp~k~l~r~~~~--g~~~~~klp~-RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P 307 (441)
T COG4098 231 KKEGATIYLTATPTKKLERKILK--GNLRILKLPA-RFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRP 307 (441)
T ss_pred cccCceEEEecCChHHHHHHhhh--CCeeEeecch-hhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCc
Confidence 45677999999999887665433 2222333322 22222333444444444443331 3344443 3345689
Q ss_pred EEEEeCChHHHHHHHHHHHcc---CcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEE-eC-CC
Q 011060 91 TIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH-YE-LP 165 (494)
Q Consensus 91 ~iVF~~t~~~~~~l~~~l~~~---~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~-~~-~P 165 (494)
++||+++.+..++++..|++. ..+..+|+. ...|.+.+++||+|+++|||+|.+++||+.+|+|+++|. .. .-
T Consensus 308 ~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~v 385 (441)
T COG4098 308 VLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRV 385 (441)
T ss_pred EEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCccc
Confidence 999999999999999999754 346788887 567889999999999999999999999999999998664 22 22
Q ss_pred CCHhHHHHHhhccCcCC--CCceEEEecChhhHHHH
Q 011060 166 NDPETFVHRSGRTGRAG--KEGTAILMFTSSQRRTV 199 (494)
Q Consensus 166 ~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e~~~~ 199 (494)
.+.++++|.+||+||.- ..|.++.|-.-....+.
T Consensus 386 fTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~ 421 (441)
T COG4098 386 FTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMK 421 (441)
T ss_pred ccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHHH
Confidence 58899999999999954 45787777554443333
No 99
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.58 E-value=2.1e-13 Score=149.91 Aligned_cols=187 Identities=18% Similarity=0.287 Sum_probs=144.7
Q ss_pred HHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHHHHHHccCCe
Q 011060 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGK 90 (494)
Q Consensus 11 ~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~ 90 (494)
++-++.+..+.-++-+|||+=+....++-.-+++-..|...+. . ...|+.+... .+...+-..++..+..+++
T Consensus 733 KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~--~--R~pV~T~V~~---~d~~~ireAI~REl~RgGQ 805 (1139)
T COG1197 733 KEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPE--D--RLPVKTFVSE---YDDLLIREAILRELLRGGQ 805 (1139)
T ss_pred HHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCC--C--CcceEEEEec---CChHHHHHHHHHHHhcCCE
Confidence 4556677778899999999877777777666777666654211 1 1223333322 2333334455666778999
Q ss_pred EEEEeCChHHHHHHHHHHHcc---CcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEEeCCC-C
Q 011060 91 TIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP-N 166 (494)
Q Consensus 91 ~iVF~~t~~~~~~l~~~l~~~---~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~~~~P-~ 166 (494)
+-...|..+..+.+++.|++. ..+.+.||.|+..+-++++.+|-+|+++|||||.+.+.|||||+++.+|..+.- .
T Consensus 806 vfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~f 885 (1139)
T COG1197 806 VFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKF 885 (1139)
T ss_pred EEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccc
Confidence 999999999999999999974 568899999999999999999999999999999999999999999988864432 3
Q ss_pred CHhHHHHHhhccCcCCCCceEEEecChh------hHHHHHHHHH
Q 011060 167 DPETFVHRSGRTGRAGKEGTAILMFTSS------QRRTVRSLER 204 (494)
Q Consensus 167 ~~~~y~qr~GR~gR~g~~g~~i~l~~~~------e~~~~~~l~~ 204 (494)
-.+++.|..||+||..+.+.||+++.+. ..++++.|++
T Consensus 886 GLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~ 929 (1139)
T COG1197 886 GLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIAS 929 (1139)
T ss_pred cHHHHHHhccccCCccceEEEEEeecCccccCHHHHHHHHHHHh
Confidence 5889999999999999999999998863 2355666655
No 100
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.56 E-value=1.4e-14 Score=114.23 Aligned_cols=80 Identities=53% Similarity=0.867 Sum_probs=74.4
Q ss_pred HHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcC
Q 011060 103 EVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 181 (494)
Q Consensus 103 ~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~ 181 (494)
.+++.|.. .+.+..+||++++++|..+++.|+++...|||+|+++++|+|+|.+++||.+++|++...|+|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 45566664 68899999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 011060 182 G 182 (494)
Q Consensus 182 g 182 (494)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 101
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.52 E-value=2.7e-13 Score=150.26 Aligned_cols=194 Identities=20% Similarity=0.332 Sum_probs=142.2
Q ss_pred HHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcC---------CccHHHHHHH
Q 011060 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT---------ATSKRTILSD 80 (494)
Q Consensus 10 l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~---------~~~k~~~l~~ 80 (494)
|..+++..+.+.|+|+.|||+.+.- ++++++......+.+. ....+....++.+..+ ..++...+..
T Consensus 222 L~~~~~~~~~~~q~i~~SAT~~np~-e~~~~l~~~~f~~~v~---~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~ 297 (851)
T COG1205 222 LLRRLRRYGSPLQIICTSATLANPG-EFAEELFGRDFEVPVD---EDGSPRGLRYFVRREPPIRELAESIRRSALAELAT 297 (851)
T ss_pred HHHHHhccCCCceEEEEeccccChH-HHHHHhcCCcceeecc---CCCCCCCceEEEEeCCcchhhhhhcccchHHHHHH
Confidence 3445555567899999999996653 4556666654444332 2222334444444444 2244555555
Q ss_pred HHHHH-ccCCeEEEEeCChHHHHHHHHHHH-----cc----CcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccccccc
Q 011060 81 LITVY-AKGGKTIVFTQTKRDADEVSLALT-----SI----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 150 (494)
Q Consensus 81 ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~-----~~----~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~G 150 (494)
++... ..+-++|+|+.+++.++.++.... .. ..+..+|++|..++|.+++..|++|+..++++|++++-|
T Consensus 298 ~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~Alelg 377 (851)
T COG1205 298 LAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELG 377 (851)
T ss_pred HHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhc
Confidence 55433 456799999999999999973332 23 358889999999999999999999999999999999999
Q ss_pred CCCCCccEEEEeCCCC-CHhHHHHHhhccCcCCCCceEEEecCh--hhHHHHHHHHHHhc
Q 011060 151 LDIPNVDLIIHYELPN-DPETFVHRSGRTGRAGKEGTAILMFTS--SQRRTVRSLERDVG 207 (494)
Q Consensus 151 idip~v~~VI~~~~P~-~~~~y~qr~GR~gR~g~~g~~i~l~~~--~e~~~~~~l~~~~~ 207 (494)
|||.+++.||.+..|. +..+++||+||+||.++....++++.. -+..++..-+....
T Consensus 378 idiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 378 IDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred eeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 9999999999999999 899999999999999877777766653 34455555555554
No 102
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.49 E-value=3e-13 Score=149.21 Aligned_cols=172 Identities=22% Similarity=0.237 Sum_probs=121.7
Q ss_pred CCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccH--HHHHHHHHHHHccCCeEEEEeCC
Q 011060 20 KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK--RTILSDLITVYAKGGKTIVFTQT 97 (494)
Q Consensus 20 ~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k--~~~l~~ll~~~~~~~~~iVF~~t 97 (494)
...+|+||||+|+...+....++.+...+.......................... ...+..+........+++|.|||
T Consensus 370 g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NT 449 (733)
T COG1203 370 GVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNT 449 (733)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEec
Confidence 6889999999999999988888776554433211000000000000100111111 13344445555677899999999
Q ss_pred hHHHHHHHHHHHccC-cEEEEeCCCCHHHHHHHHhhcc----CCcEEEEEecccccccCCCCCccEEEEeCCCCCHhHHH
Q 011060 98 KRDADEVSLALTSII-ASEALHGDISQHQRERTLNGFR----QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 172 (494)
Q Consensus 98 ~~~~~~l~~~l~~~~-~~~~lhg~~~~~~R~~~~~~F~----~g~~~iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~ 172 (494)
++.|.++++.|+... .+..+|+.+...+|.+.++.++ .....|+|||+|++.|+||. .+++|-= +..+++.+
T Consensus 450 V~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe--~aPidSLI 526 (733)
T COG1203 450 VDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITE--LAPIDSLI 526 (733)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeec--CCCHHHHH
Confidence 999999999999754 4999999999999988888554 46788999999999999994 7777753 35688999
Q ss_pred HHhhccCcCC--CCceEEEecChh
Q 011060 173 HRSGRTGRAG--KEGTAILMFTSS 194 (494)
Q Consensus 173 qr~GR~gR~g--~~g~~i~l~~~~ 194 (494)
||+||++|.| ..|..+++....
T Consensus 527 QR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 527 QRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred HHHHHHhhcccccCCceeEeeccc
Confidence 9999999999 567777765543
No 103
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.45 E-value=6.5e-13 Score=141.99 Aligned_cols=118 Identities=29% Similarity=0.474 Sum_probs=99.3
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcc---------------------------------------CcEEEEeCCCCHHHHH
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTSI---------------------------------------IASEALHGDISQHQRE 127 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~---------------------------------------~~~~~lhg~~~~~~R~ 127 (494)
++.++||||++++.|+.++..+... +.+.++|.+++.++|+
T Consensus 459 e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~ 538 (1008)
T KOG0950|consen 459 EGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEERE 538 (1008)
T ss_pred cCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHH
Confidence 3457999999999999888666421 2467889999999999
Q ss_pred HHHhhccCCcEEEEEecccccccCCCCCccEEEEe---C-CCCCHhHHHHHhhccCcCC--CCceEEEecChhhHHHHHH
Q 011060 128 RTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY---E-LPNDPETFVHRSGRTGRAG--KEGTAILMFTSSQRRTVRS 201 (494)
Q Consensus 128 ~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~~---~-~P~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e~~~~~~ 201 (494)
.+...|++|.+.|++||+.++.|+++|...++|-. . .+.+.-.|.||+|||||+| ..|.+|+++...+...+..
T Consensus 539 ~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~ 618 (1008)
T KOG0950|consen 539 IIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRE 618 (1008)
T ss_pred HHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHH
Confidence 99999999999999999999999999999988853 2 2347889999999999997 6689999999998766665
Q ss_pred HHH
Q 011060 202 LER 204 (494)
Q Consensus 202 l~~ 204 (494)
+.+
T Consensus 619 lv~ 621 (1008)
T KOG0950|consen 619 LVN 621 (1008)
T ss_pred HHh
Confidence 543
No 104
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=8.1e-13 Score=138.11 Aligned_cols=224 Identities=20% Similarity=0.282 Sum_probs=150.0
Q ss_pred CCcEEEEeecCChHHHHHH--HHHcCC-CcEEEeccccccccccceEEEEEEcCCccHHHHHHHHHHHHc--cCCeEEEE
Q 011060 20 KRQSMLFSATMPSWVKKLS--RKYLDN-PLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA--KGGKTIVF 94 (494)
Q Consensus 20 ~~q~il~SAT~~~~v~~~~--~~~~~~-~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~--~~~~~iVF 94 (494)
..++|+||||+ .|.++. +.++.. |..|.+..++. +-. .|+.-..+...-.++....+..+. +.+-+|||
T Consensus 414 pLKLIIMSATL--RVsDFtenk~LFpi~pPlikVdARQf---PVs-IHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVF 487 (1172)
T KOG0926|consen 414 PLKLIIMSATL--RVSDFTENKRLFPIPPPLIKVDARQF---PVS-IHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVF 487 (1172)
T ss_pred ceeEEEEeeeE--EecccccCceecCCCCceeeeecccC---ceE-EEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEE
Confidence 46789999999 333333 223332 34454432221 111 233333444444555555555443 56899999
Q ss_pred eCChHHHHHHHHHHHccC--------------------------------------------------------------
Q 011060 95 TQTKRDADEVSLALTSII-------------------------------------------------------------- 112 (494)
Q Consensus 95 ~~t~~~~~~l~~~l~~~~-------------------------------------------------------------- 112 (494)
+....++++|++.|++.+
T Consensus 488 vTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa 567 (1172)
T KOG0926|consen 488 VTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAA 567 (1172)
T ss_pred EeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhh
Confidence 999999999999987531
Q ss_pred --------------------------------------cEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCC
Q 011060 113 --------------------------------------ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (494)
Q Consensus 113 --------------------------------------~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip 154 (494)
.|.+|++-|+.+++.++++.-..|..-++|||+||+..|.||
T Consensus 568 ~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIP 647 (1172)
T KOG0926|consen 568 FNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIP 647 (1172)
T ss_pred hhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccC
Confidence 245567788999999999999999999999999999999999
Q ss_pred CccEEEEeCCC--------C----------CHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccCCC
Q 011060 155 NVDLIIHYELP--------N----------DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (494)
Q Consensus 155 ~v~~VI~~~~P--------~----------~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (494)
+|.+||+.+.- . +..+--||+|||||.| +|+||.||+..-.. ..|+. -
T Consensus 648 gIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSAVf~----------~~Fe~---f 713 (1172)
T KOG0926|consen 648 GIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSAVFS----------NDFEE---F 713 (1172)
T ss_pred CeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhHHhh----------cchhh---h
Confidence 99999965432 1 4556689999999997 89999999874321 11222 2
Q ss_pred ChHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHc
Q 011060 217 VVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 268 (494)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l~ 268 (494)
+..|+++.-.+.++..++.++...+..| .+-..++..+|.+|.-.|.
T Consensus 714 S~PEIlk~Pve~lvLqMKsMnI~kVvnF-----PFPtpPd~~~L~~Aer~L~ 760 (1172)
T KOG0926|consen 714 SLPEILKKPVESLVLQMKSMNIDKVVNF-----PFPTPPDRSALEKAERRLK 760 (1172)
T ss_pred ccHHHhhCcHHHHHHHHHhcCccceecC-----CCCCCccHHHHHHHHHHHH
Confidence 3467778888888888888776655544 1222334455555554443
No 105
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.43 E-value=2.4e-12 Score=139.76 Aligned_cols=167 Identities=20% Similarity=0.182 Sum_probs=128.2
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEE-EEEEcCCccHHHHHHHHHHH-HccCCeEEEEeCChH
Q 011060 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKR 99 (494)
Q Consensus 22 q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~-~~~~~~~iVF~~t~~ 99 (494)
++..||.|...+..++.+.|--+. +.+. .+.+.....+ -.+......|..++...+.. +..+.++||||+|++
T Consensus 367 kl~GmTGTa~te~~E~~~iY~l~v--v~IP---tnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~ 441 (830)
T PRK12904 367 KLAGMTGTADTEAEEFREIYNLDV--VVIP---TNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIE 441 (830)
T ss_pred hhcccCCCcHHHHHHHHHHhCCCE--EEcC---CCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 455688998777666666664332 2222 1111111111 12223445677777776644 456789999999999
Q ss_pred HHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCc----------------------
Q 011060 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV---------------------- 156 (494)
Q Consensus 100 ~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v---------------------- 156 (494)
.++.|++.|.+ ++++..||+. +.+|+..+.+|+.+...|+||||+|+||+||+-=
T Consensus 442 ~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~ 519 (830)
T PRK12904 442 KSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKI 519 (830)
T ss_pred HHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHH
Confidence 99999999985 7999999996 8899999999999999999999999999999742
Q ss_pred ----------------cEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhh
Q 011060 157 ----------------DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 157 ----------------~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (494)
=|||-...|.|..---|-.||+||.|.+|.+-++++-.|
T Consensus 520 ~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 520 KAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred HHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 278888899999999999999999999999999988765
No 106
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.42 E-value=1.9e-12 Score=140.72 Aligned_cols=168 Identities=18% Similarity=0.173 Sum_probs=125.2
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHH-HHHHHHHccCCeEEEEeCChHH
Q 011060 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL-SDLITVYAKGGKTIVFTQTKRD 100 (494)
Q Consensus 22 q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l-~~ll~~~~~~~~~iVF~~t~~~ 100 (494)
++--||.|...+..++.+-|--+. +.+.. ..+.......- .+......|..++ ..+.+.+..+.++||||+|++.
T Consensus 381 kLsGMTGTa~te~~Ef~~iY~l~V--v~IPt-nkp~~R~d~~d-~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~ 456 (896)
T PRK13104 381 KLSGMTGTADTEAYEFQQIYNLEV--VVIPT-NRSMIRKDEAD-LVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEA 456 (896)
T ss_pred hhccCCCCChhHHHHHHHHhCCCE--EECCC-CCCcceecCCC-eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHH
Confidence 344688888777666666654332 22221 11111111111 1222334555544 4455556778899999999999
Q ss_pred HHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCC------------------------
Q 011060 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN------------------------ 155 (494)
Q Consensus 101 ~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~------------------------ 155 (494)
++.|+..|.+ ++++..||+.+.+.+++.+.++|+.|. |+||||+|+||+||.=
T Consensus 457 sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~ 534 (896)
T PRK13104 457 SEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVK 534 (896)
T ss_pred HHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHH
Confidence 9999999985 899999999999999999999999995 9999999999999961
Q ss_pred ---------c-----cEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhh
Q 011060 156 ---------V-----DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 156 ---------v-----~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (494)
| =|||-...+.|..-=-|-.||+||.|.+|.+-+|++-.|
T Consensus 535 ~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 535 KEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred HHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 1 168888888888888999999999999999999988765
No 107
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.42 E-value=1.4e-11 Score=124.57 Aligned_cols=223 Identities=17% Similarity=0.196 Sum_probs=155.2
Q ss_pred CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCc---------cHHHHHHHHH-HHHccC
Q 011060 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT---------SKRTILSDLI-TVYAKG 88 (494)
Q Consensus 19 ~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~---------~k~~~l~~ll-~~~~~~ 88 (494)
.+.|++-.|||+...++.....+--+ .++++... -.+..-+++.++.+.. .+.....+++ +....+
T Consensus 450 ~~~~~~~~~~~~K~~~~~~~~~~~~~--E~~Li~~D--GSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~ 525 (1034)
T KOG4150|consen 450 INMGVYDGDTPYKDRTRLRSELANLS--ELELVTID--GSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHG 525 (1034)
T ss_pred cCcceEeCCCCcCCHHHHHHHhcCCc--ceEEEEec--CCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcC
Confidence 47899999999987776554433223 33333211 1233445666655431 1222222232 333456
Q ss_pred CeEEEEeCChHHHHHHHHHHHccC---------cEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEE
Q 011060 89 GKTIVFTQTKRDADEVSLALTSII---------ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~~~---------~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~V 159 (494)
-++|-||++++.|+.+....++.+ .+..+.|+.+.++|.++...+-.|+..-+|||++++.||||..++.|
T Consensus 526 ~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAV 605 (1034)
T KOG4150|consen 526 LRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAV 605 (1034)
T ss_pred CcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeE
Confidence 799999999999998876665421 35678899999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHhHHHHHhhccCcCCCCceEEEec--ChhhHHHHHHHHHHhcCCccccCCCChHH-HHHHHHHHHHHHhccC
Q 011060 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMF--TSSQRRTVRSLERDVGCKFEFVSPPVVED-VLESSAEQVVATLNGV 236 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~--~~~e~~~~~~l~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~l~~~ 236 (494)
++.++|.+...+.|..||+||-+++..+++++ .|-+..++..-+..+..+-.++.+...++ ++..+++-...+|.-.
T Consensus 606 l~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~LD~~N~~iL~~HlQCAA~ELPIN 685 (1034)
T KOG4150|consen 606 LHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEELHLDSQNKHVLMQHLQCAALELPIN 685 (1034)
T ss_pred EEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcceeEEecccHHHHHHHHhHHhhcCccc
Confidence 99999999999999999999999887766654 46677777777777766655555554443 4555555554455443
Q ss_pred CccchhhhH
Q 011060 237 HPESVEFFT 245 (494)
Q Consensus 237 ~~~~~~~~~ 245 (494)
...+..+|.
T Consensus 686 ~~~D~q~Fg 694 (1034)
T KOG4150|consen 686 LQYDQQHFG 694 (1034)
T ss_pred cchhhhhcc
Confidence 334444443
No 108
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.42 E-value=5.1e-12 Score=137.10 Aligned_cols=167 Identities=20% Similarity=0.223 Sum_probs=125.2
Q ss_pred EEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEE-EEEcCCccHHH-HHHHHHHHHccCCeEEEEeCChHH
Q 011060 23 SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLY-AISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKRD 100 (494)
Q Consensus 23 ~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~-~~~~~~~~k~~-~l~~ll~~~~~~~~~iVF~~t~~~ 100 (494)
+--||.|...+..++.+.|--+. +.+. .+.+.....+- .+......|.. ++..+.+.+..+.++||||+|++.
T Consensus 387 L~GMTGTa~te~~Ef~~iY~l~V--v~IP---Tnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~ 461 (908)
T PRK13107 387 LAGMTGTADTEAFEFQHIYGLDT--VVVP---TNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQ 461 (908)
T ss_pred hhcccCCChHHHHHHHHHhCCCE--EECC---CCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHH
Confidence 44578888776666666554332 2222 11111111111 11122234544 445555666778899999999999
Q ss_pred HHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCC------------------------
Q 011060 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN------------------------ 155 (494)
Q Consensus 101 ~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~------------------------ 155 (494)
++.++..|.. ++++..||+++++.+++.+.++|+.|. |+||||+|+||+||.=
T Consensus 462 se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~ 539 (908)
T PRK13107 462 SELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKA 539 (908)
T ss_pred HHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHH
Confidence 9999999985 899999999999999999999999998 9999999999999961
Q ss_pred --------c-----cEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhH
Q 011060 156 --------V-----DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 156 --------v-----~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (494)
| =|||-...+.|..-=-|-.||+||.|.+|.+.+|++-.|.
T Consensus 540 ~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 540 DWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 1 2788888899998999999999999999999999887653
No 109
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.40 E-value=9.3e-12 Score=132.57 Aligned_cols=117 Identities=29% Similarity=0.396 Sum_probs=94.6
Q ss_pred HHHHHHHHcc--CCeEEEEeCChHHHHHHHHHHHcc-C---------------------------------------cEE
Q 011060 78 LSDLITVYAK--GGKTIVFTQTKRDADEVSLALTSI-I---------------------------------------ASE 115 (494)
Q Consensus 78 l~~ll~~~~~--~~~~iVF~~t~~~~~~l~~~l~~~-~---------------------------------------~~~ 115 (494)
+.+++..+.+ --++||||=+++.|++.++.|... + .+.
T Consensus 555 ~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGia 634 (1248)
T KOG0947|consen 555 WLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIA 634 (1248)
T ss_pred HHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcch
Confidence 4445544432 248999999999999999998641 0 366
Q ss_pred EEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEEeC--------CCCCHhHHHHHhhccCcCC--CCc
Q 011060 116 ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE--------LPNDPETFVHRSGRTGRAG--KEG 185 (494)
Q Consensus 116 ~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~~~--------~P~~~~~y~qr~GR~gR~g--~~g 185 (494)
++||++-+--++-+..-|..|-++||+||..++.|+|.|.-++|+.-= .-..+-.|.||+|||||-| .+|
T Consensus 635 VHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tG 714 (1248)
T KOG0947|consen 635 VHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETG 714 (1248)
T ss_pred hhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCc
Confidence 789999999999999999999999999999999999999988887411 1235789999999999988 778
Q ss_pred eEEEecChh
Q 011060 186 TAILMFTSS 194 (494)
Q Consensus 186 ~~i~l~~~~ 194 (494)
++|++....
T Consensus 715 TVii~~~~~ 723 (1248)
T KOG0947|consen 715 TVIIMCKDS 723 (1248)
T ss_pred eEEEEecCC
Confidence 988887654
No 110
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.38 E-value=1.2e-11 Score=134.68 Aligned_cols=178 Identities=21% Similarity=0.336 Sum_probs=124.8
Q ss_pred CCCcEEEEeecCChHHHHHHHHHcC-CCcEEEeccccccccccceEEEEEEcCCcc--H-HH-----HHHHHHHHHccCC
Q 011060 19 PKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATS--K-RT-----ILSDLITVYAKGG 89 (494)
Q Consensus 19 ~~~q~il~SAT~~~~v~~~~~~~~~-~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~--k-~~-----~l~~ll~~~~~~~ 89 (494)
...+++-+|||+|+-. +.+ .|+. ++.-+-.....-. +-.+.+.++-+.... + .+ ...++++...+ .
T Consensus 473 e~~RlVGLSATLPNy~-DV~-~Fl~v~~~glf~fd~syR--pvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk-~ 547 (1674)
T KOG0951|consen 473 EGSRLVGLSATLPNYE-DVA-SFLRVDPEGLFYFDSSYR--PVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGK-N 547 (1674)
T ss_pred cCceeeeecccCCchh-hhH-HHhccCcccccccCcccC--cCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCC-C
Confidence 4688999999999842 222 2333 4432222211111 223445555444332 2 22 23444544444 8
Q ss_pred eEEEEeCChHHHHHHHHHHHcc--------------------------------------CcEEEEeCCCCHHHHHHHHh
Q 011060 90 KTIVFTQTKRDADEVSLALTSI--------------------------------------IASEALHGDISQHQRERTLN 131 (494)
Q Consensus 90 ~~iVF~~t~~~~~~l~~~l~~~--------------------------------------~~~~~lhg~~~~~~R~~~~~ 131 (494)
++|||+-+|+++.+.|..++.. +.+..+|++|+..+|+.+.+
T Consensus 548 qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~Ed 627 (1674)
T KOG0951|consen 548 QVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVED 627 (1674)
T ss_pred cEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHH
Confidence 9999999999988888777621 34778999999999999999
Q ss_pred hccCCcEEEEEecccccccCCCCCccEEE----EeCC------CCCHhHHHHHhhccCcCC--CCceEEEecChhhHHHH
Q 011060 132 GFRQGKFTVLVATDVAARGLDIPNVDLII----HYEL------PNDPETFVHRSGRTGRAG--KEGTAILMFTSSQRRTV 199 (494)
Q Consensus 132 ~F~~g~~~iLVaTd~~~~Gidip~v~~VI----~~~~------P~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e~~~~ 199 (494)
.|++|.++|||+|-.+++|+++|.-+++| .|++ +.++.+.+||.||+||.+ ..|..+++....|..+.
T Consensus 628 Lf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyy 707 (1674)
T KOG0951|consen 628 LFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYY 707 (1674)
T ss_pred HHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhh
Confidence 99999999999999999999999888777 3664 457899999999999976 56777777766665544
Q ss_pred HH
Q 011060 200 RS 201 (494)
Q Consensus 200 ~~ 201 (494)
..
T Consensus 708 ls 709 (1674)
T KOG0951|consen 708 LS 709 (1674)
T ss_pred HH
Confidence 44
No 111
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.35 E-value=4.4e-11 Score=128.88 Aligned_cols=173 Identities=19% Similarity=0.342 Sum_probs=119.6
Q ss_pred CCCcEEEEeecCChHHHHHHHHHcC-CCcE-E-EeccccccccccceEEEEEEcCCc---cHH-----HHHHHHHHHHcc
Q 011060 19 PKRQSMLFSATMPSWVKKLSRKYLD-NPLN-I-DLVGNQDEKLAEGIKLYAISTTAT---SKR-----TILSDLITVYAK 87 (494)
Q Consensus 19 ~~~q~il~SAT~~~~v~~~~~~~~~-~~~~-v-~~~~~~~~~~~~~i~~~~~~~~~~---~k~-----~~l~~ll~~~~~ 87 (494)
...++|.+|||+|+ ..+++. ||+ +|.. + .+.. .-. +-.+.+.++-.+.. ... .....+++.+..
T Consensus 274 s~IRivgLSATlPN-~eDvA~-fL~vn~~~glfsFd~-~yR--PvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~ 348 (1230)
T KOG0952|consen 274 SMIRIVGLSATLPN-YEDVAR-FLRVNPYAGLFSFDQ-RYR--PVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQE 348 (1230)
T ss_pred hheEEEEeeccCCC-HHHHHH-HhcCCCccceeeecc-ccc--ccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHc
Confidence 56789999999987 455554 555 4321 2 2211 111 11222333322222 111 223455666677
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc------------------------CcEEEEeCCCCHHHHHHHHhhccCCcEEEEEe
Q 011060 88 GGKTIVFTQTKRDADEVSLALTSI------------------------IASEALHGDISQHQRERTLNGFRQGKFTVLVA 143 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~------------------------~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVa 143 (494)
+.+++|||.++..+...|+.|.+. .....+|++|..++|..+.+.|..|-++||+|
T Consensus 349 g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~c 428 (1230)
T KOG0952|consen 349 GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCC 428 (1230)
T ss_pred CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEe
Confidence 899999999999999999888631 12456899999999999999999999999999
Q ss_pred cccccccCCCCCccEEE----EeCCCC------CHhHHHHHhhccCcCC--CCceEEEecChhhH
Q 011060 144 TDVAARGLDIPNVDLII----HYELPN------DPETFVHRSGRTGRAG--KEGTAILMFTSSQR 196 (494)
Q Consensus 144 Td~~~~Gidip~v~~VI----~~~~P~------~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e~ 196 (494)
|..++.|+++|+--++| .||.-. ..-+.+|..|||||.. ..|.++++.+....
T Consensus 429 TaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl 493 (1230)
T KOG0952|consen 429 TATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKL 493 (1230)
T ss_pred cceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHH
Confidence 99999999999744444 233322 4667899999999965 77888888776443
No 112
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.31 E-value=2.2e-11 Score=136.20 Aligned_cols=135 Identities=18% Similarity=0.364 Sum_probs=111.3
Q ss_pred ccHHHHHHHHHHHHc-cCCeEEEEeCChHHHHHHHHHHH-ccCcEEEEeCCCCHHHHHHHHhhccCC---cEEEEEeccc
Q 011060 72 TSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQG---KFTVLVATDV 146 (494)
Q Consensus 72 ~~k~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~F~~g---~~~iLVaTd~ 146 (494)
..|+.+|..+|..+. .+.++|||+......+.|.+.|. .++....+||.++..+|..+++.|... ..-+|++|.+
T Consensus 470 SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrA 549 (1033)
T PLN03142 470 SGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRA 549 (1033)
T ss_pred hhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccc
Confidence 467778888886653 46799999999999999999987 478999999999999999999999753 3567999999
Q ss_pred ccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCce--EEEecChh--hHHHHHHHHHHh
Q 011060 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGT--AILMFTSS--QRRTVRSLERDV 206 (494)
Q Consensus 147 ~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~--~i~l~~~~--e~~~~~~l~~~~ 206 (494)
.+.|||+..+++||+||+||++..+.|+++|+.|.|++-. +|.|++.. |...+....+.+
T Consensus 550 GGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl 613 (1033)
T PLN03142 550 GGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKL 613 (1033)
T ss_pred cccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997654 44455543 444555444443
No 113
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.24 E-value=7.5e-11 Score=123.03 Aligned_cols=93 Identities=33% Similarity=0.563 Sum_probs=88.6
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEEeCCC
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP 165 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~~~~P 165 (494)
.+.++||||.++.+++.++..+.. .+ +..+.++.++.+|+.++++|+.+.+++||++.++..|+|+|+++++|...+.
T Consensus 282 ~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t 360 (442)
T COG1061 282 RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPT 360 (442)
T ss_pred CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCC
Confidence 457999999999999999999985 45 8899999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHhhccCc
Q 011060 166 NDPETFVHRSGRTGR 180 (494)
Q Consensus 166 ~~~~~y~qr~GR~gR 180 (494)
.+...|+||+||.-|
T Consensus 361 ~S~~~~~Q~lGR~LR 375 (442)
T COG1061 361 GSRRLFIQRLGRGLR 375 (442)
T ss_pred CcHHHHHHHhhhhcc
Confidence 999999999999999
No 114
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.21 E-value=8.3e-10 Score=125.80 Aligned_cols=92 Identities=23% Similarity=0.441 Sum_probs=81.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc-------C---cEEEEeCCCCHHHHHHHHhhccCCcE-EEEEecccccccCCCCCc
Q 011060 88 GGKTIVFTQTKRDADEVSLALTSI-------I---ASEALHGDISQHQRERTLNGFRQGKF-TVLVATDVAARGLDIPNV 156 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~-------~---~~~~lhg~~~~~~R~~~~~~F~~g~~-~iLVaTd~~~~Gidip~v 156 (494)
+.++||||.++++|+.+++.|.+. + .+..+||+++ ++.+++++|+++.. +|||+++++.+|+|+|.|
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v 775 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSI 775 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccc
Confidence 369999999999999998887642 1 4567899975 46789999999887 699999999999999999
Q ss_pred cEEEEeCCCCCHhHHHHHhhccCcC
Q 011060 157 DLIIHYELPNDPETFVHRSGRTGRA 181 (494)
Q Consensus 157 ~~VI~~~~P~~~~~y~qr~GR~gR~ 181 (494)
++||.++++.|...|+||+||+.|.
T Consensus 776 ~~vVf~rpvkS~~lf~QmIGRgtR~ 800 (1123)
T PRK11448 776 CNLVFLRRVRSRILYEQMLGRATRL 800 (1123)
T ss_pred cEEEEecCCCCHHHHHHHHhhhccC
Confidence 9999999999999999999999995
No 115
>PF08152 GUCT: GUCT (NUC152) domain; InterPro: IPR012562 This is the C-terminal domain found in the RNA helicase II / Gu protein family [].; GO: 0003723 RNA binding, 0004386 helicase activity, 0005524 ATP binding, 0005634 nucleus; PDB: 2E29_A.
Probab=99.20 E-value=2.3e-11 Score=98.67 Aligned_cols=95 Identities=38% Similarity=0.563 Sum_probs=52.3
Q ss_pred CCCCCCCCcccccCCCCceEEEeecCcccccCCCChhHHHHHhhhhcCC-CcCccccEEEeecCceeeEEeecCHHHHHH
Q 011060 269 GFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPT-AADEIGKIHIIADDRVQGAVFDLPEEIAKE 347 (494)
Q Consensus 269 ~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~~~~ig~i~i~~~~~~~gs~fdvp~~~a~~ 347 (494)
|+++ ++.|||+++.++++|+.+....+ .-++..++..|.+..+. ..+.|++|.++++. +|++||||++.+++
T Consensus 1 G~t~-~~~RSLLt~~~g~vTl~l~~~~~----i~~~~y~~~~L~~~L~e~~~~~v~~m~l~~d~--~GavFDvP~~~~~~ 73 (97)
T PF08152_consen 1 GYTE-IKQRSLLTSEEGFVTLQLTCSRE----IRSPGYAWRILRRQLSEEIADKVKGMTLLKDK--MGAVFDVPSEIAEE 73 (97)
T ss_dssp S-S--------------EEEEEEE-SS------SSTHHHHHHHHHHS-HHHHTT-EEEEE-TTS--SEEEEEEEHHHHHH
T ss_pred CCCC-CCccccccCCCCCEEEEEEcCCc----CCCchhHHHHHHHhcCHHHHHhhCcEEEecCC--CEEEEEChHHHHHH
Confidence 3456 78899999999999999988864 34677777777776653 56779999999986 69999999999999
Q ss_pred HHhhcCCC-CCceEeeccCCCCCC
Q 011060 348 LLNKQIPP-GNTISKITKLPALQD 370 (494)
Q Consensus 348 ~~~~~~~~-~~~i~~~~~lP~l~~ 370 (494)
+++.+.+. +++++++++||++++
T Consensus 74 ~~~~~~~~~~~~l~v~~~LPeL~e 97 (97)
T PF08152_consen 74 FLAKWEDSRGWQLSVATELPELQE 97 (97)
T ss_dssp HHHH--SS-S-EEE----------
T ss_pred HHHhCcccCCcEEEEcccCcCccC
Confidence 99998885 899999999999974
No 116
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.17 E-value=1.4e-10 Score=121.03 Aligned_cols=107 Identities=24% Similarity=0.419 Sum_probs=89.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc-C---------------------------------------cEEEEeCCCCHHHHH
Q 011060 88 GGKTIVFTQTKRDADEVSLALTSI-I---------------------------------------ASEALHGDISQHQRE 127 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~-~---------------------------------------~~~~lhg~~~~~~R~ 127 (494)
..++|||+=++++|+.+|..+.+. + .+.++|++|-+--++
T Consensus 383 ~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE 462 (1041)
T KOG0948|consen 383 YLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKE 462 (1041)
T ss_pred CCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHH
Confidence 358999999999999999888641 1 255789999999999
Q ss_pred HHHhhccCCcEEEEEecccccccCCCCCccEEEE----eCC---C-CCHhHHHHHhhccCcCC--CCceEEEecChh
Q 011060 128 RTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YEL---P-NDPETFVHRSGRTGRAG--KEGTAILMFTSS 194 (494)
Q Consensus 128 ~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~----~~~---P-~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~ 194 (494)
.+.--|.+|-+++|+||..++.|+|.|.-++|+- ||- - .+.-.|+||+|||||-| ..|.||++++..
T Consensus 463 ~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 463 VIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred HHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 9999999999999999999999999999888773 221 1 25678999999999988 568999998753
No 117
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.97 E-value=1.4e-08 Score=109.68 Aligned_cols=193 Identities=18% Similarity=0.315 Sum_probs=128.8
Q ss_pred HHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccH-----HHHHHHH
Q 011060 7 EEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK-----RTILSDL 81 (494)
Q Consensus 7 ~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k-----~~~l~~l 81 (494)
..||-....+. .+.++||-|||..-+-...++. .....+.+..+......+.+....+....... ..++..+
T Consensus 337 ARdvA~~Ra~~-~~~pvvLgSATPSLES~~~~~~--g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i 413 (730)
T COG1198 337 ARDVAVLRAKK-ENAPVVLGSATPSLESYANAES--GKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAI 413 (730)
T ss_pred HHHHHHHHHHH-hCCCEEEecCCCCHHHHHhhhc--CceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHH
Confidence 34454444443 5899999999996664444421 12234444433332223334333332222222 4556666
Q ss_pred HHHHccCCeEEEEeCChH------------------------------------------------------------HH
Q 011060 82 ITVYAKGGKTIVFTQTKR------------------------------------------------------------DA 101 (494)
Q Consensus 82 l~~~~~~~~~iVF~~t~~------------------------------------------------------------~~ 101 (494)
-+.+..+.++|||.|.+- -+
T Consensus 414 ~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gt 493 (730)
T COG1198 414 RKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGT 493 (730)
T ss_pred HHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccH
Confidence 666778899999988876 45
Q ss_pred HHHHHHHHcc---CcEEEEeCCCCHHH--HHHHHhhccCCcEEEEEecccccccCCCCCccEEEEeCC------CC----
Q 011060 102 DEVSLALTSI---IASEALHGDISQHQ--RERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL------PN---- 166 (494)
Q Consensus 102 ~~l~~~l~~~---~~~~~lhg~~~~~~--R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~~~~------P~---- 166 (494)
+++.+.|.+. .++..+.++.+... -+..++.|.+|+.+|||.|++++.|.|+|+|++|...|. |.
T Consensus 494 erieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~ 573 (730)
T COG1198 494 ERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRAS 573 (730)
T ss_pred HHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchH
Confidence 6677777653 46777888876543 467899999999999999999999999999998764432 21
Q ss_pred --CHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHH
Q 011060 167 --DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 167 --~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l 202 (494)
....+.|-+||+||.+++|.+++-....+...++.+
T Consensus 574 Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~ 611 (730)
T COG1198 574 ERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQAL 611 (730)
T ss_pred HHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHH
Confidence 234568999999999999999988666665555554
No 118
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.92 E-value=3.6e-08 Score=109.12 Aligned_cols=105 Identities=25% Similarity=0.433 Sum_probs=86.6
Q ss_pred CeEEEEeCChHHHHHHHHHHHcc-----------------------------C-------------cEEEEeCCCCHHHH
Q 011060 89 GKTIVFTQTKRDADEVSLALTSI-----------------------------I-------------ASEALHGDISQHQR 126 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~~-----------------------------~-------------~~~~lhg~~~~~~R 126 (494)
-++|+|+-++..|+..+..+... + .+.++|++|-+..+
T Consensus 380 lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K 459 (1041)
T COG4581 380 LPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIK 459 (1041)
T ss_pred CceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHH
Confidence 58999999999999887776510 1 13367999999999
Q ss_pred HHHHhhccCCcEEEEEecccccccCCCCCccEEEE----eC----CCCCHhHHHHHhhccCcCC--CCceEEEecCh
Q 011060 127 ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE----LPNDPETFVHRSGRTGRAG--KEGTAILMFTS 193 (494)
Q Consensus 127 ~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~----~~----~P~~~~~y~qr~GR~gR~g--~~g~~i~l~~~ 193 (494)
..+...|..|-++||+||.+++.|||+|.-++|+- +| -+-++..|+|++||+||.| ..|.+|++-.+
T Consensus 460 ~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 460 ELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred HHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 99999999999999999999999999998887762 22 3457899999999999988 56888887443
No 119
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.91 E-value=5.5e-08 Score=105.32 Aligned_cols=167 Identities=17% Similarity=0.158 Sum_probs=113.3
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEE-EEEcCCccHHHH-HHHHHHHHccCCeEEEEeCChH
Q 011060 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLY-AISTTATSKRTI-LSDLITVYAKGGKTIVFTQTKR 99 (494)
Q Consensus 22 q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~-~~~~~~~~k~~~-l~~ll~~~~~~~~~iVF~~t~~ 99 (494)
++--||.|...+..++.+-|--+. +.+. .+.+.....+- .+......|..+ +..+.+.+.++.++||.|.|.+
T Consensus 363 kLsGMTGTA~te~~Ef~~iY~l~V--v~IP---TnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe 437 (925)
T PRK12903 363 KLSGMTGTAKTEEQEFIDIYNMRV--NVVP---TNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVE 437 (925)
T ss_pred hhhccCCCCHHHHHHHHHHhCCCE--EECC---CCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 345678887666666665553322 2221 11111111110 112233345444 4445556677889999999999
Q ss_pred HHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCcc--------EEEEeCCCCCHhH
Q 011060 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD--------LIIHYELPNDPET 170 (494)
Q Consensus 100 ~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~--------~VI~~~~P~~~~~ 170 (494)
..+.|+..|.+ +++..+|++.-...+-+.+-++=+ .-.|.|||++|.||.||.--. |||....|.+..-
T Consensus 438 ~SE~ls~~L~~~gi~h~vLNAk~~e~EA~IIa~AG~--~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRI 515 (925)
T PRK12903 438 DSETLHELLLEANIPHTVLNAKQNAREAEIIAKAGQ--KGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRI 515 (925)
T ss_pred HHHHHHHHHHHCCCCceeecccchhhHHHHHHhCCC--CCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHH
Confidence 99999999985 789889988733333333322222 346999999999999996322 8999999999988
Q ss_pred HHHHhhccCcCCCCceEEEecChhh
Q 011060 171 FVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 171 y~qr~GR~gR~g~~g~~i~l~~~~e 195 (494)
--|..||+||.|.+|.+-.+++-.|
T Consensus 516 DnQLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 516 DNQLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred HHHHhcccccCCCCCcceEEEecch
Confidence 8999999999999999998888655
No 120
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.88 E-value=1e-08 Score=104.31 Aligned_cols=126 Identities=23% Similarity=0.334 Sum_probs=92.7
Q ss_pred HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc--cCcEEEEeCCCCHHHHHHHHhhccC--CcEEEEEecccccccCCCC
Q 011060 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQ--GKFTVLVATDVAARGLDIP 154 (494)
Q Consensus 79 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~R~~~~~~F~~--g~~~iLVaTd~~~~Gidip 154 (494)
..-++.+. ++.|||-. +++.+-.+...+.+ ...+.+++|+||++.|......|.+ ++++||||||++.+|+|+
T Consensus 349 ~~sl~nlk-~GDCvV~F-Skk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL- 425 (700)
T KOG0953|consen 349 LGSLSNLK-PGDCVVAF-SKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL- 425 (700)
T ss_pred hhhhccCC-CCCeEEEe-ehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-
Confidence 33344443 35555533 56777788888875 3569999999999999999999987 889999999999999999
Q ss_pred CccEEEEeCC---------CCCHhHHHHHhhccCcCC---CCceEEEecChhhHHHHHHHHHHhcCCcc
Q 011060 155 NVDLIIHYEL---------PNDPETFVHRSGRTGRAG---KEGTAILMFTSSQRRTVRSLERDVGCKFE 211 (494)
Q Consensus 155 ~v~~VI~~~~---------P~~~~~y~qr~GR~gR~g---~~g~~i~l~~~~e~~~~~~l~~~~~~~~~ 211 (494)
+++-||.|++ |.+..+..|-+|||||.| ..|.+.++..+ + +..|.+.+..+++
T Consensus 426 ~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~e-D---L~~L~~~l~~p~e 490 (700)
T KOG0953|consen 426 NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSE-D---LKLLKRILKRPVE 490 (700)
T ss_pred ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHh-h---HHHHHHHHhCCch
Confidence 6788887764 457888999999999987 34666666543 3 4444444444443
No 121
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.87 E-value=4.8e-08 Score=104.29 Aligned_cols=169 Identities=19% Similarity=0.174 Sum_probs=117.3
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHH-HHHHHHHHHccCCeEEEEeCChHH
Q 011060 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKRD 100 (494)
Q Consensus 22 q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~l~~ll~~~~~~~~~iVF~~t~~~ 100 (494)
.+--||.|...+..++.+-|--+ ++.+... .+..........+ .....|.. ++..+.+.+..+.++||.|.+.+.
T Consensus 364 kLsGMTGTa~t~~~Ef~~iY~l~--Vv~IPtn-kp~~R~d~~d~iy-~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~ 439 (764)
T PRK12326 364 TVCGMTGTAVAAGEQLRQFYDLG--VSVIPPN-KPNIREDEADRVY-ATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAE 439 (764)
T ss_pred hheeecCCChhHHHHHHHHhCCc--EEECCCC-CCceeecCCCceE-eCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHH
Confidence 46678999977777766666433 2222211 1111111111112 22334544 445555666788999999999999
Q ss_pred HHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCC----------c-----cEEEEeCC
Q 011060 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN----------V-----DLIIHYEL 164 (494)
Q Consensus 101 ~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~----------v-----~~VI~~~~ 164 (494)
.+.|+..|.+ +++..+|++.-...+-+.+-++=+. -.|.|||++|.||.||.- | =|||-...
T Consensus 440 SE~ls~~L~~~gI~h~vLNAk~~~~EA~IIa~AG~~--gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTer 517 (764)
T PRK12326 440 SEELAERLRAAGVPAVVLNAKNDAEEARIIAEAGKY--GAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGR 517 (764)
T ss_pred HHHHHHHHHhCCCcceeeccCchHhHHHHHHhcCCC--CcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccC
Confidence 9999999986 7899999887444443333333333 359999999999999962 2 27999999
Q ss_pred CCCHhHHHHHhhccCcCCCCceEEEecChhhH
Q 011060 165 PNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 165 P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (494)
|.+...--|-.||+||.|.+|.+.+|++-.|.
T Consensus 518 heSrRID~QLrGRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 518 HRSERLDNQLRGRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred CchHHHHHHHhcccccCCCCCceeEEEEcchh
Confidence 99999999999999999999999999887663
No 122
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.75 E-value=1.8e-07 Score=102.42 Aligned_cols=168 Identities=18% Similarity=0.161 Sum_probs=115.3
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHH-HHHHHHHHHccCCeEEEEeCChHH
Q 011060 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKRD 100 (494)
Q Consensus 22 q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~l~~ll~~~~~~~~~iVF~~t~~~ 100 (494)
++..||.|.-.+..++.+.|--+ ++.+... .+.......-. +......|.. ++..+.+.+..+.++||-|.+.+.
T Consensus 505 kl~GmTGTa~~e~~Ef~~iY~l~--v~~iPt~-kp~~r~d~~d~-iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~ 580 (970)
T PRK12899 505 KLAGMTGTAITESREFKEIYNLY--VLQVPTF-KPCLRIDHNDE-FYMTEREKYHAIVAEIASIHRKGNPILIGTESVEV 580 (970)
T ss_pred hhcccCCCCHHHHHHHHHHhCCC--EEECCCC-CCceeeeCCCc-EecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHH
Confidence 56678888876666665555332 2222211 11111111111 1222334544 455666667778899999999999
Q ss_pred HHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCC---Ccc-----EEEEeCCCCCHhHH
Q 011060 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---NVD-----LIIHYELPNDPETF 171 (494)
Q Consensus 101 ~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip---~v~-----~VI~~~~P~~~~~y 171 (494)
.+.|+..|.+ +++..+|+..-...+-+.+-++=+. -.|.|||++|.||.||. .|. |||....|.+...-
T Consensus 581 se~ls~~L~~~gi~h~vLNak~~~~Ea~iia~AG~~--g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid 658 (970)
T PRK12899 581 SEKLSRILRQNRIEHTVLNAKNHAQEAEIIAGAGKL--GAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRID 658 (970)
T ss_pred HHHHHHHHHHcCCcceecccchhhhHHHHHHhcCCC--CcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHH
Confidence 9999999985 7888888887433333334333332 45999999999999994 222 79999999999999
Q ss_pred HHHhhccCcCCCCceEEEecChhh
Q 011060 172 VHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 172 ~qr~GR~gR~g~~g~~i~l~~~~e 195 (494)
-|-.||+||.|.+|.+.+|++-.|
T Consensus 659 ~Ql~GRagRQGdpGss~f~lSlED 682 (970)
T PRK12899 659 RQLRGRCARLGDPGAAKFFLSFED 682 (970)
T ss_pred HHHhcccccCCCCCceeEEEEcch
Confidence 999999999999999999988765
No 123
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.73 E-value=2.7e-07 Score=104.20 Aligned_cols=119 Identities=20% Similarity=0.274 Sum_probs=81.5
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcc---CcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccE--EEE
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL--IIH 161 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~---~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~--VI~ 161 (494)
..+++|||+++.+..+.++..|... .....+..+.. ..|.+++++|++++..||++|+.+.+|||+|+..+ ||.
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI 751 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVI 751 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEE
Confidence 4578999999999999999998741 12223333333 57899999999999999999999999999998774 555
Q ss_pred eCCCC----C--------------------------HhHHHHHhhccCcCCCCceEEEecChh--hHHHHHHHHHHh
Q 011060 162 YELPN----D--------------------------PETFVHRSGRTGRAGKEGTAILMFTSS--QRRTVRSLERDV 206 (494)
Q Consensus 162 ~~~P~----~--------------------------~~~y~qr~GR~gR~g~~g~~i~l~~~~--e~~~~~~l~~~~ 206 (494)
..+|. + ...+.|.+||.=|....--++++++.. ...+-+.+.+.+
T Consensus 752 ~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sL 828 (850)
T TIGR01407 752 PRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSL 828 (850)
T ss_pred eCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhC
Confidence 55553 1 123478889988865333344444432 233444444443
No 124
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.73 E-value=5e-07 Score=98.30 Aligned_cols=131 Identities=24% Similarity=0.361 Sum_probs=92.9
Q ss_pred CCCcEEEEeecCChH--HHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHHHHHHccCCeEEEEeC
Q 011060 19 PKRQSMLFSATMPSW--VKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQ 96 (494)
Q Consensus 19 ~~~q~il~SAT~~~~--v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~ 96 (494)
+.-++|+.|||..+. -..+.+..+.- ++- .......+|...|+.. ...+.+..+++.+. .-.|||++
T Consensus 275 k~g~LvvsSATg~~rg~R~~LfReLlgF----evG--~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG--~GgLIfV~ 343 (1187)
T COG1110 275 KLGILVVSSATGKPRGSRLKLFRELLGF----EVG--SGGEGLRNIVDIYVES---ESLEKVVELVKKLG--DGGLIFVP 343 (1187)
T ss_pred CCceEEEeeccCCCCCchHHHHHHHhCC----ccC--ccchhhhheeeeeccC---ccHHHHHHHHHHhC--CCeEEEEE
Confidence 456899999998432 22345555542 111 1222345565555554 34445566777664 46799999
Q ss_pred C---hHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEec----ccccccCCCCC-ccEEEEeCCC
Q 011060 97 T---KRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT----DVAARGLDIPN-VDLIIHYELP 165 (494)
Q Consensus 97 t---~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaT----d~~~~Gidip~-v~~VI~~~~P 165 (494)
. ++.+++|+++|+. ++.+..+|+. ..+.++.|..|++++||.. .++-||||+|. +.++|.|+.|
T Consensus 344 ~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 344 IDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred cHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 9 9999999999996 7999999984 3788999999999999875 48999999994 5677766544
No 125
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=98.72 E-value=5.6e-09 Score=56.81 Aligned_cols=17 Identities=59% Similarity=1.499 Sum_probs=16.1
Q ss_pred ccccCCCCccccCCCCC
Q 011060 478 ACFNCGKSGHRASECPN 494 (494)
Q Consensus 478 ~c~~c~~~gh~~~~cp~ 494 (494)
.||+|++.||+|+|||+
T Consensus 2 ~C~~C~~~GH~~~~Cp~ 18 (18)
T PF00098_consen 2 KCFNCGEPGHIARDCPK 18 (18)
T ss_dssp BCTTTSCSSSCGCTSSS
T ss_pred cCcCCCCcCcccccCcc
Confidence 49999999999999996
No 126
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.64 E-value=3.8e-07 Score=100.55 Aligned_cols=121 Identities=20% Similarity=0.384 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHcc-CCeEEEEeCChHHHHHHHHHHH-ccCcEEEEeCCCCHHHHHHHHhhccC---CcEEEEEeccccc
Q 011060 74 KRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQ---GKFTVLVATDVAA 148 (494)
Q Consensus 74 k~~~l~~ll~~~~~-~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~F~~---g~~~iLVaTd~~~ 148 (494)
|+.+|..||..+.. +.+||||.......+.|+++|. ++|+..-|.|.+.-+.|+.+++.|.. ..+..|+||-+..
T Consensus 684 KlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGG 763 (1373)
T KOG0384|consen 684 KLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGG 763 (1373)
T ss_pred cEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCc
Confidence 33445556655543 4799999999999999999998 58999999999999999999999975 4577999999999
Q ss_pred ccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCc--eEEEecChh
Q 011060 149 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEG--TAILMFTSS 194 (494)
Q Consensus 149 ~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g--~~i~l~~~~ 194 (494)
.|||+...+.||.||--|+|..=+|.--||.|.|++- .+|-|++..
T Consensus 764 LGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 764 LGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred ccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 9999999999999999999999999999999999664 467788864
No 127
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.64 E-value=5.3e-07 Score=95.15 Aligned_cols=137 Identities=20% Similarity=0.346 Sum_probs=113.3
Q ss_pred CccHHHHHHHHHHHH-ccCCeEEEEeCChHHHHHHHHHHH-ccCcEEEEeCCCCHHHHHHHHhhccCC---cEEEEEecc
Q 011060 71 ATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQG---KFTVLVATD 145 (494)
Q Consensus 71 ~~~k~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~F~~g---~~~iLVaTd 145 (494)
..-|+.+|..||..+ ..+.+||||..-....+.|..+.. +.|..+-+.|.++.++|...++.|... ++-.|++|-
T Consensus 469 nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTR 548 (971)
T KOG0385|consen 469 NSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTR 548 (971)
T ss_pred cCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecc
Confidence 346788888888665 467899999999999998888877 689999999999999999999999764 355799999
Q ss_pred cccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCc--eEEEecChh--hHHHHHHHHHHhc
Q 011060 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEG--TAILMFTSS--QRRTVRSLERDVG 207 (494)
Q Consensus 146 ~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g--~~i~l~~~~--e~~~~~~l~~~~~ 207 (494)
+...|||+...++||.||--|+|..=+|..-||.|.|++- .+|-|++.+ |...+++-+..+.
T Consensus 549 AGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~ 614 (971)
T KOG0385|consen 549 AGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLR 614 (971)
T ss_pred ccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999554 555667765 3445555544443
No 128
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.63 E-value=2.9e-07 Score=101.29 Aligned_cols=167 Identities=20% Similarity=0.219 Sum_probs=116.1
Q ss_pred EEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHH-HHHHHHHHHccCCeEEEEeCChHHH
Q 011060 23 SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKRDA 101 (494)
Q Consensus 23 ~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~l~~ll~~~~~~~~~iVF~~t~~~~ 101 (494)
+--||.|...+..++.+-|--+. +.+... .+.......-. +......|.. ++.++...+..+.++||-|.|.+..
T Consensus 566 LsGMTGTA~tea~Ef~~IY~L~V--v~IPTn-rP~~R~D~~D~-vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~S 641 (1112)
T PRK12901 566 LAGMTGTAETEAGEFWDIYKLDV--VVIPTN-RPIARKDKEDL-VYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEIS 641 (1112)
T ss_pred hcccCCCCHHHHHHHHHHhCCCE--EECCCC-CCcceecCCCe-EecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHH
Confidence 34578888777666666554332 222211 11111111111 1222334544 4556666677889999999999999
Q ss_pred HHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCC---Cc-----cEEEEeCCCCCHhHHH
Q 011060 102 DEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---NV-----DLIIHYELPNDPETFV 172 (494)
Q Consensus 102 ~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip---~v-----~~VI~~~~P~~~~~y~ 172 (494)
+.|+..|.. +++..+|++.....+-+.+-++=+.| .|-|||++|.||.||. .| -|||-...+.|...--
T Consensus 642 E~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~ 719 (1112)
T PRK12901 642 ELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDR 719 (1112)
T ss_pred HHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHH
Confidence 999999985 78888888875555555555554444 4899999999999995 22 3799999999999999
Q ss_pred HHhhccCcCCCCceEEEecChhh
Q 011060 173 HRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 173 qr~GR~gR~g~~g~~i~l~~~~e 195 (494)
|-.||+||.|.+|.+.+|++-.|
T Consensus 720 QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 720 QLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred HHhcccccCCCCCcceEEEEccc
Confidence 99999999999999999888665
No 129
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.61 E-value=9.1e-07 Score=96.92 Aligned_cols=168 Identities=20% Similarity=0.197 Sum_probs=115.0
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHH-HHHHHHHHccCCeEEEEeCChHH
Q 011060 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTI-LSDLITVYAKGGKTIVFTQTKRD 100 (494)
Q Consensus 22 q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~-l~~ll~~~~~~~~~iVF~~t~~~ 100 (494)
++--||.|...+..++.+-|--+. +.+... .+.......-. +......|..+ +..+...+..+.++||-|.|.+.
T Consensus 386 kLsGMTGTa~te~~Ef~~iY~l~V--v~IPTn-kP~~R~D~~d~-vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~ 461 (913)
T PRK13103 386 KLSGMTGTADTEAFEFRQIYGLDV--VVIPPN-KPLARKDFNDL-VYLTAEEKYAAIITDIKECMALGRPVLVGTATIET 461 (913)
T ss_pred hhccCCCCCHHHHHHHHHHhCCCE--EECCCC-CCcccccCCCe-EEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHH
Confidence 345688888777666666554332 222211 11111111111 22233345544 45555666778999999999999
Q ss_pred HHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCC-------------------------
Q 011060 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP------------------------- 154 (494)
Q Consensus 101 ~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip------------------------- 154 (494)
.+.|+..|.+ +++..+|+......+-+.+-++=+. -.|.|||++|.||.||.
T Consensus 462 SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~AG~~--GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~ 539 (913)
T PRK13103 462 SEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQAGRP--GALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKA 539 (913)
T ss_pred HHHHHHHHHHcCCcHHHhccccchhHHHHHHcCCCC--CcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHH
Confidence 9999999985 7887778777444444444444333 35999999999999994
Q ss_pred -------Cc-----cEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhh
Q 011060 155 -------NV-----DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 155 -------~v-----~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (494)
.| =|||-...|.|..-=-|-.||+||.|.+|.+-+|++-.|
T Consensus 540 ~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 540 DWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred HHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 12 278888899999999999999999999999999988755
No 130
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=98.60 E-value=6.5e-08 Score=74.78 Aligned_cols=61 Identities=21% Similarity=0.401 Sum_probs=48.9
Q ss_pred eEEEeecCcccccCCCChhHHHHHhhhhcCCCcCccccEEEeecCceeeEEeecCHHHHHHHHhhcCC
Q 011060 287 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 354 (494)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~i~~~~~~~gs~fdvp~~~a~~~~~~~~~ 354 (494)
++++++.|+ +++++|++|+++|++..++..++||+|+++++| |||+||++.++.+++....
T Consensus 1 vrl~in~Gr---~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~----S~vev~~~~a~~v~~~l~~ 61 (74)
T PF03880_consen 1 VRLFINVGR---KDGLTPRDIVGAICNEAGIPGRDIGRIDIFDNF----SFVEVPEEVAEKVLEALNG 61 (74)
T ss_dssp -EEEES-SG---GGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-TT-HHHHHHHHTT
T ss_pred CEEEEEccc---ccCCCHHHHHHHHHhccCCCHHhEEEEEEeeeE----EEEEECHHHHHHHHHHhcC
Confidence 589999998 899999999999999999999999999999998 7999999999999998664
No 131
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.55 E-value=6.6e-06 Score=84.41 Aligned_cols=182 Identities=15% Similarity=0.211 Sum_probs=133.8
Q ss_pred CcEEEEeecCChHHHHHHHHHcCCCc-EEEeccccc-----cccccceEEEEEEcCCcc-------HHHHH-HHHHHHHc
Q 011060 21 RQSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQD-----EKLAEGIKLYAISTTATS-------KRTIL-SDLITVYA 86 (494)
Q Consensus 21 ~q~il~SAT~~~~v~~~~~~~~~~~~-~v~~~~~~~-----~~~~~~i~~~~~~~~~~~-------k~~~l-~~ll~~~~ 86 (494)
+|+|+||+.+.+++..+...++.|.. .+.+..... ......++|.+...+... +.... ..++-.+.
T Consensus 216 RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~ 295 (442)
T PF06862_consen 216 RQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLK 295 (442)
T ss_pred eEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhh
Confidence 69999999999999999998776642 344432222 234455666666543322 11111 11222222
Q ss_pred ---cCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc--ccccCCCCCccEEE
Q 011060 87 ---KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV--AARGLDIPNVDLII 160 (494)
Q Consensus 87 ---~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~--~~~Gidip~v~~VI 160 (494)
....+|||+++--+--.|..+|.+ .+....+|--.++.+-.++-..|.+|+.+||+-|.= .-+=..|..|.+||
T Consensus 296 ~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~vi 375 (442)
T PF06862_consen 296 RDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVI 375 (442)
T ss_pred hccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEE
Confidence 347899999999999999999985 788889999999999999999999999999999973 33456778899999
Q ss_pred EeCCCCCHhHHHHHhhccCcCC------CCceEEEecChhhHHHHHHH
Q 011060 161 HYELPNDPETFVHRSGRTGRAG------KEGTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 161 ~~~~P~~~~~y~qr~GR~gR~g------~~g~~i~l~~~~e~~~~~~l 202 (494)
-|.+|..+.-|...+.-..... ....|.++++..|.-.++.|
T Consensus 376 FY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 376 FYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred EECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 9999999999988776544432 25789999999887666555
No 132
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.45 E-value=8.7e-06 Score=89.02 Aligned_cols=126 Identities=18% Similarity=0.157 Sum_probs=79.4
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEE-EEEEcCCccHHH-HHHHHHHHHccCCeEEEEeCChH
Q 011060 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKR 99 (494)
Q Consensus 22 q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~-~~~~~~~~~k~~-~l~~ll~~~~~~~~~iVF~~t~~ 99 (494)
.+..||.|...+..++.+.|--+ ++.+. .+.+.....+ -.+......|.. ++..+...+..+.++||-|.|.+
T Consensus 361 kL~GMTGTa~te~~Ef~~iY~l~--vv~IP---tnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe 435 (870)
T CHL00122 361 KLSGMTGTAKTEELEFEKIYNLE--VVCIP---THRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIE 435 (870)
T ss_pred hhcccCCCCHHHHHHHHHHhCCC--EEECC---CCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHH
Confidence 45568888876665665555332 22222 1111111111 112222334444 55666677778899999999999
Q ss_pred HHHHHHHHHHc-cCcEEEEeCCCC--HHHHHHHHhhccCCcEEEEEecccccccCCCC
Q 011060 100 DADEVSLALTS-IIASEALHGDIS--QHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (494)
Q Consensus 100 ~~~~l~~~l~~-~~~~~~lhg~~~--~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip 154 (494)
..+.|+..|.+ +++..+|++.-. ..+-+.|-++=+ .-.|.|||++|.||.||.
T Consensus 436 ~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~AG~--~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 436 KSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQAGR--KGSITIATNMAGRGTDII 491 (870)
T ss_pred HHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhcCC--CCcEEEeccccCCCcCee
Confidence 99999999985 899999998732 333333333323 345999999999999983
No 133
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.44 E-value=2.2e-06 Score=90.96 Aligned_cols=131 Identities=18% Similarity=0.338 Sum_probs=109.6
Q ss_pred ccHHHHHHHHHHHH-ccCCeEEEEeCChHHHHHHHHHHH--ccCcEEEEeCCCCHHHHHHHHhhccCCc-EE-EEEeccc
Q 011060 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT--SIIASEALHGDISQHQRERTLNGFRQGK-FT-VLVATDV 146 (494)
Q Consensus 72 ~~k~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~--~~~~~~~lhg~~~~~~R~~~~~~F~~g~-~~-iLVaTd~ 146 (494)
.-|..++..+++.. ..+.++|+|..|+...+.|...|. ++|....+.|..+...|..++++|.++. +. .|++|.|
T Consensus 529 sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrv 608 (923)
T KOG0387|consen 529 SGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRV 608 (923)
T ss_pred cchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecc
Confidence 45788888888654 567799999999999999999998 4899999999999999999999999765 33 5889999
Q ss_pred ccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCce--EEEecCh---hhHHHHHHH
Q 011060 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGT--AILMFTS---SQRRTVRSL 202 (494)
Q Consensus 147 ~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~--~i~l~~~---~e~~~~~~l 202 (494)
..-|+|+...+-||.|||-|+|.+=.|..-|+-|.|++-. +|-|++. +|.-+.++|
T Consensus 609 GGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI 669 (923)
T KOG0387|consen 609 GGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQI 669 (923)
T ss_pred cccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999996543 4445554 344444444
No 134
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.42 E-value=2.2e-06 Score=92.76 Aligned_cols=119 Identities=18% Similarity=0.261 Sum_probs=89.8
Q ss_pred ccHHHHHHHHHHHHcc--CCeEEEEeCChHHHHHHHHHHH-ccCcEEEEeCCCCHHHHHHHHhhccCCc---EEEEEecc
Q 011060 72 TSKRTILSDLITVYAK--GGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGK---FTVLVATD 145 (494)
Q Consensus 72 ~~k~~~l~~ll~~~~~--~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~---~~iLVaTd 145 (494)
..|+..|..++..... ..++.+..|.+...+.+..... +++.+..|||.|+..+|+.+++.|.+-. .-.|.+|.
T Consensus 577 s~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsK 656 (776)
T KOG0390|consen 577 SGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSK 656 (776)
T ss_pred hhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecc
Confidence 3566666666643321 1233333444444444444333 4899999999999999999999998643 34678899
Q ss_pred cccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEe
Q 011060 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (494)
Q Consensus 146 ~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l 190 (494)
+.+.||++-..+.||.||++|+|+.=.|.+.|+-|.|++-.|+++
T Consensus 657 Agg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 657 AGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred cccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 999999999999999999999999999999999999977666554
No 135
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=98.30 E-value=8.3e-06 Score=89.49 Aligned_cols=123 Identities=20% Similarity=0.330 Sum_probs=100.5
Q ss_pred ccHHHHHHHHHHHHc-cCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCc--EEEEEecccc
Q 011060 72 TSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK--FTVLVATDVA 147 (494)
Q Consensus 72 ~~k~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~--~~iLVaTd~~ 147 (494)
.-|++.|.-||..+. .+.++|||+...+..+-|..+|.- ++....|.|...-++|+..+++|.... +..|++|-.-
T Consensus 1259 cGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSg 1338 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSG 1338 (1958)
T ss_pred cchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCC
Confidence 467777777776653 467999999999999999999984 677888999999999999999998654 5678999999
Q ss_pred cccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCC--CCceEEEecChh
Q 011060 148 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG--KEGTAILMFTSS 194 (494)
Q Consensus 148 ~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~ 194 (494)
..|||+-..+.||.||--|++..-.|.--|+.|.| +.-+.|.|++..
T Consensus 1339 gvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1339 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred ccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 99999999999999999998776655555555555 445677788764
No 136
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.25 E-value=2.6e-05 Score=88.84 Aligned_cols=79 Identities=22% Similarity=0.268 Sum_probs=61.4
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHccCc---EEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCc--cEEEE
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTSIIA---SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV--DLIIH 161 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~~~---~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v--~~VI~ 161 (494)
.++++|||+++.+..+.+++.|..... ...+.=+++...|.+++++|++++-.||++|..+.+|||+|+- .+||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 457999999999999999999975321 2223223444567889999998888899999999999999964 67877
Q ss_pred eCCC
Q 011060 162 YELP 165 (494)
Q Consensus 162 ~~~P 165 (494)
..+|
T Consensus 831 ~kLP 834 (928)
T PRK08074 831 VRLP 834 (928)
T ss_pred ecCC
Confidence 6655
No 137
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.23 E-value=9.5e-06 Score=89.70 Aligned_cols=123 Identities=21% Similarity=0.340 Sum_probs=102.3
Q ss_pred ccHHHHHHHHHHHHc---------------cCCeEEEEeCChHHHHHHHHHHHcc----CcEEEEeCCCCHHHHHHHHhh
Q 011060 72 TSKRTILSDLITVYA---------------KGGKTIVFTQTKRDADEVSLALTSI----IASEALHGDISQHQRERTLNG 132 (494)
Q Consensus 72 ~~k~~~l~~ll~~~~---------------~~~~~iVF~~t~~~~~~l~~~l~~~----~~~~~lhg~~~~~~R~~~~~~ 132 (494)
..|+.+|.+||.... ...++||||.-+...+.+.+.|.+. +....|.|..++.+|.++.++
T Consensus 1309 spKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~ 1388 (1549)
T KOG0392|consen 1309 SPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVER 1388 (1549)
T ss_pred chhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHH
Confidence 457888888886542 2368999999999999999888752 233478999999999999999
Q ss_pred ccCC-cEEEE-EecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCce--EEEecChh
Q 011060 133 FRQG-KFTVL-VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGT--AILMFTSS 194 (494)
Q Consensus 133 F~~g-~~~iL-VaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~--~i~l~~~~ 194 (494)
|.++ .++|| ++|-|..-|+|+...+.||.++--|++..=+|..-||.|.|++-+ +|.|++..
T Consensus 1389 FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1389 FNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRG 1454 (1549)
T ss_pred hcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcc
Confidence 9998 78875 678899999999999999999999999999999999999996644 55566553
No 138
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.21 E-value=5.4e-06 Score=83.79 Aligned_cols=188 Identities=18% Similarity=0.343 Sum_probs=122.5
Q ss_pred HHHHhCCCCCcEEEEeec--CChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHHHHH-----
Q 011060 12 LILENLPPKRQSMLFSAT--MPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV----- 84 (494)
Q Consensus 12 ~Il~~~~~~~q~il~SAT--~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~----- 84 (494)
++|.++|+++|.+..-++ +.....++...-.+ ...++....+ ......+|-. ....|...+.+.|..
T Consensus 415 dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~-~t~~~~~e~~----~~~l~l~y~~-tgiaK~~av~eyi~~~~~l~ 488 (689)
T KOG1000|consen 415 DVLKQLPPKRREVVYVSGGRIDARMDDLVKAAAD-YTKVNSMERK----HESLLLFYSL-TGIAKAAAVCEYILENYFLP 488 (689)
T ss_pred HHHhhCCccceEEEEEcCCccchHHHHHHHHhhh-cchhhhhhhh----hHHHHHHHHH-hcccccHHHHHHHHhCcccc
Confidence 467889988776655444 33334444433222 2222211110 1111111111 112344444433332
Q ss_pred HccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCC-cEEE-EEecccccccCCCCCccEEEE
Q 011060 85 YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG-KFTV-LVATDVAARGLDIPNVDLIIH 161 (494)
Q Consensus 85 ~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g-~~~i-LVaTd~~~~Gidip~v~~VI~ 161 (494)
..++.+.+|||-.....+.+...+.+ ++....+.|..+...|+...+.|+.. ++.| +++-.++..||++...+.||.
T Consensus 489 d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVF 568 (689)
T KOG1000|consen 489 DAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVF 568 (689)
T ss_pred cCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEE
Confidence 13457999999999999999999985 88999999999999999999999854 3444 556678899999999999999
Q ss_pred eCCCCCHhHHHHHhhccCcCCCCceEEE--ecCh--hhHHHHHHHHHH
Q 011060 162 YELPNDPETFVHRSGRTGRAGKEGTAIL--MFTS--SQRRTVRSLERD 205 (494)
Q Consensus 162 ~~~P~~~~~y~qr~GR~gR~g~~g~~i~--l~~~--~e~~~~~~l~~~ 205 (494)
..+||++..++|.--|+.|.|++..+.+ |+.. .|......|.+.
T Consensus 569 aEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~K 616 (689)
T KOG1000|consen 569 AELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQK 616 (689)
T ss_pred EEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHH
Confidence 9999999999999999999887654433 3322 233444444443
No 139
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.15 E-value=5.5e-05 Score=82.86 Aligned_cols=126 Identities=17% Similarity=0.138 Sum_probs=78.6
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEE-EEEEcCCccHHHH-HHHHHHHHccCCeEEEEeCChH
Q 011060 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTI-LSDLITVYAKGGKTIVFTQTKR 99 (494)
Q Consensus 22 q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~-l~~ll~~~~~~~~~iVF~~t~~ 99 (494)
++..||.|.-.+..++.+-|--+. +.+. .+.+.....+ -.+......|..+ +.++.+.+..+.++||-|.|.+
T Consensus 376 kLsGMTGTa~te~~Ef~~iY~l~V--v~IP---TnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe 450 (939)
T PRK12902 376 KLAGMTGTAKTEEVEFEKTYKLEV--TVIP---TNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVE 450 (939)
T ss_pred hhcccCCCCHHHHHHHHHHhCCcE--EEcC---CCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHH
Confidence 455688888766666666554332 2222 1111111111 1112222345444 4556666678899999999999
Q ss_pred HHHHHHHHHHc-cCcEEEEeCC-CC-HHHHHHHHhhccCCcEEEEEecccccccCCCC
Q 011060 100 DADEVSLALTS-IIASEALHGD-IS-QHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (494)
Q Consensus 100 ~~~~l~~~l~~-~~~~~~lhg~-~~-~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip 154 (494)
..+.|+..|.+ +++..+|+.. .. ..+-+.+-++=+. -.|-|||++|.||.||.
T Consensus 451 ~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~AG~~--GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 451 KSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQAGRK--GAVTIATNMAGRGTDII 506 (939)
T ss_pred HHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhcCCC--CcEEEeccCCCCCcCEe
Confidence 99999999985 8888899986 22 2333333333333 35899999999999984
No 140
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.13 E-value=2.2e-05 Score=85.24 Aligned_cols=82 Identities=28% Similarity=0.459 Sum_probs=70.7
Q ss_pred EEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEEeC-CCCCHhHHHHHhhccCcCC--CCceEEEe
Q 011060 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE-LPNDPETFVHRSGRTGRAG--KEGTAILM 190 (494)
Q Consensus 114 ~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~~~-~P~~~~~y~qr~GR~gR~g--~~g~~i~l 190 (494)
+-++|++|....|..+.--||.|...||+||..++-|||+|--++|+--| +--++-.|.|++|||||-| ..|.++.+
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~Fm 1044 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFM 1044 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEEE
Confidence 44579999999999999999999999999999999999999888777655 4458899999999999987 56888877
Q ss_pred cChhh
Q 011060 191 FTSSQ 195 (494)
Q Consensus 191 ~~~~e 195 (494)
=-|..
T Consensus 1045 giP~~ 1049 (1330)
T KOG0949|consen 1045 GIPRQ 1049 (1330)
T ss_pred eCcHH
Confidence 55543
No 141
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.12 E-value=3.3e-05 Score=82.22 Aligned_cols=123 Identities=22% Similarity=0.336 Sum_probs=103.7
Q ss_pred cHHHHHHHHHHHHcc-CCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCc--EEEEEeccccc
Q 011060 73 SKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK--FTVLVATDVAA 148 (494)
Q Consensus 73 ~k~~~l~~ll~~~~~-~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~--~~iLVaTd~~~ 148 (494)
.|...|..||..+.+ +.+||||..-....+-|...|.. .+....|.|...-..|+.+++.|...+ .-.|++|.+..
T Consensus 761 gK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG 840 (941)
T KOG0389|consen 761 GKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGG 840 (941)
T ss_pred hhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCc
Confidence 467778888876644 57999999999999988888884 788999999999999999999998654 34689999999
Q ss_pred ccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCC--CCceEEEecChhh
Q 011060 149 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG--KEGTAILMFTSSQ 195 (494)
Q Consensus 149 ~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e 195 (494)
-|||+-..++||.+|+-.+|-.=.|.--|+.|.| ++-++|.|++...
T Consensus 841 ~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 841 FGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred ceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCc
Confidence 9999999999999999888888888888888888 4566777887754
No 142
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.09 E-value=3.5e-05 Score=86.38 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=58.1
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCC--CccEEEEe
Q 011060 86 AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP--NVDLIIHY 162 (494)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip--~v~~VI~~ 162 (494)
..++++||++++.+..+.+++.|.. .+.+ ...|.-. .+.+++++|++++-.||++|..+.+|||+| +...||..
T Consensus 645 ~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~ 721 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVIT 721 (820)
T ss_pred hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEe
Confidence 3568999999999999999999874 2333 3444322 256689999998889999999999999997 34555655
Q ss_pred CCC
Q 011060 163 ELP 165 (494)
Q Consensus 163 ~~P 165 (494)
.+|
T Consensus 722 kLP 724 (820)
T PRK07246 722 RLP 724 (820)
T ss_pred cCC
Confidence 544
No 143
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.08 E-value=7e-05 Score=83.33 Aligned_cols=89 Identities=17% Similarity=0.188 Sum_probs=68.0
Q ss_pred EEEeCChHHHHHHHHHHHcc-------CcEEEEeCCCCHHHHHHHHhhc----------------------cC----CcE
Q 011060 92 IVFTQTKRDADEVSLALTSI-------IASEALHGDISQHQRERTLNGF----------------------RQ----GKF 138 (494)
Q Consensus 92 iVF~~t~~~~~~l~~~l~~~-------~~~~~lhg~~~~~~R~~~~~~F----------------------~~----g~~ 138 (494)
||-+++++.+-.++..|... +.+.+||+..+...|..+++.. ++ +..
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~ 839 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHL 839 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCC
Confidence 67788888888888777632 4578899999888776665443 11 356
Q ss_pred EEEEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCC
Q 011060 139 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 183 (494)
Q Consensus 139 ~iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~ 183 (494)
.|+|+|+|++.|+|+ +.+++|- -|.+..+.+||+||+.|.+.
T Consensus 840 ~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 840 FIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred eEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhccccccc
Confidence 899999999999999 4566654 35678999999999999763
No 144
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=98.07 E-value=4.1e-05 Score=77.66 Aligned_cols=119 Identities=24% Similarity=0.328 Sum_probs=93.5
Q ss_pred ccHHHHHHHHHHHHc-cCCeEEEEeCChHHHHHHHHHHHccCcEEEEeCCCCHHHHHHHHhhccC-CcEEEEEecccccc
Q 011060 72 TSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQ-GKFTVLVATDVAAR 149 (494)
Q Consensus 72 ~~k~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~F~~-g~~~iLVaTd~~~~ 149 (494)
..|..+..-||+.++ .+.++|||....-...+.+-.|.+ -.++|..+|.+|.+|++.|+- ..++-++-+.|...
T Consensus 526 P~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDt 601 (776)
T KOG1123|consen 526 PNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK----PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDT 601 (776)
T ss_pred cchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC----ceEECCCchhHHHHHHHhcccCCccceEEEeeccCc
Confidence 357777788887774 467999999998887777776654 358999999999999999985 56888999999999
Q ss_pred cCCCCCccEEEEeCCC-CCHhHHHHHhhccCcCCC---C---ceEEEecChh
Q 011060 150 GLDIPNVDLIIHYELP-NDPETFVHRSGRTGRAGK---E---GTAILMFTSS 194 (494)
Q Consensus 150 Gidip~v~~VI~~~~P-~~~~~y~qr~GR~gR~g~---~---g~~i~l~~~~ 194 (494)
.||+|..+++|+..-- -+..+-.||.||.-|+-+ + ..-|.|++..
T Consensus 602 SiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~D 653 (776)
T KOG1123|consen 602 SIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKD 653 (776)
T ss_pred cccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecc
Confidence 9999999999986543 367788999999998752 2 2345555543
No 145
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=98.06 E-value=0.00035 Score=73.73 Aligned_cols=68 Identities=22% Similarity=0.359 Sum_probs=51.8
Q ss_pred eEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc------cccccCCCCCccE
Q 011060 90 KTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVDL 158 (494)
Q Consensus 90 ~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd------~~~~Gidip~v~~ 158 (494)
++||.++|++.|.++++.+.. .+.+..++|+++...+...+. +..+|||+|+ .....+++..+++
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~IiV~TP~rL~~~~~~~~~~l~~v~~ 152 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLR----GGVDVLVATPGRLLDLEHQNAVKLDQVEI 152 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHc----CCCcEEEEChHHHHHHHHcCCcccccceE
Confidence 799999999999999888764 356778899988776544332 4678999996 2344568888888
Q ss_pred EEE
Q 011060 159 IIH 161 (494)
Q Consensus 159 VI~ 161 (494)
||.
T Consensus 153 lVi 155 (456)
T PRK10590 153 LVL 155 (456)
T ss_pred EEe
Confidence 774
No 146
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.05 E-value=0.00016 Score=79.82 Aligned_cols=101 Identities=22% Similarity=0.282 Sum_probs=73.2
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHccCc--EEEEeCCCCHHHHHHHHhhccCCcE-EEEEecccccccCCCCCc--cEEEE
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTSIIA--SEALHGDISQHQRERTLNGFRQGKF-TVLVATDVAARGLDIPNV--DLIIH 161 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~~~--~~~lhg~~~~~~R~~~~~~F~~g~~-~iLVaTd~~~~Gidip~v--~~VI~ 161 (494)
.++++|||+++.+..+.+++.+..... ....++..+ +...+++|+...- .++|+|..+++|||+|+- ..||.
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI 554 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVI 554 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEE
Confidence 346899999999999999999986432 445566544 4478888877554 899999999999999865 56776
Q ss_pred eCCCC------------------------------CHhHHHHHhhccCcCCC-CceEEEe
Q 011060 162 YELPN------------------------------DPETFVHRSGRTGRAGK-EGTAILM 190 (494)
Q Consensus 162 ~~~P~------------------------------~~~~y~qr~GR~gR~g~-~g~~i~l 190 (494)
..+|. -...+.|-+||.=|.-. .|.++++
T Consensus 555 ~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivll 614 (654)
T COG1199 555 VGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLL 614 (654)
T ss_pred EecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEe
Confidence 66553 23445889999988543 3444433
No 147
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.99 E-value=6.8e-05 Score=82.86 Aligned_cols=80 Identities=25% Similarity=0.408 Sum_probs=59.2
Q ss_pred HHHccCCeEEEEeCChHHHHHHHHHHHccC-cEEEEeCCCCHHHHHHHHhhcc----CCcEEEEEecccccccCCCCC--
Q 011060 83 TVYAKGGKTIVFTQTKRDADEVSLALTSII-ASEALHGDISQHQRERTLNGFR----QGKFTVLVATDVAARGLDIPN-- 155 (494)
Q Consensus 83 ~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~-~~~~lhg~~~~~~R~~~~~~F~----~g~~~iLVaTd~~~~Gidip~-- 155 (494)
+.....+.+|||+++.+..+.++..|.... .....++.. .+.++++.|+ .++-.||++|..+.+|||+|+
T Consensus 529 ~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~ 605 (697)
T PRK11747 529 ELLEKHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDY 605 (697)
T ss_pred HHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCc
Confidence 333345679999999999999999987422 223345642 4667786666 466789999999999999986
Q ss_pred ccEEEEeCCC
Q 011060 156 VDLIIHYELP 165 (494)
Q Consensus 156 v~~VI~~~~P 165 (494)
+++||...+|
T Consensus 606 l~~vII~kLP 615 (697)
T PRK11747 606 LTQVIITKIP 615 (697)
T ss_pred eEEEEEEcCC
Confidence 6788876665
No 148
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.96 E-value=4e-05 Score=82.53 Aligned_cols=92 Identities=25% Similarity=0.366 Sum_probs=75.8
Q ss_pred CCeEEEEeCChHHHHHHHHHHHccC------cEEEEeCCCCHHHHHHHHhhccC--CcEEEEEecccccccCCCCCccEE
Q 011060 88 GGKTIVFTQTKRDADEVSLALTSII------ASEALHGDISQHQRERTLNGFRQ--GKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~~------~~~~lhg~~~~~~R~~~~~~F~~--g~~~iLVaTd~~~~Gidip~v~~V 159 (494)
-.|+||||.+..+|+.+...|.+.+ .+..+.++-.+.+ ..++.|.. .--.|.|+.|++..|||+|.|..+
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nl 503 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNL 503 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeee
Confidence 3699999999999999999998643 3677888855444 34555544 345689999999999999999999
Q ss_pred EEeCCCCCHhHHHHHhhccCcC
Q 011060 160 IHYELPNDPETFVHRSGRTGRA 181 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~ 181 (494)
|.+..-.|...|.||+||.-|.
T Consensus 504 VF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 504 VFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred eehhhhhhHHHHHHHhcCcccc
Confidence 9999999999999999998884
No 149
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.95 E-value=7.7e-05 Score=84.99 Aligned_cols=117 Identities=20% Similarity=0.317 Sum_probs=100.7
Q ss_pred cHHHHHHHHH-H-HHccCC--eEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCC--cEEEEEecc
Q 011060 73 SKRTILSDLI-T-VYAKGG--KTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG--KFTVLVATD 145 (494)
Q Consensus 73 ~k~~~l~~ll-~-~~~~~~--~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g--~~~iLVaTd 145 (494)
.|...+.+++ . ...... ++|||+......+.+...+.. .+....++|.++.+.|..++++|.++ ..-+|++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 5777777777 3 334455 899999999999999999986 46899999999999999999999985 456788889
Q ss_pred cccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEE
Q 011060 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 189 (494)
Q Consensus 146 ~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~ 189 (494)
+...|+|+...++||+||+.|++....|...|+.|.|++..+.+
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v 815 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKV 815 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEE
Confidence 99999999999999999999999999999999999886654433
No 150
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.94 E-value=0.00013 Score=80.23 Aligned_cols=93 Identities=18% Similarity=0.212 Sum_probs=73.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc------CcEEEEeCCCCHH---------------------HHHHHHhhccC-CcEE
Q 011060 88 GGKTIVFTQTKRDADEVSLALTSI------IASEALHGDISQH---------------------QRERTLNGFRQ-GKFT 139 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~------~~~~~lhg~~~~~---------------------~R~~~~~~F~~-g~~~ 139 (494)
..+++|||.++..|..+++.|.+. ..+.++++..+.+ ....++++|++ +.++
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 479999999999999999888642 2345565543322 22478889976 6789
Q ss_pred EEEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcC
Q 011060 140 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 181 (494)
Q Consensus 140 iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~ 181 (494)
|||.+|.+..|.|.|.+++++...+-.+. .++|.+||+.|.
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~ 634 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRI 634 (667)
T ss_pred EEEEEcccccccCCCccceEEEecccccc-HHHHHHHHhccc
Confidence 99999999999999999988887765554 589999999993
No 151
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.88 E-value=0.00014 Score=79.34 Aligned_cols=119 Identities=21% Similarity=0.333 Sum_probs=104.2
Q ss_pred ccHHHHHHHHHHHH-ccCCeEEEEeCChHHHHHHHHHHH-ccCcEEEEeCCCCHHHHHHHHhhccCCc---EEEEEeccc
Q 011060 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGK---FTVLVATDV 146 (494)
Q Consensus 72 ~~k~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~---~~iLVaTd~ 146 (494)
.-|+++|..++-.+ ..++++|.||.-....+.+..+|. +.+....+.|....++|-..++.|..-. +..|++|-+
T Consensus 709 sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstra 788 (1157)
T KOG0386|consen 709 SGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRA 788 (1157)
T ss_pred ccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecc
Confidence 46889999988666 347899999999999998988888 5788899999999999999999998644 557899999
Q ss_pred ccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEe
Q 011060 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (494)
Q Consensus 147 ~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l 190 (494)
...|+|+...+.||.||.-|++....|+--|+.|.|..-.+-++
T Consensus 789 gglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~ 832 (1157)
T KOG0386|consen 789 GGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVL 832 (1157)
T ss_pred cccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeee
Confidence 99999999999999999999999999999999999966555444
No 152
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=97.82 E-value=2.2e-05 Score=69.45 Aligned_cols=19 Identities=42% Similarity=1.338 Sum_probs=16.5
Q ss_pred CCccccCCCCccccCCCCC
Q 011060 476 GGACFNCGKSGHRASECPN 494 (494)
Q Consensus 476 ~~~c~~c~~~gh~~~~cp~ 494 (494)
...||+|++.||+|+|||+
T Consensus 129 ~~~C~~Cg~~gH~~~dCp~ 147 (148)
T PTZ00368 129 DKTCYNCGQTGHLSRDCPD 147 (148)
T ss_pred CCccccCCCcCcccccCCC
Confidence 4579999999999999995
No 153
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=97.80 E-value=9.6e-05 Score=77.79 Aligned_cols=122 Identities=19% Similarity=0.321 Sum_probs=104.6
Q ss_pred ccHHHHHHHHHHHHc-cCCeEEEEeCChHHHHHHHHHHH-ccCcEEEEeCCCCHHHHHHHHhhccCCc-EEEEEeccccc
Q 011060 72 TSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGK-FTVLVATDVAA 148 (494)
Q Consensus 72 ~~k~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~-~~iLVaTd~~~ 148 (494)
..|+..|..||..+. .+.++|+|+...+..+.+.++|. +.|....|.|.....+|..++.+|.... +-.|++|-+..
T Consensus 1027 SgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGG 1106 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGG 1106 (1185)
T ss_pred ccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCc
Confidence 357777877776663 46799999999999999999998 5899999999999999999999998755 44689999999
Q ss_pred ccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCC--ceEEEecCh
Q 011060 149 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE--GTAILMFTS 193 (494)
Q Consensus 149 ~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~--g~~i~l~~~ 193 (494)
.||++...+.||.||--|++..-.|..-|+.|.|++ -++|.+++.
T Consensus 1107 LGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~r 1153 (1185)
T KOG0388|consen 1107 LGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITR 1153 (1185)
T ss_pred ccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccc
Confidence 999999999999999999999999999999998855 445656554
No 154
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.79 E-value=8.2e-05 Score=67.24 Aligned_cols=105 Identities=24% Similarity=0.396 Sum_probs=70.9
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHccC---cEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc--cccccCCCCC--ccEE
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTSII---ASEALHGDISQHQRERTLNGFRQGKFTVLVATD--VAARGLDIPN--VDLI 159 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~~---~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd--~~~~Gidip~--v~~V 159 (494)
.++.+|||+++.+..+.+++.+.... ....+.- ...++.++++.|+++.-.||+++. .+.+|||+|+ ++.|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 35899999999999999999987532 1223332 356788999999999999999999 9999999995 6678
Q ss_pred EEeCCCC----CH--------------------------hHHHHHhhccCcCCCCceEEEecCh
Q 011060 160 IHYELPN----DP--------------------------ETFVHRSGRTGRAGKEGTAILMFTS 193 (494)
Q Consensus 160 I~~~~P~----~~--------------------------~~y~qr~GR~gR~g~~g~~i~l~~~ 193 (494)
|...+|. ++ ....|-+||.=|....--+++++++
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 8888774 21 1126788999887654444445444
No 155
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.77 E-value=0.00018 Score=72.90 Aligned_cols=122 Identities=18% Similarity=0.228 Sum_probs=97.6
Q ss_pred cHHHHHHHHHHHHcc---CCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCc-EE-EEEeccc
Q 011060 73 SKRTILSDLITVYAK---GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK-FT-VLVATDV 146 (494)
Q Consensus 73 ~k~~~l~~ll~~~~~---~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~-~~-iLVaTd~ 146 (494)
.|+++|.+-|..+.. .-+.|||..-....+.+.-.|.+ ++.++-|.|+|++..|+.+++.|++.- +. .||+-.+
T Consensus 620 TKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkA 699 (791)
T KOG1002|consen 620 TKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKA 699 (791)
T ss_pred hHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEecc
Confidence 466666554444422 34889999999999988888886 899999999999999999999999753 44 4677778
Q ss_pred ccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCC--CCceEEEecChh
Q 011060 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG--KEGTAILMFTSS 194 (494)
Q Consensus 147 ~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~ 194 (494)
...-+|+...++|+..|+-|++..-.|.--|..|.| ++-.++.|+-.+
T Consensus 700 GGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 700 GGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred CceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhc
Confidence 888899999999999999999999888888888877 456677776543
No 156
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=97.74 E-value=4.9e-05 Score=67.24 Aligned_cols=68 Identities=19% Similarity=0.302 Sum_probs=42.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCccccCCCCccccCCCC
Q 011060 415 FRSSRSWGSDDEDGFSSSRGGRS-FRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSSRSFGGACFNCGKSGHRASECP 493 (494)
Q Consensus 415 ~~~~~~~g~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~c~~c~~~gh~~~~cp 493 (494)
...|++|+.+||.+++|+..... ....++.|+. .+|++..-... ...+....||+|++.||+++|||
T Consensus 27 ~~~C~~Cg~~GH~~~~Cp~~~~~~~~~~C~~Cg~-----~GH~~~~Cp~~-------~~~~~~~~C~~Cg~~GH~~~~C~ 94 (148)
T PTZ00368 27 ARPCYKCGEPGHLSRECPSAPGGRGERSCYNCGK-----TGHLSRECPEA-------PPGSGPRSCYNCGQTGHISRECP 94 (148)
T ss_pred CccCccCCCCCcCcccCcCCCCCCCCcccCCCCC-----cCcCcccCCCc-------ccCCCCcccCcCCCCCcccccCC
Confidence 35799999999999999765322 2245666663 34441110000 00112346999999999999998
Q ss_pred C
Q 011060 494 N 494 (494)
Q Consensus 494 ~ 494 (494)
+
T Consensus 95 ~ 95 (148)
T PTZ00368 95 N 95 (148)
T ss_pred C
Confidence 5
No 157
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.71 E-value=0.00021 Score=74.38 Aligned_cols=89 Identities=19% Similarity=0.286 Sum_probs=70.8
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc-----ccccc-CCCCCc
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPNV 156 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd-----~~~~G-idip~v 156 (494)
...+||.+|||+.|.++...+.. .+.+.+++|+.+...+.+-+++ -++|+|||+ .+..| +|+..|
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~----gvdiviaTPGRl~d~le~g~~~l~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLER----GVDVVIATPGRLIDLLEEGSLNLSRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhc----CCcEEEeCChHHHHHHHcCCccccce
Confidence 45799999999999999888764 2558999999998888777765 689999997 45555 788899
Q ss_pred cEEEE--------eCCCCCHhHHHHHhhccCc
Q 011060 157 DLIIH--------YELPNDPETFVHRSGRTGR 180 (494)
Q Consensus 157 ~~VI~--------~~~P~~~~~y~qr~GR~gR 180 (494)
+++|. .++-.++...++.+.|.-|
T Consensus 241 ~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 241 TYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred eEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 99883 3444567888888888776
No 158
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.69 E-value=0.001 Score=71.95 Aligned_cols=77 Identities=19% Similarity=0.206 Sum_probs=60.6
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHccCc-EEEEeCCCCHHHHHHHHhhccC----CcEEEEEecccccccCCC--------
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTSIIA-SEALHGDISQHQRERTLNGFRQ----GKFTVLVATDVAARGLDI-------- 153 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~~~-~~~lhg~~~~~~R~~~~~~F~~----g~~~iLVaTd~~~~Gidi-------- 153 (494)
..+.+||.+.+....+.+++.|...+. ...+.|+.+ .+...+++|+. +.-.||++|+.+..|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 457999999999999999999986543 344566543 34567888886 468899999999999999
Q ss_pred --CCccEEEEeCCC
Q 011060 154 --PNVDLIIHYELP 165 (494)
Q Consensus 154 --p~v~~VI~~~~P 165 (494)
..+++||...+|
T Consensus 547 ~G~~Ls~ViI~kLP 560 (636)
T TIGR03117 547 KDNLLTDLIITCAP 560 (636)
T ss_pred CCCcccEEEEEeCC
Confidence 357889887766
No 159
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.67 E-value=0.00027 Score=76.38 Aligned_cols=52 Identities=13% Similarity=0.116 Sum_probs=33.1
Q ss_pred EEEeecCcccccCCCChhHHHHHhhhhcCCCcCccccEEEeecCceeeEEeecCHHHHHHHH
Q 011060 288 TLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELL 349 (494)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~i~~~~~~~gs~fdvp~~~a~~~~ 349 (494)
|-.++++. ...+.|-.|+-|-+++.......|-+++-| .-++|..+.|..|.
T Consensus 1048 TRAIS~K~---MslVsPLQLLLF~SrKVqsdgq~IV~VDdW-------IklqIshEaAAcIt 1099 (1282)
T KOG0921|consen 1048 TRAISCKQ---MSLVSPLQLLLFGSRKVQSDGQGIVRVDDW-------IKLQISHEAAACIT 1099 (1282)
T ss_pred hheecccC---ccccChHHHhhhhhhhccccCcceEEeece-------eeEeccHHHHHHHh
Confidence 44444443 445778888888777766555555555544 34899988887553
No 160
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.62 E-value=3.4e-05 Score=69.08 Aligned_cols=54 Identities=22% Similarity=0.377 Sum_probs=35.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCccccCCCCccccCCC-C
Q 011060 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSSRSFGGACFNCGKSGHRASEC-P 493 (494)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~c~~c~~~gh~~~~c-p 493 (494)
.-|+.||+.||..++|+ . .=|+.|..- +|. +..++- ...||+||+.||++||| |
T Consensus 61 ~~C~nCg~~GH~~~DCP-~-----~iC~~C~~~-----~H~-----------s~~C~~--~~~C~~Cg~~GH~~~dC~P 115 (190)
T COG5082 61 PVCFNCGQNGHLRRDCP-H-----SICYNCSWD-----GHR-----------SNHCPK--PKKCYNCGETGHLSRDCNP 115 (190)
T ss_pred cccchhcccCcccccCC-h-----hHhhhcCCC-----Ccc-----------cccCCc--ccccccccccCccccccCc
Confidence 56999999999999998 2 334454321 222 111111 14588888888888888 5
No 161
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=97.61 E-value=0.0036 Score=60.64 Aligned_cols=19 Identities=5% Similarity=0.186 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHhcCCcccc
Q 011060 195 QRRTVRSLERDVGCKFEFV 213 (494)
Q Consensus 195 e~~~~~~l~~~~~~~~~~~ 213 (494)
+...+..|+..+...++.+
T Consensus 163 ~~~lfe~i~~kl~~ai~kv 181 (465)
T KOG3973|consen 163 EWKLFETIRQKLDGAIKKV 181 (465)
T ss_pred HHHHHHHHHHHHHhHHhcC
Confidence 4455555555554444443
No 162
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.57 E-value=0.0018 Score=66.16 Aligned_cols=68 Identities=16% Similarity=0.232 Sum_probs=54.0
Q ss_pred eEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc------cccccCCCCCccE
Q 011060 90 KTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVDL 158 (494)
Q Consensus 90 ~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd------~~~~Gidip~v~~ 158 (494)
-.||.|+|++.+.++....++ ++.+.++||+.+.-++...++. ...|+|||+ |--.++|+..|++
T Consensus 298 i~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~----g~EivVaTPgRlid~VkmKatn~~rvS~ 373 (731)
T KOG0339|consen 298 IGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKE----GAEIVVATPGRLIDMVKMKATNLSRVSY 373 (731)
T ss_pred eEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhc----CCeEEEechHHHHHHHHhhcccceeeeE
Confidence 357788999999887665543 4788999999999998888773 678999998 4456889999998
Q ss_pred EEE
Q 011060 159 IIH 161 (494)
Q Consensus 159 VI~ 161 (494)
+|.
T Consensus 374 LV~ 376 (731)
T KOG0339|consen 374 LVL 376 (731)
T ss_pred EEE
Confidence 663
No 163
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.51 E-value=0.00043 Score=75.66 Aligned_cols=118 Identities=24% Similarity=0.276 Sum_probs=86.0
Q ss_pred HHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCC
Q 011060 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (494)
Q Consensus 76 ~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip 154 (494)
.++.++...+..+.++||-+.+.+..+.+.+.|.+ +++..+|...-...+-+.+.++=+.| .|-|||++|.||-||.
T Consensus 417 Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~Iia~AG~~g--aVTiATNMAGRGTDIk 494 (822)
T COG0653 417 AIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAEIIAQAGQPG--AVTIATNMAGRGTDIK 494 (822)
T ss_pred HHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHHHHHhhcCCCC--ccccccccccCCcccc
Confidence 45566667778889999999999999999999985 78888887775544444444443333 4889999999999994
Q ss_pred Ccc-----------EEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhh
Q 011060 155 NVD-----------LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 155 ~v~-----------~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (494)
--. +||-..--.+..-=-|-.||+||.|.+|.+-.+++-.+
T Consensus 495 Lg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 495 LGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred cCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 222 35544433333334588999999999999888877654
No 164
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=97.50 E-value=3.2e-05 Score=48.20 Aligned_cols=17 Identities=41% Similarity=1.257 Sum_probs=15.9
Q ss_pred ccccCCCCccccCCCCC
Q 011060 478 ACFNCGKSGHRASECPN 494 (494)
Q Consensus 478 ~c~~c~~~gh~~~~cp~ 494 (494)
-|+.|++.|||.+|||.
T Consensus 10 ~C~~C~~~GH~i~dCP~ 26 (32)
T PF13696_consen 10 VCHRCGQKGHWIQDCPT 26 (32)
T ss_pred EeecCCCCCccHhHCCC
Confidence 49999999999999995
No 165
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.48 E-value=0.0048 Score=68.69 Aligned_cols=79 Identities=15% Similarity=0.262 Sum_probs=57.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc-C------cEEEEeCCCCHHHHHHHHhhccC----CcEEEEEec--ccccccCCCC
Q 011060 88 GGKTIVFTQTKRDADEVSLALTSI-I------ASEALHGDISQHQRERTLNGFRQ----GKFTVLVAT--DVAARGLDIP 154 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~-~------~~~~lhg~~~~~~R~~~~~~F~~----g~~~iLVaT--d~~~~Gidip 154 (494)
++.+|||+++-...+.+++.+.+. + ...++.-.-...+++.++++|+. +.-.||+|+ ..+++|||++
T Consensus 522 pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf~ 601 (705)
T TIGR00604 522 PDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDFC 601 (705)
T ss_pred CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCceEEEEecCCcccCccccC
Confidence 588999999999999998887631 1 01122211122577889999964 455699999 8899999998
Q ss_pred C--ccEEEEeCCCC
Q 011060 155 N--VDLIIHYELPN 166 (494)
Q Consensus 155 ~--v~~VI~~~~P~ 166 (494)
+ +..||...+|.
T Consensus 602 ~~~~r~ViivGlPf 615 (705)
T TIGR00604 602 DDLGRAVIMVGIPY 615 (705)
T ss_pred CCCCcEEEEEccCC
Confidence 6 57888888875
No 166
>PRK14873 primosome assembly protein PriA; Provisional
Probab=97.44 E-value=0.0031 Score=68.99 Aligned_cols=69 Identities=12% Similarity=0.163 Sum_probs=47.6
Q ss_pred HHHHhhccCCcEEEEEecc----cccccCCCCCccEEEEeCC------CC------CHhHHHHHhhccCcCCCCceEEEe
Q 011060 127 ERTLNGFRQGKFTVLVATD----VAARGLDIPNVDLIIHYEL------PN------DPETFVHRSGRTGRAGKEGTAILM 190 (494)
Q Consensus 127 ~~~~~~F~~g~~~iLVaTd----~~~~Gidip~v~~VI~~~~------P~------~~~~y~qr~GR~gR~g~~g~~i~l 190 (494)
+.+++.|.. +.+|||+|. +++ +++++|+..|. |. ....+.|-+||+||..+.|.+++.
T Consensus 462 d~~l~~~~~-~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq 535 (665)
T PRK14873 462 DQVVDTVDA-GPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVV 535 (665)
T ss_pred HHHHHhhcc-CCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEE
Confidence 457888874 899999999 555 46777765442 32 233458899999999999999988
Q ss_pred cChhhHHHHHHH
Q 011060 191 FTSSQRRTVRSL 202 (494)
Q Consensus 191 ~~~~e~~~~~~l 202 (494)
..+ +...++.+
T Consensus 536 ~~p-~~~~~~~l 546 (665)
T PRK14873 536 AES-SLPTVQAL 546 (665)
T ss_pred eCC-CCHHHHHH
Confidence 644 33344443
No 167
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=97.34 E-value=0.0018 Score=70.53 Aligned_cols=119 Identities=18% Similarity=0.243 Sum_probs=98.1
Q ss_pred ccHHHHHHHHHHHH-ccCCeEEEEeCChHHHHHHHHHHHc----c-------------------CcEEEEeCCCCHHHHH
Q 011060 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS----I-------------------IASEALHGDISQHQRE 127 (494)
Q Consensus 72 ~~k~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~~----~-------------------~~~~~lhg~~~~~~R~ 127 (494)
..|+.+|.+||... .-+.++|||..+....+.|..+|.. + .....|.|..+..+|+
T Consensus 1125 SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~ 1204 (1567)
T KOG1015|consen 1125 SGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRK 1204 (1567)
T ss_pred CcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHH
Confidence 35667777887654 3478999999999988888888752 1 1345678999999999
Q ss_pred HHHhhccCCc----EEEEEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEe
Q 011060 128 RTLNGFRQGK----FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (494)
Q Consensus 128 ~~~~~F~~g~----~~iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l 190 (494)
.+.+.|.+-. .-.||+|-+.+.|||+-..+-||.||..|++..-+|-+=|+-|.|+.--||++
T Consensus 1205 k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1205 KWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 9999998632 34799999999999999999999999999999999999999999976666554
No 168
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.28 E-value=0.0009 Score=74.41 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=41.7
Q ss_pred EecccccccCCCCC----------------------c----------cEEEEeCCCCCHhHHHH--HhhccCcCCCCceE
Q 011060 142 VATDVAARGLDIPN----------------------V----------DLIIHYELPNDPETFVH--RSGRTGRAGKEGTA 187 (494)
Q Consensus 142 VaTd~~~~Gidip~----------------------v----------~~VI~~~~P~~~~~y~q--r~GR~gR~g~~g~~ 187 (494)
|+|.+.+.|+|+|. + ++||.|++-.+..--+| |++|++|. +.+
T Consensus 431 ~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~sfIR~IEvyra~r~~r~---~rV 507 (814)
T TIGR00596 431 FEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIMYEPDISFIRQLEVYKASRPLRP---LRV 507 (814)
T ss_pred ccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEEECCChHHHHHHHHHHccCCCCC---cEE
Confidence 77888999999997 5 89999997666666666 77777665 567
Q ss_pred EEecCh---hhHHHHHHH
Q 011060 188 ILMFTS---SQRRTVRSL 202 (494)
Q Consensus 188 i~l~~~---~e~~~~~~l 202 (494)
|+++.. .|.+++..+
T Consensus 508 yfL~y~~S~EEq~yl~si 525 (814)
T TIGR00596 508 YFLYYGGSIEEQRYLTSL 525 (814)
T ss_pred EEEEECCcHHHHHHHHHH
Confidence 777653 344444444
No 169
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=97.14 E-value=0.00028 Score=75.35 Aligned_cols=67 Identities=22% Similarity=0.406 Sum_probs=55.7
Q ss_pred EEEEeCChHHHHHHHHHHHc------cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc-----ccccc-CCCCCccE
Q 011060 91 TIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPNVDL 158 (494)
Q Consensus 91 ~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd-----~~~~G-idip~v~~ 158 (494)
+||++||++.|.++++.+.. .+.+..++|+++...+...++. + .+|||+|+ .+.++ +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 99999999999999988873 3568899999998887766555 5 89999997 56666 89999998
Q ss_pred EEE
Q 011060 159 IIH 161 (494)
Q Consensus 159 VI~ 161 (494)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 884
No 170
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=97.10 E-value=0.014 Score=65.89 Aligned_cols=184 Identities=15% Similarity=0.254 Sum_probs=115.8
Q ss_pred HHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCC-ccHH-----HHHHHHHH
Q 011060 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKR-----TILSDLIT 83 (494)
Q Consensus 10 l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~-~~k~-----~~l~~ll~ 83 (494)
+..|-.++-++.+++.+|..+.+ +.++ .++.....+.+..... ..+..++...+.... .... ..+..+..
T Consensus 1279 ~r~ia~q~~k~ir~v~ls~~lan-a~d~--ig~s~~~v~Nf~p~~R-~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~ 1354 (1674)
T KOG0951|consen 1279 MRYIASQLEKKIRVVALSSSLAN-ARDL--IGASSSGVFNFSPSVR-PVPLEIHIQSVDISHFESRMLAMTKPTYTAIVR 1354 (1674)
T ss_pred HHHHHHHHHhheeEEEeehhhcc-chhh--ccccccceeecCcccC-CCceeEEEEEeccchhHHHHHHhhhhHHHHHHH
Confidence 45677777778888888877744 2333 1333333344332211 112222222222221 1111 12334444
Q ss_pred HHccCCeEEEEeCChHHHHHHHHHHHcc-----------------------CcEEEEeCCCCHHHHHHHHhhccCCcEEE
Q 011060 84 VYAKGGKTIVFTQTKRDADEVSLALTSI-----------------------IASEALHGDISQHQRERTLNGFRQGKFTV 140 (494)
Q Consensus 84 ~~~~~~~~iVF~~t~~~~~~l~~~l~~~-----------------------~~~~~lhg~~~~~~R~~~~~~F~~g~~~i 140 (494)
......++|||+++++.|..++..|-.. ++..+=|-+|+......+-.-|..|.++|
T Consensus 1355 ~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v 1434 (1674)
T KOG0951|consen 1355 HAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQV 1434 (1674)
T ss_pred HhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEE
Confidence 4445689999999999998876654310 22223388999999999999999999999
Q ss_pred EEecccccccCCCCCccEEEE-----eC------CCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHH
Q 011060 141 LVATDVAARGLDIPNVDLIIH-----YE------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 141 LVaTd~~~~Gidip~v~~VI~-----~~------~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l 202 (494)
+|...- -.|+-... ++||- || .+.+.....|+.|+|.|+ |.|+++.....+.+++++
T Consensus 1435 ~v~s~~-~~~~~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~---~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1435 CVMSRD-CYGTKLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA---GKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred EEEEcc-cccccccc-eEEEEecceeecccccccccCchhHHHHHhhhhcCC---ccEEEEecCchHHHHHHh
Confidence 988766 77776643 44442 33 456788999999999995 589999988887777664
No 171
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=96.99 E-value=0.00035 Score=46.84 Aligned_cols=17 Identities=47% Similarity=1.134 Sum_probs=15.8
Q ss_pred CccccCCCCccccCCCC
Q 011060 477 GACFNCGKSGHRASECP 493 (494)
Q Consensus 477 ~~c~~c~~~gh~~~~cp 493 (494)
..|.+|++.|||+.|||
T Consensus 5 ~~CqkC~~~GH~tyeC~ 21 (42)
T PF13917_consen 5 VRCQKCGQKGHWTYECP 21 (42)
T ss_pred CcCcccCCCCcchhhCC
Confidence 34999999999999999
No 172
>COG4889 Predicted helicase [General function prediction only]
Probab=96.92 E-value=0.00066 Score=73.35 Aligned_cols=101 Identities=21% Similarity=0.426 Sum_probs=78.8
Q ss_pred CeEEEEeCChHHHHHHHHHHHc--------------cC--cEEEEeCCCCHHHHHHHHh---hccCCcEEEEEecccccc
Q 011060 89 GKTIVFTQTKRDADEVSLALTS--------------II--ASEALHGDISQHQRERTLN---GFRQGKFTVLVATDVAAR 149 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~--------------~~--~~~~lhg~~~~~~R~~~~~---~F~~g~~~iLVaTd~~~~ 149 (494)
.++|-||.+.++...+++.+.. .+ .+..+.|.|...+|...+. .|...+++||--.-.+++
T Consensus 461 ~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSE 540 (1518)
T COG4889 461 QRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSE 540 (1518)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhc
Confidence 3678999999888877776642 12 3444568898888865544 456678899988899999
Q ss_pred cCCCCCccEEEEeCCCCCHhHHHHHhhccCcC--C-CCceEEE
Q 011060 150 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRA--G-KEGTAIL 189 (494)
Q Consensus 150 Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~--g-~~g~~i~ 189 (494)
|+|+|.++.||.+++-.+..+.+|-+||.-|- | +-|..|+
T Consensus 541 GVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIIL 583 (1518)
T COG4889 541 GVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIIL 583 (1518)
T ss_pred CCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEE
Confidence 99999999999999999999999999999993 2 2355554
No 173
>PF14787 zf-CCHC_5: GAG-polyprotein viral zinc-finger; PDB: 1CL4_A 1DSV_A.
Probab=96.91 E-value=0.00039 Score=44.19 Aligned_cols=16 Identities=56% Similarity=0.968 Sum_probs=11.4
Q ss_pred ccccCCCCccccCCCC
Q 011060 478 ACFNCGKSGHRASECP 493 (494)
Q Consensus 478 ~c~~c~~~gh~~~~cp 493 (494)
-|++|++.-|||+||=
T Consensus 4 ~CprC~kg~Hwa~~C~ 19 (36)
T PF14787_consen 4 LCPRCGKGFHWASECR 19 (36)
T ss_dssp C-TTTSSSCS-TTT--
T ss_pred cCcccCCCcchhhhhh
Confidence 4999999999999993
No 174
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.89 E-value=0.0029 Score=65.20 Aligned_cols=68 Identities=18% Similarity=0.303 Sum_probs=48.8
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc-----ccccc-CCCCCcc
Q 011060 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPNVD 157 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd-----~~~~G-idip~v~ 157 (494)
..+||+.||++.|++++..-++ .+.+...+++.+-..+. ++-...++|||||+ ++++| |.++++.
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~----~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k 228 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQL----RFIKRGCDILVATPGRLKDLIERGKISLDNCK 228 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhh----hhhccCccEEEecCchhhhhhhcceeehhhCc
Confidence 5799999999999999988775 35677778874443332 33344789999996 55555 6667777
Q ss_pred EEE
Q 011060 158 LII 160 (494)
Q Consensus 158 ~VI 160 (494)
++|
T Consensus 229 ~~v 231 (482)
T KOG0335|consen 229 FLV 231 (482)
T ss_pred EEE
Confidence 655
No 175
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=96.84 E-value=0.027 Score=61.09 Aligned_cols=69 Identities=10% Similarity=0.187 Sum_probs=52.6
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc-----cccc--cCCCCCc
Q 011060 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR--GLDIPNV 156 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd-----~~~~--Gidip~v 156 (494)
.++||.++|++.+.++++.+.. .+.+..+||+.+...+...++. ..+|||+|+ .+.. .+++..+
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~----~~dIiV~TP~rL~~~l~~~~~~~l~~v 160 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQ----GVDVIIATPGRLIDYVKQHKVVSLHAC 160 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhC----CCCEEEECHHHHHHHHHhccccchhhe
Confidence 5899999999999999887764 3678899999988877666543 578999996 3322 3667777
Q ss_pred cEEEE
Q 011060 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
.+||.
T Consensus 161 ~~lVi 165 (572)
T PRK04537 161 EICVL 165 (572)
T ss_pred eeeEe
Confidence 77663
No 176
>smart00343 ZnF_C2HC zinc finger.
Probab=96.83 E-value=0.00048 Score=41.42 Aligned_cols=15 Identities=67% Similarity=1.688 Sum_probs=14.7
Q ss_pred cccCCCCccccCCCC
Q 011060 479 CFNCGKSGHRASECP 493 (494)
Q Consensus 479 c~~c~~~gh~~~~cp 493 (494)
||+|++.||++++||
T Consensus 2 C~~CG~~GH~~~~C~ 16 (26)
T smart00343 2 CYNCGKEGHIARDCP 16 (26)
T ss_pred CccCCCCCcchhhCC
Confidence 999999999999998
No 177
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=96.72 E-value=0.00054 Score=64.88 Aligned_cols=16 Identities=56% Similarity=1.479 Sum_probs=15.4
Q ss_pred cccCCCCccccCCCCC
Q 011060 479 CFNCGKSGHRASECPN 494 (494)
Q Consensus 479 c~~c~~~gh~~~~cp~ 494 (494)
||+||++|||+.|||.
T Consensus 163 cyrcGkeghwskEcP~ 178 (346)
T KOG0109|consen 163 CYRCGKEGHWSKECPV 178 (346)
T ss_pred heeccccccccccCCc
Confidence 9999999999999994
No 178
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.64 E-value=0.0089 Score=57.95 Aligned_cols=79 Identities=22% Similarity=0.381 Sum_probs=59.4
Q ss_pred HHHhhccCCcEEEEEecccccccCCCCC--------ccEEEEeCCCCCHhHHHHHhhccCcCCCC-ceEEE-ecC--hhh
Q 011060 128 RTLNGFRQGKFTVLVATDVAARGLDIPN--------VDLIIHYELPNDPETFVHRSGRTGRAGKE-GTAIL-MFT--SSQ 195 (494)
Q Consensus 128 ~~~~~F~~g~~~iLVaTd~~~~Gidip~--------v~~VI~~~~P~~~~~y~qr~GR~gR~g~~-g~~i~-l~~--~~e 195 (494)
...++|.+|+..|+|.|++++.||-+.. -.+-|...+||+.+..+|..||+.|.++. .-.|. +++ +-|
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 5567999999999999999999998863 23567789999999999999999999853 33333 333 235
Q ss_pred HHHHHHHHHHh
Q 011060 196 RRTVRSLERDV 206 (494)
Q Consensus 196 ~~~~~~l~~~~ 206 (494)
+++...+.+.+
T Consensus 132 ~Rfas~va~rL 142 (278)
T PF13871_consen 132 RRFASTVARRL 142 (278)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 179
>KOG4400 consensus E3 ubiquitin ligase interacting with arginine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0021 Score=62.45 Aligned_cols=66 Identities=15% Similarity=0.351 Sum_probs=35.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCccccCCCCccccCCCC
Q 011060 416 RSSRSWGSDDEDGFSSSRGGRSF--RSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSSRSFGGACFNCGKSGHRASECP 493 (494)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~c~~c~~~gh~~~~cp 493 (494)
-.|++|+..||...+|......+ ...++.|+.+ +|+ +. .... ....... ..||+||+.|||++|||
T Consensus 93 ~~c~~C~~~gH~~~~c~~~~~~~~~~~~~~~c~~~-----gh~--~~---~~~~-~~~~~~~-~~Cy~Cg~~GH~s~~C~ 160 (261)
T KOG4400|consen 93 AACFNCGEGGHIERDCPEAGKEGSSETSCYSCGKT-----GHR--GC---PDAD-PVDGPKP-AKCYSCGEQGHISDDCP 160 (261)
T ss_pred hhhhhCCCCccchhhCCcccCcccccceeeccCCC-----ccc--cC---cccc-cccCCCC-CccCCCCcCCcchhhCC
Confidence 45778888888888887554332 1223344432 222 10 0000 0000112 45888888888888887
No 180
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=96.56 E-value=0.091 Score=57.74 Aligned_cols=101 Identities=21% Similarity=0.227 Sum_probs=72.5
Q ss_pred HHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCC
Q 011060 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (494)
Q Consensus 76 ~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip 154 (494)
.-...|+..+..+.++-||+.|...++.+++.... ...+..+++.-+..+ + +. -++++|+|=|+++..|+++.
T Consensus 270 tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~--W~~~~VviYT~~itvG~Sf~ 343 (824)
T PF02399_consen 270 TFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ES--WKKYDVVIYTPVITVGLSFE 343 (824)
T ss_pred hHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-cc--ccceeEEEEeceEEEEeccc
Confidence 34455666666778888999999999999988875 466777777655542 2 22 35789999999999999997
Q ss_pred CccE--EEEeCCC----CCHhHHHHHhhccCcCC
Q 011060 155 NVDL--IIHYELP----NDPETFVHRSGRTGRAG 182 (494)
Q Consensus 155 ~v~~--VI~~~~P----~~~~~y~qr~GR~gR~g 182 (494)
...+ |.-|=-| .+..+..|++||.-...
T Consensus 344 ~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~ 377 (824)
T PF02399_consen 344 EKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL 377 (824)
T ss_pred hhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc
Confidence 5532 3333222 35667899999986654
No 181
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.45 E-value=0.013 Score=65.02 Aligned_cols=89 Identities=17% Similarity=0.251 Sum_probs=71.4
Q ss_pred cHHH-HHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc
Q 011060 73 SKRT-ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 73 ~k~~-~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~ 146 (494)
-|.. .+..++..+..+.+++|.+||+..|.+.++.+.+ ++.+..+||+++..+|.++++.+.+|+.+|+|+|..
T Consensus 294 GKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ 373 (681)
T PRK10917 294 GKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHA 373 (681)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHH
Confidence 4443 3334444455677999999999999999888774 378899999999999999999999999999999975
Q ss_pred -ccccCCCCCccEEEE
Q 011060 147 -AARGLDIPNVDLIIH 161 (494)
Q Consensus 147 -~~~Gidip~v~~VI~ 161 (494)
+...+.+.++.+||.
T Consensus 374 ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 374 LIQDDVEFHNLGLVII 389 (681)
T ss_pred HhcccchhcccceEEE
Confidence 444567888998885
No 182
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.43 E-value=0.016 Score=64.08 Aligned_cols=90 Identities=21% Similarity=0.264 Sum_probs=71.4
Q ss_pred cHHHHHHHHH-HHHccCCeEEEEeCChHHHHHHHHHHHc--cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccc
Q 011060 73 SKRTILSDLI-TVYAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 149 (494)
Q Consensus 73 ~k~~~l~~ll-~~~~~~~~~iVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~ 149 (494)
-|..+...++ ..+..+.++||.+||++.+.++++.|++ ...+..+||+++..+|.+++.++.+++.+|+|+|..+..
T Consensus 174 GKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~ 253 (679)
T PRK05580 174 GKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF 253 (679)
T ss_pred hHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc
Confidence 4555544433 3344567999999999999999999986 457899999999999999999999999999999985433
Q ss_pred cCCCCCccEEEEeC
Q 011060 150 GLDIPNVDLIIHYE 163 (494)
Q Consensus 150 Gidip~v~~VI~~~ 163 (494)
+.+.++.+||.-+
T Consensus 254 -~p~~~l~liVvDE 266 (679)
T PRK05580 254 -LPFKNLGLIIVDE 266 (679)
T ss_pred -ccccCCCEEEEEC
Confidence 6677888887543
No 183
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.39 E-value=0.0038 Score=61.96 Aligned_cols=132 Identities=17% Similarity=0.224 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc---
Q 011060 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV--- 146 (494)
Q Consensus 75 ~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~--- 146 (494)
+.+|..|+..- +...++|.+||++.+.++++.+.. ++.+..+-|++....+...+ ++ +..|||||+=
T Consensus 117 LPIl~~LL~~p-~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L--~k--kPhilVaTPGrL~ 191 (476)
T KOG0330|consen 117 LPILQRLLQEP-KLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQL--SK--KPHILVATPGRLW 191 (476)
T ss_pred HHHHHHHHcCC-CCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHh--hc--CCCEEEeCcHHHH
Confidence 45566666532 346899999999999999988873 47899999998766554443 33 5678999982
Q ss_pred ---c-cccCCCCCccEEE--------EeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccC
Q 011060 147 ---A-ARGLDIPNVDLII--------HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (494)
Q Consensus 147 ---~-~~Gidip~v~~VI--------~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (494)
- ..|+.+..+.+.| +.|+-...+.++-++- . ..-.+|++......+++|++..-..+..+.
T Consensus 192 dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip-~------erqt~LfsATMt~kv~kL~rasl~~p~~v~ 264 (476)
T KOG0330|consen 192 DHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIP-R------ERQTFLFSATMTKKVRKLQRASLDNPVKVA 264 (476)
T ss_pred HHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcC-c------cceEEEEEeecchhhHHHHhhccCCCeEEe
Confidence 2 5778887777655 4444434444444443 2 233555555555667777766555555555
Q ss_pred CCCh
Q 011060 215 PPVV 218 (494)
Q Consensus 215 ~p~~ 218 (494)
.++.
T Consensus 265 ~s~k 268 (476)
T KOG0330|consen 265 VSSK 268 (476)
T ss_pred ccch
Confidence 5543
No 184
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.36 E-value=0.018 Score=61.39 Aligned_cols=88 Identities=20% Similarity=0.257 Sum_probs=70.4
Q ss_pred cHHHHHHHHH-HHHccCCeEEEEeCChHHHHHHHHHHHc--cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccc
Q 011060 73 SKRTILSDLI-TVYAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 149 (494)
Q Consensus 73 ~k~~~l~~ll-~~~~~~~~~iVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~ 149 (494)
-|.++...++ ..+..+.++||.+|++..+.++++.|++ ...+..+|++++..+|.++..+..+++.+|+|+|..+..
T Consensus 9 GKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf 88 (505)
T TIGR00595 9 GKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF 88 (505)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc
Confidence 4555544444 3344567999999999999999999986 356889999999999999999999999999999986543
Q ss_pred cCCCCCccEEEE
Q 011060 150 GLDIPNVDLIIH 161 (494)
Q Consensus 150 Gidip~v~~VI~ 161 (494)
+.++++.+||.
T Consensus 89 -~p~~~l~lIIV 99 (505)
T TIGR00595 89 -LPFKNLGLIIV 99 (505)
T ss_pred -CcccCCCEEEE
Confidence 56778888884
No 185
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.30 E-value=0.034 Score=59.35 Aligned_cols=117 Identities=15% Similarity=0.259 Sum_probs=89.5
Q ss_pred cHHHHHHHHHHHH--ccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccC--CcEE-EEEeccc
Q 011060 73 SKRTILSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ--GKFT-VLVATDV 146 (494)
Q Consensus 73 ~k~~~l~~ll~~~--~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~--g~~~-iLVaTd~ 146 (494)
-|+..+..+++.+ ....+++|...-.....-+...|.+ ++....+||.+..++|+.+++.|.. +..+ .|++-.+
T Consensus 729 ~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtA 808 (901)
T KOG4439|consen 729 CKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTA 808 (901)
T ss_pred hHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEcc
Confidence 3444443444333 3456777776666666667777775 6778899999999999999999964 4344 4566678
Q ss_pred ccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEE
Q 011060 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 189 (494)
Q Consensus 147 ~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~ 189 (494)
-+.|||+-..+|+|..|+-|++.-=.|.+-|.-|.|++-.+++
T Consensus 809 GGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 809 GGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred CcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEE
Confidence 8899999999999999999999999999999999997665544
No 186
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.23 E-value=0.027 Score=61.72 Aligned_cols=91 Identities=19% Similarity=0.277 Sum_probs=75.3
Q ss_pred ccHHHHHHHHHHH-HccCCeEEEEeCChHHHHHHHHHHHccC---cEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccc
Q 011060 72 TSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTSII---ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (494)
Q Consensus 72 ~~k~~~l~~ll~~-~~~~~~~iVF~~t~~~~~~l~~~l~~~~---~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~ 147 (494)
..|.+++.+++.. +..++++||.++....+.++.+.|+..| .+..+|+++++.+|.+...+.++|+.+|+|.|-.+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 4666766666644 3567799999999999999999998644 48899999999999999999999999999999865
Q ss_pred cccCCCCCccEEEEeC
Q 011060 148 ARGLDIPNVDLIIHYE 163 (494)
Q Consensus 148 ~~Gidip~v~~VI~~~ 163 (494)
. -.-+++..+||..+
T Consensus 251 v-FaP~~~LgLIIvdE 265 (665)
T PRK14873 251 V-FAPVEDLGLVAIWD 265 (665)
T ss_pred E-EeccCCCCEEEEEc
Confidence 3 36677888888655
No 187
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.96 E-value=0.028 Score=61.73 Aligned_cols=89 Identities=17% Similarity=0.251 Sum_probs=71.2
Q ss_pred cHHH-HHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc
Q 011060 73 SKRT-ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 73 ~k~~-~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~ 146 (494)
-|.. .+..++..+..+.+++|.+||+..++++++.+.+ ++.+..+||+++..+|..+++.+.+|+.+|+|+|..
T Consensus 268 GKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ 347 (630)
T TIGR00643 268 GKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHA 347 (630)
T ss_pred cHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHH
Confidence 4443 2334455555677999999999999999888764 478999999999999999999999999999999985
Q ss_pred cc-ccCCCCCccEEEE
Q 011060 147 AA-RGLDIPNVDLIIH 161 (494)
Q Consensus 147 ~~-~Gidip~v~~VI~ 161 (494)
+- ..+.+.++.+||.
T Consensus 348 ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 348 LIQEKVEFKRLALVII 363 (630)
T ss_pred HHhccccccccceEEE
Confidence 43 3567788888774
No 188
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.87 E-value=0.05 Score=56.06 Aligned_cols=113 Identities=13% Similarity=0.186 Sum_probs=72.5
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc-------ccccCCCCCc
Q 011060 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-------AARGLDIPNV 156 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~-------~~~Gidip~v 156 (494)
.++||.|||++.+-+++...++ .+.+...-|+|+-..++.++.. ..+|+|||+- -+.+.|+.++
T Consensus 253 TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs----~PDIVIATPGRlIDHlrNs~sf~ldsi 328 (691)
T KOG0338|consen 253 TRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRS----RPDIVIATPGRLIDHLRNSPSFNLDSI 328 (691)
T ss_pred eeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhh----CCCEEEecchhHHHHhccCCCccccce
Confidence 4899999999988887766553 3667778899999999999886 5689999982 2446666777
Q ss_pred cEEEEeCCCC--------CHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccc
Q 011060 157 DLIIHYELPN--------DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 212 (494)
Q Consensus 157 ~~VI~~~~P~--------~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~ 212 (494)
.++|.-..-. .....++.+- +..-..|++......++.|.+..-.++-.
T Consensus 329 EVLvlDEADRMLeegFademnEii~lcp-------k~RQTmLFSATMteeVkdL~slSL~kPvr 385 (691)
T KOG0338|consen 329 EVLVLDEADRMLEEGFADEMNEIIRLCP-------KNRQTMLFSATMTEEVKDLASLSLNKPVR 385 (691)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHhcc-------ccccceeehhhhHHHHHHHHHhhcCCCeE
Confidence 7666422211 1222233332 12334566666556666666554444443
No 189
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.81 E-value=0.041 Score=62.66 Aligned_cols=89 Identities=17% Similarity=0.227 Sum_probs=70.3
Q ss_pred cHHHHH-HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc
Q 011060 73 SKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 73 ~k~~~l-~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~ 146 (494)
-|..+. ..++.....+.+++|.+||+..|.+.++.+.+ .+.+..+++.++..++.++++.+++|+.+|+|+|..
T Consensus 484 GKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ 563 (926)
T TIGR00580 484 GKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK 563 (926)
T ss_pred cHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH
Confidence 454432 33344445668999999999999999988875 246788999999999999999999999999999974
Q ss_pred -ccccCCCCCccEEEE
Q 011060 147 -AARGLDIPNVDLIIH 161 (494)
Q Consensus 147 -~~~Gidip~v~~VI~ 161 (494)
+...+.+.++.+||.
T Consensus 564 ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 564 LLQKDVKFKDLGLLII 579 (926)
T ss_pred HhhCCCCcccCCEEEe
Confidence 445677888888774
No 190
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=95.61 E-value=0.04 Score=53.63 Aligned_cols=11 Identities=27% Similarity=0.398 Sum_probs=5.2
Q ss_pred eecCHHHHHHH
Q 011060 338 FDLPEEIAKEL 348 (494)
Q Consensus 338 fdvp~~~a~~~ 348 (494)
.|+.+..|.++
T Consensus 284 ~~~Re~Taski 294 (465)
T KOG3973|consen 284 MDRRERTASKI 294 (465)
T ss_pred cchhhhhhhhh
Confidence 44444444443
No 191
>KOG4400 consensus E3 ubiquitin ligase interacting with arginine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.019 Score=55.77 Aligned_cols=19 Identities=58% Similarity=1.543 Sum_probs=15.9
Q ss_pred CCccccCCCCccccCCCCC
Q 011060 476 GGACFNCGKSGHRASECPN 494 (494)
Q Consensus 476 ~~~c~~c~~~gh~~~~cp~ 494 (494)
++.||.|++.+|+++|||+
T Consensus 164 ~~~c~~c~~~~h~~~~C~~ 182 (261)
T KOG4400|consen 164 GGTCFRCGKVGHGSRDCPS 182 (261)
T ss_pred CCccccCCCcceecccCCc
Confidence 3449999999999999985
No 192
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.41 E-value=0.071 Score=55.24 Aligned_cols=182 Identities=20% Similarity=0.263 Sum_probs=114.9
Q ss_pred CcEEEEeecCChHHHHHHHHHcCCCc-EEEecccccc----ccccceEEEE--EEcC-----CccHHHHH-HHHHHHHcc
Q 011060 21 RQSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDE----KLAEGIKLYA--ISTT-----ATSKRTIL-SDLITVYAK 87 (494)
Q Consensus 21 ~q~il~SAT~~~~v~~~~~~~~~~~~-~v~~~~~~~~----~~~~~i~~~~--~~~~-----~~~k~~~l-~~ll~~~~~ 87 (494)
+|+|+||+-..+.+..+...++.|-. .|........ .+...+.|.+ +.+. ...+.... ..++-.+.+
T Consensus 470 rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k 549 (698)
T KOG2340|consen 470 RQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPDARFKYFVDKIMPQLIK 549 (698)
T ss_pred HHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCchHHHHHHHHhhchhhcc
Confidence 59999999998888888888876532 2322111111 0001111111 1111 11222211 112222211
Q ss_pred --CCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccc--cccCCCCCccEEEEe
Q 011060 88 --GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA--ARGLDIPNVDLIIHY 162 (494)
Q Consensus 88 --~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~--~~Gidip~v~~VI~~ 162 (494)
..-+|||.|+--+--.+..++++ .+....+|--.++..-.++-+-|-.|...||+-|.-+ -+-.+|..|.-||.|
T Consensus 550 ~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfY 629 (698)
T KOG2340|consen 550 RTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFY 629 (698)
T ss_pred cccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEe
Confidence 24679999999988888888875 4555555555556666777788999999999999743 467889999999999
Q ss_pred CCCCCHhHH---HHHhhccCcCC----CCceEEEecChhhHHHHHHH
Q 011060 163 ELPNDPETF---VHRSGRTGRAG----KEGTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 163 ~~P~~~~~y---~qr~GR~gR~g----~~g~~i~l~~~~e~~~~~~l 202 (494)
.+|..+.=| +.+.+|+.-.| ..-.|.++|+..+.-.+..+
T Consensus 630 qpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 630 QPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENI 676 (698)
T ss_pred cCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHh
Confidence 999998766 66777765433 34578889998776444443
No 193
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=95.14 E-value=0.15 Score=44.48 Aligned_cols=50 Identities=22% Similarity=0.286 Sum_probs=36.9
Q ss_pred EeCCCCHHHHHHHHhhccCCc-EEEEEecccccccCCCCCc--cEEEEeCCCC
Q 011060 117 LHGDISQHQRERTLNGFRQGK-FTVLVATDVAARGLDIPNV--DLIIHYELPN 166 (494)
Q Consensus 117 lhg~~~~~~R~~~~~~F~~g~-~~iLVaTd~~~~Gidip~v--~~VI~~~~P~ 166 (494)
+.-.....+...+++.|++.. ..||++|.-+++|||+|+- +.||...+|.
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred EEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 333344556788899998654 3799999889999999964 5788777663
No 194
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=94.98 E-value=0.42 Score=47.83 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=41.0
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc-----------CcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc
Q 011060 88 GGKTIVFTQTKRDADEVSLALTSI-----------IASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~-----------~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd 145 (494)
+.-.||.|++++.+.+.++.+... +.+..--|+++-.++..++++ .+.|+|||+
T Consensus 246 GP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~----GvHivVATP 310 (610)
T KOG0341|consen 246 GPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRR----GVHIVVATP 310 (610)
T ss_pred CCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhc----CeeEEEcCc
Confidence 456799999999998877766532 234444688998888877765 678999997
No 195
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.75 E-value=0.13 Score=57.53 Aligned_cols=60 Identities=20% Similarity=0.376 Sum_probs=52.0
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcc------CcEEE-EeCCCCHHHHHHHHhhccCCcEEEEEeccc
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTSI------IASEA-LHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~------~~~~~-lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~ 146 (494)
+++++++.+||...+.++++.|.+. +.+.. +|+.|+.+++++++++|.+|.++|||+|..
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 5689999999999999999888741 33333 999999999999999999999999999974
No 196
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.74 E-value=0.11 Score=60.55 Aligned_cols=77 Identities=17% Similarity=0.166 Sum_probs=64.0
Q ss_pred HccCCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc-ccccCCCCCccE
Q 011060 85 YAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARGLDIPNVDL 158 (494)
Q Consensus 85 ~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~-~~~Gidip~v~~ 158 (494)
...+.+++|.+||+..|.+++..+.+ .+.+..+++..+..++.++++.++++..+|||+|.- +...+.+.++.+
T Consensus 646 ~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~l 725 (1147)
T PRK10689 646 VENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGL 725 (1147)
T ss_pred HHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCE
Confidence 34568999999999999999988874 246778999999999999999999999999999964 444567778888
Q ss_pred EEE
Q 011060 159 IIH 161 (494)
Q Consensus 159 VI~ 161 (494)
||.
T Consensus 726 LVI 728 (1147)
T PRK10689 726 LIV 728 (1147)
T ss_pred EEE
Confidence 774
No 197
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=94.58 E-value=0.19 Score=44.02 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=31.9
Q ss_pred HHHHHHhhccCCcE---EEEEeccc--ccccCCCCC--ccEEEEeCCCC
Q 011060 125 QRERTLNGFRQGKF---TVLVATDV--AARGLDIPN--VDLIIHYELPN 166 (494)
Q Consensus 125 ~R~~~~~~F~~g~~---~iLVaTd~--~~~Gidip~--v~~VI~~~~P~ 166 (494)
+..++++.|++... .||+++.- +++|||+|+ ++.||...+|.
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 44678888886443 68888877 999999997 46788777763
No 198
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.51 E-value=0.31 Score=49.13 Aligned_cols=70 Identities=14% Similarity=0.228 Sum_probs=47.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHH----ccCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc------ccccCCCCCcc
Q 011060 88 GGKTIVFTQTKRDADEVSLALT----SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPNVD 157 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~------~~~Gidip~v~ 157 (494)
...+||+++|++.+.++..... +++...+++|+-...++.+.+++ ...|+|||+- ..--||+..++
T Consensus 294 ~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~eqie~lkr----gveiiiatPgrlndL~~~n~i~l~siT 369 (629)
T KOG0336|consen 294 GPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKR----GVEIIIATPGRLNDLQMDNVINLASIT 369 (629)
T ss_pred CCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhc----CceEEeeCCchHhhhhhcCeeeeeeeE
Confidence 4578999999998887655544 35677777777655555444443 6789999972 33446677777
Q ss_pred EEEE
Q 011060 158 LIIH 161 (494)
Q Consensus 158 ~VI~ 161 (494)
++|.
T Consensus 370 YlVl 373 (629)
T KOG0336|consen 370 YLVL 373 (629)
T ss_pred EEEe
Confidence 7663
No 199
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=94.37 E-value=0.064 Score=48.42 Aligned_cols=73 Identities=15% Similarity=0.220 Sum_probs=40.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCccccCCCCccccCCCC
Q 011060 417 SSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSSRSFGGACFNCGKSGHRASECP 493 (494)
Q Consensus 417 ~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~c~~c~~~gh~~~~cp 493 (494)
-|+.||..||.+++|. +.......+..|+...|..+..=..+...... +.....--..||+|+-.+|++.||+
T Consensus 99 ~C~~Cg~~GH~~~dC~-P~~~~~~~C~~C~s~~H~s~~Cp~~~k~y~~~---~~~~~~~~~~cy~c~~~~H~~~dc~ 171 (190)
T COG5082 99 KCYNCGETGHLSRDCN-PSKDQQKSCFDCNSTRHSSEDCPSIWKHYVLN---NGDGHPIKKFCYSCGSAGHFGDDCK 171 (190)
T ss_pred ccccccccCccccccC-cccccCcceeccCCCccccccCcccccccccc---cCCCcceeeeccccCCccccCCCCC
Confidence 4788999999999995 22222234555554444332221000000010 0000112247999999999999997
No 200
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=93.97 E-value=0.031 Score=65.59 Aligned_cols=94 Identities=21% Similarity=0.379 Sum_probs=76.8
Q ss_pred CeEEEEeCChHHHHHHHHHHHc--cCcEEEEeCCCC-----------HHHHHHHHhhccCCcEEEEEecccccccCCCCC
Q 011060 89 GKTIVFTQTKRDADEVSLALTS--IIASEALHGDIS-----------QHQRERTLNGFRQGKFTVLVATDVAARGLDIPN 155 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~-----------~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~ 155 (494)
-..|+||+-+..+..+.+.+.+ .+.+..+.|.+. +..+.+++..|....+++|++|.++..|+|++.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 3569999999998888888774 233333444322 224688999999999999999999999999999
Q ss_pred ccEEEEeCCCCCHhHHHHHhhccCcCC
Q 011060 156 VDLIIHYELPNDPETFVHRSGRTGRAG 182 (494)
Q Consensus 156 v~~VI~~~~P~~~~~y~qr~GR~gR~g 182 (494)
++.|+.++.|.....|+|..||+-++.
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999986653
No 201
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=93.90 E-value=0.17 Score=55.82 Aligned_cols=92 Identities=23% Similarity=0.277 Sum_probs=75.2
Q ss_pred cCCccHHHHHHHHHHH-HccCCeEEEEeCChHHHHHHHHHHHc--cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc
Q 011060 69 TTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 69 ~~~~~k~~~l~~ll~~-~~~~~~~iVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd 145 (494)
+.-+.|.++...++.. +..++++||.+|-+....++...|.. +..+.++|++|++.+|..+..+.++|+.+|+|.|-
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtR 304 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTR 304 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEec
Confidence 3345677777776654 45678999999999999999988885 46789999999999999999999999999999997
Q ss_pred cccccCCCCCccEEEE
Q 011060 146 VAARGLDIPNVDLIIH 161 (494)
Q Consensus 146 ~~~~Gidip~v~~VI~ 161 (494)
.+ --.-++++-+||.
T Consensus 305 SA-lF~Pf~~LGLIIv 319 (730)
T COG1198 305 SA-LFLPFKNLGLIIV 319 (730)
T ss_pred hh-hcCchhhccEEEE
Confidence 64 3456678888774
No 202
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=93.86 E-value=0.23 Score=53.83 Aligned_cols=104 Identities=21% Similarity=0.310 Sum_probs=86.0
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc-C------------------cEEEEeCCCCHHHHHHHHhhccCCc---EEEEEecc
Q 011060 88 GGKTIVFTQTKRDADEVSLALTSI-I------------------ASEALHGDISQHQRERTLNGFRQGK---FTVLVATD 145 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~-~------------------~~~~lhg~~~~~~R~~~~~~F~~g~---~~iLVaTd 145 (494)
+.++|||.......+.|.+.|.+. + .-.-+.|..+..+|++.+++|.+.- .-+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 568999999998888888888642 1 2335678889999999999998632 35789999
Q ss_pred cccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEec
Q 011060 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMF 191 (494)
Q Consensus 146 ~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~ 191 (494)
....||++-..+-+|.||.-|++.--.|.+-|.-|.|++-.|+++-
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYR 844 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYR 844 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEe
Confidence 9999999998889999999999999999999999999777666653
No 203
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=93.74 E-value=0.4 Score=52.67 Aligned_cols=70 Identities=23% Similarity=0.240 Sum_probs=52.8
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc------cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc-----cccc-cCCCCC
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPN 155 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd-----~~~~-Gidip~ 155 (494)
..++||.|||++.+.++++.+.. .+.+..+||+.+...+...++ ...+|+|+|+ .+.+ .+++.+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~----~~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR----QGPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhc----CCCCEEEECHHHHHHHHHcCCcchhh
Confidence 35899999999999999887653 467888999988776655543 2568999995 3333 478888
Q ss_pred ccEEEE
Q 011060 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+.+||.
T Consensus 150 l~~lVl 155 (629)
T PRK11634 150 LSGLVL 155 (629)
T ss_pred ceEEEe
Confidence 888774
No 204
>PRK14701 reverse gyrase; Provisional
Probab=92.90 E-value=0.31 Score=58.75 Aligned_cols=60 Identities=22% Similarity=0.316 Sum_probs=52.9
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-------cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS-------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~ 146 (494)
++.++||.+||+..+.++++.|.. .+.+..+||+++..++.++++.++++..+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 456899999999999999888875 245788999999999999999999999999999984
No 205
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=92.88 E-value=0.038 Score=38.72 Aligned_cols=17 Identities=53% Similarity=1.411 Sum_probs=15.7
Q ss_pred ccccCCCCccccCCCCC
Q 011060 478 ACFNCGKSGHRASECPN 494 (494)
Q Consensus 478 ~c~~c~~~gh~~~~cp~ 494 (494)
-||+||..||..++||.
T Consensus 33 ~C~~C~~~gH~~~~C~k 49 (49)
T PF14392_consen 33 FCFHCGRIGHSDKECPK 49 (49)
T ss_pred hhcCCCCcCcCHhHcCC
Confidence 39999999999999994
No 206
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=92.32 E-value=0.3 Score=57.20 Aligned_cols=60 Identities=18% Similarity=0.383 Sum_probs=50.7
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcc-----Cc---EEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTSI-----IA---SEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~-----~~---~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~ 146 (494)
.+.++||.+||+..+.++++.+... +. +..+||+++..++...++.++++..+|||+|+-
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 4578999999999999998888742 22 235899999999999999999988999999983
No 207
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=92.21 E-value=0.25 Score=51.62 Aligned_cols=52 Identities=27% Similarity=0.387 Sum_probs=46.8
Q ss_pred eEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc
Q 011060 90 KTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 90 ~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd 145 (494)
-.|||++|++.|-++...|.. .+.+..+.|+|....+++++++ .-+|+|||+
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 389999999999999999873 5889999999999999999988 567999998
No 208
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=92.15 E-value=0.68 Score=49.99 Aligned_cols=85 Identities=19% Similarity=0.291 Sum_probs=71.6
Q ss_pred HHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccc-ccc
Q 011060 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-ARG 150 (494)
Q Consensus 77 ~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~-~~G 150 (494)
++..++..+..+.++.+.+||.-.|++-+..+.+ ++.+..|.|.+...+|.+++++..+|+++|+|.|-++ ...
T Consensus 300 A~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~ 379 (677)
T COG1200 300 ALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDK 379 (677)
T ss_pred HHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcc
Confidence 4455556666788999999998888887777764 4679999999999999999999999999999999764 567
Q ss_pred CCCCCccEEEE
Q 011060 151 LDIPNVDLIIH 161 (494)
Q Consensus 151 idip~v~~VI~ 161 (494)
+++.++-+||.
T Consensus 380 V~F~~LgLVIi 390 (677)
T COG1200 380 VEFHNLGLVII 390 (677)
T ss_pred eeecceeEEEE
Confidence 88888888885
No 209
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=91.74 E-value=0.78 Score=48.42 Aligned_cols=69 Identities=19% Similarity=0.253 Sum_probs=53.6
Q ss_pred CeEEEEeCChHHHHHHHHHHHc------cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc-----ccc-ccCCCCCc
Q 011060 89 GKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAA-RGLDIPNV 156 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd-----~~~-~Gidip~v 156 (494)
.++||.+||++.+.++++.+.. .+.+..++|+.+...+...++ ...+|+|+|+ .+. ..+++.++
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~l 148 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDAL 148 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHHC
Confidence 3799999999999999887763 367888999998877665554 3678999995 333 35788899
Q ss_pred cEEEE
Q 011060 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
.+||.
T Consensus 149 ~~lVi 153 (460)
T PRK11776 149 NTLVL 153 (460)
T ss_pred CEEEE
Confidence 98874
No 210
>PF15288 zf-CCHC_6: Zinc knuckle
Probab=91.17 E-value=0.11 Score=34.36 Aligned_cols=16 Identities=50% Similarity=1.173 Sum_probs=14.2
Q ss_pred ccccCCCCcccc--CCCC
Q 011060 478 ACFNCGKSGHRA--SECP 493 (494)
Q Consensus 478 ~c~~c~~~gh~~--~~cp 493 (494)
.|-+||..||++ +.||
T Consensus 3 kC~~CG~~GH~~t~k~CP 20 (40)
T PF15288_consen 3 KCKNCGAFGHMRTNKRCP 20 (40)
T ss_pred cccccccccccccCccCC
Confidence 499999999998 6788
No 211
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.56 E-value=0.098 Score=49.92 Aligned_cols=21 Identities=38% Similarity=1.037 Sum_probs=17.9
Q ss_pred CCCCCccccCCCCccccCCCC
Q 011060 473 RSFGGACFNCGKSGHRASECP 493 (494)
Q Consensus 473 ~~~~~~c~~c~~~gh~~~~cp 493 (494)
.-.|--||+||+.|||-..||
T Consensus 173 pPpgY~CyRCGqkgHwIqnCp 193 (427)
T COG5222 173 PPPGYVCYRCGQKGHWIQNCP 193 (427)
T ss_pred CCCceeEEecCCCCchhhcCC
Confidence 344557999999999999998
No 212
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=90.43 E-value=1.2 Score=46.48 Aligned_cols=69 Identities=16% Similarity=0.232 Sum_probs=53.3
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc------ccccCCCCCcc
Q 011060 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPNVD 157 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~------~~~Gidip~v~ 157 (494)
.++||.+||++.+.++++.+.. .+.+..++|+.+...+..++. +..+|||+|+- ....+++.++.
T Consensus 74 ~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~~IlV~Tp~rl~~~~~~~~~~~~~v~ 149 (434)
T PRK11192 74 PRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFS----ENQDIVVATPGRLLQYIKEENFDCRAVE 149 (434)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCcCcccCC
Confidence 5899999999999998876653 467889999998887766654 35689999972 23456788888
Q ss_pred EEEE
Q 011060 158 LIIH 161 (494)
Q Consensus 158 ~VI~ 161 (494)
+||.
T Consensus 150 ~lVi 153 (434)
T PRK11192 150 TLIL 153 (434)
T ss_pred EEEE
Confidence 8774
No 213
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=90.22 E-value=0.21 Score=51.12 Aligned_cols=42 Identities=24% Similarity=0.483 Sum_probs=31.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCC
Q 011060 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSSRSFGGACFNCGKSGHRASECPN 494 (494)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~c~~c~~~gh~~~~cp~ 494 (494)
..|..||..||..++|... . .+| ..-|+.||.-||+++||+.
T Consensus 262 ~~c~~cg~~~H~q~~cp~r-----~-------------~~~-------------------~n~c~~cg~~gH~~~dc~~ 303 (554)
T KOG0119|consen 262 RACRNCGSTGHKQYDCPGR-----I-------------PNT-------------------TNVCKICGPLGHISIDCKV 303 (554)
T ss_pred ccccccCCCccccccCCcc-----c-------------ccc-------------------cccccccCCcccccccCCC
Confidence 5699999999999999632 0 011 0139999999999999973
No 214
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.19 E-value=1.1 Score=47.51 Aligned_cols=75 Identities=23% Similarity=0.315 Sum_probs=59.9
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccc-ccc------C-CCCCcc
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-ARG------L-DIPNVD 157 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~-~~G------i-dip~v~ 157 (494)
....+||.+|+++.+++....|.. ++.+..+++..+..++..++..+..+..+||++|+-. ... + ....+.
T Consensus 50 ~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~ 129 (470)
T TIGR00614 50 SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGIT 129 (470)
T ss_pred cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcC
Confidence 457899999999999888887774 7889999999999999999999999999999999732 111 1 345667
Q ss_pred EEEE
Q 011060 158 LIIH 161 (494)
Q Consensus 158 ~VI~ 161 (494)
+||.
T Consensus 130 ~iVi 133 (470)
T TIGR00614 130 LIAV 133 (470)
T ss_pred EEEE
Confidence 6663
No 215
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=89.90 E-value=1.3 Score=50.75 Aligned_cols=89 Identities=17% Similarity=0.289 Sum_probs=72.2
Q ss_pred cHHHH-HHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcc-----CcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc-
Q 011060 73 SKRTI-LSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATD- 145 (494)
Q Consensus 73 ~k~~~-l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd- 145 (494)
-|.++ +....+....+++|.|.+||.=.|++=++.+++. +.+..|..=.+.+++..+++..++|+++|+|.|-
T Consensus 627 GKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr 706 (1139)
T COG1197 627 GKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR 706 (1139)
T ss_pred cHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH
Confidence 34443 3444445556789999999999999988888853 4577788888999999999999999999999994
Q ss_pred cccccCCCCCccEEEE
Q 011060 146 VAARGLDIPNVDLIIH 161 (494)
Q Consensus 146 ~~~~Gidip~v~~VI~ 161 (494)
++...|-+.++-+||.
T Consensus 707 LL~kdv~FkdLGLlII 722 (1139)
T COG1197 707 LLSKDVKFKDLGLLII 722 (1139)
T ss_pred hhCCCcEEecCCeEEE
Confidence 6788888999998885
No 216
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=89.36 E-value=4.7 Score=42.17 Aligned_cols=69 Identities=30% Similarity=0.379 Sum_probs=56.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc--cC---cEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc------cccccCCCCCc
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS--II---ASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNV 156 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~--~~---~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd------~~~~Gidip~v 156 (494)
++++|+..||+-.+.+-+..+.+ ++ .+..|.|..++++|..... +.+|+|||+ +.+-=||+.++
T Consensus 58 ~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~-----~~kVfvaTPQvveNDl~~Grid~~dv 132 (542)
T COG1111 58 GGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWA-----KKKVFVATPQVVENDLKAGRIDLDDV 132 (542)
T ss_pred CCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHh-----hCCEEEeccHHHHhHHhcCccChHHc
Confidence 34899999999999998888875 33 4779999999999988776 467999996 45555899999
Q ss_pred cEEEE
Q 011060 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
.++|.
T Consensus 133 ~~lif 137 (542)
T COG1111 133 SLLIF 137 (542)
T ss_pred eEEEe
Confidence 98884
No 217
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=89.26 E-value=1.7 Score=49.01 Aligned_cols=106 Identities=18% Similarity=0.324 Sum_probs=66.0
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc-------cc--ccCCCC
Q 011060 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-------AA--RGLDIP 154 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~-------~~--~Gidip 154 (494)
.-+||.|+|++.+.+|.+.+.. .+.+++.+|+...+++.. ..+.| ..|+|||+- +. +=.++-
T Consensus 439 Pi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qia---elkRg-~eIvV~tpGRmiD~l~~n~grvtnlr 514 (997)
T KOG0334|consen 439 PIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIA---ELKRG-AEIVVCTPGRMIDILCANSGRVTNLR 514 (997)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHH---HHhcC-CceEEeccchhhhhHhhcCCcccccc
Confidence 4579999999999999988774 467888888887766544 44556 789999971 11 123444
Q ss_pred CccEEEE------eCC---CCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHh
Q 011060 155 NVDLIIH------YEL---PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (494)
Q Consensus 155 ~v~~VI~------~~~---P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~ 206 (494)
.+++|+. +|+ |. ....+|.+ |+-|. .++++......+..+.+..
T Consensus 515 R~t~lv~deaDrmfdmgfePq-~~~Ii~nl-rpdrQ------tvlfSatfpr~m~~la~~v 567 (997)
T KOG0334|consen 515 RVTYLVLDEADRMFDMGFEPQ-ITRILQNL-RPDRQ------TVLFSATFPRSMEALARKV 567 (997)
T ss_pred ccceeeechhhhhheeccCcc-cchHHhhc-chhhh------hhhhhhhhhHHHHHHHHHh
Confidence 5556652 222 33 33378887 54442 3344444444466665544
No 218
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=89.18 E-value=2.9 Score=38.44 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=50.4
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc-----ccc-cCCCCCc
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AAR-GLDIPNV 156 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~-----~~~-Gidip~v 156 (494)
..++||.++|+..+.+.+..+.. .+.+..+|++.+..+....++ ....|+|+|.. +.. -.+++++
T Consensus 69 ~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~l 144 (203)
T cd00268 69 GPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSKV 144 (203)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhhC
Confidence 45899999999999988777653 356788999988776655444 46789999952 222 2566777
Q ss_pred cEEEE
Q 011060 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
++||.
T Consensus 145 ~~lIv 149 (203)
T cd00268 145 KYLVL 149 (203)
T ss_pred CEEEE
Confidence 77763
No 219
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=88.53 E-value=0.72 Score=50.32 Aligned_cols=54 Identities=24% Similarity=0.431 Sum_probs=46.4
Q ss_pred HhhccCCcEEEEEecccccccCCCCCccEE--------EEeCCCCCHhHHHHHhhccCcCCC
Q 011060 130 LNGFRQGKFTVLVATDVAARGLDIPNVDLI--------IHYELPNDPETFVHRSGRTGRAGK 183 (494)
Q Consensus 130 ~~~F~~g~~~iLVaTd~~~~Gidip~v~~V--------I~~~~P~~~~~y~qr~GR~gR~g~ 183 (494)
-++|.+|+..|-|-+.+++.||-+..-.-| |-..+||+.+.-||..|||.|.++
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQ 911 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQ 911 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccc
Confidence 458899999999999999999999765544 457899999999999999999773
No 220
>PTZ00110 helicase; Provisional
Probab=87.75 E-value=2.3 Score=45.93 Aligned_cols=69 Identities=13% Similarity=0.211 Sum_probs=51.2
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc-----ccccc-CCCCCcc
Q 011060 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPNVD 157 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd-----~~~~G-idip~v~ 157 (494)
..+||.+||++.|.++.+.+.+ .+.+..++++.+...+...+.. ..+|||+|+ .+..+ +++..++
T Consensus 204 p~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~----~~~IlVaTPgrL~d~l~~~~~~l~~v~ 279 (545)
T PTZ00110 204 PIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRR----GVEILIACPGRLIDFLESNVTNLRRVT 279 (545)
T ss_pred cEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHc----CCCEEEECHHHHHHHHHcCCCChhhCc
Confidence 4689999999999998888774 3567888999887665544432 468999996 34333 6778888
Q ss_pred EEEE
Q 011060 158 LIIH 161 (494)
Q Consensus 158 ~VI~ 161 (494)
+||.
T Consensus 280 ~lVi 283 (545)
T PTZ00110 280 YLVL 283 (545)
T ss_pred EEEe
Confidence 7774
No 221
>PRK13766 Hef nuclease; Provisional
Probab=87.60 E-value=7.2 Score=44.11 Aligned_cols=70 Identities=26% Similarity=0.397 Sum_probs=53.6
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcc--C---cEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc------ccccCCCCC
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTSI--I---ASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPN 155 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~--~---~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~------~~~Gidip~ 155 (494)
...++||.|+|+..+++.++.+.+. + .+..++|+++..+|.++... ..|+|+|+- +..-+++.+
T Consensus 57 ~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~~-----~~iiv~T~~~l~~~l~~~~~~~~~ 131 (773)
T PRK13766 57 KGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEK-----AKVIVATPQVIENDLIAGRISLED 131 (773)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHhC-----CCEEEECHHHHHHHHHcCCCChhh
Confidence 4689999999999998888877752 2 67889999999888776643 469999962 234467778
Q ss_pred ccEEEE
Q 011060 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+++||.
T Consensus 132 ~~liVv 137 (773)
T PRK13766 132 VSLLIF 137 (773)
T ss_pred CcEEEE
Confidence 888774
No 222
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=87.51 E-value=2.3 Score=46.48 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=58.9
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccccc------ccCCCCCccEE
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA------RGLDIPNVDLI 159 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~------~Gidip~v~~V 159 (494)
..+.+||.+|++..++.....|.. ++.+..+|+.++..++..+++.+..+.++||+.|+--- .-+....+.+|
T Consensus 52 ~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~i 131 (591)
T TIGR01389 52 LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALV 131 (591)
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEE
Confidence 457899999999998887777774 78899999999999999999999999999999886321 12333456666
Q ss_pred E
Q 011060 160 I 160 (494)
Q Consensus 160 I 160 (494)
|
T Consensus 132 V 132 (591)
T TIGR01389 132 A 132 (591)
T ss_pred E
Confidence 5
No 223
>PRK09401 reverse gyrase; Reviewed
Probab=87.49 E-value=1.7 Score=51.08 Aligned_cols=73 Identities=22% Similarity=0.361 Sum_probs=54.6
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcc-----CcE--EEEeCCCCHHHHHHHHhhccCCcEEEEEecc-----cccccCCCC
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTSI-----IAS--EALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARGLDIP 154 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~-----~~~--~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd-----~~~~Gidip 154 (494)
++.++||.+||+..+.++++.++.. +.+ ...|+.++..++.+..+.++++..+|+|+|+ .+. .+...
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~ 200 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKK 200 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hcccc
Confidence 4678999999999999999988742 233 3446677788888888999988899999996 222 34444
Q ss_pred CccEEE
Q 011060 155 NVDLII 160 (494)
Q Consensus 155 ~v~~VI 160 (494)
.+++||
T Consensus 201 ~~~~lV 206 (1176)
T PRK09401 201 KFDFVF 206 (1176)
T ss_pred ccCEEE
Confidence 467666
No 224
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=87.15 E-value=0.21 Score=54.82 Aligned_cols=118 Identities=15% Similarity=0.200 Sum_probs=91.7
Q ss_pred ccHHHHHHHHHHHHcc-C-CeEEEEeCChHHHHHHHHHHH-ccCcEEEEeCCCCHHHHHHHHhhccCCcE--EEEEeccc
Q 011060 72 TSKRTILSDLITVYAK-G-GKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKF--TVLVATDV 146 (494)
Q Consensus 72 ~~k~~~l~~ll~~~~~-~-~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~~--~iLVaTd~ 146 (494)
..|+..+..++..... . .++|||+.-...+..+...|. +.+....+.|.|+..+|.+.+..|..+.. -.|++..+
T Consensus 521 s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slka 600 (674)
T KOG1001|consen 521 SSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKA 600 (674)
T ss_pred hhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHH
Confidence 3444444444443211 1 389999999988888887776 36677788899999999999999995432 24678889
Q ss_pred ccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEE
Q 011060 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 189 (494)
Q Consensus 147 ~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~ 189 (494)
...|+++-...+|+..|+=|++..-.|.+-|+.|.|+.-.+.+
T Consensus 601 g~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 601 GKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred hhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 9999999999999999999999999999999999885544333
No 225
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=87.06 E-value=2.1 Score=44.71 Aligned_cols=69 Identities=10% Similarity=0.193 Sum_probs=51.3
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc-----c-cccCCCCCcc
Q 011060 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----A-ARGLDIPNVD 157 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~-----~-~~Gidip~v~ 157 (494)
.++||.+||++.|.++++.+.. .+.+..++|+.+...+...++ ...+|||+|+- + ..-+++..+.
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~~IlV~TP~~l~~~l~~~~~~l~~v~ 159 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLE----SGVDILIGTTGRLIDYAKQNHINLGAIQ 159 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEECHHHHHHHHHcCCccccccc
Confidence 5799999999999998776552 467888999987666554443 25689999972 2 2357788888
Q ss_pred EEEE
Q 011060 158 LIIH 161 (494)
Q Consensus 158 ~VI~ 161 (494)
+||.
T Consensus 160 ~lVi 163 (423)
T PRK04837 160 VVVL 163 (423)
T ss_pred EEEE
Confidence 8774
No 226
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=86.96 E-value=4.7 Score=35.55 Aligned_cols=69 Identities=20% Similarity=0.299 Sum_probs=49.9
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHH-HHHHHHhhccCCcEEEEEeccc------ccccCCCCCc
Q 011060 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQH-QRERTLNGFRQGKFTVLVATDV------AARGLDIPNV 156 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~-~R~~~~~~F~~g~~~iLVaTd~------~~~Gidip~v 156 (494)
.++||.+|++..++++.+.+.. .+.+..+|++.+.. +....+ .+..+|+|+|.. ....+++..+
T Consensus 45 ~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv~T~~~l~~~~~~~~~~~~~~ 120 (169)
T PF00270_consen 45 ARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL----SNQADILVTTPEQLLDLISNGKINISRL 120 (169)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----HTTSSEEEEEHHHHHHHHHTTSSTGTTE
T ss_pred ceEEEEeecccccccccccccccccccccccccccccccccccccccc----cccccccccCcchhhccccccccccccc
Confidence 4999999999999999988874 25788899998855 333444 446789999962 2223466677
Q ss_pred cEEEE
Q 011060 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
++||.
T Consensus 121 ~~iVi 125 (169)
T PF00270_consen 121 SLIVI 125 (169)
T ss_dssp SEEEE
T ss_pred eeecc
Confidence 77664
No 227
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=85.88 E-value=3 Score=48.22 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=50.8
Q ss_pred cCCeEEEEeCChHHHH-HHHHHHHccCcEEEEeCCCCHHHHHHHHhhccC--CcEEEEEeccc
Q 011060 87 KGGKTIVFTQTKRDAD-EVSLALTSIIASEALHGDISQHQRERTLNGFRQ--GKFTVLVATDV 146 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~-~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~F~~--g~~~iLVaTd~ 146 (494)
..+.+||.+|+++.+. ++..++..++.+..+.++++..++.++++.+.. ++++||++|+-
T Consensus 499 ~~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPE 561 (1195)
T PLN03137 499 CPGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPE 561 (1195)
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChH
Confidence 3578999999999987 455555568999999999999999999998876 88999999983
No 228
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=85.58 E-value=0.79 Score=40.81 Aligned_cols=17 Identities=35% Similarity=1.140 Sum_probs=15.0
Q ss_pred ccccCCCCccccCCCCC
Q 011060 478 ACFNCGKSGHRASECPN 494 (494)
Q Consensus 478 ~c~~c~~~gh~~~~cp~ 494 (494)
.|++||+.|||.+.|-+
T Consensus 102 ~~~r~G~rg~~~r~~~~ 118 (195)
T KOG0107|consen 102 FCYRCGERGHIGRNCKD 118 (195)
T ss_pred ccccCCCcccccccccc
Confidence 39999999999999954
No 229
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=85.22 E-value=4.2 Score=43.15 Aligned_cols=70 Identities=10% Similarity=0.175 Sum_probs=50.9
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc------ccccCCCCCcc
Q 011060 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPNVD 157 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~------~~~Gidip~v~ 157 (494)
.++||.++|++.+.++++.+.. .+.+..++|+.+...+.+ .+.....+|||+|+- ....+.+..++
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~---~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~ 239 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLK---QLEARFCDILVATPGRLLDFNQRGEVHLDMVE 239 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHH---HHhCCCCCEEEECHHHHHHHHHcCCcccccCc
Confidence 5799999999999998887763 367888999877655433 334456789999972 22346677788
Q ss_pred EEEE
Q 011060 158 LIIH 161 (494)
Q Consensus 158 ~VI~ 161 (494)
+||.
T Consensus 240 ~lVi 243 (475)
T PRK01297 240 VMVL 243 (475)
T ss_pred eEEe
Confidence 7774
No 230
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=84.09 E-value=5.2 Score=43.86 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=52.2
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd 145 (494)
..+.+||.+|+++.+.+....|.. ++.+..+++.++.+++..+++..+.+++++|++|+
T Consensus 64 ~~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 64 LDGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred cCCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 457899999999999988888774 78889999999999999999999999999999985
No 231
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=83.17 E-value=13 Score=35.63 Aligned_cols=88 Identities=15% Similarity=0.212 Sum_probs=63.7
Q ss_pred cCcEEEEeCCCCHHHHHHHHhhccCCc----EEEEEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccC-cCCCCc
Q 011060 111 IIASEALHGDISQHQRERTLNGFRQGK----FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG-RAGKEG 185 (494)
Q Consensus 111 ~~~~~~lhg~~~~~~R~~~~~~F~~g~----~~iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~g-R~g~~g 185 (494)
.+.+..++++.+... -.+.++. ..|+|.=+.++||+.++++.+.....-+...+++.||.=--| |.|-..
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 488888987755433 3444443 889999999999999999988888888888999999853333 444456
Q ss_pred eEEEecChhhHHHHHHHH
Q 011060 186 TAILMFTSSQRRTVRSLE 203 (494)
Q Consensus 186 ~~i~l~~~~e~~~~~~l~ 203 (494)
.|-++.++.-...+..+.
T Consensus 185 l~Ri~~~~~l~~~f~~i~ 202 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIA 202 (239)
T ss_pred ceEEecCHHHHHHHHHHH
Confidence 777777776555555543
No 232
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=82.65 E-value=3.6 Score=49.27 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=53.3
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----------------cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc----
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS-----------------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV---- 146 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----------------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~---- 146 (494)
..++|+.+|+++.+.++.+.|+. .+.+..+||++++++|.+.+++ ..+|||+|+-
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~----ppdILVTTPEsL~~ 112 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRN----PPDILITTPESLYL 112 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcC----CCCEEEecHHHHHH
Confidence 35899999999999888877642 3568899999999999876653 5689999972
Q ss_pred -cc-cc-CCCCCccEEEE
Q 011060 147 -AA-RG-LDIPNVDLIIH 161 (494)
Q Consensus 147 -~~-~G-idip~v~~VI~ 161 (494)
+. +. ..+.+|++||.
T Consensus 113 LLtsk~r~~L~~Vr~VIV 130 (1490)
T PRK09751 113 MLTSRARETLRGVETVII 130 (1490)
T ss_pred HHhhhhhhhhccCCEEEE
Confidence 22 22 35788998884
No 233
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=81.97 E-value=2.8 Score=43.89 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=42.9
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd 145 (494)
.+..+||..+|+..++++.+.-.+ ++.+..+-|+++.+++---+.. -+.|+|||+
T Consensus 321 ~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~----gceiviatP 380 (673)
T KOG0333|consen 321 EGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSM----GCEIVIATP 380 (673)
T ss_pred cCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhc----cceeeecCc
Confidence 356899999999999988776543 4778899999998887444433 578999998
No 234
>COG4907 Predicted membrane protein [Function unknown]
Probab=81.89 E-value=2.2 Score=43.67 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=30.6
Q ss_pred hhHHHHHhhhhcCCCcCccccEEEeecCceeeEEeecCHHHHHHHHh
Q 011060 304 ARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 350 (494)
Q Consensus 304 ~~~i~~~i~~~~~~~~~~ig~i~i~~~~~~~gs~fdvp~~~a~~~~~ 350 (494)
+.....+|++..-++....-.|.+|++.-..++-.-|.++.++++-.
T Consensus 488 W~aFKnfLsd~s~lke~~pesI~~W~~ylVYatALGV~dkVvkam~~ 534 (595)
T COG4907 488 WQAFKNFLSDYSQLKEAKPESIHLWEQYLVYATALGVSDKVVKAMRK 534 (595)
T ss_pred HHHHHHHHHhHHHHhhCCCcceehHhhhhhhhhhhccHHHHHHHHHH
Confidence 33445677777767666778899999875445555666666555443
No 235
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=80.97 E-value=3 Score=37.32 Aligned_cols=46 Identities=37% Similarity=0.636 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEe
Q 011060 5 GFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDL 50 (494)
Q Consensus 5 GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~ 50 (494)
.+.+.+..++..+++..+++++|||+++.+......++.+...+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~ 190 (201)
T smart00487 145 GFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDV 190 (201)
T ss_pred CcHHHHHHHHHhCCccceEEEEecCCchhHHHHHHHhcCCCEEEeC
Confidence 5677888899988889999999999999999999988886666554
No 236
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=80.34 E-value=14 Score=35.36 Aligned_cols=68 Identities=21% Similarity=0.281 Sum_probs=54.1
Q ss_pred eEEEEeCChHHHHHHHHHHHc------cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc------cccccCCCCCcc
Q 011060 90 KTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVD 157 (494)
Q Consensus 90 ~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd------~~~~Gidip~v~ 157 (494)
.+||.|.|++.+-++.....+ ..++.++.|+|+-+.-+++++. -..|+|+|+ +-.+-+++.+|.
T Consensus 112 svlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~PhivVgTPGrilALvr~k~l~lk~vk 187 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----CPHIVVGTPGRILALVRNRSLNLKNVK 187 (387)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----CCeEEEcCcHHHHHHHHhccCchhhcc
Confidence 689999999999998776553 2578999999998888887776 567999998 335678888888
Q ss_pred EEEE
Q 011060 158 LIIH 161 (494)
Q Consensus 158 ~VI~ 161 (494)
+-|.
T Consensus 188 hFvl 191 (387)
T KOG0329|consen 188 HFVL 191 (387)
T ss_pred eeeh
Confidence 7664
No 237
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=79.48 E-value=6 Score=44.46 Aligned_cols=70 Identities=13% Similarity=0.199 Sum_probs=51.1
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc-cccccC---------C
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-VAARGL---------D 152 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd-~~~~Gi---------d 152 (494)
+..++||.+||++.+.++...|.. .+.+..++|+.+.++|..+.+ ..+|||+|+ .+..++ .
T Consensus 80 ~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~~-----~~~IivtTPd~L~~~~L~~~~~~~~~ 154 (742)
T TIGR03817 80 PRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWARE-----HARYVLTNPDMLHRGILPSHARWARF 154 (742)
T ss_pred CCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHHhc-----CCCEEEEChHHHHHhhccchhHHHHH
Confidence 346899999999999999888874 367888999999887754432 357999996 222221 2
Q ss_pred CCCccEEEE
Q 011060 153 IPNVDLIIH 161 (494)
Q Consensus 153 ip~v~~VI~ 161 (494)
+.++.+||.
T Consensus 155 l~~l~~vVi 163 (742)
T TIGR03817 155 LRRLRYVVI 163 (742)
T ss_pred HhcCCEEEE
Confidence 567888774
No 238
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=79.16 E-value=7.3 Score=40.39 Aligned_cols=106 Identities=19% Similarity=0.346 Sum_probs=69.1
Q ss_pred eEEEEeCChHHHHHHHHHHHc------cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc-----cccc---cCCCCC
Q 011060 90 KTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR---GLDIPN 155 (494)
Q Consensus 90 ~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd-----~~~~---Gidip~ 155 (494)
-+||..||++.+.++.+.+.. .+.+..+-|+.+.++ -++.|++...+|||+|+ ++.+ .+|+-+
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~---Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rs 157 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEE---DIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRS 157 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHH---HHHHHHHhCCcEEEeCchhHHHHHhchhhhccccc
Confidence 579999999999887766552 366888889966544 46677888889999997 3333 566667
Q ss_pred ccEEEE--------eCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHH
Q 011060 156 VDLIIH--------YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 205 (494)
Q Consensus 156 v~~VI~--------~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~ 205 (494)
+.++|. +++-.+....+-+.-+--|.| |++......+..|.+.
T Consensus 158 Le~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTG-------LFSATq~~~v~dL~ra 208 (567)
T KOG0345|consen 158 LEILVLDEADRLLDMGFEASVNTILSFLPKQRRTG-------LFSATQTQEVEDLARA 208 (567)
T ss_pred cceEEecchHhHhcccHHHHHHHHHHhcccccccc-------cccchhhHHHHHHHHh
Confidence 777763 333345555555555555544 4444444444444443
No 239
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=78.97 E-value=6.8 Score=37.70 Aligned_cols=155 Identities=20% Similarity=0.281 Sum_probs=82.4
Q ss_pred cEEEEeecCChHH------HHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCc-cHHHHHHHHHHHH-ccCCeEEE
Q 011060 22 QSMLFSATMPSWV------KKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT-SKRTILSDLITVY-AKGGKTIV 93 (494)
Q Consensus 22 q~il~SAT~~~~v------~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~ll~~~-~~~~~~iV 93 (494)
.+-+++-|++... ++++++|-.. .|.|..+..... +....+..++..- .+.-++||
T Consensus 4 kIGivTgtvSq~ed~~r~Ae~l~~~Yg~~----------------~I~h~tyPdnf~~e~EttIskI~~lAdDp~mKaIV 67 (275)
T PF12683_consen 4 KIGIVTGTVSQSEDEYRGAEELIKKYGDV----------------MIKHVTYPDNFMSEQETTISKIVSLADDPDMKAIV 67 (275)
T ss_dssp EEEEEE--TTT-HHHHHHHHHHHHHHHHH----------------EEEEEE--TTGGGCHHHHHHHHHGGGG-TTEEEEE
T ss_pred EEEEEeCCcccChHHHHHHHHHHHHhCcc----------------eEEEEeCCCcccchHHHHHHHHHHhccCCCccEEE
Confidence 4667888886543 3355555432 234444444432 3444555555432 34569999
Q ss_pred EeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCC------CccEEEEeCCCC
Q 011060 94 FTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP------NVDLIIHYELPN 166 (494)
Q Consensus 94 F~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip------~v~~VI~~~~P~ 166 (494)
|+....-+-...+.+++ .-.+..+-+.+ +++ -.++.. ..+|.+.+|...+|..|+ .....|||.+|.
T Consensus 68 v~q~vpGt~~af~kIkekRpDIl~ia~~~-~ED-p~~i~~----~aDi~~~~D~~~~G~~i~~~Ak~mGAktFVh~sfpr 141 (275)
T PF12683_consen 68 VSQAVPGTAEAFRKIKEKRPDILLIAGEP-HED-PEVISS----AADIVVNPDEISRGYTIVWAAKKMGAKTFVHYSFPR 141 (275)
T ss_dssp EE-SS---HHHHHHHHHH-TTSEEEESS---S--HHHHHH----HSSEEEE--HHHHHHHHHHHHHHTT-S-EEEEEETT
T ss_pred EeCCCcchHHHHHHHHhcCCCeEEEcCCC-cCC-HHHHhh----ccCeEeccchhhccHHHHHHHHHcCCceEEEEechh
Confidence 99988877777777764 44555565553 222 233333 457888899999998875 345788888888
Q ss_pred CHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccCCCC
Q 011060 167 DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV 217 (494)
Q Consensus 167 ~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~ 217 (494)
+.. |....=| +..++.-.+.++++|..+..|.
T Consensus 142 hms-~~~l~~R------------------r~~M~~~C~~lGi~fv~~taPD 173 (275)
T PF12683_consen 142 HMS-YELLARR------------------RDIMEEACKDLGIKFVEVTAPD 173 (275)
T ss_dssp GGG-SHHHHHH------------------HHHHHHHHHHCT--EEEEEE--
T ss_pred hcc-hHHHHHH------------------HHHHHHHHHHcCCeEEEEeCCC
Confidence 665 4333322 3567777888899988865554
No 240
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=76.14 E-value=0.85 Score=48.66 Aligned_cols=18 Identities=17% Similarity=0.028 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhcCCcccc
Q 011060 196 RRTVRSLERDVGCKFEFV 213 (494)
Q Consensus 196 ~~~~~~l~~~~~~~~~~~ 213 (494)
..++..+.+.+-..+..+
T Consensus 263 skfv~y~~~kvlP~l~~l 280 (556)
T PF05918_consen 263 SKFVNYMCEKVLPKLSDL 280 (556)
T ss_dssp HHHHHHHHHHTCCCTT--
T ss_pred HHHHHHHHHHhcCChhhC
Confidence 355666666554444444
No 241
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=75.94 E-value=7.3 Score=40.70 Aligned_cols=73 Identities=18% Similarity=0.219 Sum_probs=52.3
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHH-HHHHHHhhccCCcEEEEEeccc-------ccccCCCCC
Q 011060 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQH-QRERTLNGFRQGKFTVLVATDV-------AARGLDIPN 155 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~-~R~~~~~~F~~g~~~iLVaTd~-------~~~Gidip~ 155 (494)
-++||.++|+..+.+++..+.. ++.|..+.|.-+-+ +..+....-....++|||||+- ...++|+..
T Consensus 216 LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~ 295 (620)
T KOG0350|consen 216 LRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKH 295 (620)
T ss_pred eEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhh
Confidence 4899999999999999998874 45677776654433 3344444555567899999982 356778877
Q ss_pred ccEEEE
Q 011060 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+.+.|.
T Consensus 296 LrfLVI 301 (620)
T KOG0350|consen 296 LRFLVI 301 (620)
T ss_pred ceEEEe
Confidence 776553
No 242
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=74.63 E-value=9.3 Score=41.05 Aligned_cols=70 Identities=16% Similarity=0.200 Sum_probs=47.0
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc-----cc-cccCCCCCc
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VA-ARGLDIPNV 156 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd-----~~-~~Gidip~v 156 (494)
..++||.+||++.|.++++.+.. .+.+..+.|+.+..++... ++. ..+|||+|+ .+ ...+++.++
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~---l~~-~~~IiV~TPgrL~~~l~~~~~~l~~v 271 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYR---IQQ-GVELIVGTPGRLIDLLSKHDIELDNV 271 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHH---hcC-CCCEEEECHHHHHHHHHcCCccchhe
Confidence 35799999999999887776653 2456666666554443322 233 468999995 33 336778888
Q ss_pred cEEEE
Q 011060 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
.+||.
T Consensus 272 ~~lVi 276 (518)
T PLN00206 272 SVLVL 276 (518)
T ss_pred eEEEe
Confidence 88774
No 243
>PRK13767 ATP-dependent helicase; Provisional
Probab=73.91 E-value=9.4 Score=43.82 Aligned_cols=69 Identities=14% Similarity=0.177 Sum_probs=49.2
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----------------cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccc----
Q 011060 89 GKTIVFTQTKRDADEVSLALTS-----------------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA---- 147 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----------------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~---- 147 (494)
.++|+.+|+++.+.+++..|.. .+.+...||+.++.++.+.++. ..+|||+|+--
T Consensus 85 ~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~----~p~IlVtTPE~L~~l 160 (876)
T PRK13767 85 VYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKK----PPHILITTPESLAIL 160 (876)
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhC----CCCEEEecHHHHHHH
Confidence 4699999999999887664331 3467889999999998877654 56899999721
Q ss_pred -cc-c--CCCCCccEEEE
Q 011060 148 -AR-G--LDIPNVDLIIH 161 (494)
Q Consensus 148 -~~-G--idip~v~~VI~ 161 (494)
.. . -.+.++.+||.
T Consensus 161 l~~~~~~~~l~~l~~VVI 178 (876)
T PRK13767 161 LNSPKFREKLRTVKWVIV 178 (876)
T ss_pred hcChhHHHHHhcCCEEEE
Confidence 11 1 13567888774
No 244
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=72.70 E-value=17 Score=40.48 Aligned_cols=61 Identities=11% Similarity=0.090 Sum_probs=48.2
Q ss_pred HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc
Q 011060 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 79 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~ 146 (494)
..++..+ .+.+++|.++|...|.+.++.+.. ++.+..+.++++.++|...+. .+|+++|+.
T Consensus 89 pa~l~aL-~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y~------~dIvyGT~~ 154 (745)
T TIGR00963 89 PAYLNAL-TGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYA------CDITYGTNN 154 (745)
T ss_pred HHHHHHH-hCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhcC------CCEEEECCC
Confidence 3334444 456899999999999999888764 477899999999988776663 589999986
No 245
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=72.03 E-value=13 Score=41.12 Aligned_cols=68 Identities=15% Similarity=0.184 Sum_probs=48.9
Q ss_pred HHHHHHccCCeEEEEeCChHHHHHHHHHHH--ccCcEEEEeCCCCHHHHHHHHhhccCC--cEEEEEecccccc
Q 011060 80 DLITVYAKGGKTIVFTQTKRDADEVSLALT--SIIASEALHGDISQHQRERTLNGFRQG--KFTVLVATDVAAR 149 (494)
Q Consensus 80 ~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~--~~~~~~~lhg~~~~~~R~~~~~~F~~g--~~~iLVaTd~~~~ 149 (494)
.+|.....+++-||.||+.-.-..+.++-+ -.+.|..|||. |.+|.++-..+..+ .++|||+|=-++.
T Consensus 440 ayLkq~g~~gpHLVVvPsSTleNWlrEf~kwCPsl~Ve~YyGS--q~ER~~lR~~i~~~~~~ydVllTTY~la~ 511 (941)
T KOG0389|consen 440 AYLKQIGNPGPHLVVVPSSTLENWLREFAKWCPSLKVEPYYGS--QDERRELRERIKKNKDDYDVLLTTYNLAA 511 (941)
T ss_pred HHHHHcCCCCCcEEEecchhHHHHHHHHHHhCCceEEEeccCc--HHHHHHHHHHHhccCCCccEEEEEeeccc
Confidence 344445567899999998654444443322 24789999998 79999999888776 7899999965544
No 246
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=71.60 E-value=12 Score=28.17 Aligned_cols=59 Identities=20% Similarity=0.162 Sum_probs=40.4
Q ss_pred EEEEeCChHHHHHHHHHHHccCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccccccc
Q 011060 91 TIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 150 (494)
Q Consensus 91 ~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~G 150 (494)
.|+.|....++..+.+.......+..+.|.....+....++++... ..|+|++|--..|
T Consensus 2 ~l~ivEg~~da~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~-~~Iii~~D~D~~G 60 (76)
T smart00493 2 VLIIVEGPADAIALEKAGGFGGNVVALGGHLLKKEIIKLLKRLAKK-KEVILATDPDREG 60 (76)
T ss_pred EEEEEcCHHHHHHHHHhcCCCEEEEEEeeeecHHHHHHHHHHHhcC-CEEEEEcCCChhH
Confidence 5888999999988888775445666666665555555666665443 5799998854333
No 247
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=68.27 E-value=81 Score=31.94 Aligned_cols=58 Identities=16% Similarity=0.086 Sum_probs=30.3
Q ss_pred eEEEeecCcccccCCCChhHHHHHhhhhcCCCcCccccEEEeecC----ceeeEEeecC-HHHHHHHHhhcC
Q 011060 287 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADD----RVQGAVFDLP-EEIAKELLNKQI 353 (494)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~i~~~~----~~~gs~fdvp-~~~a~~~~~~~~ 353 (494)
++|+|..- ...++..+|..++..... |-.+.|..+. ....+||+-. .+.|++.++.+.
T Consensus 194 ~~lfV~nL----p~~vtee~L~~~F~~fG~-----V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln 256 (346)
T TIGR01659 194 TNLYVTNL----PRTITDDQLDTIFGKYGQ-----IVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALN 256 (346)
T ss_pred ceeEEeCC----CCcccHHHHHHHHHhcCC-----EEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 45666432 235788888888876554 3345554331 0122555553 345555555433
No 248
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=67.65 E-value=30 Score=29.90 Aligned_cols=79 Identities=19% Similarity=0.223 Sum_probs=40.2
Q ss_pred HHHHHHHHHH-HccCCeEEEEeCChHHHHHHHHHHHcc-CcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCC
Q 011060 75 RTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLD 152 (494)
Q Consensus 75 ~~~l~~ll~~-~~~~~~~iVF~~t~~~~~~l~~~l~~~-~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gid 152 (494)
...+..|++. +..+.+++|+|++.+.++.|-+.|-.. -....-|+-.... ......|+|+++... ..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~i~~~~~~--~~ 83 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEP---------PAARQPVLITWDQEA--NP 83 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-S---------STT--SEEEE-TTS-----
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCC---------CCCCCeEEEecCccc--CC
Confidence 4666666644 466789999999999999999998642 1122223321111 111357999997643 22
Q ss_pred CCCccEEEEeCC
Q 011060 153 IPNVDLIIHYEL 164 (494)
Q Consensus 153 ip~v~~VI~~~~ 164 (494)
.+..+++||.+.
T Consensus 84 ~~~~~vLinL~~ 95 (137)
T PF04364_consen 84 NNHADVLINLSG 95 (137)
T ss_dssp -S--SEEEE--S
T ss_pred CCCCCEEEECCC
Confidence 333688999764
No 249
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=67.60 E-value=32 Score=32.98 Aligned_cols=41 Identities=17% Similarity=0.288 Sum_probs=34.7
Q ss_pred CccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcc
Q 011060 71 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI 111 (494)
Q Consensus 71 ~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~ 111 (494)
-.+..++|.++.+.+.++..+++|++|.++++++.+.|++.
T Consensus 171 mp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~ 211 (256)
T COG2519 171 LPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRER 211 (256)
T ss_pred CCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc
Confidence 34566778888888888899999999999999999999863
No 250
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=66.81 E-value=9 Score=38.35 Aligned_cols=53 Identities=19% Similarity=0.175 Sum_probs=43.3
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc
Q 011060 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd 145 (494)
.-++||+||++.+-++++.|.- .+++..+.|+++.-.+...+.+ .-.++|||+
T Consensus 76 iFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~----rPHvVvatP 133 (442)
T KOG0340|consen 76 IFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSD----RPHVVVATP 133 (442)
T ss_pred ceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhccc----CCCeEecCc
Confidence 3689999999999999998862 5789999999877766666554 667999997
No 251
>KOG4284 consensus DEAD box protein [Transcription]
Probab=66.28 E-value=22 Score=38.64 Aligned_cols=83 Identities=13% Similarity=0.164 Sum_probs=54.7
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc------cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc------cccccCCCCC
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPN 155 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd------~~~~Gidip~ 155 (494)
..+.+|.++|++-+-++.+.+.. ++.|.++-|+.+-..-..- -.+.+|+|.|+ +--+-+|+..
T Consensus 93 ~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~r-----lk~~rIvIGtPGRi~qL~el~~~n~s~ 167 (980)
T KOG4284|consen 93 HIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIR-----LKQTRIVIGTPGRIAQLVELGAMNMSH 167 (980)
T ss_pred cceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhh-----hhhceEEecCchHHHHHHHhcCCCccc
Confidence 35789999999999888877653 4778889998765543333 33677999998 2234467777
Q ss_pred ccEEEE--eCCCCCHhHHHHHh
Q 011060 156 VDLIIH--YELPNDPETFVHRS 175 (494)
Q Consensus 156 v~~VI~--~~~P~~~~~y~qr~ 175 (494)
|++.|. .|--.+..+|.|-+
T Consensus 168 vrlfVLDEADkL~~t~sfq~~I 189 (980)
T KOG4284|consen 168 VRLFVLDEADKLMDTESFQDDI 189 (980)
T ss_pred eeEEEeccHHhhhchhhHHHHH
Confidence 887664 22222344554444
No 252
>PTZ00424 helicase 45; Provisional
Probab=66.04 E-value=38 Score=34.76 Aligned_cols=70 Identities=16% Similarity=0.249 Sum_probs=47.3
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccc------cccCCCCCc
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPNV 156 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~------~~Gidip~v 156 (494)
..++||+++|++.+.++.+.+.. ...+..+.|+....+.. +.+.+ ..+|+|+|+-. ...+.+.++
T Consensus 96 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~-~~~Ivv~Tp~~l~~~l~~~~~~l~~i 171 (401)
T PTZ00424 96 ACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDI---NKLKA-GVHMVVGTPGRVYDMIDKRHLRVDDL 171 (401)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHH---HHHcC-CCCEEEECcHHHHHHHHhCCcccccc
Confidence 45899999999999998877663 24466677877654432 33333 35799999732 234567788
Q ss_pred cEEEE
Q 011060 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
++||.
T Consensus 172 ~lvVi 176 (401)
T PTZ00424 172 KLFIL 176 (401)
T ss_pred cEEEE
Confidence 88774
No 253
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=66.03 E-value=33 Score=28.20 Aligned_cols=70 Identities=29% Similarity=0.308 Sum_probs=45.5
Q ss_pred cHHHHHHHHHHHHc---cCCeEEEEeCChHHHHHHHHHHHcc----CcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc
Q 011060 73 SKRTILSDLITVYA---KGGKTIVFTQTKRDADEVSLALTSI----IASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 73 ~k~~~l~~ll~~~~---~~~~~iVF~~t~~~~~~l~~~l~~~----~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd 145 (494)
-|...+..++.... ...++||+|+++..++++.+.+... ..+..+|+.....++... ......|+++|.
T Consensus 12 GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~i~t~ 87 (144)
T cd00046 12 GKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKL----LSGKTDIVVGTP 87 (144)
T ss_pred chhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHH----hcCCCCEEEECc
Confidence 45444444433332 4579999999999999988887742 557788887655554411 123567788886
Q ss_pred c
Q 011060 146 V 146 (494)
Q Consensus 146 ~ 146 (494)
-
T Consensus 88 ~ 88 (144)
T cd00046 88 G 88 (144)
T ss_pred H
Confidence 5
No 254
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=65.95 E-value=68 Score=31.73 Aligned_cols=122 Identities=16% Similarity=0.200 Sum_probs=58.9
Q ss_pred ccHHHHHHHHHHHH-----cc-CCeEEEEeCChHHHHHHHHHHH-ccCcEEEEeCCCCHHHHHHHHh------------h
Q 011060 72 TSKRTILSDLITVY-----AK-GGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLN------------G 132 (494)
Q Consensus 72 ~~k~~~l~~ll~~~-----~~-~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~------------~ 132 (494)
..|+..|.+|++.+ .. +.++||.++..++.+.|..+|. +.+....+.|.....+....-+ .
T Consensus 95 S~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~ 174 (297)
T PF11496_consen 95 SGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSK 174 (297)
T ss_dssp -HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S---------------
T ss_pred CchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcccccccccccccc
Confidence 46889999999877 22 3589999999999998888877 4677777777655444333220 0
Q ss_pred c---cCCcEEE-EEeccccccc----CCCCCccEEEEeCCCCCHh-HHHHHhhccCcCCCCceEEEecCh
Q 011060 133 F---RQGKFTV-LVATDVAARG----LDIPNVDLIIHYELPNDPE-TFVHRSGRTGRAGKEGTAILMFTS 193 (494)
Q Consensus 133 F---~~g~~~i-LVaTd~~~~G----idip~v~~VI~~~~P~~~~-~y~qr~GR~gR~g~~g~~i~l~~~ 193 (494)
. ..-...| |+.|+-+... ++-..+++||-+|.-.++. ..+|++=...|..+.--+|.++..
T Consensus 175 ~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~~~~PiirLv~~ 244 (297)
T PF11496_consen 175 KKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRNRLCPIIRLVPS 244 (297)
T ss_dssp -------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH-------S--EEEEEET
T ss_pred cccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCCCCCcEEEEeeC
Confidence 0 0123444 4455544432 2334778999999765433 345554333332233334444443
No 255
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=65.55 E-value=25 Score=38.68 Aligned_cols=54 Identities=15% Similarity=0.075 Sum_probs=43.8
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~ 146 (494)
.+..++|.++|+..|.+.++.+.. ++.+..+.|++++++|.... ..+|+++|+.
T Consensus 143 ~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~y------~~dIvygT~~ 201 (656)
T PRK12898 143 AGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAY------GADITYCTNK 201 (656)
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHHc------CCCEEEECCC
Confidence 567999999999999988888774 47888999999987776654 3579999873
No 256
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=65.10 E-value=17 Score=28.40 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=31.7
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCC
Q 011060 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 122 (494)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~ 122 (494)
.+..+.++.++++||.+-..+...+..|+. ++.+..|.|++.
T Consensus 44 ~~~~~~~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 44 RLNELPKDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred HHHhcCCCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 333445667899999987778888888875 568888999874
No 257
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=64.26 E-value=26 Score=39.80 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=48.2
Q ss_pred HHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc
Q 011060 78 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 78 l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~ 146 (494)
|..++..+ .+..++|.++|+..|.+.++.+.. ++.+.+++++++..+|...+ ..+|+++|+-
T Consensus 114 Lpa~~~al-~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y------~~dIvygT~g 180 (896)
T PRK13104 114 LPAYLNAI-SGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY------KADIVYGTNN 180 (896)
T ss_pred HHHHHHHh-cCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh------CCCEEEECCh
Confidence 33344443 456899999999999999888874 46788999999999887666 3689999984
No 258
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=64.09 E-value=17 Score=37.29 Aligned_cols=70 Identities=17% Similarity=0.224 Sum_probs=46.8
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc------cccccCCCCCc
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNV 156 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd------~~~~Gidip~v 156 (494)
+-+++|..+|++.+.+.-+.++. .+.+..+.|+-+.+++-..+. ..-+|++||+ .++.-+++..|
T Consensus 90 g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~----~npDii~ATpgr~~h~~vem~l~l~sv 165 (529)
T KOG0337|consen 90 GLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLN----ENPDIIIATPGRLLHLGVEMTLTLSSV 165 (529)
T ss_pred ccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhc----cCCCEEEecCceeeeeehheeccccce
Confidence 45999999999998887777663 244554444434444333332 3567999998 35556788889
Q ss_pred cEEEE
Q 011060 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
.+||.
T Consensus 166 eyVVf 170 (529)
T KOG0337|consen 166 EYVVF 170 (529)
T ss_pred eeeee
Confidence 98884
No 259
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=64.06 E-value=1.6e+02 Score=32.08 Aligned_cols=54 Identities=15% Similarity=0.168 Sum_probs=30.6
Q ss_pred eEEEeecCcccccCCCChhHHHHHhhhhcCCCcCccccEEEeecCceeeEEeecC-HHHHHHHHhh
Q 011060 287 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLP-EEIAKELLNK 351 (494)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~i~~~~~~~gs~fdvp-~~~a~~~~~~ 351 (494)
.+|+|..- ...++..+|..++....+ .+|-+|.+..++ +||+-. .+.|++.++.
T Consensus 234 k~LfVgNL----~~~~tee~L~~~F~~f~~---G~I~rV~~~rgf----AFVeF~s~e~A~kAi~~ 288 (578)
T TIGR01648 234 KILYVRNL----MTTTTEEIIEKSFSEFKP---GKVERVKKIRDY----AFVHFEDREDAVKAMDE 288 (578)
T ss_pred cEEEEeCC----CCCCCHHHHHHHHHhcCC---CceEEEEeecCe----EEEEeCCHHHHHHHHHH
Confidence 45666532 235788888888876511 235566666665 455553 3444444443
No 260
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=63.60 E-value=12 Score=43.40 Aligned_cols=95 Identities=21% Similarity=0.290 Sum_probs=68.8
Q ss_pred cCCeEEEEeCChHHHHHHHHHHH-ccCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEEeCCC
Q 011060 87 KGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP 165 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~~~~P 165 (494)
...++|||+.-....+.+...+. +.+... +-++ -+.-...+..|++ --.+|+=+...+-|+|+-+..||+..++-
T Consensus 1220 ~qekvIvfsqws~~ldV~e~~~~~N~I~~~-~~~~--t~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~ePi 1295 (1394)
T KOG0298|consen 1220 EQEKVIVFSQWSVVLDVKELRYLMNLIKKQ-LDGE--TEDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLVEPI 1295 (1394)
T ss_pred cCceEEEEEehHHHHHHHHHHHHhhhhHhh-hccC--Ccchhhhhhhccc-ceEEEEEeccCcccccHHhhhhhheeccc
Confidence 34689999987766666655554 233222 1121 2344556777776 33456778888999999999999999999
Q ss_pred CCHhHHHHHhhccCcCCCCc
Q 011060 166 NDPETFVHRSGRTGRAGKEG 185 (494)
Q Consensus 166 ~~~~~y~qr~GR~gR~g~~g 185 (494)
.++..-.|.+||..|.|++-
T Consensus 1296 LN~~~E~QAigRvhRiGQ~~ 1315 (1394)
T KOG0298|consen 1296 LNPGDEAQAIGRVHRIGQKR 1315 (1394)
T ss_pred cCchHHHhhhhhhhhccccc
Confidence 99999999999999998653
No 261
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=63.19 E-value=22 Score=38.49 Aligned_cols=58 Identities=21% Similarity=0.309 Sum_probs=50.0
Q ss_pred CCeEEEEeCChHHHHHHHHHHH-ccCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc
Q 011060 88 GGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd 145 (494)
.+-+||..|-....+.=...|. .++.+..+++.++.++|..++..+..|.+++|.-++
T Consensus 57 ~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisP 115 (590)
T COG0514 57 EGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISP 115 (590)
T ss_pred CCCEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHhcCceeEEEECc
Confidence 5799999999887765444544 689999999999999999999999999999987766
No 262
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.44 E-value=10 Score=39.36 Aligned_cols=22 Identities=23% Similarity=0.566 Sum_probs=19.1
Q ss_pred CCCCCccccCCCCccccCCCCC
Q 011060 473 RSFGGACFNCGKSGHRASECPN 494 (494)
Q Consensus 473 ~~~~~~c~~c~~~gh~~~~cp~ 494 (494)
.-.+..|++|++.|||...||.
T Consensus 155 Pppsy~c~rc~~~g~wikacpt 176 (448)
T KOG0314|consen 155 PPPSYKCVKCPTPGPWIKACPT 176 (448)
T ss_pred CCCCcceecCCCCCccceeccc
Confidence 4567789999999999999984
No 263
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=62.10 E-value=17 Score=37.45 Aligned_cols=73 Identities=21% Similarity=0.248 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHc-----cCCeEEEEeCChHHHHHHHHHHHc-------cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEE
Q 011060 75 RTILSDLITVYA-----KGGKTIVFTQTKRDADEVSLALTS-------IIASEALHGDISQHQRERTLNGFRQGKFTVLV 142 (494)
Q Consensus 75 ~~~l~~ll~~~~-----~~~~~iVF~~t~~~~~~l~~~l~~-------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLV 142 (494)
+.+|..|+..-. ....++|.+||++.|.+++..+.+ .+.+.-+.++|+......++.. ...|+|
T Consensus 75 iPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d----~pdIvV 150 (569)
T KOG0346|consen 75 IPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMD----LPDIVV 150 (569)
T ss_pred HHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHcc----CCCeEE
Confidence 345555554321 234789999999999998887764 3567777888888776655544 678999
Q ss_pred eccc-----ccccC
Q 011060 143 ATDV-----AARGL 151 (494)
Q Consensus 143 aTd~-----~~~Gi 151 (494)
+|+. ++.|+
T Consensus 151 ~TP~~ll~~~~~~~ 164 (569)
T KOG0346|consen 151 ATPAKLLRHLAAGV 164 (569)
T ss_pred eChHHHHHHHhhcc
Confidence 9983 45555
No 264
>PRK00254 ski2-like helicase; Provisional
Probab=61.21 E-value=22 Score=39.87 Aligned_cols=68 Identities=24% Similarity=0.360 Sum_probs=48.7
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc-----cccc-cCCCCCc
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPNV 156 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd-----~~~~-Gidip~v 156 (494)
.+.++|+.+|+++.+.+.++.+.. ++.+..++|+.+...+ .+ +..+|+|+|+ .+.. ...+.++
T Consensus 67 ~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~--~~-----~~~~IiV~Tpe~~~~ll~~~~~~l~~l 139 (720)
T PRK00254 67 EGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDE--WL-----GKYDIIIATAEKFDSLLRHGSSWIKDV 139 (720)
T ss_pred cCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchh--hh-----ccCCEEEEcHHHHHHHHhCCchhhhcC
Confidence 467999999999999999887763 5788899999875432 11 3568999995 2221 1345678
Q ss_pred cEEEE
Q 011060 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
.+||.
T Consensus 140 ~lvVi 144 (720)
T PRK00254 140 KLVVA 144 (720)
T ss_pred CEEEE
Confidence 88774
No 265
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=60.65 E-value=28 Score=36.47 Aligned_cols=105 Identities=18% Similarity=0.254 Sum_probs=59.9
Q ss_pred CeEEEEeCChHHHHHHHHHHHc------cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCC----------
Q 011060 89 GKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLD---------- 152 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gid---------- 152 (494)
-.+||.|+|++.+-+++..++. .+.+..+-|+... ..-.++... .++|||||+= |=+|
T Consensus 155 ~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~---~~e~~kl~k-~~niliATPG--RLlDHlqNt~~f~~ 228 (543)
T KOG0342|consen 155 TGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNF---SVEADKLVK-GCNILIATPG--RLLDHLQNTSGFLF 228 (543)
T ss_pred eeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccc---hHHHHHhhc-cccEEEeCCc--hHHhHhhcCCcchh
Confidence 4789999999998887766553 2455556566432 223334444 7899999981 2121
Q ss_pred -------CCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHh
Q 011060 153 -------IPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (494)
Q Consensus 153 -------ip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~ 206 (494)
+...+.+...+++.+....+--..+. .-.++++......++.+.+-.
T Consensus 229 r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~-------rqt~LFSAT~~~kV~~l~~~~ 282 (543)
T KOG0342|consen 229 RNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQ-------RQTLLFSATQPSKVKDLARGA 282 (543)
T ss_pred hccceeEeecchhhhhcccHHHHHHHHHhcccc-------ceeeEeeCCCcHHHHHHHHHh
Confidence 12223333455666666666555532 234455555555566665544
No 266
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=60.53 E-value=75 Score=35.26 Aligned_cols=107 Identities=18% Similarity=0.214 Sum_probs=73.1
Q ss_pred cCCccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHccC---cEEEE--------------------e-----CC
Q 011060 69 TTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII---ASEAL--------------------H-----GD 120 (494)
Q Consensus 69 ~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~---~~~~l--------------------h-----g~ 120 (494)
+....|.-++..+++.. +.++||.++++..|.+|+..|+..+ .|..+ + ..
T Consensus 37 vtgs~kt~~~a~~~~~~--~~p~Lvi~~n~~~A~ql~~el~~f~p~~~V~~f~sy~d~y~pe~y~P~~d~~~~k~~~~~~ 114 (655)
T TIGR00631 37 VTGSGKTFTMANVIAQV--NRPTLVIAHNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTYIEKDASIND 114 (655)
T ss_pred CCCcHHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeeecccCCccccCCCccccccccCCCCh
Confidence 44557777777777654 4689999999999999999997643 13333 1 11
Q ss_pred CCHHHHHHHHhhccCCcEEEEEecccccccCCCCC----ccEEEEeCCCCCHhHHHHHhhc
Q 011060 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN----VDLIIHYELPNDPETFVHRSGR 177 (494)
Q Consensus 121 ~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~----v~~VI~~~~P~~~~~y~qr~GR 177 (494)
--...|..++.++..+.-.|+|||-.+-.++--|+ ..+.+..+-..+.+.++.+.-.
T Consensus 115 ~i~~~R~~al~~L~~~~~~ivVasv~~i~~l~~p~~~~~~~~~l~~G~~i~~~~l~~~Lv~ 175 (655)
T TIGR00631 115 EIERLRHSATRSLLERRDVIVVASVSCIYGLGSPEEYLKMVLHLEVGKEIDRRELLRRLVE 175 (655)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEcHHHhcCCCCHHHHHhccEEEeCCCCcCHHHHHHHHHH
Confidence 12346788888887776678888866667765553 3456666666777777666544
No 267
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=60.32 E-value=14 Score=37.84 Aligned_cols=81 Identities=19% Similarity=0.242 Sum_probs=57.2
Q ss_pred EEEEcCCccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCC--cEEEE
Q 011060 65 YAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG--KFTVL 141 (494)
Q Consensus 65 ~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g--~~~iL 141 (494)
.|+..+...-..+...|-..+ ..+-+|||.+-...+..-.+.|.+ .+++..|.+.|+..+|.+++-++..- .+++|
T Consensus 39 VyVsMPTGaGKSLCyQLPaL~-~~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~L 117 (641)
T KOG0352|consen 39 VYVSMPTGAGKSLCYQLPALV-HGGITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKML 117 (641)
T ss_pred EEEeccCCCchhhhhhchHHH-hCCeEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEE
Confidence 445554433333333333333 346899999999888776666664 78899999999999999999998754 47788
Q ss_pred Eeccc
Q 011060 142 VATDV 146 (494)
Q Consensus 142 VaTd~ 146 (494)
--|+-
T Consensus 118 YITPE 122 (641)
T KOG0352|consen 118 YITPE 122 (641)
T ss_pred EEchh
Confidence 77763
No 268
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=59.80 E-value=15 Score=29.34 Aligned_cols=42 Identities=12% Similarity=0.153 Sum_probs=32.0
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCC
Q 011060 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 122 (494)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~ 122 (494)
.+..+.++.+++|+|.+-..+...+..|.. ++.+..|.|++.
T Consensus 54 ~~~~~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 54 ILDQLPDDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred HHhhCCCCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHH
Confidence 344445678999999987777888888875 777888888863
No 269
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=57.78 E-value=74 Score=27.97 Aligned_cols=86 Identities=26% Similarity=0.400 Sum_probs=49.6
Q ss_pred ccHHH-HHHHHHHHHcc--CCeEEEEeCChHHHHHHHHHHHcc------CcEEEEeCCCCHHHHHHHHhhccCCcEEEEE
Q 011060 72 TSKRT-ILSDLITVYAK--GGKTIVFTQTKRDADEVSLALTSI------IASEALHGDISQHQRERTLNGFRQGKFTVLV 142 (494)
Q Consensus 72 ~~k~~-~l~~ll~~~~~--~~~~iVF~~t~~~~~~l~~~l~~~------~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLV 142 (494)
.-|.. ++..++..+.. ..++||.+++...+.++...+... .....+++... ...++.+.++...+++
T Consensus 35 sGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~ 110 (201)
T smart00487 35 SGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSK----REQLRKLESGKTDILV 110 (201)
T ss_pred CchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcch----HHHHHHHhcCCCCEEE
Confidence 34655 33333443333 368999999999999888777642 23444555433 2334445555558999
Q ss_pred ec-----cccccc-CCCCCccEEEE
Q 011060 143 AT-----DVAARG-LDIPNVDLIIH 161 (494)
Q Consensus 143 aT-----d~~~~G-idip~v~~VI~ 161 (494)
+| +..... ++...+.++|.
T Consensus 111 ~t~~~l~~~~~~~~~~~~~~~~iIi 135 (201)
T smart00487 111 TTPGRLLDLLENDLLELSNVDLVIL 135 (201)
T ss_pred eChHHHHHHHHcCCcCHhHCCEEEE
Confidence 98 333332 35555665553
No 270
>PRK02362 ski2-like helicase; Provisional
Probab=57.19 E-value=20 Score=40.38 Aligned_cols=75 Identities=17% Similarity=0.266 Sum_probs=51.6
Q ss_pred HHHHHHccCCeEEEEeCChHHHHHHHHHHHc----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc-----ccccc
Q 011060 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG 150 (494)
Q Consensus 80 ~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd-----~~~~G 150 (494)
.+++.+.++.++|+.+|+++.|.+.++.+++ ++.+..++|++..... .+ +..+|+|||+ ++..+
T Consensus 59 ail~~l~~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~-----~l--~~~~IiV~Tpek~~~llr~~ 131 (737)
T PRK02362 59 AMLKAIARGGKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE-----WL--GDNDIIVATSEKVDSLLRNG 131 (737)
T ss_pred HHHHHHhcCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc-----cc--CCCCEEEECHHHHHHHHhcC
Confidence 3444444678999999999999999988874 4678889998765431 11 3467999995 22222
Q ss_pred -CCCCCccEEEE
Q 011060 151 -LDIPNVDLIIH 161 (494)
Q Consensus 151 -idip~v~~VI~ 161 (494)
..+.++.+||.
T Consensus 132 ~~~l~~v~lvVi 143 (737)
T PRK02362 132 APWLDDITCVVV 143 (737)
T ss_pred hhhhhhcCEEEE
Confidence 23567888774
No 271
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=56.75 E-value=16 Score=38.67 Aligned_cols=68 Identities=10% Similarity=0.268 Sum_probs=44.7
Q ss_pred CeEEEEeCChHHHHHHHHHHHcc-------CcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc-------ccccCCCC
Q 011060 89 GKTIVFTQTKRDADEVSLALTSI-------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-------AARGLDIP 154 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~~-------~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~-------~~~Gidip 154 (494)
.-+||.++|++.|.++++.+++. +++..+-|.--..++. ++|. .++|||+|+- -...|++.
T Consensus 212 ~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKA----RLRK-GiNILIgTPGRLvDHLknT~~i~~s 286 (708)
T KOG0348|consen 212 PYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKA----RLRK-GINILIGTPGRLVDHLKNTKSIKFS 286 (708)
T ss_pred ceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHH----HHhc-CceEEEcCchHHHHHHhccchheee
Confidence 46899999999999999888752 2233344443333333 3444 4799999981 23456777
Q ss_pred CccEEEE
Q 011060 155 NVDLIIH 161 (494)
Q Consensus 155 ~v~~VI~ 161 (494)
.+.+||.
T Consensus 287 ~LRwlVl 293 (708)
T KOG0348|consen 287 RLRWLVL 293 (708)
T ss_pred eeeEEEe
Confidence 7777773
No 272
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=56.29 E-value=37 Score=29.56 Aligned_cols=82 Identities=20% Similarity=0.199 Sum_probs=51.5
Q ss_pred CCccHHHHHHHHHHH-HccCCeEEEEeCChHHHHHHHHHHHcc-CcEEEEeCCCCHHHHHHHHhhccCCcEEEEEe-ccc
Q 011060 70 TATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA-TDV 146 (494)
Q Consensus 70 ~~~~k~~~l~~ll~~-~~~~~~~iVF~~t~~~~~~l~~~l~~~-~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVa-Td~ 146 (494)
....+...+..|+.. +..+.+++|+|++.+.++.|-+.|=.. -...+=|+-.... . .....|+|+ ++.
T Consensus 10 ~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~--------~-~~~~PV~l~~~~~ 80 (142)
T PRK05728 10 TLSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEG--------P-AAGQPVLLTWPGK 80 (142)
T ss_pred CchhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCC--------C-CCCCCEEEEcCCC
Confidence 445677778887754 466889999999999999999988642 1222234421111 0 124578887 332
Q ss_pred ccccCCCCCccEEEEeCC
Q 011060 147 AARGLDIPNVDLIIHYEL 164 (494)
Q Consensus 147 ~~~Gidip~v~~VI~~~~ 164 (494)
.+.+..+++||.+.
T Consensus 81 ----~~~~~~~~LinL~~ 94 (142)
T PRK05728 81 ----RNANHRDLLINLDG 94 (142)
T ss_pred ----CCCCCCcEEEECCC
Confidence 23455677888764
No 273
>COG4907 Predicted membrane protein [Function unknown]
Probab=56.20 E-value=9.4 Score=39.26 Aligned_cols=14 Identities=21% Similarity=0.423 Sum_probs=10.3
Q ss_pred CCCcEEEEeecCCh
Q 011060 19 PKRQSMLFSATMPS 32 (494)
Q Consensus 19 ~~~q~il~SAT~~~ 32 (494)
++..+..++-|+|.
T Consensus 116 ~e~~tf~~vy~~~~ 129 (595)
T COG4907 116 NEVRTFKFVYTLPE 129 (595)
T ss_pred ccceEEEeeeeccc
Confidence 35677788888875
No 274
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=56.08 E-value=45 Score=38.17 Aligned_cols=53 Identities=15% Similarity=0.075 Sum_probs=42.7
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~ 146 (494)
...++|.++|+..|.+.++.+.. ++.+.++.|+++..++...+ ..+|+|+|+-
T Consensus 135 g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y------~~DIVygTPg 192 (970)
T PRK12899 135 GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY------QCDVVYGTAS 192 (970)
T ss_pred cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECCC
Confidence 34688999999999999888864 36788899999998876554 2689999983
No 275
>PRK01172 ski2-like helicase; Provisional
Probab=55.75 E-value=28 Score=38.69 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=49.7
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc-----ccccc-
Q 011060 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG- 150 (494)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd-----~~~~G- 150 (494)
+++.+..+.++|+.+|++..+.+.++.+.+ ++.+..++|+.....+ . + ...+|+|+|+ ++.+.
T Consensus 58 il~~l~~~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~--~---~--~~~dIiv~Tpek~~~l~~~~~ 130 (674)
T PRK01172 58 IYETFLAGLKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPD--F---I--KRYDVVILTSEKADSLIHHDP 130 (674)
T ss_pred HHHHHHhCCcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChh--h---h--ccCCEEEECHHHHHHHHhCCh
Confidence 344444567899999999999999888764 4667788888754321 1 1 2458999997 12222
Q ss_pred CCCCCccEEEE
Q 011060 151 LDIPNVDLIIH 161 (494)
Q Consensus 151 idip~v~~VI~ 161 (494)
..+.++++||.
T Consensus 131 ~~l~~v~lvVi 141 (674)
T PRK01172 131 YIINDVGLIVA 141 (674)
T ss_pred hHHhhcCEEEE
Confidence 23667888773
No 276
>PF12353 eIF3g: Eukaryotic translation initiation factor 3 subunit G ; InterPro: IPR024675 At least eleven different protein factors are involved in initiation of protein synthesis in eukaryotes. Binding of initiator tRNA and mRNA to the 40S subunit requires the presence of the translation initiation factors eIF-2 and eIF-3, with eIF-3 being particularly important for 80S ribosome dissociation and mRNA binding []. eIF-3 is the most complex translation inititation factor, consisting of about 13 putative subunits and having a molecular weight of between 550 - 700 kDa in mammalian cells. Subunits are designated eIF-3a - eIF-3m; the large number of subunits means that the interactions between the individual subunits that make up the eIF-3 complex are complex and varied. Subunit G is required for eIF3 integrity. This entry represents a domain of approximately 130 amino acids in length found at the N terminus of eukaryotic translation initiation factor 3 subunit G. This domain is commonly found in association with the RNA recognition domain PF00076 from PFAM.
Probab=55.50 E-value=6 Score=33.87 Aligned_cols=17 Identities=35% Similarity=0.761 Sum_probs=14.6
Q ss_pred CccccCCCCccccCCCCC
Q 011060 477 GACFNCGKSGHRASECPN 494 (494)
Q Consensus 477 ~~c~~c~~~gh~~~~cp~ 494 (494)
-.|..|+ -.||...||.
T Consensus 107 v~CR~Ck-GdH~T~~CPy 123 (128)
T PF12353_consen 107 VKCRICK-GDHWTSKCPY 123 (128)
T ss_pred EEeCCCC-CCcccccCCc
Confidence 3699996 8899999994
No 277
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=54.48 E-value=69 Score=29.22 Aligned_cols=87 Identities=20% Similarity=0.286 Sum_probs=51.0
Q ss_pred CcCCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCC--cEEEeccccccccccceEEEEEEcCCc----cHH
Q 011060 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNP--LNIDLVGNQDEKLAEGIKLYAISTTAT----SKR 75 (494)
Q Consensus 2 L~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~--~~v~~~~~~~~~~~~~i~~~~~~~~~~----~k~ 75 (494)
+|-||.+-++.|-.+ +.+++.+|+-|.+-|..+.+.+.... ..++++... .....+-++..+..... +|-
T Consensus 74 Idp~fKef~e~ike~---di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~-~~ih~dg~h~i~~~~ds~fG~dK~ 149 (220)
T COG4359 74 IDPGFKEFVEWIKEH---DIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNN-DYIHIDGQHSIKYTDDSQFGHDKS 149 (220)
T ss_pred cCccHHHHHHHHHHc---CCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecC-ceEcCCCceeeecCCccccCCCcc
Confidence 456677766666654 78999999999999999999888543 235554322 22223333333332221 454
Q ss_pred HHHHHHHHHHccCCeEEEEeC
Q 011060 76 TILSDLITVYAKGGKTIVFTQ 96 (494)
Q Consensus 76 ~~l~~ll~~~~~~~~~iVF~~ 96 (494)
.++.. +.++...++||-
T Consensus 150 ~vI~~----l~e~~e~~fy~G 166 (220)
T COG4359 150 SVIHE----LSEPNESIFYCG 166 (220)
T ss_pred hhHHH----hhcCCceEEEec
Confidence 44443 333444588874
No 278
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=54.19 E-value=68 Score=29.05 Aligned_cols=63 Identities=10% Similarity=0.176 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHccCC-eEEEEeCChHHHHHHHHHHHcc---CcEEEEeCCCCHHHHHHHHhhccCCc
Q 011060 75 RTILSDLITVYAKGG-KTIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGK 137 (494)
Q Consensus 75 ~~~l~~ll~~~~~~~-~~iVF~~t~~~~~~l~~~l~~~---~~~~~lhg~~~~~~R~~~~~~F~~g~ 137 (494)
.+++..+++.....+ ++-++-.+...++.+++.|++. +.+...||-+++++.+.+++..+...
T Consensus 34 ~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~ 100 (177)
T TIGR00696 34 PDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSG 100 (177)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcC
Confidence 456666666554444 5556666677778888888863 45555689998887777777766543
No 279
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=54.14 E-value=30 Score=39.01 Aligned_cols=68 Identities=19% Similarity=0.234 Sum_probs=49.0
Q ss_pred eEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc-ccc-------cCCCCCc
Q 011060 90 KTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AAR-------GLDIPNV 156 (494)
Q Consensus 90 ~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~-~~~-------Gidip~v 156 (494)
.+|-.+|-++....+-..|.. ++.+..-||++++.+|.+..++ -.+|||+|+- ++- -=.+.+|
T Consensus 75 ~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~----PPdILiTTPEsL~lll~~~~~r~~l~~v 150 (814)
T COG1201 75 YALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKN----PPHILITTPESLAILLNSPKFRELLRDV 150 (814)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCC----CCcEEEeChhHHHHHhcCHHHHHHhcCC
Confidence 567777878777777666652 6889999999999999877665 6789999982 111 1134678
Q ss_pred cEEEE
Q 011060 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
.+||.
T Consensus 151 r~VIV 155 (814)
T COG1201 151 RYVIV 155 (814)
T ss_pred cEEEe
Confidence 88884
No 280
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=53.68 E-value=9.2 Score=40.50 Aligned_cols=52 Identities=15% Similarity=0.134 Sum_probs=38.7
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc
Q 011060 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd 145 (494)
--+||..||++.|-++.+.|.+ .|.+-.+-|+..-+ .+.-|-..++|||||+
T Consensus 142 lGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k-----~E~eRi~~mNILVCTP 198 (758)
T KOG0343|consen 142 LGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVK-----FELERISQMNILVCTP 198 (758)
T ss_pred ceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhH-----HHHHhhhcCCeEEech
Confidence 4789999999999999999985 36677777775433 2222334689999998
No 281
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=53.53 E-value=51 Score=37.27 Aligned_cols=60 Identities=10% Similarity=0.103 Sum_probs=46.1
Q ss_pred HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCC-HHHHHHHHhhccCCcEEEEEecc
Q 011060 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDIS-QHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 79 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~-~~~R~~~~~~F~~g~~~iLVaTd 145 (494)
..++..+ .+..++|.++|+..|.+.++.+.. ++.+..+.|+++ .++|..+. ..+|+++|+
T Consensus 111 p~~l~al-~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~y------~~dIvygT~ 176 (790)
T PRK09200 111 PLYLNAL-EGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAIY------EADIIYTTN 176 (790)
T ss_pred HHHHHHH-cCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHhc------CCCEEEECC
Confidence 3333434 578999999999999988887763 578999999999 77777553 268999995
No 282
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=53.51 E-value=1.5e+02 Score=25.72 Aligned_cols=58 Identities=10% Similarity=-0.009 Sum_probs=32.9
Q ss_pred ceEEEeecCcccccCCCChhHHHHHhhhhcCCCcCccccEEEeecC----ceeeEEeecC-HHHHHHHHhhc
Q 011060 286 WVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADD----RVQGAVFDLP-EEIAKELLNKQ 352 (494)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~i~~~~----~~~gs~fdvp-~~~a~~~~~~~ 352 (494)
.++|+|..- ...++..+|..++..... |-.+.+..+. +...+||+-. .+.|+.+++..
T Consensus 34 ~~~lfVgnL----~~~~te~~L~~~F~~~G~-----I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~l 96 (144)
T PLN03134 34 STKLFIGGL----SWGTDDASLRDAFAHFGD-----VVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96 (144)
T ss_pred CCEEEEeCC----CCCCCHHHHHHHHhcCCC-----eEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHc
Confidence 456777532 235788999998876543 5556665331 1223566653 45555556543
No 283
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=53.27 E-value=5.9 Score=43.43 Aligned_cols=16 Identities=50% Similarity=1.356 Sum_probs=15.0
Q ss_pred ccccCCCCccccCCCC
Q 011060 478 ACFNCGKSGHRASECP 493 (494)
Q Consensus 478 ~c~~c~~~gh~~~~cp 493 (494)
.||.||+.||.+.||.
T Consensus 262 ~C~~cgq~gh~~~dc~ 277 (931)
T KOG2044|consen 262 RCFLCGQTGHEAKDCE 277 (931)
T ss_pred cchhhcccCCcHhhcC
Confidence 3999999999999996
No 284
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=52.42 E-value=26 Score=28.62 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=28.4
Q ss_pred HHccCCeEEEEeCCh--HHHHHHHHHHHc-cCcEEEEeCCCC
Q 011060 84 VYAKGGKTIVFTQTK--RDADEVSLALTS-IIASEALHGDIS 122 (494)
Q Consensus 84 ~~~~~~~~iVF~~t~--~~~~~l~~~l~~-~~~~~~lhg~~~ 122 (494)
.+.++.++||||++- ..+..++..|.. ++.+..|.|++.
T Consensus 60 ~i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~ 101 (110)
T cd01521 60 KLDKEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLD 101 (110)
T ss_pred cCCCCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHH
Confidence 344668999999975 356677777764 677888888873
No 285
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=48.84 E-value=1.6e+02 Score=32.77 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=70.6
Q ss_pred cCCccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHccC---cEEEE--------------------eCC--CC-
Q 011060 69 TTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII---ASEAL--------------------HGD--IS- 122 (494)
Q Consensus 69 ~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~---~~~~l--------------------hg~--~~- 122 (494)
.....|..++..+++.. +.++||.+++...++.++..|...+ .|..+ +-. .+
T Consensus 40 l~gs~ka~lia~l~~~~--~r~vLIVt~~~~~A~~l~~dL~~~~~~~~v~~f~s~~~~~~~~~~~P~~d~~~~~~~~~~~ 117 (652)
T PRK05298 40 VTGSGKTFTMANVIARL--QRPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINE 117 (652)
T ss_pred CCCcHHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHHHHHhcCCCeEEEeCChhhccCccccCCCCcccccccCCCCh
Confidence 44456776777666543 4689999999999999999987532 13322 111 11
Q ss_pred --HHHHHHHHhhccCCcEEEEEecccccccCCCCC----ccEEEEeCCCCCHhHHHHHhhcc
Q 011060 123 --QHQRERTLNGFRQGKFTVLVATDVAARGLDIPN----VDLIIHYELPNDPETFVHRSGRT 178 (494)
Q Consensus 123 --~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~----v~~VI~~~~P~~~~~y~qr~GR~ 178 (494)
..+|..++.++..++..|+|+|-.+..++--|+ ..+.+..+-..+.+.++.+.-..
T Consensus 118 ~~~~~R~~~l~~L~~~~~~ivv~s~~al~~~~~~~~~~~~~~~l~~G~~i~~~~l~~~L~~~ 179 (652)
T PRK05298 118 EIERLRHSATKSLLERRDVIVVASVSCIYGLGSPEEYLKMVLSLRVGQEIDRRELLRRLVDL 179 (652)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEcHHHhcCCCCHHHHHhceEEEeCCCCcCHHHHHHHHHHc
Confidence 346888899888776667777765556654443 33556667777788877766543
No 286
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=48.77 E-value=4.2e+02 Score=29.47 Aligned_cols=76 Identities=17% Similarity=0.250 Sum_probs=47.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-cC-------cEEEEeCCCCHHHHHHHHhhcc----CCcEEEEEec--ccccccCCC
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS-II-------ASEALHGDISQHQRERTLNGFR----QGKFTVLVAT--DVAARGLDI 153 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-~~-------~~~~lhg~~~~~~R~~~~~~F~----~g~~~iLVaT--d~~~~Gidi 153 (494)
++-+++|+++.+-...+.+.+.+ ++ +.+.+-..-+ -+.+++.|. .|.-.||+|. --+++|||+
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF 705 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINF 705 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccccc
Confidence 47899999999988888888774 21 1222222222 244555554 3444566554 568899999
Q ss_pred CC--ccEEEEeCCCC
Q 011060 154 PN--VDLIIHYELPN 166 (494)
Q Consensus 154 p~--v~~VI~~~~P~ 166 (494)
.| ...||..++|.
T Consensus 706 ~D~LgRaVvvVGlPy 720 (821)
T KOG1133|consen 706 SDDLGRAVVVVGLPY 720 (821)
T ss_pred ccccccEEEEeecCC
Confidence 75 34677777664
No 287
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=48.59 E-value=84 Score=28.20 Aligned_cols=63 Identities=11% Similarity=0.187 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHccC-CeEEEEeCChHHHHHHHHHHHccC---cEE-EEeCCCCHHHHHHHHhhccCCc
Q 011060 75 RTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSII---ASE-ALHGDISQHQRERTLNGFRQGK 137 (494)
Q Consensus 75 ~~~l~~ll~~~~~~-~~~iVF~~t~~~~~~l~~~l~~~~---~~~-~lhg~~~~~~R~~~~~~F~~g~ 137 (494)
.+++..+++..... .++-++-.+.+.++.++..|++.+ .+. ..|+-++.++.+.+++..+.-.
T Consensus 34 ~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~ 101 (172)
T PF03808_consen 34 SDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASG 101 (172)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcC
Confidence 45556666655444 455566667777788888898644 444 4566677888888888877644
No 288
>KOG2673 consensus Uncharacterized conserved protein, contains PSP domain [Function unknown]
Probab=48.46 E-value=8.7 Score=39.46 Aligned_cols=16 Identities=50% Similarity=1.367 Sum_probs=15.2
Q ss_pred cccCCCCccccCCCCC
Q 011060 479 CFNCGKSGHRASECPN 494 (494)
Q Consensus 479 c~~c~~~gh~~~~cp~ 494 (494)
||||+.+-|--||||+
T Consensus 131 CFNC~g~~hsLrdC~r 146 (485)
T KOG2673|consen 131 CFNCGGTPHSLRDCPR 146 (485)
T ss_pred ccccCCCCCccccCCC
Confidence 9999999999999995
No 289
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=47.20 E-value=78 Score=28.86 Aligned_cols=7 Identities=14% Similarity=0.330 Sum_probs=2.9
Q ss_pred ceEEEee
Q 011060 286 WVTLQLT 292 (494)
Q Consensus 286 ~~~~~~~ 292 (494)
++++.|.
T Consensus 28 va~fsVA 34 (182)
T PRK06958 28 VANIRLA 34 (182)
T ss_pred EEEEEEE
Confidence 3344443
No 290
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=47.09 E-value=78 Score=28.74 Aligned_cols=43 Identities=9% Similarity=0.171 Sum_probs=22.1
Q ss_pred CChhHHHHHhhhhcCCCcCccccEEEeecCc---eeeEEeecCHHHHHHHH
Q 011060 302 MSARSVMGFLSDVYPTAADEIGKIHIIADDR---VQGAVFDLPEEIAKELL 349 (494)
Q Consensus 302 ~~~~~i~~~i~~~~~~~~~~ig~i~i~~~~~---~~gs~fdvp~~~a~~~~ 349 (494)
+..++|-.++.++.+ |-.|++..... +.++-|+-|.+.-++|-
T Consensus 18 iRekeieDlFyKyg~-----i~~ieLK~r~g~ppfafVeFEd~RDAeDAiy 63 (241)
T KOG0105|consen 18 IREKEIEDLFYKYGR-----IREIELKNRPGPPPFAFVEFEDPRDAEDAIY 63 (241)
T ss_pred hhhccHHHHHhhhcc-----eEEEEeccCCCCCCeeEEEecCccchhhhhh
Confidence 455666666666554 45566644322 22344555655444443
No 291
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=46.93 E-value=1.3e+02 Score=35.18 Aligned_cols=82 Identities=17% Similarity=0.308 Sum_probs=53.8
Q ss_pred HHHHHhh--ccCCcEEEEEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcC--C-CCceEEEecChhhHHHHH
Q 011060 126 RERTLNG--FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA--G-KEGTAILMFTSSQRRTVR 200 (494)
Q Consensus 126 R~~~~~~--F~~g~~~iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~--g-~~g~~i~l~~~~e~~~~~ 200 (494)
+.....+ +++...+|||-+|.+-.|.|.|.+..+ -.|-|.---..+|.+-||.|. + ++.-.|+.+.......-+
T Consensus 580 ~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~Tm-YvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~gl~e~l~~ 658 (962)
T COG0610 580 KKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTL-YVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRGLKEALKK 658 (962)
T ss_pred HhhhhhhhcCcCCCCCEEEEEccccccCCccccceE-EeccccccchHHHHHHHhccCCCCCCCCcEEEECcchHHHHHH
Confidence 3444455 355678999999999999999977654 456677777899999999994 3 233333333333334444
Q ss_pred HHHHHhcC
Q 011060 201 SLERDVGC 208 (494)
Q Consensus 201 ~l~~~~~~ 208 (494)
.+.-+...
T Consensus 659 Al~~Y~~~ 666 (962)
T COG0610 659 ALKLYSNE 666 (962)
T ss_pred HHHHhhcc
Confidence 44444433
No 292
>COG1204 Superfamily II helicase [General function prediction only]
Probab=46.09 E-value=58 Score=36.77 Aligned_cols=79 Identities=25% Similarity=0.326 Sum_probs=54.3
Q ss_pred HHHHHHHHHHcc-CCeEEEEeCChHHHHHHHHHHH---c-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc----c
Q 011060 76 TILSDLITVYAK-GGKTIVFTQTKRDADEVSLALT---S-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD----V 146 (494)
Q Consensus 76 ~~l~~ll~~~~~-~~~~iVF~~t~~~~~~l~~~l~---~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd----~ 146 (494)
-++..+++.+.+ +.++|-.||++..|++.++.++ . +++|..++|+++... +.+ ...+|+|+|. +
T Consensus 63 IA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~-~~l------~~~~ViVtT~EK~Ds 135 (766)
T COG1204 63 IALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDD-ERL------ARYDVIVTTPEKLDS 135 (766)
T ss_pred HHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCcccch-hhh------ccCCEEEEchHHhhH
Confidence 334445555544 4799999999999999999998 2 689999999986443 111 2578999995 3
Q ss_pred cccc--CCCCCccEEEE
Q 011060 147 AARG--LDIPNVDLIIH 161 (494)
Q Consensus 147 ~~~G--idip~v~~VI~ 161 (494)
+-|- .=+.+|++||.
T Consensus 136 l~R~~~~~~~~V~lvVi 152 (766)
T COG1204 136 LTRKRPSWIEEVDLVVI 152 (766)
T ss_pred hhhcCcchhhcccEEEE
Confidence 3332 12346777773
No 293
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=45.84 E-value=26 Score=34.02 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=19.2
Q ss_pred CCCHhHHHHHhhccCcCCCC---ceEEEecChhh
Q 011060 165 PNDPETFVHRSGRTGRAGKE---GTAILMFTSSQ 195 (494)
Q Consensus 165 P~~~~~y~qr~GR~gR~g~~---g~~i~l~~~~e 195 (494)
+.+++.|..|.-+.-..|++ --+++++..++
T Consensus 76 g~~IE~ya~rlfd~W~lG~k~~~dGvLLlVa~~d 109 (271)
T COG1512 76 GETIEQYATRLFDKWKLGDKAQDDGVLLLVAMND 109 (271)
T ss_pred CCCHHHHHHHHHHhcCCCccccCCCEEEEEEcCC
Confidence 57889999998887445422 22445555544
No 294
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=45.73 E-value=61 Score=25.78 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=26.9
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc-cCc-EEEEeCCCC
Q 011060 86 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (494)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~~ 122 (494)
.++.++||||.+-..+...+..|.. ++. +..|.|++.
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 4667899999986666666777764 664 777888763
No 295
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=45.51 E-value=20 Score=39.50 Aligned_cols=77 Identities=23% Similarity=0.361 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHH-ccCCeEEEEeCChHHHHHHHHHHHccCcEEEEeCCCCHHHHHHHHhhccC---CcEEEEEecccccc
Q 011060 74 KRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQ---GKFTVLVATDVAAR 149 (494)
Q Consensus 74 k~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~F~~---g~~~iLVaTd~~~~ 149 (494)
|+.+|...++.+ ....+++||..-....+.|..++........+.|..+-.+|+.++++|.. ..+..|++|.+.+.
T Consensus 616 k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~ 695 (696)
T KOG0383|consen 616 KLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEGKYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGL 695 (696)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccCcceeccCCccchhhhhhccccCCCCccceEEEeecccccC
Confidence 444555555444 45679999999999999999988854478889999999999999999983 45678999987544
Q ss_pred c
Q 011060 150 G 150 (494)
Q Consensus 150 G 150 (494)
|
T Consensus 696 g 696 (696)
T KOG0383|consen 696 G 696 (696)
T ss_pred C
Confidence 3
No 296
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=45.48 E-value=74 Score=34.81 Aligned_cols=22 Identities=14% Similarity=0.351 Sum_probs=16.4
Q ss_pred CCChhHHHHHhhhhcCCCcCcc
Q 011060 301 FMSARSVMGFLSDVYPTAADEI 322 (494)
Q Consensus 301 ~~~~~~i~~~i~~~~~~~~~~i 322 (494)
.+++..|+..+++..++..++|
T Consensus 523 ~it~d~I~~~Va~~f~v~~~dl 544 (617)
T PRK14086 523 EITAAAIMAATADYFGLTVEDL 544 (617)
T ss_pred cCCHHHHHHHHHHHhCCCHHHH
Confidence 4678888888888887766665
No 297
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=45.27 E-value=55 Score=37.45 Aligned_cols=100 Identities=13% Similarity=0.194 Sum_probs=61.0
Q ss_pred CCeEEEEeCChHHHHH----HHHHHHc---cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc-cccc----cCC---
Q 011060 88 GGKTIVFTQTKRDADE----VSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-VAAR----GLD--- 152 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~----l~~~l~~---~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd-~~~~----Gid--- 152 (494)
..++|++.||+..+.. +.+++.. .+.+..++|+.++++|+.++. +..+||++|+ ++.. ..|
T Consensus 115 ~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~----~pp~IllTNpdMLh~~llr~~~~~~ 190 (851)
T COG1205 115 SARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIR----NPPDILLTNPDMLHYLLLRNHDAWL 190 (851)
T ss_pred CccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHh----CCCCEEEeCHHHHHHHhccCcchHH
Confidence 3577999999886654 4444443 257889999999999985554 4788999986 2222 211
Q ss_pred --CCCccEEEE-----eCC--CCCHhHHHHHhhccCcCCCCceEEEec
Q 011060 153 --IPNVDLIIH-----YEL--PNDPETFVHRSGRTGRAGKEGTAILMF 191 (494)
Q Consensus 153 --ip~v~~VI~-----~~~--P~~~~~y~qr~GR~gR~g~~g~~i~l~ 191 (494)
..++.+||. |+- =.++...+-|.-|-.|.......++..
T Consensus 191 ~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~ 238 (851)
T COG1205 191 WLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICT 238 (851)
T ss_pred HHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEE
Confidence 234566552 321 235666677777666644333334433
No 298
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=45.25 E-value=47 Score=31.68 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc
Q 011060 74 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 110 (494)
Q Consensus 74 k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~ 110 (494)
++.....++..+...+..|+|+.|++.+.+......+
T Consensus 49 ~l~~A~~~v~~~~~~~g~ILfVgTK~~a~~~V~~~A~ 85 (252)
T COG0052 49 RLREAYKFLRRIAANGGKILFVGTKKQAQEPVKEFAE 85 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEechHHHHHHHHHHHH
Confidence 3444455566666668889999999999887766654
No 299
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=44.59 E-value=90 Score=34.80 Aligned_cols=57 Identities=16% Similarity=0.214 Sum_probs=42.2
Q ss_pred cCCeEEEEeCChHHHHHHHHHHH--ccCcEEEEeCCCCHHHHHHHHhhcc-CCcEEEEEecc
Q 011060 87 KGGKTIVFTQTKRDADEVSLALT--SIIASEALHGDISQHQRERTLNGFR-QGKFTVLVATD 145 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~--~~~~~~~lhg~~~~~~R~~~~~~F~-~g~~~iLVaTd 145 (494)
.+++-||.||-.-.-..+.+.-+ -.+.+..+||+ +++|....+.+. .+..+|+|+|=
T Consensus 216 ~~GPfLVi~P~StL~NW~~Ef~rf~P~l~~~~~~Gd--k~eR~~~~r~~~~~~~fdV~iTsY 275 (971)
T KOG0385|consen 216 IPGPFLVIAPKSTLDNWMNEFKRFTPSLNVVVYHGD--KEERAALRRDIMLPGRFDVCITSY 275 (971)
T ss_pred CCCCeEEEeeHhhHHHHHHHHHHhCCCcceEEEeCC--HHHHHHHHHHhhccCCCceEeehH
Confidence 46899999997655554444433 26889999999 688888777764 56889999884
No 300
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=44.38 E-value=41 Score=38.22 Aligned_cols=53 Identities=17% Similarity=0.235 Sum_probs=37.3
Q ss_pred CeEEEEe-CChHHHHHHHHHHHc----------------------------cCcEEEEeCCCCHHHHHHHHhhccCCcEE
Q 011060 89 GKTIVFT-QTKRDADEVSLALTS----------------------------IIASEALHGDISQHQRERTLNGFRQGKFT 139 (494)
Q Consensus 89 ~~~iVF~-~t~~~~~~l~~~l~~----------------------------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~ 139 (494)
.+.|||+ +|++.++++++.+.+ .+.+..++|+.+.+.+...+. . ...
T Consensus 62 ~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~---~-~p~ 137 (844)
T TIGR02621 62 PRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDP---H-RPA 137 (844)
T ss_pred cceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcC---C-CCc
Confidence 4677766 999998888776652 145778899988765544333 2 568
Q ss_pred EEEecc
Q 011060 140 VLVATD 145 (494)
Q Consensus 140 iLVaTd 145 (494)
|||+|.
T Consensus 138 IIVgT~ 143 (844)
T TIGR02621 138 VIVGTV 143 (844)
T ss_pred EEEECH
Confidence 999993
No 301
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=44.29 E-value=80 Score=30.40 Aligned_cols=69 Identities=19% Similarity=0.287 Sum_probs=45.0
Q ss_pred CeEEEEeCChHHHHHHHHHHHcc----CcEEEEeCC-CCHHHHHHHHhhccCCcEEEEEecc-----cc-cccCCCCCcc
Q 011060 89 GKTIVFTQTKRDADEVSLALTSI----IASEALHGD-ISQHQRERTLNGFRQGKFTVLVATD-----VA-ARGLDIPNVD 157 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~~----~~~~~lhg~-~~~~~R~~~~~~F~~g~~~iLVaTd-----~~-~~Gidip~v~ 157 (494)
..+||+|.+--.|-.|...|... ..|.-|-+. +.-+++...++ ...+.|.|+|+ ++ .-.+.+..+.
T Consensus 127 P~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~---~~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 127 PHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLK---KTRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHH---hCCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 46899999988888888888742 233333332 34455555554 45788999998 22 3346667777
Q ss_pred EEE
Q 011060 158 LII 160 (494)
Q Consensus 158 ~VI 160 (494)
+||
T Consensus 204 ~iv 206 (252)
T PF14617_consen 204 RIV 206 (252)
T ss_pred EEE
Confidence 766
No 302
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=43.85 E-value=85 Score=28.24 Aligned_cols=121 Identities=21% Similarity=0.213 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHhCC-CCCcEEEEeecC-ChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHHH
Q 011060 5 GFEEDVELILENLP-PKRQSMLFSATM-PSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 82 (494)
Q Consensus 5 GF~~~l~~Il~~~~-~~~q~il~SAT~-~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll 82 (494)
.|.+++..||+.+. ...++.+.|-|- |++.+++.+.+.-+...... .....-... ....+..|..-+..|.
T Consensus 45 ~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~-----~~~~~~F~~--~eI~~gsK~~Hf~~i~ 117 (169)
T PF12689_consen 45 SLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDG-----VPLIEYFDY--LEIYPGSKTTHFRRIH 117 (169)
T ss_dssp ---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C---------------CCECE--EEESSS-HHHHHHHHH
T ss_pred EeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCcccccc-----ccchhhcch--hheecCchHHHHHHHH
Confidence 47788999998886 477888888775 55666666554323000000 111111222 2333457887777777
Q ss_pred HHHccC-CeEEEEeCChHHHHHHHHHHHccCcEEEEeCCCCHHHHHHHHhhccC
Q 011060 83 TVYAKG-GKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQ 135 (494)
Q Consensus 83 ~~~~~~-~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~F~~ 135 (494)
+...-. ..+|.|=+....++.+.. -+..+.....+|+.+.=++-+++|++
T Consensus 118 ~~tgI~y~eMlFFDDe~~N~~~v~~---lGV~~v~v~~Glt~~~~~~gL~~~~~ 168 (169)
T PF12689_consen 118 RKTGIPYEEMLFFDDESRNIEVVSK---LGVTCVLVPDGLTWDEFERGLEKFRK 168 (169)
T ss_dssp HHH---GGGEEEEES-HHHHHHHHT---TT-EEEE-SSS--HHHHHHHHHHHHH
T ss_pred HhcCCChhHEEEecCchhcceeeEe---cCcEEEEeCCCCCHHHHHHHHHHHhh
Confidence 655333 355555555555554432 24555555678998888888888764
No 303
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=43.74 E-value=1.6e+02 Score=30.71 Aligned_cols=22 Identities=9% Similarity=0.067 Sum_probs=15.1
Q ss_pred CCChhHHHHHhhhhcCCCcCcc
Q 011060 301 FMSARSVMGFLSDVYPTAADEI 322 (494)
Q Consensus 301 ~~~~~~i~~~i~~~~~~~~~~i 322 (494)
..++.+|-.++....++....|
T Consensus 299 da~~~~l~~~Fk~FG~Ik~~~I 320 (419)
T KOG0116|consen 299 DATPAELEEVFKQFGPIKEGGI 320 (419)
T ss_pred CCCHHHHHHHHhhcccccccce
Confidence 4677888888877777665433
No 304
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=43.02 E-value=1.3e+02 Score=26.99 Aligned_cols=63 Identities=11% Similarity=0.221 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHcc-CCeEEEEeCChHHHHHHHHHHHcc---CcEEE-EeCCCCHHHHHHHHhhccCCc
Q 011060 75 RTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTSI---IASEA-LHGDISQHQRERTLNGFRQGK 137 (494)
Q Consensus 75 ~~~l~~ll~~~~~-~~~~iVF~~t~~~~~~l~~~l~~~---~~~~~-lhg~~~~~~R~~~~~~F~~g~ 137 (494)
.+++..+++.... +.++-++-.+.+.++.+++.|++. +.+.. .|+-+...+...+++..+...
T Consensus 32 ~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~ 99 (171)
T cd06533 32 SDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASG 99 (171)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcC
Confidence 4555666665543 456667777788888888888864 44444 677787777766777666543
No 305
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=42.87 E-value=2e+02 Score=25.07 Aligned_cols=78 Identities=15% Similarity=0.125 Sum_probs=49.4
Q ss_pred HHHHHHH-HHccCCeEEEEeCChHHHHHHHHHHHcc-CcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCC
Q 011060 77 ILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (494)
Q Consensus 77 ~l~~ll~-~~~~~~~~iVF~~t~~~~~~l~~~l~~~-~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip 154 (494)
++..|+. .+..+.+++|-|.+...++.|-+.|-.. -...+-|+--. +.... ...|+|++.- .-=+.+
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LWt~~~~sFiPH~~~~--------e~~~~-~qPIli~~~~--~~pn~~ 85 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLWTFSAESFIPHNLAG--------EPPPA-GQPILIAWPG--GNPNSA 85 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhhhccchhcccCCccCC--------CCCCC-CCCEEEEcCC--CCCCCC
Confidence 6666664 4567889999999999999999988642 12222344321 12222 3458988863 233456
Q ss_pred CccEEEEeCCC
Q 011060 155 NVDLIIHYELP 165 (494)
Q Consensus 155 ~v~~VI~~~~P 165 (494)
.++++||.-.+
T Consensus 86 ~~~~lInl~d~ 96 (144)
T COG2927 86 RVDLLINLADE 96 (144)
T ss_pred ceeEEEecccc
Confidence 77889985544
No 306
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=41.81 E-value=99 Score=35.12 Aligned_cols=62 Identities=13% Similarity=0.108 Sum_probs=47.7
Q ss_pred HHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc
Q 011060 78 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 78 l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~ 146 (494)
+..++..+ .+..+-|.++|...|.+-++.+.. ++.+..+.++++.++|..++. .+|+++|+.
T Consensus 113 lpa~l~aL-~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~------~dI~ygT~~ 179 (830)
T PRK12904 113 LPAYLNAL-TGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYA------ADITYGTNN 179 (830)
T ss_pred HHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcC------CCeEEECCc
Confidence 33334444 456788999999988888877763 578899999999999888864 679999973
No 307
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=40.17 E-value=1.1e+02 Score=27.12 Aligned_cols=82 Identities=13% Similarity=0.139 Sum_probs=51.3
Q ss_pred CCccHHHHHHHHHHH-HccCCeEEEEeCChHHHHHHHHHHHccCc-EEEEeCCCCHHHHHHHHhhccCCcEEEEEecccc
Q 011060 70 TATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTSIIA-SEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (494)
Q Consensus 70 ~~~~k~~~l~~ll~~-~~~~~~~iVF~~t~~~~~~l~~~l~~~~~-~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~ 147 (494)
....+...+..|++. +..+.+++|.|++.+.++.|-+.|=..-. ...=|+-..... .....|+|+++.-
T Consensus 10 ~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf~~~SFlPH~~~~~~~---------~a~~PV~L~~~~~ 80 (154)
T PRK06646 10 SDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKLDPQ---------PEKQPIYITDELQ 80 (154)
T ss_pred CCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCCCCCCCCCCCCCCCCC---------CCCCCEEEecCCC
Confidence 556788888888754 56778999999999999999888864211 222344211110 1245788875421
Q ss_pred cccCCCCCccEEEEeCC
Q 011060 148 ARGLDIPNVDLIIHYEL 164 (494)
Q Consensus 148 ~~Gidip~v~~VI~~~~ 164 (494)
+.+..+++||.+.
T Consensus 81 ----~p~~~~vLiNL~~ 93 (154)
T PRK06646 81 ----NPNNASVLVIISP 93 (154)
T ss_pred ----CCCCCCEEEECCC
Confidence 2225567888765
No 308
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=39.17 E-value=73 Score=27.71 Aligned_cols=45 Identities=11% Similarity=0.099 Sum_probs=33.7
Q ss_pred HHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cC-cEEEEeCCC
Q 011060 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDI 121 (494)
Q Consensus 77 ~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~-~~~~lhg~~ 121 (494)
.|...+..+..+.++||+|.+-..+..++..|.. ++ .+..|.|++
T Consensus 38 ~l~~~l~~l~~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~ 84 (145)
T cd01535 38 QLAQALEKLPAAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGT 84 (145)
T ss_pred HHHHHHHhcCCCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcH
Confidence 3445555555667899999998888878878874 44 789999996
No 309
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=39.09 E-value=43 Score=25.85 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=29.1
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-cCc-EEEEeCCCC
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~~ 122 (494)
+..++||||.+-..+..++..|.. ++. +..|.|++.
T Consensus 55 ~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 55 KDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred CCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 457899999998888888888875 555 888888874
No 310
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=38.76 E-value=1.7e+02 Score=27.00 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc
Q 011060 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 110 (494)
Q Consensus 75 ~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~ 110 (494)
.+.|..++......+..|++.........+.+.|.+
T Consensus 108 ~~~L~~~i~~~~~~~~~il~~~g~~~~~~l~~~L~~ 143 (239)
T cd06578 108 SEGLLELLELQDGKGKRILRPRGGRAREDLAEALRE 143 (239)
T ss_pred HHHHHHHHHhcCCCCCEEEEEcCcchhHHHHHHHHH
Confidence 333444444432234445555555555677777764
No 311
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=38.72 E-value=3e+02 Score=29.64 Aligned_cols=136 Identities=10% Similarity=0.095 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEec-cccccccc--cceEEEEEEcCCccHHHHHHHHH
Q 011060 6 FEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLV-GNQDEKLA--EGIKLYAISTTATSKRTILSDLI 82 (494)
Q Consensus 6 F~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~-~~~~~~~~--~~i~~~~~~~~~~~k~~~l~~ll 82 (494)
+.+-++.|....+...++-.+.+.+...+....++...+...|-+. +.....+. .++....+.....+-+.+|...
T Consensus 15 l~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~dviIsrG~ta~~i~~~~~iPVv~i~~s~~Dil~al~~a- 93 (526)
T TIGR02329 15 LFDLFRDIAPEFDHRANITPIQLGFEDAVREIRQRLGAERCDVVVAGGSNGAYLKSRLSLPVIVIKPTGFDVMQALARA- 93 (526)
T ss_pred HHHHHHHHHHhCCCCceEEEEeccHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHhCCCCEEEecCChhhHHHHHHHH-
Confidence 4556666777766446677888888665554434444432222222 11111111 1233444444444544444332
Q ss_pred HHHccCCeEEEEeCChHHHHHHHHHHHccCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc
Q 011060 83 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 83 ~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd 145 (494)
+.+...--+|-|-+....+..++..|.-.+....+|.. ++-...++..+...++++|+..
T Consensus 94 ~~~~~~ia~vg~~~~~~~~~~~~~ll~~~i~~~~~~~~---~e~~~~~~~l~~~G~~~viG~~ 153 (526)
T TIGR02329 94 RRIASSIGVVTHQDTPPALRRFQAAFNLDIVQRSYVTE---EDARSCVNDLRARGIGAVVGAG 153 (526)
T ss_pred HhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCH---HHHHHHHHHHHHCCCCEEECCh
Confidence 22322234566777788888999998766777777754 4445556666665677777643
No 312
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=38.69 E-value=71 Score=29.32 Aligned_cols=64 Identities=16% Similarity=0.192 Sum_probs=42.6
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHccCcEEEEeCCCCHH--------HHHHHHhhccCCcE-EEEEeccccccc
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQH--------QRERTLNGFRQGKF-TVLVATDVAARG 150 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~--------~R~~~~~~F~~g~~-~iLVaTd~~~~G 150 (494)
.+..+|..+.+.+++..+.+.-.-.=...+|||-+++- .-...+++..++.+ .|++||+.-..|
T Consensus 77 Rd~~~icVVe~p~Dv~a~E~~~~f~G~YhVL~G~lspl~gigpe~l~i~~L~~Rl~~~~~~EvIlAtnpTvEG 149 (198)
T COG0353 77 RDKSQLCVVEEPKDVLALEKTGEFRGLYHVLGGLLSPLDGIGPEDLNIDELLQRLAEGSIKEVILATNPTVEG 149 (198)
T ss_pred cCCceEEEEcchHHHHHHHHhcccCeeEEEecCccCcccCCCcccccHHHHHHHHhcCCCceEEEecCCCccc
Confidence 45678999999988887655432111244567655443 33667788888888 899999865444
No 313
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=38.66 E-value=3e+02 Score=24.92 Aligned_cols=60 Identities=10% Similarity=0.063 Sum_probs=34.2
Q ss_pred CceEEEeecCcccccCCCChhHHHHHhhhhcCCCcCccccEEEeecC-ceeeEEeecCHHHHHHHHhhcC
Q 011060 285 GWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADD-RVQGAVFDLPEEIAKELLNKQI 353 (494)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~i~~~~-~~~gs~fdvp~~~a~~~~~~~~ 353 (494)
..+.|+|..-. ...+..+|-.++..+.++. .+.|.-+. -+.++-|+-|.+..+++-.+..
T Consensus 9 ~~~kVYVGnL~----~~a~k~eLE~~F~~yG~lr-----svWvArnPPGfAFVEFed~RDA~DAvr~LDG 69 (195)
T KOG0107|consen 9 GNTKVYVGNLG----SRATKRELERAFSKYGPLR-----SVWVARNPPGFAFVEFEDPRDAEDAVRYLDG 69 (195)
T ss_pred CCceEEeccCC----CCcchHHHHHHHHhcCcce-----eEEEeecCCCceEEeccCcccHHHHHhhcCC
Confidence 35667775432 3467889988888877644 34443321 1223555666666666555543
No 314
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=38.64 E-value=66 Score=36.21 Aligned_cols=71 Identities=18% Similarity=0.305 Sum_probs=56.3
Q ss_pred cEEEEEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcC--CCCceE-----------EEecChhhHHHHHHHH
Q 011060 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA--GKEGTA-----------ILMFTSSQRRTVRSLE 203 (494)
Q Consensus 137 ~~~iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~--g~~g~~-----------i~l~~~~e~~~~~~l~ 203 (494)
..+.|.+-.++-.|.|=|+|=.++-.....|..+=+|.+||.-|. ...|.- .+++...+..+++.|+
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lq 562 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQ 562 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHH
Confidence 367999999999999999999999999889999999999998882 334432 3356667777777776
Q ss_pred HHhc
Q 011060 204 RDVG 207 (494)
Q Consensus 204 ~~~~ 207 (494)
+.+.
T Consensus 563 kEI~ 566 (985)
T COG3587 563 KEIN 566 (985)
T ss_pred HHHH
Confidence 6553
No 315
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=37.73 E-value=72 Score=24.84 Aligned_cols=43 Identities=14% Similarity=0.241 Sum_probs=31.6
Q ss_pred HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cC-cEEEEeCCC
Q 011060 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDI 121 (494)
Q Consensus 79 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~-~~~~lhg~~ 121 (494)
...+..+.++.++||+|.+-..+...+..|.. ++ .+..+.|++
T Consensus 47 ~~~~~~~~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~ 91 (96)
T cd01444 47 DDWLGDLDRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGF 91 (96)
T ss_pred HHHHhhcCCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCH
Confidence 34444455678999999988888888888875 55 466777775
No 316
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=37.68 E-value=1.1e+02 Score=35.53 Aligned_cols=83 Identities=25% Similarity=0.224 Sum_probs=54.9
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc----ccccc-CC----C
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD----VAARG-LD----I 153 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd----~~~~G-id----i 153 (494)
+.|+|-..|+++.|.++++.+.+ ++.|..|.||+.-. +.++. ..+|||+|+ ++.|- .+ +
T Consensus 164 ~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~-~tei~------~tqiiVTTPEKwDvvTRk~~~d~~l~ 236 (1230)
T KOG0952|consen 164 DFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQLT-KTEIA------DTQIIVTTPEKWDVVTRKSVGDSALF 236 (1230)
T ss_pred CceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchhh-HHHHH------hcCEEEecccceeeeeeeeccchhhh
Confidence 46888889999999999998875 46799999998444 34443 578999996 44432 21 2
Q ss_pred CCccEEEEeC-------CCCCHhHHHHHhhc
Q 011060 154 PNVDLIIHYE-------LPNDPETFVHRSGR 177 (494)
Q Consensus 154 p~v~~VI~~~-------~P~~~~~y~qr~GR 177 (494)
..|.+||.-. --..+++.+-|.=|
T Consensus 237 ~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr 267 (1230)
T KOG0952|consen 237 SLVRLVIIDEVHLLHDDRGPVLETIVARTLR 267 (1230)
T ss_pred hheeeEEeeeehhhcCcccchHHHHHHHHHH
Confidence 4556666321 11246666665554
No 317
>PF12614 RRF_GI: Ribosome recycling factor ; InterPro: IPR022253 This family of proteins is found in bacteria and viruses. Proteins in this family are approximately 130 amino acids in length. There are two conserved sequence motifs: LPS and LKR. Overproduction of ribosome recycling factor (RRF) reduces tna operon expression and increases the rate of cleavage of TnaC-tRNA(2)(Pro), relieving the growth inhibition associated with plasmid-mediated tnaC overexpression.
Probab=36.08 E-value=1.5e+02 Score=25.23 Aligned_cols=85 Identities=19% Similarity=0.338 Sum_probs=40.2
Q ss_pred CHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccCCCChHHHH--HHHHHHHHHHhccCCccchhhh
Q 011060 167 DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL--ESSAEQVVATLNGVHPESVEFF 244 (494)
Q Consensus 167 ~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 244 (494)
+..+++||+|+.. .+.++.+....+..++++.-...-.+. ...+..+...++....+.+.+.
T Consensus 8 ~LpSlIHRig~~~----------------~k~~ka~A~q~~CeLKRVRRSRnWql~Ge~~~l~~~~~~lk~~~~~~~~~l 71 (128)
T PF12614_consen 8 PLPSLIHRIGREA----------------VKQAKALARQHGCELKRVRRSRNWQLSGEADQLQSFLDQLKAEDYEEFQFL 71 (128)
T ss_pred ccHHHHHHhhHHH----------------HHHHHHHHHHhCchHHHHHHhhhhHHhhhHHHHHHHHHHHHhcchHHHHHH
Confidence 4569999999842 234555666666666554322211111 1233344444544444444444
Q ss_pred HHHHHHHHhhhC--HHHHHHHHHHH
Q 011060 245 TPTAQRLIEEKG--TDALAAALAQL 267 (494)
Q Consensus 245 ~~~~~~l~~~~~--~~~l~~al~~l 267 (494)
...++..+..+. .+-+...|..|
T Consensus 72 i~kie~~L~~~~dkle~l~~~L~~L 96 (128)
T PF12614_consen 72 IKKIEAALLQHSDKLEPLEDKLARL 96 (128)
T ss_pred HHHHHHHhcccccccchHHHHHHHH
Confidence 444444333222 23444444444
No 318
>KOG2560 consensus RNA splicing factor - Slu7p [RNA processing and modification]
Probab=35.48 E-value=9.4 Score=39.18 Aligned_cols=16 Identities=50% Similarity=1.221 Sum_probs=14.9
Q ss_pred CccccCCCCccccCCC
Q 011060 477 GACFNCGKSGHRASEC 492 (494)
Q Consensus 477 ~~c~~c~~~gh~~~~c 492 (494)
|+|-|||.-+|-.+||
T Consensus 113 GACeNCGAmtHk~KDC 128 (529)
T KOG2560|consen 113 GACENCGAMTHKVKDC 128 (529)
T ss_pred hhhhhhhhhhcchHHH
Confidence 4699999999999999
No 319
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=34.96 E-value=94 Score=24.67 Aligned_cols=36 Identities=17% Similarity=0.141 Sum_probs=27.6
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-cC-cEEEEeCCCC
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 122 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~-~~~~lhg~~~ 122 (494)
++.+++|||++-..+...+..|.+ ++ .+..|.|++.
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~ 94 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGID 94 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHH
Confidence 367999999997777777777775 55 4778888864
No 320
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=34.76 E-value=50 Score=32.12 Aligned_cols=8 Identities=38% Similarity=0.501 Sum_probs=4.3
Q ss_pred EEEEEecc
Q 011060 138 FTVLVATD 145 (494)
Q Consensus 138 ~~iLVaTd 145 (494)
+-+||+++
T Consensus 101 vLLlVa~~ 108 (271)
T COG1512 101 VLLLVAMN 108 (271)
T ss_pred EEEEEEcC
Confidence 44556654
No 321
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=33.78 E-value=5.3e+02 Score=26.26 Aligned_cols=133 Identities=19% Similarity=0.214 Sum_probs=84.0
Q ss_pred EEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHHHHH-HccCCeEEEEeCChHHH
Q 011060 23 SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRDA 101 (494)
Q Consensus 23 ~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~-~~~~~~~iVF~~t~~~~ 101 (494)
.+-.+.|+++--+..+...+.. . .....+....+.-.-|.+.+...++. +..+..+.|-.|..+.|
T Consensus 91 ~L~W~G~Ls~~Q~~as~~l~q~------i-------~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVc 157 (441)
T COG4098 91 VLQWKGTLSPGQKKASNQLVQY------I-------KQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVC 157 (441)
T ss_pred eeeeccccChhHHHHHHHHHHH------H-------HhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccch
Confidence 6778888877655554433210 0 01112233444455666666665543 45678999999999999
Q ss_pred HHHHHHHHcc---CcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc-ccccCCCCCccEEEE--e-CCCCCHhHHHHH
Q 011060 102 DEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARGLDIPNVDLIIH--Y-ELPNDPETFVHR 174 (494)
Q Consensus 102 ~~l~~~l~~~---~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~-~~~Gidip~v~~VI~--~-~~P~~~~~y~qr 174 (494)
-+|+..|+.. ..+..|||+-++. |+ ..++|||.- +-|--+ ..+++|. . .+|.+.+..+|-
T Consensus 158 lEl~~Rlk~aF~~~~I~~Lyg~S~~~--------fr---~plvVaTtHQLlrFk~--aFD~liIDEVDAFP~~~d~~L~~ 224 (441)
T COG4098 158 LELYPRLKQAFSNCDIDLLYGDSDSY--------FR---APLVVATTHQLLRFKQ--AFDLLIIDEVDAFPFSDDQSLQY 224 (441)
T ss_pred HHHHHHHHHhhccCCeeeEecCCchh--------cc---ccEEEEehHHHHHHHh--hccEEEEeccccccccCCHHHHH
Confidence 9999999963 5688999996554 33 467787752 222211 3344443 2 368888888888
Q ss_pred hhccCcC
Q 011060 175 SGRTGRA 181 (494)
Q Consensus 175 ~GR~gR~ 181 (494)
+-+-+|.
T Consensus 225 Av~~ark 231 (441)
T COG4098 225 AVKKARK 231 (441)
T ss_pred HHHHhhc
Confidence 8777774
No 322
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=33.76 E-value=28 Score=28.06 Aligned_cols=60 Identities=18% Similarity=0.274 Sum_probs=38.7
Q ss_pred EEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHH------------HHHHHHhhccCCcEEEEEeccccccc
Q 011060 91 TIVFTQTKRDADEVSLALTS-IIASEALHGDISQH------------QRERTLNGFRQGKFTVLVATDVAARG 150 (494)
Q Consensus 91 ~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~------------~R~~~~~~F~~g~~~iLVaTd~~~~G 150 (494)
.||.+.....+..+++.|.. .+.+....|.+-.. .+.+.+.+.-...-.|+||||.-..|
T Consensus 1 ~liIvE~ps~a~~i~~~l~~~~~~v~~~~Ghl~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~iiiatD~D~EG 73 (100)
T PF01751_consen 1 ELIIVEKPSDAKAIAKALGGEEYIVIATSGHLLELAKPEDYDPKDKKKQIKNLKKLLKKADEIIIATDPDREG 73 (100)
T ss_dssp EEEEESSHHHHHHHHHHSSTTTEEEEEESSSSEESTTSSHHHCHTTHHHHHHHHHHHHSCSEEEEEC-SSHHH
T ss_pred CEEEEeCHHHHHHHHHHcCCCCEEEEEeCCcccccccccccccccccccchhhHHHhhhccEeeecCCCChHH
Confidence 47889999999999999873 45666666654211 22344444434456799999976555
No 323
>PF13245 AAA_19: Part of AAA domain
Probab=33.65 E-value=79 Score=24.11 Aligned_cols=40 Identities=30% Similarity=0.386 Sum_probs=29.0
Q ss_pred cCCccHHHHHHHHHHHHc-c----CCeEEEEeCChHHHHHHHHHH
Q 011060 69 TTATSKRTILSDLITVYA-K----GGKTIVFTQTKRDADEVSLAL 108 (494)
Q Consensus 69 ~~~~~k~~~l~~ll~~~~-~----~~~~iVF~~t~~~~~~l~~~l 108 (494)
.+-.-|..++..++..+. . +.++||.++|+..++.+.+.|
T Consensus 18 ~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 18 PPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 344567755555554432 1 678999999999999999888
No 324
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=33.11 E-value=1e+02 Score=24.89 Aligned_cols=36 Identities=11% Similarity=0.010 Sum_probs=26.6
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-cCc--EEEEeCCCC
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS-IIA--SEALHGDIS 122 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~--~~~lhg~~~ 122 (494)
++.+++|||.+-..+...+..|.. ++. +..|.|+|.
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~ 103 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQ 103 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHH
Confidence 346899999887666666777764 663 778889874
No 325
>PTZ00240 60S ribosomal protein P0; Provisional
Probab=33.05 E-value=2.9e+02 Score=27.70 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=24.5
Q ss_pred ccCCCCCccEEE---EeCCCCCHhHHHHHhhccCcCCCCceEEE
Q 011060 149 RGLDIPNVDLII---HYELPNDPETFVHRSGRTGRAGKEGTAIL 189 (494)
Q Consensus 149 ~Gidip~v~~VI---~~~~P~~~~~y~qr~GR~gR~g~~g~~i~ 189 (494)
|.=++...++|| +..++.+...+.|..|=.-+. ..|...+
T Consensus 119 raG~IAp~dVvvpaG~T~~~P~~~s~fq~LGIpTkI-~kGkIeI 161 (323)
T PTZ00240 119 RVGAIAPCDVIVPAGSTGMEPTQTSFFQALNIATKI-AKGMVEI 161 (323)
T ss_pred cCCCCCCceEEECCCCCCCCCcchHHHHHcCCCeEe-cCcEEEE
Confidence 333445566666 455666788899988876554 2444433
No 326
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=32.98 E-value=85 Score=36.26 Aligned_cols=57 Identities=19% Similarity=0.162 Sum_probs=48.2
Q ss_pred CeEEEEeCChHHHHHHHHHH-HccCcEEEEeCCCCHHHHHHHHhhccCC--cEEEEEecc
Q 011060 89 GKTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQG--KFTVLVATD 145 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l-~~~~~~~~lhg~~~~~~R~~~~~~F~~g--~~~iLVaTd 145 (494)
+-+||..|-....+.....| ...+.+..||+.++..+|..+++.+.++ .++||--|+
T Consensus 305 gitvVISPL~SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtP 364 (941)
T KOG0351|consen 305 GVTVVISPLISLMQDQVTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTP 364 (941)
T ss_pred CceEEeccHHHHHHHHHHhhhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCH
Confidence 45677777777777766666 4589999999999999999999999999 899988887
No 327
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=32.19 E-value=80 Score=24.80 Aligned_cols=36 Identities=11% Similarity=0.007 Sum_probs=27.6
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc-cC-cEEEEeCCC
Q 011060 86 AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDI 121 (494)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~-~~-~~~~lhg~~ 121 (494)
.++.++||||++-..+...+..|.. ++ .+..|.|+|
T Consensus 54 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~ 91 (96)
T cd01529 54 GRATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGT 91 (96)
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCH
Confidence 4567899999997777777777764 55 577788876
No 328
>cd00188 TOPRIM Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA, type IIA and type IIB topoisomerases, bacterial DnaG-type primases, small primase-like proteins from bacteria and archaea, OLD family nucleases from bacterial and archaea, and bacterial DNA repair proteins of the RecR/M family. This domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases and in strand joining in topoisomerases and, as a general acid in strand cleavage by topisomerases and nucleases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=31.91 E-value=1.4e+02 Score=21.67 Aligned_cols=60 Identities=23% Similarity=0.151 Sum_probs=35.9
Q ss_pred EEEEeCChHHHHHHHHHHHccCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccC
Q 011060 91 TIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 151 (494)
Q Consensus 91 ~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gi 151 (494)
.+|+|....++..+.........+..+.|.........+...++. ...|++++|.-..|.
T Consensus 2 ~viivEg~~d~~~l~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-~~~v~i~~D~D~~g~ 61 (83)
T cd00188 2 KLIIVEGPSDALALAQAGGYGGAVVALGGHALNKTRELLKRLLGE-AKEVIIATDADREGE 61 (83)
T ss_pred EEEEEecHHHHHHHHHHcCCCEEEEEEccEEcHHHHHHHHHHhcC-CCEEEEEcCCChhHH
Confidence 478888888888777776544556666665443233333333332 567888887554443
No 329
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=30.76 E-value=4.7e+02 Score=24.75 Aligned_cols=83 Identities=11% Similarity=0.143 Sum_probs=56.9
Q ss_pred CCeEEEEeCC------------hHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccC---CcEEEEEecccccccC
Q 011060 88 GGKTIVFTQT------------KRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ---GKFTVLVATDVAARGL 151 (494)
Q Consensus 88 ~~~~iVF~~t------------~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~---g~~~iLVaTd~~~~Gi 151 (494)
.+.+||+.|. ..+++.|++.|+. +|.| .++-+++..+-.+++++|.+ ....++|+. +++-|.
T Consensus 9 ~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V-~~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~-~~sHG~ 86 (243)
T cd00032 9 RGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEV-EVKNNLTAEEILEELKEFASPDHSDSDSFVCV-ILSHGE 86 (243)
T ss_pred CCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEE-EEeCCCCHHHHHHHHHHHHhccCCCCCeeEEE-ECCCCC
Confidence 4566777663 4678999999986 6766 46889999999999998874 223333333 566675
Q ss_pred CCCCccEEEEeC-CCCCHhHHHHHhh
Q 011060 152 DIPNVDLIIHYE-LPNDPETFVHRSG 176 (494)
Q Consensus 152 dip~v~~VI~~~-~P~~~~~y~qr~G 176 (494)
. ++|+-.| -+.+.+.+++...
T Consensus 87 ~----~~l~~~D~~~v~l~~i~~~f~ 108 (243)
T cd00032 87 E----GGIYGTDGDVVPIDEITSLFN 108 (243)
T ss_pred C----CEEEEecCcEEEHHHHHHhhc
Confidence 4 6677666 5566777777664
No 330
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=30.61 E-value=3.5e+02 Score=25.66 Aligned_cols=83 Identities=12% Similarity=0.157 Sum_probs=56.6
Q ss_pred cCCeEEEEeCC-----------hHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCC----cEEEEEeccccccc
Q 011060 87 KGGKTIVFTQT-----------KRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG----KFTVLVATDVAARG 150 (494)
Q Consensus 87 ~~~~~iVF~~t-----------~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g----~~~iLVaTd~~~~G 150 (494)
+.+.+||+.|. ..+++.|++.|++ +|.| .++-+++..+-.+++++|.+. ..+++|+. +++-|
T Consensus 7 p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V-~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~-~~sHG 84 (241)
T smart00115 7 PRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEV-HVKNNLTAEEMLEELKEFAERPEHSDSDSFVCV-LLSHG 84 (241)
T ss_pred CCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHHhccccCCCCEEEEE-EcCCC
Confidence 34677888775 4589999999986 6766 468889999999999999763 23444444 66677
Q ss_pred CCCCCccEEEEeCC-CCCHhHHHHHh
Q 011060 151 LDIPNVDLIIHYEL-PNDPETFVHRS 175 (494)
Q Consensus 151 idip~v~~VI~~~~-P~~~~~y~qr~ 175 (494)
. .++|+-.|- +.+.+......
T Consensus 85 ~----~~~l~~~D~~~v~l~~i~~~f 106 (241)
T smart00115 85 E----EGGIYGTDHSPLPLDEIFSLF 106 (241)
T ss_pred C----CCeEEEecCCEEEHHHHHHhc
Confidence 3 356665554 44555555554
No 331
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=30.49 E-value=4.9e+02 Score=24.93 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=36.4
Q ss_pred EEEcCCccHHHHHHHHHHHHccCCeEEEEe-CChHHHHHHHHHHHc-cCcEEEEe
Q 011060 66 AISTTATSKRTILSDLITVYAKGGKTIVFT-QTKRDADEVSLALTS-IIASEALH 118 (494)
Q Consensus 66 ~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~-~t~~~~~~l~~~l~~-~~~~~~lh 118 (494)
.+.+...+|-++|..++.......+.|||+ .+.+.+..+.+.+.. .+...-+|
T Consensus 155 Ilft~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~ 209 (252)
T PF11019_consen 155 ILFTGGQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFH 209 (252)
T ss_pred eEEeCCCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEE
Confidence 345566788899999998876555566665 567777888777774 45444444
No 332
>PHA02653 RNA helicase NPH-II; Provisional
Probab=30.35 E-value=1.2e+02 Score=33.91 Aligned_cols=68 Identities=9% Similarity=-0.014 Sum_probs=44.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc--------cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEE
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS--------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~--------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~V 159 (494)
..+++|-+||++.|.+++..+.+ +..+...+|+++..... ...+ ...|||+|.-+. -.++..+++|
T Consensus 222 ~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~---t~~k--~~~Ilv~T~~L~-l~~L~~v~~V 295 (675)
T PHA02653 222 ERPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDELIN---TNPK--PYGLVFSTHKLT-LNKLFDYGTV 295 (675)
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcchHHhh---cccC--CCCEEEEeCccc-ccccccCCEE
Confidence 35899999999999988887753 23467789998742211 1112 457999985321 1256678887
Q ss_pred EE
Q 011060 160 IH 161 (494)
Q Consensus 160 I~ 161 (494)
|.
T Consensus 296 VI 297 (675)
T PHA02653 296 II 297 (675)
T ss_pred Ec
Confidence 74
No 333
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=29.46 E-value=1.2e+02 Score=24.46 Aligned_cols=45 Identities=9% Similarity=0.079 Sum_probs=31.6
Q ss_pred HHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCc-EEEEeCCCC
Q 011060 78 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (494)
Q Consensus 78 l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~~ 122 (494)
+...+..+..+.+++|+|.+-..+...+..|.. ++. +..+.|++.
T Consensus 48 l~~~~~~~~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T PRK00162 48 LGAFMRQADFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFE 94 (108)
T ss_pred HHHHHHhcCCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHH
Confidence 334444455677899999887777777777764 554 778888863
No 334
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=29.28 E-value=1.6e+02 Score=34.11 Aligned_cols=70 Identities=16% Similarity=0.142 Sum_probs=53.2
Q ss_pred cEEEEEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCC--CC-------ce-EEEecChhhHHHHHHHHHHh
Q 011060 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG--KE-------GT-AILMFTSSQRRTVRSLERDV 206 (494)
Q Consensus 137 ~~~iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g--~~-------g~-~i~l~~~~e~~~~~~l~~~~ 206 (494)
..+.|++-+++..|.|.|+|-.++-..-..+...-.|.+||.-|.- .. .. -.++++..+..+.+.|++.+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 5789999999999999999999998888888889999999988832 11 12 22345555666666666655
No 335
>PF02445 NadA: Quinolinate synthetase A protein; InterPro: IPR003473 Quinolinate synthetase catalyzes the second step of the de novo biosynthetic pathway of pyridine nucleotide formation. In particular, quinolinate synthetase is involved in the condensation of dihydroxyacetone phosphate and iminoaspartate to form quinolinic acid []. This synthesis requires two enzymes, an FAD-containing "B protein" and an "A protein".; GO: 0008987 quinolinate synthetase A activity, 0009435 NAD biosynthetic process; PDB: 2QS0_A 1WZU_A.
Probab=29.23 E-value=4.2e+02 Score=26.14 Aligned_cols=167 Identities=16% Similarity=0.238 Sum_probs=72.3
Q ss_pred hHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcc
Q 011060 32 SWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI 111 (494)
Q Consensus 32 ~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~ 111 (494)
..+..+.++| .+...|.++...... .. +--+++...+-.. +++.+ +..+-|+|+|-+.....+.+.+.+.
T Consensus 89 ~~v~~~k~~~-p~~~vV~YVNssAev-KA---~sdi~cTSsNA~k----Iv~~l-~~~~~IlF~PD~nLG~~v~~~~~k~ 158 (296)
T PF02445_consen 89 EDVRELKEEY-PDAAVVTYVNSSAEV-KA---ESDICCTSSNAVK----IVRSL-PQDKKILFLPDKNLGRYVARQTGKN 158 (296)
T ss_dssp HHHHHHHHHS-TTS-EEEESSS-HHH-HT---T-SEEE-TTTHHH----HHHCS-S-SE-EEEES-HHHHHHHHHHH--E
T ss_pred HHHHHHHHHC-CCCeEEEEecChHHH-Hc---cCCeEEECccHHH----HHHHh-cCCCeEEEcCcHHHHHHHHHhhCCe
Confidence 4455555555 455556655322111 11 1112333333333 34433 4456699999999999998888542
Q ss_pred ----CcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEEeCCCCC----------HhHHHHHhhc
Q 011060 112 ----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPND----------PETFVHRSGR 177 (494)
Q Consensus 112 ----~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~~~~P~~----------~~~y~qr~GR 177 (494)
-....+|-.++.++-..+.++ .|++.+++|-..|.. .+..+..+-.
T Consensus 159 ii~w~G~C~VH~~f~~~~i~~~r~~--------------------~P~a~vlvHPEC~~ev~~~AD~vGSTs~ii~~v~~ 218 (296)
T PF02445_consen 159 IILWPGYCPVHERFTPEDIEKAREK--------------------HPDAKVLVHPECPPEVVELADFVGSTSGIIKYVKE 218 (296)
T ss_dssp EEESSSS--TGGG--HHHHHHHHCC--------------------STTSEEEE-TTS-HHHHCT-SEE--HHHHHHHCCG
T ss_pred EEEECCCcccccccCHHHHHHHHHH--------------------CcCCEEEECCCCCHHHHHHhhhcCCHHHHHHHHHh
Confidence 235667888877765555443 366677777555542 3333333311
Q ss_pred cCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccCCC---ChHHHHHHHHHHHHHHhccC
Q 011060 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP---VVEDVLESSAEQVVATLNGV 236 (494)
Q Consensus 178 ~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p---~~~~~~~~~~~~~~~~l~~~ 236 (494)
. +...+++.+ |...+.+|.+...-+ +.+.++ .=..+....++.+...|+..
T Consensus 219 ---~--~~~~~iIgT--E~gl~~~L~~~~p~k-~f~~~~~~~~C~~Mk~~tl~~l~~~L~~~ 272 (296)
T PF02445_consen 219 ---S--PAKEFIIGT--EIGLVHRLKKENPDK-EFIPLSPCAICPNMKKITLEKLLDALENL 272 (296)
T ss_dssp ------S--EEEEES---CHHHHHHHHH-TTS-EEEETTTTSSSTT-----HHHHHHHHHHT
T ss_pred ---C--CCCeEEEEe--cchHHHHHHHHCCCc-EEEeCCCCCcCcCccccCHHHHHHHHhcC
Confidence 1 222444444 445677777665432 112211 12334444555555555543
No 336
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=29.15 E-value=75 Score=26.44 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=29.3
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc-cC--cEEEEeCCC
Q 011060 86 AKGGKTIVFTQTKRDADEVSLALTS-II--ASEALHGDI 121 (494)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~-~~--~~~~lhg~~ 121 (494)
.++.+++|||.+-..+...+..|.. ++ .+..+.|++
T Consensus 70 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~ 108 (122)
T cd01526 70 DKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGL 108 (122)
T ss_pred CCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchH
Confidence 3567899999997778888888875 67 588899998
No 337
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=28.75 E-value=7.6e+02 Score=26.54 Aligned_cols=223 Identities=17% Similarity=0.166 Sum_probs=111.5
Q ss_pred EEEEeCChHHHHHHHHHHHc---cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEEeCCCCC
Q 011060 91 TIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPND 167 (494)
Q Consensus 91 ~iVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~~~~P~~ 167 (494)
-|||++|.-.+=+.+..+-+ ++.+. +|- ..+-..++..|....++.||-||-. |=+-+.|.- |--..+|-.
T Consensus 115 PIvYTPTvG~acq~y~~i~r~p~Glfis-i~D---~Ghi~~~l~nWp~~~V~~IvVTDGe-rILGLGDlG-~~GmgIpvg 188 (582)
T KOG1257|consen 115 PIVYTPTVGLACQQYGLIFRRPQGLFIS-IKD---KGHIKQVLKNWPERNVKAIVVTDGE-RILGLGDLG-VNGMGIPVG 188 (582)
T ss_pred CeeecCcHHHHHHHhhhhhccCceeEEE-ecc---cchHHHHHHhCCccceeEEEEeCCC-ceecccccc-cCcccceec
Confidence 39999999888777766643 22222 221 1455778889988899999999831 111111111 001223322
Q ss_pred -HhHHHHHhhccCcCCCCceEEEecCh--hhHHHHHHHHHHhcCCccccCCCChHHHHHHHHHHHHHHhccCCccchhhh
Q 011060 168 -PETFVHRSGRTGRAGKEGTAILMFTS--SQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFF 244 (494)
Q Consensus 168 -~~~y~qr~GR~gR~g~~g~~i~l~~~--~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 244 (494)
...|.-..|= ++..|+-++.+ .+...+.+-.-+++...+++.-+...+.++..++.+....-...--..+.|
T Consensus 189 KL~Lyta~~GI-----~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av~~~yG~~~lIqFEDF 263 (582)
T KOG1257|consen 189 KLALYTALGGI-----RPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAVVQRYGPNTLIQFEDF 263 (582)
T ss_pred HHHHHHHhcCC-----ChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHHHHHHhCcceEEEehhc
Confidence 2333332221 34444443321 222334444456677777777777777777777776666522111112222
Q ss_pred -HHHHHHHHhhhCH--------------HHHHHHHHHHcCCCCCCCCcccccCCCCceEEEeecCcccccCCCChhHHHH
Q 011060 245 -TPTAQRLIEEKGT--------------DALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMG 309 (494)
Q Consensus 245 -~~~~~~l~~~~~~--------------~~l~~al~~l~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 309 (494)
...|-+++++... -+++..|+.+. .. .+.| ...+-+++..+. +.-++. .-++-
T Consensus 264 ~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~r-it----~~~l----sd~~ilf~GAG~--A~~GIA-~l~v~ 331 (582)
T KOG1257|consen 264 ANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALR-IT----GKPL----SDHVILFLGAGE--AALGIA-NLIVM 331 (582)
T ss_pred cchhHHHHHHHhccccceecccccchhHHHHHHHHHHHH-Hh----CCcc----ccceEEEecCch--HHhhHH-HHHHH
Confidence 2336677776432 23343333332 11 1111 234567777765 222222 22233
Q ss_pred HhhhhcCCCcCccccEEEeecCceeeEEee
Q 011060 310 FLSDVYPTAADEIGKIHIIADDRVQGAVFD 339 (494)
Q Consensus 310 ~i~~~~~~~~~~ig~i~i~~~~~~~gs~fd 339 (494)
.+.+..-...+.-.+|.++|.. |.++.
T Consensus 332 ~m~~~Gl~~eeA~kkIwlvD~~---GLi~~ 358 (582)
T KOG1257|consen 332 AMVKEGLSEEEARKKIWLVDSK---GLITK 358 (582)
T ss_pred HHHHcCCCHHHHhccEEEEecC---ceeec
Confidence 3444433334557888888764 44443
No 338
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=28.33 E-value=1.1e+02 Score=31.94 Aligned_cols=9 Identities=22% Similarity=0.298 Sum_probs=4.8
Q ss_pred EEEEecccc
Q 011060 139 TVLVATDVA 147 (494)
Q Consensus 139 ~iLVaTd~~ 147 (494)
...|.+|++
T Consensus 122 ~yfVlNDiF 130 (419)
T KOG0116|consen 122 GYFVLNDIF 130 (419)
T ss_pred ceEEEechh
Confidence 455555554
No 339
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=28.05 E-value=1.5e+02 Score=22.89 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=34.6
Q ss_pred EEEEeCChHHHHHHHHHHHccCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccc
Q 011060 91 TIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (494)
Q Consensus 91 ~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~ 147 (494)
.+|.+..+.++..|.+..-+ ..+...+|.....+..+.+.+. .-.|+|+||--
T Consensus 3 ~vIiVEG~~D~~~l~~~g~~-~~~i~t~Gt~~~~~~~~~l~~~---~~~VIiltD~D 55 (81)
T cd01027 3 EVIIVEGKNDTESLKKLGIE-AEIIETNGSIINKETIELIKKA---YRGVIILTDPD 55 (81)
T ss_pred eEEEEEchHHHHHHHHhCCC-ccEEEECCCcCCHHHHHHHHHh---CCEEEEEECCC
Confidence 46778888888887776532 3566666665554555555555 45688888843
No 340
>PRK01415 hypothetical protein; Validated
Probab=27.89 E-value=83 Score=30.22 Aligned_cols=38 Identities=24% Similarity=0.172 Sum_probs=31.1
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc-cCc-EEEEeCCCCH
Q 011060 86 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDISQ 123 (494)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~~~ 123 (494)
.++.++++||.+=..++..+..|.+ ++. +..|.|++..
T Consensus 169 ~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~ 208 (247)
T PRK01415 169 LKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQ 208 (247)
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHH
Confidence 4668999999998889999988875 664 8889999743
No 341
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=27.86 E-value=1.3e+02 Score=24.58 Aligned_cols=45 Identities=20% Similarity=0.135 Sum_probs=30.4
Q ss_pred HHHHHHHHH--ccCCeEEEEeCChHHHHHHHHHHHc-cC-cEEEEeCCC
Q 011060 77 ILSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDI 121 (494)
Q Consensus 77 ~l~~ll~~~--~~~~~~iVF~~t~~~~~~l~~~l~~-~~-~~~~lhg~~ 121 (494)
.+..++... .++.++||||++-..+..++..|.. ++ .+..|.|++
T Consensus 65 ~~~~~~~~~~~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~ 113 (118)
T cd01449 65 ELRALFAALGITPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSW 113 (118)
T ss_pred HHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChH
Confidence 344444433 2567899999997777777777764 66 467777775
No 342
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=27.59 E-value=1.1e+02 Score=25.62 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=27.8
Q ss_pred HccCCeEEEEeC-ChHHHHHHHHHHHc-cCcEEEEeCCCC
Q 011060 85 YAKGGKTIVFTQ-TKRDADEVSLALTS-IIASEALHGDIS 122 (494)
Q Consensus 85 ~~~~~~~iVF~~-t~~~~~~l~~~l~~-~~~~~~lhg~~~ 122 (494)
+.++.++||||. +-..+..++..|+. ++.+..|.|++.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~ 122 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYK 122 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHH
Confidence 345679999996 44556666677764 788889999974
No 343
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=27.52 E-value=92 Score=24.55 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=28.0
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc-cC-cEEEEeCCC
Q 011060 86 AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDI 121 (494)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~-~~-~~~~lhg~~ 121 (494)
.++.+++|||++-..+...+..|.+ ++ .+..++|++
T Consensus 52 ~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~ 89 (99)
T cd01527 52 VGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGL 89 (99)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCH
Confidence 4567999999998777788888874 45 577788886
No 344
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=26.84 E-value=1.3e+02 Score=26.39 Aligned_cols=35 Identities=20% Similarity=0.345 Sum_probs=26.1
Q ss_pred HHHHHHHH-HHccCCeEEEEeCChHHHHHHHHHHHc
Q 011060 76 TILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTS 110 (494)
Q Consensus 76 ~~l~~ll~-~~~~~~~~iVF~~t~~~~~~l~~~l~~ 110 (494)
.+|.++++ .+.+..++||..+|+-.++++++.|+.
T Consensus 20 ~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~ 55 (148)
T PF07652_consen 20 RVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKG 55 (148)
T ss_dssp THHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTT
T ss_pred cccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhc
Confidence 34555554 456778999999999999999999974
No 345
>PHA02558 uvsW UvsW helicase; Provisional
Probab=26.38 E-value=3.1e+02 Score=29.26 Aligned_cols=80 Identities=15% Similarity=0.119 Sum_probs=46.0
Q ss_pred CccHHHHHHHHHHHH-ccC-CeEEEEeCChHHHHHHHHHHHcc-----CcEEEEeCCCCHHHHHHHHhhccCCcEEEEEe
Q 011060 71 ATSKRTILSDLITVY-AKG-GKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVA 143 (494)
Q Consensus 71 ~~~k~~~l~~ll~~~-~~~-~~~iVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVa 143 (494)
-.-|..+...+...+ ... .++||+++|++.++++++.|.+. ..+..+.++.... ....|+|+
T Consensus 139 GsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-----------~~~~I~Va 207 (501)
T PHA02558 139 SAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-----------TDAPIVVS 207 (501)
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-----------CCCCEEEe
Confidence 345655444443322 223 38999999999999999988752 1233344442211 24579999
Q ss_pred cc-ccc-cc-CCCCCccEEEE
Q 011060 144 TD-VAA-RG-LDIPNVDLIIH 161 (494)
Q Consensus 144 Td-~~~-~G-idip~v~~VI~ 161 (494)
|. .+. .. ..+.++++||.
T Consensus 208 T~qsl~~~~~~~~~~~~~iIv 228 (501)
T PHA02558 208 TWQSAVKQPKEWFDQFGMVIV 228 (501)
T ss_pred eHHHHhhchhhhccccCEEEE
Confidence 93 222 11 13557777773
No 346
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=26.24 E-value=2.1e+02 Score=32.25 Aligned_cols=61 Identities=8% Similarity=0.076 Sum_probs=41.0
Q ss_pred HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCC-----CCHHHHHHHHhhccCCcEEEEEeccc
Q 011060 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGD-----ISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 79 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~-----~~~~~R~~~~~~F~~g~~~iLVaTd~ 146 (494)
..++..+ .+..++|.++++..|.+.++.+.. ++.+...+++ +.+++|..+. ..+|+++|+-
T Consensus 103 pa~l~aL-~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y------~~dIvygTp~ 173 (762)
T TIGR03714 103 PLYLNAL-TGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIY------NSDIVYTTNS 173 (762)
T ss_pred HHHHHhh-cCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHhC------CCCEEEECch
Confidence 3334433 456899999999999988887753 4566665553 5555555442 3689999973
No 347
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=26.07 E-value=2.3e+02 Score=26.92 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCc
Q 011060 74 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIA 113 (494)
Q Consensus 74 k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~ 113 (494)
..+.|...+..+.+.++-|.+..+....+.+.+.|.. ++.
T Consensus 108 ~~~~l~~~l~~~~~~~~~vl~~~~~~~r~~l~~~L~~~G~~ 148 (248)
T COG1587 108 DSEGLLEELPELLKGGKRVLILRGNGGREVLEEKLEERGAE 148 (248)
T ss_pred chHHHHHHhhhhccCCCeEEEEcCCCchHHHHHHHHhCCCE
Confidence 3334444444443333445555555555677777764 443
No 348
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=25.76 E-value=97 Score=24.29 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=25.9
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCC
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDI 121 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~ 121 (494)
+.++|+||.+-..+...+..|.. ++.+..|.|++
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~ 90 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQMGWEVYVLEGGL 90 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcH
Confidence 56899999986666677777764 67777788886
No 349
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=25.66 E-value=1.4e+02 Score=24.70 Aligned_cols=37 Identities=5% Similarity=0.015 Sum_probs=27.7
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc-cCc-EEEEeCCCC
Q 011060 86 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (494)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~~ 122 (494)
.+..++||||.+-..+...+..|.. ++. +..+.+++.
T Consensus 62 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~ 100 (117)
T cd01522 62 GKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFE 100 (117)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCcee
Confidence 4667899999997778888888875 554 666777764
No 350
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=25.40 E-value=3.3e+02 Score=26.26 Aligned_cols=68 Identities=13% Similarity=0.201 Sum_probs=42.8
Q ss_pred cHHHHHHHHHHHHccCCeEEEEe-CChHHHHHHHHHHHcc---CcEEEEe-CCCCHHHHHHHHhhccCCcEEE
Q 011060 73 SKRTILSDLITVYAKGGKTIVFT-QTKRDADEVSLALTSI---IASEALH-GDISQHQRERTLNGFRQGKFTV 140 (494)
Q Consensus 73 ~k~~~l~~ll~~~~~~~~~iVF~-~t~~~~~~l~~~l~~~---~~~~~lh-g~~~~~~R~~~~~~F~~g~~~i 140 (494)
.-.++...|++.....+.-|.|. .+...+++.+..|++. +.+...| |-.++.+.+.++++...-+.+|
T Consensus 92 ~G~Dl~~~Ll~~a~~~~~~vfllGgkp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~s~pdi 164 (253)
T COG1922 92 AGTDLVEALLKRAAEEGKRVFLLGGKPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAASGPDI 164 (253)
T ss_pred ChHHHHHHHHHHhCccCceEEEecCCHHHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHhcCCCE
Confidence 34566677777665554555555 4555666777778764 4455555 7777777778888877655433
No 351
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=25.11 E-value=1e+02 Score=35.33 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=44.2
Q ss_pred HHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHccCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc
Q 011060 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 76 ~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd 145 (494)
.++..+++.....++-||.+|+-..+....+.-.-.-.+..+...=++++|.......+.++++||++|-
T Consensus 432 sLitYLmE~K~~~GP~LvivPlstL~NW~~Ef~kWaPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTty 501 (1157)
T KOG0386|consen 432 SLITYLMEHKQMQGPFLIIVPLSTLVNWSSEFPKWAPSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTY 501 (1157)
T ss_pred HHHHHHHHHcccCCCeEEeccccccCCchhhccccccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeH
Confidence 3444444444456788888887654443332211111233333444589999999999999999999995
No 352
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=25.09 E-value=1.3e+02 Score=22.71 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=27.8
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc-c-CcEEEEeCCC
Q 011060 86 AKGGKTIVFTQTKRDADEVSLALTS-I-IASEALHGDI 121 (494)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~-~-~~~~~lhg~~ 121 (494)
.+..++||||.....+..++..|.. + ..+..|-|++
T Consensus 48 ~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~ 85 (89)
T cd00158 48 DKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGM 85 (89)
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCCh
Confidence 4568999999998888888888885 3 4566777765
No 353
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=24.94 E-value=3.1e+02 Score=26.20 Aligned_cols=64 Identities=9% Similarity=0.105 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHccC-CeEEEEeCChHHHHHHHHHHHcc--CcEE-EEeCCCCHHHHHHHHhhccCCc
Q 011060 74 KRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSI--IASE-ALHGDISQHQRERTLNGFRQGK 137 (494)
Q Consensus 74 k~~~l~~ll~~~~~~-~~~iVF~~t~~~~~~l~~~l~~~--~~~~-~lhg~~~~~~R~~~~~~F~~g~ 137 (494)
-.+++..+++..... .++-++=.+...++.+++.|++. +.+. .+||-..+++.+.+++..+...
T Consensus 90 G~dl~~~ll~~~~~~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s~ 157 (243)
T PRK03692 90 GADLWEALMARAGKEGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHASG 157 (243)
T ss_pred hHHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhcC
Confidence 345666666654333 45555556667788888888753 4444 4567676777677777766543
No 354
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=24.72 E-value=4.5e+02 Score=24.54 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=38.7
Q ss_pred cHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhc
Q 011060 73 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGF 133 (494)
Q Consensus 73 ~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F 133 (494)
-..+.+..+.....+-..+.||+|.. .+++.+.+.. .+.+.-|||+.+++.-+++-...
T Consensus 38 Vs~~~a~~i~~~v~~~~~VgVf~n~~--~~~i~~i~~~~~ld~VQlHG~e~~~~~~~l~~~~ 97 (208)
T COG0135 38 VSPEQAREIASAVPKVKVVGVFVNES--IEEILEIAEELGLDAVQLHGDEDPEYIDQLKEEL 97 (208)
T ss_pred CCHHHHHHHHHhCCCCCEEEEECCCC--HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhc
Confidence 34455666666553235788998753 3344444443 57899999999998877666655
No 355
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=24.59 E-value=3.1e+02 Score=31.54 Aligned_cols=65 Identities=9% Similarity=0.002 Sum_probs=48.3
Q ss_pred HHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccc
Q 011060 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (494)
Q Consensus 76 ~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~ 147 (494)
.+|..++..+ .+..+-|.++|.-.|..=++.+.. ++.+..+.+++++++|..++. .+|+++|...
T Consensus 112 A~l~a~l~al-~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~------~dI~YGT~~e 181 (913)
T PRK13103 112 GTLAVYLNAL-SGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA------ADITYGTNNE 181 (913)
T ss_pred HHHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc------CCEEEEcccc
Confidence 3444444444 568888999997777766666553 578899999999999998886 6888888753
No 356
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=24.40 E-value=3.2e+02 Score=26.59 Aligned_cols=57 Identities=19% Similarity=0.324 Sum_probs=41.9
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc--cCcEEEEeCCCCHHH-HHHHHhhccCC--cEEEEEe
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQ-RERTLNGFRQG--KFTVLVA 143 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~-R~~~~~~F~~g--~~~iLVa 143 (494)
++..+|+...+++..++|++.|.+ ...+.++--|++..+ ..++.+..+.. .++|||-
T Consensus 29 ~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~~IdvLVN 90 (265)
T COG0300 29 RGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGGPIDVLVN 90 (265)
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCCcccEEEE
Confidence 567899999999999999999986 457788888887654 45555555543 4555553
No 357
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=23.94 E-value=1.5e+02 Score=24.33 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=26.3
Q ss_pred cCCeEEEEeCC-hHHHHHHHHHHHc-cCc-EEEEeCCCC
Q 011060 87 KGGKTIVFTQT-KRDADEVSLALTS-IIA-SEALHGDIS 122 (494)
Q Consensus 87 ~~~~~iVF~~t-~~~~~~l~~~l~~-~~~-~~~lhg~~~ 122 (494)
++.++||||.+ -..+..++..|.. ++. +..|.|++.
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~ 116 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQ 116 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 56789999988 4667777777764 554 778888863
No 358
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=23.92 E-value=1.2e+02 Score=23.62 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=25.2
Q ss_pred cCCeEEEEeCC--hHHHHHHHHHHHc-cC-cEEEEeCCCC
Q 011060 87 KGGKTIVFTQT--KRDADEVSLALTS-II-ASEALHGDIS 122 (494)
Q Consensus 87 ~~~~~iVF~~t--~~~~~~l~~~l~~-~~-~~~~lhg~~~ 122 (494)
++.++||||.+ +..+...+..|.. ++ .+..+.|+|.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 36789999998 4446666777764 44 5777888763
No 359
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=23.88 E-value=1.1e+02 Score=25.60 Aligned_cols=37 Identities=11% Similarity=0.345 Sum_probs=28.7
Q ss_pred HHHHhhccCCcEEEEEecccccccCCCC------CccEEEEeC
Q 011060 127 ERTLNGFRQGKFTVLVATDVAARGLDIP------NVDLIIHYE 163 (494)
Q Consensus 127 ~~~~~~F~~g~~~iLVaTd~~~~Gidip------~v~~VI~~~ 163 (494)
.++++++.+|++.+.|-|.--.-+||++ .-.+||+||
T Consensus 64 ~emi~~l~~geIel~VLttqpDIai~l~~kVldnEnRYViDFD 106 (144)
T PF10657_consen 64 PEMIDKLISGEIELFVLTTQPDIAINLQQKVLDNENRYVIDFD 106 (144)
T ss_pred HHHHHHHhcCceEEEEEccCCCeeechhhhhhcccceEEEecc
Confidence 4577888899999999887777777774 235799888
No 360
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=23.44 E-value=88 Score=29.11 Aligned_cols=126 Identities=16% Similarity=0.228 Sum_probs=59.7
Q ss_pred HHHHHHHHhCC-CCCcEEEEeecCChHHHHHHHHHc---------CCCcEEEeccccccccc--cceEEEEEEcCCccHH
Q 011060 8 EDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYL---------DNPLNIDLVGNQDEKLA--EGIKLYAISTTATSKR 75 (494)
Q Consensus 8 ~~l~~Il~~~~-~~~q~il~SAT~~~~v~~~~~~~~---------~~~~~v~~~~~~~~~~~--~~i~~~~~~~~~~~k~ 75 (494)
..++..++.++ .+...|+|+. +..++.+.+.+. .+.. +-.++....... ..+...++......-
T Consensus 29 ~~l~~~l~~l~~~~~d~viftS--~~av~~~~~~l~~~~~~~~~~~~~~-i~avG~~Ta~~l~~~G~~~~~~~~~~~~s- 104 (231)
T PF02602_consen 29 ASLEAALEQLPPGNYDWVIFTS--PNAVRAFFKALQSAGADLRLLKNIK-IFAVGPKTAEALREYGFQPDFVPSSEGSS- 104 (231)
T ss_dssp HHHHHHHHHHTGCCSSEEEESS--HHHHHHHHHHHHHTTHHHHHHHHSE-EEESSHHHHHHHHHTT-EECEE-TTSSSH-
T ss_pred HHHHHHHHhcccCCCCEEEEEC--HHHHHHHHHHHhhhhhhhhhccCCe-EEEEcHHHHHHHHHcCCCccccCCCCCCH-
Confidence 44566666664 3566666633 445555444332 2222 223332221111 123332232212233
Q ss_pred HHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cC---cEEEEeCCCCHHHHHHHHhhccCCcEE
Q 011060 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-II---ASEALHGDISQHQRERTLNGFRQGKFT 139 (494)
Q Consensus 76 ~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~---~~~~lhg~~~~~~R~~~~~~F~~g~~~ 139 (494)
+.|..++.....+.++|+++.... -..|.+.|++ ++ .+.+|.- .+........+.|..+.+.
T Consensus 105 ~~L~~~l~~~~~~~~vl~~~g~~~-~~~l~~~L~~~g~~v~~~~vY~~-~~~~~~~~~~~~l~~~~~~ 170 (231)
T PF02602_consen 105 EGLAELLKEQLRGKRVLILRGEGG-RPDLPEKLREAGIEVTEVIVYET-PPEELSPELKEALDRGEID 170 (231)
T ss_dssp HHHHGGHHHCCTTEEEEEEESSSS-CHHHHHHHHHTTEEEEEEECEEE-EEHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHhhCCCCeEEEEcCCCc-cHHHHHHHHHCCCeEEEEEEeec-ccccchHHHHHHHHcCCCC
Confidence 333444443334456666665433 5567777753 43 3444555 6667777788887765543
No 361
>PF08095 Toxin_25: Hefutoxin family; InterPro: IPR012630 This family consists of the hefutoxins that are found in the venom of the scorpion Heterometrus fulvipes (Indian black scorpion). These toxins, kappa-hefutoxin1 and kappa-hefutoxin2, exhibit no homology to any known toxins. The hefutoxins are potassium channel toxins [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1HP9_A.
Probab=23.43 E-value=8.2 Score=21.41 Aligned_cols=15 Identities=40% Similarity=1.192 Sum_probs=9.0
Q ss_pred ccc-cCCCCccccCCC
Q 011060 478 ACF-NCGKSGHRASEC 492 (494)
Q Consensus 478 ~c~-~c~~~gh~~~~c 492 (494)
+|| +|-+.||=-.-|
T Consensus 3 ~cyrscwk~g~deetc 18 (22)
T PF08095_consen 3 GCYRSCWKAGHDEETC 18 (22)
T ss_dssp -TTTHHHHHHS-TTHH
T ss_pred chHHHHHHccCcHHHH
Confidence 488 688888854433
No 362
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=23.31 E-value=8.4e+02 Score=26.91 Aligned_cols=121 Identities=19% Similarity=0.216 Sum_probs=62.7
Q ss_pred EEEeecC--ChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHHHHHHcc--CCeEEEEeCChH
Q 011060 24 MLFSATM--PSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK--GGKTIVFTQTKR 99 (494)
Q Consensus 24 il~SAT~--~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~--~~~~iVF~~t~~ 99 (494)
+-++||. |.+|.+++..++.+...+......-. .+. .......+.-.+.+.+++..+.+ ...+.|.|+|-.
T Consensus 592 v~l~~syrSt~eI~efan~~l~d~~~~~p~~rsge-~p~----~i~~~~ne~l~qr~~~ii~~mkk~~~etiaVi~kt~~ 666 (747)
T COG3973 592 VGLIASYRSTAEIDEFANSLLPDRFRIHPLTRSGE-KPA----VIMSVANEELVQRNPDIIPRMKKRGSETIAVICKTDH 666 (747)
T ss_pred hhhhhhhcChHHHHHHHHHhccCCCccchhhcCCC-Cce----eeeccchHHHHHhhHHHHHHHHhcCCCceEEECCcHH
Confidence 3344443 56777788888774222211100000 111 11112222233334444444432 357789999999
Q ss_pred HHHHHHHHHHccCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEEeCC
Q 011060 100 DADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 164 (494)
Q Consensus 100 ~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~~~~ 164 (494)
+|..+...|+..- ++..-.+.-+.|..+..-+.| -.+.||-+ ++||.||+
T Consensus 667 d~~~~~d~lre~~---------~~r~I~k~nq~f~~~~~vipv---y~aKGlEF---D~viv~d~ 716 (747)
T COG3973 667 DCKAVMDSLREKD---------SQRTIAKENQRFHHGSDVIPV---YDAKGLEF---DHVIVVDP 716 (747)
T ss_pred HHHHHHHHHhhcc---------hhhHHHhhcccccCCceEEEe---eeccccee---eeEEEecc
Confidence 9999999997422 122223334456555533322 34678876 67887775
No 363
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=22.65 E-value=2.3e+02 Score=29.10 Aligned_cols=59 Identities=17% Similarity=0.281 Sum_probs=44.8
Q ss_pred CCeEEEE---eCChHHHHHHHHHHHc----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccc
Q 011060 88 GGKTIVF---TQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (494)
Q Consensus 88 ~~~~iVF---~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~ 147 (494)
+..+||+ +.|=.+....++.|++ .+.+.+.|+-++ ...+++.+.|.++.++-+|+||..
T Consensus 264 gr~vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~vf~-~a~~~l~~~~~~g~i~~iv~TdTi 329 (382)
T PRK06827 264 GKDVLIVDDMIASGGSMIDAAKELKSRGAKKIIVAATFGFFT-NGLEKFDKAYEEGYFDRIIGTNLV 329 (382)
T ss_pred CCEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEEEEeecCh-HHHHHHHhhcccCCCCEEEEeCCC
Confidence 4466666 4566667777777774 367888999998 777788888888888889999875
No 364
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=22.56 E-value=1e+02 Score=24.59 Aligned_cols=35 Identities=11% Similarity=0.060 Sum_probs=26.3
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-cCc-EEEEeCCC
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDI 121 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~ 121 (494)
++.++||||.+-..+...+..|.. ++. +..+.|++
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~ 101 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSW 101 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcH
Confidence 457899999997777777877774 553 66677776
No 365
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=22.20 E-value=2.5e+02 Score=27.14 Aligned_cols=58 Identities=12% Similarity=0.117 Sum_probs=39.0
Q ss_pred CCeEEEEeCChHHHHHHHHHHHccCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc
Q 011060 88 GGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd 145 (494)
..-+|.|++.....+.+...++.+..+.+-.-+++.++.+++.+.-+...+.++++.+
T Consensus 69 ~DvVIdfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~N 126 (266)
T TIGR00036 69 PDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPN 126 (266)
T ss_pred CCEEEECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECc
Confidence 3556777777777777777777777777655578888777777665554455555543
No 366
>PLN02160 thiosulfate sulfurtransferase
Probab=22.08 E-value=1.6e+02 Score=25.20 Aligned_cols=37 Identities=11% Similarity=0.002 Sum_probs=28.9
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc-cC-cEEEEeCCCC
Q 011060 86 AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 122 (494)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~-~~-~~~~lhg~~~ 122 (494)
.++.++|+||.+=..+...+..|.. ++ .+..|.|++.
T Consensus 79 ~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~ 117 (136)
T PLN02160 79 NPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYL 117 (136)
T ss_pred CCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHH
Confidence 4567899999998888888888875 66 4777788863
No 367
>KOG3293 consensus Small nuclear ribonucleoprotein (snRNP) [RNA processing and modification]
Probab=21.88 E-value=2.8e+02 Score=23.23 Aligned_cols=15 Identities=20% Similarity=0.534 Sum_probs=10.7
Q ss_pred EeecCHHHHHHHHhh
Q 011060 337 VFDLPEEIAKELLNK 351 (494)
Q Consensus 337 ~fdvp~~~a~~~~~~ 351 (494)
++.+|.+..+++-+-
T Consensus 68 ylri~d~iid~vkee 82 (134)
T KOG3293|consen 68 YLRIPDEIIDKVKEE 82 (134)
T ss_pred EEeccHHHHHHHHHH
Confidence 577888877776654
No 368
>COG5179 TAF1 Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=21.82 E-value=41 Score=36.11 Aligned_cols=17 Identities=47% Similarity=1.136 Sum_probs=14.1
Q ss_pred CccccCCCCcccc--CCCC
Q 011060 477 GACFNCGKSGHRA--SECP 493 (494)
Q Consensus 477 ~~c~~c~~~gh~~--~~cp 493 (494)
..|-+|||.|||. .-||
T Consensus 938 r~C~nCGQvGHmkTNK~CP 956 (968)
T COG5179 938 RTCGNCGQVGHMKTNKACP 956 (968)
T ss_pred eecccccccccccccccCc
Confidence 3699999999996 4577
No 369
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=21.81 E-value=5.6e+02 Score=25.13 Aligned_cols=63 Identities=11% Similarity=0.047 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHccC-cEEEEeCCCCHHHHHHHHhhccCCc
Q 011060 74 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII-ASEALHGDISQHQRERTLNGFRQGK 137 (494)
Q Consensus 74 k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~-~~~~lhg~~~~~~R~~~~~~F~~g~ 137 (494)
-++.+.+.++.. .-.-.|||++-...++.+.+.+...+ .+.++.-+.|..+-.++.+..+...
T Consensus 53 Vf~tV~EA~~~~-~a~~svI~Vp~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g 116 (293)
T COG0074 53 VFNTVEEAVKET-GANASVIFVPPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKG 116 (293)
T ss_pred HHHHHHHHHHhh-CCCEEEEecCcHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 345556666655 45688999999999999999998754 5778888999988888888777655
No 370
>PRK06739 pyruvate kinase; Validated
Probab=21.80 E-value=4.3e+02 Score=26.84 Aligned_cols=65 Identities=12% Similarity=0.098 Sum_probs=41.2
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc---------------------------CcEEEEeCCCC--------HHHHHHHHhh
Q 011060 88 GGKTIVFTQTKRDADEVSLALTSI---------------------------IASEALHGDIS--------QHQRERTLNG 132 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~---------------------------~~~~~lhg~~~--------~~~R~~~~~~ 132 (494)
+.=++=|+++.+++.++.+.|.+. -.+.+=-|+|. +..+.++++.
T Consensus 180 D~ia~SFVr~~~Dv~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~eI~~~sDgimVARGDLgve~~~e~vp~~Qk~Ii~~ 259 (352)
T PRK06739 180 DFIACSFVRKPSHIKEIRDFIQQYKETSPNLIAKIETMEAIENFQDICKEADGIMIARGDLGVELPYQFIPLLQKMMIQE 259 (352)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhcCEEEEECcccccccCHHHHHHHHHHHHHH
Confidence 344566777777777777766531 12223344432 3456777777
Q ss_pred ccCCcEEEEEecccccccCC
Q 011060 133 FRQGKFTVLVATDVAARGLD 152 (494)
Q Consensus 133 F~~g~~~iLVaTd~~~~Gid 152 (494)
-+.-...|++||++++.-+.
T Consensus 260 c~~~gkPvIvATqmLeSM~~ 279 (352)
T PRK06739 260 CNRTNTYVITATQMLQSMVD 279 (352)
T ss_pred HHHhCCCEEEEcchHHhhcc
Confidence 77777899999999876443
No 371
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=21.27 E-value=97 Score=20.12 Aligned_cols=16 Identities=38% Similarity=0.690 Sum_probs=13.4
Q ss_pred EEee-cCHHHHHHHHhh
Q 011060 336 AVFD-LPEEIAKELLNK 351 (494)
Q Consensus 336 s~fd-vp~~~a~~~~~~ 351 (494)
.+|| +|.+.+++|+.+
T Consensus 17 ~Vfd~v~~~Ka~~im~l 33 (36)
T PF06200_consen 17 CVFDDVPPDKAQEIMLL 33 (36)
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 5677 999999999875
No 372
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=21.26 E-value=3e+02 Score=22.25 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=20.9
Q ss_pred cCCeEEEEeC-Ch----HHHHHHHHHHH------ccCcEEEEeCCCC
Q 011060 87 KGGKTIVFTQ-TK----RDADEVSLALT------SIIASEALHGDIS 122 (494)
Q Consensus 87 ~~~~~iVF~~-t~----~~~~~l~~~l~------~~~~~~~lhg~~~ 122 (494)
++.+++|||. +- ..+..+.+.|. ....+..|.|++.
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~ 107 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFN 107 (113)
T ss_pred CCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHH
Confidence 4568899997 32 23334433332 1345888888864
No 373
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=21.06 E-value=3.5e+02 Score=21.44 Aligned_cols=61 Identities=21% Similarity=0.260 Sum_probs=35.4
Q ss_pred eEEEEeCChHH-----HHHHHHHHH-ccCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccC-CCCCcc
Q 011060 90 KTIVFTQTKRD-----ADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL-DIPNVD 157 (494)
Q Consensus 90 ~~iVF~~t~~~-----~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gi-dip~v~ 157 (494)
++|+.|.+=-. +..+.+.|. +++.+...|..+++-. ... ...+++|+|.-+..-+ |+|-+.
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~e~~--~~~-----~~~D~iv~t~~~~~~~~~ip~~~ 71 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIE--TYM-----DGVHLICTTARVDRSFGDIPLVH 71 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHHHHh--hhc-----CCCCEEEECCccccccCCCCEEE
Confidence 68888876332 344445554 3677888886654321 111 2467888887665555 466433
No 374
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=21.00 E-value=5.5e+02 Score=22.18 Aligned_cols=84 Identities=11% Similarity=0.046 Sum_probs=51.4
Q ss_pred HHHHHHHHHHc---cCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccC
Q 011060 76 TILSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 151 (494)
Q Consensus 76 ~~l~~ll~~~~---~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gi 151 (494)
..+..+++.+. .+.++.|+-.+....+.++..|.+ +..+...|..... -++ ..+ +.+|+|+.--...-+
T Consensus 13 ~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~-l~~----~v~--~ADIVvsAtg~~~~i 85 (140)
T cd05212 13 KAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQ-LQS----KVH--DADVVVVGSPKPEKV 85 (140)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcC-HHH----HHh--hCCEEEEecCCCCcc
Confidence 34455555552 467899999999999999999985 7888888876532 111 222 345555433222334
Q ss_pred CCCC---ccEEEEeCCCC
Q 011060 152 DIPN---VDLIIHYELPN 166 (494)
Q Consensus 152 dip~---v~~VI~~~~P~ 166 (494)
+-.. =.+||++++..
T Consensus 86 ~~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 86 PTEWIKPGATVINCSPTK 103 (140)
T ss_pred CHHHcCCCCEEEEcCCCc
Confidence 4322 24678777655
No 375
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=20.94 E-value=7.3e+02 Score=23.59 Aligned_cols=78 Identities=13% Similarity=0.245 Sum_probs=44.6
Q ss_pred cCCccHHHHHHHHHHHHc----cCCeEEEEeCChHHHHHHHHHHHc----cCcEEEEeCCCCHHHHHHHHhhccCCcEEE
Q 011060 69 TTATSKRTILSDLITVYA----KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTV 140 (494)
Q Consensus 69 ~~~~~k~~~l~~ll~~~~----~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~i 140 (494)
.+..+|.++...+++.+. ++..++|=-.+.+.++. .|.. ++.+.+ +.|+..+--+|++.+. .-++
T Consensus 134 TPr~nK~e~t~~ildi~~~~~l~~~lvvIDH~N~etv~~---vld~e~~vGlTvqP--gKlt~~eAveIV~ey~--~~r~ 206 (254)
T COG1099 134 TPRRNKKEATSKILDILIESGLKPSLVVIDHVNEETVDE---VLDEEFYVGLTVQP--GKLTVEEAVEIVREYG--AERI 206 (254)
T ss_pred CCCCcchhHHHHHHHHHHHcCCChhheehhcccHHHHHH---HHhccceEEEEecC--CcCCHHHHHHHHHHhC--cceE
Confidence 444555555555555442 22344444444444432 2332 233444 8999999999998876 4568
Q ss_pred EEecccccccCCC
Q 011060 141 LVATDVAARGLDI 153 (494)
Q Consensus 141 LVaTd~~~~Gidi 153 (494)
|+.+|+...--|+
T Consensus 207 ilnSD~~s~~sd~ 219 (254)
T COG1099 207 ILNSDAGSAASDP 219 (254)
T ss_pred EEecccccccccc
Confidence 8888876554443
No 376
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=20.65 E-value=1.3e+02 Score=23.78 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=26.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-cCc-EEEEeCCCC
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~~ 122 (494)
+.+++|||.+-..+..++..|.. ++. +..|.|++.
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 56899999887777777777774 554 778888863
No 377
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=20.59 E-value=3.1e+02 Score=31.49 Aligned_cols=63 Identities=11% Similarity=0.063 Sum_probs=45.7
Q ss_pred HHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc
Q 011060 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 77 ~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~ 146 (494)
+|..++..+ .+..+.|.+++...|...++.+.. ++.+.++.+++++.+|...+ ..+|+++|+-
T Consensus 113 ~lp~~l~al-~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r~~~Y------~~dI~YgT~~ 180 (908)
T PRK13107 113 TLPAYLNAL-TGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEKKAAY------NADITYGTNN 180 (908)
T ss_pred HHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHhcC------CCCeEEeCCC
Confidence 344445444 456799999999999888877763 57888899999986655443 4578888873
No 378
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=20.56 E-value=3.8e+02 Score=20.14 Aligned_cols=55 Identities=13% Similarity=0.176 Sum_probs=30.0
Q ss_pred eEEEEeCChH-HHHHHHHHHHccCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccccc
Q 011060 90 KTIVFTQTKR-DADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 148 (494)
Q Consensus 90 ~~iVF~~t~~-~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~ 148 (494)
+++|.|++-. ....++..|++.++-..+-.-.+..+ ++.....+++++|+|--+.
T Consensus 2 kilivC~~G~~~s~~l~~~l~~~~~~~~~v~~~~~~~----~~~~~~~~~DlIitT~~l~ 57 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLKKLFPEIEIIDVISLRE----LEEVDLDDYDLIISTVPLE 57 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHHHHCCCceEEEEEeHHH----HhhCcccCCCEEEEccccC
Confidence 5788887754 44466777776443222212222222 2222334678999997655
No 379
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=20.49 E-value=49 Score=34.61 Aligned_cols=16 Identities=50% Similarity=1.398 Sum_probs=15.3
Q ss_pred cccCCCCccccCCCCC
Q 011060 479 CFNCGKSGHRASECPN 494 (494)
Q Consensus 479 c~~c~~~gh~~~~cp~ 494 (494)
|-+||.+||..-|||.
T Consensus 264 c~~cg~~~H~q~~cp~ 279 (554)
T KOG0119|consen 264 CRNCGSTGHKQYDCPG 279 (554)
T ss_pred ccccCCCccccccCCc
Confidence 9999999999999995
No 380
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=20.47 E-value=1e+02 Score=24.32 Aligned_cols=36 Identities=8% Similarity=0.115 Sum_probs=26.2
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc-cCc-EEEEeCCC
Q 011060 86 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDI 121 (494)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~ 121 (494)
.++.+++|||.+-..+...+..|.. ++. +..|.|++
T Consensus 59 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~ 96 (103)
T cd01447 59 AEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGF 96 (103)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcH
Confidence 4567999999886667777777764 554 66777775
No 381
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=20.42 E-value=5.3e+02 Score=25.04 Aligned_cols=81 Identities=21% Similarity=0.318 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHccCCeEEEEeCCh-HHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccc-c
Q 011060 74 KRTILSDLITVYAKGGKTIVFTQTK-RDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR-G 150 (494)
Q Consensus 74 k~~~l~~ll~~~~~~~~~iVF~~t~-~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~-G 150 (494)
..++|.+.+..+...+.+|||.+.+ +.+++|++.+.- .-.-.++||.+.. +-.. .|+.+++|-.+...+ =
T Consensus 165 N~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~-----ir~~--~Gkk~~~ies~~s~eeL 237 (300)
T COG4152 165 NVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVED-----IRRS--FGKKRLVIESDLSLEEL 237 (300)
T ss_pred hHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHH-----HHHh--cCCceEEEeccCchHHH
Confidence 4567788777777789999999875 678888888752 2234567887522 1112 256677777665444 5
Q ss_pred CCCCCccEEEE
Q 011060 151 LDIPNVDLIIH 161 (494)
Q Consensus 151 idip~v~~VI~ 161 (494)
-++|.|..+..
T Consensus 238 ~~ipgi~~~~~ 248 (300)
T COG4152 238 ANIPGILKITE 248 (300)
T ss_pred hcCCCceeeee
Confidence 56666665554
No 382
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=20.22 E-value=1.1e+03 Score=25.50 Aligned_cols=46 Identities=24% Similarity=0.320 Sum_probs=30.4
Q ss_pred cEEEEeCCCCHHH--HHHHHhhccCCcEEEEEeccc--ccccCCCCCccE
Q 011060 113 ASEALHGDISQHQ--RERTLNGFRQGKFTVLVATDV--AARGLDIPNVDL 158 (494)
Q Consensus 113 ~~~~lhg~~~~~~--R~~~~~~F~~g~~~iLVaTd~--~~~Gidip~v~~ 158 (494)
.+..+||.+..-. |..++.+|++++..|-|.|.. -...++++...+
T Consensus 415 ~lilVHGE~neM~rLKs~L~~~f~d~kv~i~v~tprn~e~v~l~f~~ekl 464 (668)
T KOG1137|consen 415 HLILVHGEANEMMRLKSALEAAFRDGKVPIDVSTPRNCEDVELYFPGEKL 464 (668)
T ss_pred eEEEEecccchhHHHHHHHHHHhccCCCcceecCCccceEeeeecCcchh
Confidence 4566788776554 466788999999888888853 333444444443
No 383
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=20.20 E-value=49 Score=37.72 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=26.3
Q ss_pred EecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcC
Q 011060 142 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 181 (494)
Q Consensus 142 VaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~ 181 (494)
|.++...++..+..+...+.+++|.+| ..+++++-.+.
T Consensus 484 ikn~~s~~~~~l~~~~~~~~~~LtgTP--len~l~eL~sl 521 (866)
T COG0553 484 IKNDQSSEGKALQFLKALNRLDLTGTP--LENRLGELWSL 521 (866)
T ss_pred HhhhhhHHHHHHHHHhhcceeeCCCCh--HhhhHHHHHHH
Confidence 556666667777677777788888888 56666665443
Done!