Query 011063
Match_columns 494
No_of_seqs 100 out of 115
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 20:02:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011063.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011063hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vp9_A General transcriptional 42.9 56 0.0019 27.6 6.3 60 265-324 20-89 (92)
2 3s9g_A Protein hexim1; cyclin 28.9 85 0.0029 27.3 5.3 36 283-318 39-80 (104)
3 3nmd_A CGMP dependent protein 28.4 1.2E+02 0.0041 24.7 5.8 35 288-323 33-68 (72)
4 4e29_A Chimeric WZZB chain len 26.3 1.2E+02 0.0042 28.9 6.5 48 273-320 113-160 (248)
5 3a2a_A Voltage-gated hydrogen 21.0 1.5E+02 0.005 23.5 4.8 44 267-318 4-47 (58)
6 3qh9_A Liprin-beta-2; coiled-c 20.2 1.4E+02 0.0049 24.9 4.9 48 273-320 15-78 (81)
7 1t2k_D Cyclic-AMP-dependent tr 18.9 2.7E+02 0.0093 20.7 5.8 41 277-318 18-58 (61)
8 2ve7_A Kinetochore protein HEC 14.7 1.5E+02 0.005 28.7 4.3 17 281-297 171-187 (315)
9 2jee_A YIIU; FTSZ, septum, coi 13.0 3.4E+02 0.012 22.4 5.4 14 281-294 6-19 (81)
10 3b8o_A Lipopolysaccharide bios 12.3 3.7E+02 0.013 25.1 6.2 48 274-321 133-180 (265)
No 1
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=42.92 E-value=56 Score=27.61 Aligned_cols=60 Identities=23% Similarity=0.315 Sum_probs=37.1
Q ss_pred ccccccchhH----HHHHhHhhHHHHHHHhhhHHH------HHHhHHHHhhhhHHHHHHHHHhhcccccC
Q 011063 265 VSGFNFRLEE----RAERRKEFFSKLEEKIHAKEV------EKSNLQEKSKESQEAEIKQLRKSLTFKAT 324 (494)
Q Consensus 265 ~s~F~FrsdE----RAEKRKEFy~KLEEK~~AkE~------EK~qlqAKsKEe~EAEIKkLRKSL~FKAt 324 (494)
...|..-+.+ |..+.++|-.|+.--+.-.+. |..+.+.+-|+.=|+||.+||..|--+..
T Consensus 20 r~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~r~~ 89 (92)
T 3vp9_A 20 RQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQRDH 89 (92)
T ss_dssp TTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3445443433 666667888887655544442 22344566688889999999999865443
No 2
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=28.90 E-value=85 Score=27.25 Aligned_cols=36 Identities=31% Similarity=0.442 Sum_probs=28.6
Q ss_pred HHHHHHHhhhHHHHHHhHHHHhh------hhHHHHHHHHHhh
Q 011063 283 FSKLEEKIHAKEVEKSNLQEKSK------ESQEAEIKQLRKS 318 (494)
Q Consensus 283 y~KLEEK~~AkE~EK~qlqAKsK------Ee~EAEIKkLRKS 318 (494)
|..||.++.-.|.|-++++..++ ++-+++|.+||..
T Consensus 39 Yl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~E 80 (104)
T 3s9g_A 39 YLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAE 80 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 77899999988888888877655 5677888888753
No 3
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=28.39 E-value=1.2e+02 Score=24.70 Aligned_cols=35 Identities=14% Similarity=0.385 Sum_probs=24.4
Q ss_pred HHhhhHHHHHHhHHHHhhhhHHHHHHHHHhhc-cccc
Q 011063 288 EKIHAKEVEKSNLQEKSKESQEAEIKQLRKSL-TFKA 323 (494)
Q Consensus 288 EK~~AkE~EK~qlqAKsKEe~EAEIKkLRKSL-~FKA 323 (494)
|.+.+++.-...++.+. .+++++|+.||..| .|+.
T Consensus 33 eELr~kd~~I~eLEk~L-~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 33 EELRQRDALIDELELEL-DQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhc
Confidence 33667776666666654 45678999999888 5654
No 4
>4e29_A Chimeric WZZB chain length determinant protein; regulation of LPS O-antigen chain length, inner membran membrane protein; 1.60A {Shigella flexneri} PDB: 4e2c_A 4e2h_A 3b8p_A
Probab=26.33 E-value=1.2e+02 Score=28.94 Aligned_cols=48 Identities=10% Similarity=0.165 Sum_probs=42.5
Q ss_pred hHHHHHhHhhHHHHHHHhhhHHHHHHhHHHHhhhhHHHHHHHHHhhcc
Q 011063 273 EERAERRKEFFSKLEEKIHAKEVEKSNLQEKSKESQEAEIKQLRKSLT 320 (494)
Q Consensus 273 dERAEKRKEFy~KLEEK~~AkE~EK~qlqAKsKEe~EAEIKkLRKSL~ 320 (494)
..+.+--.+|...++.|+..++.+...++...+...+..|.+|+..|.
T Consensus 113 ~v~~el~~~l~~~i~~r~~~l~~ql~~~~~~ak~qr~~rI~rL~~AL~ 160 (248)
T 4e29_A 113 KVNQELERDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIEEALR 160 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667788999999999999999999999999999999999998664
No 5
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=20.95 E-value=1.5e+02 Score=23.53 Aligned_cols=44 Identities=32% Similarity=0.339 Sum_probs=25.1
Q ss_pred ccccchhHHHHHhHhhHHHHHHHhhhHHHHHHhHHHHhhhhHHHHHHHHHhh
Q 011063 267 GFNFRLEERAERRKEFFSKLEEKIHAKEVEKSNLQEKSKESQEAEIKQLRKS 318 (494)
Q Consensus 267 ~F~FrsdERAEKRKEFy~KLEEK~~AkE~EK~qlqAKsKEe~EAEIKkLRKS 318 (494)
...-|++.+-.|=|+..-+|-+|++-.|..- -++|.||-+|++=
T Consensus 4 SVktRse~q~~kLKq~n~~L~~kv~~Le~~c--------~e~eQEieRL~~L 47 (58)
T 3a2a_A 4 GSKTRSERQLLRLKQMNVQLAAKIQHLEFSC--------SEKEQEIERLNKL 47 (58)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Confidence 3345788888888888888888887665432 2345566666653
No 6
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=20.16 E-value=1.4e+02 Score=24.86 Aligned_cols=48 Identities=29% Similarity=0.457 Sum_probs=28.5
Q ss_pred hHHHHHhHhhHHH---HHHHhhhHHHHHHhHHHHhh-------------hhHHHHHHHHHhhcc
Q 011063 273 EERAERRKEFFSK---LEEKIHAKEVEKSNLQEKSK-------------ESQEAEIKQLRKSLT 320 (494)
Q Consensus 273 dERAEKRKEFy~K---LEEK~~AkE~EK~qlqAKsK-------------Ee~EAEIKkLRKSL~ 320 (494)
++|--+=..||+- |--|+.-.|-|+.|.+.|.| +.++++|+.|.-.|.
T Consensus 15 ee~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 15 EEKQRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 4444443345543 33455667778888877766 456667777765554
No 7
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=18.93 E-value=2.7e+02 Score=20.73 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=30.4
Q ss_pred HHhHhhHHHHHHHhhhHHHHHHhHHHHhhhhHHHHHHHHHhh
Q 011063 277 ERRKEFFSKLEEKIHAKEVEKSNLQEKSKESQEAEIKQLRKS 318 (494)
Q Consensus 277 EKRKEFy~KLEEK~~AkE~EK~qlqAKsKEe~EAEIKkLRKS 318 (494)
.+++++...||.+....+.+-..|+.+-. .-..++.+|+.-
T Consensus 18 ~rKk~~~~~Le~~~~~L~~~n~~L~~~i~-~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 18 QKRKVWVQSLEKKAEDLSSLNGQLQSEVT-LLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 56778899999999999999888887743 334456666553
No 8
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=14.67 E-value=1.5e+02 Score=28.70 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=7.5
Q ss_pred hhHHHHHHHhhhHHHHH
Q 011063 281 EFFSKLEEKIHAKEVEK 297 (494)
Q Consensus 281 EFy~KLEEK~~AkE~EK 297 (494)
||..+|++..+..++|.
T Consensus 171 e~~~~~~~~~n~~~~ei 187 (315)
T 2ve7_A 171 ELQSKLKDLFNVDAFKL 187 (315)
T ss_dssp HHHHHHHHHHTCCTTHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555444443333
No 9
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=12.99 E-value=3.4e+02 Score=22.44 Aligned_cols=14 Identities=43% Similarity=0.617 Sum_probs=10.3
Q ss_pred hhHHHHHHHhhhHH
Q 011063 281 EFFSKLEEKIHAKE 294 (494)
Q Consensus 281 EFy~KLEEK~~AkE 294 (494)
|.+.+||+|++..=
T Consensus 6 ElleqLE~KIq~av 19 (81)
T 2jee_A 6 EVFEKLEAKVQQAI 19 (81)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56788888887543
No 10
>3b8o_A Lipopolysaccharide biosynthesis protein WZZE; bacterial polysaccharide CO-polymerase, inner MEM lipopolysaccharide biosynthesis, membrane; 2.40A {Escherichia coli} SCOP: d.58.60.1
Probab=12.35 E-value=3.7e+02 Score=25.10 Aligned_cols=48 Identities=8% Similarity=0.147 Sum_probs=35.4
Q ss_pred HHHHHhHhhHHHHHHHhhhHHHHHHhHHHHhhhhHHHHHHHHHhhccc
Q 011063 274 ERAERRKEFFSKLEEKIHAKEVEKSNLQEKSKESQEAEIKQLRKSLTF 321 (494)
Q Consensus 274 ERAEKRKEFy~KLEEK~~AkE~EK~qlqAKsKEe~EAEIKkLRKSL~F 321 (494)
.+.+--.+|...++-+.....++....+.+.|+..+.+|.+|+..|..
T Consensus 133 ~~~~l~~~l~~~~~~r~~~l~~qi~~~~~~ak~~~~~~i~rl~~AL~I 180 (265)
T 3b8o_A 133 AASHLNDELKGAWAARTIQMKAQVKRQEEVAKAIYDRRMNSIEQALKI 180 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555678888888887777777777778899999999999998764
Done!