Query 011060
Match_columns 494
No_of_seqs 525 out of 3301
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 19:58:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011060.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011060hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i32_A Heat resistant RNA depe 100.0 2.3E-44 7.8E-49 354.5 28.9 289 61-372 2-291 (300)
2 3eaq_A Heat resistant RNA depe 100.0 1.5E-34 5.3E-39 271.3 26.2 206 62-268 6-212 (212)
3 2db3_A ATP-dependent RNA helic 100.0 3.8E-33 1.3E-37 290.1 22.5 203 1-207 215-421 (434)
4 3sqw_A ATP-dependent RNA helic 100.0 6.5E-32 2.2E-36 290.9 23.0 216 1-216 187-420 (579)
5 2j0s_A ATP-dependent RNA helic 100.0 1.5E-31 5.1E-36 275.5 21.2 214 1-217 191-406 (410)
6 3i5x_A ATP-dependent RNA helic 100.0 2.6E-31 8.9E-36 285.3 22.0 214 1-214 238-469 (563)
7 2i4i_A ATP-dependent RNA helic 100.0 1.1E-30 3.7E-35 269.4 19.8 206 1-208 187-397 (417)
8 1s2m_A Putative ATP-dependent 100.0 4.8E-30 1.6E-34 263.2 24.0 211 2-216 176-387 (400)
9 3fht_A ATP-dependent RNA helic 100.0 9.2E-30 3.1E-34 261.7 24.2 215 4-221 184-407 (412)
10 3eiq_A Eukaryotic initiation f 100.0 1E-30 3.4E-35 269.2 17.0 213 1-216 195-409 (414)
11 1xti_A Probable ATP-dependent 100.0 2.5E-29 8.4E-34 256.9 24.3 211 4-216 168-380 (391)
12 3pey_A ATP-dependent RNA helic 100.0 6.2E-29 2.1E-33 253.7 25.5 216 4-222 161-386 (395)
13 2hjv_A ATP-dependent RNA helic 100.0 3.4E-29 1.2E-33 225.0 20.1 156 58-214 6-162 (163)
14 1hv8_A Putative ATP-dependent 100.0 3.5E-29 1.2E-33 253.0 22.2 205 2-214 160-365 (367)
15 2rb4_A ATP-dependent RNA helic 100.0 2.8E-29 9.7E-34 228.3 17.8 161 58-219 4-172 (175)
16 1t5i_A C_terminal domain of A 100.0 7.2E-29 2.5E-33 224.9 17.5 156 59-215 3-160 (172)
17 3fmp_B ATP-dependent RNA helic 100.0 1.1E-30 3.7E-35 275.0 5.1 214 4-220 251-473 (479)
18 2p6n_A ATP-dependent RNA helic 100.0 5.5E-29 1.9E-33 229.5 15.4 168 38-209 8-177 (191)
19 1fuk_A Eukaryotic initiation f 100.0 1.5E-28 5.1E-33 221.3 15.6 156 60-216 2-159 (165)
20 1fuu_A Yeast initiation factor 100.0 6.1E-30 2.1E-34 261.5 5.2 212 2-216 175-388 (394)
21 2jgn_A DBX, DDX3, ATP-dependen 100.0 2.3E-28 7.8E-33 224.3 14.4 154 57-210 15-169 (185)
22 2v1x_A ATP-dependent DNA helic 100.0 1.7E-27 5.8E-32 255.6 20.7 197 2-202 178-382 (591)
23 2z0m_A 337AA long hypothetical 99.9 4.5E-27 1.5E-31 234.9 18.0 194 2-207 142-335 (337)
24 3fho_A ATP-dependent RNA helic 99.9 8.6E-28 2.9E-32 254.6 9.6 214 4-220 275-497 (508)
25 1oyw_A RECQ helicase, ATP-depe 99.9 7.2E-26 2.4E-30 240.3 23.4 194 2-204 152-353 (523)
26 2yjt_D ATP-dependent RNA helic 99.9 1.7E-28 5.9E-33 222.0 0.0 154 61-215 3-158 (170)
27 3oiy_A Reverse gyrase helicase 99.9 2.2E-26 7.4E-31 237.5 15.1 193 1-212 161-383 (414)
28 1tf5_A Preprotein translocase 99.9 4.3E-26 1.5E-30 246.5 8.6 125 69-195 412-546 (844)
29 2xau_A PRE-mRNA-splicing facto 99.9 5.1E-25 1.7E-29 243.0 16.0 177 10-196 231-445 (773)
30 4ddu_A Reverse gyrase; topoiso 99.9 2.8E-24 9.7E-29 244.8 14.9 205 1-224 218-524 (1104)
31 2whx_A Serine protease/ntpase/ 99.9 8.8E-25 3E-29 235.4 7.6 179 2-206 289-493 (618)
32 3o8b_A HCV NS3 protease/helica 99.9 1.3E-23 4.3E-28 225.2 12.9 187 1-219 329-543 (666)
33 3l9o_A ATP-dependent RNA helic 99.9 1.1E-22 3.6E-27 231.9 21.2 199 1-203 302-607 (1108)
34 2p6r_A Afuhel308 helicase; pro 99.9 1.4E-22 4.9E-27 222.8 19.5 186 3-195 152-389 (702)
35 2fsf_A Preprotein translocase 99.9 1.2E-23 4.1E-28 227.0 9.5 127 67-195 419-584 (853)
36 1yks_A Genome polyprotein [con 99.9 2.4E-24 8.2E-29 223.9 3.3 177 4-206 113-314 (440)
37 2zj8_A DNA helicase, putative 99.9 3.5E-22 1.2E-26 220.3 20.7 199 2-213 151-404 (720)
38 1gku_B Reverse gyrase, TOP-RG; 99.9 1.1E-23 3.7E-28 239.9 7.6 207 6-225 190-488 (1054)
39 2xgj_A ATP-dependent RNA helic 99.9 1.5E-21 5.2E-26 220.5 24.2 198 1-202 204-508 (1010)
40 4a2p_A RIG-I, retinoic acid in 99.9 5E-22 1.7E-26 212.1 18.2 123 73-197 372-511 (556)
41 2d7d_A Uvrabc system protein B 99.9 8.9E-22 3.1E-26 213.9 20.3 174 19-202 385-564 (661)
42 2ykg_A Probable ATP-dependent 99.9 4.1E-23 1.4E-27 227.0 9.6 129 72-202 379-524 (696)
43 2va8_A SSO2462, SKI2-type heli 99.9 7.5E-22 2.6E-26 217.6 19.6 205 3-213 159-426 (715)
44 1nkt_A Preprotein translocase 99.9 6.6E-22 2.3E-26 213.7 18.0 126 69-196 440-619 (922)
45 2wv9_A Flavivirin protease NS2 99.9 3.7E-23 1.3E-27 224.3 6.4 175 6-206 348-548 (673)
46 1c4o_A DNA nucleotide excision 99.9 3.1E-21 1.1E-25 209.7 20.9 176 19-204 379-560 (664)
47 3jux_A Protein translocase sub 99.9 4.7E-21 1.6E-25 203.0 20.0 167 22-195 411-588 (822)
48 2z83_A Helicase/nucleoside tri 99.9 3.9E-23 1.3E-27 215.9 2.4 102 88-194 190-313 (459)
49 3tbk_A RIG-I helicase domain; 99.9 1.1E-21 3.6E-26 209.2 12.5 128 73-202 371-515 (555)
50 1wp9_A ATP-dependent RNA helic 99.9 4.1E-21 1.4E-25 200.3 16.6 122 73-195 343-476 (494)
51 2jlq_A Serine protease subunit 99.9 1.6E-21 5.6E-26 203.2 12.5 164 4-193 124-310 (451)
52 2eyq_A TRCF, transcription-rep 99.8 4.9E-21 1.7E-25 219.4 16.7 180 8-194 739-922 (1151)
53 4a4z_A Antiviral helicase SKI2 99.8 2E-20 7E-25 211.3 20.4 116 87-202 335-502 (997)
54 4a2q_A RIG-I, retinoic acid in 99.8 2.4E-20 8.1E-25 207.8 20.6 122 73-196 613-751 (797)
55 3rc3_A ATP-dependent RNA helic 99.8 1.3E-20 4.4E-25 203.9 15.6 191 1-212 251-462 (677)
56 4gl2_A Interferon-induced heli 99.8 6.4E-21 2.2E-25 209.5 12.7 103 88-193 400-517 (699)
57 3dmq_A RNA polymerase-associat 99.8 2.8E-20 9.4E-25 210.4 17.9 166 70-236 486-657 (968)
58 4a2w_A RIG-I, retinoic acid in 99.8 1.3E-19 4.5E-24 204.5 20.3 121 74-196 614-751 (936)
59 2v6i_A RNA helicase; membrane, 99.8 1.5E-20 5.3E-25 194.7 10.5 161 5-191 108-288 (431)
60 1gm5_A RECG; helicase, replica 99.8 1.1E-20 3.6E-25 207.6 8.5 171 18-194 514-697 (780)
61 4f92_B U5 small nuclear ribonu 99.8 6.6E-19 2.2E-23 207.7 20.6 187 13-202 1076-1316(1724)
62 2fwr_A DNA repair protein RAD2 99.8 3.3E-20 1.1E-24 194.5 3.1 117 72-193 334-453 (472)
63 1z5z_A Helicase of the SNF2/RA 99.8 7.9E-19 2.7E-23 170.2 11.4 124 70-193 93-223 (271)
64 2oca_A DAR protein, ATP-depend 99.8 1.1E-18 3.6E-23 184.8 12.6 184 8-192 240-453 (510)
65 4f92_B U5 small nuclear ribonu 99.8 2E-18 6.8E-23 203.6 13.8 184 15-202 239-481 (1724)
66 3h1t_A Type I site-specific re 99.8 5.8E-18 2E-22 182.4 15.2 101 82-183 433-545 (590)
67 1z63_A Helicase of the SNF2/RA 99.6 1E-15 3.5E-20 161.4 12.0 122 72-193 324-452 (500)
68 1z3i_X Similar to RAD54-like; 99.6 6.4E-15 2.2E-19 160.0 16.8 134 72-205 398-541 (644)
69 3mwy_W Chromo domain-containin 99.6 2.8E-14 9.6E-19 158.7 15.5 137 72-208 555-700 (800)
70 2w00_A HSDR, R.ECOR124I; ATP-b 99.5 2.4E-13 8.1E-18 153.3 18.3 134 88-223 537-738 (1038)
71 2e29_A ATP-dependent RNA helic 98.9 2.2E-09 7.7E-14 84.6 7.5 89 267-362 2-91 (92)
72 2a51_A Nucleocapsid protein; s 98.7 1.1E-08 3.7E-13 67.5 4.1 37 418-494 3-39 (39)
73 1cl4_A Protein (GAG polyprotei 98.7 4.9E-09 1.7E-13 76.4 2.4 47 416-494 2-48 (60)
74 1dsq_A Nucleic acid binding pr 98.7 5.6E-09 1.9E-13 62.1 2.0 18 477-494 3-20 (26)
75 2bl6_A Nucleocapsid protein P1 98.7 1.4E-08 4.8E-13 66.2 3.6 36 417-494 2-37 (37)
76 2ipc_A Preprotein translocase 98.6 1.7E-06 5.9E-11 94.0 20.1 167 22-195 380-699 (997)
77 1a6b_B Momulv, zinc finger pro 98.6 2.5E-08 8.6E-13 65.3 3.2 19 476-494 10-28 (40)
78 2ec7_A GAG polyprotein (PR55GA 98.6 4.2E-08 1.5E-12 68.1 3.8 39 416-494 7-45 (49)
79 2cqf_A RNA-binding protein LIN 98.6 7.6E-08 2.6E-12 70.6 5.3 40 416-494 8-47 (63)
80 2li8_A Protein LIN-28 homolog 98.5 7.7E-08 2.6E-12 72.8 4.9 16 479-494 49-64 (74)
81 2ihx_A Nucleocapsid (NC) prote 98.5 7.2E-08 2.5E-12 70.3 4.2 44 416-494 5-48 (61)
82 2vl7_A XPD; helicase, unknown 98.4 8.2E-07 2.8E-11 94.1 12.2 75 87-166 383-463 (540)
83 1a1t_A Nucleocapsid protein; s 98.4 7.5E-08 2.6E-12 68.8 2.8 39 416-494 13-51 (55)
84 1u6p_A GAG polyprotein; MLV, A 98.4 1.6E-07 5.3E-12 66.4 2.6 19 476-494 23-41 (56)
85 3nyb_B Protein AIR2; polya RNA 98.3 2E-07 6.7E-12 72.1 2.9 58 416-494 6-64 (83)
86 3ts2_A Protein LIN-28 homolog 98.3 2.7E-07 9.3E-12 79.9 3.4 40 416-494 98-137 (148)
87 2g0c_A ATP-dependent RNA helic 98.3 6.6E-07 2.3E-11 68.5 4.9 61 287-354 1-61 (76)
88 1nc8_A Nucleocapsid protein; H 98.3 2.2E-07 7.6E-12 56.7 1.3 18 477-494 7-24 (29)
89 2lli_A Protein AIR2; RNA surve 98.2 3.8E-06 1.3E-10 70.7 8.7 20 475-494 104-123 (124)
90 2ysa_A Retinoblastoma-binding 98.1 1E-06 3.6E-11 61.9 2.3 18 476-493 7-24 (55)
91 4a15_A XPD helicase, ATP-depen 97.9 0.00013 4.3E-09 78.5 15.1 77 87-166 447-527 (620)
92 2lli_A Protein AIR2; RNA surve 97.9 1.8E-05 6.1E-10 66.6 6.1 19 476-494 64-82 (124)
93 2a51_A Nucleocapsid protein; s 97.7 1.3E-05 4.3E-10 52.6 1.6 17 478-494 2-18 (39)
94 2bl6_A Nucleocapsid protein P1 97.6 1.6E-05 5.6E-10 51.4 1.7 17 478-494 2-18 (37)
95 3i31_A Heat resistant RNA depe 97.6 0.00012 4.2E-09 54.9 6.0 77 275-371 2-78 (88)
96 1wrb_A DJVLGB; RNA helicase, D 97.6 4.9E-05 1.7E-09 71.9 4.8 51 1-51 186-240 (253)
97 2ec7_A GAG polyprotein (PR55GA 97.5 2.8E-05 9.5E-10 53.7 1.7 18 477-494 7-24 (49)
98 2cqf_A RNA-binding protein LIN 97.4 6.7E-05 2.3E-09 54.8 2.9 18 477-494 8-25 (63)
99 3hgt_A HDA1 complex subunit 3; 97.4 0.0013 4.3E-08 64.1 12.6 120 71-195 107-238 (328)
100 2li8_A Protein LIN-28 homolog 97.4 9.7E-05 3.3E-09 55.6 3.7 17 478-494 26-42 (74)
101 2ihx_A Nucleocapsid (NC) prote 97.4 3.6E-05 1.2E-09 55.8 1.3 18 477-494 5-22 (61)
102 1a1t_A Nucleocapsid protein; s 97.3 6.2E-05 2.1E-09 53.4 1.3 18 477-494 13-30 (55)
103 3crv_A XPD/RAD3 related DNA he 97.2 0.0037 1.3E-07 66.1 14.1 75 87-166 392-473 (551)
104 3ts2_A Protein LIN-28 homolog 96.8 0.00037 1.3E-08 60.1 2.1 18 477-494 98-115 (148)
105 1gm5_A RECG; helicase, replica 95.8 0.026 8.9E-07 61.9 9.5 89 73-161 401-496 (780)
106 3oiy_A Reverse gyrase helicase 95.4 0.03 1E-06 56.5 8.0 80 82-161 58-145 (414)
107 4ddu_A Reverse gyrase; topoiso 94.1 0.074 2.5E-06 60.7 7.5 88 73-161 105-202 (1104)
108 2eyq_A TRCF, transcription-rep 93.5 0.2 7E-06 57.4 9.8 89 73-161 636-731 (1151)
109 3fe2_A Probable ATP-dependent 92.1 0.72 2.5E-05 42.4 9.9 70 88-161 102-182 (242)
110 1dsq_A Nucleic acid binding pr 91.5 0.11 3.8E-06 30.2 2.2 19 416-434 3-21 (26)
111 1wrb_A DJVLGB; RNA helicase, D 91.4 1.2 4.2E-05 41.0 10.7 69 89-161 101-180 (253)
112 3iuy_A Probable ATP-dependent 90.8 0.74 2.5E-05 41.8 8.4 71 87-161 93-173 (228)
113 1t6n_A Probable ATP-dependent 90.7 1.2 4E-05 40.1 9.7 70 89-161 83-164 (220)
114 2v1x_A ATP-dependent DNA helic 90.4 0.61 2.1E-05 49.5 8.3 59 87-145 83-144 (591)
115 1oyw_A RECQ helicase, ATP-depe 89.8 0.65 2.2E-05 48.4 7.9 74 87-160 64-144 (523)
116 3ber_A Probable ATP-dependent 89.4 1.5 5.1E-05 40.6 9.4 70 88-161 111-192 (249)
117 2gxq_A Heat resistant RNA depe 89.2 0.91 3.1E-05 40.3 7.5 70 88-161 72-150 (207)
118 2oxc_A Probable ATP-dependent 88.9 0.83 2.8E-05 41.7 7.1 85 72-161 72-172 (230)
119 2hqh_E Restin; beta/BETA struc 88.1 0.13 4.4E-06 29.4 0.5 16 479-494 6-21 (26)
120 3ly5_A ATP-dependent RNA helic 87.7 2.4 8.4E-05 39.4 9.7 71 87-161 125-207 (262)
121 1vec_A ATP-dependent RNA helic 87.5 1.5 5E-05 38.9 7.6 70 88-161 71-152 (206)
122 2db3_A ATP-dependent RNA helic 86.4 1.6 5.5E-05 44.1 8.1 70 88-161 129-209 (434)
123 1a6b_B Momulv, zinc finger pro 86.3 0.39 1.3E-05 31.1 2.1 20 416-435 11-30 (40)
124 1xti_A Probable ATP-dependent 86.3 2.8 9.6E-05 41.0 9.7 71 88-161 76-158 (391)
125 2pl3_A Probable ATP-dependent 86.2 2.6 9E-05 38.2 8.8 70 87-161 96-177 (236)
126 1qde_A EIF4A, translation init 86.0 2.5 8.5E-05 38.0 8.5 85 72-161 62-161 (224)
127 1gku_B Reverse gyrase, TOP-RG; 85.5 0.94 3.2E-05 51.5 6.3 75 85-161 96-181 (1054)
128 3bor_A Human initiation factor 84.9 1.4 4.6E-05 40.4 6.2 72 87-161 97-179 (237)
129 4a2p_A RIG-I, retinoic acid in 84.9 1.8 6.1E-05 44.8 7.7 70 88-161 55-136 (556)
130 3nyb_B Protein AIR2; polya RNA 84.6 0.22 7.6E-06 38.0 0.4 15 479-493 27-41 (83)
131 2i4i_A ATP-dependent RNA helic 83.7 2.6 8.8E-05 41.8 8.1 69 89-161 102-181 (417)
132 1wp9_A ATP-dependent RNA helic 83.2 3.5 0.00012 41.3 9.0 70 87-161 51-131 (494)
133 3tbk_A RIG-I helicase domain; 82.3 1.8 6.2E-05 44.6 6.5 70 88-161 52-133 (555)
134 2z0m_A 337AA long hypothetical 81.7 4.7 0.00016 38.3 8.9 70 87-161 55-135 (337)
135 4a2q_A RIG-I, retinoic acid in 81.6 2.8 9.6E-05 46.0 8.0 70 88-161 296-377 (797)
136 1q0u_A Bstdead; DEAD protein, 80.2 1.7 5.8E-05 39.1 4.8 70 88-161 72-156 (219)
137 1u6p_A GAG polyprotein; MLV, A 79.8 0.81 2.8E-05 32.0 1.8 20 416-435 24-43 (56)
138 1fuu_A Yeast initiation factor 79.5 3.7 0.00013 40.1 7.4 70 87-161 88-168 (394)
139 1hv8_A Putative ATP-dependent 79.3 7.7 0.00026 37.2 9.6 69 88-161 74-153 (367)
140 2j0s_A ATP-dependent RNA helic 78.2 7 0.00024 38.5 9.1 71 87-161 104-185 (410)
141 1s2m_A Putative ATP-dependent 76.3 8.6 0.00029 37.7 9.0 70 88-161 89-169 (400)
142 3dkp_A Probable ATP-dependent 75.6 6 0.0002 36.0 7.1 87 72-161 77-181 (245)
143 3eiq_A Eukaryotic initiation f 73.8 4.7 0.00016 39.7 6.3 86 73-161 89-189 (414)
144 4a2w_A RIG-I, retinoic acid in 71.4 4 0.00014 45.7 5.6 70 88-161 296-377 (936)
145 2pk2_A Cyclin-T1, protein TAT; 70.8 0.86 2.9E-05 45.0 0.0 10 256-265 192-201 (358)
146 3fmp_B ATP-dependent RNA helic 70.8 4.3 0.00015 41.3 5.3 65 90-161 164-241 (479)
147 2ysa_A Retinoblastoma-binding 70.7 2.4 8.3E-05 29.4 2.3 18 416-433 8-25 (55)
148 1h2v_Z 20 kDa nuclear CAP bind 69.5 20 0.0007 29.9 8.6 60 285-353 38-102 (156)
149 3b6e_A Interferon-induced heli 69.4 4 0.00014 36.1 4.2 54 88-145 82-140 (216)
150 3fmo_B ATP-dependent RNA helic 69.2 5.1 0.00017 38.1 5.1 66 89-161 163-241 (300)
151 2ykg_A Probable ATP-dependent 69.1 6.1 0.00021 42.2 6.3 69 89-161 62-142 (696)
152 3pgw_S U1-70K; protein-RNA com 68.7 90 0.0031 31.2 14.5 35 285-328 101-135 (437)
153 2pzo_E CAP-Gly domain-containi 68.6 1.3 4.6E-05 28.3 0.5 16 479-494 23-38 (42)
154 1tf5_A Preprotein translocase 67.2 9.7 0.00033 41.6 7.2 69 87-161 123-209 (844)
155 2fsf_A Preprotein translocase 66.8 9.6 0.00033 41.7 7.1 69 87-161 114-200 (853)
156 3l9o_A ATP-dependent RNA helic 65.6 7.6 0.00026 44.2 6.4 70 81-161 220-296 (1108)
157 1cl4_A Protein (GAG polyprotei 61.9 6.6 0.00023 27.5 3.2 20 416-435 31-50 (60)
158 1nkt_A Preprotein translocase 61.8 15 0.0005 40.5 7.3 58 81-145 146-208 (922)
159 2zj8_A DNA helicase, putative 61.7 8.6 0.00029 41.5 5.7 68 87-161 67-144 (720)
160 2ipc_A Preprotein translocase 60.1 14 0.00047 40.8 6.7 54 87-146 119-177 (997)
161 3gk5_A Uncharacterized rhodane 59.9 7.3 0.00025 30.7 3.6 44 79-122 46-90 (108)
162 3dmn_A Putative DNA helicase; 59.4 73 0.0025 27.1 10.4 62 88-164 61-123 (174)
163 2p6r_A Afuhel308 helicase; pro 59.3 9.9 0.00034 40.8 5.6 76 79-161 59-144 (702)
164 3i5x_A ATP-dependent RNA helic 59.0 4.4 0.00015 42.2 2.7 70 89-161 147-232 (563)
165 3sqw_A ATP-dependent RNA helic 58.4 4.5 0.00015 42.4 2.7 70 89-161 96-181 (579)
166 3g5j_A Putative ATP/GTP bindin 57.2 13 0.00046 29.9 5.0 41 82-122 82-125 (134)
167 4gl2_A Interferon-induced heli 56.0 4 0.00014 43.7 1.8 69 89-161 57-142 (699)
168 1gmx_A GLPE protein; transfera 53.6 14 0.00049 28.8 4.4 45 78-122 48-94 (108)
169 3e2u_E CAP-Gly domain-containi 52.6 3.9 0.00013 26.3 0.5 16 479-494 23-38 (42)
170 2jtq_A Phage shock protein E; 52.0 33 0.0011 25.1 6.1 43 78-121 29-75 (85)
171 2oca_A DAR protein, ATP-depend 51.6 15 0.00052 37.4 5.3 67 88-161 157-231 (510)
172 2xgj_A ATP-dependent RNA helic 51.2 22 0.00075 40.0 6.8 69 82-161 123-198 (1010)
173 3q2s_C Cleavage and polyadenyl 51.1 26 0.00088 31.7 6.2 62 285-353 67-133 (229)
174 3hix_A ALR3790 protein; rhodan 50.5 15 0.0005 28.7 3.9 40 82-121 46-87 (106)
175 3o8b_A HCV NS3 protease/helica 48.2 31 0.0011 36.8 7.1 64 87-161 256-324 (666)
176 2fz4_A DNA repair protein RAD2 48.2 29 0.001 31.4 6.2 60 71-145 118-179 (237)
177 1c4o_A DNA nucleotide excision 47.7 95 0.0032 32.9 10.9 83 67-151 34-144 (664)
178 2va8_A SSO2462, SKI2-type heli 47.0 15 0.00052 39.4 4.6 83 72-161 57-151 (715)
179 1tq1_A AT5G66040, senescence-a 46.4 11 0.00038 30.6 2.7 43 80-122 74-118 (129)
180 3flh_A Uncharacterized protein 45.6 11 0.00039 30.3 2.6 44 78-121 61-107 (124)
181 4a4z_A Antiviral helicase SKI2 43.2 31 0.0011 38.7 6.5 51 84-145 78-131 (997)
182 2fwr_A DNA repair protein RAD2 43.1 30 0.001 34.7 5.9 58 73-145 120-179 (472)
183 3pey_A ATP-dependent RNA helic 42.9 60 0.002 31.1 7.9 67 87-161 74-151 (395)
184 3fht_A ATP-dependent RNA helic 42.8 26 0.00088 34.1 5.2 83 72-161 75-174 (412)
185 3hjh_A Transcription-repair-co 40.8 1.4E+02 0.0047 30.4 10.4 111 65-177 18-147 (483)
186 3iwh_A Rhodanese-like domain p 40.6 12 0.00042 29.2 1.9 38 84-121 52-90 (103)
187 1rif_A DAR protein, DNA helica 40.6 34 0.0011 31.7 5.4 51 88-145 157-212 (282)
188 3foj_A Uncharacterized protein 40.0 22 0.00076 27.2 3.4 37 85-121 53-90 (100)
189 3eme_A Rhodanese-like domain p 39.1 20 0.00069 27.6 3.0 37 85-121 53-90 (103)
190 2d7d_A Uvrabc system protein B 37.8 2.4E+02 0.0082 29.7 12.2 108 67-176 38-177 (661)
191 1wv9_A Rhodanese homolog TT165 36.2 34 0.0012 25.7 3.9 36 86-122 52-88 (94)
192 2k0z_A Uncharacterized protein 34.9 58 0.002 25.3 5.2 37 85-121 53-90 (110)
193 2q5c_A NTRC family transcripti 34.4 2.3E+02 0.0079 24.6 10.5 125 88-223 4-133 (196)
194 2fsx_A RV0390, COG0607: rhodan 33.5 45 0.0016 27.5 4.6 37 86-122 78-116 (148)
195 3fho_A ATP-dependent RNA helic 32.3 56 0.0019 33.3 5.9 81 73-161 170-265 (508)
196 1vee_A Proline-rich protein fa 31.2 57 0.002 26.4 4.7 37 86-122 72-110 (134)
197 1qys_A TOP7; alpha-beta, novel 30.2 1.6E+02 0.0055 21.5 6.4 51 60-110 15-69 (106)
198 2fcj_A Small toprim domain pro 29.9 1.1E+02 0.0039 24.5 6.1 54 90-145 5-58 (119)
199 2hhg_A Hypothetical protein RP 29.3 41 0.0014 27.3 3.5 36 86-121 84-121 (139)
200 3nhv_A BH2092 protein; alpha-b 27.6 43 0.0015 27.7 3.4 38 85-122 69-109 (144)
201 2pju_A Propionate catabolism o 25.9 2.7E+02 0.0093 24.9 8.7 131 7-144 25-161 (225)
202 3mb5_A SAM-dependent methyltra 24.8 2.9E+02 0.0099 24.4 9.0 40 71-110 170-209 (255)
203 3ilm_A ALR3790 protein; rhodan 24.6 46 0.0016 27.4 3.0 37 85-121 53-91 (141)
204 3mwy_W Chromo domain-containin 24.4 1.3E+02 0.0043 32.7 7.3 59 86-145 284-353 (800)
205 4fn4_A Short chain dehydrogena 24.1 1.9E+02 0.0066 26.3 7.5 56 87-144 30-91 (254)
206 1vp8_A Hypothetical protein AF 23.9 3E+02 0.01 24.2 8.0 70 73-147 27-108 (201)
207 1qxn_A SUD, sulfide dehydrogen 23.9 51 0.0018 26.9 3.1 37 85-121 79-117 (137)
208 3sxu_A DNA polymerase III subu 23.5 1.5E+02 0.0052 24.7 6.0 76 74-164 24-104 (150)
209 2dgu_A Heterogeneous nuclear r 23.0 2.4E+02 0.0081 21.0 10.5 53 286-351 11-64 (103)
210 3d1p_A Putative thiosulfate su 21.8 58 0.002 26.4 3.1 35 87-121 90-126 (139)
211 2pju_A Propionate catabolism o 21.6 4.3E+02 0.015 23.5 12.0 126 89-223 13-145 (225)
212 3bbn_B Ribosomal protein S2; s 21.4 84 0.0029 28.5 4.2 31 79-109 54-84 (231)
213 1uar_A Rhodanese; sulfurtransf 20.2 90 0.0031 28.8 4.4 44 78-121 221-269 (285)
No 1
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=2.3e-44 Score=354.47 Aligned_cols=289 Identities=38% Similarity=0.587 Sum_probs=251.8
Q ss_pred ceEEEEEEcCCccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEE
Q 011060 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFT 139 (494)
Q Consensus 61 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~ 139 (494)
.+.|+++.++...|.++|.++++... ..++||||+|++.++.+++.|.. ++.+..+||+|++.+|+.+++.|++|+++
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~ 80 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR 80 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce
Confidence 36788999999999999999998774 78999999999999999999975 79999999999999999999999999999
Q ss_pred EEEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccCCCChH
Q 011060 140 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 219 (494)
Q Consensus 140 iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~ 219 (494)
|||||+++++|||+|++++||+|++|++.++|+||+|||||.|++|.|++|+++.+...++.+++.++.+++.+.+|+.+
T Consensus 81 vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~~ 160 (300)
T 3i32_A 81 VLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPE 160 (300)
T ss_dssp EEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCHH
T ss_pred EEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCceEEEeecCccccc
Q 011060 220 DVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSR 299 (494)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~ 299 (494)
++.+.....++..+..+....+..|.+.+++++++..++.+++||+.+.+... .++++++..++|++++++.++ .
T Consensus 161 ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laaal~~l~~~~~--~~~~l~~~~~~~~~~~~~~g~---~ 235 (300)
T 3i32_A 161 EVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGGAP--AERSLLTGEEGWRTYKATGPR---L 235 (300)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHHHHHHHHTCCC--CCBCTTTCCBSCBCEEEECTT---C
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCc--CccccccCCCCcEEEEEecCC---C
Confidence 99999999999999988888889999999999999999999999999988765 678898889999999999987 3
Q ss_pred CCCChhHHHHHhhhhcCCCcCccccEEEeecCceeeEEeecCHHHHHHHHhhcCCCCCceEeeccCCCCCCCC
Q 011060 300 GFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDG 372 (494)
Q Consensus 300 ~~~~~~~i~~~i~~~~~~~~~~ig~i~i~~~~~~~gs~fdvp~~~a~~~~~~~~~~~~~i~~~~~lP~l~~~~ 372 (494)
.. |++++ .|.+. +. +||+|++++++ +|||||++.++ ...+++++++++||++++..
T Consensus 236 ~~--~~~~~-~i~~~-~~---~ig~i~~~~~~----~~~dvp~~~~~------~~~~~~~~~~~~~p~~~~~~ 291 (300)
T 3i32_A 236 SL--PRLVA-LLKGQ-GL---EVGKVAEAEGG----FYVDLRPEARP------EVAGLRLEPARRVEGLLEIP 291 (300)
T ss_dssp CH--HHHHH-HHHHT-TC---CCCCEEEETTE----EEECBCSSCCC------CCTTCEEEEC----------
T ss_pred CC--cHHHH-HHHhc-CC---eECcEEEeCCE----EEEEeCHHHcC------cCCCcEEEecccCCCCccCC
Confidence 33 99997 56554 33 89999998775 89999999887 34679999999999999864
No 2
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=100.00 E-value=1.5e-34 Score=271.33 Aligned_cols=206 Identities=44% Similarity=0.704 Sum_probs=192.4
Q ss_pred eEEEEEEcCCccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEE
Q 011060 62 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTV 140 (494)
Q Consensus 62 i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~i 140 (494)
+.+.++.++...|..+|.++++.. ...++||||+|++.++.+++.|.. ++.+..+||+|++++|++++++|++|+.+|
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 84 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRV 84 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCE
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeE
Confidence 345677788889999999999866 568999999999999999999985 899999999999999999999999999999
Q ss_pred EEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccCCCChHH
Q 011060 141 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED 220 (494)
Q Consensus 141 LVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~ 220 (494)
||||+++++|||+|++++||+|++|++++.|+||+|||||.|++|.|++|+++.+...++.+++.++.+++.+.+|..++
T Consensus 85 lvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~e 164 (212)
T 3eaq_A 85 LVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEE 164 (212)
T ss_dssp EEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCHHH
T ss_pred EEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHc
Q 011060 221 VLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 268 (494)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l~ 268 (494)
+.+.....++..+..........|.+.+++++++++++++++||++|+
T Consensus 165 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~ll 212 (212)
T 3eaq_A 165 VLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLL 212 (212)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHHHHHhhC
Confidence 999999999999999887777899999999999999999999999873
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.8e-33 Score=290.12 Aligned_cols=203 Identities=34% Similarity=0.583 Sum_probs=179.0
Q ss_pred CCcCCHHHHHHHHHHhC--CCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHH
Q 011060 1 MLAVGFEEDVELILENL--PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~--~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l 78 (494)
|+++||.+++..|+..+ ++++|+++||||+|+++..++..++.++..+.+.. .......+.+.+..+....|...|
T Consensus 215 ~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~--~~~~~~~i~~~~~~~~~~~k~~~l 292 (434)
T 2db3_A 215 MLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGI--VGGACSDVKQTIYEVNKYAKRSKL 292 (434)
T ss_dssp HTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESS--TTCCCTTEEEEEEECCGGGHHHHH
T ss_pred hhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecc--ccccccccceEEEEeCcHHHHHHH
Confidence 68999999999999985 67899999999999999999999999988776542 233456778888888888888888
Q ss_pred HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCcc
Q 011060 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 79 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~ 157 (494)
.+++... ..++||||+|++.++.+++.|.+ ++.+..+||++++.+|++++++|++|+.+|||||+++++|||+|+|+
T Consensus 293 ~~~l~~~--~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~ 370 (434)
T 2db3_A 293 IEILSEQ--ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIK 370 (434)
T ss_dssp HHHHHHC--CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCC
T ss_pred HHHHHhC--CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCC
Confidence 8888764 34599999999999999999985 79999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChh-hHHHHHHHHHHhc
Q 011060 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVG 207 (494)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~-e~~~~~~l~~~~~ 207 (494)
+||+||+|.+.++|+||+|||||.|+.|.+++|+++. +...++.|.+.+.
T Consensus 371 ~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~ 421 (434)
T 2db3_A 371 HVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILE 421 (434)
T ss_dssp EEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999954 4555566655543
No 4
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=6.5e-32 Score=290.88 Aligned_cols=216 Identities=27% Similarity=0.412 Sum_probs=180.6
Q ss_pred CCcCCHHHHHHHHHHhCC-------CCCcEEEEeecCChHHHHHHHHHcCCCcEEEecc--ccccccccceEEEEEEcCC
Q 011060 1 MLAVGFEEDVELILENLP-------PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVG--NQDEKLAEGIKLYAISTTA 71 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~-------~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~~~~~~~~~ 71 (494)
|+++||.++++.|+..++ ++.|+++||||+|+.+..++..++.++..+.+.. .........+.+.++....
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 266 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 266 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecc
Confidence 578999999999998764 3779999999999999999999998877665432 2223334556665555443
Q ss_pred c--cHHHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHc----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEE
Q 011060 72 T--SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLV 142 (494)
Q Consensus 72 ~--~k~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLV 142 (494)
. .+...+..+...+ ....++||||+|++.++.+++.|.+ .+.+..+||+|++.+|.+++++|++++.+|||
T Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLV 346 (579)
T 3sqw_A 267 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 346 (579)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEE
Confidence 2 2333444443333 3467999999999999999999984 68899999999999999999999999999999
Q ss_pred ecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccCCC
Q 011060 143 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (494)
Q Consensus 143 aTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (494)
||+++++|||+|+|++||+|++|.+++.|+||+|||||.|+.|.|++|+++.|...++.|++.....+.....+
T Consensus 347 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~~~ 420 (579)
T 3sqw_A 347 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKY 420 (579)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEEEE
T ss_pred EcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998888765433
No 5
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.98 E-value=1.5e-31 Score=275.48 Aligned_cols=214 Identities=35% Similarity=0.601 Sum_probs=190.9
Q ss_pred CCcCCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCc-cHHHHHH
Q 011060 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT-SKRTILS 79 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~ 79 (494)
|++++|...+..|++.++++.|+++||||+|..+.+++..++.+|..+.+. ........+.+++...... .+...|.
T Consensus 191 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~k~~~l~ 268 (410)
T 2j0s_A 191 MLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVK--RDELTLEGIKQFFVAVEREEWKFDTLC 268 (410)
T ss_dssp HTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCC--GGGCSCTTEEEEEEEESSTTHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEec--CccccCCCceEEEEEeCcHHhHHHHHH
Confidence 568899999999999999999999999999999999988899888776543 2233445667766666554 4888888
Q ss_pred HHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccE
Q 011060 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (494)
Q Consensus 80 ~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~ 158 (494)
.++... ...++||||++++.++.+++.|.. ++.+..+||+|++++|.+++++|++++.+|||||+++++|||+|++++
T Consensus 269 ~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~ 347 (410)
T 2j0s_A 269 DLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 347 (410)
T ss_dssp HHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEE
T ss_pred HHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCE
Confidence 888776 457999999999999999999985 789999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccCCCC
Q 011060 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV 217 (494)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~ 217 (494)
||+|++|++...|+||+||+||.|++|.+++|+++.+...++.++++++.++++++.+.
T Consensus 348 Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (410)
T 2j0s_A 348 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNV 406 (410)
T ss_dssp EEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSCC
T ss_pred EEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccch
Confidence 99999999999999999999999999999999999999999999999999998876553
No 6
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.97 E-value=2.6e-31 Score=285.26 Aligned_cols=214 Identities=27% Similarity=0.423 Sum_probs=178.6
Q ss_pred CCcCCHHHHHHHHHHhCC-------CCCcEEEEeecCChHHHHHHHHHcCCCcEEEecc--ccccccccceEEEEEEcCC
Q 011060 1 MLAVGFEEDVELILENLP-------PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVG--NQDEKLAEGIKLYAISTTA 71 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~-------~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~~~~~~~~~ 71 (494)
|+++||.++++.|+..++ ++.|+++||||+|+.+..++..++.++..+.+.. .........+.+.++....
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 578999999999988763 3789999999999999999999998877654432 2223334455555555443
Q ss_pred c-cH-HHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHc----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEE
Q 011060 72 T-SK-RTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLV 142 (494)
Q Consensus 72 ~-~k-~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLV 142 (494)
. .+ ...+..+...+ ....++||||+|++.++.+++.|.+ .+.+..+||+|++.+|.++++.|++++.+|||
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 2 22 23333333332 4567999999999999999999984 68899999999999999999999999999999
Q ss_pred ecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccC
Q 011060 143 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (494)
Q Consensus 143 aTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (494)
||+++++|||+|+|++||+|++|.++++|+||+|||||.|+.|.+++|+.+.+...++.|++.....++...
T Consensus 398 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~ 469 (563)
T 3i5x_A 398 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQE 469 (563)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEE
T ss_pred EcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999888887654
No 7
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.97 E-value=1.1e-30 Score=269.37 Aligned_cols=206 Identities=39% Similarity=0.597 Sum_probs=179.7
Q ss_pred CCcCCHHHHHHHHHHh--CCC--CCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHH
Q 011060 1 MLAVGFEEDVELILEN--LPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT 76 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~--~~~--~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~ 76 (494)
|++++|..++..|+.. ++. ..|+++||||+|..+..++..++.++..+.+.. .......+.+.++.+....+..
T Consensus 187 ~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~ 264 (417)
T 2i4i_A 187 MLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR--VGSTSENITQKVVWVEESDKRS 264 (417)
T ss_dssp HHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC------CCSSEEEEEEECCGGGHHH
T ss_pred hhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCC--CCCCccCceEEEEEeccHhHHH
Confidence 3567899999999985 443 689999999999999999999999887765532 2334567788888888888999
Q ss_pred HHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCC
Q 011060 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN 155 (494)
Q Consensus 77 ~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~ 155 (494)
.|.++++......++||||+|++.++.+++.|.+ ++.+..+||+|++++|.+++++|++++.+|||||+++++|||+|+
T Consensus 265 ~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~ 344 (417)
T 2i4i_A 265 FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISN 344 (417)
T ss_dssp HHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCC
T ss_pred HHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCccc
Confidence 9999888766678999999999999999999985 789999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcC
Q 011060 156 VDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 208 (494)
Q Consensus 156 v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~ 208 (494)
+++||+|++|.+...|+||+||+||.|++|.+++|+++.+...++.+.+.+..
T Consensus 345 v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 397 (417)
T 2i4i_A 345 VKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVE 397 (417)
T ss_dssp EEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHH
T ss_pred CCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888888776643
No 8
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.97 E-value=4.8e-30 Score=263.25 Aligned_cols=211 Identities=31% Similarity=0.530 Sum_probs=190.6
Q ss_pred CcCCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHH
Q 011060 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 81 (494)
Q Consensus 2 L~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l 81 (494)
++.+|...++.|+..+++..|+++||||+|..+......++.++..+.+.. ......+.+++.......|...+..+
T Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~k~~~l~~~ 252 (400)
T 1s2m_A 176 LSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME---ELTLKGITQYYAFVEERQKLHCLNTL 252 (400)
T ss_dssp SSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS---SCBCTTEEEEEEECCGGGHHHHHHHH
T ss_pred hhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc---ccccCCceeEEEEechhhHHHHHHHH
Confidence 456788999999999999999999999999999999999998887765432 23445677788878888888888888
Q ss_pred HHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEE
Q 011060 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (494)
Q Consensus 82 l~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI 160 (494)
++.. ...++||||++++.++.+++.|.. ++.+..+||+|++++|.++++.|++++.+|||||+++++|+|+|++++||
T Consensus 253 ~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi 331 (400)
T 1s2m_A 253 FSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVI 331 (400)
T ss_dssp HHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEE
T ss_pred Hhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEE
Confidence 8765 557999999999999999999985 78999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccCCC
Q 011060 161 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (494)
Q Consensus 161 ~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (494)
+|++|+++..|+||+||+||.|++|.|++|+++.+...++.+++.++.+++.++..
T Consensus 332 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 387 (400)
T 1s2m_A 332 NFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPAT 387 (400)
T ss_dssp ESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSS
T ss_pred EeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccccccc
Confidence 99999999999999999999999999999999999999999999999998877644
No 9
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.97 E-value=9.2e-30 Score=261.73 Aligned_cols=215 Identities=31% Similarity=0.482 Sum_probs=183.3
Q ss_pred CCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCC-ccHHHHHHHHH
Q 011060 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLI 82 (494)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll 82 (494)
.+|...+..++..++++.|+++||||++..+..++..++.++..+.+.. .......+.+.++.... ..+...+..++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 261 (412)
T 3fht_A 184 QGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR--EEETLDTIKQYYVLCSSRDEKFQALCNLY 261 (412)
T ss_dssp TTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCG--GGSSCTTEEEEEEECSSHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeecc--ccccccCceEEEEEcCChHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999988776542 23345566666666554 46777777777
Q ss_pred HHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEE
Q 011060 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (494)
Q Consensus 83 ~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~ 161 (494)
... ...++||||++++.++.+++.|.+ .+.+..+||+|++++|.++++.|++++.+|||||+++++|||+|++++||+
T Consensus 262 ~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~ 340 (412)
T 3fht_A 262 GAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN 340 (412)
T ss_dssp HHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEE
T ss_pred hhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEE
Confidence 765 458999999999999999999985 789999999999999999999999999999999999999999999999999
Q ss_pred eCCC------CCHhHHHHHhhccCcCCCCceEEEecChhh-HHHHHHHHHHhcCCccccCCCChHHH
Q 011060 162 YELP------NDPETFVHRSGRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVGCKFEFVSPPVVEDV 221 (494)
Q Consensus 162 ~~~P------~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e-~~~~~~l~~~~~~~~~~~~~p~~~~~ 221 (494)
|++| .+..+|+||+||+||.|+.|.+++++++.+ ...++.+++.++.+++.++.+..+++
T Consensus 341 ~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 407 (412)
T 3fht_A 341 FDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEI 407 (412)
T ss_dssp SSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--------
T ss_pred ECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCccHHHH
Confidence 9999 467899999999999999999999998664 78899999999999998877665544
No 10
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.97 E-value=1e-30 Score=269.23 Aligned_cols=213 Identities=34% Similarity=0.578 Sum_probs=173.1
Q ss_pred CCcCCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCc-cHHHHHH
Q 011060 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT-SKRTILS 79 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~ 79 (494)
|++.+|...+..++..++++.|+|+||||+|..+..+.+.++.++..+.+.. .......+.++++..... .+...+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~ 272 (414)
T 3eiq_A 195 MLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKK--EELTLEGIRQFYINVEREEWKLDTLC 272 (414)
T ss_dssp HHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCC--CCCCTTSCCEEEEECSSSTTHHHHHH
T ss_pred hhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecC--CccCCCCceEEEEEeChHHhHHHHHH
Confidence 3567899999999999999999999999999999999999999887765432 233345566666655544 5888888
Q ss_pred HHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccE
Q 011060 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (494)
Q Consensus 80 ~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~ 158 (494)
.++... ...++||||++++.++.+++.|.. .+.+..+||+|++++|.++++.|++++.+|||||+++++|||+|++++
T Consensus 273 ~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~ 351 (414)
T 3eiq_A 273 DLYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSL 351 (414)
T ss_dssp HHHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSC
T ss_pred HHHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCE
Confidence 877655 457999999999999999999985 789999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccCCC
Q 011060 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (494)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (494)
||+|++|.+...|+||+||+||.|++|.|++|+++.+...++.+++.++..++.++..
T Consensus 352 Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (414)
T 3eiq_A 352 VINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLN 409 (414)
T ss_dssp EEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-
T ss_pred EEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChh
Confidence 9999999999999999999999999999999999999999999999999998887543
No 11
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.97 E-value=2.5e-29 Score=256.86 Aligned_cols=211 Identities=24% Similarity=0.462 Sum_probs=188.0
Q ss_pred CCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHHHH
Q 011060 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 83 (494)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~ 83 (494)
++|...+..++..+++..|+++||||+++.+..++..++.+|..+.+.. ........+.+++.......+...+..+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 246 (391)
T 1xti_A 168 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDD-ETKLTLHGLQQYYVKLKDNEKNRKLFDLLD 246 (391)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCC-CCCCCCTTCEEEEEECCGGGHHHHHHHHHH
T ss_pred cchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecC-ccccCcccceEEEEEcCchhHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999988776542 222334567778888888889888888887
Q ss_pred HHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEEe
Q 011060 84 VYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 162 (494)
Q Consensus 84 ~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~~ 162 (494)
.. ...++||||++++.++.+++.|.. ++.+..+||+|++++|.+++++|++++.+|||||+++++|+|+|++++||+|
T Consensus 247 ~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~ 325 (391)
T 1xti_A 247 VL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNY 325 (391)
T ss_dssp HS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEES
T ss_pred hc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEe
Confidence 65 568999999999999999999985 7899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHhHHHHHhhccCcCCCCceEEEecChh-hHHHHHHHHHHhcCCccccCCC
Q 011060 163 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFEFVSPP 216 (494)
Q Consensus 163 ~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~-e~~~~~~l~~~~~~~~~~~~~p 216 (494)
++|+++..|+||+||+||.|++|.+++++++. +...++.+++.+..++++++..
T Consensus 326 ~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 326 DMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp SCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred CCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 99999999999999999999999999999876 5577899999998888876543
No 12
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.97 E-value=6.2e-29 Score=253.73 Aligned_cols=216 Identities=31% Similarity=0.538 Sum_probs=185.3
Q ss_pred CCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCC-ccHHHHHHHHH
Q 011060 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLI 82 (494)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll 82 (494)
.+|...+..++..++++.|+++||||+++.+..++..++.++..+.+.. .......+.+.+..... ..+...+..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 238 (395)
T 3pey_A 161 QGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQT--NEVNVDAIKQLYMDCKNEADKFDVLTELY 238 (395)
T ss_dssp TTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCG--GGCSCTTEEEEEEECSSHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccc--cccccccccEEEEEcCchHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999998887776542 23334556666665543 45667777666
Q ss_pred HHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEE
Q 011060 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (494)
Q Consensus 83 ~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~ 161 (494)
... ...++||||++++.++.+++.|.. .+.+..+||+|++++|.+++++|++++.+|||||+++++|||+|++++||+
T Consensus 239 ~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~ 317 (395)
T 3pey_A 239 GLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVN 317 (395)
T ss_dssp TTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEE
T ss_pred Hhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEE
Confidence 544 458999999999999999999985 789999999999999999999999999999999999999999999999999
Q ss_pred eCCCC------CHhHHHHHhhccCcCCCCceEEEecCh-hhHHHHHHHHHHhc-CCccccCCCChHHHH
Q 011060 162 YELPN------DPETFVHRSGRTGRAGKEGTAILMFTS-SQRRTVRSLERDVG-CKFEFVSPPVVEDVL 222 (494)
Q Consensus 162 ~~~P~------~~~~y~qr~GR~gR~g~~g~~i~l~~~-~e~~~~~~l~~~~~-~~~~~~~~p~~~~~~ 222 (494)
|++|+ ++.+|+||+||+||.|++|.+++++.+ .+...++.+++.+. .++..++.+..+++.
T Consensus 318 ~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 386 (395)
T 3pey_A 318 YDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWDEVE 386 (395)
T ss_dssp SSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCSSCHHHHH
T ss_pred cCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCChHHHHHHH
Confidence 99999 999999999999999999999999985 55678888999888 777777776665544
No 13
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.97 E-value=3.4e-29 Score=225.03 Aligned_cols=156 Identities=34% Similarity=0.609 Sum_probs=146.3
Q ss_pred cccceEEEEEEcCCccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCC
Q 011060 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG 136 (494)
Q Consensus 58 ~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g 136 (494)
...+++++++.++...|...|.+++... ...++||||+|++.++.+++.|.. ++.+..+||+|++.+|..++++|+++
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 3566899999999999999999999876 567999999999999999999985 78999999999999999999999999
Q ss_pred cEEEEEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccC
Q 011060 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (494)
Q Consensus 137 ~~~iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (494)
+++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|++|.+++|+++.+...++.+++.++.++++++
T Consensus 85 ~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEECC
T ss_pred CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998887643
No 14
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=3.5e-29 Score=253.03 Aligned_cols=205 Identities=36% Similarity=0.599 Sum_probs=184.4
Q ss_pred CcCCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHH
Q 011060 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 81 (494)
Q Consensus 2 L~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l 81 (494)
++.+|...+..++..+++..|+++||||+|.++..+.+.++.++..+... ....+.+.++......+...+..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~ 233 (367)
T 1hv8_A 160 LNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAK------INANIEQSYVEVNENERFEALCRL 233 (367)
T ss_dssp HTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECC------SSSSSEEEEEECCGGGHHHHHHHH
T ss_pred hhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEec------CCCCceEEEEEeChHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999887665432 123566677777777888877777
Q ss_pred HHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEE
Q 011060 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (494)
Q Consensus 82 l~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI 160 (494)
+. ....++||||++++.++.+++.|.+ ++.+..+||++++++|.++++.|++++.+|||||+++++|+|+|++++||
T Consensus 234 l~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi 311 (367)
T 1hv8_A 234 LK--NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVI 311 (367)
T ss_dssp HC--STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEE
T ss_pred Hh--cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEE
Confidence 65 3567999999999999999999985 78999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccC
Q 011060 161 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (494)
Q Consensus 161 ~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (494)
++++|+++.+|+||+||+||.|++|.+++++++.+...++.+++.++.+++++.
T Consensus 312 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 312 NYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp ESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC
T ss_pred EecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceec
Confidence 999999999999999999999999999999999999999999999999887664
No 15
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=2.8e-29 Score=228.29 Aligned_cols=161 Identities=28% Similarity=0.502 Sum_probs=144.8
Q ss_pred cccceEEEEEEcCCcc-HHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccC
Q 011060 58 LAEGIKLYAISTTATS-KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ 135 (494)
Q Consensus 58 ~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~ 135 (494)
+..++.|+++.++... |...|..+++.. ...++||||++++.++.++..|.. ++.+..+||+|++.+|..+++.|++
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 4567889999888765 999998888765 457999999999999999999985 7899999999999999999999999
Q ss_pred CcEEEEEecccccccCCCCCccEEEEeCCC------CCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCC
Q 011060 136 GKFTVLVATDVAARGLDIPNVDLIIHYELP------NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 209 (494)
Q Consensus 136 g~~~iLVaTd~~~~Gidip~v~~VI~~~~P------~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~ 209 (494)
++++|||||+++++|+|+|++++||+||+| .+..+|+||+||+||.|+.|.+++|+++.+...++.+++.++.+
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSS 162 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred ccccCCCChH
Q 011060 210 FEFVSPPVVE 219 (494)
Q Consensus 210 ~~~~~~p~~~ 219 (494)
+++++++..+
T Consensus 163 ~~~~~~~~~~ 172 (175)
T 2rb4_A 163 IKQLNAEDMD 172 (175)
T ss_dssp CEEECSSCCC
T ss_pred ccccCCchhc
Confidence 9988776654
No 16
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=7.2e-29 Score=224.94 Aligned_cols=156 Identities=23% Similarity=0.451 Sum_probs=143.4
Q ss_pred ccceEEEEEEcCCccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCc
Q 011060 59 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK 137 (494)
Q Consensus 59 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~ 137 (494)
...++|+++.++...|...|.++++.. +..++||||++++.++.+++.|.. ++.+..+||+|++.+|..++++|++++
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 456889999999999999999999865 567999999999999999999985 789999999999999999999999999
Q ss_pred EEEEEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChh-hHHHHHHHHHHhcCCccccCC
Q 011060 138 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFEFVSP 215 (494)
Q Consensus 138 ~~iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~-e~~~~~~l~~~~~~~~~~~~~ 215 (494)
.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|++|.+++|+++. +...++.+++.+..++++++.
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 160 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC-
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCCh
Confidence 999999999999999999999999999999999999999999999999999999875 567899999999988887653
No 17
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.96 E-value=1.1e-30 Score=274.97 Aligned_cols=214 Identities=31% Similarity=0.478 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCC-ccHHHHHHHHH
Q 011060 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLI 82 (494)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll 82 (494)
.+|...+..|++.++.++|+|+||||++..+..++..++.++..+.+.. .......+.++++.+.. ..+...|..++
T Consensus 251 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 328 (479)
T 3fmp_B 251 QGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR--EEETLDTIKQYYVLCSSRDEKFQALCNLY 328 (479)
T ss_dssp TTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC--------------------------------
T ss_pred CCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccc--cccCcCCceEEEEEeCCHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999988877643 22334455555554443 46667777766
Q ss_pred HHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEE
Q 011060 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (494)
Q Consensus 83 ~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~ 161 (494)
... ...++||||++++.++.+++.|.. .+.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||+
T Consensus 329 ~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~ 407 (479)
T 3fmp_B 329 GAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN 407 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEE
Confidence 654 457999999999999999999985 788999999999999999999999999999999999999999999999999
Q ss_pred eCCCC------CHhHHHHHhhccCcCCCCceEEEecChhh-HHHHHHHHHHhcCCccccCCCChHH
Q 011060 162 YELPN------DPETFVHRSGRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVGCKFEFVSPPVVED 220 (494)
Q Consensus 162 ~~~P~------~~~~y~qr~GR~gR~g~~g~~i~l~~~~e-~~~~~~l~~~~~~~~~~~~~p~~~~ 220 (494)
||+|. +...|+||+|||||.|+.|.+++|+++.+ ...++.+++.++.+++.+..+..++
T Consensus 408 ~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~ 473 (479)
T 3fmp_B 408 FDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDE 473 (479)
T ss_dssp ------------------------------------------------------------------
T ss_pred ecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCccHHH
Confidence 99995 56899999999999999999999998765 7788899888888877766554443
No 18
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.96 E-value=5.5e-29 Score=229.51 Aligned_cols=168 Identities=27% Similarity=0.397 Sum_probs=132.1
Q ss_pred HHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEE
Q 011060 38 SRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEA 116 (494)
Q Consensus 38 ~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~ 116 (494)
...||++|..|.+.. ...+..++.++++.++...|...|.+++.. ...++||||++++.++.+++.|.. ++.+..
T Consensus 8 ~~~~~~~p~~i~v~~--~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~ 83 (191)
T 2p6n_A 8 SSGVDLGTENLYFQS--MGAASLDVIQEVEYVKEEAKMVYLLECLQK--TPPPVLIFAEKKADVDAIHEYLLLKGVEAVA 83 (191)
T ss_dssp ----------------------CCSEEEEEECCGGGHHHHHHHHHTT--SCSCEEEECSCHHHHHHHHHHHHHHTCCEEE
T ss_pred cccccCCCEEEEECC--CCCCCcCceEEEEEcChHHHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 456899998887642 334567889999999888999988888764 346899999999999999999985 899999
Q ss_pred EeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChh-h
Q 011060 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-Q 195 (494)
Q Consensus 117 lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~-e 195 (494)
+||+|++.+|.+++++|++++.+|||||+++++|+|+|++++||+||+|++++.|+||+||+||.|++|.+++|+++. +
T Consensus 84 lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~ 163 (191)
T 2p6n_A 84 IHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACD 163 (191)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSC
T ss_pred EeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999976 6
Q ss_pred HHHHHHHHHHhcCC
Q 011060 196 RRTVRSLERDVGCK 209 (494)
Q Consensus 196 ~~~~~~l~~~~~~~ 209 (494)
...++.|++.+...
T Consensus 164 ~~~~~~l~~~l~~~ 177 (191)
T 2p6n_A 164 ESVLMDLKALLLEA 177 (191)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 67777777765433
No 19
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.96 E-value=1.5e-28 Score=221.32 Aligned_cols=156 Identities=31% Similarity=0.584 Sum_probs=139.1
Q ss_pred cceEEEEEEcCCcc-HHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCc
Q 011060 60 EGIKLYAISTTATS-KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK 137 (494)
Q Consensus 60 ~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~ 137 (494)
.++.|+++.++... |...|.++++.. ...++||||+|++.++.++..|.. .+.+..+||+|++.+|.++++.|++++
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 80 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS 80 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 35678888877776 999999999876 568999999999999999999985 789999999999999999999999999
Q ss_pred EEEEEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccCCC
Q 011060 138 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (494)
Q Consensus 138 ~~iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (494)
.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|++|.+++++++.+...++.+++.++.+++.++.+
T Consensus 81 ~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (165)
T 1fuk_A 81 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 159 (165)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSC
T ss_pred CEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988877654
No 20
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.96 E-value=6.1e-30 Score=261.49 Aligned_cols=212 Identities=33% Similarity=0.585 Sum_probs=45.0
Q ss_pred CcCCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCc-cHHHHHHH
Q 011060 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT-SKRTILSD 80 (494)
Q Consensus 2 L~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~ 80 (494)
++.+|...+..++..+++..|+++||||+|+.+.++...++.+|..+.+.. .......+.+++...... .+...+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~ 252 (394)
T 1fuu_A 175 LSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK--DELTLEGIKQFYVNVEEEEYKYECLTD 252 (394)
T ss_dssp HHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------------
T ss_pred hCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecC--ccccCCCceEEEEEcCchhhHHHHHHH
Confidence 456889999999999999999999999999999999999999888776542 222334455555544433 36677777
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEE
Q 011060 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~V 159 (494)
+++.. ...++||||++++.++.+++.|.+ .+.+..+||+|++++|.++++.|++++.+|||||+++++|+|+|++++|
T Consensus 253 ~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~V 331 (394)
T 1fuu_A 253 LYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLV 331 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEE
Confidence 77654 457999999999999999999985 7889999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccCCC
Q 011060 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (494)
|++++|+++..|+||+||+||.|++|.|++++++.+...++.+++.++.+++.++.+
T Consensus 332 i~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 388 (394)
T 1fuu_A 332 INYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 388 (394)
T ss_dssp ---------------------------------------------------------
T ss_pred EEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcc
Confidence 999999999999999999999999999999999999999999999888888766543
No 21
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.95 E-value=2.3e-28 Score=224.27 Aligned_cols=154 Identities=40% Similarity=0.553 Sum_probs=127.8
Q ss_pred ccccceEEEEEEcCCccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccC
Q 011060 57 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ 135 (494)
Q Consensus 57 ~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~ 135 (494)
.+..++.++++.++...|...|.++++...+..++||||++++.++.+++.|.. ++.+..+||+|++.+|.+++++|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 346789999999999999999999998765678999999999999999999985 7899999999999999999999999
Q ss_pred CcEEEEEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCc
Q 011060 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 210 (494)
Q Consensus 136 g~~~iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~ 210 (494)
++++|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|++|.+++|+++.+...++.+++.+....
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 169 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK 169 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTT
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999888888888775443
No 22
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.95 E-value=1.7e-27 Score=255.65 Aligned_cols=197 Identities=20% Similarity=0.334 Sum_probs=157.9
Q ss_pred CcCC--HHHHHHH--HHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHH
Q 011060 2 LAVG--FEEDVEL--ILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTI 77 (494)
Q Consensus 2 L~~G--F~~~l~~--Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~ 77 (494)
+++| |++++.. ++....++.|+|+||||+++.+...+..++..+..+.+... ....++.+... .....+...
T Consensus 178 s~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~---~~r~nl~~~v~-~~~~~~~~~ 253 (591)
T 2v1x_A 178 SQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS---FNRPNLYYEVR-QKPSNTEDF 253 (591)
T ss_dssp STTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC---CCCTTEEEEEE-ECCSSHHHH
T ss_pred cccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC---CCCcccEEEEE-eCCCcHHHH
Confidence 4566 7777665 44444558999999999999998888888876544433321 11233433322 233334444
Q ss_pred HHHHHHHHc---cCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCC
Q 011060 78 LSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (494)
Q Consensus 78 l~~ll~~~~---~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidi 153 (494)
+..+++.+. .+.++||||+|++.++.+++.|.. ++.+..+|++|++++|.+++++|++++++|||||+++++|||+
T Consensus 254 ~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~ 333 (591)
T 2v1x_A 254 IEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDK 333 (591)
T ss_dssp HHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCC
T ss_pred HHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCc
Confidence 444544442 467999999999999999999985 7899999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHH
Q 011060 154 PNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 154 p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l 202 (494)
|+|++||+|++|.+++.|+||+||+||.|+++.|++|+++.|...++.+
T Consensus 334 p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 334 PDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp SCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred ccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887666655
No 23
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.95 E-value=4.5e-27 Score=234.89 Aligned_cols=194 Identities=28% Similarity=0.540 Sum_probs=162.6
Q ss_pred CcCCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHH
Q 011060 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 81 (494)
Q Consensus 2 L~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l 81 (494)
++.+|..++..++..++...|+++||||+|..+.+....++.++..+... .....+.+.++......+.. + ..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~-~~ 214 (337)
T 2z0m_A 142 FEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC-----IGLANVEHKFVHVKDDWRSK-V-QA 214 (337)
T ss_dssp HHTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS-----GGGGGEEEEEEECSSSSHHH-H-HH
T ss_pred hccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc-----cccCCceEEEEEeChHHHHH-H-HH
Confidence 45788999999999999999999999999999999999999888766432 22345566666665544332 2 23
Q ss_pred HHHHccCCeEEEEeCChHHHHHHHHHHHccCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEE
Q 011060 82 ITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (494)
Q Consensus 82 l~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~ 161 (494)
+.. ....++||||++++.++.+++.|. .+..+||+|++.+|.+++++|++++.+|||||+++++|+|+|++++||+
T Consensus 215 ~~~-~~~~~~lvf~~~~~~~~~l~~~l~---~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~ 290 (337)
T 2z0m_A 215 LRE-NKDKGVIVFVRTRNRVAKLVRLFD---NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVIN 290 (337)
T ss_dssp HHT-CCCSSEEEECSCHHHHHHHHTTCT---TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEE
T ss_pred HHh-CCCCcEEEEEcCHHHHHHHHHHhh---hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEE
Confidence 322 356799999999999999998876 6889999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhc
Q 011060 162 YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (494)
Q Consensus 162 ~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~ 207 (494)
|++|+++..|+||+||+||.|++|.+++++. .+...++.+++.++
T Consensus 291 ~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 291 FDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp SSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred ecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 9999999999999999999999999999999 78888888876654
No 24
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.94 E-value=8.6e-28 Score=254.58 Aligned_cols=214 Identities=30% Similarity=0.506 Sum_probs=152.7
Q ss_pred CCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEc-CCccHHHHHHHHH
Q 011060 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAIST-TATSKRTILSDLI 82 (494)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~-~~~~k~~~l~~ll 82 (494)
.+|...+..|+..++++.|+|+||||+++.+..+...++.++..+.+... ......+.+.+... ....+...+..++
T Consensus 275 ~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~k~~~l~~ll 352 (508)
T 3fho_A 275 QGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTE--ELSVEGIKQLYMDCQSEEHKYNVLVELY 352 (508)
T ss_dssp --CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCC--C----CCCCEEEEC--CHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccc--cCCcccceEEEEECCchHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999988877765422 22233444444444 3446677777776
Q ss_pred HHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEE
Q 011060 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (494)
Q Consensus 83 ~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~ 161 (494)
... ...++||||++++.++.+++.|.+ .+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 353 ~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~ 431 (508)
T 3fho_A 353 GLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVN 431 (508)
T ss_dssp C----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC
T ss_pred Hhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEE
Confidence 654 458999999999999999999985 788999999999999999999999999999999999999999999999999
Q ss_pred eCCC------CCHhHHHHHhhccCcCCCCceEEEecCh-hhHHHHHHHHHHhcCCccccCCCChHH
Q 011060 162 YELP------NDPETFVHRSGRTGRAGKEGTAILMFTS-SQRRTVRSLERDVGCKFEFVSPPVVED 220 (494)
Q Consensus 162 ~~~P------~~~~~y~qr~GR~gR~g~~g~~i~l~~~-~e~~~~~~l~~~~~~~~~~~~~p~~~~ 220 (494)
+++| .+...|+||+||+||.|+.|.+++|+.+ .+...++.+++.+..+++.++.+..++
T Consensus 432 ~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~ 497 (508)
T 3fho_A 432 YDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDDYEE 497 (508)
T ss_dssp ----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC---------
T ss_pred ECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCccHHH
Confidence 9999 7899999999999999999999999984 556778999999998888776555443
No 25
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.94 E-value=7.2e-26 Score=240.29 Aligned_cols=194 Identities=20% Similarity=0.363 Sum_probs=154.6
Q ss_pred CcCC--HHHHHHH---HHHhCCCCCcEEEEeecCChHHHHHHHHHcC--CCcEEEeccccccccccceEEEEEEcCCccH
Q 011060 2 LAVG--FEEDVEL---ILENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSK 74 (494)
Q Consensus 2 L~~G--F~~~l~~---Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~--~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k 74 (494)
++.| |+.++.. +++.+| +.|++++|||+++.+...+..++. ++..+ +... ...++.+.. .....+
T Consensus 152 ~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~----~r~~l~~~v--~~~~~~ 223 (523)
T 1oyw_A 152 SQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSF----DRPNIRYML--MEKFKP 223 (523)
T ss_dssp CTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-ECCC----CCTTEEEEE--EECSSH
T ss_pred CcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eCCC----CCCceEEEE--EeCCCH
Confidence 3455 6666544 455564 689999999999987664444443 44332 2211 123333322 233456
Q ss_pred HHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCC
Q 011060 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (494)
Q Consensus 75 ~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidi 153 (494)
...|..++... ++.++||||+|++.++.+++.|.. ++.+..+||+|++++|.+++++|++++.+|||||+++++|||+
T Consensus 224 ~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~ 302 (523)
T 1oyw_A 224 LDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINK 302 (523)
T ss_dssp HHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCC
T ss_pred HHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCc
Confidence 66666666654 567999999999999999999985 7899999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHH
Q 011060 154 PNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (494)
Q Consensus 154 p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~ 204 (494)
|+|++||+|++|.+++.|+||+||+||.|+++.|++++++.+...++.+..
T Consensus 303 p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 303 PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred cCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998877776654
No 26
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.89 E-value=1.7e-28 Score=222.04 Aligned_cols=154 Identities=29% Similarity=0.497 Sum_probs=139.6
Q ss_pred ceEEEEEEcCC-ccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcE
Q 011060 61 GIKLYAISTTA-TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF 138 (494)
Q Consensus 61 ~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~ 138 (494)
++.++++.++. ..|..+|.++++.. ...++||||++++.++.+++.|.. ++.+..+||+|++.+|..++++|++++.
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 45667777776 78999888888764 457999999999999999999985 7899999999999999999999999999
Q ss_pred EEEEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccCC
Q 011060 139 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 215 (494)
Q Consensus 139 ~iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~ 215 (494)
+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|++|.+++++++.+...++.+++.++.++++..+
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVI 158 (170)
Confidence 99999999999999999999999999999999999999999999999999999999999999999888777765443
No 27
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.94 E-value=2.2e-26 Score=237.52 Aligned_cols=193 Identities=22% Similarity=0.383 Sum_probs=153.7
Q ss_pred CCc-CCHHHH-HHHHHHhCC-----------CCCcEEEEeec-CChHHH-HHHHHHcCCCcEEEeccccccccccceEEE
Q 011060 1 MLA-VGFEED-VELILENLP-----------PKRQSMLFSAT-MPSWVK-KLSRKYLDNPLNIDLVGNQDEKLAEGIKLY 65 (494)
Q Consensus 1 mL~-~GF~~~-l~~Il~~~~-----------~~~q~il~SAT-~~~~v~-~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~ 65 (494)
||+ +||.++ +..|++.+| ++.|+++|||| +|..+. .+...++. +.+. ........+.+.
T Consensus 161 ~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~i~~~ 234 (414)
T 3oiy_A 161 LLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVG--RLVSVARNITHV 234 (414)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSS--CCCCCCCSEEEE
T ss_pred HHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcC--ccccccccchhe
Confidence 466 999999 899999887 88999999999 666554 33444433 1111 122334566666
Q ss_pred EEEcCCccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEE-EEeCCCCHHHHHHHHhhccCCcEEEEEe
Q 011060 66 AISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASE-ALHGDISQHQRERTLNGFRQGKFTVLVA 143 (494)
Q Consensus 66 ~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~-~lhg~~~~~~R~~~~~~F~~g~~~iLVa 143 (494)
++.. .+...|..+++.. +.++||||+|++.++.+++.|.. ++.+. .+||+ +|+ +++|++|+++||||
T Consensus 235 ~~~~---~~~~~l~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLva 303 (414)
T 3oiy_A 235 RISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIG 303 (414)
T ss_dssp EESS---CCHHHHHHHHHHH--CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEE
T ss_pred eecc---CHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEE
Confidence 6654 4566667777663 48999999999999999999985 78888 89995 444 99999999999999
Q ss_pred ----cccccccCCCCC-ccEEEEeCCC--CCHhHHHHHhhccCcCC----CCceEEEecChhhHHHHHHHHHHhc--CCc
Q 011060 144 ----TDVAARGLDIPN-VDLIIHYELP--NDPETFVHRSGRTGRAG----KEGTAILMFTSSQRRTVRSLERDVG--CKF 210 (494)
Q Consensus 144 ----Td~~~~Gidip~-v~~VI~~~~P--~~~~~y~qr~GR~gR~g----~~g~~i~l~~~~e~~~~~~l~~~~~--~~~ 210 (494)
|+++++|||+|+ |++||+|++| .++.+|+||+|||||.| ++|.+++|+ .+...++.+++.++ .++
T Consensus 304 t~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~~~~~~ 381 (414)
T 3oiy_A 304 VQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEE 381 (414)
T ss_dssp ECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHHCC
T ss_pred ecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhcccccc
Confidence 999999999999 9999999999 99999999999999987 589999999 56667788887776 444
Q ss_pred cc
Q 011060 211 EF 212 (494)
Q Consensus 211 ~~ 212 (494)
+.
T Consensus 382 ~~ 383 (414)
T 3oiy_A 382 EI 383 (414)
T ss_dssp CE
T ss_pred cc
Confidence 43
No 28
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.92 E-value=4.3e-26 Score=246.51 Aligned_cols=125 Identities=21% Similarity=0.267 Sum_probs=111.4
Q ss_pred cCCccHHHHHHHHHHH-HccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc
Q 011060 69 TTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 69 ~~~~~k~~~l~~ll~~-~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~ 146 (494)
.....|..+|..++.. +..+.++||||+|++.++.|+..|.. ++++.+|||++.+.+|..+.++|+.+ .||||||+
T Consensus 412 ~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdm 489 (844)
T 1tf5_A 412 RTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNM 489 (844)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETT
T ss_pred eCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCc
Confidence 3445677777776654 34567999999999999999999985 89999999999999998888888877 59999999
Q ss_pred ccccCCCC--------CccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhh
Q 011060 147 AARGLDIP--------NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 147 ~~~Gidip--------~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (494)
|+||+||+ ++.+||||++|.+...|+||+|||||+|++|.+++|++..|
T Consensus 490 AgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 490 AGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp SSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred cccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 99999999 78899999999999999999999999999999999998766
No 29
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.92 E-value=5.1e-25 Score=242.98 Aligned_cols=177 Identities=16% Similarity=0.346 Sum_probs=140.5
Q ss_pred HHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHH-HHHHHHHHH--c
Q 011060 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVY--A 86 (494)
Q Consensus 10 l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~l~~ll~~~--~ 86 (494)
+..|+... ++.|+|+||||++.+ . +..|+.++..+.+... ...+++++...+..++.. ++..+++.+ .
T Consensus 231 l~~l~~~~-~~~~iIl~SAT~~~~--~-l~~~~~~~~vi~v~gr-----~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~ 301 (773)
T 2xau_A 231 LKQVVKRR-PDLKIIIMSATLDAE--K-FQRYFNDAPLLAVPGR-----TYPVELYYTPEFQRDYLDSAIRTVLQIHATE 301 (773)
T ss_dssp HHHHHHHC-TTCEEEEEESCSCCH--H-HHHHTTSCCEEECCCC-----CCCEEEECCSSCCSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhC-CCceEEEEeccccHH--H-HHHHhcCCCcccccCc-----ccceEEEEecCCchhHHHHHHHHHHHHHHhc
Confidence 44455444 478999999999753 3 3456666666655332 124566666555555443 344444433 2
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc------------cCcEEEEeCCCCHHHHHHHHhhcc-----CCcEEEEEecccccc
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS------------IIASEALHGDISQHQRERTLNGFR-----QGKFTVLVATDVAAR 149 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~------------~~~~~~lhg~~~~~~R~~~~~~F~-----~g~~~iLVaTd~~~~ 149 (494)
..+++||||+++++++.+++.|.+ .+.+.++||+|++++|.++++.|+ +|..+|||||+++++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~ 381 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAET 381 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHh
Confidence 468999999999999999999873 567999999999999999999999 999999999999999
Q ss_pred cCCCCCccEEEEeCC------------------CCCHhHHHHHhhccCcCCCCceEEEecChhhH
Q 011060 150 GLDIPNVDLIIHYEL------------------PNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 150 Gidip~v~~VI~~~~------------------P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (494)
|||||+|++||++++ |.+.++|+||+|||||. ++|.||+|+++.+.
T Consensus 382 GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 382 SLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp TCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred CcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 999999999999887 89999999999999999 89999999988664
No 30
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.91 E-value=2.8e-24 Score=244.75 Aligned_cols=205 Identities=20% Similarity=0.348 Sum_probs=156.5
Q ss_pred CCc-CCHHHH-HHHHHHhCC-----------CCCcEEEEeec-CChHHHH-HHHHHcCCCcEEEeccccccccccceEEE
Q 011060 1 MLA-VGFEED-VELILENLP-----------PKRQSMLFSAT-MPSWVKK-LSRKYLDNPLNIDLVGNQDEKLAEGIKLY 65 (494)
Q Consensus 1 mL~-~GF~~~-l~~Il~~~~-----------~~~q~il~SAT-~~~~v~~-~~~~~~~~~~~v~~~~~~~~~~~~~i~~~ 65 (494)
||+ +||.++ ++.|++.+| ++.|+++|||| .|..+.. +...++. +.+. .......++.+.
T Consensus 218 ~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~--~~~~~~~~i~~~ 291 (1104)
T 4ddu_A 218 LLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVG--RLVSVARNITHV 291 (1104)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCC--BCCCCCCCEEEE
T ss_pred hhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEec--cCCCCcCCceeE
Confidence 567 999999 999999888 88999999999 6766553 3333333 2222 123345667777
Q ss_pred EEEcCCccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEE-EEeCCCCHHHHHHHHhhccCCcEEEEEe
Q 011060 66 AISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASE-ALHGDISQHQRERTLNGFRQGKFTVLVA 143 (494)
Q Consensus 66 ~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~-~lhg~~~~~~R~~~~~~F~~g~~~iLVa 143 (494)
++.+ .+...|..++..+ +.++||||++++.++.++..|.. ++.+. .+||+ |.+ +++|++|+++||||
T Consensus 292 ~~~~---~k~~~L~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVa 360 (1104)
T 4ddu_A 292 RISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIG 360 (1104)
T ss_dssp EESC---CCHHHHHHHHHHH--CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEE
T ss_pred EEec---CHHHHHHHHHHhc--CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEE
Confidence 7655 4566667777664 48999999999999999999985 78898 99993 555 99999999999999
Q ss_pred ----cccccccCCCCC-ccEEEEeCCCC----------------------------------------------------
Q 011060 144 ----TDVAARGLDIPN-VDLIIHYELPN---------------------------------------------------- 166 (494)
Q Consensus 144 ----Td~~~~Gidip~-v~~VI~~~~P~---------------------------------------------------- 166 (494)
|+++++|||+|+ |++|||||+|.
T Consensus 361 tas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~ 440 (1104)
T 4ddu_A 361 VQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEK 440 (1104)
T ss_dssp ETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHH
T ss_pred ecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999 99999999998
Q ss_pred --------------------CHhHHHHHhhccCcCC----CCceEEEecChhhHHHHHHHHHHhc----CCccccCCCCh
Q 011060 167 --------------------DPETFVHRSGRTGRAG----KEGTAILMFTSSQRRTVRSLERDVG----CKFEFVSPPVV 218 (494)
Q Consensus 167 --------------------~~~~y~qr~GR~gR~g----~~g~~i~l~~~~e~~~~~~l~~~~~----~~~~~~~~p~~ 218 (494)
|+.+|+||+|||||.+ .+|.+++++ .|...++.|++.+. .++..+.....
T Consensus 441 i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~~~~~~~~~~~~~~~~ 518 (1104)
T 4ddu_A 441 VKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEEEIIEEAEANW 518 (1104)
T ss_dssp HHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHTCCCEEEGGGCCH
T ss_pred HhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHhhhcccccccccccCH
Confidence 8889999999999955 356777777 45566777766664 33433443344
Q ss_pred HHHHHH
Q 011060 219 EDVLES 224 (494)
Q Consensus 219 ~~~~~~ 224 (494)
+++++.
T Consensus 519 ~~~~~~ 524 (1104)
T 4ddu_A 519 KELVHE 524 (1104)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 31
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.90 E-value=8.8e-25 Score=235.42 Aligned_cols=179 Identities=15% Similarity=0.180 Sum_probs=141.7
Q ss_pred CcCCHHHHHHHHHHhCC-CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHH
Q 011060 2 LAVGFEEDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 2 L~~GF~~~l~~Il~~~~-~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (494)
++++|..++..|++.++ +++|+|+||||+|..+..++. .++..+.+.... +......++..
T Consensus 289 ~~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~---------------~~~~~~~ll~~ 350 (618)
T 2whx_A 289 TDPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI---------------PERSWNTGFDW 350 (618)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC---------------CSSCCSSSCHH
T ss_pred CCccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC---------------CHHHHHHHHHH
Confidence 47889999999998886 689999999999887543322 244444332110 00111112222
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEE
Q 011060 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~V 159 (494)
+.+ ...++||||+|++.++.+++.|.+ .+.+..+|++ +|++++++|++|+.+||||||++++|||+| |++|
T Consensus 351 l~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~V 422 (618)
T 2whx_A 351 ITD---YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRV 422 (618)
T ss_dssp HHH---CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEE
T ss_pred HHh---CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEE
Confidence 222 367999999999999999999985 7899999985 788899999999999999999999999997 9988
Q ss_pred --------------------EEeCCCCCHhHHHHHhhccCcCC-CCceEEEecC---hhhHHHHHHHHHHh
Q 011060 160 --------------------IHYELPNDPETFVHRSGRTGRAG-KEGTAILMFT---SSQRRTVRSLERDV 206 (494)
Q Consensus 160 --------------------I~~~~P~~~~~y~qr~GR~gR~g-~~g~~i~l~~---~~e~~~~~~l~~~~ 206 (494)
|+|++|.+.++|+||+|||||.| ++|.+++|++ +.+...++.+++.+
T Consensus 423 Id~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 423 IDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred EECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 78888999999999999999996 5999999998 77777788887765
No 32
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.89 E-value=1.3e-23 Score=225.15 Aligned_cols=187 Identities=22% Similarity=0.286 Sum_probs=141.3
Q ss_pred CCcCCHHHHHHHHHHhCCCCCc--EEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHH
Q 011060 1 MLAVGFEEDVELILENLPPKRQ--SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q--~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l 78 (494)
|++++|..++..|++.++...| +++||||+|..+. ...+....+... ....+..+ .....
T Consensus 329 ~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~i~------~~~p~i~~v~~~----~~~~i~~~----~~~~~---- 390 (666)
T 3o8b_A 329 STDSTTILGIGTVLDQAETAGARLVVLATATPPGSVT------VPHPNIEEVALS----NTGEIPFY----GKAIP---- 390 (666)
T ss_dssp CCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTCCC------CCCTTEEEEECB----SCSSEEET----TEEEC----
T ss_pred hcCccHHHHHHHHHHhhhhcCCceEEEECCCCCcccc------cCCcceEEEeec----ccchhHHH----Hhhhh----
Confidence 7899999999999999998777 6778999988421 122222222100 01111111 00000
Q ss_pred HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCcc
Q 011060 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 79 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~ 157 (494)
++ ....+++||||+|++.++.+++.|.+ ++.+..+||+|++++ |+++..+||||||++++|||+| |+
T Consensus 391 ---l~-~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~ 458 (666)
T 3o8b_A 391 ---IE-AIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FD 458 (666)
T ss_dssp ---GG-GSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BS
T ss_pred ---hh-hccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-Cc
Confidence 11 12568999999999999999999985 799999999999875 4556669999999999999997 99
Q ss_pred EEE----------EeC-----------CCCCHhHHHHHhhccCcCCCCceEEEecChhhHHH--H--HHHHHHhcCCccc
Q 011060 158 LII----------HYE-----------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRT--V--RSLERDVGCKFEF 212 (494)
Q Consensus 158 ~VI----------~~~-----------~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~--~--~~l~~~~~~~~~~ 212 (494)
+|| ||| +|.+.++|+||+||||| +++|. |+|+++.+... + +.+++..+..+++
T Consensus 459 ~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~~~~~ 536 (666)
T 3o8b_A 459 SVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDAGCAW 536 (666)
T ss_dssp EEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHHHHHT
T ss_pred EEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcCCccc
Confidence 988 677 89999999999999999 99999 99999877654 4 7778888777888
Q ss_pred cCCCChH
Q 011060 213 VSPPVVE 219 (494)
Q Consensus 213 ~~~p~~~ 219 (494)
..+|..+
T Consensus 537 ~~l~~~~ 543 (666)
T 3o8b_A 537 YELTPAE 543 (666)
T ss_dssp SCCCHHH
T ss_pred ccCCchH
Confidence 7776543
No 33
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.1e-22 Score=231.92 Aligned_cols=199 Identities=22% Similarity=0.303 Sum_probs=146.2
Q ss_pred CCcCCHHHHHHHHHHhCCCCCcEEEEeecCChH--HHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCc------
Q 011060 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSW--VKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT------ 72 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~--v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~------ 72 (494)
|++++|...++.|+..++++.|+|+||||+|+. +...+..+..++..+...... +..++++++.....
T Consensus 302 l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r----p~pl~~~~~~~~~~~~~~~v 377 (1108)
T 3l9o_A 302 MRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR----PTPLQHYLFPAHGDGIYLVV 377 (1108)
T ss_dssp TTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC----SSCEEEEEEETTSSCCEEEE
T ss_pred ccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC----cccceEEEeecCCcceeeee
Confidence 577889999999999999999999999999874 445566666666555332211 12223333221100
Q ss_pred -------------------------------------------cH---HHHHHHHHHHHc--cCCeEEEEeCChHHHHHH
Q 011060 73 -------------------------------------------SK---RTILSDLITVYA--KGGKTIVFTQTKRDADEV 104 (494)
Q Consensus 73 -------------------------------------------~k---~~~l~~ll~~~~--~~~~~iVF~~t~~~~~~l 104 (494)
.+ ...+..++..+. ...++||||++++.|+.+
T Consensus 378 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~l 457 (1108)
T 3l9o_A 378 DEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEEL 457 (1108)
T ss_dssp ETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHH
T ss_pred ccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHH
Confidence 00 233334444332 346999999999999999
Q ss_pred HHHHHc-cC---------------------------------------cEEEEeCCCCHHHHHHHHhhccCCcEEEEEec
Q 011060 105 SLALTS-II---------------------------------------ASEALHGDISQHQRERTLNGFRQGKFTVLVAT 144 (494)
Q Consensus 105 ~~~l~~-~~---------------------------------------~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaT 144 (494)
+..|.. .+ .+.++||+|++.+|+.+++.|++|.++|||||
T Consensus 458 a~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT 537 (1108)
T 3l9o_A 458 ALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFAT 537 (1108)
T ss_dssp HHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEE
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEEC
Confidence 988763 11 17899999999999999999999999999999
Q ss_pred ccccccCCCCCccEEEEeCCC--------CCHhHHHHHhhccCcCC--CCceEEEecChh-hHHHHHHHH
Q 011060 145 DVAARGLDIPNVDLIIHYELP--------NDPETFVHRSGRTGRAG--KEGTAILMFTSS-QRRTVRSLE 203 (494)
Q Consensus 145 d~~~~Gidip~v~~VI~~~~P--------~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~-e~~~~~~l~ 203 (494)
+++++|||+|++++||+++.| .++..|+||+|||||.| ..|.||+++.+. +...++.+.
T Consensus 538 ~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~ 607 (1108)
T 3l9o_A 538 ETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMV 607 (1108)
T ss_dssp SCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHH
T ss_pred cHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHh
Confidence 999999999999999987764 46778999999999999 789999998875 334444443
No 34
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.89 E-value=1.4e-22 Score=222.78 Aligned_cols=186 Identities=23% Similarity=0.376 Sum_probs=136.9
Q ss_pred cCCHHHHHHHHHHhC---CCCCcEEEEeecCChHHHHHHHHHcCCCcEEEecccccccccc----ceEEEEEEcC-----
Q 011060 3 AVGFEEDVELILENL---PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE----GIKLYAISTT----- 70 (494)
Q Consensus 3 ~~GF~~~l~~Il~~~---~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~----~i~~~~~~~~----- 70 (494)
+.++...++.|+..+ .++.|+|+||||+++ ..++++ |+..+ .+....... .... .....+....
T Consensus 152 ~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~-~~~~~~r~~-~l~~~~~~~~~~~~~~~~~~~~~ 227 (702)
T 2p6r_A 152 SEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDAD-YYVSDWRPV-PLVEGVLCEGTLELFDGAFSTSR 227 (702)
T ss_dssp CTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCE-EEECCCCSS-CEEEEEECSSEEEEEETTEEEEE
T ss_pred CCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCC-cccCCCCCc-cceEEEeeCCeeeccCcchhhhh
Confidence 446777777776665 578999999999986 455554 55432 222211100 0000 0001111100
Q ss_pred CccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcc-------------------------------CcEEEEeC
Q 011060 71 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-------------------------------IASEALHG 119 (494)
Q Consensus 71 ~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~-------------------------------~~~~~lhg 119 (494)
...+...+.+ .+.+++++||||++++.++.++..|.+. +.+..+|+
T Consensus 228 ~~~~~~~~~~---~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~ 304 (702)
T 2p6r_A 228 RVKFEELVEE---CVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHA 304 (702)
T ss_dssp ECCHHHHHHH---HHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECT
T ss_pred hhhHHHHHHH---HHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecC
Confidence 0013344433 3446789999999999999999888642 35888999
Q ss_pred CCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEE----eC---CCCCHhHHHHHhhccCcCC--CCceEEEe
Q 011060 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE---LPNDPETFVHRSGRTGRAG--KEGTAILM 190 (494)
Q Consensus 120 ~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~----~~---~P~~~~~y~qr~GR~gR~g--~~g~~i~l 190 (494)
+|++++|..+++.|++|+++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.| ..|.|+++
T Consensus 305 ~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l 384 (702)
T 2p6r_A 305 GLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIII 384 (702)
T ss_dssp TSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEE
Confidence 999999999999999999999999999999999999999998 76 7899999999999999988 58999999
Q ss_pred cChhh
Q 011060 191 FTSSQ 195 (494)
Q Consensus 191 ~~~~e 195 (494)
+++.+
T Consensus 385 ~~~~~ 389 (702)
T 2p6r_A 385 VGKRD 389 (702)
T ss_dssp CCGGG
T ss_pred ecCcc
Confidence 99877
No 35
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.89 E-value=1.2e-23 Score=226.96 Aligned_cols=127 Identities=24% Similarity=0.235 Sum_probs=113.2
Q ss_pred EEcCCccHHHHHHHHHHH-HccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEec
Q 011060 67 ISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT 144 (494)
Q Consensus 67 ~~~~~~~k~~~l~~ll~~-~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaT 144 (494)
+......|..+|..++.. +..+.++||||+|++.++.|+..|.+ ++++.+||+++.+.++..+.++|+.| .|+|||
T Consensus 419 v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIAT 496 (853)
T 2fsf_A 419 VYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIAT 496 (853)
T ss_dssp EESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEE
T ss_pred EEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEec
Confidence 334556788888777754 34567999999999999999999985 89999999999999999999999998 599999
Q ss_pred ccccccCCCCCc-------------------------------------cEEEEeCCCCCHhHHHHHhhccCcCCCCceE
Q 011060 145 DVAARGLDIPNV-------------------------------------DLIIHYELPNDPETFVHRSGRTGRAGKEGTA 187 (494)
Q Consensus 145 d~~~~Gidip~v-------------------------------------~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~ 187 (494)
|+|+||+||+.. .|||+|++|.+...|+||+|||||+|++|.+
T Consensus 497 nmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s 576 (853)
T 2fsf_A 497 NMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSS 576 (853)
T ss_dssp SCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred ccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeE
Confidence 999999999973 6999999999999999999999999999999
Q ss_pred EEecChhh
Q 011060 188 ILMFTSSQ 195 (494)
Q Consensus 188 i~l~~~~e 195 (494)
++|++..|
T Consensus 577 ~~fls~eD 584 (853)
T 2fsf_A 577 RFYLSMED 584 (853)
T ss_dssp EEEEETTS
T ss_pred EEEecccH
Confidence 99998876
No 36
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.89 E-value=2.4e-24 Score=223.85 Aligned_cols=177 Identities=19% Similarity=0.200 Sum_probs=123.6
Q ss_pred CCHHHHHHHHHHhC-CCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHHH
Q 011060 4 VGFEEDVELILENL-PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 82 (494)
Q Consensus 4 ~GF~~~l~~Il~~~-~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll 82 (494)
.+|...+..+...+ +.+.|+++||||+++.+..++. .+..+... ....+...+..++..+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~----~~~~~~~~--------------~~~~~~~~~~~~~~~l~ 174 (440)
T 1yks_A 113 PASIAARGWAAHRARANESATILMTATPPGTSDEFPH----SNGEIEDV--------------QTDIPSEPWNTGHDWIL 174 (440)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC----CSSCEEEE--------------ECCCCSSCCSSSCHHHH
T ss_pred cchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhh----cCCCeeEe--------------eeccChHHHHHHHHHHH
Confidence 33444444444443 3679999999999877543321 11111110 01111111122223332
Q ss_pred HHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEE
Q 011060 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (494)
Q Consensus 83 ~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~ 161 (494)
+ ...++||||++++.++.+++.|.. .+.+..+|| ++|++++++|++|+++|||||+++++|||+| +++||+
T Consensus 175 ~---~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~ 246 (440)
T 1yks_A 175 A---DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLD 246 (440)
T ss_dssp H---CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEE
T ss_pred h---cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEe
Confidence 2 368999999999999999999985 789999999 4688999999999999999999999999999 999986
Q ss_pred -------------------eCCCCCHhHHHHHhhccCcC-CCCceEEEec---ChhhHHHHHHHHHHh
Q 011060 162 -------------------YELPNDPETFVHRSGRTGRA-GKEGTAILMF---TSSQRRTVRSLERDV 206 (494)
Q Consensus 162 -------------------~~~P~~~~~y~qr~GR~gR~-g~~g~~i~l~---~~~e~~~~~~l~~~~ 206 (494)
|+.|.+.++|+||+||+||. +++|.|++|+ ++.+...++.++..+
T Consensus 247 ~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 247 CRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred CCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 89999999999999999997 6899999996 567777777777665
No 37
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.89 E-value=3.5e-22 Score=220.30 Aligned_cols=199 Identities=22% Similarity=0.245 Sum_probs=145.9
Q ss_pred CcCCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEE------EcC-----
Q 011060 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAI------STT----- 70 (494)
Q Consensus 2 L~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~------~~~----- 70 (494)
.+..+...++.|+..++.+.|+|+||||+|+ ..++++ |+..+ .+..... . ..+...+. ...
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~-~l~~~-~~~~~~r---p--~~l~~~~~~~~~~~~~~~~~~~ 222 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAE-WLNAE-LIVSDWR---P--VKLRRGVFYQGFVTWEDGSIDR 222 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHH-HTTEE-EEECCCC---S--SEEEEEEEETTEEEETTSCEEE
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHH-HhCCc-ccCCCCC---C--CcceEEEEeCCeeeccccchhh
Confidence 3457888899999988778999999999986 344444 55421 1211100 0 01111110 111
Q ss_pred CccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcc----------------------------------CcEEE
Q 011060 71 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI----------------------------------IASEA 116 (494)
Q Consensus 71 ~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~----------------------------------~~~~~ 116 (494)
...+...+.++ +.++.++||||+|++.++.++..|.+. ..+.+
T Consensus 223 ~~~~~~~~~~~---~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~ 299 (720)
T 2zj8_A 223 FSSWEELVYDA---IRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAF 299 (720)
T ss_dssp CSSTTHHHHHH---HHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEE
T ss_pred hhHHHHHHHHH---HhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeee
Confidence 12333343333 346789999999999999999988642 14889
Q ss_pred EeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEE----eC----CCCCHhHHHHHhhccCcCC--CCce
Q 011060 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE----LPNDPETFVHRSGRTGRAG--KEGT 186 (494)
Q Consensus 117 lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~----~~----~P~~~~~y~qr~GR~gR~g--~~g~ 186 (494)
+|++|++++|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.| ..|.
T Consensus 300 ~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~ 379 (720)
T 2zj8_A 300 HHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGE 379 (720)
T ss_dssp ECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEE
T ss_pred ecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCce
Confidence 999999999999999999999999999999999999999999998 77 6899999999999999988 5799
Q ss_pred EEEecChhhHHHHHHHHHHhcCCcccc
Q 011060 187 AILMFTSSQRRTVRSLERDVGCKFEFV 213 (494)
Q Consensus 187 ~i~l~~~~e~~~~~~l~~~~~~~~~~~ 213 (494)
|++++++.+. ...+++.+..+++.+
T Consensus 380 ~~~l~~~~~~--~~~~~~~~~~~~~~i 404 (720)
T 2zj8_A 380 GIIVSTSDDP--REVMNHYIFGKPEKL 404 (720)
T ss_dssp EEEECSSSCH--HHHHHHHTTSCCCCC
T ss_pred EEEEecCccH--HHHHHHHhcCCCCCc
Confidence 9999998762 223445554455444
No 38
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.88 E-value=1.1e-23 Score=239.89 Aligned_cols=207 Identities=18% Similarity=0.275 Sum_probs=154.3
Q ss_pred HHHHHHHHHHhC-----------CCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccH
Q 011060 6 FEEDVELILENL-----------PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK 74 (494)
Q Consensus 6 F~~~l~~Il~~~-----------~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k 74 (494)
|..+++.|+..+ +...|+++||||++.. ..++..++.++..+.+. ........+.+.++ ...+
T Consensus 190 ~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~--~~~~~~~~i~~~~~---~~~k 263 (1054)
T 1gku_B 190 ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIG--SSRITVRNVEDVAV---NDES 263 (1054)
T ss_dssp STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCS--CCEECCCCEEEEEE---SCCC
T ss_pred ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEcc--CcccCcCCceEEEe---chhH
Confidence 446777777776 4578999999999887 65555555555444332 22233455666665 2456
Q ss_pred HHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHccCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEe----ccccccc
Q 011060 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA----TDVAARG 150 (494)
Q Consensus 75 ~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVa----Td~~~~G 150 (494)
...|..+++.. +.++||||+|++.|+.+++.|...+.+..+||+| .+++++|++|+++|||| ||++++|
T Consensus 264 ~~~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rG 336 (1054)
T 1gku_B 264 ISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKNKFRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRG 336 (1054)
T ss_dssp TTTTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CC
T ss_pred HHHHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEec
Confidence 66666666543 5789999999999999999998668999999998 47889999999999999 9999999
Q ss_pred CCCCCc-cEEEEeCCC----------------------------------------------------------------
Q 011060 151 LDIPNV-DLIIHYELP---------------------------------------------------------------- 165 (494)
Q Consensus 151 idip~v-~~VI~~~~P---------------------------------------------------------------- 165 (494)
||+|+| ++||+|++|
T Consensus 337 IDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 416 (1054)
T 1gku_B 337 LDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVV 416 (1054)
T ss_dssp SCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEE
T ss_pred cccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeE
Confidence 999996 999999999
Q ss_pred -------CCHhHHHHHhhccCcCCCCc--eEEEecChhhHHHHHHHHHHhc---CCccccCCCChHHHHHHH
Q 011060 166 -------NDPETFVHRSGRTGRAGKEG--TAILMFTSSQRRTVRSLERDVG---CKFEFVSPPVVEDVLESS 225 (494)
Q Consensus 166 -------~~~~~y~qr~GR~gR~g~~g--~~i~l~~~~e~~~~~~l~~~~~---~~~~~~~~p~~~~~~~~~ 225 (494)
.|..+|+||+|||||.|..| .+++++...+...++.|++.++ .++..+..+..+++++..
T Consensus 417 ~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~i 488 (1054)
T 1gku_B 417 REGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKLYDIEFKSIDEVDFEKLSREL 488 (1054)
T ss_dssp ETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHTTSSCCCBCSCCCHHHHHHHH
T ss_pred eecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhhccCccccCCcCCHHHHHHhh
Confidence 78999999999999987665 3666666667778888887776 455556666666666543
No 39
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.5e-21 Score=220.54 Aligned_cols=198 Identities=22% Similarity=0.316 Sum_probs=146.3
Q ss_pred CCcCCHHHHHHHHHHhCCCCCcEEEEeecCChHHH--HHHHHHcCCCcEEEeccccccccccceEEEEEEcC--------
Q 011060 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVK--KLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-------- 70 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~--~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~-------- 70 (494)
|+++++...++.++..+|++.|+|+||||+|+... .........+..+...... +..++++++...
T Consensus 204 l~d~~rg~~~e~il~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~r----p~pl~~~~~~~~~~~~~~~~ 279 (1010)
T 2xgj_A 204 MRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR----PTPLQHYLFPAHGDGIYLVV 279 (1010)
T ss_dssp GGCTTTHHHHHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCC----SSCEEEEEEETTSSCCEEEE
T ss_pred hcccchhHHHHHHHHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC----cccceEEEEecCCcceeeee
Confidence 45677888889999999999999999999987532 2222233445544332111 122333333211
Q ss_pred -Ccc-----------------------------------H--------HHHHHHHHHHHc--cCCeEEEEeCChHHHHHH
Q 011060 71 -ATS-----------------------------------K--------RTILSDLITVYA--KGGKTIVFTQTKRDADEV 104 (494)
Q Consensus 71 -~~~-----------------------------------k--------~~~l~~ll~~~~--~~~~~iVF~~t~~~~~~l 104 (494)
... | ...+..++..+. ...++||||+|++.|+.+
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~l 359 (1010)
T 2xgj_A 280 DEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEEL 359 (1010)
T ss_dssp CTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHH
Confidence 000 1 122333444332 335899999999999999
Q ss_pred HHHHHc-cC---------------------------------------cEEEEeCCCCHHHHHHHHhhccCCcEEEEEec
Q 011060 105 SLALTS-II---------------------------------------ASEALHGDISQHQRERTLNGFRQGKFTVLVAT 144 (494)
Q Consensus 105 ~~~l~~-~~---------------------------------------~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaT 144 (494)
+..|.. .+ .+..+||+|++.+|+.+++.|++|.++|||||
T Consensus 360 a~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT 439 (1010)
T 2xgj_A 360 ALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFAT 439 (1010)
T ss_dssp HHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEe
Confidence 988864 22 27889999999999999999999999999999
Q ss_pred ccccccCCCCCccEEEE----eCC----CCCHhHHHHHhhccCcCCC--CceEEEecChh-hHHHHHHH
Q 011060 145 DVAARGLDIPNVDLIIH----YEL----PNDPETFVHRSGRTGRAGK--EGTAILMFTSS-QRRTVRSL 202 (494)
Q Consensus 145 d~~~~Gidip~v~~VI~----~~~----P~~~~~y~qr~GR~gR~g~--~g~~i~l~~~~-e~~~~~~l 202 (494)
+++++|||+|++++||+ ||. |.++..|+||+|||||.|. .|.||+++++. +...++.+
T Consensus 440 ~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 440 ETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp GGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred hHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 99999999999999999 999 8999999999999999996 59999999865 54455554
No 40
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.88 E-value=5e-22 Score=212.09 Aligned_cols=123 Identities=20% Similarity=0.338 Sum_probs=66.2
Q ss_pred cHHHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHcc-------------CcEEEEeCCCCHHHHHHHHhhccC-
Q 011060 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI-------------IASEALHGDISQHQRERTLNGFRQ- 135 (494)
Q Consensus 73 ~k~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~~-------------~~~~~lhg~~~~~~R~~~~~~F~~- 135 (494)
.|...|..+|... ..+.++||||++++.++.+++.|... .....+|++|++++|.+++++|++
T Consensus 372 ~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 451 (556)
T 4a2p_A 372 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 451 (556)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC----------------------------
T ss_pred hHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhccc
Confidence 3555566666443 45689999999999999999999742 234456788999999999999999
Q ss_pred CcEEEEEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHH
Q 011060 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 197 (494)
Q Consensus 136 g~~~iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~ 197 (494)
|+++|||||+++++|||+|+|++||+||+|+++..|+||+|| ||. ++|.+++|+++.+..
T Consensus 452 g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 452 KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp --CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred CceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 999999999999999999999999999999999999999999 999 899999999886643
No 41
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.88 E-value=8.9e-22 Score=213.88 Aligned_cols=174 Identities=20% Similarity=0.315 Sum_probs=132.7
Q ss_pred CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHHHHHHccCCeEEEEeCCh
Q 011060 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTK 98 (494)
Q Consensus 19 ~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~ 98 (494)
...|+++||||++...... .... +...........+ ...+......+..++..+......+.++||||+|+
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~--~~~~~r~~~l~~p---~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEM--VEQIIRPTGLLDP---LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSC--EEECCCTTCCCCC---EEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred cCCCEEEEecCCChhHHHh----hhCe--eeeeecccCCCCC---eEEEecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 4689999999998764322 1111 2221111111111 12222223334444555555555678999999999
Q ss_pred HHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEEeCC-----CCCHhHHH
Q 011060 99 RDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL-----PNDPETFV 172 (494)
Q Consensus 99 ~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~~~~-----P~~~~~y~ 172 (494)
..++.|++.|.+ ++.+..+|+++++.+|.+++++|++|+++|||||+++++|+|+|+|++||+++. |.+..+|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~i 535 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHH
Confidence 999999999985 789999999999999999999999999999999999999999999999999997 99999999
Q ss_pred HHhhccCcCCCCceEEEecChhhHHHHHHH
Q 011060 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 173 qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l 202 (494)
||+|||||. .+|.+++++++.+....+.+
T Consensus 536 Qr~GRagR~-~~G~~i~~~~~~~~~~~~~i 564 (661)
T 2d7d_A 536 QTIGRAARN-AEGRVIMYADKITKSMEIAI 564 (661)
T ss_dssp HHHHTTTTS-TTCEEEEECSSCCHHHHHHH
T ss_pred HHhCcccCC-CCCEEEEEEeCCCHHHHHHH
Confidence 999999998 78999999988665444433
No 42
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.88 E-value=4.1e-23 Score=226.99 Aligned_cols=129 Identities=22% Similarity=0.364 Sum_probs=81.1
Q ss_pred ccHHHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHc-c----CcEEEE--------eCCCCHHHHHHHHhhccC
Q 011060 72 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-I----IASEAL--------HGDISQHQRERTLNGFRQ 135 (494)
Q Consensus 72 ~~k~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~-~----~~~~~l--------hg~~~~~~R~~~~~~F~~ 135 (494)
..|...|..++... .++.++||||++++.++.|++.|.. . +.+..+ |++|++++|.+++++|++
T Consensus 379 ~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~ 458 (696)
T 2ykg_A 379 NPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 458 (696)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC---------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHh
Confidence 45777777777655 2457999999999999999999986 3 788888 569999999999999998
Q ss_pred -CcEEEEEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHH
Q 011060 136 -GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 136 -g~~~iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l 202 (494)
|+++|||||+++++|||+|+|++||+||+|+++++|+||+|| ||. +.|.+++|++..+......+
T Consensus 459 ~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 459 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp --CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred cCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999 998 78999999998776544444
No 43
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.88 E-value=7.5e-22 Score=217.58 Aligned_cols=205 Identities=23% Similarity=0.353 Sum_probs=140.1
Q ss_pred cCCHHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccce--------EEEEEEcCCc--
Q 011060 3 AVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGI--------KLYAISTTAT-- 72 (494)
Q Consensus 3 ~~GF~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i--------~~~~~~~~~~-- 72 (494)
+..|...++.|+..++ +.|+|+||||+++ ..++++ |+..+ .+...... ......+ ..........
T Consensus 159 ~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~-~l~~~-~~~~~~r~-~~l~~~~~~~~~~~~~~~~~~~~~~~~ 233 (715)
T 2va8_A 159 DPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAK-WLGAE-PVATNWRP-VPLIEGVIYPERKKKEYNVIFKDNTTK 233 (715)
T ss_dssp CTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHH-HHTCE-EEECCCCS-SCEEEEEEEECSSTTEEEEEETTSCEE
T ss_pred CcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHH-HhCCC-ccCCCCCC-CCceEEEEecCCcccceeeecCcchhh
Confidence 4577888888988887 8999999999986 345554 44422 12111100 0000000 0000011100
Q ss_pred ---cHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHcc-------------------------------------C
Q 011060 73 ---SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-------------------------------------I 112 (494)
Q Consensus 73 ---~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~-------------------------------------~ 112 (494)
.....+..+.+.+.+++++||||++++.++.++..|.+. .
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 313 (715)
T 2va8_A 234 KVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISK 313 (715)
T ss_dssp EEESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTT
T ss_pred hcccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhc
Confidence 011223334444456789999999999999999998742 2
Q ss_pred cEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEE----eC-------CCCCHhHHHHHhhccCcC
Q 011060 113 ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE-------LPNDPETFVHRSGRTGRA 181 (494)
Q Consensus 113 ~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~----~~-------~P~~~~~y~qr~GR~gR~ 181 (494)
.+.++|++|++++|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.
T Consensus 314 ~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~ 393 (715)
T 2va8_A 314 GVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRP 393 (715)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCT
T ss_pred CEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCC
Confidence 4889999999999999999999999999999999999999999999999 99 899999999999999998
Q ss_pred C--CCceEEEecChhhHHHHHHHHHHhcCCcccc
Q 011060 182 G--KEGTAILMFTSSQRRTVRSLERDVGCKFEFV 213 (494)
Q Consensus 182 g--~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~ 213 (494)
| ..|.||+++++.+. ..+.+++.+...++.+
T Consensus 394 g~~~~G~~~~l~~~~~~-~~~~~~~~l~~~~e~~ 426 (715)
T 2va8_A 394 GFDQIGESIVVVRDKED-VDRVFKKYVLSDVEPI 426 (715)
T ss_dssp TTCSCEEEEEECSCGGG-HHHHHHHTTSSCCCCC
T ss_pred CCCCCceEEEEeCCchH-HHHHHHHHHcCCCCCc
Confidence 8 58999999987653 1223334444344443
No 44
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.88 E-value=6.6e-22 Score=213.71 Aligned_cols=126 Identities=24% Similarity=0.287 Sum_probs=111.1
Q ss_pred cCCccHHHHHHHHHHH-HccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc
Q 011060 69 TTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 69 ~~~~~k~~~l~~ll~~-~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~ 146 (494)
.....|..+|...+.. +..+.++||||+|++.++.|+..|.+ ++++.+||+++.+.++..+.++|+.| .|+||||+
T Consensus 440 ~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnm 517 (922)
T 1nkt_A 440 KTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNM 517 (922)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETT
T ss_pred eCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecch
Confidence 3445677777666644 34567999999999999999999985 89999999999888888899999988 59999999
Q ss_pred ccccCCCCCc----------------------------------------------------cEEEEeCCCCCHhHHHHH
Q 011060 147 AARGLDIPNV----------------------------------------------------DLIIHYELPNDPETFVHR 174 (494)
Q Consensus 147 ~~~Gidip~v----------------------------------------------------~~VI~~~~P~~~~~y~qr 174 (494)
|+||+||+.+ .|||+|+.|.+...|.||
T Consensus 518 AgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr 597 (922)
T 1nkt_A 518 AGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQL 597 (922)
T ss_dssp CSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHH
T ss_pred hhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHH
Confidence 9999999975 599999999999999999
Q ss_pred hhccCcCCCCceEEEecChhhH
Q 011060 175 SGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 175 ~GR~gR~g~~g~~i~l~~~~e~ 196 (494)
+|||||.|.+|.+++|++..|.
T Consensus 598 ~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 598 RGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHTSSGGGCCEEEEEEEETTSH
T ss_pred hcccccCCCCeeEEEEechhHH
Confidence 9999999999999999987764
No 45
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.87 E-value=3.7e-23 Score=224.25 Aligned_cols=175 Identities=14% Similarity=0.181 Sum_probs=130.2
Q ss_pred HHHHHHHHHHhCC-CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHHHHH
Q 011060 6 FEEDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 84 (494)
Q Consensus 6 F~~~l~~Il~~~~-~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~ 84 (494)
+..++..+...++ .+.|+|+||||++..+..+.. .+...+.+.. ..+...+..++..+.
T Consensus 348 ~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~---~~~~i~~v~~---------------~~~~~~~~~~l~~l~-- 407 (673)
T 2wv9_A 348 SIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPD---TNSPVHDVSS---------------EIPDRAWSSGFEWIT-- 407 (673)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC---CSSCEEEEEC---------------CCCSSCCSSCCHHHH--
T ss_pred HHHHHHHHHHhccccCCcEEEEcCCCChhhhhhcc---cCCceEEEee---------------ecCHHHHHHHHHHHH--
Confidence 3344555555443 689999999999876443221 1111111110 011111112222222
Q ss_pred HccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEE--
Q 011060 85 YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH-- 161 (494)
Q Consensus 85 ~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~-- 161 (494)
....++||||++++.++.+++.|.. .+.+..+||+ +|++++++|++|+++|||||+++++|||+| +++|||
T Consensus 408 -~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g 481 (673)
T 2wv9_A 408 -DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCR 481 (673)
T ss_dssp -SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECC
T ss_pred -hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECC
Confidence 2568999999999999999999985 7899999994 799999999999999999999999999999 999998
Q ss_pred ------------------eCCCCCHhHHHHHhhccCcC-CCCceEEEec---ChhhHHHHHHHHHHh
Q 011060 162 ------------------YELPNDPETFVHRSGRTGRA-GKEGTAILMF---TSSQRRTVRSLERDV 206 (494)
Q Consensus 162 ------------------~~~P~~~~~y~qr~GR~gR~-g~~g~~i~l~---~~~e~~~~~~l~~~~ 206 (494)
|++|.+.++|+||+||+||. +++|.||+|+ ++.+...++.++..+
T Consensus 482 ~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 482 KSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp EECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred CcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 67899999999999999998 7999999996 566666666666654
No 46
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.87 E-value=3.1e-21 Score=209.72 Aligned_cols=176 Identities=22% Similarity=0.308 Sum_probs=134.1
Q ss_pred CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHHHHHHccCCeEEEEeCCh
Q 011060 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTK 98 (494)
Q Consensus 19 ~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~ 98 (494)
...|+++||||++...... . ...+...........+ ...+.........++..+......+.++||||+|+
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~--~~~~~~~~r~~~l~~p---~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 449 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----S--GRVVEQIIRPTGLLDP---LVRVKPTENQILDLMEGIRERAARGERTLVTVLTV 449 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----C--SEEEEECSCTTCCCCC---EEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred hcCCEEEEecCCCHHHHHh----h--hCeeeeeeccCCCCCC---eEEEecccchHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 3679999999998764222 1 1122222111111111 12222222333444455555455678999999999
Q ss_pred HHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEEeCC-----CCCHhHHH
Q 011060 99 RDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL-----PNDPETFV 172 (494)
Q Consensus 99 ~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~~~~-----P~~~~~y~ 172 (494)
..++.|++.|.+ ++.+..+|++|++.+|.+++++|++|+++|||||+++++|+|+|+|++||++|. |.+..+|+
T Consensus 450 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~i 529 (664)
T 1c4o_A 450 RMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 529 (664)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHH
T ss_pred HHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHH
Confidence 999999999985 789999999999999999999999999999999999999999999999999997 99999999
Q ss_pred HHhhccCcCCCCceEEEecChhhHHHHHHHHH
Q 011060 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (494)
Q Consensus 173 qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~ 204 (494)
||+|||||.+ +|.+++++++.+....+.+++
T Consensus 530 Qr~GRagR~~-~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 530 QTIGRAARNA-RGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp HHHGGGTTST-TCEEEEECSSCCHHHHHHHHH
T ss_pred HHHCccCcCC-CCEEEEEEcCCCHHHHHHHHH
Confidence 9999999984 899999999877666655543
No 47
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.86 E-value=4.7e-21 Score=202.97 Aligned_cols=167 Identities=21% Similarity=0.202 Sum_probs=132.7
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEE-EEEEcCCccHHHHHHHHHHH-HccCCeEEEEeCChH
Q 011060 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKR 99 (494)
Q Consensus 22 q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~-~~~~~~~iVF~~t~~ 99 (494)
++..||+|+..+..++.+.|-- .++.+. .+.+...+.+ ..+......|..+|...+.. +..+.++||||+|++
T Consensus 411 kL~GMTGTa~te~~Ef~~iY~l--~vv~IP---tnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e 485 (822)
T 3jux_A 411 KLAGMTGTAKTEESEFVQVYGM--EVVVIP---THKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIE 485 (822)
T ss_dssp EEEEEESSCGGGHHHHHHHSCC--CEEECC---CSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHH
T ss_pred HHeEECCCCchHHHHHHHHhCC--eEEEEC---CCCCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHH
Confidence 5778999999988888777643 233332 1222222222 23445556787777776654 346789999999999
Q ss_pred HHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCC--------CccEEEEeCCCCCHhH
Q 011060 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP--------NVDLIIHYELPNDPET 170 (494)
Q Consensus 100 ~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip--------~v~~VI~~~~P~~~~~ 170 (494)
.++.|+..|.+ ++++.+||++..+.++..+.++|+.+ .|+||||+|+||+||+ ++.+||++++|.+...
T Consensus 486 ~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~ 563 (822)
T 3jux_A 486 KSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRI 563 (822)
T ss_dssp HHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHH
T ss_pred HHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHH
Confidence 99999999985 89999999996666666677778776 4999999999999998 5679999999999999
Q ss_pred HHHHhhccCcCCCCceEEEecChhh
Q 011060 171 FVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 171 y~qr~GR~gR~g~~g~~i~l~~~~e 195 (494)
|+||+|||||+|.+|.+++|++..|
T Consensus 564 y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 564 DNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp HHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred HHHhhCccccCCCCeeEEEEechhH
Confidence 9999999999999999999998876
No 48
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.86 E-value=3.9e-23 Score=215.91 Aligned_cols=102 Identities=19% Similarity=0.318 Sum_probs=93.0
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEE-----
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----- 161 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~----- 161 (494)
.+++||||+|++.++.+++.|.. .+.+..+|++ +|++++++|++|+.+|||||+++++|||+|+ ++||+
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~ 264 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSV 264 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEEC
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccc
Confidence 57999999999999999999985 7899999995 7889999999999999999999999999999 99999
Q ss_pred ---------------eCCCCCHhHHHHHhhccCcCCC-CceEEEecChh
Q 011060 162 ---------------YELPNDPETFVHRSGRTGRAGK-EGTAILMFTSS 194 (494)
Q Consensus 162 ---------------~~~P~~~~~y~qr~GR~gR~g~-~g~~i~l~~~~ 194 (494)
|++|.+.++|+||+|||||.|+ +|.+++|+++.
T Consensus 265 ~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 265 KPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 7799999999999999999997 99999999875
No 49
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.86 E-value=1.1e-21 Score=209.25 Aligned_cols=128 Identities=24% Similarity=0.358 Sum_probs=89.2
Q ss_pred cHHHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHcc-----CcE--------EEEeCCCCHHHHHHHHhhccC-
Q 011060 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI-----IAS--------EALHGDISQHQRERTLNGFRQ- 135 (494)
Q Consensus 73 ~k~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~~-----~~~--------~~lhg~~~~~~R~~~~~~F~~- 135 (494)
.|...|..+|... ....++||||++++.++.+++.|... +.+ ..+||+|++++|.+++++|++
T Consensus 371 ~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 450 (555)
T 3tbk_A 371 PKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRAS 450 (555)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-------------------------
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcC
Confidence 3555555666443 24589999999999999999999852 333 445669999999999999999
Q ss_pred CcEEEEEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHH
Q 011060 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 136 g~~~iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l 202 (494)
++++|||||+++++|||+|+|++||+||+|+++..|+||+|| ||. +.|.+++|+++.+......+
T Consensus 451 g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 451 GDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp -CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999 998 89999999998776544333
No 50
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.86 E-value=4.1e-21 Score=200.35 Aligned_cols=122 Identities=34% Similarity=0.550 Sum_probs=108.6
Q ss_pred cHHHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeC--------CCCHHHHHHHHhhccCCcEEE
Q 011060 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHG--------DISQHQRERTLNGFRQGKFTV 140 (494)
Q Consensus 73 ~k~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg--------~~~~~~R~~~~~~F~~g~~~i 140 (494)
.|...|.+++..+ ..+.++||||++++.++.+++.|.. ++.+..+|| +|++++|.+++++|++++.+|
T Consensus 343 ~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~v 422 (494)
T 1wp9_A 343 PKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNV 422 (494)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSE
T ss_pred hHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceE
Confidence 4566666666654 3578999999999999999999986 789999999 999999999999999999999
Q ss_pred EEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhh
Q 011060 141 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 141 LVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (494)
||||+++++|||+|++++||+||+|+++..|+||+||++|.|. |.+++|+++.+
T Consensus 423 Lv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t 476 (494)
T 1wp9_A 423 LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGT 476 (494)
T ss_dssp EEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTS
T ss_pred EEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCC
Confidence 9999999999999999999999999999999999999999997 99999988754
No 51
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.85 E-value=1.6e-21 Score=203.25 Aligned_cols=164 Identities=18% Similarity=0.210 Sum_probs=122.1
Q ss_pred CCHHHHHHHHHHh-CCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHHH
Q 011060 4 VGFEEDVELILEN-LPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 82 (494)
Q Consensus 4 ~GF~~~l~~Il~~-~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll 82 (494)
+.+...+..+... .+++.|+|+||||+|..+..+ +..++..+.+... .+.. .+ ..+ ..++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~----~p~~--~~------~~~----~~~l 184 (451)
T 2jlq_A 124 PCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPF---PQSNSPIEDIERE----IPER--SW------NTG----FDWI 184 (451)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSS---CCCSSCEEEEECC----CCSS--CC------SSS----CHHH
T ss_pred cchHHHHHHHHHhhcCCCceEEEEccCCCccchhh---hcCCCceEecCcc----CCch--hh------HHH----HHHH
Confidence 3344444444332 356899999999998864332 3334444433210 0000 00 011 1222
Q ss_pred HHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEE
Q 011060 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (494)
Q Consensus 83 ~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~ 161 (494)
.. ..+++||||+|++.++.+++.|.+ ++.+..+|+++. ++++++|++|+.+|||||+++++|||+|+ ++|||
T Consensus 185 ~~--~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~ 257 (451)
T 2jlq_A 185 TD--YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVID 257 (451)
T ss_dssp HH--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEE
T ss_pred Hh--CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEE
Confidence 22 357999999999999999999985 788999999863 57999999999999999999999999999 99999
Q ss_pred eC--------------------CCCCHhHHHHHhhccCcCCC-CceEEEecCh
Q 011060 162 YE--------------------LPNDPETFVHRSGRTGRAGK-EGTAILMFTS 193 (494)
Q Consensus 162 ~~--------------------~P~~~~~y~qr~GR~gR~g~-~g~~i~l~~~ 193 (494)
|+ +|.+.++|+||+|||||.|+ +|.+++++..
T Consensus 258 ~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 258 PRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred CCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99 99999999999999999997 8899888754
No 52
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.85 E-value=4.9e-21 Score=219.41 Aligned_cols=180 Identities=17% Similarity=0.230 Sum_probs=145.2
Q ss_pred HHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHHHHHHcc
Q 011060 8 EDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK 87 (494)
Q Consensus 8 ~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~ 87 (494)
....++++.++.+.|+++||||+++....++...+.++..+... ......+..+.... .+..++..++..+..
T Consensus 739 ~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~----~~~r~~i~~~~~~~---~~~~i~~~il~~l~~ 811 (1151)
T 2eyq_A 739 VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP----PARRLAVKTFVREY---DSMVVREAILREILR 811 (1151)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCC----CCBCBCEEEEEEEC---CHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecC----CCCccccEEEEecC---CHHHHHHHHHHHHhc
Confidence 34566777777889999999999877777666555554333221 11122344433322 344556666777777
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc---cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEEeCC
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 164 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~~~~ 164 (494)
+.++||||++++.++.+++.|.+ .+.+..+||+|++.+|++++++|++++++|||||+++++|||+|++++||+++.
T Consensus 812 g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~ 891 (1151)
T 2eyq_A 812 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA 891 (1151)
T ss_dssp TCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTT
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCC
Confidence 89999999999999999999985 468999999999999999999999999999999999999999999999999988
Q ss_pred -CCCHhHHHHHhhccCcCCCCceEEEecChh
Q 011060 165 -PNDPETFVHRSGRTGRAGKEGTAILMFTSS 194 (494)
Q Consensus 165 -P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~ 194 (494)
+.+..+|+||+||+||.|+.|.||+++.+.
T Consensus 892 ~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 892 DHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp TSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 579999999999999999999999998764
No 53
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.85 E-value=2e-20 Score=211.31 Aligned_cols=116 Identities=27% Similarity=0.334 Sum_probs=96.6
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-cC---------------------------------------cEEEEeCCCCHHHH
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS-II---------------------------------------ASEALHGDISQHQR 126 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~---------------------------------------~~~~lhg~~~~~~R 126 (494)
...++||||+|++.|+.++..|.. .+ .+.++|++|++.+|
T Consensus 335 ~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R 414 (997)
T 4a4z_A 335 ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVK 414 (997)
T ss_dssp TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHH
Confidence 346999999999999999998864 22 47899999999999
Q ss_pred HHHHhhccCCcEEEEEecccccccCCCCCccEEE--------EeCCCCCHhHHHHHhhccCcCC--CCceEEEecC--hh
Q 011060 127 ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII--------HYELPNDPETFVHRSGRTGRAG--KEGTAILMFT--SS 194 (494)
Q Consensus 127 ~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI--------~~~~P~~~~~y~qr~GR~gR~g--~~g~~i~l~~--~~ 194 (494)
+.+++.|++|.++|||||+++++|||+|++.+|| +++.|.++.+|+||+|||||.| ..|.||+++. +.
T Consensus 415 ~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~ 494 (997)
T 4a4z_A 415 ELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPL 494 (997)
T ss_dssp HHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCC
T ss_pred HHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcc
Confidence 9999999999999999999999999999955555 2333449999999999999988 6788888883 33
Q ss_pred hHHHHHHH
Q 011060 195 QRRTVRSL 202 (494)
Q Consensus 195 e~~~~~~l 202 (494)
+...++.+
T Consensus 495 ~~~~~~~~ 502 (997)
T 4a4z_A 495 SIATFKEV 502 (997)
T ss_dssp CHHHHHHH
T ss_pred hHHHHHHH
Confidence 44555554
No 54
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.85 E-value=2.4e-20 Score=207.82 Aligned_cols=122 Identities=20% Similarity=0.346 Sum_probs=71.3
Q ss_pred cHHHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHcc-------------CcEEEEeCCCCHHHHHHHHhhccC-
Q 011060 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI-------------IASEALHGDISQHQRERTLNGFRQ- 135 (494)
Q Consensus 73 ~k~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~~-------------~~~~~lhg~~~~~~R~~~~~~F~~- 135 (494)
.|...|..+|... ..+.++||||++++.++.|+..|... ..+..+|++|++.+|.+++++|++
T Consensus 613 ~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~ 692 (797)
T 4a2q_A 613 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 692 (797)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC---------------------------
T ss_pred hHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhcc
Confidence 3555555566442 35689999999999999999999752 345567899999999999999999
Q ss_pred CcEEEEEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhH
Q 011060 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 136 g~~~iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (494)
|+++|||||+++++|||+|+|++||+||+|+++..|+||+|| ||. ++|.+++|+++.+.
T Consensus 693 g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 693 KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp -CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred CCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 999999999999999999999999999999999999999999 999 89999999988664
No 55
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.84 E-value=1.3e-20 Score=203.89 Aligned_cols=191 Identities=18% Similarity=0.173 Sum_probs=141.7
Q ss_pred CCcCCHHHHHHHHHHhCC-CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHH
Q 011060 1 MLAVGFEEDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILS 79 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~~~-~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 79 (494)
|++++|...++.++..++ ++.|++++|||. +.+..++... .....+.... .. .... +.... +.
T Consensus 251 l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~~i~~l~~~~-~~~~~v~~~~----r~-~~l~---~~~~~------l~ 314 (677)
T 3rc3_A 251 IRDPARGWAWTRALLGLCAEEVHLCGEPAAI-DLVMELMYTT-GEEVEVRDYK----RL-TPIS---VLDHA------LE 314 (677)
T ss_dssp GGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-HHHHHHHHHH-TCCEEEEECC----CS-SCEE---ECSSC------CC
T ss_pred cCCccchHHHHHHHHccCccceEEEeccchH-HHHHHHHHhc-CCceEEEEee----ec-chHH---HHHHH------HH
Confidence 568899999999999998 788999999996 3355555443 2333332110 00 0010 00000 00
Q ss_pred HHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccC--CcEEEEEecccccccCCCCCc
Q 011060 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ--GKFTVLVATDVAARGLDIPNV 156 (494)
Q Consensus 80 ~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~--g~~~iLVaTd~~~~Gidip~v 156 (494)
.+.. .....||||+|++.++.+++.|.+ .+.+..+||+|++++|+++++.|++ |+++|||||+++++|||+ +|
T Consensus 315 -~l~~--~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v 390 (677)
T 3rc3_A 315 -SLDN--LRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SI 390 (677)
T ss_dssp -SGGG--CCTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CB
T ss_pred -HHHh--cCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-Cc
Confidence 0111 134558999999999999999985 7899999999999999999999999 889999999999999999 89
Q ss_pred cEEEEeCC--------------CCCHhHHHHHhhccCcCCCC---ceEEEecChhhHHHHHHHHHHhcCCccc
Q 011060 157 DLIIHYEL--------------PNDPETFVHRSGRTGRAGKE---GTAILMFTSSQRRTVRSLERDVGCKFEF 212 (494)
Q Consensus 157 ~~VI~~~~--------------P~~~~~y~qr~GR~gR~g~~---g~~i~l~~~~e~~~~~~l~~~~~~~~~~ 212 (494)
++||++++ |.+..+|+||+|||||.|.. |.|++++.. +...++.+.......++.
T Consensus 391 ~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~-d~~~~~~~~~~~~~~i~~ 462 (677)
T 3rc3_A 391 RRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE-DLSLLKEILKRPVDPIRA 462 (677)
T ss_dssp SEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT-HHHHHHHHHHSCCCCCCC
T ss_pred cEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc-hHHHHHHHHhcCcchhhh
Confidence 99999999 88999999999999999954 677666554 545666666655555554
No 56
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.84 E-value=6.4e-21 Score=209.54 Aligned_cols=103 Identities=28% Similarity=0.518 Sum_probs=89.2
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-------cCcEEEEeCC--------CCHHHHHHHHhhccCCcEEEEEecccccccCC
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS-------IIASEALHGD--------ISQHQRERTLNGFRQGKFTVLVATDVAARGLD 152 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-------~~~~~~lhg~--------~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gid 152 (494)
+.++||||++++.++.|++.|.. ++.+..+||+ |++.+|.+++++|++|+++|||||+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 68999999999999999999986 4889999999 99999999999999999999999999999999
Q ss_pred CCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecCh
Q 011060 153 IPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 193 (494)
Q Consensus 153 ip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~ 193 (494)
+|+|++||+||+|+++..|+||+||+||.| .+++++.+
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~ 517 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAH 517 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEE
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEe
Confidence 999999999999999999999999976654 45555443
No 57
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.84 E-value=2.8e-20 Score=210.39 Aligned_cols=166 Identities=17% Similarity=0.255 Sum_probs=142.3
Q ss_pred CCccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc--cCcEEEEeCCCCHHHHHHHHhhccCCc--EEEEEecc
Q 011060 70 TATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGK--FTVLVATD 145 (494)
Q Consensus 70 ~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~--~~iLVaTd 145 (494)
....|...|..++.. .++.++||||++++.++.+++.|.. ++.+..+||+|++.+|++++++|++++ ++|||||+
T Consensus 486 ~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~ 564 (968)
T 3dmq_A 486 NFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE 564 (968)
T ss_dssp TTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC
T ss_pred CccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc
Confidence 345688888888876 3678999999999999999999984 789999999999999999999999998 99999999
Q ss_pred cccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHh--cCCccccCCCChHHHHH
Q 011060 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV--GCKFEFVSPPVVEDVLE 223 (494)
Q Consensus 146 ~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~--~~~~~~~~~p~~~~~~~ 223 (494)
++++|||+|++++||+||+|+++..|+||+||++|.|+++.+++++...+....+.|.+.+ +.++....+|...++.+
T Consensus 565 v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~~~~~~~i~~ 644 (968)
T 3dmq_A 565 IGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYD 644 (968)
T ss_dssp CTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSSCCSSHHHHHH
T ss_pred hhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCceecCCCCHHHHHH
Confidence 9999999999999999999999999999999999999988766665444333444555555 56666778899999999
Q ss_pred HHHHHHHHHhccC
Q 011060 224 SSAEQVVATLNGV 236 (494)
Q Consensus 224 ~~~~~~~~~l~~~ 236 (494)
...+.+...+...
T Consensus 645 ~~~~~l~~~l~~~ 657 (968)
T 3dmq_A 645 SVYNDLINYLASP 657 (968)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcc
Confidence 8888888877654
No 58
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.82 E-value=1.3e-19 Score=204.47 Aligned_cols=121 Identities=21% Similarity=0.348 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHcc-------------CcEEEEeCCCCHHHHHHHHhhccC-C
Q 011060 74 KRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI-------------IASEALHGDISQHQRERTLNGFRQ-G 136 (494)
Q Consensus 74 k~~~l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~~-------------~~~~~lhg~~~~~~R~~~~~~F~~-g 136 (494)
|...|..+|... ..+.++||||++++.++.|++.|... ..+..+||+|++.+|.+++++|++ |
T Consensus 614 K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g 693 (936)
T 4a2w_A 614 KLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK 693 (936)
T ss_dssp HHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccC
Confidence 444455555543 34589999999999999999999852 234566899999999999999999 9
Q ss_pred cEEEEEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecChhhH
Q 011060 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 137 ~~~iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (494)
+++|||||+++++|||+|+|++||+||+|+++..|+||+|| ||. +.|.+++|++..+.
T Consensus 694 ~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 694 DNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred CeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 99999999999999999999999999999999999999999 999 78999999887654
No 59
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.82 E-value=1.5e-20 Score=194.69 Aligned_cols=161 Identities=17% Similarity=0.198 Sum_probs=115.1
Q ss_pred CHHHHHHHHHHhC-CCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHHHH
Q 011060 5 GFEEDVELILENL-PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 83 (494)
Q Consensus 5 GF~~~l~~Il~~~-~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~ 83 (494)
.|...+..+.... +.+.|+|+||||+++.+..+.. .++..+.+.. ..+...... +..++.
T Consensus 108 ~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~---~~~~i~~~~~---------------~~~~~~~~~-~~~~l~ 168 (431)
T 2v6i_A 108 ASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPP---SNSPIIDEET---------------RIPDKAWNS-GYEWIT 168 (431)
T ss_dssp HHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCC---CSSCCEEEEC---------------CCCSSCCSS-CCHHHH
T ss_pred cHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcC---CCCceeeccc---------------cCCHHHHHH-HHHHHH
Confidence 3455555555443 5689999999999875332211 0111111110 011111111 112222
Q ss_pred HHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccE----
Q 011060 84 VYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL---- 158 (494)
Q Consensus 84 ~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~---- 158 (494)
. ..+++||||++++.++.+++.|.+ .+.+..+||+ +|++++++|++|+++|||||+++++|||+| +.+
T Consensus 169 ~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~ 241 (431)
T 2v6i_A 169 E--FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDP 241 (431)
T ss_dssp S--CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEEC
T ss_pred c--CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEec
Confidence 2 357999999999999999999986 7899999997 578899999999999999999999999999 654
Q ss_pred -------------EEEeCCCCCHhHHHHHhhccCcCCC-CceEEEec
Q 011060 159 -------------IIHYELPNDPETFVHRSGRTGRAGK-EGTAILMF 191 (494)
Q Consensus 159 -------------VI~~~~P~~~~~y~qr~GR~gR~g~-~g~~i~l~ 191 (494)
||+++.|.+.++|+||+||+||.|. .+.++++.
T Consensus 242 g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 242 RKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp CEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred CccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 6788999999999999999999984 55556655
No 60
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.82 E-value=1.1e-20 Score=207.58 Aligned_cols=171 Identities=18% Similarity=0.269 Sum_probs=126.7
Q ss_pred CCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccHHHHHHHHHHHHccCCeEEEEeCC
Q 011060 18 PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQT 97 (494)
Q Consensus 18 ~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t 97 (494)
....|+++||||+++....+. ++.+.....+..... ....+..+. ........++..+.+....+.+++|||++
T Consensus 514 ~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p~--~r~~i~~~~--~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ 587 (780)
T 1gm5_A 514 GKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMPP--GRKEVQTML--VPMDRVNEVYEFVRQEVMRGGQAFIVYPL 587 (780)
T ss_dssp SSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCCS--SCCCCEECC--CCSSTHHHHHHHHHHHTTTSCCBCCBCCC
T ss_pred CCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccCC--CCcceEEEE--eccchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 457899999999877654443 333322111111111 112232222 22333444555555555667899999997
Q ss_pred hH--------HHHHHHHHHHc----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEEeCCC
Q 011060 98 KR--------DADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP 165 (494)
Q Consensus 98 ~~--------~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~~~~P 165 (494)
.+ .++.+++.|.+ .+.+..+||+|++++|++++++|++|+++|||||+++++|||+|++++||++++|
T Consensus 588 ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~ 667 (780)
T 1gm5_A 588 IEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPE 667 (780)
T ss_dssp C--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCS
T ss_pred hhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCC
Confidence 64 57788888876 3578999999999999999999999999999999999999999999999999999
Q ss_pred C-CHhHHHHHhhccCcCCCCceEEEecChh
Q 011060 166 N-DPETFVHRSGRTGRAGKEGTAILMFTSS 194 (494)
Q Consensus 166 ~-~~~~y~qr~GR~gR~g~~g~~i~l~~~~ 194 (494)
. +...|+||+||+||.|++|.|++++++.
T Consensus 668 r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~ 697 (780)
T 1gm5_A 668 RFGLAQLHQLRGRVGRGGQEAYCFLVVGDV 697 (780)
T ss_dssp SSCTTHHHHHHHTSCCSSTTCEEECCCCSC
T ss_pred CCCHHHHHHHhcccCcCCCCCEEEEEECCC
Confidence 6 7899999999999999999999999843
No 61
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.80 E-value=6.6e-19 Score=207.66 Aligned_cols=187 Identities=15% Similarity=0.187 Sum_probs=135.5
Q ss_pred HHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCCccH-------HHHHHHHHHHH
Q 011060 13 ILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK-------RTILSDLITVY 85 (494)
Q Consensus 13 Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~k-------~~~l~~ll~~~ 85 (494)
|..+++++.|+|+||||+|+ ..++++..-.++..+....... . +..++.+......... ...+...+..+
T Consensus 1076 i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~-R-PvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~ 1152 (1724)
T 4f92_B 1076 ISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNV-R-PVPLELHIQGFNISHTQTRLLSMAKPVYHAITKH 1152 (1724)
T ss_dssp HHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGG-C-SSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHH
T ss_pred HHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCC-C-CCCeEEEEEeccCCCchhhhhhhcchHHHHHHHh
Confidence 34456789999999999986 4556654433333222221111 1 1223333222222221 12233445556
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHcc-----------------------------------CcEEEEeCCCCHHHHHHHH
Q 011060 86 AKGGKTIVFTQTKRDADEVSLALTSI-----------------------------------IASEALHGDISQHQRERTL 130 (494)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~~-----------------------------------~~~~~lhg~~~~~~R~~~~ 130 (494)
....++||||+|++.|+.++..|... ..+..+|++|++.+|..++
T Consensus 1153 ~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE 1232 (1724)
T 4f92_B 1153 SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVE 1232 (1724)
T ss_dssp CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHH
T ss_pred cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHH
Confidence 67789999999999999888766320 2478999999999999999
Q ss_pred hhccCCcEEEEEecccccccCCCCCccEEEE----e------CCCCCHhHHHHHhhccCcCCC--CceEEEecChhhHHH
Q 011060 131 NGFRQGKFTVLVATDVAARGLDIPNVDLIIH----Y------ELPNDPETFVHRSGRTGRAGK--EGTAILMFTSSQRRT 198 (494)
Q Consensus 131 ~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~----~------~~P~~~~~y~qr~GR~gR~g~--~g~~i~l~~~~e~~~ 198 (494)
+.|++|.++|||||+++++|||+|.+.+||. | ..|.++.+|+||+|||||+|. .|.|++++.+.+...
T Consensus 1233 ~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~ 1312 (1724)
T 4f92_B 1233 QLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDF 1312 (1724)
T ss_dssp HHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHH
T ss_pred HHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHH
Confidence 9999999999999999999999999999993 2 346799999999999999985 799999999888776
Q ss_pred HHHH
Q 011060 199 VRSL 202 (494)
Q Consensus 199 ~~~l 202 (494)
++++
T Consensus 1313 ~~~l 1316 (1724)
T 4f92_B 1313 FKKF 1316 (1724)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 62
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.78 E-value=3.3e-20 Score=194.54 Aligned_cols=117 Identities=23% Similarity=0.412 Sum_probs=102.4
Q ss_pred ccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHccCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccC
Q 011060 72 TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 151 (494)
Q Consensus 72 ~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gi 151 (494)
..|...|.+++... .+.++||||++++.++.+++.|. +..+||++++.+|++++++|++++++|||||+++++|+
T Consensus 334 ~~k~~~l~~~l~~~-~~~k~lvF~~~~~~~~~l~~~l~----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gl 408 (472)
T 2fwr_A 334 KNKIRKLREILERH-RKDKIIIFTRHNELVYRISKVFL----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGI 408 (472)
T ss_dssp SHHHHHHHHHHHHT-SSSCBCCBCSCHHHHHHHHHHTT----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSS
T ss_pred hHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHhC----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCc
Confidence 35667777877763 56899999999999999998874 66799999999999999999999999999999999999
Q ss_pred CCCCccEEEEeCCCCCHhHHHHHhhccCcCCCC-ce--EEEecCh
Q 011060 152 DIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE-GT--AILMFTS 193 (494)
Q Consensus 152 dip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~-g~--~i~l~~~ 193 (494)
|+|++++||++++|+++..|+||+||++|.|+. +. +|.+++.
T Consensus 409 dlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 409 DVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp CSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred ccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 999999999999999999999999999999844 34 4445543
No 63
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.77 E-value=7.9e-19 Score=170.23 Aligned_cols=124 Identities=15% Similarity=0.273 Sum_probs=97.2
Q ss_pred CCccHHHHHHHHHHHH-ccCCeEEEEeCChHHHHHHHHHHHc--cCcEEEEeCCCCHHHHHHHHhhccCC-cEE-EEEec
Q 011060 70 TATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQG-KFT-VLVAT 144 (494)
Q Consensus 70 ~~~~k~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~R~~~~~~F~~g-~~~-iLVaT 144 (494)
....|...|.+++..+ ..+.++||||+++..++.|...|.. ++.+..+||++++++|.+++++|+++ ..+ +||+|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 4467888888888765 3568999999999999999999985 78899999999999999999999988 666 79999
Q ss_pred ccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceE--EEecCh
Q 011060 145 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTA--ILMFTS 193 (494)
Q Consensus 145 d~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~--i~l~~~ 193 (494)
+++++|||++.+++||+||+||++..|+||+||++|.|+++.+ |.|++.
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~ 223 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV 223 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEET
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeC
Confidence 9999999999999999999999999999999999999976654 555554
No 64
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.77 E-value=1.1e-18 Score=184.82 Aligned_cols=184 Identities=11% Similarity=0.108 Sum_probs=128.2
Q ss_pred HHHHHHHHhCCCCCcEEEEeecCChHHHHHHH-HHcCCCcEEEecccc----ccccccceEEEEEEcCC-----------
Q 011060 8 EDVELILENLPPKRQSMLFSATMPSWVKKLSR-KYLDNPLNIDLVGNQ----DEKLAEGIKLYAISTTA----------- 71 (494)
Q Consensus 8 ~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~-~~~~~~~~v~~~~~~----~~~~~~~i~~~~~~~~~----------- 71 (494)
.+++.|++.+++..++|+||||++.....+.. ..+.++..+.+.... .......+....+..+.
T Consensus 240 ~~~~~il~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (510)
T 2oca_A 240 KSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTY 319 (510)
T ss_dssp HHHHHHGGGCTTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCH
T ss_pred ccHHHHHHhcccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccch
Confidence 56788889998889999999999776433221 112233322221100 00001111111111110
Q ss_pred ----------ccHHHHHHHHHHHH-ccCC-eEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcE
Q 011060 72 ----------TSKRTILSDLITVY-AKGG-KTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF 138 (494)
Q Consensus 72 ----------~~k~~~l~~ll~~~-~~~~-~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~ 138 (494)
..+...+.+++... ..+. ++||||+ .+.++.+++.|.+ ...+..+||+|++.+|++++++|++++.
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~ 398 (510)
T 2oca_A 320 QEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKG 398 (510)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCC
Confidence 11233344444433 2234 5566666 8889999999986 4689999999999999999999999999
Q ss_pred EEEEec-ccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceEEEecC
Q 011060 139 TVLVAT-DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 192 (494)
Q Consensus 139 ~iLVaT-d~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~ 192 (494)
+||||| +++++|+|+|++++||++++|+++..|+||+||+||.|+.+.++++++
T Consensus 399 ~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 399 IIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred CEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999 999999999999999999999999999999999999998775555544
No 65
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.76 E-value=2e-18 Score=203.60 Aligned_cols=184 Identities=20% Similarity=0.326 Sum_probs=131.4
Q ss_pred HhCCCCCcEEEEeecCChHHHHHHHHHcC-CCc-EEEeccccccccccceEEEEEEcCCccH---HHHHHHH----HHHH
Q 011060 15 ENLPPKRQSMLFSATMPSWVKKLSRKYLD-NPL-NIDLVGNQDEKLAEGIKLYAISTTATSK---RTILSDL----ITVY 85 (494)
Q Consensus 15 ~~~~~~~q~il~SAT~~~~v~~~~~~~~~-~~~-~v~~~~~~~~~~~~~i~~~~~~~~~~~k---~~~l~~l----l~~~ 85 (494)
..++++.|+|++|||+|+ +.++++ |+. ++. .+.+..... . +-.+++.++....... ...+..+ +..+
T Consensus 239 ~~~~~~~riI~LSATl~N-~~dvA~-wL~~~~~~~~~~~~~~~-R-PvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 314 (1724)
T 4f92_B 239 EMTQEDVRLIGLSATLPN-YEDVAT-FLRVDPAKGLFYFDNSF-R-PVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEH 314 (1724)
T ss_dssp HHHTCCCEEEEEECSCTT-HHHHHH-HTTCCHHHHEEECCGGG-C-SSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HhCCCCCcEEEEecccCC-HHHHHH-HhCCCCCCCeEEECCCC-c-cCccEEEEeccCCcchhhhhHHHHHHHHHHHHHH
Confidence 346788999999999986 455554 554 221 122221111 1 1234444443333322 2222222 2222
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHcc--------------------------------------CcEEEEeCCCCHHHHH
Q 011060 86 AKGGKTIVFTQTKRDADEVSLALTSI--------------------------------------IASEALHGDISQHQRE 127 (494)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~~--------------------------------------~~~~~lhg~~~~~~R~ 127 (494)
....++||||+|++.|+.++..|.+. ..+.++|++|++++|.
T Consensus 315 ~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~ 394 (1724)
T 4f92_B 315 AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRT 394 (1724)
T ss_dssp CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHH
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHH
Confidence 34578999999999999888877421 2378899999999999
Q ss_pred HHHhhccCCcEEEEEecccccccCCCCCccEEEE----eC------CCCCHhHHHHHhhccCcCC--CCceEEEecChhh
Q 011060 128 RTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE------LPNDPETFVHRSGRTGRAG--KEGTAILMFTSSQ 195 (494)
Q Consensus 128 ~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~----~~------~P~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e 195 (494)
.+++.|++|.++|||||+++++|||+|.+++||. |+ .|.++.+|+||+|||||.| ..|.+++++++.+
T Consensus 395 ~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~ 474 (1724)
T 4f92_B 395 LVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGE 474 (1724)
T ss_dssp HHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTT
T ss_pred HHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchh
Confidence 9999999999999999999999999999999995 54 3568999999999999987 5799999998877
Q ss_pred HHHHHHH
Q 011060 196 RRTVRSL 202 (494)
Q Consensus 196 ~~~~~~l 202 (494)
......+
T Consensus 475 ~~~~~~l 481 (1724)
T 4f92_B 475 LQYYLSL 481 (1724)
T ss_dssp CCHHHHH
T ss_pred HHHHHHH
Confidence 6555444
No 66
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.75 E-value=5.8e-18 Score=182.44 Aligned_cols=101 Identities=21% Similarity=0.302 Sum_probs=88.2
Q ss_pred HHHHccCCeEEEEeCChHHHHHHHHHHHccC---------cEEEEeCCCCHHHHHHHHhhccCCcEE---EEEecccccc
Q 011060 82 ITVYAKGGKTIVFTQTKRDADEVSLALTSII---------ASEALHGDISQHQRERTLNGFRQGKFT---VLVATDVAAR 149 (494)
Q Consensus 82 l~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~---------~~~~lhg~~~~~~R~~~~~~F~~g~~~---iLVaTd~~~~ 149 (494)
+.......++||||++++.++.+++.|.+.. .+..+||++++ +|++++++|++++.+ |||||+++++
T Consensus 433 l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~ 511 (590)
T 3h1t_A 433 MKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTT 511 (590)
T ss_dssp HHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTT
T ss_pred HHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhc
Confidence 3333445799999999999999999997522 27789999864 799999999998766 8999999999
Q ss_pred cCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCC
Q 011060 150 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 183 (494)
Q Consensus 150 Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~ 183 (494)
|||+|++++||++++|+++..|+||+||++|.+.
T Consensus 512 GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 512 GVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred CccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 9999999999999999999999999999999763
No 67
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.62 E-value=1e-15 Score=161.42 Aligned_cols=122 Identities=16% Similarity=0.279 Sum_probs=102.4
Q ss_pred ccHHHHHHHHHHHH-ccCCeEEEEeCChHHHHHHHHHHHc--cCcEEEEeCCCCHHHHHHHHhhccCC-cEE-EEEeccc
Q 011060 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQG-KFT-VLVATDV 146 (494)
Q Consensus 72 ~~k~~~l~~ll~~~-~~~~~~iVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~R~~~~~~F~~g-~~~-iLVaTd~ 146 (494)
..|...+.+++... ..+.++||||+++..++.++..|.. ++.+..+||++++++|++++++|+++ ..+ +||+|++
T Consensus 324 s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~ 403 (500)
T 1z63_A 324 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 403 (500)
T ss_dssp CHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCC
T ss_pred chhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeccc
Confidence 46777777777654 4567999999999999999999985 78899999999999999999999988 555 7999999
Q ss_pred ccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCceE--EEecCh
Q 011060 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTA--ILMFTS 193 (494)
Q Consensus 147 ~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~--i~l~~~ 193 (494)
+++|+|+|.+++||+||+|+++..|+||+||++|.|++..+ +.|+..
T Consensus 404 ~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~ 452 (500)
T 1z63_A 404 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV 452 (500)
T ss_dssp C-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEET
T ss_pred ccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeC
Confidence 99999999999999999999999999999999999976554 445544
No 68
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.61 E-value=6.4e-15 Score=159.97 Aligned_cols=134 Identities=12% Similarity=0.239 Sum_probs=112.4
Q ss_pred ccHHHHHHHHHHHHc--cCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcE---EEEEecc
Q 011060 72 TSKRTILSDLITVYA--KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF---TVLVATD 145 (494)
Q Consensus 72 ~~k~~~l~~ll~~~~--~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~---~iLVaTd 145 (494)
..|..+|..++..+. .+.++||||+++..++.+...|.. ++.+..+||++++++|++++++|+++.. .+||+|+
T Consensus 398 s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 477 (644)
T 1z3i_X 398 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 477 (644)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG
T ss_pred ChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecc
Confidence 457777888877653 468999999999999999999984 8999999999999999999999999865 4899999
Q ss_pred cccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCce--EEEecChh--hHHHHHHHHHH
Q 011060 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGT--AILMFTSS--QRRTVRSLERD 205 (494)
Q Consensus 146 ~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~--~i~l~~~~--e~~~~~~l~~~ 205 (494)
++++|||++.+++||+||+||++..|.|++||++|.|++.. +|.|++.. |...++.++++
T Consensus 478 a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K 541 (644)
T 1z3i_X 478 AGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHK 541 (644)
T ss_dssp GSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHH
T ss_pred cccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999996654 44455543 44444444443
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.55 E-value=2.8e-14 Score=158.70 Aligned_cols=137 Identities=18% Similarity=0.317 Sum_probs=116.0
Q ss_pred ccHHHHHHHHHHHHc-cCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcE---EEEEeccc
Q 011060 72 TSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF---TVLVATDV 146 (494)
Q Consensus 72 ~~k~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~---~iLVaTd~ 146 (494)
..|..+|..++..+. .+.++||||..+..++.|...|.. ++.+..+||.+++.+|.+++++|+++.. .+||+|.+
T Consensus 555 s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~a 634 (800)
T 3mwy_W 555 SGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRA 634 (800)
T ss_dssp CHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHH
T ss_pred ChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccc
Confidence 347778888887763 457999999999999999999984 8999999999999999999999998554 49999999
Q ss_pred ccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCCc--eEEEecChh--hHHHHHHHHHHhcC
Q 011060 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEG--TAILMFTSS--QRRTVRSLERDVGC 208 (494)
Q Consensus 147 ~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g--~~i~l~~~~--e~~~~~~l~~~~~~ 208 (494)
++.|||++.+++||+||+|+++..++||+||+.|.|++. .+|.|++.. |...++.++++...
T Consensus 635 gg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l 700 (800)
T 3mwy_W 635 GGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMIL 700 (800)
T ss_dssp HTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTS
T ss_pred ccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999654 445556543 55666666666543
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.51 E-value=2.4e-13 Score=153.28 Aligned_cols=134 Identities=11% Similarity=0.120 Sum_probs=99.7
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc-------------CcE-EEEeCC----------C----------CH----------
Q 011060 88 GGKTIVFTQTKRDADEVSLALTSI-------------IAS-EALHGD----------I----------SQ---------- 123 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~-------------~~~-~~lhg~----------~----------~~---------- 123 (494)
..++||||+++..|..+++.|.+. +.+ .++|++ + ++
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I 616 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAI 616 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHH
Confidence 358999999999999999998742 345 455542 2 32
Q ss_pred -------------------HHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEEeCCCCCHhHHHHHhhccCcCCCC
Q 011060 124 -------------------HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE 184 (494)
Q Consensus 124 -------------------~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~ 184 (494)
.+|..++++|++++++|||+||++.+|+|+|.+ +|+++|.|.+...|+|++||++|.+..
T Consensus 617 ~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 617 REYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDA 695 (1038)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCT
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCC
Confidence 248889999999999999999999999999999 788999999999999999999998753
Q ss_pred ----ceEEEecChhhHHHHHHHHHHhcCCccc-cCCCChHHHHH
Q 011060 185 ----GTAILMFTSSQRRTVRSLERDVGCKFEF-VSPPVVEDVLE 223 (494)
Q Consensus 185 ----g~~i~l~~~~e~~~~~~l~~~~~~~~~~-~~~p~~~~~~~ 223 (494)
|.++.|+.. .....+.+..+....... +..++.+++.+
T Consensus 696 ~K~~G~IVdf~~~-~~~l~~Al~~y~~~~~~~~~~~~~~~~~~~ 738 (1038)
T 2w00_A 696 TKTFGNIVTFRDL-ERSTIDAITLFGDKNTKNVVLEKSYTEYME 738 (1038)
T ss_dssp TCCSEEEEESSCC-HHHHHHHHHHTSCSSHHHHHBCCCHHHHHH
T ss_pred CCCcEEEEEcccc-HHHHHHHHHHHhCCCCcCceehhhhHHHHH
Confidence 667777664 334445555555444322 22344444444
No 71
>2e29_A ATP-dependent RNA helicase DDX50; ATP binding, hydrolase, nuclear protein, nucleotide-binding, RNA-binding, GUCT domain, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.5
Probab=98.92 E-value=2.2e-09 Score=84.62 Aligned_cols=89 Identities=22% Similarity=0.297 Sum_probs=72.4
Q ss_pred HcCCCCCCCCcccccCCCCceEEEeecCcccccCCCChhHHHHHhhhhcC-CCcCccccEEEeecCceeeEEeecCHHHH
Q 011060 267 LSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYP-TAADEIGKIHIIADDRVQGAVFDLPEEIA 345 (494)
Q Consensus 267 l~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~-~~~~~ig~i~i~~~~~~~gs~fdvp~~~a 345 (494)
++|+++ +++|||+++.++++|+.+..+.+ .-.|..++.+|.+..+ ...++|++|.++++. +|++||||++.+
T Consensus 2 ~SG~te-~~~RSLLt~~eG~~Tl~l~~~~~----i~~~~y~w~~L~~~l~e~~~~~v~~m~l~~d~--~GavFDvP~e~~ 74 (92)
T 2e29_A 2 SSGSSG-FEPRSLITSDKGFVTMTLESLEE----IQDVSCAWKELNRKLSSNAVSQITRMCLLKGN--MGVCFDVPTTES 74 (92)
T ss_dssp CCSCSC-CCCCCCCCCCCCEEEEEEECSSC----CSSTHHHHHHHHHHSCHHHHTTCEEEEECTTS--SEEEEEEEHHHH
T ss_pred CCCcCC-CCCcccccCCCCCEEEEEecCCc----ccchHHHHHHHHHhcCHHHHhhhCeEEEecCC--CEEEEECcHHHH
Confidence 467777 55699999999999999988763 4578899999998554 455689999999985 599999999999
Q ss_pred HHHHhhcCCCCCceEee
Q 011060 346 KELLNKQIPPGNTISKI 362 (494)
Q Consensus 346 ~~~~~~~~~~~~~i~~~ 362 (494)
+++++.+.+..++++++
T Consensus 75 ~~~~~~~~~~~~~l~v~ 91 (92)
T 2e29_A 75 ERLQAEWHDSDWILSVP 91 (92)
T ss_dssp HHHHHHCCSSSCEEECC
T ss_pred HHHHhhCCCCceEEEec
Confidence 99999987644666554
No 72
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=98.71 E-value=1.1e-08 Score=67.52 Aligned_cols=37 Identities=24% Similarity=0.579 Sum_probs=30.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCC
Q 011060 418 SRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSSRSFGGACFNCGKSGHRASECPN 494 (494)
Q Consensus 418 ~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~c~~c~~~gh~~~~cp~ 494 (494)
|++|++.||.+++|+... ...||+||++||+|+|||+
T Consensus 3 C~~Cg~~GH~a~~C~~~~----------------------------------------~~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 3 CFNCGKPGHTARMCRQPR----------------------------------------QEGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp CTTTCCBSSCTTTCCSCC----------------------------------------CSSCTTTCCSSSCTTTSCC
T ss_pred eeccCCCCcccccCCCCC----------------------------------------CCccccCCCCCCccCcCcC
Confidence 788999999999886431 0129999999999999996
No 73
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=98.70 E-value=4.9e-09 Score=76.45 Aligned_cols=47 Identities=19% Similarity=0.296 Sum_probs=16.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCC
Q 011060 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSSRSFGGACFNCGKSGHRASECPN 494 (494)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~c~~c~~~gh~~~~cp~ 494 (494)
+.||+|++.||.+++|+....... . ......||+|+++||||+|||+
T Consensus 2 ~~Cf~Cg~~GH~a~~C~~~~~~~~-------------------~-------------~~~~~~C~~Cg~~GH~ar~C~~ 48 (60)
T 1cl4_A 2 GSCFKCGKKGHFAKNCHEHAHNNA-------------------E-------------PKVPGLCPRCKRGKHWANECKS 48 (60)
T ss_dssp -----------------------------------------------------------CCCSCSSCSSCSSCSTTCCC
T ss_pred CccccCCCCCcCHhhCcCCCCCcc-------------------c-------------cCCCcceeECCCCCCccCcCCC
Confidence 469999999999999975422100 0 0112349999999999999995
No 74
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=98.69 E-value=5.6e-09 Score=62.12 Aligned_cols=18 Identities=44% Similarity=1.198 Sum_probs=16.4
Q ss_pred CccccCCCCccccCCCCC
Q 011060 477 GACFNCGKSGHRASECPN 494 (494)
Q Consensus 477 ~~c~~c~~~gh~~~~cp~ 494 (494)
..||+||++||||||||+
T Consensus 3 ~~Cf~CG~~GH~ardC~~ 20 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKE 20 (26)
T ss_dssp CBCTTTCCBSSCTTTTTC
T ss_pred CeeEeCCCCCcccccCCC
Confidence 459999999999999985
No 75
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=98.66 E-value=1.4e-08 Score=66.15 Aligned_cols=36 Identities=19% Similarity=0.483 Sum_probs=30.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCC
Q 011060 417 SSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSSRSFGGACFNCGKSGHRASECPN 494 (494)
Q Consensus 417 ~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~c~~c~~~gh~~~~cp~ 494 (494)
.|++|++.||.+++|+.. ..||+|+++||+|+|||+
T Consensus 2 ~C~~Cg~~GH~~~~C~~~------------------------------------------~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAP------------------------------------------KVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp CBSSSCCSSCCTTTSSCB------------------------------------------TTCSSCCCTTGGGGTTCC
T ss_pred cccccCCCCcchhhCcCc------------------------------------------CeEccCCCcCCccCcCcC
Confidence 378899999999888632 119999999999999996
No 76
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.61 E-value=1.7e-06 Score=94.02 Aligned_cols=167 Identities=20% Similarity=0.213 Sum_probs=116.0
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEE-EEEcCCccHHHH-HHHHHHHHccCCeEEEEeCChH
Q 011060 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLY-AISTTATSKRTI-LSDLITVYAKGGKTIVFTQTKR 99 (494)
Q Consensus 22 q~il~SAT~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~-~~~~~~~~k~~~-l~~ll~~~~~~~~~iVF~~t~~ 99 (494)
.+.-||.|...+..++.+.|--+ ++.+. .+.+.....+- .+......|..+ +.++...+..+.++||+|.|.+
T Consensus 380 kLsGMTGTA~tE~~Ef~~iY~l~--Vv~IP---Tn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe 454 (997)
T 2ipc_A 380 KRAGMTGTAKTEEKEFQEIYGMD--VVVVP---TNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIE 454 (997)
T ss_dssp EEEEEESSCGGGHHHHHHHHCCC--EEECC---CSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHH
T ss_pred HheecCCCchHHHHHHHHHhCCC--EEEcC---CCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHH
Confidence 56679999988877777777544 23332 12222222221 222334455554 4555566677899999999999
Q ss_pred HHHHHHHHHH----------------------------------------------------------------------
Q 011060 100 DADEVSLALT---------------------------------------------------------------------- 109 (494)
Q Consensus 100 ~~~~l~~~l~---------------------------------------------------------------------- 109 (494)
..+.|+..|.
T Consensus 455 ~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 534 (997)
T 2ipc_A 455 KSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAV 534 (997)
T ss_dssp HHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhh
Confidence 9999999887
Q ss_pred ------c-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCc-------------------c------
Q 011060 110 ------S-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV-------------------D------ 157 (494)
Q Consensus 110 ------~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v-------------------~------ 157 (494)
+ +++..+|.+.-...+-+.|-++=+.| .|-|||++|.||.||.-- .
T Consensus 535 ~~~~~~~~gI~H~VLNAK~he~EAeIIAqAG~~G--aVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~ 612 (997)
T 2ipc_A 535 HTLAVLRQGIPHQVLNAKHHAREAEIVAQAGRSK--TVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELF 612 (997)
T ss_dssp HHHHHHHHCCCCCEECSSSHHHHHHHHHTTTSTT--CEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHH
T ss_pred hhhHHHHcCCCeeeccccchHHHHHHHHhcCCCC--eEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccc
Confidence 2 45566676664333433344443444 489999999999999521 1
Q ss_pred -------------------------------------------------EEEEeCCCCCHhHHHHHhhccCcCCCCceEE
Q 011060 158 -------------------------------------------------LIIHYELPNDPETFVHRSGRTGRAGKEGTAI 188 (494)
Q Consensus 158 -------------------------------------------------~VI~~~~P~~~~~y~qr~GR~gR~g~~g~~i 188 (494)
|||-...+.|..-=.|-.||+||.|.+|.+.
T Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSr 692 (997)
T 2ipc_A 613 IKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSR 692 (997)
T ss_dssp HHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEE
T ss_pred cccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeE
Confidence 7999999999999999999999999999998
Q ss_pred EecChhh
Q 011060 189 LMFTSSQ 195 (494)
Q Consensus 189 ~l~~~~e 195 (494)
++++-.|
T Consensus 693 F~LSLeD 699 (997)
T 2ipc_A 693 FYVSFDD 699 (997)
T ss_dssp EEEESSS
T ss_pred EEEECCh
Confidence 8877655
No 77
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=98.59 E-value=2.5e-08 Score=65.28 Aligned_cols=19 Identities=37% Similarity=0.956 Sum_probs=17.0
Q ss_pred CCccccCCCCccccCCCCC
Q 011060 476 GGACFNCGKSGHRASECPN 494 (494)
Q Consensus 476 ~~~c~~c~~~gh~~~~cp~ 494 (494)
...||+|||.||||+|||+
T Consensus 10 ~~~C~~Cgk~GH~ardCP~ 28 (40)
T 1a6b_B 10 RDQCAYCKEKGHWAKDCPK 28 (40)
T ss_dssp SSSCSSSCCTTCCTTSCSS
T ss_pred CCeeeECCCCCcchhhCcC
Confidence 3569999999999999995
No 78
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=98.56 E-value=4.2e-08 Score=68.13 Aligned_cols=39 Identities=23% Similarity=0.597 Sum_probs=32.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCC
Q 011060 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSSRSFGGACFNCGKSGHRASECPN 494 (494)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~c~~c~~~gh~~~~cp~ 494 (494)
..|++||+.||.+++|+... ...||+||++||+|+|||+
T Consensus 7 ~~C~~Cg~~GH~a~~C~~~~----------------------------------------~~~C~~Cg~~GH~~~~C~~ 45 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRAPR----------------------------------------RQGCWKCGKTGHVMAKCPE 45 (49)
T ss_dssp CBCTTTCCBTCCTTTCCCSS----------------------------------------CCSCSSSCCSSCCGGGCCS
T ss_pred CeeeecCCCCcChhhCcCCC----------------------------------------CCeeCcCCCcCCccCCCcC
Confidence 46999999999999986431 0129999999999999995
No 79
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.55 E-value=7.6e-08 Score=70.62 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=32.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCC
Q 011060 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSSRSFGGACFNCGKSGHRASECPN 494 (494)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~c~~c~~~gh~~~~cp~ 494 (494)
..||+|++.||.+++|+.... ...||+|+++||+|+|||+
T Consensus 8 ~~C~~Cg~~GH~a~~C~~~~~---------------------------------------~~~C~~Cg~~GH~ar~Cp~ 47 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKLPPQ---------------------------------------PKKCHFCQSISHMVASCPL 47 (63)
T ss_dssp CCCSSSCCSSSCTTTCCSCCC---------------------------------------SSCCTTTCCSSSCTTTCTG
T ss_pred CcccccCCCCcChhhCCCCCC---------------------------------------CCccCCcCCcCCccCcCCC
Confidence 569999999999999964310 0129999999999999995
No 80
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=98.53 E-value=7.7e-08 Score=72.75 Aligned_cols=16 Identities=31% Similarity=0.818 Sum_probs=15.5
Q ss_pred cccCCCCccccCCCCC
Q 011060 479 CFNCGKSGHRASECPN 494 (494)
Q Consensus 479 c~~c~~~gh~~~~cp~ 494 (494)
||+|+++||+|+|||+
T Consensus 49 C~~Cg~~GH~ar~Cp~ 64 (74)
T 2li8_A 49 CHFCQSISHMVASCPL 64 (74)
T ss_dssp CTTTCCTTSCGGGCTT
T ss_pred cCCcCCcCCccCcCcC
Confidence 9999999999999995
No 81
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=98.51 E-value=7.2e-08 Score=70.35 Aligned_cols=44 Identities=20% Similarity=0.295 Sum_probs=33.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCC
Q 011060 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSSRSFGGACFNCGKSGHRASECPN 494 (494)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~c~~c~~~gh~~~~cp~ 494 (494)
..||+|++.||.+++|+.....+ .....||+|+++||+|+|||+
T Consensus 5 ~~C~~Cg~~GH~a~~C~~~~~~~-----------------------------------~~~~~C~~Cg~~GH~ar~C~~ 48 (61)
T 2ihx_A 5 GLCYTCGSPGHYQAQCPKKRKSG-----------------------------------NSRERCQLCNGMGHNAKQCRK 48 (61)
T ss_dssp TBCSSSCCBTCCGGGCTTTTSSS-----------------------------------CCCSBCTTTCCBSSCGGGCCC
T ss_pred CcccccCCCCeehhhCcCCcCCC-----------------------------------CCCCeeCCCCCCCCCcCCCcC
Confidence 56999999999999997542110 011349999999999999995
No 82
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.45 E-value=8.2e-07 Score=94.13 Aligned_cols=75 Identities=16% Similarity=0.287 Sum_probs=49.4
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHccCcEEEEeCCCCHHHHHHHHhhccCCcEEEEE--ecccccccCCCCC----ccEEE
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV--ATDVAARGLDIPN----VDLII 160 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLV--aTd~~~~Gidip~----v~~VI 160 (494)
.++.+|||++|...++.+++.|.. +. ...++.. .+|++++++|+++. .||+ +|+.+++|||+|+ +++||
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~-~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vi 457 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG-IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLV 457 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT-SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc-Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEE
Confidence 457899999999999999988864 33 3456553 46888999999865 5666 8999999999997 89999
Q ss_pred EeCCCC
Q 011060 161 HYELPN 166 (494)
Q Consensus 161 ~~~~P~ 166 (494)
++++|.
T Consensus 458 i~~lPf 463 (540)
T 2vl7_A 458 LAGLPY 463 (540)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999884
No 83
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=98.45 E-value=7.5e-08 Score=68.75 Aligned_cols=39 Identities=21% Similarity=0.515 Sum_probs=31.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCC
Q 011060 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSSRSFGGACFNCGKSGHRASECPN 494 (494)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~c~~c~~~gh~~~~cp~ 494 (494)
..|++|+..||.+++|+... ...||+||++||+|+|||+
T Consensus 13 ~~C~~Cg~~GH~a~~C~~~~----------------------------------------~~~C~~Cg~~GH~~~~C~~ 51 (55)
T 1a1t_A 13 VKCFNCGKEGHIAKNCRAPR----------------------------------------KKGCWKCGKEGHQMKDCTE 51 (55)
T ss_dssp CBCTTTCCBSSCGGGCSSCS----------------------------------------CCBCTTTCCBSSCGGGCSS
T ss_pred cceeeeCCCCcChhhcCCCC----------------------------------------CCEeCCCCCcCCccCCCcC
Confidence 46999999999999986431 0129999999999999995
No 84
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=98.36 E-value=1.6e-07 Score=66.43 Aligned_cols=19 Identities=37% Similarity=0.956 Sum_probs=17.0
Q ss_pred CCccccCCCCccccCCCCC
Q 011060 476 GGACFNCGKSGHRASECPN 494 (494)
Q Consensus 476 ~~~c~~c~~~gh~~~~cp~ 494 (494)
...||+|||.||||+|||+
T Consensus 23 ~~~C~~Cge~GH~ardCp~ 41 (56)
T 1u6p_A 23 RDQCAYCKEKGHWAKDCPK 41 (56)
T ss_dssp TTBCSSSCCBSSCGGGCTT
T ss_pred CCcceeCCCCCcccccCcC
Confidence 3469999999999999995
No 85
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=98.34 E-value=2e-07 Score=72.06 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=36.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCC-CCCCCccccCCCCccccCCCCC
Q 011060 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSS-RSFGGACFNCGKSGHRASECPN 494 (494)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~-~~~~~~c~~c~~~gh~~~~cp~ 494 (494)
-.|+.|+..||.+++|+... .++.++..++ . ++++. ......||+||++||+++|||+
T Consensus 6 ~~C~~Cg~~GH~~~~Cp~~~-----rcY~c~~~gh-----~-----------~~~c~~p~~~~~CYnCG~~GH~~rdC~~ 64 (83)
T 3nyb_B 6 VQCTLCKSKKHSKERCPSIW-----RAYILVDDNE-----K-----------AKPKVLPFHTIYCYNCGGKGHFGDDCKE 64 (83)
T ss_dssp -CCSSSCCSSSCGGGCGGGT-----CCCCBC-----------------------------CCCBCSSSSCBSSCGGGCSS
T ss_pred CCCCCCCCCCCccccCCCcc-----cccccccCCc-----c-----------cccccCCCCCCeecccCCCCcCcccCCc
Confidence 35899999999999997542 3455443221 1 11111 0123469999999999999995
No 86
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=98.30 E-value=2.7e-07 Score=79.95 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=32.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCC
Q 011060 416 RSSRSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDSSRSFGGACFNCGKSGHRASECPN 494 (494)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~c~~c~~~gh~~~~cp~ 494 (494)
..||+||..||.+++|+.... ...||+|+++||+++|||+
T Consensus 98 ~~C~~Cg~~GH~a~~C~~~~~---------------------------------------~~~C~~Cg~~GH~~r~Cp~ 137 (148)
T 3ts2_A 98 DRCYNCGGLDHHAKECKLPPQ---------------------------------------PKKCHFCQSINHMVASCPL 137 (148)
T ss_dssp CCCTTTCCSSCCGGGCCSCCC---------------------------------------CCCCTTTCCSSCCGGGCTT
T ss_pred CcccEeCCccchhhhCCCCCC---------------------------------------CCcccccCCcCCEeccCcC
Confidence 569999999999999974311 0129999999999999996
No 87
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=98.29 E-value=6.6e-07 Score=68.49 Aligned_cols=61 Identities=16% Similarity=0.275 Sum_probs=52.5
Q ss_pred eEEEeecCcccccCCCChhHHHHHhhhhcCCCcCccccEEEeecCceeeEEeecCHHHHHHHHhhcCC
Q 011060 287 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 354 (494)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~i~~~~~~~gs~fdvp~~~a~~~~~~~~~ 354 (494)
+|++++.++ ++++.|.+|+++|++..++..++||+|++++++ +||++|.+.++.+++.+..
T Consensus 1 ~~~~i~~Gr---k~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~~----s~v~v~~~~~~~~~~~l~~ 61 (76)
T 2g0c_A 1 MKLYFNGGK---KKKIRAVDFVGTIAKIDGVSADDIGIITIMDNA----SYVEILNGKGPHVLKVMKN 61 (76)
T ss_dssp CEEEESCCC---C----CHHHHHHHHTSTTCCGGGEEEEEECSSC----EEEEECTTCHHHHHHHHTT
T ss_pred CEEEEeCCC---ccCCCHHHHHHHHHHccCCChhhccEEEEeCCc----EEEEECHHHHHHHHHHhcc
Confidence 378899998 889999999999999999999999999999998 7999999999999988754
No 88
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=98.26 E-value=2.2e-07 Score=56.71 Aligned_cols=18 Identities=50% Similarity=1.145 Sum_probs=16.1
Q ss_pred CccccCCCCccccCCCCC
Q 011060 477 GACFNCGKSGHRASECPN 494 (494)
Q Consensus 477 ~~c~~c~~~gh~~~~cp~ 494 (494)
..|||||++||+|+|||.
T Consensus 7 ~~C~nCgk~GH~ar~C~~ 24 (29)
T 1nc8_A 7 IRCWNCGKEGHSARQCRA 24 (29)
T ss_dssp CBCTTTSCBSSCGGGCCS
T ss_pred CEEEECCccccCHhHCcc
Confidence 359999999999999984
No 89
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=98.22 E-value=3.8e-06 Score=70.71 Aligned_cols=20 Identities=35% Similarity=0.908 Sum_probs=17.8
Q ss_pred CCCccccCCCCccccCCCCC
Q 011060 475 FGGACFNCGKSGHRASECPN 494 (494)
Q Consensus 475 ~~~~c~~c~~~gh~~~~cp~ 494 (494)
....||+|++.||||+|||+
T Consensus 104 ~~~~Cy~Cg~~GH~a~dCp~ 123 (124)
T 2lli_A 104 HTIYCYNCGGKGHFGDDCKE 123 (124)
T ss_dssp CCCCTTTTSSSCTTTTTSCC
T ss_pred CCCCcCCCCCCCcCcccCcC
Confidence 34689999999999999996
No 90
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.11 E-value=1e-06 Score=61.94 Aligned_cols=18 Identities=56% Similarity=1.364 Sum_probs=16.3
Q ss_pred CCccccCCCCccccCCCC
Q 011060 476 GGACFNCGKSGHRASECP 493 (494)
Q Consensus 476 ~~~c~~c~~~gh~~~~cp 493 (494)
+..||+||++|||++|||
T Consensus 7 ~~~C~kCGk~GH~~k~Cp 24 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCP 24 (55)
T ss_dssp SCCCTTTCCTTSCGGGCS
T ss_pred CCccccCCCcCcccccCC
Confidence 345999999999999999
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.91 E-value=0.00013 Score=78.48 Aligned_cols=77 Identities=22% Similarity=0.283 Sum_probs=53.9
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHccCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc--cccccCCCCC--ccEEEEe
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD--VAARGLDIPN--VDLIIHY 162 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd--~~~~Gidip~--v~~VI~~ 162 (494)
.++.+|||+++....+.+++.|. .+... ..-+++..++..++++|+ ++-.||++|. .+.+|||+|+ ...||..
T Consensus 447 ~~g~~lvlF~Sy~~l~~v~~~l~-~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~ 523 (620)
T 4a15_A 447 VKKNTIVYFPSYSLMDRVENRVS-FEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILA 523 (620)
T ss_dssp HCSCEEEEESCHHHHHHHTSSCC-SCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEES
T ss_pred CCCCEEEEeCCHHHHHHHHHHHH-hcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEE
Confidence 36789999999999999988876 33222 444555678999999999 7788999985 9999999985 5678888
Q ss_pred CCCC
Q 011060 163 ELPN 166 (494)
Q Consensus 163 ~~P~ 166 (494)
.+|.
T Consensus 524 ~lPf 527 (620)
T 4a15_A 524 GLPF 527 (620)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7774
No 92
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=97.87 E-value=1.8e-05 Score=66.57 Aligned_cols=19 Identities=26% Similarity=0.653 Sum_probs=16.9
Q ss_pred CCccccCCCCccccCCCCC
Q 011060 476 GGACFNCGKSGHRASECPN 494 (494)
Q Consensus 476 ~~~c~~c~~~gh~~~~cp~ 494 (494)
+..||+|++.||+|+|||+
T Consensus 64 ~~~C~~Cg~~GH~~~~Cp~ 82 (124)
T 2lli_A 64 KVQCTLCKSKKHSKERCPS 82 (124)
T ss_dssp CCSSSSSCSSCCCTTTCCC
T ss_pred CccCCCCCcCCcchhhCCC
Confidence 3579999999999999995
No 93
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=97.68 E-value=1.3e-05 Score=52.61 Aligned_cols=17 Identities=59% Similarity=1.341 Sum_probs=15.7
Q ss_pred ccccCCCCccccCCCCC
Q 011060 478 ACFNCGKSGHRASECPN 494 (494)
Q Consensus 478 ~c~~c~~~gh~~~~cp~ 494 (494)
.||+|+++||+|+|||+
T Consensus 2 ~C~~Cg~~GH~a~~C~~ 18 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQ 18 (39)
T ss_dssp BCTTTCCBSSCTTTCCS
T ss_pred eeeccCCCCcccccCCC
Confidence 49999999999999984
No 94
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=97.64 E-value=1.6e-05 Score=51.42 Aligned_cols=17 Identities=53% Similarity=1.339 Sum_probs=15.7
Q ss_pred ccccCCCCccccCCCCC
Q 011060 478 ACFNCGKSGHRASECPN 494 (494)
Q Consensus 478 ~c~~c~~~gh~~~~cp~ 494 (494)
.||+|+++||+|+|||+
T Consensus 2 ~C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRA 18 (37)
T ss_dssp CBSSSCCSSCCTTTSSC
T ss_pred cccccCCCCcchhhCcC
Confidence 39999999999999985
No 95
>3i31_A Heat resistant RNA dependent ATPase; RNA helicase, RNA recognition motif, ATP-binding, helicase, nucleotide-binding; 1.80A {Thermus thermophilus}
Probab=97.58 E-value=0.00012 Score=54.85 Aligned_cols=77 Identities=25% Similarity=0.337 Sum_probs=61.4
Q ss_pred CCcccccCCCCceEEEeecCcccccCCCChhHHHHHhhhhcCCCcCccccEEEeecCceeeEEeecCHHHHHHHHhhcCC
Q 011060 275 SSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 354 (494)
Q Consensus 275 ~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~i~~~~~~~gs~fdvp~~~a~~~~~~~~~ 354 (494)
.++||+++++||+|+.+.-. .++..-++.+|.+... +||+|..+.. |+++|++.+..+ .-
T Consensus 2 ~~~SLLTGEEGw~Tlkl~G~------rLS~~R~VAlLk~aG~----~iGkI~~~~~----gayaDlr~e~l~------~~ 61 (88)
T 3i31_A 2 AERSLLTGEEGWRTYKATGP------RLSLPRLVALLKGQGL----EVGKVAEAEG----GFYVDLRPEARP------EV 61 (88)
T ss_dssp CCBCTTTCCBSCEEEEEECT------TCCHHHHHHHHHHTTC----CEEEEEEETT----EEEEEECTTCCC------CC
T ss_pred CcccccccCcceEEEEEecc------cccHHHHHHHHHHccc----ccccEEeccc----eeEEecChHHcc------cc
Confidence 46899999999999999644 4888889999887654 8999998765 589999988766 33
Q ss_pred CCCceEeeccCCCCCCC
Q 011060 355 PGNTISKITKLPALQDD 371 (494)
Q Consensus 355 ~~~~i~~~~~lP~l~~~ 371 (494)
.++.++.++.+|.+.+.
T Consensus 62 ~~~~~e~A~~v~~~~E~ 78 (88)
T 3i31_A 62 AGLRLEPARRVEGLLEI 78 (88)
T ss_dssp TTCEEEECCSCCCCC--
T ss_pred ccceehhhhhccccccC
Confidence 67888888888888765
No 96
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=97.57 E-value=4.9e-05 Score=71.90 Aligned_cols=51 Identities=37% Similarity=0.690 Sum_probs=44.9
Q ss_pred CCcCCHHHHHHHHHHh--CCC--CCcEEEEeecCChHHHHHHHHHcCCCcEEEec
Q 011060 1 MLAVGFEEDVELILEN--LPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLV 51 (494)
Q Consensus 1 mL~~GF~~~l~~Il~~--~~~--~~q~il~SAT~~~~v~~~~~~~~~~~~~v~~~ 51 (494)
|++++|.+++..|+.. ++. +.|+++||||+|+++.++++.++.+|..|.+.
T Consensus 186 ~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 240 (253)
T 1wrb_A 186 MLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 240 (253)
T ss_dssp HHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC
T ss_pred HHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEEC
Confidence 4678999999999995 454 78999999999999999999999999888764
No 97
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=97.52 E-value=2.8e-05 Score=53.74 Aligned_cols=18 Identities=50% Similarity=1.145 Sum_probs=16.2
Q ss_pred CccccCCCCccccCCCCC
Q 011060 477 GACFNCGKSGHRASECPN 494 (494)
Q Consensus 477 ~~c~~c~~~gh~~~~cp~ 494 (494)
..||+||++||+|+|||+
T Consensus 7 ~~C~~Cg~~GH~a~~C~~ 24 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRA 24 (49)
T ss_dssp CBCTTTCCBTCCTTTCCC
T ss_pred CeeeecCCCCcChhhCcC
Confidence 359999999999999984
No 98
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.44 E-value=6.7e-05 Score=54.79 Aligned_cols=18 Identities=44% Similarity=1.027 Sum_probs=16.2
Q ss_pred CccccCCCCccccCCCCC
Q 011060 477 GACFNCGKSGHRASECPN 494 (494)
Q Consensus 477 ~~c~~c~~~gh~~~~cp~ 494 (494)
..||+|+++||+|+|||.
T Consensus 8 ~~C~~Cg~~GH~a~~C~~ 25 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKL 25 (63)
T ss_dssp CCCSSSCCSSSCTTTCCS
T ss_pred CcccccCCCCcChhhCCC
Confidence 459999999999999983
No 99
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.43 E-value=0.0013 Score=64.12 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=85.5
Q ss_pred CccHHHHHHHHHHHHc-cCCeEEEEeCChHHHHHHHHHHH-ccCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccccc
Q 011060 71 ATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 148 (494)
Q Consensus 71 ~~~k~~~l~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~ 148 (494)
...|+.+|..+|..+. .+.++|||++..+..+.+..++. +++....+.|.....++ +. .+....|.+.|....
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~-k~----~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAA-AA----NDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhh-hc----ccCCceEEEEECCCC
Confidence 4679999999998774 45699999999999999999988 57888889988554332 21 234556655566666
Q ss_pred ccCC-----CCCccEEEEeCCCCCHhH-HHHHhhccCcCC----CCceEEEecChhh
Q 011060 149 RGLD-----IPNVDLIIHYELPNDPET-FVHRSGRTGRAG----KEGTAILMFTSSQ 195 (494)
Q Consensus 149 ~Gid-----ip~v~~VI~~~~P~~~~~-y~qr~GR~gR~g----~~g~~i~l~~~~e 195 (494)
-|++ +...+.||.||.-|++.. .+|.+-|+.|.+ ++-.+|.|++...
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTS
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 6676 678899999999998887 488777877762 4556777777654
No 100
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=97.42 E-value=9.7e-05 Score=55.64 Aligned_cols=17 Identities=47% Similarity=1.085 Sum_probs=15.7
Q ss_pred ccccCCCCccccCCCCC
Q 011060 478 ACFNCGKSGHRASECPN 494 (494)
Q Consensus 478 ~c~~c~~~gh~~~~cp~ 494 (494)
.||+|+++||||+|||.
T Consensus 26 ~C~~Cg~~GH~a~~C~~ 42 (74)
T 2li8_A 26 RCYNCGGLDHHAKECKL 42 (74)
T ss_dssp CCTTTCCSSSCTTTCSS
T ss_pred cccccCCcCcCcccCCC
Confidence 49999999999999983
No 101
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=97.42 E-value=3.6e-05 Score=55.84 Aligned_cols=18 Identities=44% Similarity=1.376 Sum_probs=16.2
Q ss_pred CccccCCCCccccCCCCC
Q 011060 477 GACFNCGKSGHRASECPN 494 (494)
Q Consensus 477 ~~c~~c~~~gh~~~~cp~ 494 (494)
..||+|+++||||+|||+
T Consensus 5 ~~C~~Cg~~GH~a~~C~~ 22 (61)
T 2ihx_A 5 GLCYTCGSPGHYQAQCPK 22 (61)
T ss_dssp TBCSSSCCBTCCGGGCTT
T ss_pred CcccccCCCCeehhhCcC
Confidence 349999999999999985
No 102
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=97.31 E-value=6.2e-05 Score=53.42 Aligned_cols=18 Identities=56% Similarity=1.184 Sum_probs=16.2
Q ss_pred CccccCCCCccccCCCCC
Q 011060 477 GACFNCGKSGHRASECPN 494 (494)
Q Consensus 477 ~~c~~c~~~gh~~~~cp~ 494 (494)
..||+|++.||+|+|||+
T Consensus 13 ~~C~~Cg~~GH~a~~C~~ 30 (55)
T 1a1t_A 13 VKCFNCGKEGHIAKNCRA 30 (55)
T ss_dssp CBCTTTCCBSSCGGGCSS
T ss_pred cceeeeCCCCcChhhcCC
Confidence 359999999999999984
No 103
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.18 E-value=0.0037 Score=66.12 Aligned_cols=75 Identities=12% Similarity=0.139 Sum_probs=53.7
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHccCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEec--ccccccCCCC-----CccEE
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVAT--DVAARGLDIP-----NVDLI 159 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaT--d~~~~Gidip-----~v~~V 159 (494)
.++.+|||+++....+.+++.+ ...+..-.-+++. .++++.|+...-.||++| ..+.+|||+| .+..|
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~~~--~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~v 466 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMSRI--SLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDV 466 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHTTC--CSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEE
T ss_pred CCCCEEEEecCHHHHHHHHHhc--CCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEE
Confidence 4579999999999999988732 2333332334554 456777753334799998 6999999999 46789
Q ss_pred EEeCCCC
Q 011060 160 IHYELPN 166 (494)
Q Consensus 160 I~~~~P~ 166 (494)
|...+|.
T Consensus 467 iI~~lPf 473 (551)
T 3crv_A 467 VIVGIPY 473 (551)
T ss_dssp EEESCCC
T ss_pred EEEcCCC
Confidence 9888775
No 104
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=96.84 E-value=0.00037 Score=60.15 Aligned_cols=18 Identities=44% Similarity=1.027 Sum_probs=16.2
Q ss_pred CccccCCCCccccCCCCC
Q 011060 477 GACFNCGKSGHRASECPN 494 (494)
Q Consensus 477 ~~c~~c~~~gh~~~~cp~ 494 (494)
..|||||+.||+|++||+
T Consensus 98 ~~C~~Cg~~GH~a~~C~~ 115 (148)
T 3ts2_A 98 DRCYNCGGLDHHAKECKL 115 (148)
T ss_dssp CCCTTTCCSSCCGGGCCS
T ss_pred CcccEeCCccchhhhCCC
Confidence 349999999999999984
No 105
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.75 E-value=0.026 Score=61.92 Aligned_cols=89 Identities=20% Similarity=0.269 Sum_probs=71.0
Q ss_pred cHHH-HHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc
Q 011060 73 SKRT-ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 73 ~k~~-~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~ 146 (494)
-|.. .+..++..+..+.++||.+||+..+.++++.+.+ .+.+..+||+++..+|..+++.+.+|..+|+|+|..
T Consensus 401 GKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ 480 (780)
T 1gm5_A 401 GKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHA 480 (780)
T ss_dssp SHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTT
T ss_pred CHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 4433 3333444445678999999999999998888764 478999999999999999999999999999999974
Q ss_pred -ccccCCCCCccEEEE
Q 011060 147 -AARGLDIPNVDLIIH 161 (494)
Q Consensus 147 -~~~Gidip~v~~VI~ 161 (494)
+...+++.++.+||.
T Consensus 481 ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 481 LIQEDVHFKNLGLVII 496 (780)
T ss_dssp HHHHCCCCSCCCEEEE
T ss_pred HHhhhhhccCCceEEe
Confidence 344578888998885
No 106
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=95.42 E-value=0.03 Score=56.53 Aligned_cols=80 Identities=14% Similarity=0.195 Sum_probs=64.8
Q ss_pred HHHHccCCeEEEEeCChHHHHHHHHHHHc----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccccc----ccCCC
Q 011060 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA----RGLDI 153 (494)
Q Consensus 82 l~~~~~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~----~Gidi 153 (494)
+.....+.++||.+||+..+.++++.+.. .+.+..+||+.+..++...++.+..+..+|+|+|+-.- .-++.
T Consensus 58 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~ 137 (414)
T 3oiy_A 58 LWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQ 137 (414)
T ss_dssp HHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTT
T ss_pred HHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcc
Confidence 33345678999999999999999999886 56899999999999998888999888899999997322 12556
Q ss_pred CCccEEEE
Q 011060 154 PNVDLIIH 161 (494)
Q Consensus 154 p~v~~VI~ 161 (494)
..+++||.
T Consensus 138 ~~~~~iVi 145 (414)
T 3oiy_A 138 KRFDFVFV 145 (414)
T ss_dssp CCCSEEEE
T ss_pred ccccEEEE
Confidence 67888774
No 107
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=94.09 E-value=0.074 Score=60.72 Aligned_cols=88 Identities=15% Similarity=0.196 Sum_probs=68.6
Q ss_pred cHHHHH-HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc-
Q 011060 73 SKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV- 146 (494)
Q Consensus 73 ~k~~~l-~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~- 146 (494)
-|.... ..++.....+.++||.+||+..+.++++.+.+ .+.+..+||+++..+|...++.++++..+|||+|+-
T Consensus 105 GKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~r 184 (1104)
T 4ddu_A 105 GKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQF 184 (1104)
T ss_dssp CHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHH
T ss_pred cHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHH
Confidence 454432 33344445678999999999999999999986 358999999999988888999999998999999973
Q ss_pred ----ccccCCCCCccEEEE
Q 011060 147 ----AARGLDIPNVDLIIH 161 (494)
Q Consensus 147 ----~~~Gidip~v~~VI~ 161 (494)
+.. +++.++.+||.
T Consensus 185 L~~~l~~-l~~~~l~~lVi 202 (1104)
T 4ddu_A 185 VSKNREK-LSQKRFDFVFV 202 (1104)
T ss_dssp HHHSHHH-HHTSCCSEEEE
T ss_pred HHHHHHh-hcccCcCEEEE
Confidence 222 55678888875
No 108
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=93.48 E-value=0.2 Score=57.41 Aligned_cols=89 Identities=15% Similarity=0.198 Sum_probs=70.1
Q ss_pred cHHHH-HHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc-
Q 011060 73 SKRTI-LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD- 145 (494)
Q Consensus 73 ~k~~~-l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd- 145 (494)
-|..+ +..++.....+.++||.+||+..+++.++.+.+ .+.+..+++..+..++..+++.+.+|..+|+|+|.
T Consensus 636 GKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ 715 (1151)
T 2eyq_A 636 GKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHK 715 (1151)
T ss_dssp TTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTH
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 45433 223333445667999999999999999988874 25688999999999999999999999999999995
Q ss_pred cccccCCCCCccEEEE
Q 011060 146 VAARGLDIPNVDLIIH 161 (494)
Q Consensus 146 ~~~~Gidip~v~~VI~ 161 (494)
.+...+.+.++.+||.
T Consensus 716 ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 716 LLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp HHHSCCCCSSEEEEEE
T ss_pred HHhCCccccccceEEE
Confidence 4555688888888774
No 109
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=92.06 E-value=0.72 Score=42.45 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=52.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc-----ccc-ccCCCCCc
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAA-RGLDIPNV 156 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd-----~~~-~Gidip~v 156 (494)
..++||.++|++.++++++.+.+ .+.+..++|+.+...+...+.. ..+|+|+|+ .+. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 45799999999999999887764 4788999999988877666554 467999996 222 23566777
Q ss_pred cEEEE
Q 011060 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
.+||.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 77664
No 110
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=91.47 E-value=0.11 Score=30.21 Aligned_cols=19 Identities=11% Similarity=-0.074 Sum_probs=16.8
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 011060 416 RSSRSWGSDDEDGFSSSRG 434 (494)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~ 434 (494)
..|++||..||++++|+..
T Consensus 3 ~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC
T ss_pred CeeEeCCCCCcccccCCCc
Confidence 4699999999999999865
No 111
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=91.38 E-value=1.2 Score=41.04 Aligned_cols=69 Identities=17% Similarity=0.175 Sum_probs=50.2
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc-----c-cccCCCCCcc
Q 011060 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----A-ARGLDIPNVD 157 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~-----~-~~Gidip~v~ 157 (494)
.++||.++|++.+.++++.+.+ .+.+..++|+.+..++...+. ...+|+|+|+- + ...+++..++
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQ----MGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHS----SCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhC----CCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 5899999999999999888764 366788899887665544432 25689999972 1 2235677888
Q ss_pred EEEE
Q 011060 158 LIIH 161 (494)
Q Consensus 158 ~VI~ 161 (494)
+||.
T Consensus 177 ~lVi 180 (253)
T 1wrb_A 177 YIVL 180 (253)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7774
No 112
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=90.75 E-value=0.74 Score=41.80 Aligned_cols=71 Identities=14% Similarity=0.222 Sum_probs=46.7
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc------ccccCCCCCc
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPNV 156 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~------~~~Gidip~v 156 (494)
...++||.++|++.++++++.+.+ .+.+..++++.+...+...+.. ..+|+|+|+- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISK----GVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHS----CCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCcCcccc
Confidence 456899999999999999988875 4678889998776654444332 4689999962 2234566677
Q ss_pred cEEEE
Q 011060 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 76664
No 113
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=90.71 E-value=1.2 Score=40.12 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=51.0
Q ss_pred CeEEEEeCChHHHHHHHHHHHc------cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccc------cccCCCCCc
Q 011060 89 GKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPNV 156 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~------~~Gidip~v 156 (494)
.++||.++|+..++++++.+.+ .+.+..++|+.+..++...+. ++..+|+|+|.-. ...+++..+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK---KNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHH---HSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHh---cCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 4899999999999998887764 467889999998776655443 3456899999621 223566677
Q ss_pred cEEEE
Q 011060 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
++||.
T Consensus 160 ~~lVi 164 (220)
T 1t6n_A 160 KHFIL 164 (220)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 76664
No 114
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=90.38 E-value=0.61 Score=49.45 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=53.0
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhc--cCCcEEEEEecc
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGF--RQGKFTVLVATD 145 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F--~~g~~~iLVaTd 145 (494)
..+.+||.+|++..+++.++.|.. ++.+..++++++..++..++..+ ..+..+|||+|+
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 467999999999999999988885 78999999999999999988888 567899999998
No 115
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=89.83 E-value=0.65 Score=48.42 Aligned_cols=74 Identities=19% Similarity=0.188 Sum_probs=60.2
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccccc------ccCCCCCccEE
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA------RGLDIPNVDLI 159 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~------~Gidip~v~~V 159 (494)
..+.+||.+|++..+++..+.|.. ++.+..+|+..+..++..++..+..+..+||++|+--- .-++..++.+|
T Consensus 64 ~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~v 143 (523)
T 1oyw_A 64 LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLL 143 (523)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEE
T ss_pred hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEE
Confidence 458899999999999999988885 78899999999999999999999999999999996321 22333566666
Q ss_pred E
Q 011060 160 I 160 (494)
Q Consensus 160 I 160 (494)
|
T Consensus 144 V 144 (523)
T 1oyw_A 144 A 144 (523)
T ss_dssp E
T ss_pred E
Confidence 6
No 116
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=89.45 E-value=1.5 Score=40.59 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=51.2
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc-----cc--ccCCCCC
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AA--RGLDIPN 155 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~-----~~--~Gidip~ 155 (494)
..++||.++|+..+.++++.+.+ .+.+..++|+.+...+...+. ...+|+|+|+- +. ..+++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA----KKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH----TCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 35799999999999998887763 467889999988766554443 25789999962 21 3466777
Q ss_pred ccEEEE
Q 011060 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+++||.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 777664
No 117
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=89.22 E-value=0.91 Score=40.32 Aligned_cols=70 Identities=23% Similarity=0.232 Sum_probs=50.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc---cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc-----c-cccCCCCCccE
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----A-ARGLDIPNVDL 158 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~-----~-~~Gidip~v~~ 158 (494)
..++||.++|+..+.++++.+.+ .+.+..++++.+...+...+.. ..+|+|+|+- + ...+++..+++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLR----GADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHH----CCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhC----CCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 46899999999999999998875 3678889998876555444432 4679999962 1 22456667777
Q ss_pred EEE
Q 011060 159 IIH 161 (494)
Q Consensus 159 VI~ 161 (494)
||.
T Consensus 148 iVi 150 (207)
T 2gxq_A 148 AVL 150 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 118
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=88.89 E-value=0.83 Score=41.65 Aligned_cols=85 Identities=15% Similarity=0.177 Sum_probs=56.4
Q ss_pred ccHHHH-HHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHc------cCcEEEEeCCCCHHHHHHHHhhccCCcEEEE
Q 011060 72 TSKRTI-LSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVL 141 (494)
Q Consensus 72 ~~k~~~-l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iL 141 (494)
.-|..+ +..++..+ ....++||.++|++.++++++.+.+ .+.+..++|+.+..++...++ ..+|+
T Consensus 72 sGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~Ii 146 (230)
T 2oxc_A 72 TGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-----KCHIA 146 (230)
T ss_dssp SSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-----SCSEE
T ss_pred CcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-----CCCEE
Confidence 455543 33344433 2346899999999999999888874 367889999998877655442 46799
Q ss_pred Eecccc------cccCCCCCccEEEE
Q 011060 142 VATDVA------ARGLDIPNVDLIIH 161 (494)
Q Consensus 142 VaTd~~------~~Gidip~v~~VI~ 161 (494)
|+|+-. ...+++..+++||.
T Consensus 147 v~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 147 VGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp EECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred EECHHHHHHHHhcCCcccccCCEEEe
Confidence 999731 12345556666553
No 119
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=88.06 E-value=0.13 Score=29.40 Aligned_cols=16 Identities=38% Similarity=0.831 Sum_probs=14.9
Q ss_pred cccCCCCccccCCCCC
Q 011060 479 CFNCGKSGHRASECPN 494 (494)
Q Consensus 479 c~~c~~~gh~~~~cp~ 494 (494)
|-.|..-|||+.||+.
T Consensus 6 Ce~CE~FGH~t~~C~d 21 (26)
T 2hqh_E 6 CEICEMFGHWATNCND 21 (26)
T ss_dssp ETTTTEESSCGGGCCT
T ss_pred chHHHHhCcccccCCc
Confidence 9999999999999974
No 120
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=87.68 E-value=2.4 Score=39.45 Aligned_cols=71 Identities=15% Similarity=0.237 Sum_probs=51.6
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc-----ccc--ccCCCC
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAA--RGLDIP 154 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd-----~~~--~Gidip 154 (494)
...++||.+||+..++++++.+.+ .+.+..++|+.....+...+.. ..+|+|+|+ .+. ..+++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGN----GINIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcC----CCCEEEEcHHHHHHHHHccCCcccc
Confidence 356899999999999999988875 3567788998877665544432 378999995 222 246777
Q ss_pred CccEEEE
Q 011060 155 NVDLIIH 161 (494)
Q Consensus 155 ~v~~VI~ 161 (494)
++.+||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7887764
No 121
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=87.46 E-value=1.5 Score=38.94 Aligned_cols=70 Identities=19% Similarity=0.118 Sum_probs=49.1
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc------cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc-----cc-ccCCCCC
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AA-RGLDIPN 155 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~-----~~-~Gidip~ 155 (494)
..++||.++|+..++++++.+.+ .+.+..++|+.+..+....+ . ...+|+|+|+- +. .-+++..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~-~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL---D-DTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT---T-SCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhc---C-CCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 35799999999999999888763 35788899998776554333 2 35689999972 22 2345566
Q ss_pred ccEEEE
Q 011060 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+++||.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 776663
No 122
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=86.36 E-value=1.6 Score=44.05 Aligned_cols=70 Identities=11% Similarity=0.171 Sum_probs=52.9
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc-----cccc-cCCCCCc
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPNV 156 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd-----~~~~-Gidip~v 156 (494)
..++||.++|++.+.++++.+.+ .+.+..++|+.+..++...+.. ..+|+|+|+ .+.+ -+++..+
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~----~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITR----GCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTT----CCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhc----CCCEEEEChHHHHHHHHhCCcccccC
Confidence 35899999999999999888774 3678889999988776555432 578999996 2223 3567788
Q ss_pred cEEEE
Q 011060 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
++||.
T Consensus 205 ~~lVl 209 (434)
T 2db3_A 205 RFVVL 209 (434)
T ss_dssp CEEEE
T ss_pred CeEEE
Confidence 88774
No 123
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=86.34 E-value=0.39 Score=31.08 Aligned_cols=20 Identities=0% Similarity=-0.170 Sum_probs=17.6
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 011060 416 RSSRSWGSDDEDGFSSSRGG 435 (494)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~ 435 (494)
..|++||..||++++|+...
T Consensus 11 ~~C~~Cgk~GH~ardCP~~~ 30 (40)
T 1a6b_B 11 DQCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp SSCSSSCCTTCCTTSCSSSC
T ss_pred CeeeECCCCCcchhhCcCCc
Confidence 57999999999999998753
No 124
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=86.30 E-value=2.8 Score=41.04 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=53.3
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc------cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccc------cccCCCCC
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPN 155 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~------~~Gidip~ 155 (494)
..++||.|||+..++++++.+.+ .+.+..++|+.+..++...+. .+..+|+|+|.-. ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK---KNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHH---HSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHh---cCCCCEEEECHHHHHHHHHcCCccccc
Confidence 45899999999999998887764 467899999998776655543 3556899999632 23456778
Q ss_pred ccEEEE
Q 011060 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+++||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 888774
No 125
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=86.23 E-value=2.6 Score=38.25 Aligned_cols=70 Identities=11% Similarity=0.208 Sum_probs=47.3
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc-----ccc--cCCCC
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AAR--GLDIP 154 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~-----~~~--Gidip 154 (494)
...++||.++|+..+.++++.+.+ .+.+..+||+.+.......+ ...+|+|+|.- +.+ .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 356899999999999999988874 26788899987765544443 25689999962 111 24555
Q ss_pred CccEEEE
Q 011060 155 NVDLIIH 161 (494)
Q Consensus 155 ~v~~VI~ 161 (494)
++++||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 6665553
No 126
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=86.01 E-value=2.5 Score=37.97 Aligned_cols=85 Identities=18% Similarity=0.178 Sum_probs=49.4
Q ss_pred ccHHHH-HHHHHHHH---ccCCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEE
Q 011060 72 TSKRTI-LSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLV 142 (494)
Q Consensus 72 ~~k~~~-l~~ll~~~---~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLV 142 (494)
.-|..+ +..++..+ ....++||.++|+..++++++.+.. .+.+..++|+.+..++...+ . ..+|+|
T Consensus 62 sGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~--~~~iiv 136 (224)
T 1qde_A 62 TGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL---R--DAQIVV 136 (224)
T ss_dssp SSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C---T--TCSEEE
T ss_pred CcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC---C--CCCEEE
Confidence 455544 33444433 2345899999999999999888764 46788899987665544332 2 267999
Q ss_pred ecccc------cccCCCCCccEEEE
Q 011060 143 ATDVA------ARGLDIPNVDLIIH 161 (494)
Q Consensus 143 aTd~~------~~Gidip~v~~VI~ 161 (494)
+|+-. ...+++..+++||.
T Consensus 137 ~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 137 GTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp ECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred ECHHHHHHHHHhCCcchhhCcEEEE
Confidence 99632 23455666666663
No 127
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=85.52 E-value=0.94 Score=51.48 Aligned_cols=75 Identities=17% Similarity=0.284 Sum_probs=57.9
Q ss_pred HccCCeEEEEeCChHHHHHHHHHHHc-----cC----cEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc-ccccCC-C
Q 011060 85 YAKGGKTIVFTQTKRDADEVSLALTS-----II----ASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARGLD-I 153 (494)
Q Consensus 85 ~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~----~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~-~~~Gid-i 153 (494)
...+.++||.+||+..+.++++.+.. .+ .+..+||+++..++.+.++.+++ .+|+|+|+- +..-+. +
T Consensus 96 ~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L 173 (1054)
T 1gku_B 96 ALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYREL 173 (1054)
T ss_dssp HTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTS
T ss_pred hhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHh
Confidence 34567999999999999999988874 24 78899999999998888888887 889999972 111111 5
Q ss_pred CCccEEEE
Q 011060 154 PNVDLIIH 161 (494)
Q Consensus 154 p~v~~VI~ 161 (494)
..+++||.
T Consensus 174 ~~l~~lVi 181 (1054)
T 1gku_B 174 GHFDFIFV 181 (1054)
T ss_dssp CCCSEEEE
T ss_pred ccCCEEEE
Confidence 57777774
No 128
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=84.94 E-value=1.4 Score=40.42 Aligned_cols=72 Identities=14% Similarity=0.195 Sum_probs=43.8
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc-----cccc-cCCCCC
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPN 155 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd-----~~~~-Gidip~ 155 (494)
...++||.++|++.+.++++.+.+ .+.+..++++.+... ..+.+..+..+|+|+|+ .+.+ .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 346899999999999999988874 356777888765433 23445556678999994 2333 356667
Q ss_pred ccEEEE
Q 011060 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777664
No 129
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=84.85 E-value=1.8 Score=44.84 Aligned_cols=70 Identities=11% Similarity=0.150 Sum_probs=47.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccc-----ccc-C-CCCC
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-----ARG-L-DIPN 155 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~-----~~G-i-dip~ 155 (494)
..++||.+||+..+.++++.+.+ .+.+..+||+.+...+...+.. ..+|+|+|+-. ..+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHH----HCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhC----CCCEEEECHHHHHHHHHhCccccccc
Confidence 57899999999999988888764 5789999999876654333322 46799999632 222 4 6778
Q ss_pred ccEEEE
Q 011060 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888774
No 130
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=84.59 E-value=0.22 Score=38.00 Aligned_cols=15 Identities=7% Similarity=0.000 Sum_probs=4.7
Q ss_pred cccCCCCccccCCCC
Q 011060 479 CFNCGKSGHRASECP 493 (494)
Q Consensus 479 c~~c~~~gh~~~~cp 493 (494)
||+|+++||+++||+
T Consensus 27 cY~c~~~gh~~~~c~ 41 (83)
T 3nyb_B 27 AYILVDDNEKAKPKV 41 (83)
T ss_dssp CCCBC----------
T ss_pred ccccccCCccccccc
Confidence 999999999999985
No 131
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=83.69 E-value=2.6 Score=41.78 Aligned_cols=69 Identities=16% Similarity=0.138 Sum_probs=51.3
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc-----cc-ccCCCCCcc
Q 011060 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AA-RGLDIPNVD 157 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~-----~~-~Gidip~v~ 157 (494)
.++||.+||+..+.++++.+.+ .+.+..+||+.+..++...+. ...+|+|+|+- +. ..+++..++
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 177 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLE----RGCHLLVATPGRLVDMMERGKIGLDFCK 177 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHT----TCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhh----CCCCEEEEChHHHHHHHHcCCcChhhCc
Confidence 4699999999999999888764 467889999988776654443 24689999972 22 235677788
Q ss_pred EEEE
Q 011060 158 LIIH 161 (494)
Q Consensus 158 ~VI~ 161 (494)
+||.
T Consensus 178 ~iVi 181 (417)
T 2i4i_A 178 YLVL 181 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8774
No 132
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=83.19 E-value=3.5 Score=41.26 Aligned_cols=70 Identities=26% Similarity=0.388 Sum_probs=53.6
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHcc--C---cEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccc------cccCCCCC
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTSI--I---ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPN 155 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~~--~---~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~------~~Gidip~ 155 (494)
...++||.||++..+++.++.+.+. + .+..+||+....++..... ..+|+|+|.-. ..-+....
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 5689999999999999999988863 3 7899999999887766554 35799999622 12456777
Q ss_pred ccEEEE
Q 011060 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+++||.
T Consensus 126 ~~~vIi 131 (494)
T 1wp9_A 126 VSLIVF 131 (494)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 888774
No 133
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=82.31 E-value=1.8 Score=44.64 Aligned_cols=70 Identities=13% Similarity=0.219 Sum_probs=50.1
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc-----cccc-C-CCCC
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG-L-DIPN 155 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~-----~~~G-i-dip~ 155 (494)
..++||.+||+..+.+++..+.+ .+.+..+||+.+...+...+.. ..+|+|+|+- +..+ + ++..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIE----DNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHH----HCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhc----CCCEEEECHHHHHHHHhcCccccccc
Confidence 67899999999999988887764 5789999999866554333322 4679999963 2222 3 5667
Q ss_pred ccEEEE
Q 011060 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788774
No 134
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=81.71 E-value=4.7 Score=38.32 Aligned_cols=70 Identities=17% Similarity=0.241 Sum_probs=51.5
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccc------cccCCCCC
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPN 155 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~------~~Gidip~ 155 (494)
...++||.+|++..++++++.+.+ .+.+..+|++.+..++...+. ..+|+|+|.-. ..-+++..
T Consensus 55 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 129 (337)
T 2z0m_A 55 LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-----NADIVVATPGRLLDLWSKGVIDLSS 129 (337)
T ss_dssp HTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-----TCSEEEECHHHHHHHHHTTSCCGGG
T ss_pred hcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-----CCCEEEECHHHHHHHHHcCCcchhh
Confidence 468999999999999999988874 367888999988776554443 26799999621 22345667
Q ss_pred ccEEEE
Q 011060 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+++||.
T Consensus 130 ~~~iVi 135 (337)
T 2z0m_A 130 FEIVII 135 (337)
T ss_dssp CSEEEE
T ss_pred CcEEEE
Confidence 777764
No 135
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=81.60 E-value=2.8 Score=45.96 Aligned_cols=70 Identities=11% Similarity=0.143 Sum_probs=47.3
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc-----cccc-C-CCCC
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG-L-DIPN 155 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~-----~~~G-i-dip~ 155 (494)
..++||.|||+..+.+++..+.+ .+.+..+||+.+...+...+.. ..+|+|+|+- +..+ + ++.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHH----TCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhC----CCCEEEEchHHHHHHHHhcccccccc
Confidence 67999999999999998877764 5789999999876654433322 4679999962 2222 3 5667
Q ss_pred ccEEEE
Q 011060 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788774
No 136
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=80.23 E-value=1.7 Score=39.10 Aligned_cols=70 Identities=13% Similarity=0.243 Sum_probs=45.9
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc---------cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc-----ccc-cCC
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS---------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AAR-GLD 152 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~---------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~-----~~~-Gid 152 (494)
..++||.++|+..++++++.+.+ .+.+..++|+.+..+. .+.++ ...+|+|+|+- +.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKA---LEKLN-VQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHT---TCCCS-SCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHH---HHHcC-CCCCEEEeCHHHHHHHHHcCCCC
Confidence 46899999999999998887763 3567788888754432 22232 35679999952 222 345
Q ss_pred CCCccEEEE
Q 011060 153 IPNVDLIIH 161 (494)
Q Consensus 153 ip~v~~VI~ 161 (494)
+..+++||.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 556666553
No 137
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=79.76 E-value=0.81 Score=31.96 Aligned_cols=20 Identities=0% Similarity=-0.170 Sum_probs=17.7
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 011060 416 RSSRSWGSDDEDGFSSSRGG 435 (494)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~ 435 (494)
..|+.||..||++++|+...
T Consensus 24 ~~C~~Cge~GH~ardCp~~~ 43 (56)
T 1u6p_A 24 DQCAYCKEKGHWAKDCPKKP 43 (56)
T ss_dssp TBCSSSCCBSSCGGGCTTCC
T ss_pred CcceeCCCCCcccccCcCCc
Confidence 56999999999999998754
No 138
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=79.51 E-value=3.7 Score=40.12 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=51.8
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccc------cccCCCCC
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPN 155 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~------~~Gidip~ 155 (494)
...++||.+||+..++++++.+.+ .+.+..++|+.+..++...+. ..+|+|+|.-. ...+++..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 346999999999999999888764 367889999998877665554 35799999521 22355667
Q ss_pred ccEEEE
Q 011060 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+++||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777774
No 139
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=79.33 E-value=7.7 Score=37.24 Aligned_cols=69 Identities=22% Similarity=0.249 Sum_probs=50.8
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccc------cccCCCCCc
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPNV 156 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~------~~Gidip~v 156 (494)
..++||.+|++..++++++.+.+ .+.+..++++.........+. ..+|+|+|.-. ...+++..+
T Consensus 74 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~~l~~~~~~~~~~~~~~ 148 (367)
T 1hv8_A 74 GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTLNLKNV 148 (367)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTTCSCTTSC
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEEecHHHHHHHHHcCCcccccC
Confidence 56899999999999999988874 367888899887766554443 46799999631 123566777
Q ss_pred cEEEE
Q 011060 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
++||.
T Consensus 149 ~~iIi 153 (367)
T 1hv8_A 149 KYFIL 153 (367)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 87774
No 140
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=78.21 E-value=7 Score=38.49 Aligned_cols=71 Identities=15% Similarity=0.236 Sum_probs=52.3
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc-----cccc-cCCCCC
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPN 155 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd-----~~~~-Gidip~ 155 (494)
...++||.+||+..+.++++.+.+ .+.+..++++....++...+.. ..+|+|+|+ .+.+ .++...
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~ivv~Tp~~l~~~l~~~~~~~~~ 179 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY----GQHVVAGTPGRVFDMIRRRSLRTRA 179 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhc----CCCEEEcCHHHHHHHHHhCCccHhh
Confidence 457999999999999999988764 3568888999887766555442 457999995 2333 466677
Q ss_pred ccEEEE
Q 011060 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+++||.
T Consensus 180 ~~~vVi 185 (410)
T 2j0s_A 180 IKMLVL 185 (410)
T ss_dssp CCEEEE
T ss_pred eeEEEE
Confidence 887774
No 141
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=76.30 E-value=8.6 Score=37.67 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=50.7
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc-----cc-ccCCCCCc
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AA-RGLDIPNV 156 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~-----~~-~Gidip~v 156 (494)
..++||.++|+..++++++.+.+ .+.+..++++.........+ ....+|+|+|.- +. ...++.++
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~~~~~~~~~~ 164 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRL----NETVHILVGTPGRVLDLASRKVADLSDC 164 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHT----TSCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHh----cCCCCEEEEchHHHHHHHHhCCcccccC
Confidence 45899999999999999888774 46788899988765543322 246789999952 22 33667788
Q ss_pred cEEEE
Q 011060 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
++||.
T Consensus 165 ~~vIi 169 (400)
T 1s2m_A 165 SLFIM 169 (400)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88774
No 142
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=75.60 E-value=6 Score=36.02 Aligned_cols=87 Identities=17% Similarity=0.284 Sum_probs=52.8
Q ss_pred ccHHHH-HHHHHHHHc----cCCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEE
Q 011060 72 TSKRTI-LSDLITVYA----KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVL 141 (494)
Q Consensus 72 ~~k~~~-l~~ll~~~~----~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iL 141 (494)
.-|..+ +..++..+. ...++||.++|++.+.++++.+.+ .+.+..++++.... ...........+|+
T Consensus 77 sGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~I~ 153 (245)
T 3dkp_A 77 SGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAA---KKFGPKSSKKFDIL 153 (245)
T ss_dssp SCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHH---TTTSTTSCCCCCEE
T ss_pred CcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHH---HHhhhhhcCCCCEE
Confidence 345443 333444442 345799999999999999988875 35566666653221 11223334567899
Q ss_pred Eeccc-----ccc---cCCCCCccEEEE
Q 011060 142 VATDV-----AAR---GLDIPNVDLIIH 161 (494)
Q Consensus 142 VaTd~-----~~~---Gidip~v~~VI~ 161 (494)
|+|+- +.. .+++.++.+||.
T Consensus 154 v~Tp~~l~~~l~~~~~~~~~~~~~~lVi 181 (245)
T 3dkp_A 154 VTTPNRLIYLLKQDPPGIDLASVEWLVV 181 (245)
T ss_dssp EECHHHHHHHHHSSSCSCCCTTCCEEEE
T ss_pred EECHHHHHHHHHhCCCCcccccCcEEEE
Confidence 99952 212 366777777664
No 143
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=73.83 E-value=4.7 Score=39.74 Aligned_cols=86 Identities=13% Similarity=0.190 Sum_probs=56.2
Q ss_pred cHHHH-HHHHHHHHc---cCCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEe
Q 011060 73 SKRTI-LSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVA 143 (494)
Q Consensus 73 ~k~~~-l~~ll~~~~---~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVa 143 (494)
-|..+ +..++..+. ...++||.++|+..+.++++.+.. .+.+..++++.....+ ++.+..+..+|+|+
T Consensus 89 GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~ 165 (414)
T 3eiq_A 89 GKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVG 165 (414)
T ss_dssp SSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEE
T ss_pred cccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEE
Confidence 44433 444444432 456899999999999999888874 3456677777665444 34445567889999
Q ss_pred cc-----ccc-ccCCCCCccEEEE
Q 011060 144 TD-----VAA-RGLDIPNVDLIIH 161 (494)
Q Consensus 144 Td-----~~~-~Gidip~v~~VI~ 161 (494)
|+ .+. ..+++..+++||.
T Consensus 166 T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 166 TPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp CHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred CHHHHHHHHHcCCcccccCcEEEE
Confidence 95 222 2356667787764
No 144
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=71.41 E-value=4 Score=45.70 Aligned_cols=70 Identities=11% Similarity=0.143 Sum_probs=46.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc-----cccc-C-CCCC
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG-L-DIPN 155 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~-----~~~G-i-dip~ 155 (494)
..++||.+||+..+.+++..+.+ .+.+..+||+.+...+...+.. ..+|+|+|+- +.++ + .+..
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~----~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHH----HCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhcc----CCCEEEecHHHHHHHHHcCccccccC
Confidence 57899999999999998887764 5789999999876654333322 4679999962 2222 3 5667
Q ss_pred ccEEEE
Q 011060 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+++||.
T Consensus 372 ~~liVi 377 (936)
T 4a2w_A 372 FTLMIF 377 (936)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 787774
No 145
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=70.83 E-value=0.86 Score=45.00 Aligned_cols=10 Identities=10% Similarity=0.032 Sum_probs=5.4
Q ss_pred CHHHHHHHHH
Q 011060 256 GTDALAAALA 265 (494)
Q Consensus 256 ~~~~l~~al~ 265 (494)
.|..||+|.+
T Consensus 192 ~Ps~IAaAAI 201 (358)
T 2pk2_A 192 TPPVVACVCI 201 (358)
T ss_dssp CHHHHTTTTT
T ss_pred CHHHHHHHHH
Confidence 4566665443
No 146
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=70.76 E-value=4.3 Score=41.29 Aligned_cols=65 Identities=6% Similarity=-0.002 Sum_probs=43.2
Q ss_pred eEEEEeCChHHHHHHHHHHHc------cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccccc-------ccCCCCCc
Q 011060 90 KTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA-------RGLDIPNV 156 (494)
Q Consensus 90 ~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~-------~Gidip~v 156 (494)
++||.+||+..+.++++.+.+ .+.+....++.... .......+|+|+|+-.- ..+++.++
T Consensus 164 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 236 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE-------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKI 236 (479)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCC-------TTCCCCCSEEEECHHHHHHHHTTSCCCCGGGC
T ss_pred cEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccc-------ccccCCCCEEEECchHHHHHHHhcCCcCcccC
Confidence 899999999999998777653 24555555543221 11123457999997432 35777888
Q ss_pred cEEEE
Q 011060 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
.+||.
T Consensus 237 ~~iVi 241 (479)
T 3fmp_B 237 KVFVL 241 (479)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88874
No 147
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.70 E-value=2.4 Score=29.38 Aligned_cols=18 Identities=6% Similarity=-0.136 Sum_probs=16.2
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 011060 416 RSSRSWGSDDEDGFSSSR 433 (494)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~ 433 (494)
..|++||..||+.++|+.
T Consensus 8 ~~C~kCGk~GH~~k~Cp~ 25 (55)
T 2ysa_A 8 YTCFRCGKPGHYIKNCPT 25 (55)
T ss_dssp CCCTTTCCTTSCGGGCSG
T ss_pred CccccCCCcCcccccCCC
Confidence 569999999999999973
No 148
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=69.50 E-value=20 Score=29.94 Aligned_cols=60 Identities=13% Similarity=0.029 Sum_probs=34.0
Q ss_pred CceEEEeecCcccccCCCChhHHHHHhhhhcCCCcCccccEEEeecC----ceeeEEeec-CHHHHHHHHhhcC
Q 011060 285 GWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADD----RVQGAVFDL-PEEIAKELLNKQI 353 (494)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~i~~~~----~~~gs~fdv-p~~~a~~~~~~~~ 353 (494)
...+|+|..- ...++..+|..++..... |-.|.|..+. ....+||+. ..+.|+++++.+.
T Consensus 38 ~~~~l~V~nl----p~~~t~~~l~~~F~~~G~-----i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 102 (156)
T 1h2v_Z 38 KSCTLYVGNL----SFYTTEEQIYELFSKSGD-----IKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYIN 102 (156)
T ss_dssp TCCEEEEESC----CTTCCHHHHHHHHGGGSC-----EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCEEEEeCC----CCCCCHHHHHHHHHhcCC-----eEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 3467777532 235788999999887654 4456665431 112355555 3445555665433
No 149
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=69.41 E-value=4 Score=36.09 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=34.5
Q ss_pred CCeEEEEeCChHHHHH-HHHHHHc----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc
Q 011060 88 GGKTIVFTQTKRDADE-VSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~-l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd 145 (494)
..++||+|+++..+++ +.+.+.. .+.+..++|+.....+...+.. ..+|+|+|.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVK----SCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHHH----HCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhcc----CCCEEEECH
Confidence 5799999999999887 5555543 4678888887644332212111 467899986
No 150
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=69.16 E-value=5.1 Score=38.14 Aligned_cols=66 Identities=6% Similarity=0.022 Sum_probs=45.0
Q ss_pred CeEEEEeCChHHHHHHHHHHHc------cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccc------c-ccCCCCC
Q 011060 89 GKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------A-RGLDIPN 155 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~------~-~Gidip~ 155 (494)
.++||.+||++.+.+++..+.. .+.+..++++.....+. ....+|||+|+-. . ..+++..
T Consensus 163 ~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~l~~ 235 (300)
T 3fmo_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (300)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCCGGG
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCChhh
Confidence 3799999999999998877763 25567777765432211 2355799999732 1 3567778
Q ss_pred ccEEEE
Q 011060 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+.+||.
T Consensus 236 l~~lVl 241 (300)
T 3fmo_B 236 IKVFVL 241 (300)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 887774
No 151
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=69.11 E-value=6.1 Score=42.24 Aligned_cols=69 Identities=12% Similarity=0.227 Sum_probs=48.9
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc-----cccc-C-CCCCc
Q 011060 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG-L-DIPNV 156 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~-----~~~G-i-dip~v 156 (494)
.++||.+||+..+.+.++.+.+ .+.+..+||+.+...+...+.. ..+|+|+|+- +..+ + ++.++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVE----NNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHH----TCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhcc----CCCEEEECHHHHHHHHhcCcccccccc
Confidence 7899999999999988888764 4788999999865433322221 4689999972 2222 3 56778
Q ss_pred cEEEE
Q 011060 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
++||.
T Consensus 138 ~~vVi 142 (696)
T 2ykg_A 138 TLMIF 142 (696)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88774
No 152
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=68.70 E-value=90 Score=31.23 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=23.0
Q ss_pred CceEEEeecCcccccCCCChhHHHHHhhhhcCCCcCccccEEEe
Q 011060 285 GWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHII 328 (494)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~i~ 328 (494)
...+|+|..-. ..++..+|..++..... |-.|.|.
T Consensus 101 ~~~~lfV~nL~----~~~te~~L~~~F~~~G~-----I~~v~i~ 135 (437)
T 3pgw_S 101 AFKTLFVARVN----YDTTESKLRREFEVYGP-----IKRIHMV 135 (437)
T ss_pred CCCEEEEeCCC----CCCCHHHHHHHHHHcCC-----eeEEEee
Confidence 35678886432 35788999999887655 3445554
No 153
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=68.61 E-value=1.3 Score=28.27 Aligned_cols=16 Identities=38% Similarity=0.831 Sum_probs=15.0
Q ss_pred cccCCCCccccCCCCC
Q 011060 479 CFNCGKSGHRASECPN 494 (494)
Q Consensus 479 c~~c~~~gh~~~~cp~ 494 (494)
|-+|---|||+.||+.
T Consensus 23 Cd~CEvFGH~t~~Cnd 38 (42)
T 2pzo_E 23 CEICEMFGHWATNCND 38 (42)
T ss_dssp ETTTTEESSCGGGCCT
T ss_pred cccccccCcccccCCc
Confidence 9999999999999974
No 154
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=67.23 E-value=9.7 Score=41.64 Aligned_cols=69 Identities=9% Similarity=0.036 Sum_probs=51.4
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc-c-----c-------
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-A-----A------- 148 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~-~-----~------- 148 (494)
.+..++|.|+|+..|.+.++.+.. ++.+.++.|+++.++|.... ..+|+|+|+- + .
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~~ 196 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLYK 196 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcch
Confidence 457899999999999988887763 57899999999988766553 3589999971 1 1
Q ss_pred ccCCCCCccEEEE
Q 011060 149 RGLDIPNVDLIIH 161 (494)
Q Consensus 149 ~Gidip~v~~VI~ 161 (494)
.-++...+.++|.
T Consensus 197 ~~l~lr~~~~lVl 209 (844)
T 1tf5_A 197 EQMVQRPLHFAVI 209 (844)
T ss_dssp GGCCCCCCCEEEE
T ss_pred hhhcccCCCEEEE
Confidence 1355667777663
No 155
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=66.76 E-value=9.6 Score=41.66 Aligned_cols=69 Identities=7% Similarity=-0.050 Sum_probs=51.3
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccc------ccc-----
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARG----- 150 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~------~~G----- 150 (494)
.+.+++|.++|+..|.++++.+.. ++.+.++.|+++.++|.... ..+|+|+|+-- ...
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~~~ 187 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAFSP 187 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhccH
Confidence 457899999999999988887763 47899999999987665543 36899999732 222
Q ss_pred --CCCCCccEEEE
Q 011060 151 --LDIPNVDLIIH 161 (494)
Q Consensus 151 --idip~v~~VI~ 161 (494)
+....+.++|.
T Consensus 188 ~~~~~~~l~~lVl 200 (853)
T 2fsf_A 188 EERVQRKLHYALV 200 (853)
T ss_dssp GGCCCCSCCEEEE
T ss_pred hHhcccCCcEEEE
Confidence 45567777664
No 156
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=65.58 E-value=7.6 Score=44.21 Aligned_cols=70 Identities=19% Similarity=0.178 Sum_probs=51.0
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc-----cccccC-CC
Q 011060 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARGL-DI 153 (494)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd-----~~~~Gi-di 153 (494)
++..+..+.++||.+||+..+.+.+..+.+ .-.+..++|+++ .+...+|+|+|+ .+.++- .+
T Consensus 220 i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l 288 (1108)
T 3l9o_A 220 IAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVM 288 (1108)
T ss_dssp HHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHH
T ss_pred HHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCcccc
Confidence 334445678999999999999999999986 346888999876 234678999994 444443 35
Q ss_pred CCccEEEE
Q 011060 154 PNVDLIIH 161 (494)
Q Consensus 154 p~v~~VI~ 161 (494)
.++.+||.
T Consensus 289 ~~l~lVVI 296 (1108)
T 3l9o_A 289 REVAWVIF 296 (1108)
T ss_dssp HHEEEEEE
T ss_pred ccCCEEEE
Confidence 66777763
No 157
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=61.88 E-value=6.6 Score=27.47 Aligned_cols=20 Identities=0% Similarity=-0.250 Sum_probs=17.4
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 011060 416 RSSRSWGSDDEDGFSSSRGG 435 (494)
Q Consensus 416 ~~~~~~g~~g~~~~~~~~~~ 435 (494)
..|++|++.||++++|+...
T Consensus 31 ~~C~~Cg~~GH~ar~C~~~~ 50 (60)
T 1cl4_A 31 GLCPRCKRGKHWANECKSKT 50 (60)
T ss_dssp CSCSSCSSCSSCSTTCCCTT
T ss_pred cceeECCCCCCccCcCCCcc
Confidence 57999999999999998653
No 158
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=61.78 E-value=15 Score=40.50 Aligned_cols=58 Identities=10% Similarity=0.092 Sum_probs=45.5
Q ss_pred HHHHHccCCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc
Q 011060 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 81 ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd 145 (494)
++..+ .+..++|.++|+..|.+.++.+.. ++.+.++.|+++.++|.... ..+|+++|+
T Consensus 146 ~l~aL-~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTp 208 (922)
T 1nkt_A 146 YLNAL-AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTN 208 (922)
T ss_dssp HHHHT-TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HHHHH-hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 33434 457899999999999988887763 57899999999988776654 358999997
No 159
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=61.70 E-value=8.6 Score=41.46 Aligned_cols=68 Identities=22% Similarity=0.351 Sum_probs=49.5
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc-----cccccC-CCCCc
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARGL-DIPNV 156 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd-----~~~~Gi-dip~v 156 (494)
.+.++|+.+|++..+.++++.+++ ++.+..+||+++...+. .+..+|+|+|+ .+.... .+.++
T Consensus 67 ~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~-------~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~ 139 (720)
T 2zj8_A 67 QGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEW-------LGKYDIIIATAEKFDSLLRHGSSWIKDV 139 (720)
T ss_dssp HCSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGG-------GGGCSEEEECHHHHHHHHHHTCTTGGGE
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccc-------cCCCCEEEECHHHHHHHHHcChhhhhcC
Confidence 468999999999999999998863 47889999987654431 13678999997 222222 25677
Q ss_pred cEEEE
Q 011060 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
++||.
T Consensus 140 ~~vIi 144 (720)
T 2zj8_A 140 KILVA 144 (720)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 77774
No 160
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=60.13 E-value=14 Score=40.82 Aligned_cols=54 Identities=13% Similarity=0.049 Sum_probs=44.3
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~ 146 (494)
.+.+++|.++|+..|.+.++.+.. ++.+..+.|+++.++|.... ..+|+|+|+-
T Consensus 119 ~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTpg 177 (997)
T 2ipc_A 119 TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTNS 177 (997)
T ss_dssp TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEHH
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECch
Confidence 457899999999999998888764 47899999999988777665 3689999963
No 161
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=59.91 E-value=7.3 Score=30.68 Aligned_cols=44 Identities=11% Similarity=0.108 Sum_probs=33.8
Q ss_pred HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCC
Q 011060 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 122 (494)
Q Consensus 79 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~ 122 (494)
...+..+.++.++||||.+-..+...+..|.. ++.+..|.|++.
T Consensus 46 ~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 46 REKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 33344445667999999998888888888885 678899999863
No 162
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=59.36 E-value=73 Score=27.14 Aligned_cols=62 Identities=16% Similarity=0.263 Sum_probs=46.0
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccccccCCCCCccEEEEeCC
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 164 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~v~~VI~~~~ 164 (494)
...+.|.|++...+..+.+.|.. ++++..+..+-. .+. -.|.|.|--.+.|+-+ +.||.+++
T Consensus 61 ~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~~---~~v~v~t~~~~KGlEf---~~V~~~~~ 123 (174)
T 3dmn_A 61 RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RLA---PGVIVVPSFLAKGLEF---DAVIVWNA 123 (174)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CCC---SSEEEEEGGGCTTCCE---EEEEEETC
T ss_pred CCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------ccC---CCeEEEEccccCCcCC---CEEEEecC
Confidence 46788999999999999999985 577766655421 122 3588999999999887 55666554
No 163
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=59.33 E-value=9.9 Score=40.84 Aligned_cols=76 Identities=17% Similarity=0.234 Sum_probs=53.3
Q ss_pred HHHHHHHccCCeEEEEeCChHHHHHHHHHHHc----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc-----cccc
Q 011060 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR 149 (494)
Q Consensus 79 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd-----~~~~ 149 (494)
..+++.+..+.++|+.+|++..+.++++.++. ++.+..++|+....++ ..+..+|+|+|+ .+..
T Consensus 59 l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l~~ 131 (702)
T 2p6r_A 59 MAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSEKADSLIRN 131 (702)
T ss_dssp HHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHHHT
T ss_pred HHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHHHHHHHHHc
Confidence 33444444578999999999999999998853 4678899998765432 123678999996 2333
Q ss_pred cCC-CCCccEEEE
Q 011060 150 GLD-IPNVDLIIH 161 (494)
Q Consensus 150 Gid-ip~v~~VI~ 161 (494)
... +.++++||.
T Consensus 132 ~~~~l~~~~~vIi 144 (702)
T 2p6r_A 132 RASWIKAVSCLVV 144 (702)
T ss_dssp TCSGGGGCCEEEE
T ss_pred ChhHHhhcCEEEE
Confidence 333 667888874
No 164
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=59.03 E-value=4.4 Score=42.18 Aligned_cols=70 Identities=16% Similarity=0.122 Sum_probs=47.9
Q ss_pred CeEEEEeCChHHHHHHHHHHHc---------cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccc-----cc--cCC
Q 011060 89 GKTIVFTQTKRDADEVSLALTS---------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-----AR--GLD 152 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~---------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~-----~~--Gid 152 (494)
.++||.+||+..+.++++.+.+ .+.+..++++....... +.+.....+|||+|+-. .+ ...
T Consensus 147 ~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 223 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAM---NKMNKLRPNIVIATPGRLIDVLEKYSNKF 223 (563)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHH---HHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred eeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHH---HHHhcCCCCEEEECcHHHHHHHHhccccc
Confidence 3899999999999999888874 14477778877655433 33333467899999732 12 234
Q ss_pred CCCccEEEE
Q 011060 153 IPNVDLIIH 161 (494)
Q Consensus 153 ip~v~~VI~ 161 (494)
+..+.+||.
T Consensus 224 ~~~~~~lVi 232 (563)
T 3i5x_A 224 FRFVDYKVL 232 (563)
T ss_dssp CTTCCEEEE
T ss_pred cccceEEEE
Confidence 667887764
No 165
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=58.41 E-value=4.5 Score=42.39 Aligned_cols=70 Identities=16% Similarity=0.119 Sum_probs=47.9
Q ss_pred CeEEEEeCChHHHHHHHHHHHc---------cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc-----ccc--cCC
Q 011060 89 GKTIVFTQTKRDADEVSLALTS---------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AAR--GLD 152 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~---------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~-----~~~--Gid 152 (494)
.++||.+||+..+.++++.+.+ .+.+..++++....... +.+.....+|||+|+- +.+ ...
T Consensus 96 ~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~ 172 (579)
T 3sqw_A 96 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAM---NKMNKLRPNIVIATPGRLIDVLEKYSNKF 172 (579)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHH---HHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred CeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHH---HHHhcCCCCEEEECHHHHHHHHHhccccc
Confidence 4899999999999998888764 14567778877655443 3333345789999963 222 345
Q ss_pred CCCccEEEE
Q 011060 153 IPNVDLIIH 161 (494)
Q Consensus 153 ip~v~~VI~ 161 (494)
+..+++||.
T Consensus 173 ~~~~~~lVi 181 (579)
T 3sqw_A 173 FRFVDYKVL 181 (579)
T ss_dssp CTTCCEEEE
T ss_pred cccCCEEEE
Confidence 667887763
No 166
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=57.17 E-value=13 Score=29.92 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=30.6
Q ss_pred HHHHccC-CeEEEEe-CChHHHHHHHHHHHc-cCcEEEEeCCCC
Q 011060 82 ITVYAKG-GKTIVFT-QTKRDADEVSLALTS-IIASEALHGDIS 122 (494)
Q Consensus 82 l~~~~~~-~~~iVF~-~t~~~~~~l~~~l~~-~~~~~~lhg~~~ 122 (494)
+..+.++ .++|||| .+-..+..++..|.. ++.+..|.|++.
T Consensus 82 ~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 82 AAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp HHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred HHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 3334456 7999999 576677778888874 678999999874
No 167
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=55.99 E-value=4 Score=43.72 Aligned_cols=69 Identities=17% Similarity=0.248 Sum_probs=46.3
Q ss_pred CeEEEEeCChHHHHHH-HHHHHc----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccc------------cccC
Q 011060 89 GKTIVFTQTKRDADEV-SLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------------ARGL 151 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l-~~~l~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~------------~~Gi 151 (494)
.++||.+|++..+.++ ++.|.+ .+.+..+||+.+..++...+. +..+|||+|+-. ...+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 7899999999999888 777774 278999999987654433332 357899999632 2235
Q ss_pred CCCCccEEEE
Q 011060 152 DIPNVDLIIH 161 (494)
Q Consensus 152 dip~v~~VI~ 161 (494)
.+..+++||.
T Consensus 133 ~~~~~~lvVi 142 (699)
T 4gl2_A 133 QLSDFSLIII 142 (699)
T ss_dssp CGGGCSEEEE
T ss_pred ecccCcEEEE
Confidence 6678888773
No 168
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=53.57 E-value=14 Score=28.76 Aligned_cols=45 Identities=9% Similarity=0.062 Sum_probs=33.6
Q ss_pred HHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cC-cEEEEeCCCC
Q 011060 78 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 122 (494)
Q Consensus 78 l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~-~~~~lhg~~~ 122 (494)
+...+..+.++.++||||.+-..+..++..|.. ++ .+..|.|++.
T Consensus 48 l~~~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 48 LGAFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp HHHHHHHSCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HHHHHHhcCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 334444455678999999998788888888875 66 4888888863
No 169
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=52.56 E-value=3.9 Score=26.31 Aligned_cols=16 Identities=38% Similarity=0.831 Sum_probs=15.0
Q ss_pred cccCCCCccccCCCCC
Q 011060 479 CFNCGKSGHRASECPN 494 (494)
Q Consensus 479 c~~c~~~gh~~~~cp~ 494 (494)
|-.|---|||..||+.
T Consensus 23 Ce~CEVFGH~t~eC~d 38 (42)
T 3e2u_E 23 CEICEMFGHWATNCND 38 (42)
T ss_dssp ETTTTEESSCGGGCCT
T ss_pred cccceecccccccCCc
Confidence 9999999999999974
No 170
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=51.96 E-value=33 Score=25.15 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=30.3
Q ss_pred HHHHHHHH--ccCCeEEEEeCChHHHHHHHHHHHc-cCc-EEEEeCCC
Q 011060 78 LSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDI 121 (494)
Q Consensus 78 l~~ll~~~--~~~~~~iVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~ 121 (494)
+...+..+ .++.+++|||.+-..+...+..|.. ++. +..+ |++
T Consensus 29 l~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~ 75 (85)
T 2jtq_A 29 VKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGL 75 (85)
T ss_dssp HHHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EET
T ss_pred HHHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCH
Confidence 33444445 4567899999998888888888875 564 5556 764
No 171
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=51.61 E-value=15 Score=37.41 Aligned_cols=67 Identities=12% Similarity=0.187 Sum_probs=48.3
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc-----CcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccc-ccc--CCCCCccEE
Q 011060 88 GGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-ARG--LDIPNVDLI 159 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~-~~G--idip~v~~V 159 (494)
..++||.+||+..+++.++.+.+. ..+..+|++.+..++ ..+..+|+|+|.-. ..- ..+.++.+|
T Consensus 157 ~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~~l~~~~~~~~~~~~li 229 (510)
T 2oca_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGTWQTVVKQPKEWFSQFGMM 229 (510)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEEHHHHTTSCGGGGGGEEEE
T ss_pred CCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccCCcEEEEeHHHHhhchhhhhhcCCEE
Confidence 349999999999999999998753 367889998776554 34568899999632 221 345566776
Q ss_pred EE
Q 011060 160 IH 161 (494)
Q Consensus 160 I~ 161 (494)
|.
T Consensus 230 Ii 231 (510)
T 2oca_A 230 MN 231 (510)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 172
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=51.20 E-value=22 Score=40.02 Aligned_cols=69 Identities=19% Similarity=0.150 Sum_probs=49.1
Q ss_pred HHHHccCCeEEEEeCChHHHHHHHHHHHcc-CcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc-----ccccc-CCCC
Q 011060 82 ITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIP 154 (494)
Q Consensus 82 l~~~~~~~~~iVF~~t~~~~~~l~~~l~~~-~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd-----~~~~G-idip 154 (494)
+..+..+.++||.+||+..+.+.+..|.+. -.+..++|+.+.. ...+|+|+|+ .+.++ ..+.
T Consensus 123 ~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~~~-----------~~~~IvV~Tpe~L~~~L~~~~~~l~ 191 (1010)
T 2xgj_A 123 AQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITIN-----------PDAGCLVMTTEILRSMLYRGSEVMR 191 (1010)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCEEC-----------TTCSEEEEEHHHHHHHHHHTCTTGG
T ss_pred HHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCccC-----------CCCCEEEEcHHHHHHHHHcCcchhh
Confidence 334456789999999999999999988862 3678899987532 2467999986 23333 4556
Q ss_pred CccEEEE
Q 011060 155 NVDLIIH 161 (494)
Q Consensus 155 ~v~~VI~ 161 (494)
++.+||.
T Consensus 192 ~l~lVVi 198 (1010)
T 2xgj_A 192 EVAWVIF 198 (1010)
T ss_dssp GEEEEEE
T ss_pred cCCEEEE
Confidence 7777773
No 173
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=51.11 E-value=26 Score=31.74 Aligned_cols=62 Identities=11% Similarity=0.117 Sum_probs=34.2
Q ss_pred CceEEEeecCcccccCCCChhHHHHHhhhhcCCCcCccccEEEeecC-c---eeeEEeecC-HHHHHHHHhhcC
Q 011060 285 GWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADD-R---VQGAVFDLP-EEIAKELLNKQI 353 (494)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~i~~~~-~---~~gs~fdvp-~~~a~~~~~~~~ 353 (494)
...+|+|..-. ..++..+|..++..... ..|-.|.|..+. + ...+||+.. .+.|++.++.+.
T Consensus 67 ~~~~lfVgnL~----~~~te~~L~~~F~~~G~---~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~ln 133 (229)
T 3q2s_C 67 KRIALYIGNLT----WWTTDEDLTEAVHSLGV---NDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP 133 (229)
T ss_dssp --CEEEEESCC----TTCCHHHHHHHHHTTTC---CCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTST
T ss_pred CccEEEEeCCC----CCCCHHHHHHHHHHHCC---cceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 35578886432 35788999998876551 135567776541 1 223555543 345566665433
No 174
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=50.45 E-value=15 Score=28.70 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=31.3
Q ss_pred HHHHccCCeEEEEeCChHHHHHHHHHHHc-cCc-EEEEeCCC
Q 011060 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDI 121 (494)
Q Consensus 82 l~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~ 121 (494)
...+.++.++||||.+-..+...+..|.. ++. +..|.|++
T Consensus 46 ~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 46 SSSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp HHHSCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred HhcCCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 34455678899999998888888888875 664 88888885
No 175
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=48.24 E-value=31 Score=36.77 Aligned_cols=64 Identities=19% Similarity=0.091 Sum_probs=47.7
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc--cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccc---ccccCCCCCccEEEE
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV---AARGLDIPNVDLIIH 161 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~---~~~Gidip~v~~VI~ 161 (494)
.+.++||.++|+..+.++++.+.+ ...+...+++.. ..+..+|+|+|+- ....+++.++++||.
T Consensus 256 ~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~-----------~~~~~~IlV~TPGrLl~~~~l~l~~l~~lVl 324 (666)
T 3o8b_A 256 QGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT-----------ITTGAPVTYSTYGKFLADGGCSGGAYDIIIC 324 (666)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE-----------ECCCCSEEEEEHHHHHHTTSCCTTSCSEEEE
T ss_pred CCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe-----------ccCCCCEEEECcHHHHhCCCcccCcccEEEE
Confidence 456999999999999999988764 455666677643 3557789999973 234567777888885
No 176
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=48.20 E-value=29 Score=31.40 Aligned_cols=60 Identities=17% Similarity=0.090 Sum_probs=41.9
Q ss_pred CccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCc-EEEEeCCCCHHHHHHHHhhccCCcEEEEEecc
Q 011060 71 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 71 ~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd 145 (494)
-.-|..+...++... ..++||+++++..++++++.+.+ .+. +..++++... ..+|+|+|.
T Consensus 118 G~GKT~~a~~~~~~~--~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~~-------------~~~i~v~T~ 179 (237)
T 2fz4_A 118 GSGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVSTY 179 (237)
T ss_dssp STTHHHHHHHHHHHS--CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCBC-------------CCSEEEEEH
T ss_pred CCCHHHHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCCC-------------cCCEEEEeH
Confidence 345655554444433 57999999999999999988876 445 7778887531 346788874
No 177
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=47.71 E-value=95 Score=32.94 Aligned_cols=83 Identities=22% Similarity=0.301 Sum_probs=57.9
Q ss_pred EEcCCccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHccC---cEEEEe--------------------CCC--
Q 011060 67 ISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII---ASEALH--------------------GDI-- 121 (494)
Q Consensus 67 ~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~---~~~~lh--------------------g~~-- 121 (494)
.-+....|..++..++... ..++||.++++..|.+++..|...+ .|..+- ...
T Consensus 34 ~g~tgs~kt~~~a~~~~~~--~~~~lvv~~~~~~A~ql~~el~~~~~~~~V~~fps~yd~~~pe~~~~~~d~~~~~~~~~ 111 (664)
T 1c4o_A 34 LGATGTGKTVTMAKVIEAL--GRPALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASI 111 (664)
T ss_dssp EECTTSCHHHHHHHHHHHH--TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTEEECCCCSC
T ss_pred EcCCCcHHHHHHHHHHHHh--CCCEEEEecCHHHHHHHHHHHHHHCCCCeEEEcCchhhccCcccccchhhhhhhhhccc
Confidence 3455667887887777654 4689999999999999999998643 233222 333
Q ss_pred C---HHHHHHHHhhccCCcEEEEEecccccccC
Q 011060 122 S---QHQRERTLNGFRQGKFTVLVATDVAARGL 151 (494)
Q Consensus 122 ~---~~~R~~~~~~F~~g~~~iLVaTd~~~~Gi 151 (494)
+ ..+|..++.++.++.-.|+|+|-.+..++
T Consensus 112 ~~~i~~~R~~~l~~L~~~~~~ivV~s~~~l~~~ 144 (664)
T 1c4o_A 112 NPEIERLRHSTTRSLLTRRDVIVVASVSAIYGL 144 (664)
T ss_dssp CHHHHHHHHHHHHHHHHCSCEEEEEEGGGCSCC
T ss_pred CHHHHHHHHHHHHHHHhCCCeEEEecHHHHhcC
Confidence 2 45788888888766666888876554554
No 178
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=47.00 E-value=15 Score=39.39 Aligned_cols=83 Identities=17% Similarity=0.271 Sum_probs=54.9
Q ss_pred ccHHHHH-HHHHHHHc-cCCeEEEEeCChHHHHHHHHHHHc----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc
Q 011060 72 TSKRTIL-SDLITVYA-KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 72 ~~k~~~l-~~ll~~~~-~~~~~iVF~~t~~~~~~l~~~l~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd 145 (494)
.-|..+. ..+++.+. .+.++|+.+|++..+.++++.++. ++.+..++|+....++ .+ ...+|+|+|+
T Consensus 57 sGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-----~~--~~~~Iiv~Tp 129 (715)
T 2va8_A 57 SGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDA-----WL--KNYDIIITTY 129 (715)
T ss_dssp SCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCG-----GG--GGCSEEEECH
T ss_pred CcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchh-----hc--CCCCEEEEcH
Confidence 3454433 33333332 568999999999999999988853 4678889998765442 12 2678999997
Q ss_pred -----cccccCC-CCCccEEEE
Q 011060 146 -----VAARGLD-IPNVDLIIH 161 (494)
Q Consensus 146 -----~~~~Gid-ip~v~~VI~ 161 (494)
.+..... +.++++||.
T Consensus 130 e~l~~~~~~~~~~l~~~~~vIi 151 (715)
T 2va8_A 130 EKLDSLWRHRPEWLNEVNYFVL 151 (715)
T ss_dssp HHHHHHHHHCCGGGGGEEEEEE
T ss_pred HHHHHHHhCChhHhhccCEEEE
Confidence 2223333 567788774
No 179
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=46.43 E-value=11 Score=30.63 Aligned_cols=43 Identities=14% Similarity=0.147 Sum_probs=32.0
Q ss_pred HHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCc-EEEEeCCCC
Q 011060 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (494)
Q Consensus 80 ~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~~ 122 (494)
.++..+.++.++||||.+-..+..++..|.. ++. +..|.|++.
T Consensus 74 ~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 74 QVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp HHTTTCCTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred HHHhhCCCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 3333344668999999998888888888875 664 888999863
No 180
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=45.62 E-value=11 Score=30.34 Aligned_cols=44 Identities=20% Similarity=0.191 Sum_probs=32.0
Q ss_pred HHHHHHHHccCCeEEEEeCChHH--HHHHHHHHHc-cCcEEEEeCCC
Q 011060 78 LSDLITVYAKGGKTIVFTQTKRD--ADEVSLALTS-IIASEALHGDI 121 (494)
Q Consensus 78 l~~ll~~~~~~~~~iVF~~t~~~--~~~l~~~l~~-~~~~~~lhg~~ 121 (494)
+...+..+.++.++||||.+-.. +..++..|.. ++.+..|.|++
T Consensus 61 l~~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~ 107 (124)
T 3flh_A 61 LATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGAL 107 (124)
T ss_dssp HHHHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHH
T ss_pred HHHHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcH
Confidence 33334444566789999998766 7778888874 78888888886
No 181
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=43.23 E-value=31 Score=38.69 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=39.8
Q ss_pred HHccCCeEEEEeCChHHHHHHHHHHHc---cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc
Q 011060 84 VYAKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 84 ~~~~~~~~iVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd 145 (494)
....+.++||.+|++..+.++++.|.+ .+.+..+||+.+ .+...+|+|+|+
T Consensus 78 ~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~-----------~~~~~~IlV~Tp 131 (997)
T 4a4z_A 78 AHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQ-----------INPDANCLIMTT 131 (997)
T ss_dssp HHHTTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCE-----------ECTTSSEEEEEH
T ss_pred HHhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCc-----------cCCCCCEEEECH
Confidence 334567899999999999999999986 357889999874 234567888885
No 182
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=43.06 E-value=30 Score=34.73 Aligned_cols=58 Identities=17% Similarity=0.082 Sum_probs=43.1
Q ss_pred cHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc-cCc-EEEEeCCCCHHHHHHHHhhccCCcEEEEEecc
Q 011060 73 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 73 ~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd 145 (494)
-|..+...++... ..++||.||++..+.+.++.+.+ .+. +..+||+... ..+|+|+|.
T Consensus 120 GKT~~~l~~i~~~--~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv~T~ 179 (472)
T 2fwr_A 120 GKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVSTY 179 (472)
T ss_dssp CHHHHHHHHHHHH--CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEEEEH
T ss_pred CHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEEEEc
Confidence 4555444444433 57999999999999999998886 466 8889998642 356899985
No 183
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=42.85 E-value=60 Score=31.08 Aligned_cols=67 Identities=13% Similarity=0.172 Sum_probs=46.0
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-----cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecccc------cccCCCCC
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPN 155 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~------~~Gidip~ 155 (494)
...++||.+||+..++++++.+.+ .+.+..++++.... ......+|+|+|.-. ...+++..
T Consensus 74 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 145 (395)
T 3pey_A 74 ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEK--------NKQINAQVIVGTPGTVLDLMRRKLMQLQK 145 (395)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCT--------TSCBCCSEEEECHHHHHHHHHTTCBCCTT
T ss_pred CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhh--------hccCCCCEEEEcHHHHHHHHHcCCccccc
Confidence 356899999999999999988874 24566666653221 122356799999632 33456778
Q ss_pred ccEEEE
Q 011060 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+++||.
T Consensus 146 ~~~iIi 151 (395)
T 3pey_A 146 IKIFVL 151 (395)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888774
No 184
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=42.75 E-value=26 Score=34.15 Aligned_cols=83 Identities=8% Similarity=0.038 Sum_probs=51.2
Q ss_pred ccHHHH-HHHHHHHHc---cCCeEEEEeCChHHHHHHHHHHHc------cCcEEEEeCCCCHHHHHHHHhhccCCcEEEE
Q 011060 72 TSKRTI-LSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVL 141 (494)
Q Consensus 72 ~~k~~~-l~~ll~~~~---~~~~~iVF~~t~~~~~~l~~~l~~------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iL 141 (494)
.-|..+ +..++..+. ...++||.+||+..+.++++.+.+ .+.+...+++..... ......+|+
T Consensus 75 sGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~iv 147 (412)
T 3fht_A 75 TGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-------GQKISEQIV 147 (412)
T ss_dssp SCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCT-------TCCCCCSEE
T ss_pred chHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhh-------hhcCCCCEE
Confidence 345543 334444432 234899999999999999887764 245666666543221 123356799
Q ss_pred Eeccccc-------ccCCCCCccEEEE
Q 011060 142 VATDVAA-------RGLDIPNVDLIIH 161 (494)
Q Consensus 142 VaTd~~~-------~Gidip~v~~VI~ 161 (494)
|+|+-.- ..+++..+++||.
T Consensus 148 v~T~~~l~~~~~~~~~~~~~~~~~iVi 174 (412)
T 3fht_A 148 IGTPGTVLDWCSKLKFIDPKKIKVFVL 174 (412)
T ss_dssp EECHHHHHHHHTTSCSSCGGGCCEEEE
T ss_pred EECchHHHHHHHhcCCcChhhCcEEEE
Confidence 9996321 3466677888774
No 185
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=40.82 E-value=1.4e+02 Score=30.36 Aligned_cols=111 Identities=12% Similarity=0.082 Sum_probs=73.8
Q ss_pred EEEEcCCccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHccC--cEEEEe-------CCCC-----HHHHHHHH
Q 011060 65 YAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII--ASEALH-------GDIS-----QHQRERTL 130 (494)
Q Consensus 65 ~~~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~--~~~~lh-------g~~~-----~~~R~~~~ 130 (494)
...-+....|.-++..+++.. +.++||.|++...+.+++..|...+ .|..+- -..+ ..+|..++
T Consensus 18 ~l~g~~gs~ka~~~a~l~~~~--~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~~~~~~Rl~~l 95 (483)
T 3hjh_A 18 LLGELTGAACATLVAEIAERH--AGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTL 95 (483)
T ss_dssp EEECCCTTHHHHHHHHHHHHS--SSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCHHHHHHHHHHH
T ss_pred EEeCCCchHHHHHHHHHHHHh--CCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCChHHHHHHHHHH
Confidence 344455667777777777643 5689999999999999999998532 233321 1111 24688889
Q ss_pred hhccCCcEEEEEecccccccCCCC-----CccEEEEeCCCCCHhHHHHHhhc
Q 011060 131 NGFRQGKFTVLVATDVAARGLDIP-----NVDLIIHYELPNDPETFVHRSGR 177 (494)
Q Consensus 131 ~~F~~g~~~iLVaTd~~~~Gidip-----~v~~VI~~~~P~~~~~y~qr~GR 177 (494)
.++.+++..|+|+|-.+....=.| ...+.+..+-..+.+.+.++.=.
T Consensus 96 ~~L~~~~~~ivv~sv~al~~~~~p~~~~~~~~~~l~~G~~~~~~~l~~~L~~ 147 (483)
T 3hjh_A 96 YQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDS 147 (483)
T ss_dssp HHGGGCCSSEEEEEHHHHHBCCCCHHHHHHTCEEEETTCCCCHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEEHHHHhhcCCCHHHHhhCeEEEECCCCcCHHHHHHHHHH
Confidence 988887777888875444443333 22456667777788888777544
No 186
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=40.63 E-value=12 Score=29.22 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=30.3
Q ss_pred HHccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCC
Q 011060 84 VYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDI 121 (494)
Q Consensus 84 ~~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~ 121 (494)
.+.++.+++|||.+-..+...+..|.+ +|.+..|.|++
T Consensus 52 ~l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 52 SFNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp GCCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred hhcCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 345678999999998888888888885 78887787775
No 187
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=40.57 E-value=34 Score=31.70 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=35.7
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc-----CcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc
Q 011060 88 GGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd 145 (494)
..++||.++|+..+++.++.+.+. ..+..++++....+ -.....+|+|+|.
T Consensus 157 ~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~I~v~T~ 212 (282)
T 1rif_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD-------KYKNDAPVVVGTW 212 (282)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT-------CCCTTCSEEEECH
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh-------hhccCCcEEEEch
Confidence 349999999999999998888752 24566666653322 1124567999996
No 188
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=39.98 E-value=22 Score=27.17 Aligned_cols=37 Identities=8% Similarity=0.178 Sum_probs=30.4
Q ss_pred HccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCC
Q 011060 85 YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDI 121 (494)
Q Consensus 85 ~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~ 121 (494)
+.++.++||||.+-..+...+..|.. ++.+..|.|++
T Consensus 53 l~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 53 FNDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp SCTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 34668999999998888888888885 67888888875
No 189
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=39.05 E-value=20 Score=27.57 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=30.2
Q ss_pred HccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCC
Q 011060 85 YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDI 121 (494)
Q Consensus 85 ~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~ 121 (494)
+.++.++||||.+-..+...+..|.. ++.+..|.|++
T Consensus 53 l~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 34567899999998888888888885 67888888875
No 190
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=37.84 E-value=2.4e+02 Score=29.74 Aligned_cols=108 Identities=18% Similarity=0.245 Sum_probs=72.3
Q ss_pred EEcCCccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHccC---cEEEEe--------------------CCC--
Q 011060 67 ISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII---ASEALH--------------------GDI-- 121 (494)
Q Consensus 67 ~~~~~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~~~---~~~~lh--------------------g~~-- 121 (494)
.-+....|.-++..++... ..++||.+++...|.+++..|...+ .|..+- -..
T Consensus 38 ~g~~gs~k~~~~a~~~~~~--~~~~lvv~~~~~~A~~l~~el~~~~~~~~v~~fps~yd~~~pe~~~~~~d~y~~~~~~~ 115 (661)
T 2d7d_A 38 LGATGTGKTFTVSNLIKEV--NKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASI 115 (661)
T ss_dssp EECTTSCHHHHHHHHHHHH--CCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEECCCEEEEECCEEETTTTEEECCEEEE
T ss_pred ECcCCcHHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHHHHHHcCCCcEEEccccccccCccccCCcchhhhhhhccc
Confidence 3455667887887777654 4689999999999999999998643 233332 111
Q ss_pred C---HHHHHHHHhhccCCcEEEEEecccccccCCCCC----ccEEEEeCCCCCHhHHHHHhh
Q 011060 122 S---QHQRERTLNGFRQGKFTVLVATDVAARGLDIPN----VDLIIHYELPNDPETFVHRSG 176 (494)
Q Consensus 122 ~---~~~R~~~~~~F~~g~~~iLVaTd~~~~Gidip~----v~~VI~~~~P~~~~~y~qr~G 176 (494)
+ ..+|..++.++.+++-.|+|+|-.+-.++--|+ ..+.+..+-..+.+.+.++.=
T Consensus 116 ~~~i~~~Rl~~l~~L~~~~~~ivV~sv~al~~l~~~~~~~~~~~~l~~G~~~~~~~l~~~L~ 177 (661)
T 2d7d_A 116 NDEIDKLRHSATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLRTEMEIERNELLRKLV 177 (661)
T ss_dssp CHHHHHHHHHHHHHHHHCSCEEEEECGGGGSCBCCHHHHHHHCEEEETTCBCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCeEEEecHHHHcCCCCHHHHHhccEEEeCCCEeCHHHHHHHHH
Confidence 1 457888998887666568888865556653332 234556666667777777654
No 191
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=36.15 E-value=34 Score=25.72 Aligned_cols=36 Identities=11% Similarity=0.150 Sum_probs=29.1
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCC
Q 011060 86 AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 122 (494)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~ 122 (494)
.+ .+++|||.+-..+...+..|.. ++.+..|.|++.
T Consensus 52 ~~-~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 52 PR-RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp CS-SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CC-CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 45 7899999998888888888875 777878888863
No 192
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=34.90 E-value=58 Score=25.28 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=29.4
Q ss_pred HccCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCC
Q 011060 85 YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDI 121 (494)
Q Consensus 85 ~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~ 121 (494)
+.++.++||||.+-..+...+..|.. ++....|.|++
T Consensus 53 ~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~ 90 (110)
T 2k0z_A 53 QHKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNV 90 (110)
T ss_dssp SCSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCG
T ss_pred cCCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCH
Confidence 34668899999998888888888875 66557788885
No 193
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=34.40 E-value=2.3e+02 Score=24.60 Aligned_cols=125 Identities=11% Similarity=0.126 Sum_probs=75.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEec----ccccccCCCCCccEEEEe
Q 011060 88 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT----DVAARGLDIPNVDLIIHY 162 (494)
Q Consensus 88 ~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaT----d~~~~Gidip~v~~VI~~ 162 (494)
..+++++++.....+.+.+.+.+ ...+..+.+++.... ...+.+ +...+|+||- ..+..-+++| ||..
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v--~~a~~~-~~~~dVIISRGgta~~lr~~~~iP----VV~I 76 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRAS--KIAFGL-QDEVDAIISRGATSDYIKKSVSIP----SISI 76 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHH--HHHHHH-TTTCSEEEEEHHHHHHHHTTCSSC----EEEE
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHH--HHHHHh-cCCCeEEEECChHHHHHHHhCCCC----EEEE
Confidence 35788888888777755554443 346667777764332 333344 5567899974 3455556666 4433
Q ss_pred CCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccCCCChHHHHH
Q 011060 163 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 223 (494)
Q Consensus 163 ~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~ 223 (494)
|.+..++++-+=++-+.+. -.+++-+. +-...++.+.+.++.++......+.+|+..
T Consensus 77 --~~s~~Dil~al~~a~~~~~-kIavvg~~-~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~ 133 (196)
T 2q5c_A 77 --KVTRFDTMRAVYNAKRFGN-ELALIAYK-HSIVDKHEIEAMLGVKIKEFLFSSEDEITT 133 (196)
T ss_dssp --CCCHHHHHHHHHHHGGGCS-EEEEEEES-SCSSCHHHHHHHHTCEEEEEEECSGGGHHH
T ss_pred --cCCHhHHHHHHHHHHhhCC-cEEEEeCc-chhhHHHHHHHHhCCceEEEEeCCHHHHHH
Confidence 4566777776666555443 23333332 223346778888898888877777666543
No 194
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=33.53 E-value=45 Score=27.53 Aligned_cols=37 Identities=8% Similarity=0.013 Sum_probs=27.7
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc-cC-cEEEEeCCCC
Q 011060 86 AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 122 (494)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~-~~-~~~~lhg~~~ 122 (494)
.++.++||||.+-..+...+..|.. ++ .+..|.|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 4567899999987777788888875 67 5888989873
No 195
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=32.30 E-value=56 Score=33.26 Aligned_cols=81 Identities=11% Similarity=0.147 Sum_probs=45.7
Q ss_pred cHHHH-HHHHHHHHcc---CCeEEEEeCChHHHHHHHHHHHcc-----CcEEEEeCCCCHHHHHHHHhhccCCcEEEEEe
Q 011060 73 SKRTI-LSDLITVYAK---GGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVA 143 (494)
Q Consensus 73 ~k~~~-l~~ll~~~~~---~~~~iVF~~t~~~~~~l~~~l~~~-----~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVa 143 (494)
-|..+ +..++..+.. ..++||.++++..++++++.+.+. +.+....++. .... .....+|+|+
T Consensus 170 GKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~Ivv~ 241 (508)
T 3fho_A 170 GKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDS---VPKG-----AKIDAQIVIG 241 (508)
T ss_dssp TSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC------------------CCCCSEEEE
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCc---cccc-----ccCCCCEEEE
Confidence 45443 3444444322 348999999999999999988752 2222222221 1111 1225679999
Q ss_pred cccc------cccCCCCCccEEEE
Q 011060 144 TDVA------ARGLDIPNVDLIIH 161 (494)
Q Consensus 144 Td~~------~~Gidip~v~~VI~ 161 (494)
|.-. ...+++..+++||.
T Consensus 242 T~~~l~~~l~~~~~~~~~~~lIIi 265 (508)
T 3fho_A 242 TPGTVMDLMKRRQLDARDIKVFVL 265 (508)
T ss_dssp CHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred CHHHHHHHHHcCCccccCCCEEEE
Confidence 9632 23457778888774
No 196
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=31.19 E-value=57 Score=26.37 Aligned_cols=37 Identities=5% Similarity=0.063 Sum_probs=29.0
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc-cCc-EEEEeCCCC
Q 011060 86 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (494)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~~ 122 (494)
.++.++||||.+=......+..|.. +|. +..|.|++.
T Consensus 72 ~~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 72 PENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 3567999999997777777888875 674 888888873
No 197
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=30.21 E-value=1.6e+02 Score=21.46 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=34.6
Q ss_pred cceEEEEEEcCCccHHHHHHHHHHHHccC----CeEEEEeCChHHHHHHHHHHHc
Q 011060 60 EGIKLYAISTTATSKRTILSDLITVYAKG----GKTIVFTQTKRDADEVSLALTS 110 (494)
Q Consensus 60 ~~i~~~~~~~~~~~k~~~l~~ll~~~~~~----~~~iVF~~t~~~~~~l~~~l~~ 110 (494)
.+....|....+.....+|..+++.+.+. -++-|-..|+++++..+..|.+
T Consensus 15 knfdytytvtteselqkvlnelmdyikkqgakrvrisitartkkeaekfaailik 69 (106)
T 1qys_A 15 KNFDYTYTVTTESELQKVLNELMDYIKKQGAKRVRISITARTKKEAEKFAAILIK 69 (106)
T ss_dssp CEEEEEEEESSSSHHHHHHHHHHHHHHHHCCSEEEEEEECSSHHHHHHHHHHHHH
T ss_pred cccceEEEEeeHHHHHHHHHHHHHHHHhcCCcEEEEEEEecchhHHHHHHHHHHH
Confidence 34555566666666666777777655332 2566888999999999887753
No 198
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=29.87 E-value=1.1e+02 Score=24.50 Aligned_cols=54 Identities=17% Similarity=0.336 Sum_probs=37.8
Q ss_pred eEEEEeCChHHHHHHHHHHHccCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEecc
Q 011060 90 KTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 90 ~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd 145 (494)
+.+|.+..+.++..|.+.+.-...+...+|.++++..+.+.+..+ ...|+|-||
T Consensus 5 ~~vIVVEGk~D~~~L~~~~~~~~~iI~t~Gsi~~~~l~~I~~~~~--~r~VIi~TD 58 (119)
T 2fcj_A 5 EKVIIVEGRSDKQKVAAVLNEPVVIVCTNGTISDARLEELADELE--GYDVYLLAD 58 (119)
T ss_dssp CEEEEESSHHHHHHHHHHBSSCCEEEECCSCCCHHHHHHHHHHTT--TSEEEEECC
T ss_pred CeEEEEechHHHHHHHHhcCCCCCEEEeCCccCHHHHHHHHHHhc--CCCEEEEEC
Confidence 568889999999988776532346778888888877666666654 334566665
No 199
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=29.26 E-value=41 Score=27.31 Aligned_cols=36 Identities=6% Similarity=0.075 Sum_probs=29.4
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc-cCc-EEEEeCCC
Q 011060 86 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDI 121 (494)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~ 121 (494)
.++.++||||.+-..+..++..|.. ++. +..|.|++
T Consensus 84 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~ 121 (139)
T 2hhg_A 84 QEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGF 121 (139)
T ss_dssp GSSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCH
Confidence 4567999999998888888888875 674 88998886
No 200
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=27.55 E-value=43 Score=27.66 Aligned_cols=38 Identities=16% Similarity=0.173 Sum_probs=29.9
Q ss_pred HccCCeEEEEeCCh--HHHHHHHHHHHc-cCcEEEEeCCCC
Q 011060 85 YAKGGKTIVFTQTK--RDADEVSLALTS-IIASEALHGDIS 122 (494)
Q Consensus 85 ~~~~~~~iVF~~t~--~~~~~l~~~l~~-~~~~~~lhg~~~ 122 (494)
+.++.++||||.+- ..+..++..|.. ++.+..|.|++.
T Consensus 69 l~~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 69 LSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp CCTTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 34567899999987 577778888874 788999999963
No 201
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=25.95 E-value=2.7e+02 Score=24.87 Aligned_cols=131 Identities=12% Similarity=0.051 Sum_probs=66.8
Q ss_pred HHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCC--CcEEEeccccccccc--cceEEEEEEcCCccHHHHHHHHH
Q 011060 7 EEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDN--PLNIDLVGNQDEKLA--EGIKLYAISTTATSKRTILSDLI 82 (494)
Q Consensus 7 ~~~l~~Il~~~~~~~q~il~SAT~~~~v~~~~~~~~~~--~~~v~~~~~~~~~~~--~~i~~~~~~~~~~~k~~~l~~ll 82 (494)
.+-.+.++........+..+.+++.+.+. .+++++.. ...|--.+.....+. ..+....+.... .++|..|.
T Consensus 25 ~~~~~~i~~e~~~~~~I~vi~~~le~av~-~a~~~~~~~~~dVIISRGgta~~Lr~~~~iPVV~I~vs~---~Dil~aL~ 100 (225)
T 2pju_A 25 FELFRDISLEFDHLANITPIQLGFEKAVT-YIRKKLANERCDAIIAAGSNGAYLKSRLSVPVILIKPSG---YDVLQFLA 100 (225)
T ss_dssp HHHHHHHHTTTTTTCEEEEECCCHHHHHH-HHHHHTTTSCCSEEEEEHHHHHHHHTTCSSCEEEECCCH---HHHHHHHH
T ss_pred HHHHHHHHHhhCCCceEEEecCcHHHHHH-HHHHHHhcCCCeEEEeCChHHHHHHhhCCCCEEEecCCH---HHHHHHHH
Confidence 34445555554444556666677755444 34444432 322211111111111 123344444433 34444433
Q ss_pred HHHccCC--eEEEEeCChHHHHHHHHHHHccCcEEEEeCCCCHHHHHHHHhhccCCcEEEEEec
Q 011060 83 TVYAKGG--KTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVAT 144 (494)
Q Consensus 83 ~~~~~~~--~~iVF~~t~~~~~~l~~~l~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaT 144 (494)
....... -++-|-+....++.+++.|.-.+....++. .++-+..+++.+...++++|..
T Consensus 101 ~a~~~~~kIavVg~~~~~~~~~~i~~ll~~~i~~~~~~~---~ee~~~~i~~l~~~G~~vVVG~ 161 (225)
T 2pju_A 101 KAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYIT---EEDARGQINELKANGTEAVVGA 161 (225)
T ss_dssp HTTCTTSCEEEEEESSCCHHHHHHHHHHTCCEEEEEESS---HHHHHHHHHHHHHTTCCEEEES
T ss_pred HHHhhCCcEEEEeCchhhhHHHHHHHHhCCceEEEEeCC---HHHHHHHHHHHHHCCCCEEECC
Confidence 3322223 345667778888889988876666666653 4555666666666566676664
No 202
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=24.81 E-value=2.9e+02 Score=24.38 Aligned_cols=40 Identities=10% Similarity=0.172 Sum_probs=31.2
Q ss_pred CccHHHHHHHHHHHHccCCeEEEEeCChHHHHHHHHHHHc
Q 011060 71 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 110 (494)
Q Consensus 71 ~~~k~~~l~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~~ 110 (494)
.......+..+.+.+.+++.+++++++....+.+.+.|.+
T Consensus 170 ~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~ 209 (255)
T 3mb5_A 170 LPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLRE 209 (255)
T ss_dssp SSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 3344556777777777888999999999998888888874
No 203
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=24.59 E-value=46 Score=27.41 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=29.4
Q ss_pred HccCCeEEEEeCChHHHHHHHHHHHc-cCc-EEEEeCCC
Q 011060 85 YAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDI 121 (494)
Q Consensus 85 ~~~~~~~iVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~ 121 (494)
+.++.++||||.+-..+..++..|.. ++. +..|.|++
T Consensus 53 l~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 91 (141)
T 3ilm_A 53 LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 91 (141)
T ss_dssp SCTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHH
T ss_pred CCCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHH
Confidence 44567899999998888888888875 664 77888885
No 204
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=24.44 E-value=1.3e+02 Score=32.71 Aligned_cols=59 Identities=15% Similarity=0.172 Sum_probs=37.8
Q ss_pred ccCCeEEEEeCChHHHHHHHHHHHc---cCcEEEEeCCCCHHHHHHHHhhc--------cCCcEEEEEecc
Q 011060 86 AKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGF--------RQGKFTVLVATD 145 (494)
Q Consensus 86 ~~~~~~iVF~~t~~~~~~l~~~l~~---~~~~~~lhg~~~~~~R~~~~~~F--------~~g~~~iLVaTd 145 (494)
....++||.|| ...+......+.+ .+.+..+||.............+ .....+|+|+|-
T Consensus 284 ~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy 353 (800)
T 3mwy_W 284 RQNGPHIIVVP-LSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTY 353 (800)
T ss_dssp SCCSCEEEECC-TTTHHHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECT
T ss_pred CCCCCEEEEEC-chHHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecH
Confidence 44678999999 5556666666664 46788889886544433333322 224567888885
No 205
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=24.10 E-value=1.9e+02 Score=26.32 Aligned_cols=56 Identities=14% Similarity=0.259 Sum_probs=40.8
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-cCcEEEEeCCCCHHHH-H----HHHhhccCCcEEEEEec
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQR-E----RTLNGFRQGKFTVLVAT 144 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~~~~lhg~~~~~~R-~----~~~~~F~~g~~~iLVaT 144 (494)
.+.++++.-.+.+.++++++.+.. +-.+..+..|++..+. + ++.++| |.++|||..
T Consensus 30 ~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~--G~iDiLVNN 91 (254)
T 4fn4_A 30 NDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETY--SRIDVLCNN 91 (254)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH--SCCCEEEEC
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc--CCCCEEEEC
Confidence 556788887888888999988875 5678889999876643 2 233333 678888865
No 206
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=23.93 E-value=3e+02 Score=24.18 Aligned_cols=70 Identities=7% Similarity=-0.018 Sum_probs=42.2
Q ss_pred cHHHHHHHHHHHHcc--CCeEEEEeCChHHHHHHHHHHHccCcEE--EEeC--------CCCHHHHHHHHhhccCCcEEE
Q 011060 73 SKRTILSDLITVYAK--GGKTIVFTQTKRDADEVSLALTSIIASE--ALHG--------DISQHQRERTLNGFRQGKFTV 140 (494)
Q Consensus 73 ~k~~~l~~ll~~~~~--~~~~iVF~~t~~~~~~l~~~l~~~~~~~--~lhg--------~~~~~~R~~~~~~F~~g~~~i 140 (494)
+-...|...++.... -.+++|...+=+.+..+++.+ .++.+. .+|- .|+++.|++..+ ...+|
T Consensus 27 NT~~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~-~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~----~G~~V 101 (201)
T 1vp8_A 27 NTEETLRLAVERAKELGIKHLVVASSYGDTAMKALEMA-EGLEVVVVTYHTGFVREGENTMPPEVEEELRK----RGAKI 101 (201)
T ss_dssp GHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHC-TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHH----TTCEE
T ss_pred cHHHHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHh-cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHh----CCCEE
Confidence 444444444443322 267888888888888888877 444433 3343 366666655544 36778
Q ss_pred EEecccc
Q 011060 141 LVATDVA 147 (494)
Q Consensus 141 LVaTd~~ 147 (494)
+-+|-++
T Consensus 102 ~t~tH~l 108 (201)
T 1vp8_A 102 VRQSHIL 108 (201)
T ss_dssp EECCCTT
T ss_pred EEEeccc
Confidence 7777664
No 207
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=23.88 E-value=51 Score=26.89 Aligned_cols=37 Identities=16% Similarity=0.132 Sum_probs=29.9
Q ss_pred HccCCeEEEEeCChHHHHHHHHHHHc-cC-cEEEEeCCC
Q 011060 85 YAKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDI 121 (494)
Q Consensus 85 ~~~~~~~iVF~~t~~~~~~l~~~l~~-~~-~~~~lhg~~ 121 (494)
+.++.++||||.+-..+...+..|.. ++ .+..|.|++
T Consensus 79 l~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~ 117 (137)
T 1qxn_A 79 LDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGM 117 (137)
T ss_dssp CCTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCH
T ss_pred CCCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcH
Confidence 34668999999998888888888875 67 588899986
No 208
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=23.47 E-value=1.5e+02 Score=24.71 Aligned_cols=76 Identities=14% Similarity=0.239 Sum_probs=47.8
Q ss_pred HHHHHHHHHHH-HccCCeEEEEeCChHHHHHHHHHHHcc----CcEEEEeCCCCHHHHHHHHhhccCCcEEEEEeccccc
Q 011060 74 KRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTSI----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 148 (494)
Q Consensus 74 k~~~l~~ll~~-~~~~~~~iVF~~t~~~~~~l~~~l~~~----~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaTd~~~ 148 (494)
+......|+.. +..+.+++|.|.+.+.++.|-+.|-.. |-...+.++-+ .....|+|+++-..
T Consensus 24 ~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~~~~~~------------~~~~PV~L~~~~~~ 91 (150)
T 3sxu_A 24 VEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGP------------RGGAPVEIAWPQKR 91 (150)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEETTCSS------------TTCCSEEEECTTSC
T ss_pred HHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCccCCCCC------------CCCCCEEEeCCCCC
Confidence 55556666643 456789999999999999999988642 22222323321 12457999875321
Q ss_pred ccCCCCCccEEEEeCC
Q 011060 149 RGLDIPNVDLIIHYEL 164 (494)
Q Consensus 149 ~Gidip~v~~VI~~~~ 164 (494)
.-+.-+++||.+.
T Consensus 92 ---~~~~~~vLinL~~ 104 (150)
T 3sxu_A 92 ---SSSRRDILISLRT 104 (150)
T ss_dssp ---CCSCCSEEEECCS
T ss_pred ---CCCcCCEEEECCC
Confidence 1124568999774
No 209
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=23.01 E-value=2.4e+02 Score=21.03 Aligned_cols=53 Identities=9% Similarity=0.075 Sum_probs=32.2
Q ss_pred ceEEEeecCcccccCCCChhHHHHHhhhhcCCCcCccccEEEeecCceeeEEeec-CHHHHHHHHhh
Q 011060 286 WVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDL-PEEIAKELLNK 351 (494)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~i~~~~~~~gs~fdv-p~~~a~~~~~~ 351 (494)
..+|+|..- ...++..+|..++..... |-.+.+..++ +||+. ..+.|+..++.
T Consensus 11 ~~~l~V~nl----~~~~t~~~l~~~F~~~G~-----i~~v~~~~~~----afV~f~~~~~a~~A~~~ 64 (103)
T 2dgu_A 11 VKVLFVRNL----ANTVTEEILEKAFSQFGK-----LERVKKLKDY----AFIHFDERDGAVKAMEE 64 (103)
T ss_dssp CCCEEEECC----CTTCCHHHHHHHHHHHSC-----EEEEEECSSC----EEEEESSHHHHHHHHHH
T ss_pred CCEEEEeCC----CCCCCHHHHHHHHHhcCC-----EEEEEEECCE----EEEEeCCHHHHHHHHHH
Confidence 456777532 234788999999887665 4456666665 45555 34445555554
No 210
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=21.81 E-value=58 Score=26.40 Aligned_cols=35 Identities=11% Similarity=0.198 Sum_probs=28.4
Q ss_pred cCCeEEEEeCChHHHHHHHHHHHc-cCc-EEEEeCCC
Q 011060 87 KGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDI 121 (494)
Q Consensus 87 ~~~~~iVF~~t~~~~~~l~~~l~~-~~~-~~~lhg~~ 121 (494)
++.++||||.+-..+...+..|.. ++. +..|.|++
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~ 126 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSM 126 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcH
Confidence 457899999998888888888885 664 88888886
No 211
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=21.60 E-value=4.3e+02 Score=23.51 Aligned_cols=126 Identities=8% Similarity=0.075 Sum_probs=75.5
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-c--CcEEEEeCCCCHHHHHHHHhhccCCcEEEEEec----ccccccCCCCCccEEEE
Q 011060 89 GKTIVFTQTKRDADEVSLALTS-I--IASEALHGDISQHQRERTLNGFRQGKFTVLVAT----DVAARGLDIPNVDLIIH 161 (494)
Q Consensus 89 ~~~iVF~~t~~~~~~l~~~l~~-~--~~~~~lhg~~~~~~R~~~~~~F~~g~~~iLVaT----d~~~~Gidip~v~~VI~ 161 (494)
.++++.++.....+.+.+.+.+ . ..+..+.+.+.... ..+.+.+.++..+|+||- ..+..-+++| ||.
T Consensus 13 ~~ii~i~~~~~L~~~~~~i~~e~~~~~~I~vi~~~le~av-~~a~~~~~~~~~dVIISRGgta~~Lr~~~~iP----VV~ 87 (225)
T 2pju_A 13 KPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAV-TYIRKKLANERCDAIIAAGSNGAYLKSRLSVP----VIL 87 (225)
T ss_dssp CCEEEEECCHHHHHHHHHHHTTTTTTCEEEEECCCHHHHH-HHHHHHTTTSCCSEEEEEHHHHHHHHTTCSSC----EEE
T ss_pred CCEEEEEchHHHHHHHHHHHHhhCCCceEEEecCcHHHHH-HHHHHHHhcCCCeEEEeCChHHHHHHhhCCCC----EEE
Confidence 4667777777666644444433 1 34556667764332 222333444557899984 3455556666 443
Q ss_pred eCCCCCHhHHHHHhhccCcCCCCceEEEecChhhHHHHHHHHHHhcCCccccCCCChHHHHH
Q 011060 162 YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 223 (494)
Q Consensus 162 ~~~P~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~ 223 (494)
+|.+..++++-+=++-+.+. -.+++-+. +-...++.+.+.++.++......+.+++..
T Consensus 88 --I~vs~~Dil~aL~~a~~~~~-kIavVg~~-~~~~~~~~i~~ll~~~i~~~~~~~~ee~~~ 145 (225)
T 2pju_A 88 --IKPSGYDVLQFLAKAGKLTS-SIGVVTYQ-ETIPALVAFQKTFNLRLDQRSYITEEDARG 145 (225)
T ss_dssp --ECCCHHHHHHHHHHTTCTTS-CEEEEEES-SCCHHHHHHHHHHTCCEEEEEESSHHHHHH
T ss_pred --ecCCHHHHHHHHHHHHhhCC-cEEEEeCc-hhhhHHHHHHHHhCCceEEEEeCCHHHHHH
Confidence 35677788887777766543 23444443 334557888999999998887777766543
No 212
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=21.38 E-value=84 Score=28.53 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=19.1
Q ss_pred HHHHHHHccCCeEEEEeCChHHHHHHHHHHH
Q 011060 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALT 109 (494)
Q Consensus 79 ~~ll~~~~~~~~~iVF~~t~~~~~~l~~~l~ 109 (494)
..++......+..|+|+.|+..+..+.....
T Consensus 54 ~~~i~~~~~~~~~iLfVgTk~~~~~~V~~~A 84 (231)
T 3bbn_B 54 CDLVFDASSRGKQFLIVGTKNKAADSVARAA 84 (231)
T ss_dssp HHHSHHHHTTTCCEEEECCCTTTHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEeCcHHHHHHHHHHH
Confidence 3344433345677888888887766555444
No 213
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=20.16 E-value=90 Score=28.76 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=32.2
Q ss_pred HHHHHHH--HccCCeEEEEeCChHHHHHHHHHHH-c-cC-cEEEEeCCC
Q 011060 78 LSDLITV--YAKGGKTIVFTQTKRDADEVSLALT-S-II-ASEALHGDI 121 (494)
Q Consensus 78 l~~ll~~--~~~~~~~iVF~~t~~~~~~l~~~l~-~-~~-~~~~lhg~~ 121 (494)
|...+.. +.++.++||||.+-..+...+..|. . ++ .+..|.|++
T Consensus 221 l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 269 (285)
T 1uar_A 221 LRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSW 269 (285)
T ss_dssp HHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred HHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchH
Confidence 3444443 3456789999999888888888887 4 66 588888885
Done!