BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011062
(494 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
Length = 460
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/434 (20%), Positives = 173/434 (39%), Gaps = 14/434 (3%)
Query: 46 EEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGL 105
+EA + + + P+++ +V+ + V + AG + + +A ++A S ++ F GL
Sbjct: 9 KEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAAS-IWLPSILFGVGL 67
Query: 106 SGALETLCGQGFGAKQYRMLGIYMQTXXXXXXXXXXXXXXLWFYTEPILILLHQDPNISE 165
AL + Q GA + + + + F T+ I+ + + ++
Sbjct: 68 LMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMAT 127
Query: 166 QAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSALPLAIHFGIAYSLVHWT--- 222
+ YM +I + A+ Q F S+ P + + L ++ + + V+
Sbjct: 128 KTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGA 187
Query: 223 -SLGFGGAPLACSISLWISTLSLAIYILCSKKTG--RTWEGFSFESFSVLLTNLKVAMPS 279
LG G +A +I WI L L YI+ SK+ + +E F L+ ++ P
Sbjct: 188 PELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPV 247
Query: 280 AAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNEL 339
AA + E F ++ L + ++ ++ +A+ N ++ + F + AA S RV ++L
Sbjct: 248 AAALFFEVTLFAVVALLVAPLGSTVVAAHQVAL--NFSSLVFMFPMSIGAAVSIRVGHKL 305
Query: 340 GAGTIDRAKNXXXXXXXXXXXXXXXXXXXXXFGHNIWASFFTDSREIVQEFASMTPFIVI 399
G A A +T+++ +V + F I
Sbjct: 306 GEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAI 365
Query: 400 SIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGF-----KLNLYVKGLW 454
DA+Q + +G RG +++ +G+P + G + L KG W
Sbjct: 366 YQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFW 425
Query: 455 IGLVCGLASQACSL 468
+G + GL++ A L
Sbjct: 426 LGFIIGLSAAALML 439
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody
pdb|4HUL|A Chain A, Mate Transporter Norm-ng In Complex With Cs+ And Monobody
pdb|4HUM|A Chain A, Mate Transporter Norm-ng In Complex With Ethidium And
Monobody
pdb|4HUN|A Chain A, Mate Transporter Norm-ng In Complex With R6g And Monobody
Length = 459
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 95/433 (21%), Positives = 162/433 (37%), Gaps = 14/433 (3%)
Query: 45 VEEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQG 104
++E + +LPM+L V+ I V + AG G+ LA L +S A+ T + G
Sbjct: 10 LKEIRLLTALALPMLLAQVAQVGIGFVDTVMAGGAGKEDLAAVALGSS-AFATVYITFMG 68
Query: 105 LSGALETLCGQGFGAKQYRMLG-IYMQTXXXXXXXXXXXXXXLWFYTEPI---LILLHQD 160
+ AL + Q +GA + G Q +W P L L
Sbjct: 69 IMAALNPMIAQLYGAGKTGEAGETGRQGIWFGLILGIFGMILMWAAITPFRNWLTLSDYV 128
Query: 161 PNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSA--LPLAIHFGIAYSL 218
Q L+ +P L + L ++M LV F+A L + +++ Y
Sbjct: 129 EGTMAQYMLFTSLAMPAAMVHRALHAYASSLNRPRLIM-LVSFAAFVLNVPLNYIFVYGK 187
Query: 219 VHWTSLGFGGAPLACSISLWISTLSLAIYILCSK---KTGRTWEGFSFESFSVLLTNLKV 275
+LG G +A W S L+L IYI K G T + F ++V K+
Sbjct: 188 FGMPALGGAGCGVATMAVFWFSALALWIYIAKEKFFRPFGLTAK-FGKPDWAVFKQIWKI 246
Query: 276 AMPSAAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRV 335
P LE +F +VFL + P E + + ++ I Y + +A + R+
Sbjct: 247 GAPIGLSYFLEASAFSFIVFL--IAPFGEDYVAAQQVGISLSGILYMIPQSVGSAGTVRI 304
Query: 336 SNELGAGTIDRAKNXXXXXXXXXXXXXXXXXXXXXFGHNIWASFFTDSREIVQEFASMTP 395
LG RA+ + AS + D ++ +++
Sbjct: 305 GFSLGRREFSRARYISGVSLVSGWVLAVITVLSLVLFRSPLASMYNDDPAVLSIASTVLL 364
Query: 396 FIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLYVKGLWI 455
F + D Q I S RG + ++++ A F+ G+ L ++ ++ + G W
Sbjct: 365 FAGLFQPADFTQCIASYALRGYKVTKVPMFIHAAAFWGCGLLPGYLLAYRFDMGIYGFWT 424
Query: 456 GLVCGLASQACSL 468
L+ L A +L
Sbjct: 425 ALIASLTIAAVAL 437
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.139 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,420,456
Number of Sequences: 62578
Number of extensions: 432238
Number of successful extensions: 744
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 739
Number of HSP's gapped (non-prelim): 3
length of query: 494
length of database: 14,973,337
effective HSP length: 103
effective length of query: 391
effective length of database: 8,527,803
effective search space: 3334370973
effective search space used: 3334370973
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)