Query 011061
Match_columns 494
No_of_seqs 242 out of 585
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 19:59:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011061.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011061hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x3z_A Peptide: N-glycanase; h 100.0 4E-74 1.4E-78 580.3 20.0 226 38-267 89-319 (335)
2 2f4m_A Peptide N-glycanase; gl 100.0 1.8E-66 6.3E-71 518.3 24.5 222 46-267 58-281 (295)
3 2qsf_A RAD4, DNA repair protei 100.0 7E-33 2.4E-37 295.0 10.1 240 50-326 102-387 (533)
4 3isr_A Transglutaminase-like e 99.5 2.4E-14 8.3E-19 142.4 10.5 100 48-192 142-248 (293)
5 2g9g_A Pngase, peptide N-glyca 99.4 3.2E-16 1.1E-20 151.3 -12.7 131 273-412 17-155 (221)
6 2q3z_A Transglutaminase 2; tra 99.0 4.6E-10 1.6E-14 123.0 6.4 54 125-178 273-363 (687)
7 1ex0_A Coagulation factor XIII 98.8 4E-09 1.4E-13 116.2 7.5 123 21-176 228-399 (731)
8 1vjj_A Protein-glutamine gluta 98.7 7.4E-09 2.5E-13 113.6 6.0 58 120-177 258-357 (692)
9 1g0d_A Protein-glutamine gamma 98.7 1.2E-08 4.2E-13 111.8 6.5 58 120-177 258-359 (695)
10 3kd4_A Putative protease; stru 98.5 1.7E-07 5.8E-12 98.9 7.0 91 47-177 243-346 (506)
11 2i74_A Pngase; beta-sandwich, 97.2 1.7E-06 6E-11 81.9 -10.4 101 302-411 7-114 (189)
12 4fgq_A Periplasmic protein; DU 94.7 0.04 1.4E-06 52.4 6.0 132 22-204 23-164 (193)
13 2ija_A Arylamine N-acetyltrans 70.6 9 0.00031 37.6 7.2 66 119-186 62-143 (295)
14 2bsz_A Arylamine N-acetyltrans 69.1 11 0.00039 36.8 7.5 67 119-187 62-143 (278)
15 1e2t_A NAT, N-hydroxyarylamine 68.0 10 0.00034 37.2 6.9 67 119-187 61-141 (284)
16 3d9w_A Putative acetyltransfer 62.6 6.7 0.00023 38.8 4.5 66 119-185 71-149 (293)
17 1w4t_A Arylamine N-acetyltrans 62.3 5.2 0.00018 39.7 3.7 67 119-187 82-164 (299)
18 1w5r_A Arylamine N-acetyltrans 60.2 5.5 0.00019 39.0 3.4 66 119-186 62-145 (278)
19 2vfb_A Arylamine N-acetyltrans 59.7 19 0.00063 35.2 7.0 66 119-186 59-142 (280)
20 3lnb_A N-acetyltransferase fam 58.7 9.5 0.00033 38.2 4.9 65 119-185 88-167 (309)
21 1tfi_A Transcriptional elongat 54.6 8 0.00027 29.0 2.7 41 67-112 8-49 (50)
22 1l1o_C Replication protein A 7 51.8 11 0.00037 34.5 3.7 72 52-173 29-108 (181)
23 2akl_A PHNA-like protein PA012 50.0 5.8 0.0002 35.9 1.5 29 67-110 26-54 (138)
24 1qyp_A RNA polymerase II; tran 44.3 11 0.00037 28.4 2.0 38 69-111 16-54 (57)
25 3po3_S Transcription elongatio 43.7 12 0.00043 34.6 2.8 42 66-112 135-177 (178)
26 2fiy_A Protein FDHE homolog; F 41.8 15 0.0005 36.9 3.1 16 96-111 249-264 (309)
27 1vk6_A NADH pyrophosphatase; 1 38.8 23 0.00079 34.3 3.9 47 50-117 95-141 (269)
28 1dxg_A Desulforedoxin; non-hem 36.7 8.4 0.00029 26.9 0.3 15 97-111 3-17 (36)
29 2pjk_A 178AA long hypothetical 36.1 21 0.00073 32.5 3.0 116 319-435 35-177 (178)
30 4esj_A Type-2 restriction enzy 30.3 23 0.00078 35.0 2.3 31 69-110 35-66 (257)
31 2fiy_A Protein FDHE homolog; F 29.5 22 0.00077 35.6 2.1 49 65-131 180-230 (309)
32 1x0t_A Ribonuclease P protein 29.4 17 0.00057 31.7 1.1 18 98-115 92-109 (120)
33 3rfq_A Pterin-4-alpha-carbinol 29.3 23 0.00078 32.9 2.0 71 365-436 98-183 (185)
34 4e2x_A TCAB9; kijanose, tetron 29.0 58 0.002 32.2 5.0 111 67-178 11-141 (416)
35 3j21_i 50S ribosomal protein L 28.2 31 0.0011 28.7 2.4 29 69-111 36-64 (83)
36 1vq8_Z 50S ribosomal protein L 27.8 13 0.00046 30.7 0.1 36 70-120 29-67 (83)
37 3iwt_A 178AA long hypothetical 27.5 26 0.00088 31.3 2.0 53 383-435 111-177 (178)
38 3iz5_m 60S ribosomal protein L 26.9 36 0.0012 28.9 2.6 36 70-119 38-75 (92)
39 3j20_Y 30S ribosomal protein S 26.1 22 0.00075 26.6 1.1 27 69-109 20-46 (50)
40 2k3r_A Ribonuclease P protein 25.4 20 0.00068 31.4 0.8 20 97-116 86-105 (123)
41 1pqv_S STP-alpha, transcriptio 24.9 33 0.0011 34.2 2.4 41 67-112 267-308 (309)
42 3o9x_A Uncharacterized HTH-typ 24.7 15 0.00052 30.9 -0.0 41 70-111 4-47 (133)
43 3pzy_A MOG; ssgcid, seattle st 24.7 40 0.0014 30.2 2.8 115 319-436 22-159 (164)
44 3jyw_9 60S ribosomal protein L 24.1 35 0.0012 27.8 1.9 29 69-111 27-55 (72)
45 3izc_m 60S ribosomal protein R 23.6 42 0.0014 28.5 2.4 29 69-111 37-65 (92)
46 4a17_Y RPL37A, 60S ribosomal p 21.2 38 0.0013 29.3 1.7 28 70-111 38-65 (103)
47 2aus_D NOP10, ribosome biogene 21.2 48 0.0017 26.1 2.2 27 64-90 13-39 (60)
48 3u50_C Telomerase-associated p 21.1 28 0.00095 32.2 0.9 72 52-172 27-103 (172)
No 1
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=100.00 E-value=4e-74 Score=580.33 Aligned_cols=226 Identities=40% Similarity=0.807 Sum_probs=213.1
Q ss_pred CCCCCCCCccHHHHHHHHHHHhhcc-CEeecCCCCCCCCCCc---cc-cCCCCCChhhhhcCCceEEEeeeCCCCccccc
Q 011061 38 GNFKPSKTEQDHAFLLQLLFWFKQT-FRWVNAPPCDGCSNET---VG-QGMGTPLPSEIQYGAARVELFRCKVCSKITRF 112 (494)
Q Consensus 38 g~~~p~~~e~~~~~l~~LL~wFK~~-F~wv~~P~C~~Cg~~t---~~-~g~~~p~~~E~~~ga~~VE~Y~C~~C~~~~RF 112 (494)
|..+|.+. .++++|++||+|||++ |+|||+|||+.||+++ .. +|+.+|+++|..+||++||+|+|+.||+.+||
T Consensus 89 ~~~~~~~~-~~d~ll~~LL~WFk~~fF~wvn~p~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~~C~~~~rF 167 (335)
T 1x3z_A 89 GHAEGENI-YTDYLVKELLRYFKQDFFKWCNKPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNITRF 167 (335)
T ss_dssp CSSSSCTH-HHHHHHHHHHHHHHHTTCEECSSCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCEEEE
T ss_pred CCCCCccc-hhHHHHHHHHHHHHhcCCEeeCCCCccccCCCccccccccCCCCCChhhhccCCceEEEeecCCCCccccc
Confidence 33456655 4556999999999998 8999999999999985 45 59999999999999999999999999999999
Q ss_pred CCCCCHHHHHHhCCccchhHHHHHHHHHHHcCCCEEEEEeCCCceEEEEeeCCCCCeEEeccCCCcCCCCeeeecCccCc
Q 011061 113 PRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYESRLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKK 192 (494)
Q Consensus 113 PRyn~p~~LL~tR~GrCgE~A~lF~~~~RAlGlpAR~V~~~~dHvW~EVy~~~~~rWV~vDP~e~~iD~PllYE~gWgKk 192 (494)
||||+|.+||+||+|+|+|||+||+++|||+|+|||||+|+++|+|+|||+++.++|||||||++++|+|++|+.||+|+
T Consensus 168 PRYn~~~~ll~tr~G~C~e~A~lF~~llRalGi~aR~V~~~~~H~W~EV~~~~~~rWv~vDp~~~~id~P~~ye~gw~k~ 247 (335)
T 1x3z_A 168 PRYNDPIKLLETRKGRCGEWCNLFTLILKSFGLDVRYVWNREDHVWCEYFSNFLNRWVHVDSCEQSFDQPYIYSINWNKK 247 (335)
T ss_dssp EEECCHHHHHHHCEECHHHHHHHHHHHHHTTTCCEEEEEETTTEEEEEEEETTTTEEEEEETTTTEESCTHHHHTTSCCC
T ss_pred CCcCCHHHHHHhCCcChHHHHHHHHHHHHHCCCCeEEEecCCCcEEEEEEECCCCCEEEECCCCCccCCCceeecCCCCc
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred cceEEeecCCcceechhhhccChHHhhhhcccccHHHHHHHHHHHHHHHHccCCHHHhhhhhhhcHHHHHHHhhh
Q 011061 193 LNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIATEQTVSAVLAKMTRECRRSFASETLSTLEDRDKCEREAMERD 267 (494)
Q Consensus 193 lSYVIAFs~DGv~DVTrRYt~~~~~~~~RR~rv~E~wl~~~L~~l~~~~R~~ls~ee~~~Le~Rd~~E~~EL~~~ 267 (494)
|+|||||++||++|||+||+.+ + . .+|.+|+|+||..+|..||+++|.++|++++..|++||+.|..||...
T Consensus 248 msYVIAFs~dgv~DVT~RY~~~-~-~-lrR~rv~e~wl~~~L~~l~~~~r~~~s~~e~~~L~~Rd~~E~~EL~~~ 319 (335)
T 1x3z_A 248 MSYCIAFGKDGVVDVSKRYILQ-N-E-LPRDQIKEEDLKFLCQFITKRLRYSLNDDEIYQLACRDEQEQIELIRG 319 (335)
T ss_dssp BCCEEEEETTEEEECHHHHCSS-S-B-CCCCSSCHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEEEcCCCCEECHHHhCcC-C-c-cccccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHhhcc
Confidence 9999999999999999999999 4 4 388899999999999999999999999999999999999999999855
No 2
>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A*
Probab=100.00 E-value=1.8e-66 Score=518.28 Aligned_cols=222 Identities=46% Similarity=0.869 Sum_probs=214.4
Q ss_pred ccHHHHHHHHHHHhhcc-CEeecCCCCCCCCCCccccCC-CCCChhhhhcCCceEEEeeeCCCCcccccCCCCCHHHHHH
Q 011061 46 EQDHAFLLQLLFWFKQT-FRWVNAPPCDGCSNETVGQGM-GTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVE 123 (494)
Q Consensus 46 e~~~~~l~~LL~wFK~~-F~wv~~P~C~~Cg~~t~~~g~-~~p~~~E~~~ga~~VE~Y~C~~C~~~~RFPRyn~p~~LL~ 123 (494)
++++++|++||+|||++ |+|||+|||+.||++|...|+ ++|+++|..+||++||.|+|..|+..+||||||+|.++|+
T Consensus 58 ~~~~~~~~~ll~wFk~~fF~~~~~P~c~~C~~~~~~~g~~~~~~~~e~~~~a~~vE~y~c~~c~~~~~~pr~~~~~~~l~ 137 (295)
T 2f4m_A 58 SDEDFLLLELLHWFKEEFFRWVNNIVCSKCGGETRSRDEALLPNDDELKWGAKNVENHYCDACQLSNRFPRYNNPEKLLE 137 (295)
T ss_dssp CSHHHHHHHHHHHHHHTTCEECSSCCCTTTCCCCEECSSCBCCCSHHHHTTCCCEEEEEETTTTEEEEEECCCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCCEEeCCCCCcccCCcccccCCCCCCChhHhhcccchhheeeccccCceeecCCCCCHHHHHH
Confidence 34677999999999997 899999999999999998887 8999999999999999999999999999999999999999
Q ss_pred hCCccchhHHHHHHHHHHHcCCCEEEEEeCCCceEEEEeeCCCCCeEEeccCCCcCCCCeeeecCccCccceEEeecCCc
Q 011061 124 TKRGRCGEWANCFTLYCRAFGYESRLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDG 203 (494)
Q Consensus 124 tR~GrCgE~A~lF~~~~RAlGlpAR~V~~~~dHvW~EVy~~~~~rWV~vDP~e~~iD~PllYE~gWgKklSYVIAFs~DG 203 (494)
+|+|+|+|||++|+++||++|||||||.+..+|+|+|||+++..+||+||||++++|.|++|+.||+++|+|||||+.||
T Consensus 138 ~r~G~C~d~A~lf~al~Ra~GIpAR~V~Gy~~HaW~Evy~~g~~gWv~~Dpt~~~~~~p~~~e~gwgr~lsYViAf~~D~ 217 (295)
T 2f4m_A 138 TRCGRCGEWANCFTLCCRALGFEARYVWDYTDHVWTEVYSPSQQRWLHCDACEDVCDKPLLYEIGWGKKLSYIIAFSKDE 217 (295)
T ss_dssp HCEESHHHHHHHHHHHHHHTTCCEEEEEETTTEEEEEEEETTTTEEEEEETTTTEESCGGGTTTTSCCCCCCEEEECSSC
T ss_pred cCCEeeHHHHHHHHHHHHHCCCCEEEEcCCCCEEEEEEEECCCCeEEEEeCCcCccCCCceEeeccCCCceEEEEECCcc
Confidence 99999999999999999999999999999999999999999877999999999999999999999999999999999999
Q ss_pred ceechhhhccChHHhhhhcccccHHHHHHHHHHHHHHHHccCCHHHhhhhhhhcHHHHHHHhhh
Q 011061 204 VFDVTKRYTRKWHEVLSRRNIATEQTVSAVLAKMTRECRRSFASETLSTLEDRDKCEREAMERD 267 (494)
Q Consensus 204 v~DVTrRYt~~~~~~~~RR~rv~E~wl~~~L~~l~~~~R~~ls~ee~~~Le~Rd~~E~~EL~~~ 267 (494)
++|||+||+.+|+.+.++|.+++|+||.++|..||.++|.++|++++++|++||+.|..||...
T Consensus 218 a~DVT~RY~~~~~~~~~rR~~v~e~wl~~~l~~l~~~~r~~~s~~e~~~l~~Rd~~E~~el~~~ 281 (295)
T 2f4m_A 218 VVDVTWRYSCKHDEVMSRRTKVKEELLRETINGLNKQRQLSLSESRRKELLQRIIVELVEFISP 281 (295)
T ss_dssp EEECGGGGCSCHHHHHHHCCSSCHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CccchhhcccchHHHHhhccCCCHHHHHHHHHHHHHHHHccCCHHHHHHHHHhHHHHHHHhcCc
Confidence 9999999999999888899999999999999999999999999999999999999999999754
No 3
>2qsf_A RAD4, DNA repair protein RAD4; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_A* 2qsh_A*
Probab=99.97 E-value=7e-33 Score=295.03 Aligned_cols=240 Identities=17% Similarity=0.171 Sum_probs=162.0
Q ss_pred HHHHHHHHHhhccCEeecCCCCCCCCCCccccCCCCCChhhhhcCCceEEEeeeCCCCcccccCCCCCHHHHHHhCCccc
Q 011061 50 AFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRC 129 (494)
Q Consensus 50 ~~l~~LL~wFK~~F~wv~~P~C~~Cg~~t~~~g~~~p~~~E~~~ga~~VE~Y~C~~C~~~~RFPRyn~p~~LL~tR~GrC 129 (494)
..|+.|+.|||+.|+ ++.| ...||.-. +.-.|.... .++.| ..++..++++.+++++++|+|
T Consensus 102 ~~Lk~L~~ww~~~F~-it~p-~~~~g~~~-------~~w~e~~~~-------~~~~~--~f~~~~~~~f~~~~~~~~Gs~ 163 (533)
T 2qsf_A 102 DGLKKCMELWQKHWK-ITKK-YDNEGLYM-------RTWKEIEMS-------ANNKR--KFKTLKRSDFLRAVSKGHGDP 163 (533)
T ss_dssp HHHHHHHHHHHHHCC-EECC-CSSCTTSC-------CCHHHHHHT-------TTTCC--CEECCCHHHHHHHHHHTEECH
T ss_pred HHHHHHHHHHHhhEE-EcCC-ccCCCccc-------cCccccchh-------hcccc--ccccccHHHHHHHHHhcCCCh
Confidence 358999999999885 3444 23444321 221222111 11111 113344688999999999999
Q ss_pred hhHHHHHHHHHHHcCCCEEEEEeC-------------------------CCceEEEEeeCCCCCeEEeccCCC-cC---C
Q 011061 130 GEWANCFTLYCRAFGYESRLILDF-------------------------TDHVWTECFSQSLGRWMHLDPCEG-IY---D 180 (494)
Q Consensus 130 gE~A~lF~~~~RAlGlpAR~V~~~-------------------------~dHvW~EVy~~~~~rWV~vDP~e~-~i---D 180 (494)
++||+||+++|||+|++||+|++. .+|+|+|||++.+++|||||||++ ++ +
T Consensus 164 d~~AqlF~aLlRalG~~aRlV~SLqP~~f~~~k~~~~~~k~~~~~~~~~~P~~W~EV~s~~~~rWi~VDp~~~~~id~~~ 243 (533)
T 2qsf_A 164 DISVQGFVAMLRACNVNARLIMSCQPPDFTNMKIDTSLNGNNAYKDMVKYPIFWCEVWDKFSKKWITVDPVNLKTIEQVR 243 (533)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECCCCTTCCBSCCCCC---CHHHHTTSCSEEEEEEETTTTEEEEEESSSSCEEECCS
T ss_pred hHHHHHHHHHHHHCCCceEEEeccccccccccccccCcccCCccccccCCCeEEEEEEEcCCCeEEEEeccccccccccc
Confidence 999999999999999999999752 379999999999999999999985 44 5
Q ss_pred CCeeeec-----CccCccceEEeecCC-cceechhhhccChHHhhhhcccc-----cHHHHHHHHHHHHHHHHccCCHHH
Q 011061 181 RPLLYEK-----GWNKKLNYVIAISKD-GVFDVTKRYTRKWHEVLSRRNIA-----TEQTVSAVLAKMTRECRRSFASET 249 (494)
Q Consensus 181 ~PllYE~-----gWgKklSYVIAFs~D-Gv~DVTrRYt~~~~~~~~RR~rv-----~E~wl~~~L~~l~~~~R~~ls~ee 249 (494)
.|.+||. +|+++|+|||||+.| +++|||+||+.+|+.. .+|.|+ +++||..+|+.++++.+
T Consensus 244 ~~~~~Ep~~~~~~~~~~m~YViAf~~d~~~kDVT~RY~~~~~~k-~rr~Ri~~~~~~~~W~~~~L~~~~~~~~------- 315 (533)
T 2qsf_A 244 LHSKLAPKGVACCERNMLRYVIAYDRKYGCRDVTRRYAQWMNSK-VRKRRITKDDFGEKWFRKVITALHHRKR------- 315 (533)
T ss_dssp SCCTTSCCSTTTTSSCCCCEEEEECTTCCEEECHHHHCTTCCCC-CGGGSGGGSHHHHHHHHHHHHHHCCSCC-------
T ss_pred cccccccccccccccCceeEEEEEcCCCceEecchhhhhchhhh-hheeeecCCcchHHHHHHHHHHHhcCCc-------
Confidence 7788885 499999999999987 6899999999999755 456565 48999999998885211
Q ss_pred hhhhhhhcHHHHHHHhhhhcCCC-CCC-CCCCCCccccHHHHHhhcCCCCCCCCCcCCCCCCceeccc----cceeeEee
Q 011061 250 LSTLEDRDKCEREAMERDLYSTD-DAP-VSLPGRQSGDKEWRISRSEIGSDDNCSLSCSSCPVRVCID----EHVTTIYN 323 (494)
Q Consensus 250 ~~~Le~Rd~~E~~EL~~~~~~~~-~~~-~~l~GRqSGS~eWr~aRGE~G~~~~~s~~~s~cp~r~c~d----ehv~~iY~ 323 (494)
..+|..|+.||......+. +++ +++. .++.+-. |.--..+..+-|...|++.|.. ..+..||.
T Consensus 316 ----~~~d~~Ed~el~~~~~~e~~P~s~~~fK----~HP~yvL---er~L~k~E~i~P~a~~~g~~~~~~k~~~~E~VY~ 384 (533)
T 2qsf_A 316 ----TKIDDYEDQYFFQRDESEGIPDSVQDLK----NHPYYVL---EQDIKQTQIVKPGCKECGYLKVHGKVGKVLKVYA 384 (533)
T ss_dssp ----CHHHHHHHHHHHHHHHHSCCCSSTGGGT----TCSSEEE---GGGSCTTEEECTTCCCSEEEECCSTTCCEEEEEE
T ss_pred ----cccchhHHHHHHHHHhcCCCCccHHHHc----CCcHhhh---hhhhccceeeCCCCceeeEEecCcCCCcccceee
Confidence 3456677777754432221 111 1110 0111111 1111334456666678887753 23458898
Q ss_pred cch
Q 011061 324 AFS 326 (494)
Q Consensus 324 a~~ 326 (494)
...
T Consensus 385 R~~ 387 (533)
T 2qsf_A 385 KRD 387 (533)
T ss_dssp GGG
T ss_pred hhh
Confidence 766
No 4
>3isr_A Transglutaminase-like enzymes, putative cysteine; protease, hutchinsoni MCSG, structural genomics; 1.90A {Cytophaga hutchinsonii}
Probab=99.52 E-value=2.4e-14 Score=142.37 Aligned_cols=100 Identities=14% Similarity=0.263 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHhhccCEeecCCCCCCCCCCccccCCCCCChhhhhcCCceEEEeeeCCCCcccccCCCCCHHHHHHhCCc
Q 011061 48 DHAFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRG 127 (494)
Q Consensus 48 ~~~~l~~LL~wFK~~F~wv~~P~C~~Cg~~t~~~g~~~p~~~E~~~ga~~VE~Y~C~~C~~~~RFPRyn~p~~LL~tR~G 127 (494)
+...+++|.+|..+.|+|.....= . -.++.++|++|+|
T Consensus 142 ~~~~~~ai~~~v~~~~~Y~~~~~~---------~---------------------------------~~~a~~~l~~~~G 179 (293)
T 3isr_A 142 VYSKVLAITDWIYNNVEYISGSTN---------S---------------------------------QTSAFDTITERAG 179 (293)
T ss_dssp HHHHHHHHHHHHHHHSEECTTSCC---------T---------------------------------TCCHHHHHHHCEE
T ss_pred HHHHHHHHHHHHHhhcEEeccCCC---------C---------------------------------CCCHHHhhcCCcE
Confidence 456889999999998998543210 0 0246788999999
Q ss_pred cchhHHHHHHHHHHHcCCCEEEEEe-------CCCceEEEEeeCCCCCeEEeccCCCcCCCCeeeecCccCc
Q 011061 128 RCGEWANCFTLYCRAFGYESRLILD-------FTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKK 192 (494)
Q Consensus 128 rCgE~A~lF~~~~RAlGlpAR~V~~-------~~dHvW~EVy~~~~~rWV~vDP~e~~iD~PllYE~gWgKk 192 (494)
.|.++|++|+++||++|||||||.. ...|+|+|||+++ +|+.+||+.+..+. ..+..++|+.
T Consensus 180 ~C~d~A~l~val~Ra~GIPAR~VsGy~~~~~~~~~HAW~Evyl~g--gWv~~DpT~~~~~~-~~I~vA~GRD 248 (293)
T 3isr_A 180 VCRDFAHLGIALCRALSIPARYFTGYAFKLNPPDFHACFEAYIGG--NWIIFDATRLVPLN-GLVKIATGRD 248 (293)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEEEETTCSSCCEEEEEEEEETT--EEEEECTTCCSCGG-GEEEEEEESS
T ss_pred ehHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCeEEEEEEEECC--cEEEEECCCCCCCC-CeEEEEECCC
Confidence 9999999999999999999999953 3569999999996 79999999876443 3344456553
No 5
>2g9g_A Pngase, peptide N-glycanase; beta-sandwich, hydrolase; 2.00A {Mus musculus} SCOP: b.18.1.29
Probab=99.40 E-value=3.2e-16 Score=151.25 Aligned_cols=131 Identities=21% Similarity=0.241 Sum_probs=89.7
Q ss_pred CCCCCCCCCccccHHHHHhhcCCCCCC-CCCcCCCCCCceeccccceeeEeecch---hhhhccccCC-CchhhHHHHHH
Q 011061 273 DAPVSLPGRQSGDKEWRISRSEIGSDD-NCSLSCSSCPVRVCIDEHVTTIYNAFS---SVLSHFVENN-VPKSGAIELLK 347 (494)
Q Consensus 273 ~~~~~l~GRqSGS~eWr~aRGE~G~~~-~~s~~~s~cp~r~c~dehv~~iY~a~~---~~ls~~~~~~-~~~~~a~~~~~ 347 (494)
+++.++.||+|||++||.||||+|... ..++.|+.. ...+.+|+..||.+. .+.++..+.- .|.+++..+..
T Consensus 17 ~~~~e~~GRtSGSl~WR~aRGE~g~~~~~~v~~p~e~---e~~~~~f~f~Y~~~~D~Ysr~~~n~~~i~gW~s~~~~~~n 93 (221)
T 2g9g_A 17 RGSHELGGRVSGSLAWRVARGETGLERKEILFIPSEN---EKISKQFHLRYDIVRDRYIRVSDNNTNISGWENGVWKMES 93 (221)
T ss_dssp -------CEECSSEEEC---------CCCCEECCCHH---HHHHTEEEEEEETTTTEEEEGGGTTEEEESGGGGCSSEES
T ss_pred CCccccCCcccccHHHHHHhhccccCcCceeeccchh---hhhCCEEEEEEeccCcEEEEecCCCccccchhhccccccc
Confidence 457889999999999999999998743 235667776 777889999999998 5555544433 69999999999
Q ss_pred HHHHHHhhccCCCcccccccccCCCCchhHHHHhh-hccHHHHHHhhccc--cccCCCCCeEEEecCC
Q 011061 348 ILKGILGDLKKSPYKTRRVSLNSVPNNGQKIVHQL-LPSIGHLLRVLSLK--SELNTDGRVDIVLAGD 412 (494)
Q Consensus 348 ~~r~~~~dlk~~~fk~R~~~~~~~~~~~~~~~~~~-lps~~~ll~~lslk--~~~~~~g~~~~~~~~~ 412 (494)
||||++.||||+ |++|++.-+....+ |+| |++.+-.+.-|.++ .....+|+|.+++-++
T Consensus 94 IfRkvE~DWkmv-YLaR~Egt~~g~Is-----WkFdl~~~gl~V~ki~I~~~sq~f~~G~v~~~i~~~ 155 (221)
T 2g9g_A 94 IFRKVEKDWNMV-YLARKEGSSFAYIS-----WKFECGSAGLKVDTVSIRTSSQSFESGSVRWKLRSE 155 (221)
T ss_dssp EEEEEETTTTEE-EEEECTTCSEEEEE-----EEEECTTTTEEEEEEEEEEEEEECTTCEEEEEEECS
T ss_pred eEEEEeCCCceE-EEEEeCCCCEEEEE-----EEEecCCCCcEEEEEEEEEeeEEecCCEEEEEEeCC
Confidence 999999999999 99998866554433 778 88766666666666 3445799998877764
No 6
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=98.96 E-value=4.6e-10 Score=123.04 Aligned_cols=54 Identities=26% Similarity=0.546 Sum_probs=46.4
Q ss_pred CCccchhHHHHHHHHHHHcCCCEEEE--Ee-----------------------------CCCceEEEEeeC------CCC
Q 011061 125 KRGRCGEWANCFTLYCRAFGYESRLI--LD-----------------------------FTDHVWTECFSQ------SLG 167 (494)
Q Consensus 125 R~GrCgE~A~lF~~~~RAlGlpAR~V--~~-----------------------------~~dHvW~EVy~~------~~~ 167 (494)
|.|.|.+||++|+++||++||||||| |. +..|+|+|||.+ +..
T Consensus 273 k~G~C~dfA~~~~~llRalGIPAR~VsGy~~~~~~~~~l~~d~~~~~~g~~~~~~~d~~~~~HAW~Ev~~~rpDLp~g~~ 352 (687)
T 2q3z_A 273 KYGQCWVFAAVACTVLRCLGIPTRVVTNYNSAHDQNSNLLIEYFRNEFGEIQGDKSEMIWNFHCWVESWMTRPDLQPGYE 352 (687)
T ss_dssp EEECHHHHHHHHHHHHHHHTCCEEEEEEEEEECC--CCHHHHHHHC---------CCCCBSEEEEEEEEECCTTSSTTCC
T ss_pred ceeehHHHHHHHHHHHHhCCCCcEEEeecccccccccccccccccCCCCceeeecCCcccceeEEEEEEcccCCCCCCCC
Confidence 36999999999999999999999999 31 126999999998 545
Q ss_pred CeEEeccCCCc
Q 011061 168 RWMHLDPCEGI 178 (494)
Q Consensus 168 rWV~vDP~e~~ 178 (494)
+|+.+||+.+.
T Consensus 353 GW~~~DpT~~~ 363 (687)
T 2q3z_A 353 GWQALDPTPQE 363 (687)
T ss_dssp EEEEECCSSCC
T ss_pred CEEEECCCCCc
Confidence 89999999754
No 7
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=98.81 E-value=4e-09 Score=116.17 Aligned_cols=123 Identities=19% Similarity=0.285 Sum_probs=78.9
Q ss_pred ccccccccchhhHHhhcCCCCCCCCccHHHHHHHHHHHhhcc----C---EeecCCCCCCCCCCccccCCCCCChhhhhc
Q 011061 21 GQFEETVHPYISKVLMEGNFKPSKTEQDHAFLLQLLFWFKQT----F---RWVNAPPCDGCSNETVGQGMGTPLPSEIQY 93 (494)
Q Consensus 21 ~~~~~~~~~~~~~vl~~g~~~p~~~e~~~~~l~~LL~wFK~~----F---~wv~~P~C~~Cg~~t~~~g~~~p~~~E~~~ 93 (494)
|||++.|=+--=.+|..++..++...++..+.+.|..|.... . .|...- .+..+|+.- .
T Consensus 228 GQFE~~ILd~cl~lLd~~~~~~~~r~dpv~v~r~lsa~vn~~dD~GVL~GnW~~~y-----------~~g~~P~~~---~ 293 (731)
T 1ex0_A 228 GQFEDGILDTCLYVMDRAQMDLSGRGNPIKVSRVGSAMVNAKDDEGVLVGSFDNIY-----------AYGVPPSAW---T 293 (731)
T ss_dssp CTTSTTHHHHHHHHHHHTTCCGGGTTCHHHHHHHHHHHHBCSTTCSSEEECCSSCC-----------TTSCCGGGC---C
T ss_pred cccccchHHHHHHHhhhcCCCcccCCCHHHHHHHHHHHhhcCCcCceeeccccccc-----------CCCcCCccc---C
Confidence 367766555545555565556666656777888888877531 0 332211 111111110 0
Q ss_pred CCceEEEeeeCCCCcccccCCCCCHHHHHHhCC----ccchhHHHHHHHHHHHcCCCEEEE--EeC--------------
Q 011061 94 GAARVELFRCKVCSKITRFPRYNDPLKLVETKR----GRCGEWANCFTLYCRAFGYESRLI--LDF-------------- 153 (494)
Q Consensus 94 ga~~VE~Y~C~~C~~~~RFPRyn~p~~LL~tR~----GrCgE~A~lF~~~~RAlGlpAR~V--~~~-------------- 153 (494)
|...+- .+.+.+|+ |.|.+||++|+.+||++|||||+| |..
T Consensus 294 gs~~il-------------------~~~~~~~~PV~~G~C~~fA~v~~~~lR~lGIPaRvVtgy~sa~d~~~~l~v~~~~ 354 (731)
T 1ex0_A 294 GSVDIL-------------------LEYRSSENPVRYGQCWVFAGVFNTFLRCLGIPARIVTNYFSAHDNDANLQMDIFL 354 (731)
T ss_dssp BSHHHH-------------------HHHHHHTSCEEEECHHHHHHHHHHHHHHHTCCEEEEEEEEECCSCTTBCEEEEEE
T ss_pred ChHHHH-------------------HHHHhcCCccceeeehhHHHHHHHHHHhCCCCeeEEcccccCCCCCCcceeeEEe
Confidence 011111 44556888 999999999999999999999999 310
Q ss_pred ----------------CCceEEEEeeC------CCCCeEEeccCC
Q 011061 154 ----------------TDHVWTECFSQ------SLGRWMHLDPCE 176 (494)
Q Consensus 154 ----------------~dHvW~EVy~~------~~~rWV~vDP~e 176 (494)
..|+|+|+|.. +.++|+.+||+.
T Consensus 355 ~~~g~~~~~~~~dsIW~~H~W~E~w~~rpDLp~g~~GWq~~DpTp 399 (731)
T 1ex0_A 355 EEDGNVNSKLTKDSVWNYHCWNEAWMTRPDLPVGFGGWQAVDSTP 399 (731)
T ss_dssp CTTSCBCTTTCCCCCEEEEEEEEEEECCTTSCTTCCEEEEEEEEE
T ss_pred cccCccccccccCccceeeEEEEEeccccCCCCCCCCeEEEcCCC
Confidence 24999999995 345899999995
No 8
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=98.73 E-value=7.4e-09 Score=113.58 Aligned_cols=58 Identities=29% Similarity=0.528 Sum_probs=48.0
Q ss_pred HHHHhC-C----ccchhHHHHHHHHHHHcCCCEEEE--Ee----C-------------------------CCceEEEEee
Q 011061 120 KLVETK-R----GRCGEWANCFTLYCRAFGYESRLI--LD----F-------------------------TDHVWTECFS 163 (494)
Q Consensus 120 ~LL~tR-~----GrCgE~A~lF~~~~RAlGlpAR~V--~~----~-------------------------~dHvW~EVy~ 163 (494)
+.+.+| + |.|.+||++|+++||++|||||+| |. . ..|+|+|+|.
T Consensus 258 ~~~~~~~~PV~~G~C~~fA~~~~~~lR~lGIPaR~Vtgy~s~~d~~~nL~~d~~~~~~g~~~~~~~dsIW~~HaW~E~w~ 337 (692)
T 1vjj_A 258 NWKKSGLSPVRYGQCWVFAGTLNTALRSLGIPSRVITNFNSAHDTDRNLSVDVYYDPMGNPLDKGSDSVWNFHVWNEGWF 337 (692)
T ss_dssp HHHHTTSCCEEEECHHHHHHHHHHHHHHHTCCEEEEEEEEEEECSSSSSEEEEEECTTSCBCCCCSCEEEEEEEEEEEEE
T ss_pred HHHHcCCCcccceeeHHHHHHHHHHHHhCCCCeeEEcccccccCCCCCcccceeeccCCcccccccccccceeEEEEEec
Confidence 566666 3 999999999999999999999999 31 0 2699999999
Q ss_pred C------CCCCeEEeccCCC
Q 011061 164 Q------SLGRWMHLDPCEG 177 (494)
Q Consensus 164 ~------~~~rWV~vDP~e~ 177 (494)
. +.++|+.+||+.+
T Consensus 338 ~rpDLp~~~~gW~~~DpT~~ 357 (692)
T 1vjj_A 338 VRSDLGPSYGGWQVLDATPQ 357 (692)
T ss_dssp CCTTTCGGGCEEEEECCSCS
T ss_pred cccCCCCCCCCEEEECCCCC
Confidence 5 2358999999964
No 9
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=98.69 E-value=1.2e-08 Score=111.79 Aligned_cols=58 Identities=26% Similarity=0.470 Sum_probs=47.8
Q ss_pred HHHHhC-C----ccchhHHHHHHHHHHHcCCCEEEE--EeC-------------------------------CCceEEEE
Q 011061 120 KLVETK-R----GRCGEWANCFTLYCRAFGYESRLI--LDF-------------------------------TDHVWTEC 161 (494)
Q Consensus 120 ~LL~tR-~----GrCgE~A~lF~~~~RAlGlpAR~V--~~~-------------------------------~dHvW~EV 161 (494)
+.+.+| + |.|.+||++|+++||++|||||+| |.. ..|+|+|+
T Consensus 258 ~~~~~~~~PV~~G~C~~fA~v~~t~lR~lGIPaR~Vtgy~sa~d~~~nL~id~~~~~~g~~~~~~~~~dsiw~~HaW~E~ 337 (695)
T 1g0d_A 258 QWSKAGVRPVKYGQCWVFAAVACTVLRCLGIPTRPITNFASAHDVDGNLSVDFLLNERLESLDSRQRSDSSWNFHCWVES 337 (695)
T ss_dssp HHHHTTSCCEEEECHHHHHHHHHHHHHHHTCCEEEEEEEEETTTTTTCSEEEEEECTTSCBSCTTCCBCSSEEEEEEEEE
T ss_pred HHHHcCCCcccceeeHHHHHHHHHHHHhCCCCeeEEccccccCCCCCccceeeeecccCceecccccCCcceeeEEEEEe
Confidence 446777 5 999999999999999999999999 310 24999999
Q ss_pred eeC------CCCCeEEeccCCC
Q 011061 162 FSQ------SLGRWMHLDPCEG 177 (494)
Q Consensus 162 y~~------~~~rWV~vDP~e~ 177 (494)
|.. +.++|+.+||+..
T Consensus 338 w~~rpDLp~~~~gWq~~DpTpq 359 (695)
T 1g0d_A 338 WMSREDLPEGNDGWQVLDPTPQ 359 (695)
T ss_dssp EECCTTSCTTCCEEEEEECSCC
T ss_pred ecccCCCCCCCCCeEEEcCCCc
Confidence 985 3458999999963
No 10
>3kd4_A Putative protease; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503}
Probab=98.46 E-value=1.7e-07 Score=98.91 Aligned_cols=91 Identities=11% Similarity=0.035 Sum_probs=71.1
Q ss_pred cHHHHHHHHHHHhhccCEeecCCCCCCCCCCccccCCCCCChhhhhcCCceEEEeeeCCCCcccccCCCCCHHHHHHhCC
Q 011061 47 QDHAFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKR 126 (494)
Q Consensus 47 ~~~~~l~~LL~wFK~~F~wv~~P~C~~Cg~~t~~~g~~~p~~~E~~~ga~~VE~Y~C~~C~~~~RFPRyn~p~~LL~tR~ 126 (494)
.+...++++.+|-++.++|.... .|.+. + ...+|.++|++|.
T Consensus 243 ~~~ek~~~iy~~V~~~i~y~~~~-----------~~~~g--------------------------~-~~~~a~~vl~~~~ 284 (506)
T 3kd4_A 243 NEQEKVNIIRDHILNNLSTCPIP-----------MAMTG--------------------------Y-TVRDIDTVLRSAY 284 (506)
T ss_dssp SHHHHHHHHHHHHHHHCEECCCC-----------GGGGT--------------------------T-CCCCHHHHHHHTE
T ss_pred CHHHHHHHHHHHHHhccEeccee-----------cccCC--------------------------C-CCCCHHHHHHhCC
Confidence 34567899999999889996321 11100 0 1235789999999
Q ss_pred ccchhHHHHHHHHHHHcCCCEEEEEe-------------CCCceEEEEeeCCCCCeEEeccCCC
Q 011061 127 GRCGEWANCFTLYCRAFGYESRLILD-------------FTDHVWTECFSQSLGRWMHLDPCEG 177 (494)
Q Consensus 127 GrCgE~A~lF~~~~RAlGlpAR~V~~-------------~~dHvW~EVy~~~~~rWV~vDP~e~ 177 (494)
|.|.+.|+||++||||+|||||+|+- .-+|+|++|+.++ +|.-+||+..
T Consensus 285 G~C~d~a~Ll~AllRa~GIpA~~v~~~t~~~~~~~~~lp~~nh~i~~v~~~g--~~y~lDat~~ 346 (506)
T 3kd4_A 285 GTPLEIAQLLNVMLNAAGIPSEVLAVYPGHLDTDACGLAAIQTLAVKATVDG--KDQYLSASPL 346 (506)
T ss_dssp ECHHHHHHHHHHHHHHTTCCEEEEEEEETTSCGGGCCSTTCCEEEEEEEETT--EEEEESSSCH
T ss_pred cchHHHHHHHHHHHHHCCCCcEEEEEEcCCCCCccCCCCCCCEEEEEEEECC--EEEEEecCCc
Confidence 99999999999999999999999951 1289999999974 6999999843
No 11
>2i74_A Pngase; beta-sandwich, hydrolase; HET: MAN; 1.75A {Mus musculus} SCOP: b.18.1.29 PDB: 2g9f_A
Probab=97.16 E-value=1.7e-06 Score=81.92 Aligned_cols=101 Identities=17% Similarity=0.118 Sum_probs=76.8
Q ss_pred CcCCCCCCceeccccceeeEeecch---hhhhccccCC-CchhhHHHHHHHHHHHHhhccCCCcccccccccCCCCchhH
Q 011061 302 SLSCSSCPVRVCIDEHVTTIYNAFS---SVLSHFVENN-VPKSGAIELLKILKGILGDLKKSPYKTRRVSLNSVPNNGQK 377 (494)
Q Consensus 302 s~~~s~cp~r~c~dehv~~iY~a~~---~~ls~~~~~~-~~~~~a~~~~~~~r~~~~dlk~~~fk~R~~~~~~~~~~~~~ 377 (494)
++.|+.. ...+.+++..||.+. .+.++..+.- .|.++++.+..||||++.||||+ |++|++..+....+
T Consensus 7 v~~p~e~---e~~~~~~~f~Y~~~~D~Y~r~~~n~~~i~gW~s~~~~~~nIfRkvE~Dwkmv-YLaR~Egt~~g~Is--- 79 (189)
T 2i74_A 7 LFIPSEN---EKISKQFHLRYDIVRDRYIRVSDNNTNISGWENGVWKMESIFRKVEKDWNMV-YLARKEGSSFAYIS--- 79 (189)
T ss_dssp CBCCCHH---HHHHTEEEEEEETTTTEEEETTTTTEEEESGGGGCSSEESEEEEEETTTTEE-EEEECTTCSEEEEE---
T ss_pred EEecchh---hhhCCEEEEEEEccCcEEEEecCCCccccchhhccccccceEEEEeCCCceE-EEEEcCCCCEEEEE---
Confidence 5777777 778889999999998 5555543333 69999999999999999999999 99998866554433
Q ss_pred HHHhh-hccHHHHHHhhccc--cccCCCCCeEEEecC
Q 011061 378 IVHQL-LPSIGHLLRVLSLK--SELNTDGRVDIVLAG 411 (494)
Q Consensus 378 ~~~~~-lps~~~ll~~lslk--~~~~~~g~~~~~~~~ 411 (494)
|+| |++.+-.+.-|.++ .....+|+|.+.+..
T Consensus 80 --WkFdl~~~gl~v~~i~i~~~sq~f~~G~v~~~~~~ 114 (189)
T 2i74_A 80 --WKFECGSAGLKVDTVSIRTSSQSFESGSVRWKLRS 114 (189)
T ss_dssp --EEEECGGGTEEEEEEEEECBEEECTTCEEEEEEEC
T ss_pred --EEEecCCCCcEEEEEEEEEeEEEecCCEEEEEEec
Confidence 778 88765556655553 455689999665554
No 12
>4fgq_A Periplasmic protein; DUF920, protease, calcium binding, hydrolase; 1.65A {Legionella pneumophila subsp} PDB: 4fgo_A 4fgp_A
Probab=94.74 E-value=0.04 Score=52.45 Aligned_cols=132 Identities=14% Similarity=0.207 Sum_probs=88.1
Q ss_pred cccccccchhhHHhhcCCCCCCCCccHHHHHHHHHHHhhccCEeecCCCCCCCCCCccccCCCCCChhhhhcCCceEEEe
Q 011061 22 QFEETVHPYISKVLMEGNFKPSKTEQDHAFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELF 101 (494)
Q Consensus 22 ~~~~~~~~~~~~vl~~g~~~p~~~e~~~~~l~~LL~wFK~~F~wv~~P~C~~Cg~~t~~~g~~~p~~~E~~~ga~~VE~Y 101 (494)
....++..+..-+-.-. +......|..+=++|+ .+.|+....= -|.. |
T Consensus 23 ~a~~r~~~w~~l~~~~~------~~~~~~~L~~VN~~vN-~i~~~~D~~~---------~G~~--------------D-- 70 (193)
T 4fgq_A 23 DTRKRFTAWGNLIDSLK------KKPVKIQLEKVNSFFN-QFNYETDPIT---------GASD--------------D-- 70 (193)
T ss_dssp HHHHHHHHHHHHHHHHT------TSCHHHHHHHHHHHHH-TSEECCCTTT---------SSCC--------------S--
T ss_pred HHHHHHHHHHHHHHHhh------CccHHHHHHHHHHHHH-hcccccchhh---------cCCC--------------C--
Confidence 35556665555433211 1234457778888888 8888876532 2210 0
Q ss_pred eeCCCCcccccCCCCCHHHHHHhCCccchhHHHHHHHHHHHcCCCE---EEEE--e---CCCceEEEEeeCCCCCeEEec
Q 011061 102 RCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYES---RLIL--D---FTDHVWTECFSQSLGRWMHLD 173 (494)
Q Consensus 102 ~C~~C~~~~RFPRyn~p~~LL~tR~GrCgE~A~lF~~~~RAlGlpA---R~V~--~---~~dHvW~EVy~~~~~rWV~vD 173 (494)
....|.+.|..+.|.|.|||.+=-..++++|+|+ |+++ + ...|++.=||.....+|+-+|
T Consensus 71 ------------yWatP~E~l~~g~GDCEDyaI~K~~~L~~~G~p~~~Lri~vVr~~~~~~~HaVL~v~~~~~~~~lVLD 138 (193)
T 4fgq_A 71 ------------YWKSPVEFIVDGGGDCEDFAIIKYFTLVAVGVPSDQLRITYAASLTLNQAHMVLSFYPTPESEPLILD 138 (193)
T ss_dssp ------------SCCCHHHHHHHTEECHHHHHHHHHHHHHHHTCCGGGEEEEEEEETTTTEEEEEEEECSSTTSCCEEEC
T ss_pred ------------cCCCcHhHhCCCCcCcHHHHHHHHHHHHHcCCCHHHeEEEEEEecCCCCCCEEEEEEECCCCCceEee
Confidence 2346888999999999999999999999999996 6664 3 357999999987556899999
Q ss_pred cCCCcCCCCeeeecCccCc--cceEEeecCCcc
Q 011061 174 PCEGIYDRPLLYEKGWNKK--LNYVIAISKDGV 204 (494)
Q Consensus 174 P~e~~iD~PllYE~gWgKk--lSYVIAFs~DGv 204 (494)
-....| ..|.+. +.=+.+|+..|+
T Consensus 139 Nl~~~I-------~p~s~r~dl~p~~Sfn~~g~ 164 (193)
T 4fgq_A 139 SLESKI-------LKASARPDLKPVYSFNAEGL 164 (193)
T ss_dssp SSCSSC-------EEGGGCTTEEEEEEECSSCE
T ss_pred CCchhc-------cCchhcCCcceEEeeCCCCe
Confidence 764332 124443 333566766664
No 13
>2ija_A Arylamine N-acetyltransferase 1; arylamide acetylase 1, structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} PDB: 2pqt_A* 2pfr_A*
Probab=70.58 E-value=9 Score=37.64 Aligned_cols=66 Identities=15% Similarity=0.234 Sum_probs=46.0
Q ss_pred HHHH-HhCCccchhHHHHHHHHHHHcCCCEEEE----EeC--------CCceEEEEeeCCCCCeEEeccCCCcCC---CC
Q 011061 119 LKLV-ETKRGRCGEWANCFTLYCRAFGYESRLI----LDF--------TDHVWTECFSQSLGRWMHLDPCEGIYD---RP 182 (494)
Q Consensus 119 ~~LL-~tR~GrCgE~A~lF~~~~RAlGlpAR~V----~~~--------~dHvW~EVy~~~~~rWV~vDP~e~~iD---~P 182 (494)
.|++ ..|-|.|-|...+|..+|+++|++++.+ +.. .+|.=.=|-.++. .| -||..-|..- .|
T Consensus 62 ~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~~rV~~~~~~~~~~~~~H~~l~V~idg~-~y-lvDVGFG~~~~~~~P 139 (295)
T 2ija_A 62 DQVVRRNRGGWCLQVNHLLYWALTTIGFETTMLGGYVYSTPAKKYSTGMIHLLLQVTIDGR-NY-IVDAGSGRSYQMWQP 139 (295)
T ss_dssp HHHHTTCCCBCHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEECSSCCEEEEEEEETTE-EE-EECSCCCGGGCCSSC
T ss_pred HHHhcCCCcEEhHHHHHHHHHHHHHcCCcEEEEEEEEeeCCCCCCCCCCCcEEEEEEECCc-eE-EEeCCCCCccCCCce
Confidence 4455 4677899999999999999999998886 332 3465555666653 56 5777755432 56
Q ss_pred eeee
Q 011061 183 LLYE 186 (494)
Q Consensus 183 llYE 186 (494)
+...
T Consensus 140 l~L~ 143 (295)
T 2ija_A 140 LELI 143 (295)
T ss_dssp EECC
T ss_pred EEcc
Confidence 6554
No 14
>2bsz_A Arylamine N-acetyltransferase 1; acyltransferase, complete proteome; 2.0A {Rhizobium loti} SCOP: d.3.1.5
Probab=69.07 E-value=11 Score=36.78 Aligned_cols=67 Identities=24% Similarity=0.212 Sum_probs=48.2
Q ss_pred HHHH-HhCCccchhHHHHHHHHHHHcCCCEEEEE----e--------CCCceEEEEeeCCCCCeEEeccCCCc--CCCCe
Q 011061 119 LKLV-ETKRGRCGEWANCFTLYCRAFGYESRLIL----D--------FTDHVWTECFSQSLGRWMHLDPCEGI--YDRPL 183 (494)
Q Consensus 119 ~~LL-~tR~GrCgE~A~lF~~~~RAlGlpAR~V~----~--------~~dHvW~EVy~~~~~rWV~vDP~e~~--iD~Pl 183 (494)
.|++ ..|-|.|-|...+|..+++++|++++.+. . ..+|.=.=|-.++. .| -+|+.-|. .-.|+
T Consensus 62 ~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~arV~~~~~~~~~~~~~H~~l~V~idg~-~y-lvDVGFG~~~~~~Pl 139 (278)
T 2bsz_A 62 DKIVLGGRGGYCFEHNLLFMHALKALGFEVGGLAARVLWGQSEDAITARSHMLLRVELDGR-TY-IADVGFGGLTLTAPL 139 (278)
T ss_dssp HHHTTSCCCBCHHHHHHHHHHHHHHHTCEEEEEEEEECSSCCSSSSCCCCEEEEEEEETTE-EE-EECSCCSSSCCCSCE
T ss_pred HHHHhCCCCeehHHHHHHHHHHHHHCCCeEEEEEEEEeeCCCCCCCCCCccEEEEEEECCc-eE-EEeCCCCccCcCceE
Confidence 3444 36778999999999999999999988872 2 13466666777663 57 67887654 35777
Q ss_pred eeec
Q 011061 184 LYEK 187 (494)
Q Consensus 184 lYE~ 187 (494)
....
T Consensus 140 ~L~~ 143 (278)
T 2bsz_A 140 LLEP 143 (278)
T ss_dssp ECCB
T ss_pred EccC
Confidence 6643
No 15
>1e2t_A NAT, N-hydroxyarylamine O-acetyltransferase; acetyl COA dependent; 2.8A {Salmonella typhimurium} SCOP: d.3.1.5
Probab=68.04 E-value=10 Score=37.22 Aligned_cols=67 Identities=24% Similarity=0.272 Sum_probs=48.8
Q ss_pred HHHH-HhCCccchhHHHHHHHHHHHcCCCEEEEE----e-------CCCceEEEEeeCCCCCeEEeccCCCc--CCCCee
Q 011061 119 LKLV-ETKRGRCGEWANCFTLYCRAFGYESRLIL----D-------FTDHVWTECFSQSLGRWMHLDPCEGI--YDRPLL 184 (494)
Q Consensus 119 ~~LL-~tR~GrCgE~A~lF~~~~RAlGlpAR~V~----~-------~~dHvW~EVy~~~~~rWV~vDP~e~~--iD~Pll 184 (494)
.|++ ..|-|.|-|...+|..+++++|++++.+. . ..+|.=.=|-.++. .| -+|..-+. .-.|+.
T Consensus 61 ~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~~rV~~~~~~~~~~~~H~~l~V~idg~-~y-lvDVGFG~~~~~~Pl~ 138 (284)
T 1e2t_A 61 EKLLYARRGGYCFELNGLFERALRDIGFNVRSLLGRVILSHPASLPPRTHRLLLVDVEDE-QW-IADVGFGGQTLTAPLR 138 (284)
T ss_dssp HHHTTTCCCBCHHHHHHHHHHHHHHTTCCEEEEEEEECTTCCSSCCCSCEEEEEEEETTE-EE-EECSCSCTTCCSSCEE
T ss_pred HHHhcCCCcEEhHHHHHHHHHHHHHCCCeEEEEEEEEecCCCCCCCCCccEEEEEEECCc-eE-EEecCCCccCcCceEE
Confidence 5555 45778999999999999999999999873 2 23476666777663 57 57887654 357776
Q ss_pred eec
Q 011061 185 YEK 187 (494)
Q Consensus 185 YE~ 187 (494)
...
T Consensus 139 L~~ 141 (284)
T 1e2t_A 139 LQA 141 (284)
T ss_dssp SCB
T ss_pred ccC
Confidence 643
No 16
>3d9w_A Putative acetyltransferase; arylamine N-acetyltransferase, NAT, X-RAY diffraction, acyltransferase; 2.70A {Nocardia farcinica}
Probab=62.64 E-value=6.7 Score=38.75 Aligned_cols=66 Identities=23% Similarity=0.167 Sum_probs=43.2
Q ss_pred HHHH-HhCCccchhHHHHHHHHHHHcCCCEEEEE----e------CCCceEEEE-eeCCCCCeEEeccCCC-cCCCCeee
Q 011061 119 LKLV-ETKRGRCGEWANCFTLYCRAFGYESRLIL----D------FTDHVWTEC-FSQSLGRWMHLDPCEG-IYDRPLLY 185 (494)
Q Consensus 119 ~~LL-~tR~GrCgE~A~lF~~~~RAlGlpAR~V~----~------~~dHvW~EV-y~~~~~rWV~vDP~e~-~iD~PllY 185 (494)
.|++ ..|-|.|-|...+|..+++++|+.++.+. . ..+|.=.=| -.++.++| -||.--| ..-.|+..
T Consensus 71 ~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~arV~~~~~~~~~~~H~~l~V~~l~dg~~y-lvDVGFG~~~~~Pl~L 149 (293)
T 3d9w_A 71 DKLVHSRRGGYCYENAGLFAAALERLGFGVTGHTGRVTMGAGGLRPATHALLRVTTADDDRVW-MCDVGFGRGPLRPYEL 149 (293)
T ss_dssp HHHTSSSCCBCHHHHHHHHHHHHHHTTCEEEEEEEEECTTCCSCCCEEEEEEEEECSSCSCEE-EECCSSSSCCSSCEES
T ss_pred HHHHHcCCCcChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCccEEEEEEEcCCCCeE-EEecCCCcCcCccEEe
Confidence 3444 36788999999999999999999988873 1 123655555 55512356 5777655 22345544
No 17
>1w4t_A Arylamine N-acetyltransferase; 5- aminosalicylic acid, NAT, xenobiotic metabolism, acyltransferase; 1.95A {Pseudomonas aeruginosa} SCOP: d.3.1.5
Probab=62.32 E-value=5.2 Score=39.68 Aligned_cols=67 Identities=25% Similarity=0.340 Sum_probs=47.1
Q ss_pred HHHH-HhCCccchhHHHHHHHHHHHcCCCEEEE----Ee-C--------CCceEEEEeeCCCCCeEEeccCCCc--CCCC
Q 011061 119 LKLV-ETKRGRCGEWANCFTLYCRAFGYESRLI----LD-F--------TDHVWTECFSQSLGRWMHLDPCEGI--YDRP 182 (494)
Q Consensus 119 ~~LL-~tR~GrCgE~A~lF~~~~RAlGlpAR~V----~~-~--------~dHvW~EVy~~~~~rWV~vDP~e~~--iD~P 182 (494)
.|++ ..|-|.|-|...+|..+++++|++++.+ +. . .+|.=.=|-.++ +.| -+|..-|. .-.|
T Consensus 82 ~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~l~arV~~~~~~~~~~~~~~H~~l~V~idg-~~y-lvDVGFG~~~~~~P 159 (299)
T 1w4t_A 82 AKVVEGSRGGYCFELNSLFARLLLALGYELELLVARVRWGLPDDAPLTQQSHLMLRLYLAE-GEF-LVDVGFGSANPPRA 159 (299)
T ss_dssp HHHTTTTCCBCHHHHHHHHHHHHHHTTCEEEEEEEEECTTCCTTSCCCCEEEEEEEEEETT-EEE-EECSCSGGGCCSSC
T ss_pred HHHHhcCCCcchHhHHHHHHHHHHHcCCeEEEEEEEEEeCCCCcCCCCCCccEEEEEEECC-ceE-EEeCCCCCcCcCee
Confidence 5565 5677899999999999999999999986 22 1 125545566665 357 57877553 3567
Q ss_pred eeeec
Q 011061 183 LLYEK 187 (494)
Q Consensus 183 llYE~ 187 (494)
+....
T Consensus 160 l~L~~ 164 (299)
T 1w4t_A 160 LPLPG 164 (299)
T ss_dssp EESSC
T ss_pred EEccC
Confidence 76643
No 18
>1w5r_A Arylamine N-acetyltransferase; acyltransferase; 1.45A {Mycobacterium smegmatis} SCOP: d.3.1.5 PDB: 1w6f_A* 1gx3_A
Probab=60.15 E-value=5.5 Score=38.97 Aligned_cols=66 Identities=18% Similarity=0.181 Sum_probs=46.2
Q ss_pred HHHH-HhCCccchhHHHHHHHHHHHcCCCEEEE----EeC---------CCceEEEEeeCCCCC--eEEeccCCCc--CC
Q 011061 119 LKLV-ETKRGRCGEWANCFTLYCRAFGYESRLI----LDF---------TDHVWTECFSQSLGR--WMHLDPCEGI--YD 180 (494)
Q Consensus 119 ~~LL-~tR~GrCgE~A~lF~~~~RAlGlpAR~V----~~~---------~dHvW~EVy~~~~~r--WV~vDP~e~~--iD 180 (494)
.|++ ..|-|.|-|...+|..+++++|++++.+ +.. .+|.=.=|-.++. . | -+|..-|. .-
T Consensus 62 ~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~arV~~~~~~~~~~~~~~H~~l~V~idg~-~~~y-lvDVGFG~~~~~ 139 (278)
T 1w5r_A 62 AKLVDRRRGGYQYEHNGLLGYVLEELGFEVERLSGRVVWMRADDAPLPAQTHNVLSVAVPGA-DGRY-LVDVGFGGQTLT 139 (278)
T ss_dssp HHHTTTCCCBCHHHHHHHHHHHHHHHTCEEEEEEEEECTTCCTTCCCCCEEEEEEEEECSSC-SCCE-EECSCSCTTCCS
T ss_pred HHHhcCCCceehHHHHHHHHHHHHHcCCeEEEEEEEEeeCCCCCCCCCCCccEEEEEEECCe-EEEE-EEecCCCccCcC
Confidence 4444 5778899999999999999999999886 221 1254455666653 5 7 57877554 35
Q ss_pred CCeeee
Q 011061 181 RPLLYE 186 (494)
Q Consensus 181 ~PllYE 186 (494)
.|+...
T Consensus 140 ~Pl~L~ 145 (278)
T 1w5r_A 140 SPIRLE 145 (278)
T ss_dssp SCEESC
T ss_pred ceEEcc
Confidence 677664
No 19
>2vfb_A Arylamine N-acetyltransferase; NAT, acetyl COA, mycobacteria, actyltransferase; 2.00A {Mycobacterium marinum} PDB: 2vfc_A* 3ltw_A*
Probab=59.67 E-value=19 Score=35.24 Aligned_cols=66 Identities=23% Similarity=0.221 Sum_probs=47.0
Q ss_pred HHHH-HhCCccchhHHHHHHHHHHHcCCCEEEE----Ee---------CCCceEEEEeeCCCCC--eEEeccCCCc--CC
Q 011061 119 LKLV-ETKRGRCGEWANCFTLYCRAFGYESRLI----LD---------FTDHVWTECFSQSLGR--WMHLDPCEGI--YD 180 (494)
Q Consensus 119 ~~LL-~tR~GrCgE~A~lF~~~~RAlGlpAR~V----~~---------~~dHvW~EVy~~~~~r--WV~vDP~e~~--iD 180 (494)
.|++ ..|-|.|-|...+|..+++++|++++.+ +. ..+|.=.=|-.++ +. | -+|..-|. .-
T Consensus 59 ~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~arV~~~~~~~~~~~~~~H~~l~V~idg-~~~~y-lvDVGFG~~~~~ 136 (280)
T 2vfb_A 59 DKLVDRRRGGYCYEHNGLIGYVLAELGYRVRRLAGRVVWLAPPDAPTPAQTHTVLAVTFPG-CQGPY-LVDVGFGGMTPT 136 (280)
T ss_dssp HHHTTTCCCBCHHHHHHHHHHHHHHHTCEEEEEEEEECTTCCTTSCCCCSCEEEEEEECTT-CSSCE-EECSCSGGGCCS
T ss_pred HHHhcCCCceEhHHHHHHHHHHHHHCCCeEEEEEEEEEeCCCCCCCCCCCCcEEEEEEECC-eEEEE-EEecCCCccCcC
Confidence 4444 5778899999999999999999999886 21 1235556666666 35 7 57877554 35
Q ss_pred CCeeee
Q 011061 181 RPLLYE 186 (494)
Q Consensus 181 ~PllYE 186 (494)
.|+...
T Consensus 137 ~Pl~L~ 142 (280)
T 2vfb_A 137 APLRLE 142 (280)
T ss_dssp SCEESC
T ss_pred ceEEcc
Confidence 677664
No 20
>3lnb_A N-acetyltransferase family protein; arylamine N-acetyltransferase, NAT, acetyltrans acyltransferase; HET: COA; 2.01A {Bacillus anthracis}
Probab=58.69 E-value=9.5 Score=38.23 Aligned_cols=65 Identities=17% Similarity=0.263 Sum_probs=44.1
Q ss_pred HHHH-HhCCccchhHHHHHHHHHHHcCCCEEEEE----eC--------CCceEEEEeeCCCCCeEEeccCCCc--CCCCe
Q 011061 119 LKLV-ETKRGRCGEWANCFTLYCRAFGYESRLIL----DF--------TDHVWTECFSQSLGRWMHLDPCEGI--YDRPL 183 (494)
Q Consensus 119 ~~LL-~tR~GrCgE~A~lF~~~~RAlGlpAR~V~----~~--------~dHvW~EVy~~~~~rWV~vDP~e~~--iD~Pl 183 (494)
.|++ ..|-|.|-|...+|..+++++|++++.+. .. ..|.=.=|-.++. .| -||..-+. .-.|+
T Consensus 88 ~KiV~~~RGGyC~ElN~lf~~~L~~lGf~v~~~~arV~~~~~~~~~~~~~H~~l~V~~~g~-~y-lvDVGFG~~~p~~Pl 165 (309)
T 3lnb_A 88 EKLLIQKRGGLCYELNSLLYYFLMDCGFQVYKVAGTVYDLYDNKWKPDDGHVIIILHHNKK-DY-VIDAGFASHLPLHPV 165 (309)
T ss_dssp HHHTTTCCCBCHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECSTTCEEEEEEEETTE-EE-EECSCSTTCCCCSCE
T ss_pred HHHHHcCCCcchHHHHHHHHHHHHHcCCeEEEEeEEEecCCCCCCCCCCccEEEEEEECCe-EE-EEecCCCCcCcCccE
Confidence 4444 46778999999999999999999988872 22 2466555656553 56 57776553 23454
Q ss_pred ee
Q 011061 184 LY 185 (494)
Q Consensus 184 lY 185 (494)
..
T Consensus 166 pL 167 (309)
T 3lnb_A 166 PF 167 (309)
T ss_dssp ET
T ss_pred ec
Confidence 33
No 21
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=54.61 E-value=8 Score=29.04 Aligned_cols=41 Identities=17% Similarity=0.383 Sum_probs=25.1
Q ss_pred cCCCCCCCCCCcc-ccCCCCCChhhhhcCCceEEEeeeCCCCccccc
Q 011061 67 NAPPCDGCSNETV-GQGMGTPLPSEIQYGAARVELFRCKVCSKITRF 112 (494)
Q Consensus 67 ~~P~C~~Cg~~t~-~~g~~~p~~~E~~~ga~~VE~Y~C~~C~~~~RF 112 (494)
..-+|+.||+... ..-...=++|| ...=-|.|..||+.-||
T Consensus 8 ~~~~Cp~Cg~~~a~f~q~Q~RsaDE-----~mT~Fy~C~~Cg~~w~~ 49 (50)
T 1tfi_A 8 DLFTCGKCKKKNCTYTQVQTRSADE-----PMTTFVVCNECGNRWKF 49 (50)
T ss_dssp CCSCCSSSCSSCEEEEEECSSSSSS-----CCEEEEEESSSCCEEEC
T ss_pred CccCCCCCCCCEEEEEEecCcCCCC-----CceEEEEcCCCCCeEEe
Confidence 4567999998643 21111112333 34457999999997766
No 22
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=51.79 E-value=11 Score=34.55 Aligned_cols=72 Identities=24% Similarity=0.633 Sum_probs=45.7
Q ss_pred HHHHHHHhhcc-CEeecCCCCCC--CCCCccccCCCCCChhhhhcCCceEEEeeeCCCCcccccCCCCCHHHHHHhCCcc
Q 011061 52 LLQLLFWFKQT-FRWVNAPPCDG--CSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGR 128 (494)
Q Consensus 52 l~~LL~wFK~~-F~wv~~P~C~~--Cg~~t~~~g~~~p~~~E~~~ga~~VE~Y~C~~C~~~~RFPRyn~p~~LL~tR~Gr 128 (494)
+.+-+..+|.+ |-| |-|+. |..+....+. ..|+|..|+...-=|.|
T Consensus 29 v~atI~~i~~d~~~Y---~aC~~~~CnKKv~~~~~---------------g~~~CekC~~~~~~~~~------------- 77 (181)
T 1l1o_C 29 SVATVVYLRKENCMY---QACPTQDCNKKVIDQQN---------------GLYRCEKCDTEFPNFKY------------- 77 (181)
T ss_dssp EEEEEEEECCSTTEE---EBCCSTTCCCBCEEETT---------------TEEEETTTTEEESSCCE-------------
T ss_pred EEEEEEEEeCCCEEE---CCCCchhcCCccccCCC---------------CeEECCCCCCcCCCceE-------------
Confidence 44555566665 543 66888 9886543321 15999999865433333
Q ss_pred chhHHHHHHHHHHHcCCCEEEEE-----eCCCceEEEEeeCCCCCeEEec
Q 011061 129 CGEWANCFTLYCRAFGYESRLIL-----DFTDHVWTECFSQSLGRWMHLD 173 (494)
Q Consensus 129 CgE~A~lF~~~~RAlGlpAR~V~-----~~~dHvW~EVy~~~~~rWV~vD 173 (494)
||++ |.+.+.|+-+|.+....=++..
T Consensus 78 -------------------ry~l~~~i~D~Tg~~~~t~F~~~ae~ilG~s 108 (181)
T 1l1o_C 78 -------------------RMILSVNIADFQENQWVTCFQESAEAILGQN 108 (181)
T ss_dssp -------------------EEEEEEEEECSSCEEEEEEEHHHHHHHHSSC
T ss_pred -------------------EEEEEEEEEeCCCCEEEEEEhHHHHHHhCCC
Confidence 6774 6888999999987543334443
No 23
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=49.98 E-value=5.8 Score=35.90 Aligned_cols=29 Identities=28% Similarity=0.616 Sum_probs=21.8
Q ss_pred cCCCCCCCCCCccccCCCCCChhhhhcCCceEEEeeeCCCCccc
Q 011061 67 NAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKIT 110 (494)
Q Consensus 67 ~~P~C~~Cg~~t~~~g~~~p~~~E~~~ga~~VE~Y~C~~C~~~~ 110 (494)
+-|+|+.|+++-..... ++|-|+.|+..-
T Consensus 26 ~lP~CP~C~seytYeDg---------------~l~vCPeC~hEW 54 (138)
T 2akl_A 26 TLPPCPQCNSEYTYEDG---------------ALLVCPECAHEW 54 (138)
T ss_dssp CSCCCTTTCCCCCEECS---------------SSEEETTTTEEE
T ss_pred cCCCCCCCCCcceEecC---------------CeEECCcccccc
Confidence 46999999998665421 269999999864
No 24
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=44.27 E-value=11 Score=28.42 Aligned_cols=38 Identities=26% Similarity=0.502 Sum_probs=21.2
Q ss_pred CCCCCCCCCccc-cCCCCCChhhhhcCCceEEEeeeCCCCcccc
Q 011061 69 PPCDGCSNETVG-QGMGTPLPSEIQYGAARVELFRCKVCSKITR 111 (494)
Q Consensus 69 P~C~~Cg~~t~~-~g~~~p~~~E~~~ga~~VE~Y~C~~C~~~~R 111 (494)
-+|+.||..... .-...-.+|| ...=.|.|..||+.-+
T Consensus 16 ~~Cp~Cg~~~~~~~q~Q~rsade-----p~T~fy~C~~Cg~~w~ 54 (57)
T 1qyp_A 16 ITCPKCGNDTAYWWEMQTRAGDE-----PSTIFYKCTKCGHTWR 54 (57)
T ss_dssp CCCTTTCCSEEEEEEECCSSSSC-----SSEEEEEESSSCCEEE
T ss_pred eECCCCCCCEEEEEEeecccCCC-----CCcEEEEcCCCCCEec
Confidence 469999985432 1111112222 2234699999998643
No 25
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=43.69 E-value=12 Score=34.56 Aligned_cols=42 Identities=17% Similarity=0.397 Sum_probs=25.7
Q ss_pred ecCCCCCCCCCCcc-ccCCCCCChhhhhcCCceEEEeeeCCCCccccc
Q 011061 66 VNAPPCDGCSNETV-GQGMGTPLPSEIQYGAARVELFRCKVCSKITRF 112 (494)
Q Consensus 66 v~~P~C~~Cg~~t~-~~g~~~p~~~E~~~ga~~VE~Y~C~~C~~~~RF 112 (494)
++.-+|+.||+... ..-...=++|| ...=-|.|..||+.-||
T Consensus 135 t~~~~Cp~C~~~~a~~~q~Q~rsaDE-----~mt~f~~C~~C~~~w~f 177 (178)
T 3po3_S 135 TDRFTCGKCKEKKVSYYQLQTRSAAA-----PLTTFCTCEACGNRWKF 177 (178)
T ss_dssp BSSSCCSSSCCSCEECCCCCCSCTTS-----CCCCCEEETTTCCEECC
T ss_pred cCCcCCCCCCCCceEEEEeecccCCC-----CCcEEEEcCCCCCeecc
Confidence 34458999998643 22111122333 23346999999998887
No 26
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=41.76 E-value=15 Score=36.94 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=12.9
Q ss_pred ceEEEeeeCCCCcccc
Q 011061 96 ARVELFRCKVCSKITR 111 (494)
Q Consensus 96 ~~VE~Y~C~~C~~~~R 111 (494)
..+.++.|..|++...
T Consensus 249 ~~~r~e~C~~C~~YlK 264 (309)
T 2fiy_A 249 AVLRAETCPSCQGYLK 264 (309)
T ss_dssp CSEEEEEETTTTEEEE
T ss_pred cceEEEEcccccchHh
Confidence 5677789999998765
No 27
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=38.78 E-value=23 Score=34.30 Aligned_cols=47 Identities=17% Similarity=0.355 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhccCEeecCCCCCCCCCCccccCCCCCChhhhhcCCceEEEeeeCCCCcccccCCCCC
Q 011061 50 AFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYND 117 (494)
Q Consensus 50 ~~l~~LL~wFK~~F~wv~~P~C~~Cg~~t~~~g~~~p~~~E~~~ga~~VE~Y~C~~C~~~~RFPRyn~ 117 (494)
....+|++|.++. --|+.||+++..... . ....|..|+. +.|||...
T Consensus 95 ~~a~~l~~w~~~~------~fC~~CG~~~~~~~~------------~--~~~~C~~C~~-~~yp~~~~ 141 (269)
T 1vk6_A 95 GRGVQLAEFYRSH------KYCGYCGHEMYPSKT------------E--WAMLCSHCRE-RYYPQIAP 141 (269)
T ss_dssp HHHHHHHHHHHTT------SBCTTTCCBEEECSS------------S--SCEEESSSSC-EECCCCEE
T ss_pred HHHHHHHhhhhcC------CccccCCCcCccCCC------------c--eeeeCCCCCC-EecCCCCc
Confidence 3457888887653 238999998764311 0 1347999985 55788653
No 28
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=36.65 E-value=8.4 Score=26.89 Aligned_cols=15 Identities=13% Similarity=0.957 Sum_probs=12.0
Q ss_pred eEEEeeeCCCCcccc
Q 011061 97 RVELFRCKVCSKITR 111 (494)
Q Consensus 97 ~VE~Y~C~~C~~~~R 111 (494)
+.+.|+|+.||..+.
T Consensus 3 ~~~fY~C~~CGnive 17 (36)
T 1dxg_A 3 EGDVYKCELCGQVVK 17 (36)
T ss_dssp TTCEEECTTTCCEEE
T ss_pred cccEEEcCCCCcEEE
Confidence 457899999998654
No 29
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=36.08 E-value=21 Score=32.49 Aligned_cols=116 Identities=13% Similarity=0.245 Sum_probs=69.5
Q ss_pred eeEeecchhhhhccccCCC--------chhhHHHHHHHHHHHHhhc-cCCCcccccccccCCCCchhHHHHhh----hcc
Q 011061 319 TTIYNAFSSVLSHFVENNV--------PKSGAIELLKILKGILGDL-KKSPYKTRRVSLNSVPNNGQKIVHQL----LPS 385 (494)
Q Consensus 319 ~~iY~a~~~~ls~~~~~~~--------~~~~a~~~~~~~r~~~~dl-k~~~fk~R~~~~~~~~~~~~~~~~~~----lps 385 (494)
++||++.++.|...+.... =.-....+.+.+++...+- -+.=.-|=-++....+-+ .+.+.++ ||-
T Consensus 35 G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~s~g~~D~t-~eal~~~~~~~l~G 113 (178)
T 2pjk_A 35 EPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGYSPTDIT-VETIRKLFDREIEG 113 (178)
T ss_dssp CCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSSSTTCCH-HHHHGGGCSEECHH
T ss_pred CeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcch-HHHHHHHhcccCcc
Confidence 5788888866665544331 1112233444444443220 111133333444444434 2344555 456
Q ss_pred HHHHHHhhcccc---cc---------C-CCCCeEEEecCCccccccchh-HhHHHHHHHHHhcc
Q 011061 386 IGHLLRVLSLKS---EL---------N-TDGRVDIVLAGDPVKTSLSLP-VVFKALDDMIHDLN 435 (494)
Q Consensus 386 ~~~ll~~lslk~---~~---------~-~~g~~~~~~~~~p~~tsl~l~-~~~~~~~~~~~~~~ 435 (494)
++.++..+++|. -- + -+|...++|=|||+..-+++- ++++.|..++..++
T Consensus 114 ~~~~~~~v~~~p~~~G~pa~lsr~~~G~~~~~~v~~LPG~P~aa~~~~~~~v~P~l~~~~~~~~ 177 (178)
T 2pjk_A 114 FSDVFRLVSFNDPEVKAAAYLTKASAGIIGKKIVYLLPGSPDAVKLALKELILPEVGHLVYLVR 177 (178)
T ss_dssp HHHHHHHHHHTSTTTGGGGGGCCCEEEEETTEEEEEECSCHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred hHHHhheeeccCCCCCCcchhheeEEEEECCEEEEECCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 788999999987 21 1 257799999999999999887 78888888877664
No 30
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=30.30 E-value=23 Score=35.01 Aligned_cols=31 Identities=26% Similarity=0.544 Sum_probs=20.5
Q ss_pred CCCCCCCCC-ccccCCCCCChhhhhcCCceEEEeeeCCCCccc
Q 011061 69 PPCDGCSNE-TVGQGMGTPLPSEIQYGAARVELFRCKVCSKIT 110 (494)
Q Consensus 69 P~C~~Cg~~-t~~~g~~~p~~~E~~~ga~~VE~Y~C~~C~~~~ 110 (494)
--|+.||+. -...+...|-+| |.|..|+...
T Consensus 35 ~yCPnCG~~~l~~f~nN~PVaD-----------F~C~~C~Eey 66 (257)
T 4esj_A 35 SYCPNCGNNPLNHFENNRPVAD-----------FYCNHCSEEF 66 (257)
T ss_dssp CCCTTTCCSSCEEC----CCCE-----------EECTTTCCEE
T ss_pred CcCCCCCChhhhhccCCCcccc-----------cccCCcchhh
Confidence 459999995 446666666665 9999999753
No 31
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=29.49 E-value=22 Score=35.62 Aligned_cols=49 Identities=18% Similarity=0.423 Sum_probs=32.8
Q ss_pred eecCCCCCCCCCCccc--cCCCCCChhhhhcCCceEEEeeeCCCCcccccCCCCCHHHHHHhCCccchh
Q 011061 65 WVNAPPCDGCSNETVG--QGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGE 131 (494)
Q Consensus 65 wv~~P~C~~Cg~~t~~--~g~~~p~~~E~~~ga~~VE~Y~C~~C~~~~RFPRyn~p~~LL~tR~GrCgE 131 (494)
| +..-|+.||+.-.. +..+ ++..+.-...|..|++.-+|+|. +.-.||+
T Consensus 180 ~-~~~~CPvCGs~P~~s~l~~~--------g~~~G~R~l~Cs~C~t~W~~~R~---------~C~~Cg~ 230 (309)
T 2fiy_A 180 E-SRTLCPACGSPPMAGMIRQG--------GKETGLRYLSCSLCACEWHYVRI---------KCSHCEE 230 (309)
T ss_dssp T-TCSSCTTTCCCEEEEEEEC------------CCEEEEEETTTCCEEECCTT---------SCSSSCC
T ss_pred c-cCCCCCCCCCcCceeEEeec--------CCCCCcEEEEeCCCCCEEeecCc---------CCcCCCC
Confidence 6 56889999996432 2110 12244557899999999999995 4666765
No 32
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=29.36 E-value=17 Score=31.65 Aligned_cols=18 Identities=28% Similarity=0.648 Sum_probs=15.6
Q ss_pred EEEeeeCCCCcccccCCC
Q 011061 98 VELFRCKVCSKITRFPRY 115 (494)
Q Consensus 98 VE~Y~C~~C~~~~RFPRy 115 (494)
.=+|.|..||...|||--
T Consensus 92 ~vv~tCl~Cg~~kR~p~~ 109 (120)
T 1x0t_A 92 HVVITCLECGYIMRYPYL 109 (120)
T ss_dssp EEEEEETTTCCEEEEECC
T ss_pred EEEEECCCCCCEEEEccC
Confidence 567999999999999954
No 33
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=29.27 E-value=23 Score=32.85 Aligned_cols=71 Identities=11% Similarity=0.161 Sum_probs=49.7
Q ss_pred cccccCCCCchhHHHHhh----hccHHHHHHhhcccc-c---------cC-CCCCeEEEecCCccccccchhHhHHHHHH
Q 011061 365 RVSLNSVPNNGQKIVHQL----LPSIGHLLRVLSLKS-E---------LN-TDGRVDIVLAGDPVKTSLSLPVVFKALDD 429 (494)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~----lps~~~ll~~lslk~-~---------~~-~~g~~~~~~~~~p~~tsl~l~~~~~~~~~ 429 (494)
=++....+-+ .+.+.++ +|-++.++..+++|. . .+ .+|...++|-|||+..-.++-++++.|..
T Consensus 98 Gts~g~~D~t-~eal~~l~~~~l~G~~~~f~~v~~kpG~p~a~lsR~~~G~~~~~~V~~LPGnP~aa~~~~~~l~P~L~~ 176 (185)
T 3rfq_A 98 GTGVTPRDVT-PESTREILDREILGIAEAIRASGLSAGIIDAGLSRGLAGVSGSTLVVNLAGSRYAVRDGMATLNPLAAH 176 (185)
T ss_dssp CCSSSTTCCH-HHHHHTTCSEECHHHHHHHHHHHHHTTCHHHHTCCCCEEEETTEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcccH-HHHHHHHhcccCccHHHHHHHHhcCCCCCceeeeehhhcccCCeEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 3344444444 2344554 577888999999976 1 12 25678999999999999888888888888
Q ss_pred HHHhccc
Q 011061 430 MIHDLNN 436 (494)
Q Consensus 430 ~~~~~~~ 436 (494)
++..++.
T Consensus 177 ~~~~l~g 183 (185)
T 3rfq_A 177 IIGQLSS 183 (185)
T ss_dssp HHHHHC-
T ss_pred HHHHHhc
Confidence 8776653
No 34
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=29.01 E-value=58 Score=32.20 Aligned_cols=111 Identities=13% Similarity=0.170 Sum_probs=54.2
Q ss_pred cCCCCCCCCCCcc---ccCCC-----CCChhhh-hcCCceEEEeeeCCCCcccccCCCCCHHHHHHhCC----ccchhHH
Q 011061 67 NAPPCDGCSNETV---GQGMG-----TPLPSEI-QYGAARVELFRCKVCSKITRFPRYNDPLKLVETKR----GRCGEWA 133 (494)
Q Consensus 67 ~~P~C~~Cg~~t~---~~g~~-----~p~~~E~-~~ga~~VE~Y~C~~C~~~~RFPRyn~p~~LL~tR~----GrCgE~A 133 (494)
+...|+.||++.. ..|.. -..+++. .......++++|..|+....-+.. ++..++...- +.-..|.
T Consensus 11 ~~~~C~~Cg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~C~~Cg~v~~~~~~-~~~~~y~~~y~~~~~~~~~~~ 89 (416)
T 4e2x_A 11 PPTACRVCGGGVQEFLDLGRQPLSDRFRKPDELDDEFTYRLAVGRCDSCEMVQLTEEV-PRDLMFHEVYPYHSSGSSVMR 89 (416)
T ss_dssp -CEECTTTSCEEEEEEEEEEEECTTCCBCTTSCSCCCEEEEEEEEETTTCCEEESSCC-CHHHHSSTTCCCCGGGCHHHH
T ss_pred cCCcCCCCCCeeeeeeECCCCCccccCCChhhcCccceecceEEECCCCCceeecCcC-CHHHhccCCccCcCcCCHHHH
Confidence 3446999999821 11211 1112222 233457899999999977654433 5665554211 2212222
Q ss_pred ----HHHHHHHHHcCCC-EEEEEe--CCCceEEEEeeCCCCCeEEeccCCCc
Q 011061 134 ----NCFTLYCRAFGYE-SRLILD--FTDHVWTECFSQSLGRWMHLDPCEGI 178 (494)
Q Consensus 134 ----~lF~~~~RAlGlp-AR~V~~--~~dHvW~EVy~~~~~rWV~vDP~e~~ 178 (494)
...-.+++.+++. ..-|+| -.+=.++....+...+.+++|+....
T Consensus 90 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~ 141 (416)
T 4e2x_A 90 EHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGV 141 (416)
T ss_dssp HHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHH
Confidence 2223344556653 334554 11212222222222367899997543
No 35
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.16 E-value=31 Score=28.74 Aligned_cols=29 Identities=17% Similarity=0.573 Sum_probs=19.2
Q ss_pred CCCCCCCCCccccCCCCCChhhhhcCCceEEEeeeCCCCcccc
Q 011061 69 PPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITR 111 (494)
Q Consensus 69 P~C~~Cg~~t~~~g~~~p~~~E~~~ga~~VE~Y~C~~C~~~~R 111 (494)
-.|+.||...+.- ..|=+++|.+|+...-
T Consensus 36 y~CpfCGk~~vkR--------------~a~GIW~C~kCg~~~A 64 (83)
T 3j21_i 36 HTCPVCGRKAVKR--------------ISTGIWQCQKCGATFA 64 (83)
T ss_dssp BCCSSSCSSCEEE--------------EETTEEEETTTCCEEE
T ss_pred cCCCCCCCceeEe--------------cCcCeEEcCCCCCEEe
Confidence 3599999864311 1233799999997654
No 36
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=27.78 E-value=13 Score=30.70 Aligned_cols=36 Identities=22% Similarity=0.550 Sum_probs=22.8
Q ss_pred CCCCCCCCccc-cCCCCCChhhhhcCCceEEEeeeCCCCcccc--cCCCCCHHH
Q 011061 70 PCDGCSNETVG-QGMGTPLPSEIQYGAARVELFRCKVCSKITR--FPRYNDPLK 120 (494)
Q Consensus 70 ~C~~Cg~~t~~-~g~~~p~~~E~~~ga~~VE~Y~C~~C~~~~R--FPRyn~p~~ 120 (494)
+|+.||.+... .+ +-+.+|+.|+...- ---+++|..
T Consensus 29 ~Cp~CG~~~v~r~a---------------tGiW~C~~Cg~~~aggay~~~t~~~ 67 (83)
T 1vq8_Z 29 ACPNCGEDRVDRQG---------------TGIWQCSYCDYKFTGGSYKPETPGG 67 (83)
T ss_dssp ECSSSCCEEEEEEE---------------TTEEEETTTCCEEECCSSSSSCHHH
T ss_pred cCCCCCCcceeccC---------------CCeEECCCCCCEecCCEecccchHH
Confidence 69999986442 22 12789999998633 334455543
No 37
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=27.51 E-value=26 Score=31.31 Aligned_cols=53 Identities=13% Similarity=0.355 Sum_probs=35.9
Q ss_pred hccHHHHHHhhcccccc------------C-CCCCeEEEecCCccccccchh-HhHHHHHHHHHhcc
Q 011061 383 LPSIGHLLRVLSLKSEL------------N-TDGRVDIVLAGDPVKTSLSLP-VVFKALDDMIHDLN 435 (494)
Q Consensus 383 lps~~~ll~~lslk~~~------------~-~~g~~~~~~~~~p~~tsl~l~-~~~~~~~~~~~~~~ 435 (494)
++-++.++..+++|..- + -+|...++|-|+|+..-..+- .+++.|..++..++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~G~~~~~~i~~LPG~P~~~~~~~~~~v~P~L~h~~~~ir 177 (178)
T 3iwt_A 111 IEGFSDVFRLVSFNDPEVKAAAYLTKASAGIIGKKIVYLLPGSPDAVKLALKELILPEVGHLVYLVR 177 (178)
T ss_dssp CHHHHHHHHHHHHTSTTTGGGGGGCCCEEEEETTEEEEEECSCHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHhccccccccccccccceeeECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556666666665421 1 267789999999998877775 56677777776654
No 38
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=26.90 E-value=36 Score=28.90 Aligned_cols=36 Identities=25% Similarity=0.474 Sum_probs=22.2
Q ss_pred CCCCCCCCccccCCCCCChhhhhcCCceEEEeeeCCCCcccc--cCCCCCHH
Q 011061 70 PCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITR--FPRYNDPL 119 (494)
Q Consensus 70 ~C~~Cg~~t~~~g~~~p~~~E~~~ga~~VE~Y~C~~C~~~~R--FPRyn~p~ 119 (494)
.|+.||...+.- ..|-+++|.+|+...- =-.+++|.
T Consensus 38 ~CpfCgk~~vkR--------------~a~GIW~C~~Cg~~~AGGAy~~~T~~ 75 (92)
T 3iz5_m 38 FCEFCGKFAVKR--------------KAVGIWGCKDCGKVKAGGAYTMNTAS 75 (92)
T ss_dssp CCTTTCSSCBEE--------------EETTEEECSSSCCEEECCSSSSCCHH
T ss_pred cCcccCCCeeEe--------------cCcceEEcCCCCCEEeCCcccCCCcH
Confidence 599999864311 1233799999997654 23344443
No 39
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.10 E-value=22 Score=26.65 Aligned_cols=27 Identities=15% Similarity=0.358 Sum_probs=17.5
Q ss_pred CCCCCCCCCccccCCCCCChhhhhcCCceEEEeeeCCCCcc
Q 011061 69 PPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKI 109 (494)
Q Consensus 69 P~C~~Cg~~t~~~g~~~p~~~E~~~ga~~VE~Y~C~~C~~~ 109 (494)
.-|+.||+....... -+.+.|..||.+
T Consensus 20 k~CP~CG~~~fm~~~--------------~~R~~C~kCG~t 46 (50)
T 3j20_Y 20 KFCPRCGPGVFMADH--------------GDRWACGKCGYT 46 (50)
T ss_dssp EECSSSCSSCEEEEC--------------SSEEECSSSCCE
T ss_pred ccCCCCCCceEEecC--------------CCeEECCCCCCE
Confidence 348899986443311 146899999864
No 40
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=25.43 E-value=20 Score=31.38 Aligned_cols=20 Identities=25% Similarity=0.635 Sum_probs=16.7
Q ss_pred eEEEeeeCCCCcccccCCCC
Q 011061 97 RVELFRCKVCSKITRFPRYN 116 (494)
Q Consensus 97 ~VE~Y~C~~C~~~~RFPRyn 116 (494)
..=+|.|..||...|||--.
T Consensus 86 ~~vv~tCl~Cg~~kR~p~~~ 105 (123)
T 2k3r_A 86 PHIVVKCLECGHIMRYPYIK 105 (123)
T ss_dssp CEEEEEETTTTEEEEEECCC
T ss_pred cEEEEECCCCCCEEEEecCc
Confidence 35679999999999999744
No 41
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=24.89 E-value=33 Score=34.19 Aligned_cols=41 Identities=20% Similarity=0.431 Sum_probs=24.8
Q ss_pred cCCCCCCCCCCcc-ccCCCCCChhhhhcCCceEEEeeeCCCCccccc
Q 011061 67 NAPPCDGCSNETV-GQGMGTPLPSEIQYGAARVELFRCKVCSKITRF 112 (494)
Q Consensus 67 ~~P~C~~Cg~~t~-~~g~~~p~~~E~~~ga~~VE~Y~C~~C~~~~RF 112 (494)
+.-.|+.||.... +.-...=++|| ...=-|.|..||+.-+|
T Consensus 267 ~~~~C~~C~~~~~~~~q~Q~rsaDe-----~~t~f~~C~~Cg~~w~f 308 (309)
T 1pqv_S 267 DRFTCGKCKEKKVSYYQLQTRSADE-----PLTTFCTCEACGNRWKF 308 (309)
T ss_pred ccccCCCCCCCeeEEEEeecccCCC-----CCcEEEEeCCCCCceec
Confidence 3557999998643 22111112332 22346999999998777
No 42
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=24.73 E-value=15 Score=30.86 Aligned_cols=41 Identities=15% Similarity=0.357 Sum_probs=22.3
Q ss_pred CCCCCCCCccccCCCCCChhhhhcCC---ceEEEeeeCCCCcccc
Q 011061 70 PCDGCSNETVGQGMGTPLPSEIQYGA---ARVELFRCKVCSKITR 111 (494)
Q Consensus 70 ~C~~Cg~~t~~~g~~~p~~~E~~~ga---~~VE~Y~C~~C~~~~R 111 (494)
.|+.||+.+...+.. +..-+..+.. ..|..|.|..||...-
T Consensus 4 ~Cp~Cg~~~~~~~~~-~~~~~~kg~~~~v~~v~~~~C~~CGE~~~ 47 (133)
T 3o9x_A 4 KCPVCHQGEMVSGIK-DIPYTFRGRKTVLKGIHGLYCVHCEESIM 47 (133)
T ss_dssp BCTTTSSSBEEEEEE-EEEEEETTEEEEEEEEEEEEESSSSCEEC
T ss_pred CCCcCCCCceeeceE-EEEEEECCEEEEECCCceeECCCCCCEee
Confidence 699999874322211 1111111111 2356899999998753
No 43
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=24.73 E-value=40 Score=30.24 Aligned_cols=115 Identities=11% Similarity=0.168 Sum_probs=67.4
Q ss_pred eeEeecchhhhhccccCCC---------chhhHHHHHHHHHHHHhhccCCCcccccccccCCCCchhHHHHhh----hcc
Q 011061 319 TTIYNAFSSVLSHFVENNV---------PKSGAIELLKILKGILGDLKKSPYKTRRVSLNSVPNNGQKIVHQL----LPS 385 (494)
Q Consensus 319 ~~iY~a~~~~ls~~~~~~~---------~~~~a~~~~~~~r~~~~dlk~~~fk~R~~~~~~~~~~~~~~~~~~----lps 385 (494)
.+||++.++.|...+.+.. .-. ..+.+.+++...+--+.=.-|==++....+-+ .+.+.++ +|-
T Consensus 22 G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd--~~i~~al~~a~~~~~DlVittGG~s~g~~D~t-~eal~~~~~~~lpG 98 (164)
T 3pzy_A 22 GEYEDRCGPIITEWLAQQGFSSAQPEVVADG--SPVGEALRKAIDDDVDVILTSGGTGIAPTDST-PDQTVAVVDYLIPG 98 (164)
T ss_dssp ----CCHHHHHHHHHHHTTCEECCCEEECSS--HHHHHHHHHHHHTTCSEEEEESCCSSSTTCCH-HHHHHTTCSEECHH
T ss_pred CceeeHHHHHHHHHHHHCCCEEEEEEEeCCH--HHHHHHHHHHHhCCCCEEEECCCCCCCCCccH-HHHHHHHhcccCcc
Confidence 5788888866665544321 222 44555555544211121122333344444434 2344555 567
Q ss_pred HHHHHHhhcccccc---------C-CCCCeEEEecCCccccccchhHhHHHHHHHHHhccc
Q 011061 386 IGHLLRVLSLKSEL---------N-TDGRVDIVLAGDPVKTSLSLPVVFKALDDMIHDLNN 436 (494)
Q Consensus 386 ~~~ll~~lslk~~~---------~-~~g~~~~~~~~~p~~tsl~l~~~~~~~~~~~~~~~~ 436 (494)
++.++...++|..= + .+++..++|=|||+..-.++-+++++|..++..++.
T Consensus 99 ~~~~~~~~~~~~~p~a~lsr~~~G~~~~~~v~~LPG~P~aa~~~~~~v~P~l~~~~~~~~g 159 (164)
T 3pzy_A 99 LAEAIRRSGLPKVPTSVLSRGVCGVAGQTLIVNLPGSPGGVRDGLGVLAGVLDHALDQLAG 159 (164)
T ss_dssp HHHHHHHTTTTTCGGGGGCCCCEEEETTEEEEEECSSHHHHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHhhccCCCCccccchhhhcccCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78888888888521 1 246799999999999888888888888888877754
No 44
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=24.12 E-value=35 Score=27.77 Aligned_cols=29 Identities=24% Similarity=0.619 Sum_probs=18.8
Q ss_pred CCCCCCCCCccccCCCCCChhhhhcCCceEEEeeeCCCCcccc
Q 011061 69 PPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITR 111 (494)
Q Consensus 69 P~C~~Cg~~t~~~g~~~p~~~E~~~ga~~VE~Y~C~~C~~~~R 111 (494)
-.|+.||...+.- ..|-+++|.+|+...-
T Consensus 27 y~C~fCgk~~vkR--------------~a~GIW~C~~C~~~~A 55 (72)
T 3jyw_9 27 YDCSFCGKKTVKR--------------GAAGIWTCSCCKKTVA 55 (72)
T ss_dssp BCCSSCCSSCBSB--------------CSSSCBCCSSSCCCCC
T ss_pred ccCCCCCCceeEe--------------cCCCeEECCCCCCEEe
Confidence 3599999864311 1134789999997543
No 45
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=23.62 E-value=42 Score=28.50 Aligned_cols=29 Identities=24% Similarity=0.619 Sum_probs=19.0
Q ss_pred CCCCCCCCCccccCCCCCChhhhhcCCceEEEeeeCCCCcccc
Q 011061 69 PPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITR 111 (494)
Q Consensus 69 P~C~~Cg~~t~~~g~~~p~~~E~~~ga~~VE~Y~C~~C~~~~R 111 (494)
-.|+.||...+.- ..|-+++|.+|+...-
T Consensus 37 y~CpfCgk~~vkR--------------~a~GIW~C~~C~~~~A 65 (92)
T 3izc_m 37 YDCSFCGKKTVKR--------------GAAGIWTCSCCKKTVA 65 (92)
T ss_dssp CCCSSSCSSCCEE--------------EETTEEECTTTCCEEE
T ss_pred CcCCCCCCceeee--------------cccceEEcCCCCCEEe
Confidence 4599999854311 1233799999997654
No 46
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=21.22 E-value=38 Score=29.34 Aligned_cols=28 Identities=36% Similarity=0.752 Sum_probs=18.4
Q ss_pred CCCCCCCCccccCCCCCChhhhhcCCceEEEeeeCCCCcccc
Q 011061 70 PCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITR 111 (494)
Q Consensus 70 ~C~~Cg~~t~~~g~~~p~~~E~~~ga~~VE~Y~C~~C~~~~R 111 (494)
.|+.||...+.- ..|-+++|.+|+...-
T Consensus 38 ~CpfCgk~~vKR--------------~a~GIW~C~kCg~~~A 65 (103)
T 4a17_Y 38 GCPFCGKVAVKR--------------AAVGIWKCKPCKKIIA 65 (103)
T ss_dssp ECTTTCCEEEEE--------------EETTEEEETTTTEEEE
T ss_pred CCCCCCCceeee--------------cCcceEEcCCCCCEEe
Confidence 399999854311 1133799999997654
No 47
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=21.17 E-value=48 Score=26.06 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=17.9
Q ss_pred EeecCCCCCCCCCCccccCCCCCChhh
Q 011061 64 RWVNAPPCDGCSNETVGQGMGTPLPSE 90 (494)
Q Consensus 64 ~wv~~P~C~~Cg~~t~~~g~~~p~~~E 90 (494)
.|+++..|+.||.+|...-...=+||+
T Consensus 13 ~YTLk~~CP~CG~~t~~ahParfSP~D 39 (60)
T 2aus_D 13 RYTLKETCPVCGEKTKVAHPPRFSPED 39 (60)
T ss_dssp CEESSSBCTTTCSBCEESSCCCCCSCC
T ss_pred CEEccccCcCCCCccCCCCCCCCCCCC
Confidence 577788888888887765443334544
No 48
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=21.12 E-value=28 Score=32.25 Aligned_cols=72 Identities=17% Similarity=0.233 Sum_probs=44.2
Q ss_pred HHHHHHHhhccCEeecCCCCCCCCCCccccCCCCCChhhhhcCCceEEEeeeCCCCcccccCCCCCHHHHHHhCCccchh
Q 011061 52 LLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGE 131 (494)
Q Consensus 52 l~~LL~wFK~~F~wv~~P~C~~Cg~~t~~~g~~~p~~~E~~~ga~~VE~Y~C~~C~~~~RFPRyn~p~~LL~tR~GrCgE 131 (494)
|++-+...|.+-.|+. |-|+.|..+....+. ..|+|.+|+.. .=|.
T Consensus 27 v~atI~~Ik~d~~~~Y-~ACp~CnKKV~~~~~---------------g~~~CekC~~~-~~~~----------------- 72 (172)
T 3u50_C 27 VYGNLVSIQMKNKLYY-YRCTCQGKSVLKYHG---------------DSFFCESCQQF-INPQ----------------- 72 (172)
T ss_dssp EEEEEECCCCSSCCEE-EECTTSCCCEEEETT---------------TEEEETTTTEE-CCCE-----------------
T ss_pred EEEEEEEEcCCCcEEe-hhchhhCCEeeeCCC---------------CeEECCCCCCC-CCce-----------------
Confidence 4455555555522322 668889887553321 26999999986 3222
Q ss_pred HHHHHHHHHHHcCCCEEEEE-----eCCCceEEEEeeCCCCCeEEe
Q 011061 132 WANCFTLYCRAFGYESRLIL-----DFTDHVWTECFSQSLGRWMHL 172 (494)
Q Consensus 132 ~A~lF~~~~RAlGlpAR~V~-----~~~dHvW~EVy~~~~~rWV~v 172 (494)
.||++ |.+++.|+-+|.+....=++.
T Consensus 73 ---------------~RYil~~~i~D~TG~~wvt~F~e~ae~ilG~ 103 (172)
T 3u50_C 73 ---------------VHLMLRAFVQDSTGTIPVMIFDQQSSQLINQ 103 (172)
T ss_dssp ---------------EEECEEEEEEETTEEEEEEECHHHHHHHHHH
T ss_pred ---------------EEEEEEEEEEeCCCCEEEEEEhHHHHHHhCC
Confidence 35553 688899999997654334444
Done!