Query 011062
Match_columns 494
No_of_seqs 265 out of 1999
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 07:41:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011062.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011062hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 8.8E-57 1.9E-61 443.4 55.5 439 44-486 12-454 (455)
2 PRK10189 MATE family multidrug 100.0 8.2E-54 1.8E-58 426.4 55.7 441 36-479 16-466 (478)
3 PRK00187 multidrug efflux prot 100.0 4.2E-52 9.1E-57 414.2 55.7 431 42-475 3-444 (464)
4 PRK01766 multidrug efflux prot 100.0 9.7E-50 2.1E-54 398.9 55.6 434 45-481 8-448 (456)
5 PRK10367 DNA-damage-inducible 100.0 2.1E-49 4.6E-54 391.1 54.1 424 45-479 5-434 (441)
6 PRK09575 vmrA multidrug efflux 100.0 1.2E-49 2.7E-54 396.0 51.8 426 44-474 7-435 (453)
7 TIGR01695 mviN integral membra 100.0 4.4E-37 9.5E-42 312.3 50.2 413 51-475 2-428 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 6.4E-37 1.4E-41 310.2 48.5 415 52-475 2-434 (488)
9 TIGR00797 matE putative efflux 100.0 1.5E-36 3.3E-41 293.0 43.2 338 57-397 1-341 (342)
10 PRK15099 O-antigen translocase 100.0 6E-35 1.3E-39 288.7 45.7 405 51-474 3-411 (416)
11 KOG1347 Uncharacterized membra 100.0 9.2E-36 2E-40 291.2 33.3 440 45-486 24-463 (473)
12 PF03023 MVIN: MviN-like prote 100.0 6.8E-30 1.5E-34 252.7 49.2 387 79-476 5-404 (451)
13 COG0728 MviN Uncharacterized m 100.0 5.6E-28 1.2E-32 234.3 50.7 420 49-476 7-438 (518)
14 PRK10459 colanic acid exporter 100.0 4.4E-28 9.6E-33 245.3 46.1 398 48-474 4-404 (492)
15 COG2244 RfbX Membrane protein 100.0 1E-25 2.2E-30 227.6 41.2 392 46-459 3-396 (480)
16 PRK00187 multidrug efflux prot 99.9 2E-21 4.3E-26 194.0 28.8 208 42-250 229-443 (464)
17 COG0534 NorM Na+-driven multid 99.9 3E-21 6.4E-26 191.0 28.7 210 265-477 12-223 (455)
18 PRK10189 MATE family multidrug 99.9 8.4E-21 1.8E-25 189.6 28.4 206 266-474 25-236 (478)
19 PRK10367 DNA-damage-inducible 99.9 7.7E-21 1.7E-25 188.1 27.6 207 266-474 5-211 (441)
20 PRK01766 multidrug efflux prot 99.9 2.2E-20 4.7E-25 187.2 27.5 208 42-250 232-441 (456)
21 PRK09575 vmrA multidrug efflux 99.9 1.4E-20 2.9E-25 187.8 25.6 207 266-475 8-215 (453)
22 TIGR01695 mviN integral membra 99.8 1.1E-17 2.3E-22 170.3 30.2 206 43-250 217-427 (502)
23 PF01943 Polysacc_synt: Polysa 99.8 2.5E-16 5.3E-21 146.9 32.1 270 52-338 2-272 (273)
24 TIGR00797 matE putative efflux 99.8 7.3E-17 1.6E-21 155.7 26.3 194 278-474 1-196 (342)
25 PF01554 MatE: MatE; InterPro 99.8 2.1E-18 4.6E-23 147.3 8.4 162 278-441 1-162 (162)
26 PF03023 MVIN: MviN-like prote 99.7 3.2E-15 7E-20 148.3 31.4 208 43-252 192-404 (451)
27 TIGR02900 spore_V_B stage V sp 99.7 5.1E-16 1.1E-20 157.5 24.9 203 43-250 219-433 (488)
28 PF01554 MatE: MatE; InterPro 99.7 3.7E-18 8.1E-23 145.8 6.0 160 57-217 1-162 (162)
29 COG0728 MviN Uncharacterized m 99.7 6.7E-14 1.5E-18 136.7 35.5 210 41-252 224-438 (518)
30 PRK15099 O-antigen translocase 99.7 5.1E-15 1.1E-19 146.6 25.8 203 40-249 206-410 (416)
31 PRK10459 colanic acid exporter 99.7 1.2E-13 2.5E-18 140.1 34.6 201 43-249 201-403 (492)
32 PF13440 Polysacc_synt_3: Poly 99.6 7.7E-13 1.7E-17 121.7 31.0 246 67-337 2-250 (251)
33 COG2244 RfbX Membrane protein 99.6 4.1E-13 8.9E-18 135.8 26.4 186 45-236 209-396 (480)
34 PF04506 Rft-1: Rft protein; 99.4 2.9E-09 6.4E-14 106.6 33.6 421 53-475 5-470 (549)
35 KOG1347 Uncharacterized membra 99.3 6.2E-10 1.3E-14 109.9 20.8 207 266-476 24-231 (473)
36 KOG2864 Nuclear division RFT1 99.3 8.8E-08 1.9E-12 89.7 33.2 417 47-475 6-449 (530)
37 PF07260 ANKH: Progressive ank 99.1 5.2E-07 1.1E-11 81.1 28.7 267 44-317 6-286 (345)
38 PF04506 Rft-1: Rft protein; 98.5 3.8E-05 8.3E-10 77.4 22.0 202 49-251 253-470 (549)
39 PF14667 Polysacc_synt_C: Poly 98.4 2.5E-05 5.3E-10 65.0 16.9 79 171-251 2-80 (146)
40 PF14667 Polysacc_synt_C: Poly 98.3 5.3E-06 1.2E-10 69.1 9.6 81 393-476 1-81 (146)
41 KOG2864 Nuclear division RFT1 98.2 0.00011 2.4E-09 69.5 16.1 199 51-251 241-449 (530)
42 PF01943 Polysacc_synt: Polysa 98.1 0.00087 1.9E-08 62.1 21.2 184 277-475 6-191 (273)
43 PF07260 ANKH: Progressive ank 98.0 0.0031 6.7E-08 57.3 22.1 160 266-431 7-169 (345)
44 PF13440 Polysacc_synt_3: Poly 97.9 0.0037 8E-08 57.1 22.0 162 294-473 9-171 (251)
45 COG4267 Predicted membrane pro 97.5 0.092 2E-06 49.1 37.4 341 98-465 73-436 (467)
46 PF04505 Dispanin: Interferon- 70.1 30 0.00066 25.1 6.9 42 323-364 32-73 (82)
47 PF05975 EcsB: Bacterial ABC t 66.9 1.3E+02 0.0029 29.4 15.3 63 343-410 89-151 (386)
48 COG4267 Predicted membrane pro 55.9 2E+02 0.0043 27.8 20.6 137 321-474 74-210 (467)
49 COG2211 MelB Na+/melibiose sym 48.2 3E+02 0.0066 27.7 26.6 56 48-104 11-69 (467)
50 PF05975 EcsB: Bacterial ABC t 43.2 3.3E+02 0.0071 26.6 16.4 35 121-155 89-124 (386)
51 PF11683 DUF3278: Protein of u 40.9 1.9E+02 0.004 23.2 14.2 45 34-78 12-56 (129)
52 PF03904 DUF334: Domain of unk 38.6 1.9E+02 0.0042 25.5 7.5 41 119-159 140-180 (230)
53 KOG2468 Dolichol kinase [Lipid 37.8 2.6E+02 0.0057 27.6 9.0 73 276-357 379-451 (510)
54 KOG1330 Sugar transporter/spin 36.0 3.5E+02 0.0075 27.2 9.7 53 63-116 39-91 (493)
55 TIGR00383 corA magnesium Mg(2+ 35.7 1.3E+02 0.0028 28.4 7.0 56 420-477 255-317 (318)
56 PF01102 Glycophorin_A: Glycop 35.0 54 0.0012 25.9 3.4 12 468-479 84-95 (122)
57 PF04235 DUF418: Protein of un 33.1 2.8E+02 0.0062 23.0 15.0 28 343-370 9-36 (163)
58 PRK09546 zntB zinc transporter 33.0 1.6E+02 0.0035 27.9 7.1 24 454-477 300-323 (324)
59 TIGR00765 yihY_not_rbn YihY fa 30.9 4.1E+02 0.0089 24.2 21.7 15 109-123 103-117 (259)
60 PF05313 Pox_P21: Poxvirus P21 28.5 2.7E+02 0.0059 23.6 6.6 40 209-250 121-160 (189)
61 PTZ00370 STEVOR; Provisional 27.8 93 0.002 28.5 4.1 32 449-480 255-289 (296)
62 COG0598 CorA Mg2+ and Co2+ tra 26.3 2E+02 0.0043 27.3 6.4 53 423-477 262-321 (322)
63 PF14184 YrvL: Regulatory prot 23.2 4E+02 0.0087 21.4 13.3 101 130-232 5-106 (132)
64 PRK11663 regulatory protein Uh 22.9 7.4E+02 0.016 24.4 39.9 26 447-472 399-424 (434)
65 PRK09874 drug efflux system pr 22.7 6.9E+02 0.015 24.0 38.7 24 447-470 373-396 (408)
66 PF10160 Tmemb_40: Predicted m 22.7 5.9E+02 0.013 23.2 13.4 101 322-425 89-189 (261)
67 PRK11056 hypothetical protein; 21.5 4E+02 0.0088 20.9 7.3 80 391-479 36-115 (120)
68 TIGR03141 cytochro_ccmD heme e 21.2 1.8E+02 0.004 18.2 3.5 20 453-472 8-27 (45)
69 TIGR01478 STEVOR variant surfa 20.5 1.3E+02 0.0027 27.7 3.5 27 449-475 259-285 (295)
70 PRK11085 magnesium/nickel/coba 20.4 4.4E+02 0.0096 25.0 7.4 24 454-477 292-315 (316)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=8.8e-57 Score=443.37 Aligned_cols=439 Identities=26% Similarity=0.384 Sum_probs=415.5
Q ss_pred cHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhhcccchh
Q 011062 44 DVEEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYR 123 (494)
Q Consensus 44 ~~~~~~~l~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 123 (494)
.++..|+++++++|++++++++.+++.+|+.++||+|++++++.+++.++..++ ..+..|++.|.++.++|++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence 345789999999999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCchHHHH
Q 011062 124 MLGIYMQTSCIISCFFSIIISFL-WFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVF 202 (494)
Q Consensus 124 ~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (494)
++++..++++.+++++++++.++ +.+.++++.+++.++++.+.+.+|+++..++.++..+...+.+.+|+.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999888876 99999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhh-cC-cccchhHHHHHHHHHHHHHHHHHHHHhccc-cccccCCCChHHHHHHHHHHHHHhhH
Q 011062 203 FSALPLAIHFGIAYSLVHW-TS-LGFGGAPLACSISLWISTLSLAIYILCSKK-TGRTWEGFSFESFSVLLTNLKVAMPS 279 (494)
Q Consensus 203 ~~~~~~~~~i~~~~~li~~-~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~~~~~~p~ 279 (494)
.+++..++|++++++|+++ ++ +|+.|+++||++++.+..++..++++++++ ......+..+.+++..|++++.|+|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999998 56 999999999999999999999999987664 22232334345679999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 011062 280 AAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNAMAVTLKLVV 359 (494)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (494)
++++......+...+.+.+++| ++++|+|+++.++.++.+++..+++++.+|.+++++|+||.+++++..+.+..+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 77999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHH
Q 011062 360 LLALIIDLALAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLA 439 (494)
Q Consensus 360 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~ 439 (494)
.++...+++++++++++.++|++|+|+.+.+..++++.++..++++++....++++|.||++.+++.++++.|++.+|+.
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~ 408 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA 408 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhcCchhHHHhhcc
Q 011062 440 LLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRRKWTKMDVAMSS 486 (494)
Q Consensus 440 ~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~k~~~~~~~~~~~~ 486 (494)
++++... +|..|+|++...++.+..+...++++|.+|++....+.+
T Consensus 409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (455)
T COG0534 409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVAAAS 454 (455)
T ss_pred HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccc
Confidence 9998776 899999999999999999999999999999987665543
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=8.2e-54 Score=426.37 Aligned_cols=441 Identities=18% Similarity=0.237 Sum_probs=404.8
Q ss_pred HHhhcccccHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHh
Q 011062 36 WRKWRKVLDVEEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQ 115 (494)
Q Consensus 36 ~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~ 115 (494)
|...++..+-+..|++++.++|.++++++..+.+.+|+.+++++|++++++++++.++..+. ..+..|++++.++.++|
T Consensus 16 ~~~~~~~~~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq 94 (478)
T PRK10189 16 WYAKRKSYRVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAF 94 (478)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 33334445557799999999999999999999999999999999999999999999998888 99999999999999999
Q ss_pred hhcccchhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhC--CChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 011062 116 GFGAKQYRMLGIYMQTSCIISCFFSIIISFL-WFYTEPILILLH--QDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQ 192 (494)
Q Consensus 116 ~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~ 192 (494)
++|++|+|++++..+.++.+++.++++.+++ +.+.++++.++. .|+|+.+.+..|+++..++.++..+...+.+++|
T Consensus 95 ~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr 174 (478)
T PRK10189 95 SLGKRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALR 174 (478)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988877 788899999884 6899999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHhhhc----CcccchhHHHHHHHHHHHHHHHHHHHHhccc--cccccCC-CChHH
Q 011062 193 TQSIVMPLVFFSALPLAIHFGIAYSLVHWT----SLGFGGAPLACSISLWISTLSLAIYILCSKK--TGRTWEG-FSFES 265 (494)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~i~~~~~li~~~----~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~ 265 (494)
+.||++.++..+++..++|+++++++++.. ++|+.|+++|+.+++.+..++..++++++++ .+.++++ +.+.+
T Consensus 175 ~~G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (478)
T PRK10189 175 GAGNTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLN 254 (478)
T ss_pred hcCchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCC
Confidence 999999999999999999999999999853 7899999999999999998887766644322 2222222 12235
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 011062 266 FSVLLTNLKVAMPSAAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTID 345 (494)
Q Consensus 266 ~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (494)
++.+|++++.|+|.+++.........+.+.+++++| ++++|+++++.++.++..++..+++++.+|.++|++|++|.+
T Consensus 255 ~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~ 332 (478)
T PRK10189 255 FAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIA 332 (478)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 688999999999999999999888888888888888 779999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhcCchhhHHH
Q 011062 346 RAKNAMAVTLKLVVLLALIIDLALAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVW 425 (494)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 425 (494)
++|+..+.+.++++.++...+++++++++++.++|++|+|+.+.+..++++.++..++++++....+.++|.||++.+++
T Consensus 333 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~ 412 (478)
T PRK10189 333 QAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMW 412 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhcCchh
Q 011062 426 VNLATFYFIGMPLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRRKWTK 479 (494)
Q Consensus 426 ~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~k~~~~~ 479 (494)
+++.+.|++.+|+.++++...++|..|+|++..+++.+..++.++++++.+|++
T Consensus 413 i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~ 466 (478)
T PRK10189 413 VSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLW 466 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 999999999999999998877899999999999999999999999999999998
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=4.2e-52 Score=414.24 Aligned_cols=431 Identities=23% Similarity=0.302 Sum_probs=395.0
Q ss_pred cccHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhhcccc
Q 011062 42 VLDVEEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQ 121 (494)
Q Consensus 42 ~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~ 121 (494)
.++++..|++++.++|.+++++++.+.+.+|+.+++|+|++++++++++.++..+. ..+..|++++.++.++|++|++|
T Consensus 3 ~~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~ 81 (464)
T PRK00187 3 VPPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGD 81 (464)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCC
Confidence 35678899999999999999999999999999999999999999999999999988 88899999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCchHHH
Q 011062 122 YRMLGIYMQTSCIISCFFSIIISFLWFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLV 201 (494)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (494)
+|++++.++.++.+..+++++..++..+.++++.+++.|+|+.+.+.+|+++..++.++..+...+++++|+.|+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 161 (464)
T PRK00187 82 IEGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVM 161 (464)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999999887775577999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhc----CcccchhHHHHHHHHHHHHHHHHHHHHhccccc-cc-cCCCChHHHHHHHHHHHH
Q 011062 202 FFSALPLAIHFGIAYSLVHWT----SLGFGGAPLACSISLWISTLSLAIYILCSKKTG-RT-WEGFSFESFSVLLTNLKV 275 (494)
Q Consensus 202 ~~~~~~~~~~i~~~~~li~~~----~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~k~~~~~ 275 (494)
+.++++.++|++++++|+++. ++|+.|+++|+.+++....+...++++++++.+ .+ +++..+.+++..|++++.
T Consensus 162 ~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l 241 (464)
T PRK00187 162 VISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRL 241 (464)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHh
Confidence 999999999999999999852 589999999999999888877776665443221 11 112223456789999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011062 276 AMPSAAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNAMAVTL 355 (494)
Q Consensus 276 ~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (494)
++|.++++..+.....+++.+++++| +++++++++++++..+..++..+++++..+.++|++|+||.+++++..+.++
T Consensus 242 g~P~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l 319 (464)
T PRK00187 242 GLPIGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGI 319 (464)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999998 7799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccCC--cH---HHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhcCchhhHHHHHHHH
Q 011062 356 KLVVLLALIIDLALAFGHNIWASFFTD--SR---EIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLAT 430 (494)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 430 (494)
.+++.++++.++++..+++++.++|++ |+ |+.+.+..++++.+++.++++++....+++++.||++.+++.++++
T Consensus 320 ~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~ 399 (464)
T PRK00187 320 GFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLAC 399 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHH
Confidence 999999999999999999999999964 44 6788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhc
Q 011062 431 FYFIGMPLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRR 475 (494)
Q Consensus 431 ~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~k~ 475 (494)
.|++++|+++++.+.+++|+.|+|+++.+++.+..++...+++.+
T Consensus 400 ~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~ 444 (464)
T PRK00187 400 YWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWK 444 (464)
T ss_pred HHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988889999999999999999988877766443
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=9.7e-50 Score=398.90 Aligned_cols=434 Identities=23% Similarity=0.377 Sum_probs=400.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhhcccchhH
Q 011062 45 VEEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYRM 124 (494)
Q Consensus 45 ~~~~~~l~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 124 (494)
++..|++++.++|.+++++...+.+.+|+.+++++|++++++++.+.++.... ..+..|++.+..+.++|++|++|+|+
T Consensus 8 ~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~~~~~ 86 (456)
T PRK01766 8 KSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAGRRER 86 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 46689999999999999999999999999999999999999999999987776 88899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCchHHHHH
Q 011062 125 LGIYMQTSCIISCFFSIIISFL-WFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFF 203 (494)
Q Consensus 125 ~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (494)
.++.++.++.+++++++++.++ +.+.++++.+++.|+++.+.+..|+++.+++.++..+...+++++++.|+++.+++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 166 (456)
T PRK01766 87 IAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVI 166 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 9999999999999999888877 777889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh----cCcccchhHHHHHHHHHHHHHHHHHHHHhccccc--cccCCCChHHHHHHHHHHHHHh
Q 011062 204 SALPLAIHFGIAYSLVHW----TSLGFGGAPLACSISLWISTLSLAIYILCSKKTG--RTWEGFSFESFSVLLTNLKVAM 277 (494)
Q Consensus 204 ~~~~~~~~i~~~~~li~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~k~~~~~~~ 277 (494)
++++.++|+++++++++. +++|+.|+++++.+++++..++..++.+++++.+ +.+.+..+.+++..|++++.++
T Consensus 167 ~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~~ 246 (456)
T PRK01766 167 GFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLGL 246 (456)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHccc
Confidence 999999999999999864 3589999999999999999999888876543321 1122222335678999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011062 278 PSAAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNAMAVTLKL 357 (494)
Q Consensus 278 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (494)
|.+++...+...+.++..+++++| ++++++++++.++.++..++..+++.+.++.++|++|+||.+++|+..+.++++
T Consensus 247 P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~~ 324 (456)
T PRK01766 247 PIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLAV 324 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 999999999998888999999988 678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHH
Q 011062 358 VVLLALIIDLALAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMP 437 (494)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 437 (494)
++.++++.++++..+++++.++|++|+++.+.+..++++..+..++++++....+++++.||++.+++.++++.|++++|
T Consensus 325 ~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~ 404 (456)
T PRK01766 325 GLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGLP 404 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhcCchhHH
Q 011062 438 LALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRRKWTKMD 481 (494)
Q Consensus 438 ~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~k~~~~~~~ 481 (494)
..+++.+.+++|..|+|+++.+++.+..++.++++++.+|+...
T Consensus 405 ~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (456)
T PRK01766 405 LGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQPSA 448 (456)
T ss_pred HHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999888889999999999999999999999998887766543
No 5
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=2.1e-49 Score=391.13 Aligned_cols=424 Identities=18% Similarity=0.141 Sum_probs=374.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhhcccchh
Q 011062 45 VEEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHL-GELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYR 123 (494)
Q Consensus 45 ~~~~~~l~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 123 (494)
.+..|++++.++|.++++++..+.+.+|+.+++|+ |++++++++++.++..+. ..+..+++.+.++.+||++|+||+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 45689999999999999999999999999999997 678999999999999988 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCchHHHH
Q 011062 124 MLGIYMQTSCIISCFFSIIISFL-WFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVF 202 (494)
Q Consensus 124 ~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (494)
++++..++++.+++++++++.++ ..+.++++.+++.|+++.+.+.+|+++..++.++..+...+.+++|+.||++.++.
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999988877 77889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHHHHHHHHhcccccc-ccCCCChHHHHHHHHHHHHHhhHHH
Q 011062 203 FSALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILCSKKTGR-TWEGFSFESFSVLLTNLKVAMPSAA 281 (494)
Q Consensus 203 ~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~~~~~p~~~ 281 (494)
.+++..++|+++++++++.+++|+.|+++|+.+++++..++..++++++++.+. +.+..+...++..|++++.|.|.++
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~ 243 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIML 243 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHH
Confidence 999999999999999999888999999999999999999888777765332221 1111121113468999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 011062 282 MVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNAMAVTLKLVVLL 361 (494)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (494)
++......+.+.+.+++++| ++++|+|+++.++.++.+++..+++++.+|.++|++|+||.+++|+..+.+.+++..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~ 321 (441)
T PRK10367 244 RSLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIV 321 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 6799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhccCCcHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhcC---chhhHHHHHHHHHHHHHHHH
Q 011062 362 ALIIDLALAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCG---WQHLAVWVNLATFYFIGMPL 438 (494)
Q Consensus 362 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g---~~~~~~~~~~~~~~~~~i~~ 438 (494)
+.+.+++++.+++++..+|++|+|+.+.+..++++.++..+..........++++.+ |++.++++++++.|+..++
T Consensus 322 ~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~~- 400 (441)
T PRK10367 322 ALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLLT- 400 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHH-
Confidence 999999999999999999999999999999999998876443334444444455555 5999999999987652221
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhcCchh
Q 011062 439 ALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRRKWTK 479 (494)
Q Consensus 439 ~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~k~~~~~ 479 (494)
.+++|..|+|++..+++.+..++..++++|+ |+|
T Consensus 401 ------~~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~-~~~ 434 (441)
T PRK10367 401 ------LPWLGNHGLWLALTVFLALRGLSLAAIWRRH-WRN 434 (441)
T ss_pred ------HHHcCchHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 1346999999999999999999988877665 754
No 6
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=1.2e-49 Score=396.00 Aligned_cols=426 Identities=16% Similarity=0.173 Sum_probs=389.2
Q ss_pred cHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhhcccch
Q 011062 44 DVEEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGH-LGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQY 122 (494)
Q Consensus 44 ~~~~~~~l~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 122 (494)
+++..|++++.++|.+++++...+++.+|+.++++ +|++++++++++.++..+. ..+..+++.+.++.++|++|++|+
T Consensus 7 ~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~ 85 (453)
T PRK09575 7 NQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDL 85 (453)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCH
Confidence 44678999999999999999999999999999999 5999999999999999888 888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCchHHH
Q 011062 123 RMLGIYMQTSCIISCFFSIIISFL-WFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLV 201 (494)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (494)
|++++.+++++.++.++++++.++ ..+.++++.+++.|+++.+.+.+|+++..++.++..+.....+.+|+.|+++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 999999999999999999988877 8899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHHHHHHHhhHHH
Q 011062 202 FFSALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILCSKKTGRTWEGFSFESFSVLLTNLKVAMPSAA 281 (494)
Q Consensus 202 ~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~ 281 (494)
..++...++|+++++++++.+++|+.|+++|+.+++++..++.+++++++++..+...+..+.+++..|++++.|+|..+
T Consensus 166 ~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~ 245 (453)
T PRK09575 166 GLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFF 245 (453)
T ss_pred HHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHH
Confidence 99999999999999999998889999999999999999999988777554332211111223456789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 011062 282 MVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNAMAVTLKLVVLL 361 (494)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (494)
+.........+.+.+.+++|+ ++++|+++++.++..+..++..+++++.+|.++|++|+||.+++++..+.++++++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~ 324 (453)
T PRK09575 246 MYLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLA 324 (453)
T ss_pred HHHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 999998888888888888873 4589999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhccCC-cHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHH
Q 011062 362 ALIIDLALAFGHNIWASFFTD-SREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLAL 440 (494)
Q Consensus 362 ~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~ 440 (494)
+++.++++..+++++.++|++ |+|+.+.+.+++++.+++.+++++.....+.+++.||++.+++.++.. +++++|+.+
T Consensus 325 ~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip~~~ 403 (453)
T PRK09575 325 GIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGN-MLIQLPFLF 403 (453)
T ss_pred HHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHHHHH
Confidence 999999999999999999995 788999999999999999999999999999999999999999999876 478999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 011062 441 LFGFKLNLYVKGLWIGLVCGLASQACSLFLITLR 474 (494)
Q Consensus 441 ~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~k 474 (494)
+++.. +|+.|+|+++.+++.+..+...++++|
T Consensus 404 ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 404 ILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 98643 699999999999999988887766654
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=4.4e-37 Score=312.35 Aligned_cols=413 Identities=14% Similarity=0.069 Sum_probs=348.8
Q ss_pred HHHhhHHHHHHHHHHHHHhHHHHHHhhc-cChHHH-HHHHHHHHHHHHHHHHHH-HhHHhhHHHHHHhhhcccchhHHHH
Q 011062 51 QVLFSLPMILTNVSYYAIPLVSVMFAGH-LGELQL-AGATLANSWAYVTGFAFT-QGLSGALETLCGQGFGAKQYRMLGI 127 (494)
Q Consensus 51 l~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~-~~~~~~~~i~~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~~~ 127 (494)
+.|.+.-..++++++.+.+++|..+++| +|++++ ++++.+.++...+..... .|++++..+...++.+++ |++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5688889999999999999999999999 999999 899999999877633433 578888777776653322 57777
Q ss_pred HHHHHHHHHHHHHH-HHHHH-HHhhHHHHHHh--CCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCchHHHHH
Q 011062 128 YMQTSCIISCFFSI-IISFL-WFYTEPILILL--HQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFF 203 (494)
Q Consensus 128 ~~~~~~~~~~~~~i-~~~~~-~~~~~~i~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (494)
.+.+++......+. +..++ +++.+++..++ +.+++..+.+.+|+++..++.++..+....++++|+.||++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 77776666665544 44455 77778888877 4466777899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCcccchhH--HHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHHHHHHHhhHHH
Q 011062 204 SALPLAIHFGIAYSLVHWTSLGFGGAP--LACSISLWISTLSLAIYILCSKKTGRTWEGFSFESFSVLLTNLKVAMPSAA 281 (494)
Q Consensus 204 ~~~~~~~~i~~~~~li~~~~~g~~g~~--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~ 281 (494)
+++..++++....++. .++|..|++ +++++++.+..++.+++.++++. + ++...+.+++..|++++++.|..+
T Consensus 160 ~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~k~~l~~~~p~~~ 234 (502)
T TIGR01695 160 PILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGF-L--LKPRFNFRDPGLKRFLKLFLPTTL 234 (502)
T ss_pred HHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-c--ccCcCCCCChhHHHHHHHHHHHHH
Confidence 9998887766544443 378999988 99999999998888777754331 1 111111235678999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 011062 282 MVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYN-FSYGLSAAASTRVSNELGAGTIDRAKNAMAVTLKLVVL 360 (494)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (494)
++....+...++..+.+.++ ++++++|+.+.++.++... +..+++++..|.++++++++|.+++++..+++.++...
T Consensus 235 ~~~~~~~~~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~ 312 (502)
T TIGR01695 235 GSSASQITLLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLL 312 (502)
T ss_pred HHHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999988877766 6689999999999988764 67899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhccCC----cHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhcCchhhHHHHHHHHHHHHHH
Q 011062 361 LALIIDLALAFGHNIWASFFTD----SREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGM 436 (494)
Q Consensus 361 ~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 436 (494)
++.|.++++..+++++.+++.+ |+|.++.+..++++++++.++.+++....+.+++.||++.+++.++... ++++
T Consensus 313 ~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~i~i 391 (502)
T TIGR01695 313 LTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISV-VLNA 391 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHH-HHHH
Confidence 9999999999999999999987 5577889999999999999999999999999999999999999999986 7899
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhc
Q 011062 437 PLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRR 475 (494)
Q Consensus 437 ~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~k~ 475 (494)
++++++ .+.+|..|+|+++.+++.+..++..++.+|+
T Consensus 392 ~l~~~l--~~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 392 LLSLLL--IFPLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHH--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998888 4557999999999999999999888777765
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=6.4e-37 Score=310.15 Aligned_cols=415 Identities=13% Similarity=0.144 Sum_probs=350.5
Q ss_pred HHhhHHHHHHHHHHHHHhHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhhcccchhHHHHHHH
Q 011062 52 VLFSLPMILTNVSYYAIPLVSVMFAGH-LGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYRMLGIYMQ 130 (494)
Q Consensus 52 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~ 130 (494)
.+.+.|.++++++..+.+++|+.+++| +|+|++|+++.+.++..+.......|++++..+.++|+.|++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 467899999999999999999999999 8999999999999999887455567999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhhHHHHHHhCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 011062 131 TSCIISCFFSIIISFL-WFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSALPLA 209 (494)
Q Consensus 131 ~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 209 (494)
+++.+.++.++++.++ +.+.+++...+.++++. ..++++..+..++..+....++.+|+.+|++..+..++++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999999988876 67777777666665543 346788888999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh-----cCcccchhHHHHHHHHHHHHHHHHHHHHhccccc--cccCCCChHHHHHHHHHHHHHhhHHHH
Q 011062 210 IHFGIAYSLVHW-----TSLGFGGAPLACSISLWISTLSLAIYILCSKKTG--RTWEGFSFESFSVLLTNLKVAMPSAAM 282 (494)
Q Consensus 210 ~~i~~~~~li~~-----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~k~~~~~~~p~~~~ 282 (494)
+++.+...++.. .+.++.|+++++.+++.+..+..+++.+++++.+ ..+.+..+.+++..|+++++|+|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 988776655432 2456778889999999999988776665443321 112222234467899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCC----c-hh---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 011062 283 VCLEFWSFEILVFLAGLMP----N-SE---LSTSLI-AMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNAMAV 353 (494)
Q Consensus 283 ~~~~~~~~~~~~~~~~~l~----~-~~---~~~a~~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (494)
++........++.++++.. . .. ...+.| +++.++..+...+..+++++..|.+++++|++|.++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999988886531 1 01 223333 3566777888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhcCchhhHHHHHHHHHHH
Q 011062 354 TLKLVVLLALIIDLALAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYF 433 (494)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 433 (494)
+.+++..++.|.++++..+++++..++.+++ ++.++++++++..++..++....+++++.||+|.+++.++++. +
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGA-I 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH-H
Confidence 9999999999999999999999999998654 3677899999999999999999999999999999999999987 8
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhc
Q 011062 434 IGMPLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRR 475 (494)
Q Consensus 434 ~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~k~ 475 (494)
+++++++.+...+.+|..|+|+++.+++.+..++..+..+|.
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899988888545889999999999999999999998888764
No 9
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=1.5e-36 Score=293.03 Aligned_cols=338 Identities=31% Similarity=0.475 Sum_probs=309.6
Q ss_pred HHHHHHHHHHHHhHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhhcccchhHHHHHHHHHHHHH
Q 011062 57 PMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYRMLGIYMQTSCIIS 136 (494)
Q Consensus 57 p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 136 (494)
|.++++++..+...+|+.+++++|++++|+++++.++..+. ..+..|++++..+.++++.|++|+|+.++..++.+.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999988877 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHhCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHH
Q 011062 137 CFFSIIISFL-WFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSALPLAIHFGIA 215 (494)
Q Consensus 137 ~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 215 (494)
..++++++++ +++.+++..+++.+++..+++..++++..+..++.++.....+.+++.||++..+..++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999998887 888999998888788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh-hcC-cccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 011062 216 YSLVH-WTS-LGFGGAPLACSISLWISTLSLAIYILCSKKTGRTWEGFSFESFSVLLTNLKVAMPSAAMVCLEFWSFEIL 293 (494)
Q Consensus 216 ~~li~-~~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~ 293 (494)
+++++ .++ +|+.|+++++.+++++..++..++.+++++.+.++++..+.+++..|+++++++|..++++...+...++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 98887 556 7899999999999999999888877654443333333333456789999999999999999999999999
Q ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011062 294 VFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNAMAVTLKLVVLLALIIDLALAFGH 373 (494)
Q Consensus 294 ~~~~~~l~~~~~~~a~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (494)
+.+++.+| ++++++|+++.++.++..++..+++++..|.++++++++|.++.++..+++.++.++++.+.++++.+++
T Consensus 240 ~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887 7789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCcHHHHHHHHhhhHHH
Q 011062 374 NIWASFFTDSREIVQEFASMTPFI 397 (494)
Q Consensus 374 ~~i~~l~~~~~~~~~~~~~~l~i~ 397 (494)
+++.++|++|+++.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999989888887764
No 10
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=6e-35 Score=288.68 Aligned_cols=405 Identities=10% Similarity=-0.001 Sum_probs=345.0
Q ss_pred HHHhhHHHHHHHHHHHHHhHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhhcccchhHHHHHH
Q 011062 51 QVLFSLPMILTNVSYYAIPLVSVMFAGH-LGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYRMLGIYM 129 (494)
Q Consensus 51 l~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~ 129 (494)
+.|.+.+...++++..+.+++...+++| +|++++|.++..+++..++......|++++.++.++|+ ++|+|+.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 5688889999999999999999999999 99999999999999998885666899999999999988 67888999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhHHHHHHhCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 011062 130 QTSCIISCFFSIIISFL-WFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSALPL 208 (494)
Q Consensus 130 ~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 208 (494)
++++.+.+..+++++++ +.+.+|+...+.++++. ..+..+..+..++..+.....+.+|+.||++.++...+++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877 88889998877766642 34556666666677788899999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHHHHHHHhhHHHHHHHHHH
Q 011062 209 AIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILCSKKTGRTWEGFSFESFSVLLTNLKVAMPSAAMVCLEFW 288 (494)
Q Consensus 209 ~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~ 288 (494)
++|+.+ .++.+. ..|+.|+++|+.+++.+..+...++++++++.+.+..+. +.+++..|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKP-SWDNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhc-cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999877 444442 249999999999999999888777775544322211122 23567889999999999999999999
Q ss_pred HHHHHHHHHh-cCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 011062 289 SFEILVFLAG-LMPNSELSTSLIAMCVNTQAI-CYNFSYGLSAAASTRVSNELGAGTIDRAKNAMAVTLKLVVLLALIID 366 (494)
Q Consensus 289 ~~~~~~~~~~-~l~~~~~~~a~~~~~~~i~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (494)
....++.+++ .+| ++++|.|+++.|+.+. ...+..+++++..|.++++ +|.++.++..++..+....++.+.+
T Consensus 234 ~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988886 677 7799999999999775 5899999999999999995 6788999999999999999999999
Q ss_pred HHHHHhhhhhhhccCCcHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 011062 367 LALAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKL 446 (494)
Q Consensus 367 ~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 446 (494)
+++.++++++++++.+++ ++++.+++++++.+.++...+...+..+.+.++++.....++.. .++++++++++ .+
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~l--i~ 383 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWL--IP 383 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--HH
Confidence 999999999999999876 67789999999999999998888888888888888888877775 47888999988 67
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 011062 447 NLYVKGLWIGLVCGLASQACSLFLITLR 474 (494)
Q Consensus 447 ~~g~~G~~~a~~~~~~i~~~~~~~~~~k 474 (494)
.+|..|+++++.+++++...+..+...+
T Consensus 384 ~~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 384 LHGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999988766654
No 11
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=9.2e-36 Score=291.16 Aligned_cols=440 Identities=41% Similarity=0.699 Sum_probs=418.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhhcccchhH
Q 011062 45 VEEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYRM 124 (494)
Q Consensus 45 ~~~~~~l~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 124 (494)
..+.|++++++.|.++....+...+.+++.++||+|+.++++.+++.+..+.....+..|+..+..+.++|++|.++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 46689999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCchHHHHHH
Q 011062 125 LGIYMQTSCIISCFFSIIISFLWFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFS 204 (494)
Q Consensus 125 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 204 (494)
...+.+++..+....+++...++.+.++++..++.|+++...+..|.++..+..+.+........++|++++.....+..
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~ 183 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIG 183 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHHHHHHHhhHHHHHH
Q 011062 205 ALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILCSKKTGRTWEGFSFESFSVLLTNLKVAMPSAAMVC 284 (494)
Q Consensus 205 ~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~ 284 (494)
....++++++++++++.+++|..|++++..+++.........+..... ....|..+... ++.++++++.++|.+++..
T Consensus 184 ~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~s~~mic 261 (473)
T KOG1347|consen 184 LVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIPSAVMIC 261 (473)
T ss_pred HHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhcchheeH
Confidence 999999999999999999999999999999999999999998886544 55566666666 8899999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 011062 285 LEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNAMAVTLKLVVLLALI 364 (494)
Q Consensus 285 ~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (494)
++.+.+.+..+..|.+++...+++..++..++....+++..+++.+...++++.+|+++.+++|.....+...++..+..
T Consensus 262 lE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~ 341 (473)
T KOG1347|consen 262 LEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGAS 341 (473)
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999777899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhccCCcHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 011062 365 IDLALAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGF 444 (494)
Q Consensus 365 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~ 444 (494)
.+..+....+.+..+|++|+++.+...+..++++...++++.+....++.++.|++++..++++...++.++|..+.+.+
T Consensus 342 ~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~ 421 (473)
T KOG1347|consen 342 LGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGF 421 (473)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHHHHHHhcCchhHHHhhcc
Q 011062 445 KLNLYVKGLWIGLVCGLASQACSLFLITLRRKWTKMDVAMSS 486 (494)
Q Consensus 445 ~~~~g~~G~~~a~~~~~~i~~~~~~~~~~k~~~~~~~~~~~~ 486 (494)
..++|..|.|.+...+..+..........+.+|++...+..+
T Consensus 422 ~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~a~~ 463 (473)
T KOG1347|consen 422 FTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEKAFA 463 (473)
T ss_pred EEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHHHHH
Confidence 889999999999999988888889999999999998766544
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=6.8e-30 Score=252.65 Aligned_cols=387 Identities=18% Similarity=0.161 Sum_probs=335.8
Q ss_pred cC-hHHHHHHHHHHHHHHHHHHHHH-HhHHhhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHH
Q 011062 79 LG-ELQLAGATLANSWAYVTGFAFT-QGLSGALETLCGQGFGAKQYRMLGIYMQTSCIISCFFSIIISFL-WFYTEPILI 155 (494)
Q Consensus 79 lg-~~~~~~~~~~~~i~~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~ 155 (494)
+| .++..+|.++.++..++...+. .+++++..|..++.. ++++|+.++..++.+.+..++++.++++ ++++++++.
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 4567789999999998844554 568999999999998 8889999999999998888888888877 889999998
Q ss_pred Hh--CCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhhcCcc---cchhH
Q 011062 156 LL--HQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSALPLAIHFGIAYSLVHWTSLG---FGGAP 230 (494)
Q Consensus 156 ~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g---~~g~~ 230 (494)
.+ +.+++..+.+...+++..+..++.++..++.+++++++|+..+....++.++..++...++.. ..| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~--~~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSN--SWGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHH--hcCchHHHHHH
Confidence 87 456788899999999999999999999999999999999999999888888765554444333 456 88899
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHH
Q 011062 231 LACSISLWISTLSLAIYILCSKKTGRTWEGFSFESFSVLLTNLKVAMPSAAMVCLEFWSFEILVFLAGLMPNSELSTSLI 310 (494)
Q Consensus 231 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ 310 (494)
+|..++.++..++.+...++.... .+.+ ++ ...+..|++++...|..+.....++...+++.+.+.++ +.+++++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~-~~~~-~~-~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~--~G~vs~l 236 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFR-FRPK-FD-WRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLG--EGSVSAL 236 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCc-cccc-CC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--ccHHHHH
Confidence 999999999999988888654322 1111 11 12356899999999999999999999999999999988 4489999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCC----cHH
Q 011062 311 AMCVNTQAICY-NFSYGLSAAASTRVSNELGAGTIDRAKNAMAVTLKLVVLLALIIDLALAFGHNIWASFFTD----SRE 385 (494)
Q Consensus 311 ~~~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~ 385 (494)
+.+.++.++.. .+..+++++..|.++++..++|.++.++..++.++....+.+|.++++..++++++++++. |+|
T Consensus 237 ~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~ 316 (451)
T PF03023_consen 237 NYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAE 316 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHH
Confidence 99999999976 5677999999999999999999999999999999999999999999999999999999962 555
Q ss_pred HHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 011062 386 IVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLYVKGLWIGLVCGLASQA 465 (494)
Q Consensus 386 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~ 465 (494)
..+....++.+++++.++.+++......+++.||+|.+++.++++. ++++.+++++ .+.+|..|+++++.++..+..
T Consensus 317 ~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~-~lni~l~~~l--~~~~g~~Glala~sl~~~i~~ 393 (451)
T PF03023_consen 317 DTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISV-VLNIILSILL--VPFFGVAGLALATSLSAIISA 393 (451)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999986 8899999887 667899999999999999999
Q ss_pred HHHHHHHHhcC
Q 011062 466 CSLFLITLRRK 476 (494)
Q Consensus 466 ~~~~~~~~k~~ 476 (494)
++.++.++|+.
T Consensus 394 ~~l~~~l~r~~ 404 (451)
T PF03023_consen 394 LLLYILLRRRL 404 (451)
T ss_pred HHHHHHHHHHc
Confidence 99998887763
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=5.6e-28 Score=234.29 Aligned_cols=420 Identities=15% Similarity=0.088 Sum_probs=352.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHhHHHHHHhhc-cCh-HHHHHHHHHHHHHHHHHHHHH-HhHHhhHHHHHHhhhcccchhHH
Q 011062 49 KDQVLFSLPMILTNVSYYAIPLVSVMFAGH-LGE-LQLAGATLANSWAYVTGFAFT-QGLSGALETLCGQGFGAKQYRML 125 (494)
Q Consensus 49 ~~l~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~-~~~~~~~~~~~i~~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~ 125 (494)
..++|.++-....++++.+.+++...+++. +|. ....++.++.++.+++--.+. .+++++..|...++..++++|+.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 566777777889999999999999999999 997 577799999999998844443 34589999999999877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhCCC---hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCchHHH
Q 011062 126 GIYMQTSCIISCFFSIIISFL-WFYTEPILILLHQD---PNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLV 201 (494)
Q Consensus 126 ~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~---~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (494)
++..+........+.+..+++ .++.+.++.....+ ++....+....++..+..++.++.....+.++..+|+..+.
T Consensus 87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a 166 (518)
T COG0728 87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA 166 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence 777777776777777777777 67777777454322 33333578888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHHHHHHHhhHHH
Q 011062 202 FFSALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILCSKKTGRTWEGFSFESFSVLLTNLKVAMPSAA 281 (494)
Q Consensus 202 ~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~ 281 (494)
+..+..++.-+.....+.........+.+|++.++-+.+.++.+..+++.+...+....+ +.+..|++.+.-.|..+
T Consensus 167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~---~~~~lk~~~~~~~p~~l 243 (518)
T COG0728 167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGF---KDPGLKRFLKLMLPALL 243 (518)
T ss_pred hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCC---CchhHHHHHHHHHHHHH
Confidence 998888877765555555432223668899999999999999999997654322222111 23678999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 011062 282 MVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICY-NFSYGLSAAASTRVSNELGAGTIDRAKNAMAVTLKLVVL 360 (494)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (494)
.....++...+++.+.+.+.+| +++.++.+.+++++.. .+..++++++.|.++++..++|.++.++..+++++.+++
T Consensus 244 ~~sisQi~lli~~~iAS~l~~G--sis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~ll 321 (518)
T COG0728 244 GVSISQINLLIDTAIASFLAEG--SVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLL 321 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhccc--cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999998744 7899999999999976 788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhccCC----cHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhcCchhhHHHHHHHHHHHHHH
Q 011062 361 LALIIDLALAFGHNIWASFFTD----SREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGM 436 (494)
Q Consensus 361 ~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 436 (494)
+++|.++++..++++++++++. +++......+.+..++++.++..+..+....+++.+|+|.|+++.+++. ++++
T Consensus 322 l~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~-~~n~ 400 (518)
T COG0728 322 LTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISL-VVNI 400 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHH-HHHH
Confidence 9999999999999999999953 3444678889999999999999999999999999999999999999986 8899
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 011062 437 PLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRRK 476 (494)
Q Consensus 437 ~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~k~~ 476 (494)
.+++.+ .+.+|..|+++++.++..+.+.+.++.++|+.
T Consensus 401 ~l~~~l--~~~~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 401 LLNLLL--IPPLGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred HHHHHH--HhhccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 998666 66789999999999999999998888887764
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.98 E-value=4.4e-28 Score=245.31 Aligned_cols=398 Identities=12% Similarity=0.094 Sum_probs=322.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhhcccchhHHH
Q 011062 48 AKDQVLFSLPMILTNVSYYAIPLVSVMFAGH-LGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYRMLG 126 (494)
Q Consensus 48 ~~~l~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~ 126 (494)
.++..+.+.+..++++...+.+++...+++| +|+|++|.++.+..+..+.......|++++.. |. +|.+ +
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~---~~~~--~ 74 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR---QDIS--H 74 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc---ccCC--H
Confidence 4678899999999999999999999999999 99999999999999999886777888888653 21 1211 2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCchHHHHHHH
Q 011062 127 IYMQTSCIISCFFSIIISFL-WFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSA 205 (494)
Q Consensus 127 ~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 205 (494)
+..++.+.+....++++.++ +.+.+++...+ ++++. ...+++..+..++..+.....+.+++.++++.....++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFY-HNPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CChhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 33456666777777766666 55555555444 34432 34577777788888888889999999999999998888
Q ss_pred HHHHHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHHHHHHHhhHHHHHHH
Q 011062 206 LPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILCSKKTGRTWEGFSFESFSVLLTNLKVAMPSAAMVCL 285 (494)
Q Consensus 206 ~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~ 285 (494)
...++..++...+.. .++|..+.+++..++..+..+......++ + .+++ ...+++..|++++++.|...+++.
T Consensus 150 ~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~-~~~~----~~~~~~~~k~ll~~~~~~~~~~~~ 222 (492)
T PRK10459 150 SAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRK-I-YRPA----LHFSLASVKPNLSFGAWQTAERII 222 (492)
T ss_pred HHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcc-c-CCcc----ceecHHHHHHHHhhhHHHHHHHHH
Confidence 888877777766655 37899999999999988877655433322 1 1111 112356789999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 011062 286 EFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICY-NFSYGLSAAASTRVSNELGAGTIDRAKNAMAVTLKLVVLLALI 364 (494)
Q Consensus 286 ~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (494)
..+..+.|.++++++. |++++|.|+.+.++.++.. .+...++++..|..++. ++|.++.++.+++..++...+++|
T Consensus 223 ~~~~~~~d~~~lg~~l-g~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p 299 (492)
T PRK10459 223 NYLNTNIDTILIGRIL-GAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFP 299 (492)
T ss_pred HHHHhcCchhhhhHhh-chHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998765 3779999999999988754 45556788999999885 578899999999999999999999
Q ss_pred HHHHHHHhhhhhhhccCCcHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 011062 365 IDLALAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGF 444 (494)
Q Consensus 365 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~ 444 (494)
+++++..++++++.++.+++ +..+...+++++++.++..+.......+++.||+|..++.+++.. ++.+|..+.+
T Consensus 300 ~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~~~~~~-- 374 (492)
T PRK10459 300 LLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKT-FLFIPAIVIG-- 374 (492)
T ss_pred HHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHH--
Confidence 99999999999999998866 788999999999999999999999999999999999999998876 6677776666
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 011062 445 KLNLYVKGLWIGLVCGLASQACSLFLITLR 474 (494)
Q Consensus 445 ~~~~g~~G~~~a~~~~~~i~~~~~~~~~~k 474 (494)
.+.+|..|+++++.+++.+.....++..+|
T Consensus 375 ~~~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 375 GQLAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999998888887744
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.96 E-value=1e-25 Score=227.59 Aligned_cols=392 Identities=16% Similarity=0.180 Sum_probs=312.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhhcccchhH
Q 011062 46 EEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGH-LGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYRM 124 (494)
Q Consensus 46 ~~~~~l~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 124 (494)
...++..|.+.....+++.+.+.+++....++| +|+|++|.++.+.++..++......|++.+..+.++++.+++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~ 82 (480)
T COG2244 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLL 82 (480)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHH
Confidence 346788999999999999999999999999999 9999999999999999999777779999999999998866555555
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCchHHHHH
Q 011062 125 LGIY-MQTSCIISCFFSIIISFLWFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFF 203 (494)
Q Consensus 125 ~~~~-~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (494)
.... ....+......+.+......+..+. ++ .....+++..+..+.........+.+|+.++++.....
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 83 LILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 4444 4444444444444433332222222 12 23445778888999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHHHHHHHhhHHHHH
Q 011062 204 SALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILCSKKTGRTWEGFSFESFSVLLTNLKVAMPSAAMV 283 (494)
Q Consensus 204 ~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~ 283 (494)
.+.+ ..-......+. +.......++...+..........+.+++++...+. ..+..++..|+++++|+|....+
T Consensus 153 ~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~p~~~~~ 226 (480)
T COG2244 153 IVSS-IFLLAAVFALL---FAALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRP--ILRFSLALLKELLRFGLPLLLSS 226 (480)
T ss_pred HHHH-HHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--ccCchhHHHHHHHHHhhHHHHHH
Confidence 4444 11111111221 134556666777777666666665554222211111 11114688999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 011062 284 CLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNAMAVTLKLVVLLAL 363 (494)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (494)
....+..+.|.++++++- +++++|.|+.+.++......+..+++.+..|.+++...++|.++.++..+++.++...++.
T Consensus 227 ~~~~l~~~~D~~~i~~~l-~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (480)
T COG2244 227 LLNFLFTNIDTLLLGLFL-GPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISI 305 (480)
T ss_pred HHHHHHHHHHHHHHHHHh-hhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999775 3789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhccCCcHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHH
Q 011062 364 IIDLALAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFG 443 (494)
Q Consensus 364 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~ 443 (494)
|..+++..+++++..++++++ +..+...++++++..++.++.......+++.|+++..++.+.++. +.++.+++.+
T Consensus 306 p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~l- 381 (480)
T COG2244 306 PALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISA-LLNLILNLLL- 381 (480)
T ss_pred HHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHH-
Confidence 999999999999999999877 555889999999999999999999999999999999999999987 7888888888
Q ss_pred HhcCCCchhHHHHHHH
Q 011062 444 FKLNLYVKGLWIGLVC 459 (494)
Q Consensus 444 ~~~~~g~~G~~~a~~~ 459 (494)
++.+|..|++.++..
T Consensus 382 -i~~~g~~g~~~a~~~ 396 (480)
T COG2244 382 -IPRFGLIGAAIATAS 396 (480)
T ss_pred -HHhhhhhhHHHHHHH
Confidence 677799999999933
No 16
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.90 E-value=2e-21 Score=194.04 Aligned_cols=208 Identities=17% Similarity=0.126 Sum_probs=194.2
Q ss_pred cccHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhhcccc
Q 011062 42 VLDVEEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQ 121 (494)
Q Consensus 42 ~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~ 121 (494)
+.+.+..|++++.++|.+++++++.....+|+.+++++|++++++++++.++..+. ..+..|++++.++.++|++|++|
T Consensus 229 ~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~-~~~~~gi~~a~~~lvgq~~Ga~~ 307 (464)
T PRK00187 229 RPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVA-FMVPVGLSYAVTMRVGQHYGAGR 307 (464)
T ss_pred CCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence 45778899999999999999999999999999999999999999999999999988 99999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhCC--Ch---hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC
Q 011062 122 YRMLGIYMQTSCIISCFFSIIISFL-WFYTEPILILLHQ--DP---NISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQS 195 (494)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~ 195 (494)
+|++++..+.++.++.+.+++..++ +.+.+++.+.+.+ ++ |+.+.+..|+++.+++.++.+++.++.+.+|+.|
T Consensus 308 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G 387 (464)
T PRK00187 308 LLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLK 387 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccC
Confidence 9999999999999999999988877 8889999998853 33 6889999999999999999999999999999999
Q ss_pred CchHHHHHHHHHH-HHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHHHHHHHHh
Q 011062 196 IVMPLVFFSALPL-AIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILC 250 (494)
Q Consensus 196 ~~~~~~~~~~~~~-~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 250 (494)
|++.++..+++.. ++++++++++.+.+++|+.|+++++.+++.+..++....+++
T Consensus 388 ~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 388 DARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 899999999998778999999999999999998888777754
No 17
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.90 E-value=3e-21 Score=191.03 Aligned_cols=210 Identities=22% Similarity=0.270 Sum_probs=200.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 011062 265 SFSVLLTNLKVAMPSAAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTI 344 (494)
Q Consensus 265 ~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (494)
.++..|+++++++|.++.++.......+|+.++++++ ++++|+-++++++..+...+..+++.+..+.++|++|+||+
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~ 89 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDR 89 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCch
Confidence 3568899999999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhcCchhhHH
Q 011062 345 DRAKNAMAVTLKLVVLLALIIDLALAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAV 424 (494)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 424 (494)
+++++..+.++..+++++++..++...+++++..++.+++|+.+.+.+|+++..++.++..++....+++++.||+|.++
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m 169 (455)
T COG0534 90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM 169 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-cC-CCchhHHHHHHHHHHHHHHHHHHHHHhcCc
Q 011062 425 WVNLATFYFIGMPLALLFGFK-LN-LYVKGLWIGLVCGLASQACSLFLITLRRKW 477 (494)
Q Consensus 425 ~~~~~~~~~~~i~~~~~l~~~-~~-~g~~G~~~a~~~~~~i~~~~~~~~~~k~~~ 477 (494)
+.++++. +.|+.+++++.+. .+ +|+.|+++|+.+++.+..++..+++.|+++
T Consensus 170 ~~~~~~~-~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~ 223 (455)
T COG0534 170 YILLLGN-LLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKR 223 (455)
T ss_pred HHHHHHH-HHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 9999987 9999999999877 45 999999999999999999999988877664
No 18
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.89 E-value=8.4e-21 Score=189.60 Aligned_cols=206 Identities=15% Similarity=0.155 Sum_probs=191.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 011062 266 FSVLLTNLKVAMPSAAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTID 345 (494)
Q Consensus 266 ~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (494)
.+..|+++++++|.+++++.......+++.+++++| ++++|+++++.++..+...+..+++++..+.++|++|++|++
T Consensus 25 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~ 102 (478)
T PRK10189 25 VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRR 102 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 356899999999999999999999999999999998 779999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC--CcHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhcCchhhH
Q 011062 346 RAKNAMAVTLKLVVLLALIIDLALAFGHNIWASFFT--DSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLA 423 (494)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 423 (494)
++++..+.++.+++.++++.+++...+++++.+++. .|+|+.+.+.+++++..++.++..+.....+++++.||++.+
T Consensus 103 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~ 182 (478)
T PRK10189 103 RARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIP 182 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHh
Confidence 999999999999999999999999999999999995 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh----cCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 011062 424 VWVNLATFYFIGMPLALLFGFK----LNLYVKGLWIGLVCGLASQACSLFLITLR 474 (494)
Q Consensus 424 ~~~~~~~~~~~~i~~~~~l~~~----~~~g~~G~~~a~~~~~~i~~~~~~~~~~k 474 (494)
+++++++. ++|+++.+++.+. +++|+.|+|+|+.+++.+..++..+++.+
T Consensus 183 ~~i~~~~~-~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~ 236 (478)
T PRK10189 183 LLINGGMN-ILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMI 236 (478)
T ss_pred HHHHHHHH-HHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999864 8899998888653 47899999999999999998877665543
No 19
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.89 E-value=7.7e-21 Score=188.09 Aligned_cols=207 Identities=13% Similarity=0.065 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 011062 266 FSVLLTNLKVAMPSAAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTID 345 (494)
Q Consensus 266 ~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (494)
+++.|+++++++|.+++++.......+|+.++++++ +++++|+.+++.++..+...+..+++.+..+.++|++|+||.+
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~-g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLD-SPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 356789999999999999999999999999999985 2668999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhcCchhhHHH
Q 011062 346 RAKNAMAVTLKLVVLLALIIDLALAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVW 425 (494)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 425 (494)
++++..+.++..+++++++..++...+.+++..++..|+|+.+.+.+|+++..++.++..+......++++.||++.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999999888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 011062 426 VNLATFYFIGMPLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLR 474 (494)
Q Consensus 426 ~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~k 474 (494)
.++++. ++|+++++++.+..++|+.|+++|+.+++.+..++..++++|
T Consensus 164 ~~ii~~-~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 164 LLVVGN-ILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHHH-HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999986 889999999988778999999999999999988887666554
No 20
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.88 E-value=2.2e-20 Score=187.20 Aligned_cols=208 Identities=16% Similarity=0.165 Sum_probs=196.0
Q ss_pred cccHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhhcccc
Q 011062 42 VLDVEEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQ 121 (494)
Q Consensus 42 ~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~ 121 (494)
+.+++..|++++.++|..++.........+++.+++++|++++++++++.++.++. ..+..|++++.++.++|++|+||
T Consensus 232 ~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gl~~a~~~~v~~~~Ga~~ 310 (456)
T PRK01766 232 KPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLL-FMLPLSLAMALTIRVGFELGAGR 310 (456)
T ss_pred CCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCC
Confidence 45778899999999999999999999999999999999999999999999999988 99999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCchHH
Q 011062 122 YRMLGIYMQTSCIISCFFSIIISFL-WFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPL 200 (494)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (494)
++++++..+.++.++..++++..++ +.+.+++..++..|+++.+.+..|+++..+..++.+++....+.+||.||++.+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~ 390 (456)
T PRK01766 311 TLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVI 390 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHH
Confidence 9999999999999999999988876 889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHHHHHHHHh
Q 011062 201 VFFSALPL-AIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILC 250 (494)
Q Consensus 201 ~~~~~~~~-~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 250 (494)
+..+++.. ++++++.+++.+.+++|+.|+++++.+++++..++.++++++
T Consensus 391 ~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
T PRK01766 391 FFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRK 441 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988 689999999887778999999999999999999988887754
No 21
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.88 E-value=1.4e-20 Score=187.78 Aligned_cols=207 Identities=15% Similarity=0.086 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 011062 266 FSVLLTNLKVAMPSAAMVCLEFWSFEILVFLAGLM-PNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTI 344 (494)
Q Consensus 266 ~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~a~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (494)
++..|++++.++|.+++++.......+|+.+++++ | ++++++++++.++..+...+..+++.+..+.++|++|+||+
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g--~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~ 85 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVG--AEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDL 85 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCH
Confidence 45678999999999999999999999999999996 6 77899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhcCchhhHH
Q 011062 345 DRAKNAMAVTLKLVVLLALIIDLALAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAV 424 (494)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 424 (494)
|++++..+.++.++++++++.++++..+++++.+++..|+++.+.+.+++++..++.++..+......++++.||++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhc
Q 011062 425 WVNLATFYFIGMPLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRR 475 (494)
Q Consensus 425 ~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~k~ 475 (494)
+.++.+. ++++++++++.+.+++|+.|+++|+.+++.+..++..++++++
T Consensus 166 ~~~~~~~-~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 166 GLMVIGA-LINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHHH-HHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999986 8899999999877789999999999999999998877766544
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.82 E-value=1.1e-17 Score=170.32 Aligned_cols=206 Identities=17% Similarity=0.149 Sum_probs=187.7
Q ss_pred ccHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhhcccch
Q 011062 43 LDVEEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQY 122 (494)
Q Consensus 43 ~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 122 (494)
.+++..|++++.+.|..++++...+...+|+.+.+++|++++++|+.+.++..+....+..+++++..|.++++.|++|+
T Consensus 217 ~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~ 296 (502)
T TIGR01695 217 FRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNW 296 (502)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 45677899999999999999999999999998865699999999999999998874557889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhCC----ChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCc
Q 011062 123 RMLGIYMQTSCIISCFFSIIISFL-WFYTEPILILLHQ----DPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIV 197 (494)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~ 197 (494)
++.++..+++..+...++++.+++ ..++++++.++.+ +++..+.+..++++.+++.++.++.....+.+++.||+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~ 376 (502)
T TIGR01695 297 NELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDT 376 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCC
Confidence 999999999999999999999887 8899999988755 45678889999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHHHHHHHHh
Q 011062 198 MPLVFFSALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILC 250 (494)
Q Consensus 198 ~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 250 (494)
+.+++.++...+++++++++++. .+|..|+++++.+++.+..++..++.++
T Consensus 377 ~~~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~ 427 (502)
T TIGR01695 377 RTPFINSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNR 427 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876 5799999999999999999988877753
No 23
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.80 E-value=2.5e-16 Score=146.90 Aligned_cols=270 Identities=16% Similarity=0.145 Sum_probs=207.7
Q ss_pred HHhhHHHHHHHHHHHHHhHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhhcccchhHHHHHHH
Q 011062 52 VLFSLPMILTNVSYYAIPLVSVMFAGH-LGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYRMLGIYMQ 130 (494)
Q Consensus 52 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~ 130 (494)
.|.+.....++++..+.+++...++.| +|+|++|.++...++..++......|++++..+.+++... |+++.+.+..
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~--~~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKD--KKELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh--hHHHHHHHHH
Confidence 577888899999999999999999999 9999999999999999988566699999999998888743 2344455555
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q 011062 131 TSCIISCFFSIIISFLWFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSALPLAI 210 (494)
Q Consensus 131 ~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 210 (494)
.......+.+++......+.. .+..+ +.. ..+........++.........++++.++.+.....++...+.
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~~----~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIAS----FFGNP-SLS---LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL 151 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HcCCc-hHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444444443333322212 33333 221 1222222222256778888999999999999999999999988
Q ss_pred HHHHHHHHhhhcCcccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 011062 211 HFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILCSKKTGRTWEGFSFESFSVLLTNLKVAMPSAAMVCLEFWSF 290 (494)
Q Consensus 211 ~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~ 290 (494)
..++...++.. +.+..+..++..++..+..++...+.+++.+ .+....+++..|++++++.|..++++......
T Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (273)
T PF01943_consen 152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR-----PRFSFFSKKFFKEILRFGLPLFLSSLLSWLYS 225 (273)
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----ccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777666663 4458899999999999998888888865442 11222236789999999999999999999999
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011062 291 EILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNE 338 (494)
Q Consensus 291 ~~~~~~~~~l~~~~~~~a~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 338 (494)
..|.++++++. |++++|.|+++.++......+..++.++..|.+++.
T Consensus 226 ~~d~~ii~~~~-g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 226 QIDRLIIGYFL-GPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HhHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999876 388999999999999999999999999999999875
No 24
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.79 E-value=7.3e-17 Score=155.73 Aligned_cols=194 Identities=18% Similarity=0.207 Sum_probs=178.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011062 278 PSAAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNAMAVTLKL 357 (494)
Q Consensus 278 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (494)
|.+++++...+...+++.+++++| ++++++|+++.++..+...+..+++++..|.+++++|++|.+++++..+....+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 678889999999999999999998 678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHH
Q 011062 358 VVLLALIIDLALAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMP 437 (494)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 437 (494)
.+.++++.++++..+++++.+++..|++..+.+.+++++++++.++.++......++++.||++.+++.++++. +++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999877888899999999999999999999999999999999999999999986 77888
Q ss_pred HHHHHHH-hcC-CCchhHHHHHHHHHHHHHHHHHHHHHh
Q 011062 438 LALLFGF-KLN-LYVKGLWIGLVCGLASQACSLFLITLR 474 (494)
Q Consensus 438 ~~~~l~~-~~~-~g~~G~~~a~~~~~~i~~~~~~~~~~k 474 (494)
+.+++.. ..+ +|..|+++++.+++.+..++..++.+|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8887765 445 679999999999999999988777665
No 25
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.75 E-value=2.1e-18 Score=147.34 Aligned_cols=162 Identities=25% Similarity=0.445 Sum_probs=157.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011062 278 PSAAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNAMAVTLKL 357 (494)
Q Consensus 278 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (494)
|.+++++.....+.+++.+++++| ++++++++++.++.++..++..+++++..+.++|++|++|++++++..++++.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 888999999999999999999997 779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHH
Q 011062 358 VVLLALIIDLALAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMP 437 (494)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 437 (494)
+..++++.++++..+++++.+++.+|+|+.+.+.+++++..+..++.++.....+++++.||++.+++.++.+.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 011062 438 LALL 441 (494)
Q Consensus 438 ~~~~ 441 (494)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9874
No 26
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.75 E-value=3.2e-15 Score=148.30 Aligned_cols=208 Identities=18% Similarity=0.149 Sum_probs=193.1
Q ss_pred ccHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhhcccch
Q 011062 43 LDVEEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQY 122 (494)
Q Consensus 43 ~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 122 (494)
.+.+..|++++...|..++....++...+|+.+.+++++.++++++.+.++.+++...+..++++...|.+++...++|.
T Consensus 192 ~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~ 271 (451)
T PF03023_consen 192 WRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDW 271 (451)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 34567899999999999999999999999999999999999999999999999997788999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhC----CChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCc
Q 011062 123 RMLGIYMQTSCIISCFFSIIISFL-WFYTEPILILLH----QDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIV 197 (494)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~ 197 (494)
++.++.+++++.....+.++.++. ..+++|++..+. .+++..+.....+++.+++.++.++...+...+.+.+|+
T Consensus 272 ~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~ 351 (451)
T PF03023_consen 272 EEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDT 351 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCc
Confidence 999999999999999999999987 899999998763 356667888999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHHHHHHHHhcc
Q 011062 198 MPLVFFSALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILCSK 252 (494)
Q Consensus 198 ~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~ 252 (494)
|.++..++++.++|++++.++.. .+|..|.++++.++..+..++.+..++|+.
T Consensus 352 ~~~~~~~~~~~~lni~l~~~l~~--~~g~~Glala~sl~~~i~~~~l~~~l~r~~ 404 (451)
T PF03023_consen 352 KTPVRISVISVVLNIILSILLVP--FFGVAGLALATSLSAIISALLLYILLRRRL 404 (451)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999988887 689999999999999999999998886443
No 27
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.74 E-value=5.1e-16 Score=157.48 Aligned_cols=203 Identities=16% Similarity=0.136 Sum_probs=176.3
Q ss_pred ccHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHhhc-cCh---------HHHHHH-HHHHHHHHHHHHHHHHhHHhhHHH
Q 011062 43 LDVEEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGH-LGE---------LQLAGA-TLANSWAYVTGFAFTQGLSGALET 111 (494)
Q Consensus 43 ~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~---------~~~~~~-~~~~~i~~~~~~~~~~gl~~~~~~ 111 (494)
.+++..|++++++.|..++++...+...+|+.++++ +++ +.+|.+ +.+.++..+. .....+++++..|
T Consensus 219 ~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p 297 (488)
T TIGR02900 219 EGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVP 297 (488)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHH
Confidence 346688999999999999999999999999999987 432 223333 3556677777 7888999999999
Q ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 011062 112 LCGQGFGAKQYRMLGIYMQTSCIISCFFSIIISFL-WFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRF 190 (494)
Q Consensus 112 ~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~ 190 (494)
.++++.|++|+|+.++..++...+...++++..+. ..++++++.++.+++ ++.+++++.++..++..+.....+.
T Consensus 298 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~ 373 (488)
T TIGR02900 298 DISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSI 373 (488)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988876 888999998876544 3567899999999999999999999
Q ss_pred HhhcCCchHHHHHHHHHHHHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHHHHHHHHh
Q 011062 191 LQTQSIVMPLVFFSALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILC 250 (494)
Q Consensus 191 l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 250 (494)
+++.||++..++.+++..++|++++++++..+.+|+.|+++++.+++++..++..++.++
T Consensus 374 l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 374 LQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998874347899999999999999999998888863
No 28
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.73 E-value=3.7e-18 Score=145.80 Aligned_cols=160 Identities=24% Similarity=0.390 Sum_probs=154.8
Q ss_pred HHHHHHHHHHHHhHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhhcccchhHHHHHHHHHHHHH
Q 011062 57 PMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYRMLGIYMQTSCIIS 136 (494)
Q Consensus 57 p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 136 (494)
|.++++++..+...+|+.+++++|++++++++++.++..+. ..+..|+++|..+.++|++|++|+|++++..+.++.++
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 88999999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHhCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH-HHHHHH
Q 011062 137 CFFSIIISFL-WFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSALPL-AIHFGI 214 (494)
Q Consensus 137 ~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~~ 214 (494)
..+++++.++ ..+.+++..+++.|+++.+.+.+|+++..+..++..+.....+++++.||++..+..++++. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999988 88999999999999999999999999999999999999999999999999999999999999 999998
Q ss_pred HHH
Q 011062 215 AYS 217 (494)
Q Consensus 215 ~~~ 217 (494)
+++
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 29
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.72 E-value=6.7e-14 Score=136.68 Aligned_cols=210 Identities=16% Similarity=0.129 Sum_probs=192.2
Q ss_pred ccccHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhhccc
Q 011062 41 KVLDVEEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAK 120 (494)
Q Consensus 41 ~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~ 120 (494)
...+.+..|++.+...|..++...+++..++|+.+.+.+.+...+.+..+..+.++..-.+..++++...|.+||+..++
T Consensus 224 ~~~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~ 303 (518)
T COG0728 224 FGFKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANG 303 (518)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 33455789999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhC----CChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC
Q 011062 121 QYRMLGIYMQTSCIISCFFSIIISFL-WFYTEPILILLH----QDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQS 195 (494)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~ 195 (494)
|.++.++..+.++.++++++++.++. ..+++|+...+. .+++........++...++.++..+..++...+.+.+
T Consensus 304 ~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~ 383 (518)
T COG0728 304 DWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYARE 383 (518)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999987 899999998663 2455667788889999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHHHHHHHHhcc
Q 011062 196 IVMPLVFFSALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILCSK 252 (494)
Q Consensus 196 ~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~ 252 (494)
|+|.++.+.+++.++|+.+++.+.. .+|..|.++++.++.++++.+.++..+++.
T Consensus 384 d~ktP~~i~ii~~~~n~~l~~~l~~--~~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 384 DTKTPMKIAIISLVVNILLNLLLIP--PLGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred CCCcChHHHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999977766 578889999999999999999988886544
No 30
>PRK15099 O-antigen translocase; Provisional
Probab=99.71 E-value=5.1e-15 Score=146.59 Aligned_cols=203 Identities=13% Similarity=-0.017 Sum_probs=175.9
Q ss_pred cccccHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhhc
Q 011062 40 RKVLDVEEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGH-LGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFG 118 (494)
Q Consensus 40 ~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g 118 (494)
+.+++++..|++++++.|..+++....+...+|+.++++ +|++++|.|+.+.++.+.+...+..+++++..|.+++.
T Consensus 206 ~~~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~-- 283 (416)
T PRK15099 206 KPSWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL-- 283 (416)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 345678889999999999999999999999999999985 99999999999999988544889999999999999995
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCc
Q 011062 119 AKQYRMLGIYMQTSCIISCFFSIIISFL-WFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIV 197 (494)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~ 197 (494)
+|+|+.++..++.......++++..++ ++++++++.++.+++ .+++.+++++.+++.++......+...+-..++.
T Consensus 284 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~ 360 (416)
T PRK15099 284 -TEKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASL 360 (416)
T ss_pred -CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888999999988888888876 789999999887765 3346778889888888887777777667788888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHHHHHHHH
Q 011062 198 MPLVFFSALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYIL 249 (494)
Q Consensus 198 ~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~ 249 (494)
+......+...++++++++++++ .+|..|+++++.+++.+..++..+...
T Consensus 361 ~~~~~~~~~~~~l~i~l~~~li~--~~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 361 RFYILAEVSQFTLLTGFAHWLIP--LHGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888899999999987 589999999999999999988886664
No 31
>PRK10459 colanic acid exporter; Provisional
Probab=99.69 E-value=1.2e-13 Score=140.14 Aligned_cols=201 Identities=11% Similarity=0.040 Sum_probs=176.5
Q ss_pred ccHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhhcccc
Q 011062 43 LDVEEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGH-LGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQ 121 (494)
Q Consensus 43 ~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~ 121 (494)
.+.+..|++++++.|...+++...+...+|+.++++ +|++++|.|+.+.++.+.+...+...+++...|.+++. ++|
T Consensus 201 ~~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~ 278 (492)
T PRK10459 201 FSLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDD 278 (492)
T ss_pred ecHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCC
Confidence 456778999999999999999999999999999999 89999999999999998874566666788888999886 678
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCchHH
Q 011062 122 YRMLGIYMQTSCIISCFFSIIISFL-WFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPL 200 (494)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (494)
+++.++.+++.+.+...+++++.+. ..+++|++..+.+++ ...+...++++++...+..........+++.||+|..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~ 356 (492)
T PRK10459 279 TEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLS 356 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchh
Confidence 8889999999999999999998876 888999998876654 5677899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHHHHHHHH
Q 011062 201 VFFSALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYIL 249 (494)
Q Consensus 201 ~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~ 249 (494)
+..+++..+++++..+++.. .+|+.|+++++.+++.+...+..++..
T Consensus 357 ~~~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~ 403 (492)
T PRK10459 357 FKWNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMI 403 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888877766665 579999999999999999888887774
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.65 E-value=7.7e-13 Score=121.68 Aligned_cols=246 Identities=16% Similarity=0.163 Sum_probs=180.6
Q ss_pred HHhHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 011062 67 AIPLVSVMFAGH-LGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYRMLGIYMQTSCIISCFFSIIISF 145 (494)
Q Consensus 67 ~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~ 145 (494)
..+++...+++| +|+|++|.++....+..+.......|+++.... ..++|+++.++..+..+....+.+++..+
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAI 76 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888999 999999999999999998855567777777554 22455666677766666555554444433
Q ss_pred HHHhhHHHHHHhCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhhcCcc
Q 011062 146 LWFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSALPLAIHFGIAYSLVHWTSLG 225 (494)
Q Consensus 146 ~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g 225 (494)
+.. .+...+ .+++. ..++....+..++........+.+++.+|.+.....++...+........+.+ .+.+
T Consensus 77 ~~~---~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 147 (251)
T PF13440_consen 77 LAI---LIAYFF-GDPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLN 147 (251)
T ss_pred HHH---HHHHHh-CChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Confidence 311 111222 33322 33455667778888899999999999999999999999998887555544444 2448
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc-CCchh
Q 011062 226 FGGAPLACSISLWISTLSLAIYILCSKKTGRTWEGFSFESFSVLLTNLKVAMPSAAMVCLEFWSFEILVFLAGL-MPNSE 304 (494)
Q Consensus 226 ~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-l~~~~ 304 (494)
..+..++..++.++..++.+...+++ .+ .. + +.+..| .++.+.|..+.++......+.+.++++. ++ .
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~--~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~--~ 216 (251)
T PF13440_consen 148 LWSILLAFIISALLALLISFYLLRRK--LR--LS--F--KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFLG--P 216 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc--cC--CC--c--hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--H
Confidence 88889998898888877766644311 11 11 1 122334 7999999999999999999999999998 54 8
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 011062 305 LSTSLIAMCVNTQAICY-NFSYGLSAAASTRVSN 337 (494)
Q Consensus 305 ~~~a~~~~~~~i~~l~~-~~~~~~~~~~~~~~~~ 337 (494)
+++|.|+++.++..... .+..++++...|.++|
T Consensus 217 ~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 217 EAVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 89999999999999888 9999999999999886
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.60 E-value=4.1e-13 Score=135.83 Aligned_cols=186 Identities=17% Similarity=0.238 Sum_probs=172.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhhcccchh
Q 011062 45 VEEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGH-LGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYR 123 (494)
Q Consensus 45 ~~~~~~l~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 123 (494)
.+..|+++++++|..+.++...+.+.+|+.++++ +|++++|.|+.+..+.... ..+...++....|.+++...++|.+
T Consensus 209 ~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~~ 287 (480)
T COG2244 209 LALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDRK 287 (480)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 6789999999999999999999999999999999 9999999999888888888 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCchHHHH
Q 011062 124 MLGIYMQTSCIISCFFSIIISFL-WFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVF 202 (494)
Q Consensus 124 ~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (494)
+.++..++.+.+...++++..+. ..+++|++..+.+++.. .+...+++.++..++..+.......+++.|+.+....
T Consensus 288 ~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 365 (480)
T COG2244 288 ALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLL 365 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHH
Confidence 99999999999999999999987 88999999887766532 3678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcccchhHHHHHHH
Q 011062 203 FSALPLAIHFGIAYSLVHWTSLGFGGAPLACSIS 236 (494)
Q Consensus 203 ~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~ 236 (494)
.+.++.++|.+++++++. .+|..|++.++ .+
T Consensus 366 ~~~~~~i~~~~l~~~li~--~~g~~g~~~a~-~~ 396 (480)
T COG2244 366 ISLISALLNLILNLLLIP--RFGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHhHHHH--hhhhhhHHHHH-HH
Confidence 999999999999999997 67999999999 44
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.38 E-value=2.9e-09 Score=106.56 Aligned_cols=421 Identities=13% Similarity=0.003 Sum_probs=254.5
Q ss_pred HhhHHHHHHHHHHHHHhHHHHHHhhc-cChHHHHHHHHHHHHH-HHHHHHHHHhHHhhHHHHHHhhhcccchhHHHHHHH
Q 011062 53 LFSLPMILTNVSYYAIPLVSVMFAGH-LGELQLAGATLANSWA-YVTGFAFTQGLSGALETLCGQGFGAKQYRMLGIYMQ 130 (494)
Q Consensus 53 ~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~-~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~ 130 (494)
+.+-..++.+++..+.+++-+.++-| ++++.+|..++=..+. +-+....--++-.+..+.-.+...++|.++..+..+
T Consensus 5 ~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~w 84 (549)
T PF04506_consen 5 KGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLLW 84 (549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhccc
Confidence 44556778888888888888777777 9999999885544433 222255566676665554333211223334444444
Q ss_pred HHHHHHHHHHHHHHHHHH--hhHHH----HHHhCCC-hh---HHHHHHHHHHHHhhHHHHHH----HHHHHHHHHhhcCC
Q 011062 131 TSCIISCFFSIIISFLWF--YTEPI----LILLHQD-PN---ISEQAGLYMKYLIPGLFAFG----FLQNFLRFLQTQSI 196 (494)
Q Consensus 131 ~~~~~~~~~~i~~~~~~~--~~~~i----~~~~~~~-~~---~~~~~~~~l~i~~~~~~~~~----~~~~~~~~l~~~~~ 196 (494)
....+..+++.+++.+.+ ...|. ..+...+ ++ ..+.....+.+...+.+.-. +....+..+.-.-|
T Consensus 85 ls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~R 164 (549)
T PF04506_consen 85 LSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKLR 164 (549)
T ss_pred ccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhee
Confidence 434444444443332211 11111 1111111 11 11112222223333333322 33344445555555
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhc-Cccc-----ch-hHHHHHHHHHHHHHHHHHHHHhccccc-----cccCCCCh-
Q 011062 197 VMPLVFFSALPLAIHFGIAYSLVHWT-SLGF-----GG-APLACSISLWISTLSLAIYILCSKKTG-----RTWEGFSF- 263 (494)
Q Consensus 197 ~~~~~~~~~~~~~~~i~~~~~li~~~-~~g~-----~g-~~~a~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~- 263 (494)
.+.-........+++..+........ +++. .+ +.++..+++....+............. ...++...
T Consensus 165 v~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~~ 244 (549)
T PF04506_consen 165 VKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISSG 244 (549)
T ss_pred eEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhcccccccc
Confidence 65555555555555555444432210 1111 11 233444455444433222111111111 11111111
Q ss_pred --HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 011062 264 --ESFSVLLTNLKVAMPSAAMVCLEFWSFEILVFLAGL--MPNSELSTSLIAMCVNTQAIC-YNFSYGLSAAASTRVSNE 338 (494)
Q Consensus 264 --~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~a~~~~~~~i~~l~-~~~~~~~~~~~~~~~~~~ 338 (494)
.....-+++++.......+++.-.+....+.+++.. +.+ .++.|.|++++++.+++ -.+...+..+.....++.
T Consensus 245 ~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~ 323 (549)
T PF04506_consen 245 NPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKL 323 (549)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 011134788899999999999999998999988888 664 77899999999999985 577888999998888888
Q ss_pred hcCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHhhhHHHHHHHHHHhHHHH
Q 011062 339 LGAGTI---------DRAKNAMAVTLKLVVLLALIIDLALAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAI 409 (494)
Q Consensus 339 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~ 409 (494)
..+++. +++.+.....++....+++.+..+....++.+.+++.+++-....+...+++++...++.+++++
T Consensus 324 l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi 403 (549)
T PF04506_consen 324 LSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGI 403 (549)
T ss_pred hcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccH
Confidence 865432 44666777788888888877777777888888888876553344578899999999999999999
Q ss_pred HHHHHhhcCchhhHHHHHHHHH--HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhc
Q 011062 410 LSGVARGCGWQHLAVWVNLATF--YFIGMPLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRR 475 (494)
Q Consensus 410 ~~~~l~~~g~~~~~~~~~~~~~--~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~k~ 475 (494)
.....++...++.....+-... -++.+..++++... ++|..|..+|..+.+.++.+.+..+.+|.
T Consensus 404 ~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 404 TEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999887766444333221 14455667777554 78999999999999999999998887664
No 35
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.27 E-value=6.2e-10 Score=109.87 Aligned_cols=207 Identities=15% Similarity=0.139 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCh
Q 011062 266 FSVLLTNLKVAMPSAAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAI-CYNFSYGLSAAASTRVSNELGAGTI 344 (494)
Q Consensus 266 ~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~l-~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (494)
..+.|++.+++.|..+....+.....+...+.+++| +.+.++.++++...+. -+.+..++..+..|..+|++|.+++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 578899999999999999999999999999999999 5589999988887766 5678889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhcCchhhHH
Q 011062 345 DRAKNAMAVTLKLVVLLALIIDLALAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAV 424 (494)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 424 (494)
+.......++.........|.+... .+.+++...+.+|+++...+..+.++.....+.+.........+++.+++....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l~-~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLLI-LNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHH-HccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 9999999999998888888877554 567999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 011062 425 WVNLATFYFIGMPLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRRK 476 (494)
Q Consensus 425 ~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~k~~ 476 (494)
++..... ++++++++++.+.+++|..|+..+..+++.+.......+.....
T Consensus 181 ~~~~~~~-~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~ 231 (473)
T KOG1347|consen 181 VIGLVAL-VLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG 231 (473)
T ss_pred HHHHHHH-HHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC
Confidence 9999986 99999999999999999999999999999999998877665443
No 36
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=8.8e-08 Score=89.68 Aligned_cols=417 Identities=11% Similarity=-0.025 Sum_probs=232.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHHHHHhhc-cChHHHHHHHHHHHHHHHH-HHHHHHhHHhhHHHHHHhhhcccc---
Q 011062 47 EAKDQVLFSLPMILTNVSYYAIPLVSVMFAGH-LGELQLAGATLANSWAYVT-GFAFTQGLSGALETLCGQGFGAKQ--- 121 (494)
Q Consensus 47 ~~~~l~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~-~~~~~~gl~~~~~~~~s~~~g~~~--- 121 (494)
...+..+.+.-.+..+++..+..+..+.++-| ++++.+|..++-..+.+-. ....--++.-+ ....|.++
T Consensus 6 vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A-----~l~~gs~~~d~ 80 (530)
T KOG2864|consen 6 VLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLA-----ELRIGSEPADT 80 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHH-----hccCCCCCCcc
Confidence 34555666666777787777777776666656 9999999987765554422 12223333333 33333333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCchHHH
Q 011062 122 YRMLGIYMQTSCIISCFFSIIISFLWFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLV 201 (494)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (494)
.++..+..+.+-.+...+.+.+.-+++-...........| .-..-..+...+.+.--+...+.-..|..-+.+.-.
T Consensus 81 ~te~~n~~wlS~~L~~~i~~~~i~~wl~~~~s~d~i~~~p----~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~ 156 (530)
T KOG2864|consen 81 WTEFINLLWLSVPLQTAINVACIYFWLGFLSSSDEISYSP----LYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRA 156 (530)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhccchhhcCc----hHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3455666666666666655555433221111111000011 111111222222222222222222233333333444
Q ss_pred HHHHHHHHHHHHHHH-HHhhhc-CcccchhHHHHHHHHHHHHHHHHHHHHhccccccc----------cCC--CChHHHH
Q 011062 202 FFSALPLAIHFGIAY-SLVHWT-SLGFGGAPLACSISLWISTLSLAIYILCSKKTGRT----------WEG--FSFESFS 267 (494)
Q Consensus 202 ~~~~~~~~~~i~~~~-~li~~~-~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~----------~~~--~~~~~~~ 267 (494)
...-+..+++-.+.+ .++.+. ++++..-++|.....+.-.+..++++.+.++..+. .++ .+.....
T Consensus 157 i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~f 236 (530)
T KOG2864|consen 157 IAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIF 236 (530)
T ss_pred HHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCcccc
Confidence 444444444422222 222222 34555566666665555555333333333331100 000 0000011
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChH
Q 011062 268 VLLTNLKVAMPSAAMVCLEFWSFEILVFLAGLMPN-SELSTSLIAMCVNTQAIC-YNFSYGLSAAASTRVSNELGAGTID 345 (494)
Q Consensus 268 ~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~a~~~~~~~i~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (494)
.-++..+.-.....+.+.-.+....+.+++..... .-.+.|.|.++++..++. -++...+........++...+++.|
T Consensus 237 fd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe 316 (530)
T KOG2864|consen 237 FDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQE 316 (530)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchh
Confidence 22445555555556666666666656666652110 133678999999998884 5788899999999999988887777
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhcCchhh
Q 011062 346 RAKNAM---AVTLKLVVLLALIIDLALAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHL 422 (494)
Q Consensus 346 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 422 (494)
+.|+.. ...++....+++....+....++.+..++.+++-.-..+...++++++..++.+++++......+.+..+.
T Consensus 317 ~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~q 396 (530)
T KOG2864|consen 317 NVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQ 396 (530)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHH
Confidence 766654 44455555555555555555666788877665433344668899999999999999999999999877665
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhc
Q 011062 423 AVW---VNLATFYFIGMPLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRR 475 (494)
Q Consensus 423 ~~~---~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~k~ 475 (494)
... ..++.. ++.+.+++++.. .+|..|.-+|-.+.+.++-+....+.++.
T Consensus 397 i~~~n~~mlafS-viflilsylL~~--~~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 397 IDKHNKFMLAFS-VIFLILSYLLIR--WFGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred HHhcccchhHHH-HHHHHHHHHHHH--HhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 233333 455677888844 46889999999999988888776666554
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=99.09 E-value=5.2e-07 Score=81.05 Aligned_cols=267 Identities=11% Similarity=0.001 Sum_probs=168.7
Q ss_pred cHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHhhccC---hHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhhccc
Q 011062 44 DVEEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGHLG---ELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAK 120 (494)
Q Consensus 44 ~~~~~~~l~~~~~p~~~~~~~~~~~~~i~~~~i~~lg---~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~ 120 (494)
....++++.++-.|..+++....+...+.+.-++|-. .|.+++|+++.++.-++ ..+...+.+....++ ++
T Consensus 6 ~~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~V-----~s 79 (345)
T PF07260_consen 6 SLTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVFV-----NS 79 (345)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHHh-----cc
Confidence 3456899999999999999999999999999998732 35699999999998888 777777776655554 33
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH-H-HhhHHHHH-HhCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCc
Q 011062 121 QYRMLGIYMQTSCIISCFFSIIISFL-W-FYTEPILI-LLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIV 197 (494)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~i~~~~~-~-~~~~~i~~-~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~ 197 (494)
++++- +........+.+.+....++ + .+...++. .++.++++.+.++..+.++.+..++.++...+++++.-.+++
T Consensus 80 ~rsrr-~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s 158 (345)
T PF07260_consen 80 KRSRR-KAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHS 158 (345)
T ss_pred hhhhH-HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccce
Confidence 33322 22222222222222222222 2 33444443 557899999999999999999999999999999988867777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCcccchhH---HHHHHHHHHHHH-HHHHHHHhccccccccCCCChHHHHHHHHHH
Q 011062 198 MPLVFFSALPLAIHFGIAYSLVHWTSLGFGGAP---LACSISLWISTL-SLAIYILCSKKTGRTWEGFSFESFSVLLTNL 273 (494)
Q Consensus 198 ~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~~---~a~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 273 (494)
......++...+..+++..+++...--...... .+...+..+.+- +.+-++..-....+........+...+++++
T Consensus 159 ~iV~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l 238 (345)
T PF07260_consen 159 WIVGSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRML 238 (345)
T ss_pred eEeehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHH
Confidence 766666666666666655556532111111222 222222222211 1122221111112222222222346789999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhc-CCch---hHHHHHHHHHHHHH
Q 011062 274 KVAMPSAAMVCLEFWSFEILVFLAGL-MPNS---ELSTSLIAMCVNTQ 317 (494)
Q Consensus 274 ~~~~p~~~~~~~~~~~~~~~~~~~~~-l~~~---~~~~a~~~~~~~i~ 317 (494)
++.+|.+........+-.+.+.+++| ++.+ +++++...+.+.+.
T Consensus 239 ~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvg 286 (345)
T PF07260_consen 239 KFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVG 286 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCC
Confidence 99999999999999998889999988 5532 24566555444443
No 38
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.46 E-value=3.8e-05 Score=77.37 Aligned_cols=202 Identities=12% Similarity=0.086 Sum_probs=164.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHhHHHHHHhhc--c-ChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhhcccch---
Q 011062 49 KDQVLFSLPMILTNVSYYAIPLVSVMFAGH--L-GELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQY--- 122 (494)
Q Consensus 49 ~~l~~~~~p~~~~~~~~~~~~~i~~~~i~~--l-g~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~--- 122 (494)
++..+.......+.++-.+.+--|..++.. + ..++-|.|+++.++.+++.-.+...+..+.-...+|...+++.
T Consensus 253 ~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~~ 332 (549)
T PF04506_consen 253 RDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKKK 332 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchhh
Confidence 677888888889999999999999999998 4 5889999999999999988888899999988889988765433
Q ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC
Q 011062 123 ------RMLGIYMQTSCIISCFFSIIISFL-WFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQS 195 (494)
Q Consensus 123 ------~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~ 195 (494)
++..+.+...+.+...+++++..+ -..++.++.++.++....+.+...++..+...|+.+++.+..++.++..
T Consensus 333 ~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a 412 (549)
T PF04506_consen 333 QPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVA 412 (549)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhC
Confidence 345667777888888888777776 7777888888766554455567889999999999999999999999887
Q ss_pred CchHHHHHH---HHHHHHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHHHHHHHHhc
Q 011062 196 IVMPLVFFS---ALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILCS 251 (494)
Q Consensus 196 ~~~~~~~~~---~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 251 (494)
..+.....+ ++..++-+..+++++.. ++|..|..+|.++...+..+..+.+.++.
T Consensus 413 ~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 413 SESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 775544443 34445667778888875 68999999999999999999999888643
No 39
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.43 E-value=2.5e-05 Score=65.01 Aligned_cols=79 Identities=19% Similarity=0.227 Sum_probs=73.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHHHHHHHHh
Q 011062 171 MKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILC 250 (494)
Q Consensus 171 l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 250 (494)
+++.+++.++.++.......+++.||++..+..++++.++|+++++++++ ++|..|+++++.+++.+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~--~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIP--RFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999999999999999999999999999986 7899999999999999999998888864
Q ss_pred c
Q 011062 251 S 251 (494)
Q Consensus 251 ~ 251 (494)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 3
No 40
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.29 E-value=5.3e-06 Score=69.05 Aligned_cols=81 Identities=11% Similarity=0.147 Sum_probs=75.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q 011062 393 MTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLIT 472 (494)
Q Consensus 393 ~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~ 472 (494)
++++++++.++.++....++++++.||+|..++.++.+. ++++++++.+ +|++|..|+++++.+++.+......+..
T Consensus 1 il~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~l--i~~~G~~Gaa~a~~i~~~~~~~~~~~~~ 77 (146)
T PF14667_consen 1 ILQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA-IVNIILNYIL--IPRFGIYGAAIATAISEIVSFILNLWYV 77 (146)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999999999999999999987 8999999999 7789999999999999999999998888
Q ss_pred HhcC
Q 011062 473 LRRK 476 (494)
Q Consensus 473 ~k~~ 476 (494)
+|.-
T Consensus 78 ~k~~ 81 (146)
T PF14667_consen 78 RKKI 81 (146)
T ss_pred HHHh
Confidence 8753
No 41
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.17 E-value=0.00011 Score=69.52 Aligned_cols=199 Identities=10% Similarity=0.040 Sum_probs=147.6
Q ss_pred HHHhhHHHHHHHHHHHHHhHHHHHHhhc---cChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhhcccchhHHHH
Q 011062 51 QVLFSLPMILTNVSYYAIPLVSVMFAGH---LGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQGFGAKQYRMLGI 127 (494)
Q Consensus 51 l~~~~~p~~~~~~~~~~~~~i~~~~i~~---lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~ 127 (494)
..+......-+.++-.+..=-|.+++.. +.-++-|.|.++.+..++..-.+...+.-....+.+|...++++|+.++
T Consensus 241 ~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k~ 320 (530)
T KOG2864|consen 241 LLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENVKK 320 (530)
T ss_pred HHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHHH
Confidence 3444444456666667777777777773 5667888899998888888788888888888888888887776665554
Q ss_pred ---HHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCchHHHHH
Q 011062 128 ---YMQTSCIISCFFSIIISFL-WFYTEPILILLHQDPNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFF 203 (494)
Q Consensus 128 ---~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (494)
++...+.+...+++.+..+ ...+++.+.+++++.-....+...+++.+..+++.+++.+..+++.+....+..-..
T Consensus 321 a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~ 400 (530)
T KOG2864|consen 321 AVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKH 400 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhc
Confidence 5556666666677666655 667777888887765544555678999999999999999999999887766543332
Q ss_pred ---HHHHHHHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHHHHHHHHhc
Q 011062 204 ---SALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILCS 251 (494)
Q Consensus 204 ---~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 251 (494)
..+..+..++.+++++-. +|..|..+|.++...+..+..+++.++.
T Consensus 401 n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 401 NKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred ccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667888888874 5779999999999988888888777644
No 42
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.09 E-value=0.00087 Score=62.06 Aligned_cols=184 Identities=15% Similarity=0.180 Sum_probs=109.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-hcCCchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 011062 277 MPSAAMVCLEFWSFEILVFLA-GLMPNSELSTSLIAMCVNTQAICYNF-SYGLSAAASTRVSNELGAGTIDRAKNAMAVT 354 (494)
Q Consensus 277 ~p~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~a~~~~~~~i~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (494)
......+........+...++ ..+| +++.|.|+....+.++...+ ..|+.++..-..+++..+ .++.++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~il~r~l~--~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~~~ 81 (273)
T PF01943_consen 6 LWLFLSNILSALIGFITIPILARYLG--PEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFSSV 81 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC--HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHHHH
Confidence 334444444444333344344 4455 88999999999998888776 668888888777776432 23333333333
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhcCchhhHHHHHHHHHHHH
Q 011062 355 LKLVVLLALIIDLALAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFI 434 (494)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 434 (494)
.....+. .....+.. .+...+ ++++.. ...........++..........+++.++.+.....++... +.
T Consensus 82 ~~~~~~~-~~i~~~~~----~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 151 (273)
T PF01943_consen 82 LFLLLIF-SLIFLLIL----LIASFF-GNPSLS---LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS-LL 151 (273)
T ss_pred HHHHHHH-HHHHHHHH----HHHHHc-CCchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 3333322 22222222 222233 333211 11222222222578888888999999999999999888876 44
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhc
Q 011062 435 GMPLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLRR 475 (494)
Q Consensus 435 ~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~k~ 475 (494)
.+...+.+... ..+..+...+..++.++..++.....+|.
T Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (273)
T PF01943_consen 152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRK 191 (273)
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444333 33488899999999998888887777654
No 43
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.04 E-value=0.0031 Score=57.35 Aligned_cols=160 Identities=10% Similarity=0.012 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 011062 266 FSVLLTNLKVAMPSAAMVCLEFWSFEILVFLAGL-MPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTI 344 (494)
Q Consensus 266 ~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~a~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (494)
.....++.++-+|.+++.....++-++.+--+.+ ..+..+..|+|+++..+..++..+...+.++....+.+ +.
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~r 81 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----KR 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----hh
Confidence 3567889999999999999999998888877765 33334669999999999999999998888877665543 22
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhh-hhhccCCcHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhcCchhh
Q 011062 345 DRAKNAMAVTLKLVVLLALI-IDLALAFGHNI-WASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHL 422 (494)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 422 (494)
++ ++........+...... ..+..-.++.. +-+++.-|+++.+.+...+.++.+..+++++.....+++.=.+++..
T Consensus 82 sr-r~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 82 SR-RKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 22 22222222222222111 11222222333 34455568899999999999999999999999999988886666666
Q ss_pred HHHHHHHHH
Q 011062 423 AVWVNLATF 431 (494)
Q Consensus 423 ~~~~~~~~~ 431 (494)
....++...
T Consensus 161 V~~aSI~~v 169 (345)
T PF07260_consen 161 VGSASIADV 169 (345)
T ss_pred eehHHHHHH
Confidence 666665543
No 44
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.94 E-value=0.0037 Score=57.10 Aligned_cols=162 Identities=17% Similarity=0.251 Sum_probs=105.0
Q ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011062 294 VFLAGLMPNSELSTSLIAMCVNTQAICYNF-SYGLSAAASTRVSNELGAGTIDRAKNAMAVTLKLVVLLALIIDLALAFG 372 (494)
Q Consensus 294 ~~~~~~l~~~~~~~a~~~~~~~i~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (494)
.++...++ +++.|.|+....+..+...+ ..++.+...- ..++|.++.++..+.......+..+...++
T Consensus 9 ~~lar~l~--~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 77 (251)
T PF13440_consen 9 ILLARYLG--PEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL---- 77 (251)
T ss_pred HHHHHHCC--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 34444555 88999999999988887765 4455444432 233566666666666655544444333332
Q ss_pred hhhhhhccCCcHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchh
Q 011062 373 HNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLYVKG 452 (494)
Q Consensus 373 ~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G 452 (494)
...+...+ ++++ ...++.+..+..++..+.......+++.+|.+.......... +........+. ..+.+..+
T Consensus 78 ~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~ 150 (251)
T PF13440_consen 78 AILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLL-YLGLNLWS 150 (251)
T ss_pred HHHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHH-HHHhhHHH
Confidence 23333333 3332 334566777788889999999999999999999999998876 43433333332 22337888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011062 453 LWIGLVCGLASQACSLFLITL 473 (494)
Q Consensus 453 ~~~a~~~~~~i~~~~~~~~~~ 473 (494)
..++..++..+..+......+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 151 ILLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 899988888888776665444
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.48 E-value=0.092 Score=49.07 Aligned_cols=341 Identities=11% Similarity=0.069 Sum_probs=193.0
Q ss_pred HHHHHHhHHhhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHhhH
Q 011062 98 GFAFTQGLSGALETLCGQGFGAKQYRMLGIYMQTSCIISCFFSIIISFLWFYTEPILILLHQDPNISEQAGLYMKYLIPG 177 (494)
Q Consensus 98 ~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~ 177 (494)
...+..|++...++.+|...=++|.+++..-.-..+.+....+..++.+. -...++... .|=...+..
T Consensus 73 S~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~v-------f~~~~~~si-----~yk~l~~~~ 140 (467)
T COG4267 73 SQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIV-------FFVNNQYSI-----VYKILACAL 140 (467)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHh-------hhhcCchhH-----HHHHHHHHH
Confidence 36668889999999999999888888877766655555555554444221 111112111 111223444
Q ss_pred HHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHHHHHHHHhccccccc
Q 011062 178 LFAFGFLQNFLRFLQTQSIVMPLVFFSALPLAIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILCSKKTGRT 257 (494)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~ 257 (494)
....+..-+...++.+.+|.+.....-.++.++.+.+..++- +.+..|..++..++..+.......+..+.-+-+++
T Consensus 141 FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~~ 217 (467)
T COG4267 141 FVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILRYFKSSRR 217 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccc
Confidence 555566666777888899999888888888888877777665 46899999999999999888888777654332222
Q ss_pred cCCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCchhHHHHH------HHHHHHHHHHHHHHHH-----H
Q 011062 258 WEGFSFESFSVLLTNLKVAMPSAAMVCLEFWSFEILVFLAGLMPNSELSTSL------IAMCVNTQAICYNFSY-----G 326 (494)
Q Consensus 258 ~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~------~~~~~~i~~l~~~~~~-----~ 326 (494)
.. +... . ..+--....+.....+.+-.+++.+.=.-+++.+-.+. |-++.-...+...|.. .
T Consensus 218 i~-FdFL--~----~~~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i~ 290 (467)
T COG4267 218 IG-FDFL--L----YRRKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLIS 290 (467)
T ss_pred cc-eehh--h----hhhcchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeeee
Confidence 11 1111 1 11111223334444455544554443222222211111 2222222222222222 2
Q ss_pred HHHHHHHHHHHHhc----C-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHhhhH
Q 011062 327 LSAAASTRVSNELG----A-------GTIDRAKNAMAVTLKLVVLLALIIDLALAFGHNIWASFFTDSREIVQEFASMTP 395 (494)
Q Consensus 327 ~~~~~~~~~~~~~~----~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~ 395 (494)
+.+...+.--+.+. . ++.++.....+..+.-..-+-...++.++.+++.+...+.-++ .-.+.++
T Consensus 291 lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~----~~l~lF~ 366 (467)
T COG4267 291 LETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSE----YYLDLFY 366 (467)
T ss_pred eeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH----HHHHHHH
Confidence 33333333222221 1 2344455566666666777778888999999999998885443 3445566
Q ss_pred HHHHHHHHHhHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHH-hcCCCchhHHHHHHHHHHHHH
Q 011062 396 FIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGF-KLNLYVKGLWIGLVCGLASQA 465 (494)
Q Consensus 396 i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~-~~~~g~~G~~~a~~~~~~i~~ 465 (494)
+-.++.-........-++.--.++-+..+-.+..-. +.|..+.++... .|++--+|...|..++..+..
T Consensus 367 vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~fl-i~N~ilT~i~l~lgp~~~g~gff~a~fl~vlv~~ 436 (467)
T COG4267 367 VDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALFL-ISNGILTFIFLELGPGYYGVGFFLASFLYVLVAF 436 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH-HHhHHHHHHHHHhCccceehHHHHHHHHHHHHHH
Confidence 666666666666656566666667777666665543 555555555433 344444555555555444433
No 46
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=70.10 E-value=30 Score=25.12 Aligned_cols=42 Identities=19% Similarity=0.175 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 011062 323 FSYGLSAAASTRVSNELGAGTIDRAKNAMAVTLKLVVLLALI 364 (494)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (494)
+..-++......+-+.+.+||++++++..+++-+++.+-.+.
T Consensus 32 PlGi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 32 PLGIVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred hHHHHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 344455555567788888999999999999998887654433
No 47
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=66.87 E-value=1.3e+02 Score=29.39 Aligned_cols=63 Identities=13% Similarity=0.094 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHhhhHHHHHHHHHHhHHHHH
Q 011062 343 TIDRAKNAMAVTLKLVVLLALIIDLALAFGHNIWASFFTDSREIVQEFASMTPFIVISIIFDAMQAIL 410 (494)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~ 410 (494)
++++.++..+++..++........++.....-|+...-.+.+ ..+++.+......+.......
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~~~~~-----~~~~~~~~~~l~~lK~~~l~~ 151 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQVYGFS-----FWEFLLLLLFLLALKWWNLLL 151 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999988888877777766333322 223344444444444444433
No 48
>COG4267 Predicted membrane protein [Function unknown]
Probab=55.88 E-value=2e+02 Score=27.84 Aligned_cols=137 Identities=19% Similarity=0.129 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHhhhHHHHHH
Q 011062 321 YNFSYGLSAAASTRVSNELGAGTIDRAKNAMAVTLKLVVLLALIIDLALAFGHNIWASFFTDSREIVQEFASMTPFIVIS 400 (494)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~ 400 (494)
..+..+++...+-.++...=++|.++....+.-.....+..+..++.+... .+++ +.... =...+..
T Consensus 74 ~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~---------~~~~--~si~y--k~l~~~~ 140 (467)
T COG4267 74 QIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVFF---------VNNQ--YSIVY--KILACAL 140 (467)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhh---------hcCc--hhHHH--HHHHHHH
Confidence 345667777888888888888888888888877777777666665532221 1122 11111 1223334
Q ss_pred HHHHhHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 011062 401 IIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLYVKGLWIGLVCGLASQACSLFLITLR 474 (494)
Q Consensus 401 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~k 474 (494)
.+..+..-+....+-+.+|-+...+...++. ++.+.++.++-.. +..|..++.-++..+..........|
T Consensus 141 FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~-~~sv~La~~~~~~---~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 141 FVGMSLVWILMIFLSGLKKYKLIVLSFFIGY-VVSVLLARLFLKS---PIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh---HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4445555566677778888888888777765 7777777777544 78999999999988887776555443
No 49
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=48.17 E-value=3e+02 Score=27.68 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=38.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhHHHHHHhhc-cC--hHHHHHHHHHHHHHHHHHHHHHHh
Q 011062 48 AKDQVLFSLPMILTNVSYYAIPLVSVMFAGH-LG--ELQLAGATLANSWAYVTGFAFTQG 104 (494)
Q Consensus 48 ~~~l~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg--~~~~~~~~~~~~i~~~~~~~~~~g 104 (494)
.|+-+.++.+-+.+++........-..+-.. .| +...|..-+..++...+ .-+..|
T Consensus 11 ~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi-~DP~~G 69 (467)
T COG2211 11 LKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAI-TDPIMG 69 (467)
T ss_pred HHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHH-hcchhe
Confidence 6788889988888888887777776666665 44 55666666666666666 444443
No 50
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=43.18 E-value=3.3e+02 Score=26.64 Aligned_cols=35 Identities=17% Similarity=0.396 Sum_probs=28.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHH
Q 011062 121 QYRMLGIYMQTSCIISCFFSIIISFL-WFYTEPILI 155 (494)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~ 155 (494)
++++.+++++.+...+.....+..++ ....-|+..
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999998888776 677777765
No 51
>PF11683 DUF3278: Protein of unknown function (DUF3278); InterPro: IPR021697 This bacterial family of proteins has no known function.
Probab=40.95 E-value=1.9e+02 Score=23.16 Aligned_cols=45 Identities=7% Similarity=0.008 Sum_probs=34.3
Q ss_pred HHHHhhcccccHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHhhc
Q 011062 34 RWWRKWRKVLDVEEAKDQVLFSLPMILTNVSYYAIPLVSVMFAGH 78 (494)
Q Consensus 34 ~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~~~~i~~ 78 (494)
+++-..+..+|....+++-+.+--.++......+...+-..+++.
T Consensus 12 K~fygI~GplDE~r~~ei~rign~a~i~l~~~~l~~~li~l~l~~ 56 (129)
T PF11683_consen 12 KRFYGIQGPLDEYRRQEINRIGNNAFIILFYYSLLLNLISLLLAS 56 (129)
T ss_pred HHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556777888888889999988888887777777777777665
No 52
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=38.63 E-value=1.9e+02 Score=25.51 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=26.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCC
Q 011062 119 AKQYRMLGIYMQTSCIISCFFSIIISFLWFYTEPILILLHQ 159 (494)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~ 159 (494)
.++++...+.+..++...+++-+++++++.+..++..+++.
T Consensus 140 ~E~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v 180 (230)
T PF03904_consen 140 HEKYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHV 180 (230)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhH
Confidence 34566666666666666665555555567777777777653
No 53
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=37.76 E-value=2.6e+02 Score=27.63 Aligned_cols=73 Identities=8% Similarity=0.117 Sum_probs=51.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011062 276 AMPSAAMVCLEFWSFEILVFLAGLMPNSELSTSLIAMCVNTQAICYNFSYGLSAAASTRVSNELGAGTIDRAKNAMAVTL 355 (494)
Q Consensus 276 ~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (494)
+-|.+++.+.--++-....++.+..-+++.+++ -+......|++......+++.+|+.+..+-+|...-++
T Consensus 379 sGpLIiSh~yLLiGcslPIWms~~p~~~~ral~---------~laGiLalGiGDTmASiiG~r~G~~RW~~TkKTlEGT~ 449 (510)
T KOG2468|consen 379 SGPLIISHFYLLIGCSLPIWMSNSPCGGDRALA---------LLAGILALGIGDTMASIIGKRYGRIRWSGTKKTLEGTL 449 (510)
T ss_pred CCceeHHHHHHHHhcccchhccCCCCCchhhhh---------hhhhheeeccchHHHHHHhhhhcceecCCCcceeehhh
Confidence 567777777666666666777776553333333 33556777999999999999999988888777766655
Q ss_pred HH
Q 011062 356 KL 357 (494)
Q Consensus 356 ~~ 357 (494)
..
T Consensus 450 Af 451 (510)
T KOG2468|consen 450 AF 451 (510)
T ss_pred HH
Confidence 43
No 54
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=35.97 E-value=3.5e+02 Score=27.24 Aligned_cols=53 Identities=6% Similarity=-0.215 Sum_probs=27.7
Q ss_pred HHHHHHhHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhh
Q 011062 63 VSYYAIPLVSVMFAGHLGELQLAGATLANSWAYVTGFAFTQGLSGALETLCGQG 116 (494)
Q Consensus 63 ~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~ 116 (494)
.+.++++..|...+...+++.=.++++..+-..++ +....-.-+..+|+.+..
T Consensus 39 ~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll-~~vf~v~~~i~sPl~gyL 91 (493)
T KOG1330|consen 39 CLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLL-QTVFIVVFMIASPLFGYL 91 (493)
T ss_pred HHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccch-hHHHHHHHHHHHHHHHHH
Confidence 44566777888888775555555555544444444 222222223344555554
No 55
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=35.67 E-value=1.3e+02 Score=28.41 Aligned_cols=56 Identities=18% Similarity=0.244 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh-------cCCCchhHHHHHHHHHHHHHHHHHHHHHhcCc
Q 011062 420 QHLAVWVNLATFYFIGMPLALLFGFK-------LNLYVKGLWIGLVCGLASQACSLFLITLRRKW 477 (494)
Q Consensus 420 ~~~~~~~~~~~~~~~~i~~~~~l~~~-------~~~g~~G~~~a~~~~~~i~~~~~~~~~~k~~~ 477 (494)
.+..-..++++ ++..|..++-+.+ |.....-.++......++.++..++++||++|
T Consensus 255 N~~mk~LTvvt--~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 255 NEIMKILTVVS--TIFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33444445554 3444555554432 22222223444444455556667888888888
No 56
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=34.97 E-value=54 Score=25.92 Aligned_cols=12 Identities=8% Similarity=-0.053 Sum_probs=3.8
Q ss_pred HHHHHHhcCchh
Q 011062 468 LFLITLRRKWTK 479 (494)
Q Consensus 468 ~~~~~~k~~~~~ 479 (494)
..++.+|+++|.
T Consensus 84 i~y~irR~~Kk~ 95 (122)
T PF01102_consen 84 ISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHS---
T ss_pred HHHHHHHHhccC
Confidence 334444444443
No 57
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=33.11 E-value=2.8e+02 Score=22.97 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=20.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011062 343 TIDRAKNAMAVTLKLVVLLALIIDLALA 370 (494)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (494)
+.++.++..++...+++.++++......
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (163)
T PF04235_consen 9 RPEEHRKLLRRLLLIGLAVGLPLALLSA 36 (163)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677888888877777777666655
No 58
>PRK09546 zntB zinc transporter; Reviewed
Probab=32.98 E-value=1.6e+02 Score=27.93 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCc
Q 011062 454 WIGLVCGLASQACSLFLITLRRKW 477 (494)
Q Consensus 454 ~~a~~~~~~i~~~~~~~~~~k~~~ 477 (494)
++...+..++.++..+++++|++|
T Consensus 300 y~~~l~im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 300 FSIFCLLLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 444444455555667778888887
No 59
>TIGR00765 yihY_not_rbn YihY family protein (not ribonuclease BN). Members of this subfamily include the largely uncharacterized BrkB (Bordetella resist killing by serum B) from Bordetella pertussis. Some members have an additional C-terminal domain. Paralogs from E. coli (yhjD) and Mycobactrium tuberculosis (Rv3335c) are part of a smaller, related subfamily that form their own cluster.
Probab=30.87 E-value=4.1e+02 Score=24.15 Aligned_cols=15 Identities=13% Similarity=0.228 Sum_probs=7.0
Q ss_pred HHHHHHhhhcccchh
Q 011062 109 LETLCGQGFGAKQYR 123 (494)
Q Consensus 109 ~~~~~s~~~g~~~~~ 123 (494)
......+.++.++.+
T Consensus 103 l~~~ln~i~~~~~~r 117 (259)
T TIGR00765 103 IDSTLNKIWRVKPRR 117 (259)
T ss_pred HHHHHHHHhCCCCCC
Confidence 333444555554443
No 60
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=28.47 E-value=2.7e+02 Score=23.61 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHHHHHHHHh
Q 011062 209 AIHFGIAYSLVHWTSLGFGGAPLACSISLWISTLSLAIYILC 250 (494)
Q Consensus 209 ~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 250 (494)
+++++.+.+-+.. -+..|...++.++.++..++...|.++
T Consensus 121 Ivcv~~Si~ti~~--~~~s~s~~~~ti~yIiL~iLf~~Ya~n 160 (189)
T PF05313_consen 121 IVCVIMSIITIIV--NSVSGSSGAYTISYIILAILFCIYAFN 160 (189)
T ss_pred HHHHHHHHHHHHH--HhhhHhHHHHHHHHHHHHHHHHHheee
Confidence 4444444433332 244466777888888888777777643
No 61
>PTZ00370 STEVOR; Provisional
Probab=27.77 E-value=93 Score=28.54 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=18.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhc---CchhH
Q 011062 449 YVKGLWIGLVCGLASQACSLFLITLRR---KWTKM 480 (494)
Q Consensus 449 g~~G~~~a~~~~~~i~~~~~~~~~~k~---~~~~~ 480 (494)
+..|++.-.++-..+..++++++++|+ .||+.
T Consensus 255 ~Pygiaalvllil~vvliilYiwlyrrRK~swkhe 289 (296)
T PTZ00370 255 YPYGIAALVLLILAVVLIILYIWLYRRRKNSWKHE 289 (296)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 455666666666666666666655443 46544
No 62
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=26.28 E-value=2e+02 Score=27.34 Aligned_cols=53 Identities=21% Similarity=0.187 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-------cCCCchhHHHHHHHHHHHHHHHHHHHHHhcCc
Q 011062 423 AVWVNLATFYFIGMPLALLFGFK-------LNLYVKGLWIGLVCGLASQACSLFLITLRRKW 477 (494)
Q Consensus 423 ~~~~~~~~~~~~~i~~~~~l~~~-------~~~g~~G~~~a~~~~~~i~~~~~~~~~~k~~~ 477 (494)
.-..++++ ++-.|..++.+.+ |..+..-.++...+..++.+++.+++++|++|
T Consensus 262 mk~LTi~s--~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m~~~~~~~~~~frrk~W 321 (322)
T COG0598 262 MKILTIVS--TIFLPPTLITGFYGMNFKGMPELDWPYGYPIALILMLLLALLLYLYFRRKGW 321 (322)
T ss_pred HHHHHHHH--HHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 33344443 3445665555443 22222223344445555666667788888888
No 63
>PF14184 YrvL: Regulatory protein YrvL
Probab=23.20 E-value=4e+02 Score=21.45 Aligned_cols=101 Identities=16% Similarity=0.175 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhCCC-hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 011062 130 QTSCIISCFFSIIISFLWFYTEPILILLHQD-PNISEQAGLYMKYLIPGLFAFGFLQNFLRFLQTQSIVMPLVFFSALPL 208 (494)
Q Consensus 130 ~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 208 (494)
...+...+.+.++.+...+...-+++++|.+ +.......-.+....++.++..+...+...+.-.+-.+... .....
T Consensus 5 ~~~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~--~~l~~ 82 (132)
T PF14184_consen 5 IIFIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLF--ILLAF 82 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHH--HHHHH
Confidence 3444445555555555566666677777654 22233333334445667777777777766665553333332 24445
Q ss_pred HHHHHHHHHHhhhcCcccchhHHH
Q 011062 209 AIHFGIAYSLVHWTSLGFGGAPLA 232 (494)
Q Consensus 209 ~~~i~~~~~li~~~~~g~~g~~~a 232 (494)
.+....++..++..+.=+.++.+.
T Consensus 83 ~id~~~t~~~i~~aD~~m~sI~is 106 (132)
T PF14184_consen 83 IIDFLFTWITIYTADELMESISIS 106 (132)
T ss_pred HHHHHHHHHHHHHHHHHhcceeeC
Confidence 677777777777544333344333
No 64
>PRK11663 regulatory protein UhpC; Provisional
Probab=22.89 E-value=7.4e+02 Score=24.40 Aligned_cols=26 Identities=12% Similarity=0.065 Sum_probs=15.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHH
Q 011062 447 NLYVKGLWIGLVCGLASQACSLFLIT 472 (494)
Q Consensus 447 ~~g~~G~~~a~~~~~~i~~~~~~~~~ 472 (494)
+.|..+++....+..++.++..+...
T Consensus 399 ~~g~~~~f~~~~~~~~~~~~~~~~~~ 424 (434)
T PRK11663 399 IWHWTGFFVVISIAAGISALLLLPFL 424 (434)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777777777666666655443333
No 65
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=22.74 E-value=6.9e+02 Score=24.02 Aligned_cols=24 Identities=8% Similarity=-0.011 Sum_probs=12.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHH
Q 011062 447 NLYVKGLWIGLVCGLASQACSLFL 470 (494)
Q Consensus 447 ~~g~~G~~~a~~~~~~i~~~~~~~ 470 (494)
..|....++......++..+....
T Consensus 373 ~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 373 NYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHH
Confidence 346555555555544444444433
No 66
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=22.72 E-value=5.9e+02 Score=23.23 Aligned_cols=101 Identities=9% Similarity=-0.027 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHhhhHHHHHHH
Q 011062 322 NFSYGLSAAASTRVSNELGAGTIDRAKNAMAVTLKLVVLLALIIDLALAFGHNIWASFFTDSREIVQEFASMTPFIVISI 401 (494)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~ 401 (494)
.+...+...+....-+--..+..+..++....+..++...++.=++..+.+++ ..++.++.+....+.. .-|+.-..
T Consensus 89 fflL~lEvSvvvFgL~fghlds~~Si~r~l~iT~~is~~~s~~Q~ilef~~~d--~~l~~~~~~~~~hgg~-~fW~~~s~ 165 (261)
T PF10160_consen 89 FFLLSLEVSVVVFGLQFGHLDSRSSIKRTLLITGLISLADSLTQAILEFGFGD--VPLFIENFDLFGHGGW-GFWFISSL 165 (261)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHheeecCc--ccccCCCCCcCCcCCe-ehHHHHHH
Confidence 33444444444444332222334444444444444444444444444444554 5566555555555443 34444445
Q ss_pred HHHhHHHHHHHHHhhcCchhhHHH
Q 011062 402 IFDAMQAILSGVARGCGWQHLAVW 425 (494)
Q Consensus 402 ~~~~~~~~~~~~l~~~g~~~~~~~ 425 (494)
++...+....-.-....+.+.|.+
T Consensus 166 ~f~~vY~~I~~L~~~r~r~~LPar 189 (261)
T PF10160_consen 166 VFALVYGFILILTPLRWRDRLPAR 189 (261)
T ss_pred HHHHHHHHHHHHHhccccccCCCC
Confidence 555555544444555556555443
No 67
>PRK11056 hypothetical protein; Provisional
Probab=21.51 E-value=4e+02 Score=20.86 Aligned_cols=80 Identities=13% Similarity=0.037 Sum_probs=49.7
Q ss_pred HhhhHHHHHHHHHHhHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHH
Q 011062 391 ASMTPFIVISIIFDAMQAILSGVARGCGWQHLAVWVNLATFYFIGMPLALLFGFKLNLYVKGLWIGLVCGLASQACSLFL 470 (494)
Q Consensus 391 ~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~ 470 (494)
-.+++++++....++++.-..+--...|-++...-+-+++... =.+++=+.+|+.| +..+...+..++.+|
T Consensus 36 FSiFPlIaLvLavycLyQ~Yl~~~m~eg~P~~a~acFflG~f~---ySA~vraeyPeiG------SNF~p~il~~~L~~W 106 (120)
T PRK11056 36 FSIFPLIALVLAVYCLHQRYLNRPMPEGLPGLAAACFFLGVFL---YSAFVRAEYPEIG------SNFFPAVLSVILVFW 106 (120)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH---HHHHHHhcCcccc------cchHHHHHHHHHHHH
Confidence 3456777777777777776666666667777666655555322 1234444466666 566677777777777
Q ss_pred HHHhcCchh
Q 011062 471 ITLRRKWTK 479 (494)
Q Consensus 471 ~~~k~~~~~ 479 (494)
..+|-++.+
T Consensus 107 i~~kl~~~~ 115 (120)
T PRK11056 107 IGRKLRNRK 115 (120)
T ss_pred HHHHHhccc
Confidence 777655443
No 68
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=21.23 E-value=1.8e+02 Score=18.17 Aligned_cols=20 Identities=10% Similarity=0.137 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011062 453 LWIGLVCGLASQACSLFLIT 472 (494)
Q Consensus 453 ~~~a~~~~~~i~~~~~~~~~ 472 (494)
+|.++.++.++.........
T Consensus 8 VW~sYg~t~l~l~~li~~~~ 27 (45)
T TIGR03141 8 VWLAYGITALVLAGLILWSL 27 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35555555555444443333
No 69
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=20.47 E-value=1.3e+02 Score=27.68 Aligned_cols=27 Identities=19% Similarity=0.137 Sum_probs=16.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhc
Q 011062 449 YVKGLWIGLVCGLASQACSLFLITLRR 475 (494)
Q Consensus 449 g~~G~~~a~~~~~~i~~~~~~~~~~k~ 475 (494)
...|++.-.++-..+..++++++++|+
T Consensus 259 ~Pcgiaalvllil~vvliiLYiWlyrr 285 (295)
T TIGR01478 259 LPYGIAALVLIILTVVLIILYIWLYRR 285 (295)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666666666666665544
No 70
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=20.44 E-value=4.4e+02 Score=24.95 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCc
Q 011062 454 WIGLVCGLASQACSLFLITLRRKW 477 (494)
Q Consensus 454 ~~a~~~~~~i~~~~~~~~~~k~~~ 477 (494)
++......++.++..+++++|++|
T Consensus 292 ~~~~l~~~~~~~~~~~~~f~rk~W 315 (316)
T PRK11085 292 YPGAIILMILAGLAPYLYFKRKNW 315 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc
Confidence 333344444455556778888888
Done!