Query 011063
Match_columns 494
No_of_seqs 100 out of 115
Neff 2.3
Searched_HMMs 46136
Date Fri Mar 29 07:42:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011063.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011063hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06886 TPX2: Targeting prote 99.8 4.6E-19 1E-23 138.1 7.3 57 270-326 1-57 (57)
2 PF12214 TPX2_importin: Cell c 72.0 2.5 5.4E-05 40.4 2.0 65 261-355 66-130 (176)
3 PF10595 UPF0564: Uncharacteri 59.8 16 0.00035 37.2 5.1 56 261-329 2-57 (356)
4 KOG2891 Surface glycoprotein [ 54.2 21 0.00046 37.5 5.0 46 267-315 381-427 (445)
5 PF11690 DUF3287: Protein of u 41.3 78 0.0017 28.7 5.9 46 269-315 31-77 (109)
6 PF09121 Tower: Tower; InterP 37.6 25 0.00054 27.4 1.9 39 262-302 3-41 (42)
7 PRK13729 conjugal transfer pil 31.2 1.6E+02 0.0034 32.6 7.2 55 273-328 72-130 (475)
8 PF08581 Tup_N: Tup N-terminal 30.1 1.6E+02 0.0034 25.1 5.6 43 278-320 26-74 (79)
9 PF07716 bZIP_2: Basic region 29.3 1.5E+02 0.0033 22.6 5.0 27 277-303 21-47 (54)
10 PF13815 Dzip-like_N: Iguana/D 27.5 1.3E+02 0.0028 26.3 5.0 51 265-319 67-117 (118)
11 PRK13922 rod shape-determining 27.5 1.5E+02 0.0032 28.7 5.8 43 283-325 71-115 (276)
12 TIGR00219 mreC rod shape-deter 26.7 1.6E+02 0.0034 29.6 5.9 41 285-325 70-113 (283)
13 COG2916 Hns DNA-binding protei 24.8 3E+02 0.0065 25.6 6.9 39 274-313 8-46 (128)
14 KOG3859 Septins (P-loop GTPase 24.1 1.1E+02 0.0025 32.6 4.6 50 267-321 317-366 (406)
15 smart00338 BRLZ basic region l 22.9 3.1E+02 0.0066 21.4 5.8 41 277-318 22-62 (65)
16 PF04325 DUF465: Protein of un 22.3 1.5E+02 0.0033 22.4 3.9 34 283-317 1-34 (49)
17 KOG3654 Uncharacterized CH dom 21.4 80 0.0017 35.6 3.0 30 275-304 93-122 (708)
18 PF04696 Pinin_SDK_memA: pinin 20.9 3.3E+02 0.0073 24.5 6.3 20 273-292 31-50 (131)
19 KOG0492 Transcription factor M 20.2 1E+02 0.0023 31.3 3.3 40 277-316 172-211 (246)
No 1
>PF06886 TPX2: Targeting protein for Xklp2 (TPX2); InterPro: IPR009675 This family represents a conserved region approximately 60 residues long within the eukaryotic targeting protein for Xklp2 (TPX2). Xklp2 is a kinesin-like protein localised on centrosomes throughout the cell cycle and on spindle pole microtubules during metaphase. In Xenopus, it has been shown that Xklp2 protein is required for centrosome separation and maintenance of spindle bi-polarity []. TPX2 is a microtubule-associated protein that mediates the binding of the C-terminal domain of Xklp2 to microtubules. It is phosphorylated during mitosis in a microtubule-dependent way [].
Probab=99.78 E-value=4.6e-19 Score=138.11 Aligned_cols=57 Identities=61% Similarity=0.788 Sum_probs=56.4
Q ss_pred cchhHHHHHhHhhHHHHHHHhhhHHHHHHhHHHHhhhhHHHHHHHHHhhcccccCCC
Q 011063 270 FRLEERAERRKEFFSKLEEKIHAKEVEKSNLQEKSKESQEAEIKQLRKSLTFKATPM 326 (494)
Q Consensus 270 FrsdERAEKRKEFy~KLEEK~~AkE~EK~qlqAKsKEe~EAEIKkLRKSL~FKAtPM 326 (494)
|+||+||++|++||++|+||++++|.++.+++++++++++++|++|||+|+|||+||
T Consensus 1 l~t~~RA~~R~eF~~kl~EK~~~~e~~~~~~e~~~~e~ee~eik~LRk~lv~kA~Pm 57 (57)
T PF06886_consen 1 LHTDERAEERKEFDKKLEEKEKAKEAEKEEREAKQKEEEEEEIKQLRKELVFKAQPM 57 (57)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 799999999999999999999999999999999999999999999999999999998
No 2
>PF12214 TPX2_importin: Cell cycle regulated microtubule associated protein; InterPro: IPR022021 This domain is found in eukaryotes. This domain is typically between 127 to 182 amino acids in length. This domain is found associated with PF06886 from PFAM. This domain is found in the protein TPX2 (a.k.a p100) which is involved in cell cycling. It is only expressed between the start of the S phase and completion of cytokinesis. The microtubule-associated protein TPX2 has been reported to be crucial for mitotic spindle formation. This domain is close to the C-terminal of TPX2. The protein importin alpha regulates the activity of TPX2 by binding to the nuclear localisation signal in this domain.
Probab=71.96 E-value=2.5 Score=40.39 Aligned_cols=65 Identities=26% Similarity=0.402 Sum_probs=43.8
Q ss_pred ccccccccccchhHHHHHhHhhHHHHHHHhhhHHHHHHhHHHHhhhhHHHHHHHHHhhcccccCCCCCCCCCCCCCcccc
Q 011063 261 RRSGVSGFNFRLEERAERRKEFFSKLEEKIHAKEVEKSNLQEKSKESQEAEIKQLRKSLTFKATPMPSFYKEPPPKVELK 340 (494)
Q Consensus 261 r~T~~s~F~FrsdERAEKRKEFy~KLEEK~~AkE~EK~qlqAKsKEe~EAEIKkLRKSL~FKAtPMPsFY~eppPK~elK 340 (494)
..|.+.+|.|++++||..|.. -.+.+ ++ ..+|+++|. .-..+.+=..+++
T Consensus 66 ~~T~p~~F~L~T~~Ra~~r~~-~~~~~------------------~~----------~~~~~srp~-ki~~~~~~~p~~~ 115 (176)
T PF12214_consen 66 PPTEPQEFHLETEERAQQRSS-SVSSS------------------EE----------QFNFHSRPC-KILEDVPGVPEKK 115 (176)
T ss_pred CCCcccCceeehhhhhhcccc-ccccc------------------hh----------hcccccCcc-ccccCCCCCcccc
Confidence 457899999999999998843 11110 00 147889988 3333333345677
Q ss_pred cCCCCCCCCCCCCCC
Q 011063 341 KIPTTRAVSPKFGRN 355 (494)
Q Consensus 341 KiP~TRpkSPKlgRr 355 (494)
-.+.|.|+||+|-.+
T Consensus 116 ~~~~t~p~sp~~~~k 130 (176)
T PF12214_consen 116 VLPVTVPKSPAFALK 130 (176)
T ss_pred ccccCCCCChhhhcc
Confidence 788999999999633
No 3
>PF10595 UPF0564: Uncharacterised protein family UPF0564; InterPro: IPR019579 This entry represents proteins with no known function.
Probab=59.85 E-value=16 Score=37.16 Aligned_cols=56 Identities=34% Similarity=0.458 Sum_probs=31.4
Q ss_pred ccccccccccchhHHHHHhHhhHHHHHHHhhhHHHHHHhHHHHhhhhHHHHHHHHHhhcccccCCCCCC
Q 011063 261 RRSGVSGFNFRLEERAERRKEFFSKLEEKIHAKEVEKSNLQEKSKESQEAEIKQLRKSLTFKATPMPSF 329 (494)
Q Consensus 261 r~T~~s~F~FrsdERAEKRKEFy~KLEEK~~AkE~EK~qlqAKsKEe~EAEIKkLRKSL~FKAtPMPsF 329 (494)
++||+-+|.| +.|-+++++--.+-. ...|.+...++.+ ++|++.. --|+|+|+|.+
T Consensus 2 ~iTVP~PF~m--t~RE~~kk~~~~~~~---~~~e~~~~~~~~~---~ee~e~~-----k~FrA~pVP~~ 57 (356)
T PF10595_consen 2 KITVPKPFQM--TLREEEKKEKASKSQ---SDLEQEKKELKKQ---EEEAECK-----KKFRANPVPAH 57 (356)
T ss_pred CcCCCCCCCc--cHHHHhccchhhhhH---HHHHHHHHHHHHH---HHHHHhc-----cCCCCCCCCch
Confidence 4688888876 567777765222111 1223333333332 3444554 47999999984
No 4
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=54.15 E-value=21 Score=37.49 Aligned_cols=46 Identities=46% Similarity=0.665 Sum_probs=34.1
Q ss_pred cccc-chhHHHHHhHhhHHHHHHHhhhHHHHHHhHHHHhhhhHHHHHHHH
Q 011063 267 GFNF-RLEERAERRKEFFSKLEEKIHAKEVEKSNLQEKSKESQEAEIKQL 315 (494)
Q Consensus 267 ~F~F-rsdERAEKRKEFy~KLEEK~~AkE~EK~qlqAKsKEe~EAEIKkL 315 (494)
-|-| +-..|-++|+. |-|||++|.++...+||.+.+|++.+-+--|
T Consensus 381 kf~fekieareerrkq---keeeklk~e~qkikeleek~~eeedal~~al 427 (445)
T KOG2891|consen 381 KFEFEKIEAREERRKQ---KEEEKLKAEEQKIKELEEKIKEEEDALLLAL 427 (445)
T ss_pred HHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445 55566667765 8889999999999999999998887654333
No 5
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=41.31 E-value=78 Score=28.67 Aligned_cols=46 Identities=15% Similarity=0.292 Sum_probs=33.6
Q ss_pred ccchhHHHHHhHhhHHHHHHHhhhHHHHHHhHHHHhhh-hHHHHHHHH
Q 011063 269 NFRLEERAERRKEFFSKLEEKIHAKEVEKSNLQEKSKE-SQEAEIKQL 315 (494)
Q Consensus 269 ~FrsdERAEKRKEFy~KLEEK~~AkE~EK~qlqAKsKE-e~EAEIKkL 315 (494)
.| +++..+....|+.||+.++++.-.|+.+|..|-+. .-|-+++.|
T Consensus 31 ~~-~~kd~~ea~~F~~kV~~qH~~~~~e~r~L~kKi~~l~veRkmr~L 77 (109)
T PF11690_consen 31 HL-PSKDKKEAYDFIDKVVDQHQRYCDERRKLRKKIQDLRVERKMRAL 77 (109)
T ss_pred cC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44 44555666799999999999999999999888665 344444433
No 6
>PF09121 Tower: Tower; InterPro: IPR015205 This domain adopts a secondary structure consisting of a pair of long, antiparallel alpha-helices (the stem) that support a three-helix bundle (3HB) at their end. The 3HB contains a helix-turn-helix motif and is similar to the DNA binding domains of the bacterial site-specific recombinases, and of eukaryotic Myb and homeodomain transcription factors. The Tower domain has an important role in the tumour suppressor function of BRCA2, and is essential for appropriate binding of BRCA2 to DNA []. ; PDB: 1IYJ_D 1MIU_A.
Probab=37.60 E-value=25 Score=27.42 Aligned_cols=39 Identities=26% Similarity=0.314 Sum_probs=25.8
Q ss_pred cccccccccchhHHHHHhHhhHHHHHHHhhhHHHHHHhHHH
Q 011063 262 RSGVSGFNFRLEERAERRKEFFSKLEEKIHAKEVEKSNLQE 302 (494)
Q Consensus 262 ~T~~s~F~FrsdERAEKRKEFy~KLEEK~~AkE~EK~qlqA 302 (494)
++....+.||++ |||.| |=-..-+.+.++.|+--..+|+
T Consensus 3 K~~~G~~vFRn~-RaEek-EA~k~a~~qqkklE~Lf~kIQ~ 41 (42)
T PF09121_consen 3 KTPSGSYVFRNE-RAEEK-EAAKHAEAQQKKLEALFTKIQA 41 (42)
T ss_dssp E-SSSSEEEE-C-CHHHH-HHHHHHHHTTSHHHHHHHHHHT
T ss_pred ccCCCceEeecc-hHHHH-HHHHHHHHHHHHHHHHHHHHhc
Confidence 344667899974 77766 5555677777778877766664
No 7
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=31.23 E-value=1.6e+02 Score=32.57 Aligned_cols=55 Identities=13% Similarity=0.151 Sum_probs=30.3
Q ss_pred hHHHHHhHhhHHHHHHHhhhHH---HHHHhHHHHhhhhHHHHHHHHHhhccc-ccCCCCC
Q 011063 273 EERAERRKEFFSKLEEKIHAKE---VEKSNLQEKSKESQEAEIKQLRKSLTF-KATPMPS 328 (494)
Q Consensus 273 dERAEKRKEFy~KLEEK~~AkE---~EK~qlqAKsKEe~EAEIKkLRKSL~F-KAtPMPs 328 (494)
.+...+..||..+|+.=.+-.+ .....+|++.+ +.|+||++|+..+.- +++|...
T Consensus 72 teqQ~kasELEKqLaaLrqElq~~saq~~dle~KIk-eLEaE~~~Lk~Ql~a~~~~~~~~ 130 (475)
T PRK13729 72 TEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIE-KLGQDNAALAEQVKALGANPVTA 130 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHHHHHHHhhhcCCCCC
Confidence 3444566666555554322222 33334444433 778899999998743 5554433
No 8
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=30.11 E-value=1.6e+02 Score=25.11 Aligned_cols=43 Identities=28% Similarity=0.451 Sum_probs=28.1
Q ss_pred HhHhhHHHHHHHhhhHH------HHHHhHHHHhhhhHHHHHHHHHhhcc
Q 011063 278 RRKEFFSKLEEKIHAKE------VEKSNLQEKSKESQEAEIKQLRKSLT 320 (494)
Q Consensus 278 KRKEFy~KLEEK~~AkE------~EK~qlqAKsKEe~EAEIKkLRKSL~ 320 (494)
.+.+|-.||---+.-.. -+..+.+.+.|+.=|+||.+||..|-
T Consensus 26 ~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 26 QKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666655544333 23334456678888999999999874
No 9
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=29.33 E-value=1.5e+02 Score=22.57 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=21.8
Q ss_pred HHhHhhHHHHHHHhhhHHHHHHhHHHH
Q 011063 277 ERRKEFFSKLEEKIHAKEVEKSNLQEK 303 (494)
Q Consensus 277 EKRKEFy~KLEEK~~AkE~EK~qlqAK 303 (494)
++++++...||..+..++.+-.+|+.+
T Consensus 21 ~rkk~~~~~le~~~~~L~~en~~L~~~ 47 (54)
T PF07716_consen 21 QRKKQREEELEQEVQELEEENEQLRQE 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788999999999999888888544
No 10
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=27.54 E-value=1.3e+02 Score=26.28 Aligned_cols=51 Identities=27% Similarity=0.383 Sum_probs=37.6
Q ss_pred ccccccchhHHHHHhHhhHHHHHHHhhhHHHHHHhHHHHhhhhHHHHHHHHHhhc
Q 011063 265 VSGFNFRLEERAERRKEFFSKLEEKIHAKEVEKSNLQEKSKESQEAEIKQLRKSL 319 (494)
Q Consensus 265 ~s~F~FrsdERAEKRKEFy~KLEEK~~AkE~EK~qlqAKsKEe~EAEIKkLRKSL 319 (494)
...+-++|-+.-..-- ..|++++.....+..+++.+.++ ..++|++||+++
T Consensus 67 ~ieYLl~~q~~L~~~~---~~l~~~~~~~~~~~~~l~~~~~~-~~~~~k~lk~E~ 117 (118)
T PF13815_consen 67 SIEYLLHCQEYLSSQL---EQLEERLQELQQEIEKLKQKLKK-QKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence 3455567766666553 48899999888888888887665 455899999875
No 11
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=27.51 E-value=1.5e+02 Score=28.71 Aligned_cols=43 Identities=28% Similarity=0.304 Sum_probs=30.6
Q ss_pred HHHHHHHhhhHHHHHHhHHHHhh--hhHHHHHHHHHhhcccccCC
Q 011063 283 FSKLEEKIHAKEVEKSNLQEKSK--ESQEAEIKQLRKSLTFKATP 325 (494)
Q Consensus 283 y~KLEEK~~AkE~EK~qlqAKsK--Ee~EAEIKkLRKSL~FKAtP 325 (494)
|..|.+.+..+++|-.+|+++.. ++-++|..+||+-|.|+-..
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~~~~ 115 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLKESL 115 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 44666666666666666666654 45677889999999988654
No 12
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=26.73 E-value=1.6e+02 Score=29.60 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=26.2
Q ss_pred HHHHHhhhHHHHHHhHHHHhh---hhHHHHHHHHHhhcccccCC
Q 011063 285 KLEEKIHAKEVEKSNLQEKSK---ESQEAEIKQLRKSLTFKATP 325 (494)
Q Consensus 285 KLEEK~~AkE~EK~qlqAKsK---Ee~EAEIKkLRKSL~FKAtP 325 (494)
.|.+.+..+..|..+++++.+ ++.++|..+||+-|.|+...
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~~~~ 113 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSPLSS 113 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 455555555555444433332 33678999999999999753
No 13
>COG2916 Hns DNA-binding protein H-NS [General function prediction only]
Probab=24.77 E-value=3e+02 Score=25.63 Aligned_cols=39 Identities=28% Similarity=0.306 Sum_probs=26.4
Q ss_pred HHHHHhHhhHHHHHHHhhhHHHHHHhHHHHhhhhHHHHHH
Q 011063 274 ERAERRKEFFSKLEEKIHAKEVEKSNLQEKSKESQEAEIK 313 (494)
Q Consensus 274 ERAEKRKEFy~KLEEK~~AkE~EK~qlqAKsKEe~EAEIK 313 (494)
-|+--| |+|..|-|++..++..-.++++...++..++|+
T Consensus 8 l~~~~~-e~~~e~lee~~ek~eq~~~~r~~e~~~~~~~i~ 46 (128)
T COG2916 8 LRAMAR-ETYLELLEEMLEKEEQVVQERQEEEAAAIAEIE 46 (128)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555 788888887777776666666666666666665
No 14
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=24.09 E-value=1.1e+02 Score=32.56 Aligned_cols=50 Identities=30% Similarity=0.445 Sum_probs=24.0
Q ss_pred ccccchhHHHHHhHhhHHHHHHHhhhHHHHHHhHHHHhhhhHHHHHHHHHhhccc
Q 011063 267 GFNFRLEERAERRKEFFSKLEEKIHAKEVEKSNLQEKSKESQEAEIKQLRKSLTF 321 (494)
Q Consensus 267 ~F~FrsdERAEKRKEFy~KLEEK~~AkE~EK~qlqAKsKEe~EAEIKkLRKSL~F 321 (494)
+|+|- +-=+.||.||+..| +.+|.|..|+=-+.=.++|+++|.--+.|-.
T Consensus 317 p~s~q-et~eaKr~e~~~e~----qrkEee~rqmFvqrvkekE~elke~Ekel~~ 366 (406)
T KOG3859|consen 317 PFSLQ-ETYEAKRNEFLGEL----QRKEEEMRQMFVQRVKEKEAELKEAEKELHE 366 (406)
T ss_pred CccHH-HHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44442 23345666776553 3444444444444444445555554444433
No 15
>smart00338 BRLZ basic region leucin zipper.
Probab=22.94 E-value=3.1e+02 Score=21.36 Aligned_cols=41 Identities=27% Similarity=0.449 Sum_probs=30.4
Q ss_pred HHhHhhHHHHHHHhhhHHHHHHhHHHHhhhhHHHHHHHHHhh
Q 011063 277 ERRKEFFSKLEEKIHAKEVEKSNLQEKSKESQEAEIKQLRKS 318 (494)
Q Consensus 277 EKRKEFy~KLEEK~~AkE~EK~qlqAKsKEe~EAEIKkLRKS 318 (494)
++++.....||.+++..+.+-..|+.+-. .-+.+|..|+.-
T Consensus 22 ~rKk~~~~~Le~~~~~L~~en~~L~~~~~-~l~~e~~~lk~~ 62 (65)
T smart00338 22 ERKKAEIEELERKVEQLEAENERLKKEIE-RLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 56677888999999999999888887743 344556666553
No 16
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=22.26 E-value=1.5e+02 Score=22.37 Aligned_cols=34 Identities=26% Similarity=0.532 Sum_probs=23.4
Q ss_pred HHHHHHHhhhHHHHHHhHHHHhhhhHHHHHHHHHh
Q 011063 283 FSKLEEKIHAKEVEKSNLQEKSKESQEAEIKQLRK 317 (494)
Q Consensus 283 y~KLEEK~~AkE~EK~qlqAKsKEe~EAEIKkLRK 317 (494)
|.+|.+++++.+.+...++...- --..+|.+|++
T Consensus 1 f~~L~~~h~~Ld~~I~~~e~~~~-~~d~~l~~LKk 34 (49)
T PF04325_consen 1 FARLFEEHHELDKEIHRLEKRPE-PDDEELERLKK 34 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT---S-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHH
Confidence 45788888888888888887764 66667777765
No 17
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=21.42 E-value=80 Score=35.58 Aligned_cols=30 Identities=30% Similarity=0.263 Sum_probs=24.1
Q ss_pred HHHHhHhhHHHHHHHhhhHHHHHHhHHHHh
Q 011063 275 RAERRKEFFSKLEEKIHAKEVEKSNLQEKS 304 (494)
Q Consensus 275 RAEKRKEFy~KLEEK~~AkE~EK~qlqAKs 304 (494)
=|-.=-++.++||||..|.|++|..++|-.
T Consensus 93 lasemv~l~m~leekrraieaqkkkmea~f 122 (708)
T KOG3654|consen 93 LASEMVELSMRLEEKRRAIEAQKKKMEAIF 122 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455788999999999999998888754
No 18
>PF04696 Pinin_SDK_memA: pinin/SDK/memA/ protein conserved region; InterPro: IPR006786 This conserved region is located adjacent and C-terminal to a N-terminal pinin/SKD domain IPR006787 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque []. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=20.86 E-value=3.3e+02 Score=24.54 Aligned_cols=20 Identities=40% Similarity=0.606 Sum_probs=16.6
Q ss_pred hHHHHHhHhhHHHHHHHhhh
Q 011063 273 EERAERRKEFFSKLEEKIHA 292 (494)
Q Consensus 273 dERAEKRKEFy~KLEEK~~A 292 (494)
.+.+.+|.+.-.+|+||...
T Consensus 31 ~~~~~rR~eie~rleek~~~ 50 (131)
T PF04696_consen 31 TEQQKRRAEIEKRLEEKLKE 50 (131)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999998754
No 19
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=20.23 E-value=1e+02 Score=31.26 Aligned_cols=40 Identities=35% Similarity=0.377 Sum_probs=23.8
Q ss_pred HHhHhhHHHHHHHhhhHHHHHHhHHHHhhhhHHHHHHHHH
Q 011063 277 ERRKEFFSKLEEKIHAKEVEKSNLQEKSKESQEAEIKQLR 316 (494)
Q Consensus 277 EKRKEFy~KLEEK~~AkE~EK~qlqAKsKEe~EAEIKkLR 316 (494)
+.|.||..-|+=-.-.-..=-.+..||.|..|||||.+|.
T Consensus 172 aEraefSsSL~LTeTqVKIWFQNRRAKaKRlQeae~Ek~k 211 (246)
T KOG0492|consen 172 AERAEFSSSLELTETQVKIWFQNRRAKAKRLQEAELEKLK 211 (246)
T ss_pred HHHHhhhhhhhhhhhheehhhhhhhHHHHHHHHHHHHHhh
Confidence 4555666555421111111224677899999999998775
Done!