Query 011065
Match_columns 494
No_of_seqs 335 out of 2717
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 20:04:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011065.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011065hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 3.5E-62 1.2E-66 495.8 44.7 373 116-489 52-433 (434)
2 1s2m_A Putative ATP-dependent 100.0 8.1E-61 2.8E-65 482.1 43.2 379 115-493 16-394 (400)
3 2j0s_A ATP-dependent RNA helic 100.0 3.2E-60 1.1E-64 479.4 41.2 371 119-489 36-408 (410)
4 2i4i_A ATP-dependent RNA helic 100.0 7.1E-59 2.4E-63 470.5 40.9 375 117-491 12-410 (417)
5 3eiq_A Eukaryotic initiation f 100.0 6.7E-59 2.3E-63 470.2 36.2 371 120-490 40-413 (414)
6 1xti_A Probable ATP-dependent 100.0 3.5E-57 1.2E-61 454.1 42.5 372 120-491 8-385 (391)
7 3fht_A ATP-dependent RNA helic 100.0 1.6E-55 5.5E-60 445.1 41.8 370 118-490 23-406 (412)
8 1hv8_A Putative ATP-dependent 100.0 2.9E-55 9.9E-60 436.1 42.7 359 120-484 6-365 (367)
9 3pey_A ATP-dependent RNA helic 100.0 3.2E-55 1.1E-59 440.2 40.4 364 120-487 5-381 (395)
10 1fuu_A Yeast initiation factor 100.0 1.2E-57 4.2E-62 457.8 21.6 370 119-489 20-391 (394)
11 3i5x_A ATP-dependent RNA helic 100.0 1.7E-54 5.7E-59 455.1 38.0 358 126-483 78-468 (563)
12 3fmp_B ATP-dependent RNA helic 100.0 4.1E-56 1.4E-60 458.1 21.1 369 118-489 90-472 (479)
13 3sqw_A ATP-dependent RNA helic 100.0 4.8E-54 1.6E-58 452.0 37.1 358 126-483 27-417 (579)
14 2z0m_A 337AA long hypothetical 100.0 1.8E-52 6.3E-57 411.1 37.1 336 127-478 1-336 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 6.4E-52 2.2E-56 432.5 35.5 340 122-472 23-382 (591)
16 3fho_A ATP-dependent RNA helic 100.0 1.1E-52 3.8E-57 434.1 23.4 365 121-489 120-496 (508)
17 1oyw_A RECQ helicase, ATP-depe 100.0 4.4E-51 1.5E-55 422.1 33.7 340 120-474 2-353 (523)
18 3oiy_A Reverse gyrase helicase 100.0 5E-49 1.7E-53 397.8 26.1 325 131-477 10-376 (414)
19 2va8_A SSO2462, SKI2-type heli 100.0 1.4E-47 4.8E-52 412.8 37.0 351 120-485 8-428 (715)
20 2zj8_A DNA helicase, putative 100.0 1.6E-47 5.4E-52 412.3 32.5 351 121-486 2-407 (720)
21 2p6r_A Afuhel308 helicase; pro 100.0 7.7E-48 2.6E-52 413.5 27.6 331 121-465 2-389 (702)
22 3l9o_A ATP-dependent RNA helic 100.0 3.9E-47 1.4E-51 420.2 29.5 330 121-465 163-598 (1108)
23 2ykg_A Probable ATP-dependent 100.0 1.8E-47 6.3E-52 411.6 19.5 350 133-484 4-540 (696)
24 4a2p_A RIG-I, retinoic acid in 100.0 2.9E-45 9.9E-50 384.5 30.4 326 140-467 5-511 (556)
25 3tbk_A RIG-I helicase domain; 100.0 1.7E-45 5.9E-50 386.0 25.2 329 142-472 4-515 (555)
26 2xgj_A ATP-dependent RNA helic 100.0 4.3E-44 1.5E-48 392.7 36.6 320 137-472 82-508 (1010)
27 4ddu_A Reverse gyrase; topoiso 100.0 2.1E-44 7.2E-49 398.3 29.7 317 138-477 75-503 (1104)
28 4a2q_A RIG-I, retinoic acid in 100.0 6.6E-44 2.3E-48 387.7 31.3 328 138-467 244-752 (797)
29 1tf5_A Preprotein translocase 100.0 8.8E-44 3E-48 371.4 29.1 320 137-466 79-547 (844)
30 1wp9_A ATP-dependent RNA helic 100.0 2E-43 6.9E-48 363.9 30.6 321 142-467 9-478 (494)
31 1gku_B Reverse gyrase, TOP-RG; 100.0 2.1E-44 7.1E-49 398.7 22.5 324 132-478 47-468 (1054)
32 4a4z_A Antiviral helicase SKI2 100.0 3.2E-43 1.1E-47 385.9 30.7 316 142-472 39-502 (997)
33 4a2w_A RIG-I, retinoic acid in 100.0 1.5E-42 5.3E-47 380.8 30.4 326 139-466 245-751 (936)
34 4f92_B U5 small nuclear ribonu 100.0 1.1E-41 3.8E-46 389.1 32.2 342 125-472 909-1316(1724)
35 2fsf_A Preprotein translocase 100.0 6.3E-42 2.1E-46 356.3 27.3 319 139-467 72-586 (853)
36 4gl2_A Interferon-induced heli 100.0 4.9E-43 1.7E-47 377.3 18.4 318 142-463 7-517 (699)
37 2xau_A PRE-mRNA-splicing facto 100.0 3.6E-42 1.2E-46 368.8 24.8 335 117-466 69-445 (773)
38 2whx_A Serine protease/ntpase/ 100.0 9E-43 3.1E-47 364.6 15.9 323 125-485 155-502 (618)
39 1gm5_A RECG; helicase, replica 100.0 6.3E-42 2.2E-46 364.4 22.1 324 131-472 358-705 (780)
40 1nkt_A Preprotein translocase 100.0 1E-40 3.4E-45 347.6 30.3 320 138-467 108-620 (922)
41 2eyq_A TRCF, transcription-rep 100.0 4.1E-40 1.4E-44 366.5 35.1 323 125-465 586-923 (1151)
42 2jlq_A Serine protease subunit 100.0 8.4E-42 2.9E-46 347.1 18.9 287 139-463 1-310 (451)
43 4f92_B U5 small nuclear ribonu 100.0 3.3E-40 1.1E-44 377.0 30.9 328 139-472 76-481 (1724)
44 2oca_A DAR protein, ATP-depend 100.0 2.8E-41 9.6E-46 350.3 18.7 308 142-462 113-453 (510)
45 3o8b_A HCV NS3 protease/helica 100.0 2.7E-41 9.4E-46 350.0 16.0 293 142-482 217-536 (666)
46 1yks_A Genome polyprotein [con 100.0 2.8E-42 9.4E-47 349.0 6.5 298 153-487 4-325 (440)
47 2wv9_A Flavivirin protease NS2 100.0 1.1E-41 3.7E-46 358.5 7.9 306 134-476 202-548 (673)
48 2fwr_A DNA repair protein RAD2 100.0 4.9E-40 1.7E-44 337.6 19.5 291 142-464 93-454 (472)
49 2z83_A Helicase/nucleoside tri 100.0 5.2E-40 1.8E-44 334.4 13.3 281 147-464 11-313 (459)
50 2v6i_A RNA helicase; membrane, 100.0 7.2E-38 2.5E-42 316.1 17.8 269 157-462 2-288 (431)
51 3rc3_A ATP-dependent RNA helic 100.0 4E-36 1.4E-40 315.2 26.8 299 146-482 144-462 (677)
52 3h1t_A Type I site-specific re 100.0 4.4E-37 1.5E-41 324.0 19.0 327 142-484 178-579 (590)
53 3fe2_A Probable ATP-dependent 100.0 7.1E-36 2.4E-40 278.7 22.8 209 116-324 25-238 (242)
54 1vec_A ATP-dependent RNA helic 100.0 3.1E-35 1.1E-39 267.6 25.1 202 120-321 3-205 (206)
55 3ber_A Probable ATP-dependent 100.0 8.3E-35 2.8E-39 272.3 23.5 205 119-323 42-247 (249)
56 2oxc_A Probable ATP-dependent 100.0 9.5E-35 3.3E-39 268.9 23.6 210 113-323 17-228 (230)
57 1q0u_A Bstdead; DEAD protein, 100.0 3.9E-35 1.3E-39 269.5 20.6 205 120-324 4-212 (219)
58 3iuy_A Probable ATP-dependent 100.0 6.8E-35 2.3E-39 269.7 21.2 206 116-322 15-227 (228)
59 3dmq_A RNA polymerase-associat 100.0 3.3E-35 1.1E-39 323.1 22.1 329 142-476 153-625 (968)
60 3bor_A Human initiation factor 100.0 7E-35 2.4E-39 271.1 20.4 205 119-323 29-234 (237)
61 1qde_A EIF4A, translation init 100.0 3.5E-34 1.2E-38 264.2 22.6 205 119-324 13-217 (224)
62 3fmo_B ATP-dependent RNA helic 100.0 2E-34 6.8E-39 276.8 21.3 204 118-324 90-298 (300)
63 2pl3_A Probable ATP-dependent 100.0 8.7E-34 3E-38 263.7 23.2 206 119-325 24-234 (236)
64 1t6n_A Probable ATP-dependent 100.0 1.1E-33 3.6E-38 260.2 22.2 203 120-322 14-219 (220)
65 2gxq_A Heat resistant RNA depe 100.0 1.1E-33 3.8E-38 257.5 22.1 201 121-323 2-205 (207)
66 3ly5_A ATP-dependent RNA helic 100.0 6.3E-34 2.2E-38 268.4 20.3 201 120-320 52-259 (262)
67 3jux_A Protein translocase sub 100.0 2.7E-32 9.1E-37 278.4 33.4 316 139-466 73-589 (822)
68 1wrb_A DJVLGB; RNA helicase, D 100.0 6.2E-34 2.1E-38 267.5 19.6 207 118-324 21-240 (253)
69 1z63_A Helicase of the SNF2/RA 100.0 7.4E-33 2.5E-37 286.3 28.2 307 142-464 37-453 (500)
70 3dkp_A Probable ATP-dependent 100.0 2.3E-32 7.7E-37 255.6 18.3 206 119-324 24-241 (245)
71 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1.4E-31 4.8E-36 292.1 26.6 309 142-463 271-708 (1038)
72 1z3i_X Similar to RAD54-like; 100.0 5.3E-30 1.8E-34 271.1 31.7 316 142-464 55-528 (644)
73 3mwy_W Chromo domain-containin 100.0 2.3E-30 7.9E-35 280.6 28.7 327 142-476 236-698 (800)
74 2ipc_A Preprotein translocase 100.0 5.1E-28 1.8E-32 251.3 31.5 130 138-275 76-215 (997)
75 2hjv_A ATP-dependent RNA helic 100.0 1.7E-28 5.8E-33 214.0 20.7 158 327-484 5-162 (163)
76 1t5i_A C_terminal domain of A 100.0 1E-28 3.4E-33 217.2 18.3 162 329-490 3-165 (172)
77 2rb4_A ATP-dependent RNA helic 100.0 2.8E-28 9.7E-33 215.3 18.9 163 328-490 4-173 (175)
78 1fuk_A Eukaryotic initiation f 100.0 2.1E-28 7.2E-33 213.9 17.5 159 331-489 3-162 (165)
79 3eaq_A Heat resistant RNA depe 100.0 9.4E-28 3.2E-32 218.4 19.9 154 333-486 7-160 (212)
80 2p6n_A ATP-dependent RNA helic 100.0 5.5E-28 1.9E-32 215.8 17.1 178 311-489 8-187 (191)
81 2jgn_A DBX, DDX3, ATP-dependen 100.0 6.9E-28 2.4E-32 214.3 17.4 163 328-490 16-179 (185)
82 1c4o_A DNA nucleotide excision 100.0 6.5E-27 2.2E-31 247.2 27.1 114 356-470 438-556 (664)
83 3i32_A Heat resistant RNA depe 99.9 3.9E-27 1.3E-31 224.2 18.3 155 332-486 3-157 (300)
84 2d7d_A Uvrabc system protein B 99.9 1.8E-26 6.3E-31 243.6 22.3 112 356-468 444-560 (661)
85 2yjt_D ATP-dependent RNA helic 99.9 1.7E-27 5.8E-32 209.1 0.0 155 331-485 3-158 (170)
86 3b6e_A Interferon-induced heli 99.9 5E-24 1.7E-28 194.8 11.7 163 139-302 30-216 (216)
87 3llm_A ATP-dependent RNA helic 99.9 4.4E-23 1.5E-27 191.0 14.1 169 139-318 58-231 (235)
88 2vl7_A XPD; helicase, unknown 99.9 6.5E-23 2.2E-27 212.4 16.6 299 138-463 4-520 (540)
89 3crv_A XPD/RAD3 related DNA he 99.9 4.9E-20 1.7E-24 191.6 30.1 307 142-464 3-531 (551)
90 1rif_A DAR protein, DNA helica 99.9 6.1E-22 2.1E-26 188.6 12.8 157 142-310 113-269 (282)
91 2fz4_A DNA repair protein RAD2 99.8 4.5E-19 1.5E-23 163.8 15.8 137 142-305 93-230 (237)
92 4a15_A XPD helicase, ATP-depen 99.8 1.6E-17 5.6E-22 173.9 22.7 313 142-463 3-583 (620)
93 1z5z_A Helicase of the SNF2/RA 99.8 4.3E-18 1.5E-22 160.0 12.9 126 339-464 92-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.9 5.9E-09 2E-13 109.0 12.5 146 144-302 151-298 (608)
95 3upu_A ATP-dependent DNA helic 98.4 1.5E-06 5.1E-11 87.9 12.4 134 138-300 21-162 (459)
96 3e1s_A Exodeoxyribonuclease V, 98.4 1.2E-06 4.1E-11 90.6 11.4 121 142-300 189-313 (574)
97 4b3f_X DNA-binding protein smu 98.3 8.2E-07 2.8E-11 93.8 8.5 67 142-211 189-256 (646)
98 2gk6_A Regulator of nonsense t 98.2 1.5E-05 5.1E-10 83.7 14.5 70 140-211 178-247 (624)
99 2xzl_A ATP-dependent helicase 98.1 1.3E-05 4.5E-10 86.0 12.6 69 141-211 359-427 (802)
100 3lfu_A DNA helicase II; SF1 he 98.0 0.00018 6E-09 76.1 19.2 70 141-212 8-78 (647)
101 2wjy_A Regulator of nonsense t 98.0 4E-05 1.4E-09 82.3 13.8 68 142-211 356-423 (800)
102 3hgt_A HDA1 complex subunit 3; 97.7 0.00023 7.8E-09 66.9 11.6 124 339-467 105-240 (328)
103 2orw_A Thymidine kinase; TMTK, 97.4 0.00043 1.5E-08 60.3 8.0 39 157-198 3-41 (184)
104 3vkw_A Replicase large subunit 97.3 0.00083 2.8E-08 66.2 10.2 106 160-302 164-269 (446)
105 2o0j_A Terminase, DNA packagin 97.3 0.0033 1.1E-07 61.2 13.5 72 142-214 163-234 (385)
106 3ec2_A DNA replication protein 97.2 0.0011 3.8E-08 57.4 8.8 19 156-174 37-55 (180)
107 2b8t_A Thymidine kinase; deoxy 97.0 0.00045 1.5E-08 62.0 4.4 90 157-274 12-101 (223)
108 3cpe_A Terminase, DNA packagin 97.0 0.011 3.8E-07 61.4 15.6 144 142-304 163-314 (592)
109 1xx6_A Thymidine kinase; NESG, 97.0 0.0014 4.9E-08 57.2 7.1 39 157-198 8-46 (191)
110 2j9r_A Thymidine kinase; TK1, 97.0 0.0018 6E-08 57.3 7.7 37 160-199 31-67 (214)
111 3kl4_A SRP54, signal recogniti 96.9 0.0055 1.9E-07 60.5 11.3 131 159-315 99-235 (433)
112 2kjq_A DNAA-related protein; s 96.9 0.00057 1.9E-08 57.3 3.5 18 156-173 35-52 (149)
113 3te6_A Regulatory protein SIR3 96.8 0.0077 2.6E-07 57.0 10.9 25 158-183 46-70 (318)
114 1l8q_A Chromosomal replication 96.7 0.0073 2.5E-07 57.6 10.3 17 158-174 38-54 (324)
115 2chg_A Replication factor C sm 96.7 0.014 4.9E-07 51.6 11.5 39 261-300 101-139 (226)
116 2orv_A Thymidine kinase; TP4A 96.6 0.0064 2.2E-07 54.2 8.6 39 157-198 19-57 (234)
117 3co5_A Putative two-component 96.6 0.0032 1.1E-07 52.2 5.9 20 154-173 24-43 (143)
118 1a5t_A Delta prime, HOLB; zinc 96.5 0.0034 1.2E-07 60.3 6.7 34 143-176 3-43 (334)
119 3n70_A Transport activator; si 96.5 0.0062 2.1E-07 50.5 7.4 20 155-174 22-41 (145)
120 3e2i_A Thymidine kinase; Zn-bi 96.4 0.0073 2.5E-07 53.2 7.5 39 157-198 28-66 (219)
121 3dm5_A SRP54, signal recogniti 96.4 0.026 9E-07 55.7 12.2 130 159-314 102-235 (443)
122 1w4r_A Thymidine kinase; type 96.4 0.0066 2.3E-07 52.7 6.8 37 158-197 21-57 (195)
123 1uaa_A REP helicase, protein ( 96.3 0.0045 1.5E-07 65.5 6.8 69 142-212 2-71 (673)
124 2zpa_A Uncharacterized protein 96.3 0.011 3.6E-07 61.4 9.2 112 142-303 175-288 (671)
125 3bos_A Putative DNA replicatio 96.3 0.0056 1.9E-07 55.3 6.4 18 157-174 52-69 (242)
126 1d2n_A N-ethylmaleimide-sensit 96.3 0.018 6E-07 53.3 9.9 17 158-174 65-81 (272)
127 2v1u_A Cell division control p 96.3 0.0099 3.4E-07 57.9 8.3 18 157-174 44-61 (387)
128 3u61_B DNA polymerase accessor 96.2 0.036 1.2E-06 52.7 11.6 38 261-298 104-141 (324)
129 2z4s_A Chromosomal replication 96.1 0.019 6.5E-07 57.3 9.7 17 158-174 131-147 (440)
130 1pjr_A PCRA; DNA repair, DNA r 96.1 0.012 4.1E-07 62.7 8.5 69 141-211 10-79 (724)
131 3u4q_A ATP-dependent helicase/ 96.0 0.011 3.6E-07 67.0 8.0 68 142-211 10-80 (1232)
132 3syl_A Protein CBBX; photosynt 95.9 0.0077 2.6E-07 56.9 5.5 17 158-174 68-84 (309)
133 2p65_A Hypothetical protein PF 95.9 0.041 1.4E-06 47.1 9.6 18 157-174 43-60 (187)
134 1iqp_A RFCS; clamp loader, ext 95.9 0.027 9.4E-07 53.4 9.2 39 261-300 109-147 (327)
135 3pfi_A Holliday junction ATP-d 95.7 0.08 2.8E-06 50.5 12.0 17 158-174 56-72 (338)
136 1fnn_A CDC6P, cell division co 95.6 0.012 4.2E-07 57.3 5.9 16 159-174 46-61 (389)
137 2qby_B CDC6 homolog 3, cell di 95.6 0.012 4.1E-07 57.4 5.7 17 158-174 46-62 (384)
138 3h4m_A Proteasome-activating n 95.6 0.034 1.2E-06 51.7 8.6 53 119-174 13-68 (285)
139 1jbk_A CLPB protein; beta barr 95.6 0.039 1.3E-06 47.4 8.4 17 158-174 44-60 (195)
140 1njg_A DNA polymerase III subu 95.5 0.052 1.8E-06 48.6 9.3 16 159-174 47-62 (250)
141 1sxj_D Activator 1 41 kDa subu 95.5 0.026 9E-07 54.2 7.5 39 261-300 132-170 (353)
142 1sxj_E Activator 1 40 kDa subu 95.5 0.033 1.1E-06 53.6 8.2 42 260-302 132-173 (354)
143 2w58_A DNAI, primosome compone 95.5 0.04 1.4E-06 48.2 8.0 25 158-183 55-79 (202)
144 1sxj_C Activator 1 40 kDa subu 95.4 0.12 4.1E-06 49.4 11.9 38 261-299 109-146 (340)
145 2qby_A CDC6 homolog 1, cell di 95.3 0.12 4E-06 50.1 11.5 18 157-174 45-62 (386)
146 1jr3_A DNA polymerase III subu 95.1 0.053 1.8E-06 52.5 8.3 39 260-299 117-155 (373)
147 4b4t_J 26S protease regulatory 95.1 0.038 1.3E-06 53.8 7.0 55 116-173 141-198 (405)
148 3pvs_A Replication-associated 95.0 0.038 1.3E-06 55.1 7.0 16 159-174 52-67 (447)
149 4b4t_M 26S protease regulatory 94.9 0.018 6E-07 56.9 4.3 55 116-173 174-231 (434)
150 3vfd_A Spastin; ATPase, microt 94.8 0.1 3.4E-06 51.0 9.5 18 157-174 148-165 (389)
151 1g5t_A COB(I)alamin adenosyltr 94.8 0.089 3.1E-06 45.6 8.0 134 159-311 30-171 (196)
152 1sxj_B Activator 1 37 kDa subu 94.8 0.052 1.8E-06 51.3 7.2 38 262-300 107-144 (323)
153 2bjv_A PSP operon transcriptio 94.8 0.14 4.8E-06 46.9 9.8 18 156-173 28-45 (265)
154 2qgz_A Helicase loader, putati 94.7 0.12 4.2E-06 48.6 9.3 19 157-175 152-170 (308)
155 2dr3_A UPF0273 protein PH0284; 94.6 0.15 5.1E-06 45.9 9.4 37 156-195 22-58 (247)
156 1sxj_A Activator 1 95 kDa subu 94.5 0.077 2.6E-06 54.0 8.1 41 261-303 147-189 (516)
157 3eie_A Vacuolar protein sortin 94.5 0.059 2E-06 51.2 6.7 49 120-174 15-68 (322)
158 2gno_A DNA polymerase III, gam 94.5 0.089 3E-06 49.5 7.7 41 260-302 80-120 (305)
159 4b4t_H 26S protease regulatory 94.4 0.053 1.8E-06 53.6 6.1 55 116-173 202-259 (467)
160 2w0m_A SSO2452; RECA, SSPF, un 94.3 0.083 2.8E-06 47.1 7.1 37 156-195 22-58 (235)
161 4b4t_I 26S protease regulatory 94.2 0.055 1.9E-06 52.9 5.9 56 115-173 174-232 (437)
162 1xwi_A SKD1 protein; VPS4B, AA 94.2 0.068 2.3E-06 50.8 6.5 17 158-174 46-62 (322)
163 3b9p_A CG5977-PA, isoform A; A 94.2 0.096 3.3E-06 48.9 7.4 18 157-174 54-71 (297)
164 1gm5_A RECG; helicase, replica 94.1 0.2 6.8E-06 53.5 10.2 77 356-432 416-497 (780)
165 4b4t_L 26S protease subunit RP 94.0 0.051 1.7E-06 53.7 5.3 55 116-173 174-231 (437)
166 4b4t_K 26S protease regulatory 93.9 0.07 2.4E-06 52.6 5.8 55 116-173 165-222 (428)
167 2qz4_A Paraplegin; AAA+, SPG7, 93.8 0.26 8.8E-06 44.9 9.5 17 158-174 40-56 (262)
168 1hqc_A RUVB; extended AAA-ATPa 93.8 0.066 2.2E-06 50.7 5.6 17 158-174 39-55 (324)
169 3hu3_A Transitional endoplasmi 93.8 0.19 6.5E-06 50.6 9.1 42 263-304 298-349 (489)
170 1ls1_A Signal recognition part 93.8 0.36 1.2E-05 45.1 10.5 44 261-304 179-223 (295)
171 2chq_A Replication factor C sm 93.8 0.041 1.4E-06 51.9 4.0 16 159-174 40-55 (319)
172 1w5s_A Origin recognition comp 93.8 0.3 1E-05 47.7 10.4 16 159-174 52-69 (412)
173 2q6t_A DNAB replication FORK h 93.6 0.21 7.1E-06 49.8 8.9 37 157-195 200-236 (444)
174 2qp9_X Vacuolar protein sortin 93.5 0.12 4.2E-06 49.7 6.9 17 158-174 85-101 (355)
175 1n0w_A DNA repair protein RAD5 93.4 0.28 9.5E-06 44.0 8.8 40 156-195 23-65 (243)
176 3e70_C DPA, signal recognition 93.3 0.68 2.3E-05 43.8 11.5 53 262-314 211-264 (328)
177 2r6a_A DNAB helicase, replicat 93.2 0.2 7E-06 50.0 8.1 37 157-195 203-239 (454)
178 2px0_A Flagellar biosynthesis 93.1 0.27 9.3E-06 45.9 8.3 117 156-304 104-225 (296)
179 2zan_A Vacuolar protein sortin 93.1 0.1 3.6E-06 51.9 5.7 54 118-174 129-184 (444)
180 4a1f_A DNAB helicase, replicat 93.0 0.11 3.7E-06 49.5 5.4 36 157-195 46-81 (338)
181 1vma_A Cell division protein F 93.0 0.47 1.6E-05 44.4 9.8 19 158-176 105-123 (306)
182 1nlf_A Regulatory protein REPA 92.1 0.4 1.4E-05 44.2 8.1 26 154-179 27-52 (279)
183 3k1j_A LON protease, ATP-depen 92.1 1.4 4.7E-05 45.7 12.9 22 153-174 56-77 (604)
184 3oiy_A Reverse gyrase helicase 92.0 0.53 1.8E-05 46.1 9.3 78 356-433 63-147 (414)
185 2ehv_A Hypothetical protein PH 91.4 0.32 1.1E-05 43.8 6.4 23 156-178 29-51 (251)
186 2l8b_A Protein TRAI, DNA helic 91.3 0.13 4.4E-06 43.8 3.3 57 144-202 36-94 (189)
187 2ffh_A Protein (FFH); SRP54, s 91.3 1.3 4.5E-05 43.4 11.0 43 157-202 98-142 (425)
188 2v3c_C SRP54, signal recogniti 91.2 0.21 7.2E-06 49.3 5.3 35 158-195 100-134 (432)
189 2fna_A Conserved hypothetical 90.9 3.6 0.00012 38.8 13.8 38 263-302 138-178 (357)
190 2ce7_A Cell division protein F 90.9 0.18 6E-06 50.5 4.4 17 158-174 50-66 (476)
191 2j37_W Signal recognition part 90.5 1.9 6.6E-05 43.3 11.6 41 159-202 103-145 (504)
192 3m6a_A ATP-dependent protease 90.1 0.26 8.8E-06 50.4 5.0 19 156-174 107-125 (543)
193 3cf2_A TER ATPase, transitiona 89.8 0.31 1E-05 52.0 5.4 16 158-173 239-254 (806)
194 3lda_A DNA repair protein RAD5 89.8 1.1 3.9E-05 43.5 9.1 40 157-196 178-220 (400)
195 1j8m_F SRP54, signal recogniti 89.7 1.5 5.1E-05 40.8 9.5 43 157-202 98-142 (297)
196 2eyq_A TRCF, transcription-rep 89.6 1.2 4.1E-05 49.9 10.2 76 356-431 651-731 (1151)
197 3pxi_A Negative regulator of g 89.5 0.44 1.5E-05 50.9 6.4 16 159-174 523-538 (758)
198 1qvr_A CLPB protein; coiled co 89.4 1.1 3.7E-05 48.6 9.4 17 158-174 192-208 (854)
199 3ber_A Probable ATP-dependent 89.3 2.4 8.1E-05 38.2 10.4 71 357-431 111-192 (249)
200 3cmu_A Protein RECA, recombina 89.2 0.44 1.5E-05 55.7 6.3 38 157-197 1427-1464(2050)
201 2xxa_A Signal recognition part 89.1 2.8 9.4E-05 41.3 11.3 43 159-203 102-146 (433)
202 3cf2_A TER ATPase, transitiona 88.6 0.31 1.1E-05 51.9 4.3 53 118-173 472-527 (806)
203 1t6n_A Probable ATP-dependent 88.4 1.9 6.3E-05 37.8 8.9 72 358-432 83-165 (220)
204 1p9r_A General secretion pathw 88.4 0.75 2.6E-05 45.1 6.7 25 158-183 168-192 (418)
205 1ypw_A Transitional endoplasmi 88.4 1.6 5.4E-05 46.9 9.8 18 156-173 237-254 (806)
206 3b85_A Phosphate starvation-in 88.4 0.54 1.8E-05 41.3 5.1 35 140-174 5-39 (208)
207 2hjv_A ATP-dependent RNA helic 87.5 2.6 9E-05 35.0 8.8 73 189-271 36-112 (163)
208 2oap_1 GSPE-2, type II secreti 87.1 0.6 2E-05 47.2 5.2 30 144-173 246-276 (511)
209 2yhs_A FTSY, cell division pro 87.0 2.5 8.4E-05 42.2 9.4 16 159-174 295-310 (503)
210 3hjh_A Transcription-repair-co 86.9 2.6 9E-05 42.1 9.7 51 157-213 14-64 (483)
211 3fe2_A Probable ATP-dependent 86.7 2.7 9.4E-05 37.4 9.1 71 357-431 102-182 (242)
212 2v1x_A ATP-dependent DNA helic 86.7 2.1 7.2E-05 44.1 9.1 60 356-415 83-144 (591)
213 3jvv_A Twitching mobility prot 86.7 1.1 3.8E-05 42.9 6.6 26 158-184 124-149 (356)
214 2oxc_A Probable ATP-dependent 86.5 1.6 5.6E-05 38.6 7.3 70 357-431 92-172 (230)
215 1oyw_A RECQ helicase, ATP-depe 86.5 1.5 5.2E-05 44.5 7.9 74 357-430 65-144 (523)
216 2gza_A Type IV secretion syste 86.4 0.68 2.3E-05 44.5 5.0 20 154-173 172-191 (361)
217 2rb4_A ATP-dependent RNA helic 86.4 3.5 0.00012 34.6 9.1 73 188-270 34-110 (175)
218 4ddu_A Reverse gyrase; topoiso 86.4 2 6.7E-05 47.9 9.2 78 356-433 120-204 (1104)
219 4f4c_A Multidrug resistance pr 86.1 1.3 4.3E-05 50.5 7.7 41 260-300 1233-1273(1321)
220 1kgd_A CASK, peripheral plasma 85.5 0.45 1.5E-05 40.6 2.9 19 156-174 4-22 (180)
221 1fuk_A Eukaryotic initiation f 85.4 4.7 0.00016 33.4 9.3 73 189-271 31-107 (165)
222 1e9r_A Conjugal transfer prote 85.2 0.63 2.2E-05 46.0 4.2 43 156-201 52-94 (437)
223 3b5x_A Lipid A export ATP-bind 85.2 1.9 6.5E-05 44.4 7.9 40 260-300 496-535 (582)
224 2pt7_A CAG-ALFA; ATPase, prote 84.6 0.83 2.8E-05 43.3 4.5 19 155-173 169-187 (330)
225 1t5i_A C_terminal domain of A 84.5 4.1 0.00014 34.2 8.6 73 189-271 32-108 (172)
226 3vaa_A Shikimate kinase, SK; s 84.1 0.59 2E-05 40.6 3.0 19 156-174 24-42 (199)
227 2ewv_A Twitching motility prot 84.0 0.65 2.2E-05 44.9 3.6 18 156-173 135-152 (372)
228 2zts_A Putative uncharacterize 83.9 0.81 2.8E-05 41.0 4.0 37 157-195 30-66 (251)
229 1lvg_A Guanylate kinase, GMP k 83.9 0.62 2.1E-05 40.5 3.1 19 156-174 3-21 (198)
230 3eaq_A Heat resistant RNA depe 83.8 4.7 0.00016 35.2 8.9 70 189-268 32-105 (212)
231 2eyu_A Twitching motility prot 83.8 0.47 1.6E-05 43.3 2.4 19 155-173 23-41 (261)
232 3bh0_A DNAB-like replicative h 83.8 1.6 5.4E-05 41.0 6.1 36 157-195 68-103 (315)
233 3tau_A Guanylate kinase, GMP k 83.3 0.66 2.2E-05 40.6 3.0 19 156-174 7-25 (208)
234 2qor_A Guanylate kinase; phosp 82.9 0.63 2.2E-05 40.5 2.7 20 155-174 10-29 (204)
235 3lw7_A Adenylate kinase relate 82.7 0.53 1.8E-05 39.5 2.1 15 160-174 4-18 (179)
236 1zp6_A Hypothetical protein AT 82.7 0.39 1.3E-05 41.3 1.3 18 156-173 8-25 (191)
237 3iij_A Coilin-interacting nucl 82.6 0.64 2.2E-05 39.5 2.6 20 156-175 10-29 (180)
238 3tr0_A Guanylate kinase, GMP k 82.4 0.7 2.4E-05 40.1 2.9 19 156-174 6-24 (205)
239 3bor_A Human initiation factor 82.4 2.7 9.3E-05 37.4 6.9 72 357-431 98-179 (237)
240 1qhx_A CPT, protein (chloramph 82.3 0.58 2E-05 39.6 2.2 16 158-173 4-19 (178)
241 1vec_A ATP-dependent RNA helic 82.2 4.9 0.00017 34.5 8.4 71 357-431 71-152 (206)
242 2j41_A Guanylate kinase; GMP, 82.2 0.73 2.5E-05 40.0 2.9 19 156-174 5-23 (207)
243 3trf_A Shikimate kinase, SK; a 82.1 0.78 2.7E-05 39.1 3.0 19 157-175 5-23 (185)
244 2ius_A DNA translocase FTSK; n 82.0 1.5 5.2E-05 44.1 5.4 27 156-182 166-192 (512)
245 2p6n_A ATP-dependent RNA helic 81.9 11 0.00037 32.2 10.3 71 190-270 56-130 (191)
246 3a8t_A Adenylate isopentenyltr 81.9 0.71 2.4E-05 43.7 2.8 16 159-174 42-57 (339)
247 1kht_A Adenylate kinase; phosp 81.9 0.63 2.1E-05 39.8 2.3 18 157-174 3-20 (192)
248 1ofh_A ATP-dependent HSL prote 81.7 3 0.0001 38.6 7.2 18 157-174 50-67 (310)
249 1xti_A Probable ATP-dependent 81.7 4.7 0.00016 38.6 8.9 72 357-431 76-158 (391)
250 3iuy_A Probable ATP-dependent 81.6 3.4 0.00012 36.3 7.2 72 356-431 93-173 (228)
251 2i1q_A DNA repair and recombin 81.3 1.9 6.5E-05 40.5 5.7 23 158-180 99-121 (322)
252 3ney_A 55 kDa erythrocyte memb 81.3 0.85 2.9E-05 39.6 2.9 18 156-173 18-35 (197)
253 2qmh_A HPR kinase/phosphorylas 81.2 0.75 2.6E-05 39.9 2.5 17 157-173 34-50 (205)
254 2ze6_A Isopentenyl transferase 81.1 0.8 2.7E-05 41.5 2.8 15 160-174 4-18 (253)
255 2gxq_A Heat resistant RNA depe 80.9 5.8 0.0002 34.0 8.4 71 357-431 72-150 (207)
256 3i5x_A ATP-dependent RNA helic 80.9 16 0.00056 36.9 13.1 90 175-271 326-419 (563)
257 3exa_A TRNA delta(2)-isopenten 80.9 0.75 2.6E-05 43.0 2.5 16 159-174 5-20 (322)
258 3a00_A Guanylate kinase, GMP k 80.6 1 3.5E-05 38.5 3.2 16 158-173 2-17 (186)
259 4gp7_A Metallophosphoesterase; 80.5 0.63 2.2E-05 39.3 1.8 19 156-174 8-26 (171)
260 1kag_A SKI, shikimate kinase I 80.5 1.1 3.6E-05 37.7 3.2 18 157-174 4-21 (173)
261 1ly1_A Polynucleotide kinase; 80.2 0.73 2.5E-05 38.9 2.1 15 160-174 5-19 (181)
262 2cvh_A DNA repair and recombin 80.1 0.83 2.8E-05 40.0 2.5 33 157-195 20-52 (220)
263 3foz_A TRNA delta(2)-isopenten 80.0 0.92 3.1E-05 42.3 2.8 15 160-174 13-27 (316)
264 1z6g_A Guanylate kinase; struc 80.0 1.1 3.7E-05 39.6 3.3 18 156-173 22-39 (218)
265 1znw_A Guanylate kinase, GMP k 79.9 0.81 2.8E-05 40.0 2.4 21 153-173 16-36 (207)
266 1s96_A Guanylate kinase, GMP k 79.9 0.81 2.8E-05 40.5 2.4 20 154-173 13-32 (219)
267 2z43_A DNA repair and recombin 79.7 2.3 7.9E-05 40.0 5.7 40 157-196 107-149 (324)
268 1nij_A Hypothetical protein YJ 79.5 1.3 4.4E-05 41.7 3.8 14 160-173 7-20 (318)
269 2jgn_A DBX, DDX3, ATP-dependen 79.5 6.1 0.00021 33.5 7.9 89 167-269 29-121 (185)
270 3nbx_X ATPase RAVA; AAA+ ATPas 79.5 1.1 3.6E-05 45.2 3.3 26 148-173 32-57 (500)
271 4ag6_A VIRB4 ATPase, type IV s 79.5 1.8 6.1E-05 42.0 4.9 42 156-200 34-75 (392)
272 3cm0_A Adenylate kinase; ATP-b 79.3 0.78 2.7E-05 39.1 2.0 19 157-175 4-22 (186)
273 4akg_A Glutathione S-transfera 79.3 4 0.00014 49.5 8.5 66 129-197 892-963 (2695)
274 3kb2_A SPBC2 prophage-derived 79.2 1.1 3.6E-05 37.5 2.8 16 159-174 3-18 (173)
275 1wrb_A DJVLGB; RNA helicase, D 78.9 6.6 0.00023 35.1 8.3 71 357-431 100-180 (253)
276 1ex7_A Guanylate kinase; subst 78.7 1.1 3.6E-05 38.6 2.6 16 158-173 2-17 (186)
277 1y63_A LMAJ004144AAA protein; 78.6 1.2 4.1E-05 38.0 3.0 18 157-174 10-27 (184)
278 2r44_A Uncharacterized protein 78.5 1.2 4.1E-05 42.0 3.2 23 152-174 41-63 (331)
279 3sqw_A ATP-dependent RNA helic 78.3 22 0.00077 36.2 13.1 89 177-272 277-369 (579)
280 1knq_A Gluconate kinase; ALFA/ 78.1 0.83 2.8E-05 38.5 1.8 18 157-174 8-25 (175)
281 3bgw_A DNAB-like replicative h 78.0 2.9 0.0001 41.3 6.0 36 157-195 197-232 (444)
282 3u4q_B ATP-dependent helicase/ 77.9 1.5 5.1E-05 49.4 4.2 40 160-199 4-43 (1166)
283 1qde_A EIF4A, translation init 77.9 3.3 0.00011 36.3 5.8 70 357-431 82-161 (224)
284 4eun_A Thermoresistant glucoki 77.8 1.3 4.5E-05 38.3 3.0 18 157-174 29-46 (200)
285 1wp9_A ATP-dependent RNA helic 77.8 8.4 0.00029 37.8 9.5 71 356-431 51-131 (494)
286 3crm_A TRNA delta(2)-isopenten 77.8 1.2 4E-05 42.0 2.8 17 159-175 7-23 (323)
287 2zr9_A Protein RECA, recombina 77.8 1.9 6.5E-05 41.1 4.4 36 157-195 61-96 (349)
288 3nwj_A ATSK2; P loop, shikimat 77.5 1.6 5.5E-05 39.4 3.6 20 155-174 46-65 (250)
289 3nwn_A Kinesin-like protein KI 77.4 1.6 5.5E-05 41.7 3.7 25 149-173 95-121 (359)
290 1xjc_A MOBB protein homolog; s 77.3 2.6 9E-05 35.4 4.6 26 160-186 7-32 (169)
291 3sr0_A Adenylate kinase; phosp 77.0 1.3 4.5E-05 38.7 2.8 17 160-176 3-19 (206)
292 1rj9_A FTSY, signal recognitio 76.8 2.2 7.6E-05 39.8 4.4 18 157-174 102-119 (304)
293 3qf4_A ABC transporter, ATP-bi 76.7 2.6 8.9E-05 43.4 5.4 38 260-297 495-532 (587)
294 2c95_A Adenylate kinase 1; tra 76.5 1.6 5.5E-05 37.3 3.3 19 156-174 8-26 (196)
295 1bg2_A Kinesin; motor protein, 76.5 1.8 6.1E-05 40.8 3.7 25 149-173 68-94 (325)
296 4a82_A Cystic fibrosis transme 76.5 2.6 8.9E-05 43.3 5.3 38 261-299 494-531 (578)
297 3hws_A ATP-dependent CLP prote 76.3 2.2 7.5E-05 40.9 4.5 18 157-174 51-68 (363)
298 1np6_A Molybdopterin-guanine d 76.3 3.4 0.00012 34.9 5.2 38 159-197 8-45 (174)
299 2rhm_A Putative kinase; P-loop 76.3 1.1 3.8E-05 38.3 2.1 17 158-174 6-22 (193)
300 1tev_A UMP-CMP kinase; ploop, 76.2 1 3.4E-05 38.6 1.8 18 158-175 4-21 (196)
301 3d3q_A TRNA delta(2)-isopenten 76.1 1.4 4.7E-05 41.8 2.8 17 159-175 9-25 (340)
302 3umf_A Adenylate kinase; rossm 76.0 1.5 5.1E-05 38.7 2.9 19 158-176 30-48 (217)
303 2v54_A DTMP kinase, thymidylat 76.0 1.3 4.5E-05 38.2 2.5 18 157-174 4-21 (204)
304 1tue_A Replication protein E1; 75.9 3.6 0.00012 35.8 5.1 44 129-174 28-75 (212)
305 1lv7_A FTSH; alpha/beta domain 75.9 1.1 3.9E-05 40.4 2.2 17 158-174 46-62 (257)
306 1u94_A RECA protein, recombina 75.8 2.3 8E-05 40.6 4.4 37 157-196 63-99 (356)
307 2bdt_A BH3686; alpha-beta prot 75.7 1.2 4.1E-05 38.1 2.1 16 159-174 4-19 (189)
308 3dc4_A Kinesin-like protein NO 75.7 1.8 6.2E-05 41.1 3.5 24 150-173 86-111 (344)
309 3ly5_A ATP-dependent RNA helic 75.6 11 0.00039 33.9 8.9 71 357-431 126-207 (262)
310 1zd8_A GTP:AMP phosphotransfer 75.5 1.6 5.4E-05 38.6 3.0 17 158-174 8-24 (227)
311 2db3_A ATP-dependent RNA helic 75.5 9.9 0.00034 37.2 9.1 71 357-431 129-209 (434)
312 2iut_A DNA translocase FTSK; n 75.4 3 0.0001 42.4 5.3 41 157-197 214-255 (574)
313 3t61_A Gluconokinase; PSI-biol 75.4 1.5 5.3E-05 37.8 2.8 16 159-174 20-35 (202)
314 1nks_A Adenylate kinase; therm 75.4 1.2 4.1E-05 38.0 2.1 15 160-174 4-18 (194)
315 1ojl_A Transcriptional regulat 75.4 1.8 6.1E-05 40.4 3.4 19 156-174 24-42 (304)
316 1cr0_A DNA primase/helicase; R 75.3 2.3 7.9E-05 39.3 4.2 38 156-195 34-71 (296)
317 3uie_A Adenylyl-sulfate kinase 75.1 1.4 4.9E-05 38.1 2.5 18 157-174 25-42 (200)
318 3p32_A Probable GTPase RV1496/ 75.1 46 0.0016 31.4 13.5 18 159-176 81-98 (355)
319 3cf0_A Transitional endoplasmi 75.1 1.6 5.4E-05 40.7 2.9 18 157-174 49-66 (301)
320 3vkg_A Dynein heavy chain, cyt 75.0 5.7 0.00019 48.8 8.2 71 127-199 873-948 (3245)
321 1v5w_A DMC1, meiotic recombina 74.9 2.6 8.7E-05 40.1 4.4 48 150-197 110-165 (343)
322 2vvg_A Kinesin-2; motor protei 74.8 2.1 7.1E-05 40.8 3.7 24 150-173 81-106 (350)
323 3b6u_A Kinesin-like protein KI 74.8 2.1 7.1E-05 41.1 3.7 25 149-173 92-118 (372)
324 3io5_A Recombination and repai 74.8 3 0.0001 39.0 4.7 41 159-200 30-70 (333)
325 2h58_A Kinesin-like protein KI 74.8 2.1 7.2E-05 40.4 3.7 25 149-173 71-97 (330)
326 1v8k_A Kinesin-like protein KI 74.7 2 7E-05 41.7 3.7 24 150-173 146-171 (410)
327 1t5c_A CENP-E protein, centrom 74.6 2.1 7.3E-05 40.7 3.7 25 149-173 68-94 (349)
328 3hr8_A Protein RECA; alpha and 74.5 2.4 8.2E-05 40.5 4.1 38 157-197 61-98 (356)
329 1zuh_A Shikimate kinase; alpha 74.5 1.7 6E-05 36.2 2.8 18 158-175 8-25 (168)
330 1gvn_B Zeta; postsegregational 74.5 1.3 4.4E-05 41.1 2.1 16 159-174 35-50 (287)
331 2plr_A DTMP kinase, probable t 74.5 1.1 3.8E-05 38.9 1.7 18 157-174 4-21 (213)
332 2y65_A Kinesin, kinesin heavy 74.5 2.1 7.3E-05 40.9 3.7 24 150-173 76-101 (365)
333 4a14_A Kinesin, kinesin-like p 74.5 2.1 7.3E-05 40.6 3.7 24 150-173 75-100 (344)
334 3gbj_A KIF13B protein; kinesin 74.5 2.1 7.3E-05 40.8 3.7 25 149-173 83-109 (354)
335 3lnc_A Guanylate kinase, GMP k 74.4 1.3 4.5E-05 39.3 2.2 19 156-174 26-44 (231)
336 3c8u_A Fructokinase; YP_612366 74.4 1.2 4.1E-05 38.9 1.8 17 157-173 22-38 (208)
337 1goj_A Kinesin, kinesin heavy 74.4 2.1 7.2E-05 40.8 3.6 24 150-173 72-97 (355)
338 3fb4_A Adenylate kinase; psych 74.2 1.7 5.8E-05 38.0 2.8 16 160-175 3-18 (216)
339 2nr8_A Kinesin-like protein KI 74.2 2.2 7.5E-05 40.7 3.7 25 149-173 94-120 (358)
340 3lre_A Kinesin-like protein KI 74.1 2.2 7.4E-05 40.8 3.6 24 150-173 97-122 (355)
341 2pl3_A Probable ATP-dependent 74.0 11 0.00039 33.0 8.4 71 356-431 96-177 (236)
342 1via_A Shikimate kinase; struc 73.8 2 6.8E-05 36.1 3.1 16 159-174 6-21 (175)
343 3tqc_A Pantothenate kinase; bi 73.8 4.7 0.00016 37.9 5.8 15 160-174 95-109 (321)
344 1f9v_A Kinesin-like protein KA 73.8 2.1 7.3E-05 40.7 3.5 26 149-174 75-102 (347)
345 2zfi_A Kinesin-like protein KI 73.7 2.3 7.8E-05 40.8 3.7 25 149-173 80-106 (366)
346 3eph_A TRNA isopentenyltransfe 73.6 1.7 5.8E-05 42.1 2.8 16 160-175 5-20 (409)
347 4etp_A Kinesin-like protein KA 73.6 2.3 7.8E-05 41.4 3.7 25 150-174 132-158 (403)
348 1x88_A Kinesin-like protein KI 73.5 2.2 7.4E-05 40.9 3.5 25 149-173 79-105 (359)
349 3uk6_A RUVB-like 2; hexameric 73.5 1.8 6E-05 41.5 2.9 17 158-174 71-87 (368)
350 3t0q_A AGR253WP; kinesin, alph 73.4 2.2 7.4E-05 40.7 3.5 26 149-174 76-103 (349)
351 2qt1_A Nicotinamide riboside k 73.4 1 3.5E-05 39.2 1.1 18 156-173 20-37 (207)
352 2bwj_A Adenylate kinase 5; pho 73.3 2.2 7.4E-05 36.6 3.3 18 157-174 12-29 (199)
353 3dl0_A Adenylate kinase; phosp 73.2 1.9 6.3E-05 37.7 2.8 16 160-175 3-18 (216)
354 1aky_A Adenylate kinase; ATP:A 73.1 2 7E-05 37.7 3.1 18 158-175 5-22 (220)
355 1m7g_A Adenylylsulfate kinase; 73.0 1.7 5.8E-05 38.0 2.5 20 155-174 23-42 (211)
356 2pez_A Bifunctional 3'-phospho 72.9 1.4 4.8E-05 37.3 1.8 18 157-174 5-22 (179)
357 2wbe_C Bipolar kinesin KRP-130 72.9 2.3 7.9E-05 40.9 3.5 25 149-173 91-117 (373)
358 3i32_A Heat resistant RNA depe 72.8 9.8 0.00034 35.2 7.8 73 189-271 29-105 (300)
359 4f4c_A Multidrug resistance pr 72.8 0.83 2.8E-05 52.0 0.4 41 260-300 570-610 (1321)
360 1ye8_A Protein THEP1, hypothet 72.7 2 7E-05 36.4 2.8 16 159-174 2-17 (178)
361 2i4i_A ATP-dependent RNA helic 72.7 17 0.00059 34.9 10.1 72 187-268 275-350 (417)
362 3kta_A Chromosome segregation 72.7 2.1 7.2E-05 36.2 3.0 16 159-174 28-43 (182)
363 1qf9_A UMP/CMP kinase, protein 72.7 2 6.7E-05 36.6 2.8 16 159-174 8-23 (194)
364 1zak_A Adenylate kinase; ATP:A 72.7 2.1 7.2E-05 37.6 3.0 18 158-175 6-23 (222)
365 3b9q_A Chloroplast SRP recepto 72.6 2.9 9.8E-05 39.0 4.1 18 157-174 100-117 (302)
366 2yvu_A Probable adenylyl-sulfa 72.4 3.2 0.00011 35.2 4.1 19 157-175 13-31 (186)
367 2heh_A KIF2C protein; kinesin, 72.4 2.4 8.2E-05 40.9 3.5 25 150-174 126-152 (387)
368 3tif_A Uncharacterized ABC tra 72.2 1.4 4.7E-05 39.4 1.7 18 156-173 30-47 (235)
369 1cke_A CK, MSSA, protein (cyti 72.2 2 6.9E-05 37.8 2.8 18 158-175 6-23 (227)
370 1e6c_A Shikimate kinase; phosp 72.2 2.3 7.9E-05 35.5 3.1 16 159-174 4-19 (173)
371 1ukz_A Uridylate kinase; trans 72.1 1.6 5.5E-05 37.7 2.1 15 160-174 18-32 (203)
372 4a2p_A RIG-I, retinoic acid in 72.1 9.3 0.00032 38.5 8.2 71 357-431 55-136 (556)
373 1u0j_A DNA replication protein 72.0 7.2 0.00025 35.4 6.4 44 129-175 73-122 (267)
374 3cob_A Kinesin heavy chain-lik 72.0 2.2 7.6E-05 40.9 3.2 24 150-173 71-96 (369)
375 2pt5_A Shikimate kinase, SK; a 71.8 1.7 5.8E-05 36.1 2.1 16 159-174 2-17 (168)
376 2iyv_A Shikimate kinase, SK; t 71.8 2.5 8.6E-05 35.8 3.2 16 159-174 4-19 (184)
377 3t15_A Ribulose bisphosphate c 71.7 2 6.9E-05 39.8 2.8 16 158-173 37-52 (293)
378 3nh6_A ATP-binding cassette SU 71.7 1.6 5.4E-05 40.8 2.0 18 156-173 79-96 (306)
379 3cmw_A Protein RECA, recombina 71.6 9.8 0.00033 44.0 8.7 41 158-201 1432-1472(1706)
380 2i3b_A HCR-ntpase, human cance 71.6 2.5 8.6E-05 36.3 3.2 42 260-304 103-146 (189)
381 3u06_A Protein claret segregat 71.6 2.7 9.3E-05 40.9 3.7 25 149-173 129-155 (412)
382 2jaq_A Deoxyguanosine kinase; 71.5 2.2 7.4E-05 36.7 2.8 15 160-174 3-17 (205)
383 2z0h_A DTMP kinase, thymidylat 71.5 1.7 5.9E-05 37.2 2.1 16 160-175 3-18 (197)
384 1f2t_A RAD50 ABC-ATPase; DNA d 71.4 2.5 8.5E-05 34.7 3.0 14 160-173 26-39 (149)
385 2og2_A Putative signal recogni 71.4 2.6 8.9E-05 40.3 3.5 18 157-174 157-174 (359)
386 2cdn_A Adenylate kinase; phosp 71.4 2.2 7.5E-05 36.8 2.8 16 159-174 22-37 (201)
387 1xp8_A RECA protein, recombina 71.4 3.5 0.00012 39.6 4.4 37 157-196 74-110 (366)
388 1fuu_A Yeast initiation factor 71.3 11 0.00038 35.9 8.2 71 356-431 88-168 (394)
389 2r2a_A Uncharacterized protein 71.2 2.5 8.7E-05 36.6 3.1 21 160-180 8-28 (199)
390 3bfn_A Kinesin-like protein KI 70.9 2.4 8.2E-05 40.9 3.1 23 151-173 91-115 (388)
391 1ixz_A ATP-dependent metallopr 70.8 2.2 7.7E-05 38.3 2.8 15 159-173 51-65 (254)
392 1e4v_A Adenylate kinase; trans 70.7 2.3 7.8E-05 37.2 2.8 16 160-175 3-18 (214)
393 2owm_A Nckin3-434, related to 70.7 2.9 9.9E-05 41.2 3.7 24 150-173 128-153 (443)
394 2vli_A Antibiotic resistance p 70.6 1.4 5E-05 37.2 1.4 19 157-175 5-23 (183)
395 1gku_B Reverse gyrase, TOP-RG; 70.6 13 0.00046 41.0 9.4 74 356-431 98-181 (1054)
396 3asz_A Uridine kinase; cytidin 70.4 2.1 7.3E-05 37.2 2.5 17 158-174 7-23 (211)
397 4a74_A DNA repair and recombin 70.2 2.1 7.2E-05 37.6 2.5 21 156-176 24-44 (231)
398 1um8_A ATP-dependent CLP prote 70.1 2.6 8.9E-05 40.5 3.3 18 157-174 72-89 (376)
399 1zu4_A FTSY; GTPase, signal re 70.1 3.5 0.00012 38.7 4.0 20 157-176 105-124 (320)
400 1ak2_A Adenylate kinase isoenz 69.9 2.6 9E-05 37.4 3.1 18 158-175 17-34 (233)
401 4fcw_A Chaperone protein CLPB; 69.9 2.9 9.9E-05 38.8 3.5 16 159-174 49-64 (311)
402 2cbz_A Multidrug resistance-as 69.8 1.7 5.8E-05 38.9 1.7 18 156-173 30-47 (237)
403 3be4_A Adenylate kinase; malar 69.8 2.7 9.2E-05 36.8 3.1 18 158-175 6-23 (217)
404 2wwf_A Thymidilate kinase, put 69.7 2.6 9E-05 36.5 3.0 19 157-175 10-28 (212)
405 1jjv_A Dephospho-COA kinase; P 69.6 2.5 8.6E-05 36.5 2.8 15 160-174 5-19 (206)
406 2v9p_A Replication protein E1; 69.6 2.3 7.8E-05 39.7 2.6 18 156-173 125-142 (305)
407 1in4_A RUVB, holliday junction 69.5 2.6 8.9E-05 39.9 3.1 16 158-173 52-67 (334)
408 1sgw_A Putative ABC transporte 69.4 1.9 6.4E-05 37.9 1.9 18 156-173 34-51 (214)
409 4tmk_A Protein (thymidylate ki 69.3 8.3 0.00028 33.7 6.1 30 156-186 2-31 (213)
410 2xb4_A Adenylate kinase; ATP-b 69.3 2.6 8.8E-05 37.2 2.8 16 160-175 3-18 (223)
411 2rep_A Kinesin-like protein KI 69.2 2.8 9.7E-05 40.2 3.2 24 150-173 107-132 (376)
412 2if2_A Dephospho-COA kinase; a 69.1 2.6 8.9E-05 36.3 2.8 16 159-174 3-18 (204)
413 2pbr_A DTMP kinase, thymidylat 69.0 2.7 9.2E-05 35.8 2.8 15 160-174 3-17 (195)
414 1nn5_A Similar to deoxythymidy 68.9 2.7 9.2E-05 36.5 2.9 19 157-175 9-27 (215)
415 2r8r_A Sensor protein; KDPD, P 68.9 5 0.00017 35.5 4.5 23 159-181 8-30 (228)
416 3a4m_A L-seryl-tRNA(SEC) kinas 68.8 2.1 7.1E-05 38.9 2.1 16 159-174 6-21 (260)
417 3tlx_A Adenylate kinase 2; str 68.8 2.7 9.1E-05 37.7 2.8 18 158-175 30-47 (243)
418 2bbw_A Adenylate kinase 4, AK4 68.7 2.7 9.1E-05 37.7 2.8 17 158-174 28-44 (246)
419 2x8a_A Nuclear valosin-contain 68.7 2.1 7.1E-05 39.3 2.1 15 159-173 46-60 (274)
420 3qf7_A RAD50; ABC-ATPase, ATPa 68.5 2.9 9.8E-05 40.2 3.1 17 159-175 25-41 (365)
421 1pzn_A RAD51, DNA repair and r 68.3 3.5 0.00012 39.3 3.7 38 158-195 132-172 (349)
422 1w36_B RECB, exodeoxyribonucle 67.9 7.6 0.00026 43.6 6.9 52 159-210 18-78 (1180)
423 3bs4_A Uncharacterized protein 67.9 5.3 0.00018 36.2 4.6 51 157-211 21-71 (260)
424 2pcj_A ABC transporter, lipopr 67.8 2.2 7.4E-05 37.8 2.0 18 156-173 29-46 (224)
425 3d8b_A Fidgetin-like protein 1 67.7 2.7 9.2E-05 40.2 2.8 18 157-174 117-134 (357)
426 1c9k_A COBU, adenosylcobinamid 67.5 4.1 0.00014 34.6 3.6 32 160-198 2-33 (180)
427 1uf9_A TT1252 protein; P-loop, 67.5 3 0.0001 35.8 2.8 15 160-174 11-25 (203)
428 2r62_A Cell division protease 67.4 1.6 5.6E-05 39.6 1.1 17 158-174 45-61 (268)
429 1iy2_A ATP-dependent metallopr 67.4 2.9 9.9E-05 38.3 2.8 15 159-173 75-89 (278)
430 2f1r_A Molybdopterin-guanine d 67.1 1.7 5.8E-05 36.7 1.1 16 159-174 4-19 (171)
431 3gfo_A Cobalt import ATP-bindi 67.1 2.5 8.5E-05 38.8 2.3 18 156-173 33-50 (275)
432 2c9o_A RUVB-like 1; hexameric 66.7 3 0.0001 41.4 3.0 17 158-174 64-80 (456)
433 2ghi_A Transport protein; mult 66.7 2.1 7.2E-05 38.9 1.7 18 156-173 45-62 (260)
434 4e22_A Cytidylate kinase; P-lo 66.7 3.3 0.00011 37.4 3.0 18 157-174 27-44 (252)
435 1q57_A DNA primase/helicase; d 66.7 5 0.00017 40.3 4.7 37 157-195 242-278 (503)
436 1hv8_A Putative ATP-dependent 66.7 24 0.00081 33.0 9.4 71 356-431 73-153 (367)
437 2pze_A Cystic fibrosis transme 66.6 2.7 9.1E-05 37.4 2.3 18 156-173 33-50 (229)
438 1yks_A Genome polyprotein [con 66.6 9.6 0.00033 37.5 6.6 67 189-267 178-245 (440)
439 3fht_A ATP-dependent RNA helic 66.6 18 0.00063 34.5 8.7 72 189-270 267-342 (412)
440 4g1u_C Hemin import ATP-bindin 66.5 2.1 7.2E-05 39.1 1.7 18 156-173 36-53 (266)
441 3ice_A Transcription terminati 66.4 6.5 0.00022 37.9 5.0 28 148-175 162-192 (422)
442 1vht_A Dephospho-COA kinase; s 66.3 2.5 8.7E-05 36.9 2.1 16 159-174 6-21 (218)
443 2ff7_A Alpha-hemolysin translo 66.3 2.7 9.2E-05 37.8 2.3 18 156-173 34-51 (247)
444 3g5u_A MCG1178, multidrug resi 65.8 4.8 0.00016 45.6 4.7 38 260-297 542-579 (1284)
445 1b0u_A Histidine permease; ABC 65.7 2.3 7.8E-05 38.7 1.7 18 156-173 31-48 (262)
446 3dkp_A Probable ATP-dependent 65.7 6 0.0002 35.1 4.6 72 358-432 99-182 (245)
447 1g8p_A Magnesium-chelatase 38 65.6 2 6.7E-05 40.7 1.3 18 157-174 45-62 (350)
448 3fmo_B ATP-dependent RNA helic 65.5 5.1 0.00017 37.2 4.1 68 358-432 163-242 (300)
449 2p5t_B PEZT; postsegregational 65.5 2 6.9E-05 38.8 1.3 16 159-174 34-49 (253)
450 2l82_A Designed protein OR32; 65.5 28 0.00096 26.1 7.2 50 360-409 5-54 (162)
451 1g6h_A High-affinity branched- 65.5 2.8 9.7E-05 37.9 2.3 18 156-173 32-49 (257)
452 1ji0_A ABC transporter; ATP bi 65.3 2.9 9.9E-05 37.4 2.3 18 156-173 31-48 (240)
453 1mv5_A LMRA, multidrug resista 65.2 2 6.8E-05 38.6 1.2 18 156-173 27-44 (243)
454 1htw_A HI0065; nucleotide-bind 65.0 2.8 9.7E-05 34.8 2.0 18 156-173 32-49 (158)
455 3pey_A ATP-dependent RNA helic 64.8 92 0.0032 29.1 14.2 77 187-273 242-322 (395)
456 3auy_A DNA double-strand break 64.7 2.7 9.2E-05 40.5 2.1 15 160-174 28-42 (371)
457 4dzz_A Plasmid partitioning pr 64.5 14 0.00048 31.4 6.7 31 239-272 55-85 (206)
458 4edh_A DTMP kinase, thymidylat 64.4 6.2 0.00021 34.5 4.3 30 155-185 4-33 (213)
459 1vpl_A ABC transporter, ATP-bi 64.3 2.5 8.6E-05 38.3 1.7 18 156-173 40-57 (256)
460 1s2m_A Putative ATP-dependent 64.2 20 0.00069 34.2 8.4 71 357-431 89-169 (400)
461 1gtv_A TMK, thymidylate kinase 64.2 2.1 7.2E-05 37.2 1.2 15 160-174 3-17 (214)
462 3tbk_A RIG-I helicase domain; 64.1 11 0.00037 38.0 6.7 71 357-431 52-133 (555)
463 2ixe_A Antigen peptide transpo 64.0 2.6 8.7E-05 38.6 1.7 18 156-173 44-61 (271)
464 2olj_A Amino acid ABC transpor 64.0 2.6 8.8E-05 38.4 1.7 18 156-173 49-66 (263)
465 2yz2_A Putative ABC transporte 63.8 2.6 8.9E-05 38.4 1.7 18 156-173 32-49 (266)
466 3aez_A Pantothenate kinase; tr 63.5 5.8 0.0002 37.1 4.1 17 158-174 91-107 (312)
467 1tf5_A Preprotein translocase 63.4 23 0.00077 37.7 8.9 72 353-430 120-208 (844)
468 2grj_A Dephospho-COA kinase; T 63.4 4.1 0.00014 35.0 2.8 16 160-175 15-30 (192)
469 1rz3_A Hypothetical protein rb 63.4 4 0.00014 35.2 2.8 16 159-174 24-39 (201)
470 1ltq_A Polynucleotide kinase; 63.3 3 0.0001 38.6 2.1 15 160-174 5-19 (301)
471 2yjt_D ATP-dependent RNA helic 67.0 1.5 5.2E-05 36.8 0.0 74 188-271 30-107 (170)
472 3pxg_A Negative regulator of g 63.0 5.3 0.00018 39.8 3.9 17 158-174 202-218 (468)
473 2qi9_C Vitamin B12 import ATP- 63.0 3.4 0.00012 37.2 2.3 18 156-173 25-42 (249)
474 2nq2_C Hypothetical ABC transp 62.7 3.4 0.00012 37.3 2.3 18 156-173 30-47 (253)
475 2zu0_C Probable ATP-dependent 62.7 3.5 0.00012 37.5 2.4 18 156-173 45-62 (267)
476 2ihy_A ABC transporter, ATP-bi 62.6 3.4 0.00012 37.9 2.3 18 156-173 46-63 (279)
477 3qks_A DNA double-strand break 62.5 4.5 0.00015 35.0 3.0 15 160-174 26-40 (203)
478 4a2q_A RIG-I, retinoic acid in 62.3 17 0.00059 38.7 8.1 71 357-431 296-377 (797)
479 1ry6_A Internal kinesin; kines 62.2 5.1 0.00018 38.2 3.5 18 156-173 82-101 (360)
480 2fsf_A Preprotein translocase 62.2 22 0.00074 37.9 8.4 71 354-430 112-199 (853)
481 3lv8_A DTMP kinase, thymidylat 62.0 14 0.00046 32.9 6.1 29 156-185 26-54 (236)
482 2vp4_A Deoxynucleoside kinase; 62.0 3.1 0.00011 36.9 1.8 16 158-173 21-36 (230)
483 1sky_E F1-ATPase, F1-ATP synth 61.8 75 0.0026 31.3 11.8 24 153-176 147-170 (473)
484 4b8c_D Glucose-repressible alc 61.7 2.2 7.5E-05 45.2 0.9 9 264-272 440-448 (727)
485 1q0u_A Bstdead; DEAD protein, 61.7 6.2 0.00021 34.3 3.8 71 357-431 72-156 (219)
486 2vhj_A Ntpase P4, P4; non- hyd 61.6 4.2 0.00014 38.1 2.7 24 156-179 122-145 (331)
487 2d7d_A Uvrabc system protein B 61.6 1.1E+02 0.0038 31.7 13.9 77 188-274 445-525 (661)
488 3f9v_A Minichromosome maintena 61.4 4.2 0.00014 41.9 3.0 15 159-173 329-343 (595)
489 2d2e_A SUFC protein; ABC-ATPas 61.1 4.8 0.00017 36.2 3.0 18 156-173 28-45 (250)
490 4eaq_A DTMP kinase, thymidylat 60.8 4.2 0.00015 36.0 2.5 18 157-174 26-43 (229)
491 4akg_A Glutathione S-transfera 60.7 9.7 0.00033 46.3 6.2 20 154-173 1264-1283(2695)
492 3eiq_A Eukaryotic initiation f 60.5 24 0.00081 33.8 8.2 73 356-431 107-189 (414)
493 1odf_A YGR205W, hypothetical 3 60.4 4.7 0.00016 37.3 2.8 15 160-174 34-48 (290)
494 2f6r_A COA synthase, bifunctio 60.4 3.7 0.00013 37.7 2.1 16 160-175 78-93 (281)
495 2bbs_A Cystic fibrosis transme 60.3 3.2 0.00011 38.4 1.7 18 156-173 63-80 (290)
496 3gk5_A Uncharacterized rhodane 60.1 8.3 0.00028 29.3 3.8 37 356-392 54-90 (108)
497 2j0s_A ATP-dependent RNA helic 60.0 28 0.00095 33.3 8.6 72 189-270 277-352 (410)
498 1uj2_A Uridine-cytidine kinase 60.0 3.8 0.00013 36.8 2.1 15 160-174 25-39 (252)
499 3tui_C Methionine import ATP-b 59.9 5.4 0.00019 38.1 3.2 37 154-193 51-87 (366)
500 1g41_A Heat shock protein HSLU 59.3 5.2 0.00018 39.3 3.1 21 158-178 51-71 (444)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.5e-62 Score=495.78 Aligned_cols=373 Identities=29% Similarity=0.502 Sum_probs=339.8
Q ss_pred cCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCC-----CceE
Q 011065 116 ATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN-----NVIQ 190 (494)
Q Consensus 116 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~-----~~~~ 190 (494)
+.+..+|+++++++.+++++.+.||..|+|+|.++|+.+++++|++++++||||||++|++|++..+.... .+++
T Consensus 52 p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~ 131 (434)
T 2db3_A 52 PQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQ 131 (434)
T ss_dssp CCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCS
T ss_pred CCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCcc
Confidence 34556899999999999999999999999999999999999999999999999999999999999886543 3568
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecc
Q 011065 191 VVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDE 270 (494)
Q Consensus 191 ~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDE 270 (494)
+||++||++|+.|+.+.+++++...++.+..++|+.....+...+..+++|+|+||++|.+++.+....+.++++||+||
T Consensus 132 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDE 211 (434)
T 2db3_A 132 VVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDE 211 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEET
T ss_pred EEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEcc
Confidence 99999999999999999999998888999999999998888888888999999999999999988877899999999999
Q ss_pred cccccCCCcHHHHHHHHHHC--CCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecc-cccccceeEEEEeehhhhHHHH
Q 011065 271 ADKLLSPEFQPSVEQLIRFL--PANRQILMFSATFPVTVKDFKDKYLQKPYVINLMD-ELTLKGITQYYAFVEERQKVHC 347 (494)
Q Consensus 271 ah~~~~~~~~~~~~~~~~~~--~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~ 347 (494)
||++++.+|...+..++..+ +.+.|++++|||++..+..+...++.++..+.+.. ......+.+.+..+....|...
T Consensus 212 ah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~ 291 (434)
T 2db3_A 212 ADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSK 291 (434)
T ss_dssp HHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHH
T ss_pred HhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHHHH
Confidence 99999999999999999875 57889999999999999999999999887776543 2334567777777778888888
Q ss_pred HHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCC
Q 011065 348 LNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVN 427 (494)
Q Consensus 348 l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~ 427 (494)
+..++..... ++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 292 l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~ 370 (434)
T 2db3_A 292 LIEILSEQAD-GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIK 370 (434)
T ss_dssp HHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCC
T ss_pred HHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCC
Confidence 8888887654 499999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecc-cchHHHHHHHHHhCCCCccCCcchhh
Q 011065 428 VVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITY-EDRFNLYRIEQELGTEIKQIPPHIDQ 489 (494)
Q Consensus 428 ~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~ 489 (494)
+||+||+|.+..+|+||+||+||.|+.|.|++|+++ ++......+.+.+.....++|+++.+
T Consensus 371 ~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 433 (434)
T 2db3_A 371 HVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRT 433 (434)
T ss_dssp EEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC-
T ss_pred EEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 999999999999999999999999999999999995 57778889999999999999998865
No 2
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=8.1e-61 Score=482.12 Aligned_cols=379 Identities=73% Similarity=1.173 Sum_probs=349.7
Q ss_pred ccCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEE
Q 011065 115 TATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVIL 194 (494)
Q Consensus 115 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil 194 (494)
......+|+++++++.+++++.+.||..|+++|.++++.+++++++++.+|||||||++|++|++..+.....+.++||+
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil 95 (400)
T 1s2m_A 16 LNTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIM 95 (400)
T ss_dssp -----CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred cccccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEE
Confidence 34455689999999999999999999999999999999999999999999999999999999999988765556689999
Q ss_pred cCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccc
Q 011065 195 VPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKL 274 (494)
Q Consensus 195 ~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~ 274 (494)
+|+++|+.|+.+.++++....++.+....|+.....+...+...++|+|+||++|.+++......+.++++||+||||++
T Consensus 96 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~ 175 (400)
T 1s2m_A 96 VPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKM 175 (400)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHh
Confidence 99999999999999999988899999999999988877777788999999999999988877777899999999999999
Q ss_pred cCCCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeehhhhHHHHHHHHHHh
Q 011065 275 LSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSK 354 (494)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~ 354 (494)
.+..|...+..++..++...+++++|||++..+.++...++..+..+..........+.+++.......+...+..++..
T Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~ 255 (400)
T 1s2m_A 176 LSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSK 255 (400)
T ss_dssp SSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGHHHHHHHHHHH
T ss_pred hhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhHHHHHHHHHhh
Confidence 88888888999998888899999999999999999999999988877776666677788888888888899999999988
Q ss_pred cCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCC
Q 011065 355 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF 434 (494)
Q Consensus 355 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~ 434 (494)
...+++||||++++.++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++
T Consensus 256 ~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~ 335 (400)
T 1s2m_A 256 LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDF 335 (400)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSC
T ss_pred cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCccCCcchhhhhhc
Q 011065 435 PKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYC 493 (494)
Q Consensus 435 p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 493 (494)
|.+..+|+||+||+||.|++|.|++|+++.|...+.++++.++.+++++|..+.+.+|.
T Consensus 336 p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 394 (400)
T 1s2m_A 336 PKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDKSLYV 394 (400)
T ss_dssp CSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSCCGGGTC
T ss_pred CCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccccccccccccee
Confidence 99999999999999999999999999999999999999999999999999998887763
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=3.2e-60 Score=479.36 Aligned_cols=371 Identities=37% Similarity=0.687 Sum_probs=340.4
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcH
Q 011065 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (494)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (494)
..+|+++++++.+++.+.+.||..|+++|.++++.++.++++++.+|||||||++|++|+++.+.....+.++||++|++
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~ 115 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTR 115 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSH
T ss_pred CCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcH
Confidence 45799999999999999999999999999999999999999999999999999999999999887655567899999999
Q ss_pred HHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCC
Q 011065 199 ELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE 278 (494)
Q Consensus 199 ~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~ 278 (494)
+|+.|+.+.+..++...++.+....|+.....+...+..+++|+|+||++|.+++......+.++++||+||||++.+.+
T Consensus 116 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~ 195 (410)
T 2j0s_A 116 ELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKG 195 (410)
T ss_dssp HHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhh
Confidence 99999999999999888999999999999888877777788999999999999998877778999999999999999999
Q ss_pred cHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecc-cccccceeEEEEeehhh-hHHHHHHHHHHhcC
Q 011065 279 FQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMD-ELTLKGITQYYAFVEER-QKVHCLNTLFSKLQ 356 (494)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~k~~~l~~ll~~~~ 356 (494)
|...+..++..++.+.+++++|||++..+.++...++.++..+.... ......+.+.+...... .+...+..++....
T Consensus 196 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~ 275 (410)
T 2j0s_A 196 FKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLT 275 (410)
T ss_dssp THHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhcC
Confidence 99999999999999999999999999888888888888887665543 33445566666655544 48888889988888
Q ss_pred CCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCC
Q 011065 357 INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPK 436 (494)
Q Consensus 357 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~ 436 (494)
.+++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|..+|||||+++++|+|+|++++||++++|.
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~ 355 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPN 355 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCS
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCccCCcchhh
Q 011065 437 NSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQ 489 (494)
Q Consensus 437 s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 489 (494)
+...|+||+||+||.|++|.|+.|+++.|...+..++++++..++++|.++.+
T Consensus 356 s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 408 (410)
T 2j0s_A 356 NRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVAD 408 (410)
T ss_dssp SHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSCCTT
T ss_pred CHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccchhh
Confidence 99999999999999999999999999999999999999999999999987754
No 4
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.1e-59 Score=470.54 Aligned_cols=375 Identities=32% Similarity=0.535 Sum_probs=334.9
Q ss_pred CCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCC----------
Q 011065 117 TKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN---------- 186 (494)
Q Consensus 117 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~---------- 186 (494)
....+|+++++++.+++++...||..|+|+|.++|+.++.++++++.+|||||||++|++|++..+...+
T Consensus 12 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (417)
T 2i4i_A 12 PHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 91 (417)
T ss_dssp CCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccc
Confidence 3445799999999999999999999999999999999999999999999999999999999998875432
Q ss_pred --------CceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCc
Q 011065 187 --------NVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVC 258 (494)
Q Consensus 187 --------~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~ 258 (494)
..+++||++|+++|+.|+.+.++++....++.+..++|+.....+...+..+++|+|+||++|.+++.....
T Consensus 92 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~ 171 (417)
T 2i4i_A 92 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKI 171 (417)
T ss_dssp CBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSB
T ss_pred ccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCc
Confidence 125799999999999999999999988888999999999998888888888899999999999999888777
Q ss_pred cccccceEEecccccccCCCcHHHHHHHHHHC--CC--CCcEEEEEeecCcchHHHHHhhcCCCeEEEecc-ccccccee
Q 011065 259 ILKDCSMLVMDEADKLLSPEFQPSVEQLIRFL--PA--NRQILMFSATFPVTVKDFKDKYLQKPYVINLMD-ELTLKGIT 333 (494)
Q Consensus 259 ~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~--~~--~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 333 (494)
.+.++++||+||||++.+.+|...+..++... +. ..+++++|||++..+..+...++.++..+.... ......+.
T Consensus 172 ~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 251 (417)
T 2i4i_A 172 GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENIT 251 (417)
T ss_dssp CCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEE
T ss_pred ChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCce
Confidence 78999999999999999999999999988743 32 578999999999999999999998887665543 23345666
Q ss_pred EEEEeehhhhHHHHHHHHHHhc-CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEE
Q 011065 334 QYYAFVEERQKVHCLNTLFSKL-QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLV 412 (494)
Q Consensus 334 ~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlv 412 (494)
+.+.......+...+..++... ..+++||||++++.++.+++.|.+.++.+..+||++++++|..+++.|++|+.+|||
T Consensus 252 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv 331 (417)
T 2i4i_A 252 QKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILV 331 (417)
T ss_dssp EEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEE
T ss_pred EEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 7777777888888888988876 467899999999999999999999999999999999999999999999999999999
Q ss_pred EcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCccCCcchhhhh
Q 011065 413 CTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 491 (494)
Q Consensus 413 aT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 491 (494)
||+++++|+|+|++++||++++|.+..+|+||+||+||.|++|.|++|+++.+...+..+.+.+.....++|.++.+..
T Consensus 332 aT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 410 (417)
T 2i4i_A 332 ATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMA 410 (417)
T ss_dssp ECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred ECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcCcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988889998876543
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=6.7e-59 Score=470.21 Aligned_cols=371 Identities=39% Similarity=0.680 Sum_probs=321.1
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHH
Q 011065 120 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE 199 (494)
Q Consensus 120 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~ 199 (494)
.+|+++++++.+++.+.+.+|..|+++|.++++.++.++++++.+|||||||++|++++++.+.....+.++||++|+++
T Consensus 40 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 119 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRE 119 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred cCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHH
Confidence 46899999999999999999999999999999999999999999999999999999999999877656678999999999
Q ss_pred HHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhc-CCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCC
Q 011065 200 LALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLY-QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE 278 (494)
Q Consensus 200 la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~ 278 (494)
|+.|+.+.+++++...+..+....|+.........+. ..++|+|+||++|.+++......+..+++||+||||++.+.+
T Consensus 120 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~ 199 (414)
T 3eiq_A 120 LAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRG 199 (414)
T ss_dssp HHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTT
T ss_pred HHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccC
Confidence 9999999999999888999999999988887766655 678999999999999888877778899999999999998999
Q ss_pred cHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecc-cccccceeEEEEeehh-hhHHHHHHHHHHhcC
Q 011065 279 FQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMD-ELTLKGITQYYAFVEE-RQKVHCLNTLFSKLQ 356 (494)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~k~~~l~~ll~~~~ 356 (494)
|...+..++..++.+.++++||||++..+..+...++.++..+.... ......+.+.+..... ..+...+..++....
T Consensus 200 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 279 (414)
T 3eiq_A 200 FKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 279 (414)
T ss_dssp THHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSC
T ss_pred cHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999998887765543 3344455555555443 448888999998888
Q ss_pred CCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCC
Q 011065 357 INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPK 436 (494)
Q Consensus 357 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~ 436 (494)
.+++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|..+|||||+++++|+|+|++++||+++.|.
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~ 359 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 359 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCS
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCccCCcchhhh
Q 011065 437 NSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQA 490 (494)
Q Consensus 437 s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 490 (494)
+..+|+||+||+||.|++|.|++|+++.+...+..+++.++..++++|.++.+.
T Consensus 360 s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 360 NRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp STHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred CHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence 999999999999999999999999999999999999999999999999988764
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=3.5e-57 Score=454.12 Aligned_cols=372 Identities=39% Similarity=0.654 Sum_probs=334.3
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHH
Q 011065 120 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE 199 (494)
Q Consensus 120 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~ 199 (494)
.+|+++.+++.+++.+.+.||..|+|+|.++++.++.++++++.+|||+|||++|++|++..+.....+.++||+||+++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 87 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 87 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHH
Confidence 46999999999999999999999999999999999999999999999999999999999998876666668999999999
Q ss_pred HHHHHHHHHHHHhccC-CcEEEEEECCCChHHHHHHhc-CCCeEEEEchHHHHHhHhcCCccccccceEEecccccccC-
Q 011065 200 LALQTSQVCKELGKHL-NIQVMVTTGGTSLKDDIMRLY-QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS- 276 (494)
Q Consensus 200 la~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~- 276 (494)
|+.|+.+.+.++.... ++.+..+.|+.........+. ..++|+|+||+++..++......+.++++||+||||++.+
T Consensus 88 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~ 167 (391)
T 1xti_A 88 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 167 (391)
T ss_dssp HHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSS
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhc
Confidence 9999999999998765 788999999988776655443 3479999999999998888777789999999999999877
Q ss_pred CCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEeccc--ccccceeEEEEeehhhhHHHHHHHHHHh
Q 011065 277 PEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDE--LTLKGITQYYAFVEERQKVHCLNTLFSK 354 (494)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~~ll~~ 354 (494)
.++...+..++...+...+++++|||++.....+...++.++..+..... .....+..++.......+...+..++..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 247 (391)
T 1xti_A 168 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDV 247 (391)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHh
Confidence 36788888889888889999999999999999999999998877765432 3345566777777778888889999988
Q ss_pred cCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCC
Q 011065 355 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF 434 (494)
Q Consensus 355 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~ 434 (494)
...+++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.
T Consensus 248 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~ 327 (391)
T 1xti_A 248 LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDM 327 (391)
T ss_dssp SCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSC
T ss_pred cCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhccccCCCCcceEEEEeccc-chHHHHHHHHHhCCCCccCCcchhhhh
Q 011065 435 PKNSETYLHRVGRSGRFGHLGLAVNLITYE-DRFNLYRIEQELGTEIKQIPPHIDQAI 491 (494)
Q Consensus 435 p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~ 491 (494)
|.+..+|+||+||+||.|++|.|++|+++. +...+..+++.++.+++++|..++..-
T Consensus 328 p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (391)
T 1xti_A 328 PEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISS 385 (391)
T ss_dssp CSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSCCCGGG
T ss_pred CCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCccccHHH
Confidence 999999999999999999999999999976 556788999999999999998766543
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.6e-55 Score=445.12 Aligned_cols=370 Identities=36% Similarity=0.626 Sum_probs=321.0
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc
Q 011065 118 KGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTG--SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (494)
Q Consensus 118 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (494)
...+|+++++++.+++.+.+.||..|+++|.++++.++.+ +++++++|||||||++|++|++..+.....+.++||++
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 102 (412)
T 3fht_A 23 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLS 102 (412)
T ss_dssp CSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEEC
Confidence 3457999999999999999999999999999999999987 89999999999999999999999988777777999999
Q ss_pred CcHHHHHHHHHHHHHHhccC-CcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhc-CCccccccceEEeccccc
Q 011065 196 PTRELALQTSQVCKELGKHL-NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKK-GVCILKDCSMLVMDEADK 273 (494)
Q Consensus 196 P~~~la~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~-~~~~l~~~~~iViDEah~ 273 (494)
|+++|+.|+.+.++++.... +..+....++...... ....++|+|+||++|.+++.. ....+.++++||+||||+
T Consensus 103 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~ 179 (412)
T 3fht_A 103 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 179 (412)
T ss_dssp SSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHH
Confidence 99999999999999987764 5777777777665422 134679999999999998865 455678999999999999
Q ss_pred ccC-CCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEeccc-ccccceeEEEEeeh-hhhHHHHHHH
Q 011065 274 LLS-PEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDE-LTLKGITQYYAFVE-ERQKVHCLNT 350 (494)
Q Consensus 274 ~~~-~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~k~~~l~~ 350 (494)
+.+ ..+...+..+...++.+.+++++|||++..+..+...++.++..+.+... .....+.+.+.... ...+...+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 259 (412)
T 3fht_A 180 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCN 259 (412)
T ss_dssp HHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHH
T ss_pred HhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHH
Confidence 876 67888888999999999999999999999999999999998887766543 33344555554443 4567888888
Q ss_pred HHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEE
Q 011065 351 LFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVI 430 (494)
Q Consensus 351 ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI 430 (494)
++.....+++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 260 ~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi 339 (412)
T 3fht_A 260 LYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVI 339 (412)
T ss_dssp HHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEE
T ss_pred HHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEE
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCC------CCHHHHHHHhccccCCCCcceEEEEecccc-hHHHHHHHHHhCCCCccCCcchhhh
Q 011065 431 NFDFP------KNSETYLHRVGRSGRFGHLGLAVNLITYED-RFNLYRIEQELGTEIKQIPPHIDQA 490 (494)
Q Consensus 431 ~~~~p------~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ 490 (494)
++++| .+..+|+||+||+||.|++|.|++|+++.+ ...+..+++.++..+++++..-.+.
T Consensus 340 ~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 406 (412)
T 3fht_A 340 NFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDE 406 (412)
T ss_dssp ESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC-------
T ss_pred EECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCccHHH
Confidence 99999 577999999999999999999999999764 7889999999999999998754443
No 8
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.9e-55 Score=436.13 Aligned_cols=359 Identities=34% Similarity=0.595 Sum_probs=324.1
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcH
Q 011065 120 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTG-SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (494)
Q Consensus 120 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (494)
.+|+++++++.+.+.+.+.||..|+++|.++++.++++ +++++.+|||||||++|+++++..+... .+.++||++|++
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~lil~P~~ 84 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILTPTR 84 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEECSCH
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-CCCcEEEEcCCH
Confidence 46999999999999999999999999999999999988 6899999999999999999999887653 345899999999
Q ss_pred HHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCC
Q 011065 199 ELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE 278 (494)
Q Consensus 199 ~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~ 278 (494)
+|+.|+.+.+..+....++.+....|+.....+...+. .++|+|+||+++.+.+......+.++++||+||||++.+.+
T Consensus 85 ~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~ 163 (367)
T 1hv8_A 85 ELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMG 163 (367)
T ss_dssp HHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTT
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhc
Confidence 99999999999998888889999999988776655544 68999999999999888877778999999999999999999
Q ss_pred cHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeehhhhHHHHHHHHHHhcCCC
Q 011065 279 FQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQIN 358 (494)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~ 358 (494)
+...+..++..++.+.+++++|||++.........++.++..+.... ...+...+.......+...+..++. ....
T Consensus 164 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~ 239 (367)
T 1hv8_A 164 FIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI---NANIEQSYVEVNENERFEALCRLLK-NKEF 239 (367)
T ss_dssp THHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS---SSSSEEEEEECCGGGHHHHHHHHHC-STTC
T ss_pred hHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC---CCCceEEEEEeChHHHHHHHHHHHh-cCCC
Confidence 99999999999988999999999999888888888888766554432 2345556666677778888888776 4567
Q ss_pred cEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCCCH
Q 011065 359 QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNS 438 (494)
Q Consensus 359 ~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~ 438 (494)
++||||++++.++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.|.
T Consensus 240 ~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~ 319 (367)
T 1hv8_A 240 YGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNP 319 (367)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCH
T ss_pred cEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCccCC
Q 011065 439 ETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIP 484 (494)
Q Consensus 439 ~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~~~ 484 (494)
.+|.||+||+||.|++|.|++++++.|...+..+++.++..+++++
T Consensus 320 ~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 320 ESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp HHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC
T ss_pred HHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceec
Confidence 9999999999999999999999999999999999999999998875
No 9
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=3.2e-55 Score=440.23 Aligned_cols=364 Identities=33% Similarity=0.609 Sum_probs=322.0
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCc
Q 011065 120 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTG--SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPT 197 (494)
Q Consensus 120 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~ 197 (494)
.+|+++++++.+++.+.+.||..|+|+|.++++.++.+ +++++++|||||||++|+++++..+.....+.++||++|+
T Consensus 5 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 84 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPS 84 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred cCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCC
Confidence 57999999999999999999999999999999999998 8999999999999999999999998776667799999999
Q ss_pred HHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccC-
Q 011065 198 RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS- 276 (494)
Q Consensus 198 ~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~- 276 (494)
++|+.|+.+.++++....++.+....++...... ...++|+|+||+++..++......+.++++||+||||++.+
T Consensus 85 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~ 160 (395)
T 3pey_A 85 RELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQ 160 (395)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCc
Confidence 9999999999999988888888888777544321 24679999999999998888777789999999999998876
Q ss_pred CCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEeccc-ccccceeEEEEee-hhhhHHHHHHHHHHh
Q 011065 277 PEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDE-LTLKGITQYYAFV-EERQKVHCLNTLFSK 354 (494)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~k~~~l~~ll~~ 354 (494)
.++...+..+...++.+.+++++|||++..+..+...++.++..+..... .....+...+... ....+...+..++..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 240 (395)
T 3pey_A 161 QGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGL 240 (395)
T ss_dssp TTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHHHh
Confidence 67888899999999999999999999999889999999888877655432 3334455544444 445677888888888
Q ss_pred cCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCC
Q 011065 355 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF 434 (494)
Q Consensus 355 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~ 434 (494)
...+++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++
T Consensus 241 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~ 320 (395)
T 3pey_A 241 MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDL 320 (395)
T ss_dssp TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSC
T ss_pred ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC------CHHHHHHHhccccCCCCcceEEEEeccc-chHHHHHHHHHhC-CCCccCCcch
Q 011065 435 PK------NSETYLHRVGRSGRFGHLGLAVNLITYE-DRFNLYRIEQELG-TEIKQIPPHI 487 (494)
Q Consensus 435 p~------s~~~~~Qr~GRagR~g~~g~~~~l~~~~-~~~~~~~l~~~~~-~~~~~~~~~~ 487 (494)
|. |..+|+||+||+||.|+.|.|++|+++. +...+..+++.++ .+++.+|..-
T Consensus 321 p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 381 (395)
T 3pey_A 321 PTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDD 381 (395)
T ss_dssp CBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCSSC
T ss_pred CCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCChHH
Confidence 99 9999999999999999999999999864 5667888999998 8888887643
No 10
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.2e-57 Score=457.83 Aligned_cols=370 Identities=39% Similarity=0.697 Sum_probs=186.0
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcH
Q 011065 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (494)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (494)
...|+++++++.+++.+.+.||..|+++|.++++.++.++++++.+|||+|||++|++|++..+.....+.++||+||++
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 99 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTR 99 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSH
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCH
Confidence 35699999999999999999999999999999999999999999999999999999999999887766677999999999
Q ss_pred HHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCC
Q 011065 199 ELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE 278 (494)
Q Consensus 199 ~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~ 278 (494)
+|+.|+.+.+.++....++.+..++|+.........+. .++|+|+||++|...+......+.++++||+||||++.+.+
T Consensus 100 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~ 178 (394)
T 1fuu_A 100 ELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG 178 (394)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCC
Confidence 99999999999999888999999999988776654443 67999999999999888777778899999999999998889
Q ss_pred cHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEeccc-ccccceeEEEEeehhh-hHHHHHHHHHHhcC
Q 011065 279 FQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDE-LTLKGITQYYAFVEER-QKVHCLNTLFSKLQ 356 (494)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~k~~~l~~ll~~~~ 356 (494)
+...+..++..+++..+++++|||++....+....++..+..+..... .....+.+.+...... .+...+..++....
T Consensus 179 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 258 (394)
T 1fuu_A 179 FKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSIS 258 (394)
T ss_dssp CHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------------------
T ss_pred cHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcCC
Confidence 999999999999999999999999999888888888888876655432 2333444444333333 36677777777777
Q ss_pred CCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCC
Q 011065 357 INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPK 436 (494)
Q Consensus 357 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~ 436 (494)
.+++||||++++.++.+++.|.+.++.+..+||+++..+|..+++.|++|..+|||||+++++|+|+|++++||++++|.
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~ 338 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPA 338 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCccCCcchhh
Q 011065 437 NSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQ 489 (494)
Q Consensus 437 s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 489 (494)
+..+|+||+||+||.|++|.|++|+++.|...+..++++++.+++++|.++.+
T Consensus 339 s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 391 (394)
T 1fuu_A 339 NKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIAT 391 (394)
T ss_dssp -----------------------------------------------------
T ss_pred CHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchhh
Confidence 99999999999999999999999999999999999999999999999987654
No 11
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.7e-54 Score=455.08 Aligned_cols=358 Identities=27% Similarity=0.426 Sum_probs=300.6
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHh--cCCcEEEEccCCCchhHHhHHHHHHhhhcCC----CceEEEEEcCcHH
Q 011065 126 FLKRELLMGIFEKGFERPSPIQEESIPIAL--TGSDILARAKNGTGKTAAFCIPALEKIDQDN----NVIQVVILVPTRE 199 (494)
Q Consensus 126 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~--~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~----~~~~~lil~P~~~ 199 (494)
.+++.+++.+.+.||..|+|+|.++|+.++ .++++++++|||||||++|++|++..+.... .+.++|||+|+++
T Consensus 78 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 78 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 157 (563)
T ss_dssp SSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHH
Confidence 399999999999999999999999999999 6789999999999999999999999987643 2358999999999
Q ss_pred HHHHHHHHHHHHhcc----CCcEEEEEECCCChHHHHHHh-cCCCeEEEEchHHHHHhHhcC-CccccccceEEeccccc
Q 011065 200 LALQTSQVCKELGKH----LNIQVMVTTGGTSLKDDIMRL-YQPVHLLVGTPGRILDLSKKG-VCILKDCSMLVMDEADK 273 (494)
Q Consensus 200 la~q~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~-~~~~~Ilv~T~~~l~~~~~~~-~~~l~~~~~iViDEah~ 273 (494)
|+.|+.+.++.+... ....+..+.|+.....+...+ ...++|+|+||++|.+++.+. ...+..+++|||||||+
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH
Confidence 999999999987542 245678888888877666555 347899999999999877654 33578899999999999
Q ss_pred ccCCCcHHHHHHHHHHC-------CCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecc-----cccccceeEEEEeehh
Q 011065 274 LLSPEFQPSVEQLIRFL-------PANRQILMFSATFPVTVKDFKDKYLQKPYVINLMD-----ELTLKGITQYYAFVEE 341 (494)
Q Consensus 274 ~~~~~~~~~~~~~~~~~-------~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 341 (494)
+++++|.+.+..++..+ ..+.|++++|||++..+..+...++..+..+.+.. ......+.+.+.....
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 99999999998887665 23678999999999989999988888876665432 1122234444443332
Q ss_pred h-h-H---HHHHHHHHHh-cCCCcEEEEecChhHHHHHHHHHHHc---CCcEEEEccCCCHHHHHHHHHHhhcCCccEEE
Q 011065 342 R-Q-K---VHCLNTLFSK-LQINQSIIFCNSVNRVELLAKKITEL---GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLV 412 (494)
Q Consensus 342 ~-~-k---~~~l~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlv 412 (494)
. . . ...+...+.. ....++||||+++..++.+++.|.+. ++.+..+||+|++.+|..+++.|++|+.+|||
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 1 1 1 2222233332 45679999999999999999999987 89999999999999999999999999999999
Q ss_pred EcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCccC
Q 011065 413 CTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQI 483 (494)
Q Consensus 413 aT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~~ 483 (494)
||+++++|||+|++++||++++|.+..+|+||+|||||.|++|.|++|+++.|...+..+++..+.+++..
T Consensus 398 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~ 468 (563)
T 3i5x_A 398 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQ 468 (563)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEE
T ss_pred EcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999988877643
No 12
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=4.1e-56 Score=458.06 Aligned_cols=369 Identities=37% Similarity=0.626 Sum_probs=177.8
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc
Q 011065 118 KGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTG--SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (494)
Q Consensus 118 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (494)
...+|++++|++.+++.+.+.||..|+++|.++++.++.+ +++++++|||||||++|++|++..+.....++++||++
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~ 169 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLS 169 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEEC
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEe
Confidence 3467999999999999999999999999999999999987 88999999999999999999999998777777899999
Q ss_pred CcHHHHHHHHHHHHHHhccC-CcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhc-CCccccccceEEeccccc
Q 011065 196 PTRELALQTSQVCKELGKHL-NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKK-GVCILKDCSMLVMDEADK 273 (494)
Q Consensus 196 P~~~la~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~-~~~~l~~~~~iViDEah~ 273 (494)
|+++|+.|+.+++.++.... ++.+....++...... ....++|+|+||++|++++.+ ....+.++++|||||||+
T Consensus 170 Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~ 246 (479)
T 3fmp_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 246 (479)
T ss_dssp SSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHH
T ss_pred ChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHH
Confidence 99999999999999987654 5677777776654322 134578999999999998865 345678999999999999
Q ss_pred ccC-CCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEeccc-ccccceeEEEEeehh-hhHHHHHHH
Q 011065 274 LLS-PEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDE-LTLKGITQYYAFVEE-RQKVHCLNT 350 (494)
Q Consensus 274 ~~~-~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~k~~~l~~ 350 (494)
+.+ .++...+..+.+.++.++|++++|||++..+..+...++.++..+.+... .....+.+.+..... ..+...+..
T Consensus 247 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 326 (479)
T 3fmp_B 247 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCN 326 (479)
T ss_dssp HHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----------------------------
T ss_pred HhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHH
Confidence 876 67888888889999999999999999999999999999998887776543 223344444444433 456777777
Q ss_pred HHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEE
Q 011065 351 LFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVI 430 (494)
Q Consensus 351 ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI 430 (494)
++.....+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|..+|||||+++++|+|+|++++||
T Consensus 327 ~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI 406 (479)
T 3fmp_B 327 LYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVI 406 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEE
Confidence 77777778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCC------CHHHHHHHhccccCCCCcceEEEEecccc-hHHHHHHHHHhCCCCccCCcchhh
Q 011065 431 NFDFPK------NSETYLHRVGRSGRFGHLGLAVNLITYED-RFNLYRIEQELGTEIKQIPPHIDQ 489 (494)
Q Consensus 431 ~~~~p~------s~~~~~Qr~GRagR~g~~g~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~ 489 (494)
++|+|. +..+|+||+|||||.|++|.|++|+++.+ ...+..+++.++..+++++..-.+
T Consensus 407 ~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 472 (479)
T 3fmp_B 407 NFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 472 (479)
T ss_dssp ------------------------------------------------------------------
T ss_pred EecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCccHH
Confidence 999994 67899999999999999999999999664 778889999999999988875444
No 13
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=4.8e-54 Score=452.03 Aligned_cols=358 Identities=27% Similarity=0.422 Sum_probs=302.1
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHh--cCCcEEEEccCCCchhHHhHHHHHHhhhcCC----CceEEEEEcCcHH
Q 011065 126 FLKRELLMGIFEKGFERPSPIQEESIPIAL--TGSDILARAKNGTGKTAAFCIPALEKIDQDN----NVIQVVILVPTRE 199 (494)
Q Consensus 126 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~--~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~----~~~~~lil~P~~~ 199 (494)
.+++.+++++.+.||..|+|+|.++|+.++ .++++++.+|||||||++|++|+++.+.... .+.++|||+|+++
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~ 106 (579)
T 3sqw_A 27 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 106 (579)
T ss_dssp SSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHH
Confidence 399999999999999999999999999999 6789999999999999999999999886542 3458999999999
Q ss_pred HHHHHHHHHHHHhcc----CCcEEEEEECCCChHHHHHHhc-CCCeEEEEchHHHHHhHhcC-CccccccceEEeccccc
Q 011065 200 LALQTSQVCKELGKH----LNIQVMVTTGGTSLKDDIMRLY-QPVHLLVGTPGRILDLSKKG-VCILKDCSMLVMDEADK 273 (494)
Q Consensus 200 la~q~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~~~~~-~~~l~~~~~iViDEah~ 273 (494)
|+.|+.+.+..+... ....+..+.|+.....+...+. ..++|+|+||++|.+++.+. ...+..+++|||||||+
T Consensus 107 La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 186 (579)
T 3sqw_A 107 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 186 (579)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHH
Confidence 999999999987632 3466788889888777666553 37899999999999877754 34578899999999999
Q ss_pred ccCCCcHHHHHHHHHHCC-------CCCcEEEEEeecCcchHHHHHhhcCCCeEEEecc-----cccccceeEEEEeehh
Q 011065 274 LLSPEFQPSVEQLIRFLP-------ANRQILMFSATFPVTVKDFKDKYLQKPYVINLMD-----ELTLKGITQYYAFVEE 341 (494)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~-------~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 341 (494)
+++++|.+.+..++..++ .++++++||||++..+..+...++..+..+.+.. ......+.+.+.....
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 266 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 266 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecc
Confidence 999999999988876653 3679999999999999999999998876665432 1122334444443332
Q ss_pred h--hHH---HHHHHHHHh-cCCCcEEEEecChhHHHHHHHHHHHc---CCcEEEEccCCCHHHHHHHHHHhhcCCccEEE
Q 011065 342 R--QKV---HCLNTLFSK-LQINQSIIFCNSVNRVELLAKKITEL---GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLV 412 (494)
Q Consensus 342 ~--~k~---~~l~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlv 412 (494)
. ... ..+...+.. ....++||||+++..++.+++.|.+. ++.+..+||+|++.+|..+++.|++|+.+|||
T Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLV 346 (579)
T 3sqw_A 267 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 346 (579)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEE
Confidence 2 122 223333333 45679999999999999999999987 89999999999999999999999999999999
Q ss_pred EcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCccC
Q 011065 413 CTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQI 483 (494)
Q Consensus 413 aT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~~ 483 (494)
||+++++|||+|++++||++++|.+..+|+||+|||||.|++|.|++|+++.|...+..+++..+.+++..
T Consensus 347 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~ 417 (579)
T 3sqw_A 347 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQ 417 (579)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEE
T ss_pred EcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999988877543
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.8e-52 Score=411.05 Aligned_cols=336 Identities=29% Similarity=0.518 Sum_probs=290.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHH
Q 011065 127 LKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQ 206 (494)
Q Consensus 127 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~ 206 (494)
|++.+.+.+.+.||..|+++|.++++.+++++++++.+|||+|||++|++|++.. +.++||++|+++|+.|+.+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~ 74 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVAS 74 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999998874 3479999999999999999
Q ss_pred HHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHH
Q 011065 207 VCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQL 286 (494)
Q Consensus 207 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~ 286 (494)
.++++....+..+..++|+.....+...+. .++|+|+||++|.+++......+.++++||+||||++.+.++...+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~ 153 (337)
T 2z0m_A 75 HIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKII 153 (337)
T ss_dssp HHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHH
T ss_pred HHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHH
Confidence 999998888899999999988776655543 4899999999999988877777899999999999999989999999999
Q ss_pred HHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeehhhhHHHHHHHHHHhcCCCcEEEEecC
Q 011065 287 IRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNS 366 (494)
Q Consensus 287 ~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~ 366 (494)
+...+...+++++|||++....+....++.++..+... .....+...+.......+ .....+.....+++||||++
T Consensus 154 ~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~lvf~~~ 229 (337)
T 2z0m_A 154 LAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC--IGLANVEHKFVHVKDDWR--SKVQALRENKDKGVIVFVRT 229 (337)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS--GGGGGEEEEEEECSSSSH--HHHHHHHTCCCSSEEEECSC
T ss_pred HhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc--cccCCceEEEEEeChHHH--HHHHHHHhCCCCcEEEEEcC
Confidence 99998889999999999999888888888887655432 233344444444433332 22345556677899999999
Q ss_pred hhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhc
Q 011065 367 VNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVG 446 (494)
Q Consensus 367 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~G 446 (494)
++.++.+++.|. .+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++++|.|..+|+||+|
T Consensus 230 ~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~G 305 (337)
T 2z0m_A 230 RNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIG 305 (337)
T ss_dssp HHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHT
T ss_pred HHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcC
Confidence 999999998886 6889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcceEEEEecccchHHHHHHHHHhCC
Q 011065 447 RSGRFGHLGLAVNLITYEDRFNLYRIEQELGT 478 (494)
Q Consensus 447 RagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~ 478 (494)
|+||.|++|.|++|+. .+...+..+++.++.
T Consensus 306 R~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 306 RTGRMGRKGEAITFIL-NEYWLEKEVKKVSQK 336 (337)
T ss_dssp TBCGGGCCEEEEEEES-SCHHHHHHHC-----
T ss_pred ccccCCCCceEEEEEe-CcHHHHHHHHHHhcc
Confidence 9999999999999999 888888888877654
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=6.4e-52 Score=432.49 Aligned_cols=340 Identities=19% Similarity=0.240 Sum_probs=279.0
Q ss_pred ccccCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHH
Q 011065 122 FEDYFLKRELLMGIFE-KGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTREL 200 (494)
Q Consensus 122 ~~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~l 200 (494)
+.++++++.+.+.|++ .||..|+|+|.++|+.+++++++++.+|||+|||++|++|++.. ..++|||+|+++|
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------~g~~lVisP~~~L 96 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------DGFTLVICPLISL 96 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS------SSEEEEECSCHHH
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc------CCcEEEEeCHHHH
Confidence 3457788999999998 59999999999999999999999999999999999999999863 2389999999999
Q ss_pred HHHHHHHHHHHhccCCcEEEEEECCCChHHHHHH------hcCCCeEEEEchHHHH------HhHhcCCccccccceEEe
Q 011065 201 ALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMR------LYQPVHLLVGTPGRIL------DLSKKGVCILKDCSMLVM 268 (494)
Q Consensus 201 a~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------~~~~~~Ilv~T~~~l~------~~~~~~~~~l~~~~~iVi 268 (494)
+.|+.+.+..+ ++.+..+.++....+.... .....+|+|+||++|. +.+.. ...+.++++|||
T Consensus 97 ~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i~~iVi 171 (591)
T 2v1x_A 97 MEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRFTRIAV 171 (591)
T ss_dssp HHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCEEEEEE
T ss_pred HHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCCcEEEE
Confidence 99999988886 5778888888766543321 2457899999999874 22222 234678999999
Q ss_pred cccccccCCC--cHHHHHH--HHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeeh--hh
Q 011065 269 DEADKLLSPE--FQPSVEQ--LIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVE--ER 342 (494)
Q Consensus 269 DEah~~~~~~--~~~~~~~--~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 342 (494)
||||++.+++ |.+.+.. .+....++.++|++|||++..+......++..+....+......+++........ ..
T Consensus 172 DEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~ 251 (591)
T 2v1x_A 172 DEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTE 251 (591)
T ss_dssp ETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHH
T ss_pred ECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHH
Confidence 9999998866 7777665 3444445789999999999888888887777654444444444455433332222 23
Q ss_pred hHHHHHHHHHHh-cCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccC
Q 011065 343 QKVHCLNTLFSK-LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGI 421 (494)
Q Consensus 343 ~k~~~l~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gi 421 (494)
.+...+..++.. ...+++||||++++.++.+++.|.+.++.+..+||+|++.+|..+++.|.+|..+|||||+++++||
T Consensus 252 ~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GI 331 (591)
T 2v1x_A 252 DFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGI 331 (591)
T ss_dssp HHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTC
T ss_pred HHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCC
Confidence 345566666654 3567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHH
Q 011065 422 DIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRI 472 (494)
Q Consensus 422 di~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l 472 (494)
|+|+|++|||+++|.|+++|+||+|||||.|.+|.|++||++.|...+..+
T Consensus 332 D~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 332 DKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp CCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred CcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 999999999999999999999999999999999999999998876655444
No 16
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-52 Score=434.08 Aligned_cols=365 Identities=30% Similarity=0.548 Sum_probs=267.6
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcH
Q 011065 121 EFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTG--SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (494)
Q Consensus 121 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (494)
.|...++++.+++.+.+.||..|+++|.++++.++++ +++++++|||||||++|+++++..+.....+.++||++|++
T Consensus 120 ~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~ 199 (508)
T 3fho_A 120 XXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSR 199 (508)
T ss_dssp -------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCH
T ss_pred cccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcH
Confidence 4556678889999999999999999999999999998 89999999999999999999999988776677999999999
Q ss_pred HHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccC-C
Q 011065 199 ELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS-P 277 (494)
Q Consensus 199 ~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~-~ 277 (494)
+|+.|+.+.++++....+..+....++..... ....++|+|+||+++...+......+.++++||+||||++.+ .
T Consensus 200 ~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~ 275 (508)
T 3fho_A 200 ELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQ 275 (508)
T ss_dssp HHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC-
T ss_pred HHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccC
Confidence 99999999999998777766665555443322 234689999999999998887777789999999999999877 6
Q ss_pred CcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecc-cccccceeEEEEee-hhhhHHHHHHHHHHhc
Q 011065 278 EFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMD-ELTLKGITQYYAFV-EERQKVHCLNTLFSKL 355 (494)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~k~~~l~~ll~~~ 355 (494)
++...+..+...++.+.++|++|||++..+..+...++.++..+.+.. ......+...+... ....+...+..++...
T Consensus 276 ~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~ 355 (508)
T 3fho_A 276 GLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLL 355 (508)
T ss_dssp -CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC--
T ss_pred CcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhc
Confidence 788999999999999999999999999889999999988887765543 22333344444433 4456777888888888
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCC
Q 011065 356 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFP 435 (494)
Q Consensus 356 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p 435 (494)
..+++||||++++.++.+++.|.+.++.+..+||+++..+|..+++.|++|..+|||||+++++|+|+|++++||+++.|
T Consensus 356 ~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p 435 (508)
T 3fho_A 356 TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMP 435 (508)
T ss_dssp -CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------CCHHHHHHHhccccCCCCcceEEEEec-ccchHHHHHHHHHhCCCCccCCcchhh
Q 011065 436 ------KNSETYLHRVGRSGRFGHLGLAVNLIT-YEDRFNLYRIEQELGTEIKQIPPHIDQ 489 (494)
Q Consensus 436 ------~s~~~~~Qr~GRagR~g~~g~~~~l~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~ 489 (494)
.|..+|+||+||+||.|++|.|++|++ .++...+..+++.++..++++|..-.+
T Consensus 436 ~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~ 496 (508)
T 3fho_A 436 LDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDDYE 496 (508)
T ss_dssp CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC--------
T ss_pred CcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCccHH
Confidence 789999999999999999999999998 456778899999999999999875433
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=4.4e-51 Score=422.09 Aligned_cols=340 Identities=24% Similarity=0.272 Sum_probs=277.1
Q ss_pred CcccccCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcH
Q 011065 120 NEFEDYFLKRELLMGIFE-KGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (494)
Q Consensus 120 ~~~~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (494)
.+|+++++++.+.+.+.+ .||..|+|+|.++|+.+++++++++.+|||+|||++|++|++.. ...+||++|++
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~g~~lvi~P~~ 75 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSPLI 75 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECSCH
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------CCCEEEECChH
Confidence 368899999999999998 79999999999999999999999999999999999999999854 13789999999
Q ss_pred HHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHH----HhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccc
Q 011065 199 ELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIM----RLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKL 274 (494)
Q Consensus 199 ~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~ 274 (494)
+|+.|+.+.+..+ ++.+..+.++....+... ......+|+|+||++|............++++|||||||++
T Consensus 76 aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i 151 (523)
T 1oyw_A 76 SLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCI 151 (523)
T ss_dssp HHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGG
T ss_pred HHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCcccc
Confidence 9999998888765 567777877776544321 12356899999999985321111223467899999999999
Q ss_pred cCCC--cHHHHHHH---HHHCCCCCcEEEEEeecCcchHHHHHhhc--CCCeEEEecccccccceeEEEEeehhhhHHHH
Q 011065 275 LSPE--FQPSVEQL---IRFLPANRQILMFSATFPVTVKDFKDKYL--QKPYVINLMDELTLKGITQYYAFVEERQKVHC 347 (494)
Q Consensus 275 ~~~~--~~~~~~~~---~~~~~~~~~~i~~SATl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 347 (494)
.+++ |.+.+..+ ...+ ++.+++++|||++..+.......+ .++.++. .....+++. +.......+...
T Consensus 152 ~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~--~~~~r~~l~--~~v~~~~~~~~~ 226 (523)
T 1oyw_A 152 SQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI--SSFDRPNIR--YMLMEKFKPLDQ 226 (523)
T ss_dssp CTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEE--CCCCCTTEE--EEEEECSSHHHH
T ss_pred CcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEe--CCCCCCceE--EEEEeCCCHHHH
Confidence 8765 76666544 4445 468899999999887666444443 3443332 223333432 333444566777
Q ss_pred HHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCC
Q 011065 348 LNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVN 427 (494)
Q Consensus 348 l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~ 427 (494)
+..++.....+++||||++++.++.+++.|.+.++.+..+||+|++++|..+++.|.+|+.+|||||+++++|||+|+++
T Consensus 227 l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~ 306 (523)
T 1oyw_A 227 LMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVR 306 (523)
T ss_dssp HHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCC
T ss_pred HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCcc
Confidence 88888777778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHH
Q 011065 428 VVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 474 (494)
Q Consensus 428 ~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~ 474 (494)
+|||++.|.|.++|+||+|||||.|.+|.|++||++.|...+..+.+
T Consensus 307 ~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 307 FVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp EEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999887766555443
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=5e-49 Score=397.84 Aligned_cols=325 Identities=18% Similarity=0.164 Sum_probs=260.4
Q ss_pred HHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHH
Q 011065 131 LLMGIFE-KGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCK 209 (494)
Q Consensus 131 l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~ 209 (494)
+.+.+++ .+| .|+|+|.++++.+++++++++++|||||||++|+++++..+. .+.++||++|+++|+.|+.+.++
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~---~~~~~lil~Pt~~L~~q~~~~~~ 85 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---KGKKSALVFPTVTLVKQTLERLQ 85 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT---TTCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc---CCCEEEEEECCHHHHHHHHHHHH
Confidence 3444444 355 799999999999999999999999999999999999888763 34589999999999999999999
Q ss_pred HHhccCCcEEEEEECCCCh---HHHHHHhcCC-CeEEEEchHHHHHhHhcCCccccccceEEecccccccC---------
Q 011065 210 ELGKHLNIQVMVTTGGTSL---KDDIMRLYQP-VHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS--------- 276 (494)
Q Consensus 210 ~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~-~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~--------- 276 (494)
.++. .++.+..++|+... ..+...+..+ ++|+|+||++|.+++.. ..+.++++||+||||++..
T Consensus 86 ~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~l 162 (414)
T 3oiy_A 86 KLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLL 162 (414)
T ss_dssp HHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHHH
T ss_pred HHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhHH
Confidence 9887 88999999999987 4444455444 89999999999887764 4567899999999997643
Q ss_pred --CCcHHH-HHHHHHHCC-----------CCCcEEEEEee-cCcchH-HHHHhhcCCCeEEEecccccccceeEEEEeeh
Q 011065 277 --PEFQPS-VEQLIRFLP-----------ANRQILMFSAT-FPVTVK-DFKDKYLQKPYVINLMDELTLKGITQYYAFVE 340 (494)
Q Consensus 277 --~~~~~~-~~~~~~~~~-----------~~~~~i~~SAT-l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (494)
.+|.+. +..++..++ .+.+++++||| +|..+. .+...++... ..........+.+.+...
T Consensus 163 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~- 238 (414)
T 3oiy_A 163 MMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFT---VGRLVSVARNITHVRISS- 238 (414)
T ss_dssp HHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCC---SSCCCCCCCSEEEEEESS-
T ss_pred hhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccC---cCccccccccchheeecc-
Confidence 567777 778887776 78999999999 565544 3333333211 001122233444444433
Q ss_pred hhhHHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEE-EEccCCCHHHHHHHHHHhhcCCccEEEE----cC
Q 011065 341 ERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCF-YIHAKMLQDHRNRVFHDFRNGACRNLVC----TD 415 (494)
Q Consensus 341 ~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~r~~i~~~f~~g~~~vlva----T~ 415 (494)
.+...+..++.. ..+++||||+++..++.+++.|.+.++.+. .+||. +|. ++.|++|+.+|||| |+
T Consensus 239 --~~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~ 309 (414)
T 3oiy_A 239 --RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYG 309 (414)
T ss_dssp --CCHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTC
T ss_pred --CHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCc
Confidence 455566777766 348999999999999999999999999998 88985 343 99999999999999 99
Q ss_pred cccccCCCCC-CCEEEEcCCC--CCHHHHHHHhccccCCC----CcceEEEEecccchHHHHHHHHHhC
Q 011065 416 LFTRGIDIQA-VNVVINFDFP--KNSETYLHRVGRSGRFG----HLGLAVNLITYEDRFNLYRIEQELG 477 (494)
Q Consensus 416 ~~~~Gidi~~-v~~VI~~~~p--~s~~~~~Qr~GRagR~g----~~g~~~~l~~~~~~~~~~~l~~~~~ 477 (494)
++++|+|+|+ +++||++++| .+..+|+||+||+||.| ..|.|++|+ .|...+..+++.++
T Consensus 310 ~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 310 KLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp CCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred hhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 9999999999 9999999999 99999999999999987 479999999 66667778888777
No 19
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.4e-47 Score=412.77 Aligned_cols=351 Identities=21% Similarity=0.276 Sum_probs=273.3
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcH
Q 011065 120 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPI-ALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (494)
Q Consensus 120 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (494)
.+|+++++++.+.+.+.+.||..|+++|.++++. +.+++++++++|||||||+++.+++++.+... +.+++|++|++
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~r 85 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPLR 85 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSCH
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCcH
Confidence 5699999999999999999999999999999999 78889999999999999999999999887643 24899999999
Q ss_pred HHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCC
Q 011065 199 ELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE 278 (494)
Q Consensus 199 ~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~ 278 (494)
+|+.|+.+.++.+ ...++.++.++|+....+.. ...++|+|+||+++..++..+...+.++++||+||+|++.+..
T Consensus 86 ~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~ 161 (715)
T 2va8_A 86 ALTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPE 161 (715)
T ss_dssp HHHHHHHHHHGGG-GGGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTT
T ss_pred HHHHHHHHHHHHh-hcCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcc
Confidence 9999999888544 45688999999987665431 2368999999999999888876668999999999999998888
Q ss_pred cHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEE------------EEeeh------
Q 011065 279 FQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQY------------YAFVE------ 340 (494)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~------ 340 (494)
+...++.++..++ +.++|+||||++. ..++.. ++..+.+ ..... ...+... ..+.+
T Consensus 162 ~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~-~l~~~~~-~~~~r--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (715)
T 2va8_A 162 RGPVVESVTIRAK-RRNLLALSATISN-YKQIAK-WLGAEPV-ATNWR--PVPLIEGVIYPERKKKEYNVIFKDNTTKKV 235 (715)
T ss_dssp THHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHH-HHTCEEE-ECCCC--SSCEEEEEEEECSSTTEEEEEETTSCEEEE
T ss_pred cchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHH-HhCCCcc-CCCCC--CCCceEEEEecCCcccceeeecCcchhhhc
Confidence 9999998888776 8999999999874 344444 4443221 11100 0001000 00111
Q ss_pred --hhhHHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcC------------------------------------C
Q 011065 341 --ERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELG------------------------------------Y 382 (494)
Q Consensus 341 --~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~------------------------------------~ 382 (494)
...+...+..++. ..+++||||+++++++.+++.|.+.. .
T Consensus 236 ~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 313 (715)
T 2va8_A 236 HGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISK 313 (715)
T ss_dssp ESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhc
Confidence 1334444444443 56899999999999999999998642 3
Q ss_pred cEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEE----cC-------CCCCHHHHHHHhccccCC
Q 011065 383 SCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVIN----FD-------FPKNSETYLHRVGRSGRF 451 (494)
Q Consensus 383 ~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~----~~-------~p~s~~~~~Qr~GRagR~ 451 (494)
.+.++||+|+.++|..+++.|++|.++|||||+++++|||+|++++||+ |+ .|.|..+|.||+|||||.
T Consensus 314 ~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~ 393 (715)
T 2va8_A 314 GVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRP 393 (715)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCT
T ss_pred CEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCC
Confidence 5899999999999999999999999999999999999999999999999 88 899999999999999998
Q ss_pred C--CcceEEEEecccchHHHHHHHHHhCCCCccCCc
Q 011065 452 G--HLGLAVNLITYEDRFNLYRIEQELGTEIKQIPP 485 (494)
Q Consensus 452 g--~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 485 (494)
| .+|.||+++++.+.. ...+++++....+.+..
T Consensus 394 g~~~~G~~~~l~~~~~~~-~~~~~~~l~~~~e~~~s 428 (715)
T 2va8_A 394 GFDQIGESIVVVRDKEDV-DRVFKKYVLSDVEPIES 428 (715)
T ss_dssp TTCSCEEEEEECSCGGGH-HHHHHHTTSSCCCCCCC
T ss_pred CCCCCceEEEEeCCchHH-HHHHHHHHcCCCCCcee
Confidence 7 479999999877642 12233444444444443
No 20
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.6e-47 Score=412.25 Aligned_cols=351 Identities=20% Similarity=0.262 Sum_probs=279.2
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHH
Q 011065 121 EFEDYFLKRELLMGIFEKGFERPSPIQEESIPI-ALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE 199 (494)
Q Consensus 121 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~ 199 (494)
+|.++++++.+.+.+.+.||..|+++|.++++. +.+++++++++|||||||++|.++++..+... +.+++|++|+++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~ra 79 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKA 79 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGG
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHH
Confidence 588999999999999999999999999999998 88999999999999999999999999887643 248999999999
Q ss_pred HHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCc
Q 011065 200 LALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEF 279 (494)
Q Consensus 200 la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~ 279 (494)
|+.|+.+.++++. ..++.+..++|+...... ....++|+|+||+++..++.+....+.++++||+||+|++.+..+
T Consensus 80 La~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r 155 (720)
T 2zj8_A 80 LAEEKFQEFQDWE-KIGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDR 155 (720)
T ss_dssp GHHHHHHHTGGGG-GGTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTT
T ss_pred HHHHHHHHHHHHH-hcCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcc
Confidence 9999999886554 458899999997665432 124689999999999998887766689999999999999988889
Q ss_pred HHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEE------Eeeh-----hhhHHHHH
Q 011065 280 QPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYY------AFVE-----ERQKVHCL 348 (494)
Q Consensus 280 ~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-----~~~k~~~l 348 (494)
...+..++..++.+.++|+||||++. ..++. .++..+. +... .....+...+ .... ...+...+
T Consensus 156 ~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~-~~l~~~~-~~~~--~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (720)
T 2zj8_A 156 GATLEVILAHMLGKAQIIGLSATIGN-PEELA-EWLNAEL-IVSD--WRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELV 230 (720)
T ss_dssp HHHHHHHHHHHBTTBEEEEEECCCSC-HHHHH-HHTTEEE-EECC--CCSSEEEEEEEETTEEEETTSCEEECSSTTHHH
T ss_pred cHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHH-HHhCCcc-cCCC--CCCCcceEEEEeCCeeeccccchhhhhHHHHHH
Confidence 99999999888778999999999874 34444 3444221 1111 1111111110 1111 12334445
Q ss_pred HHHHHhcCCCcEEEEecChhHHHHHHHHHHHc---------------------------------CCcEEEEccCCCHHH
Q 011065 349 NTLFSKLQINQSIIFCNSVNRVELLAKKITEL---------------------------------GYSCFYIHAKMLQDH 395 (494)
Q Consensus 349 ~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------------------------------~~~~~~~~~~~~~~~ 395 (494)
..++. ..+++||||+++++++.++..|.+. ...+.++||+|++++
T Consensus 231 ~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~ 308 (720)
T 2zj8_A 231 YDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDE 308 (720)
T ss_dssp HHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHH
T ss_pred HHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHH
Confidence 55443 4589999999999999999998753 124899999999999
Q ss_pred HHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEE----cC----CCCCHHHHHHHhccccCCC--CcceEEEEecccc
Q 011065 396 RNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVIN----FD----FPKNSETYLHRVGRSGRFG--HLGLAVNLITYED 465 (494)
Q Consensus 396 r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~----~~----~p~s~~~~~Qr~GRagR~g--~~g~~~~l~~~~~ 465 (494)
|..+++.|++|.++|||||+++++|||+|++++||+ || .|.|..+|.||+|||||.| .+|.||+++++.+
T Consensus 309 R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 309 RVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp HHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSC
T ss_pred HHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCcc
Confidence 999999999999999999999999999999999998 66 5899999999999999988 4799999999887
Q ss_pred hHHHHHHHHHhCCCCccCCcc
Q 011065 466 RFNLYRIEQELGTEIKQIPPH 486 (494)
Q Consensus 466 ~~~~~~l~~~~~~~~~~~~~~ 486 (494)
.. ..+++++....+++...
T Consensus 389 ~~--~~~~~~~~~~~~~i~s~ 407 (720)
T 2zj8_A 389 PR--EVMNHYIFGKPEKLFSQ 407 (720)
T ss_dssp HH--HHHHHHTTSCCCCCCCC
T ss_pred HH--HHHHHHhcCCCCCcEee
Confidence 32 23445665555555443
No 21
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=7.7e-48 Score=413.55 Aligned_cols=331 Identities=21% Similarity=0.290 Sum_probs=264.9
Q ss_pred cccccC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcH
Q 011065 121 EFEDYF--LKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (494)
Q Consensus 121 ~~~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (494)
+|++++ +++.+.+.+.+.||..|+++|.++++.+.+++++++++|||||||+++.++++..+.. +.+++|++|++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~l~i~P~r 78 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVVPLR 78 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEESSH
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---CCcEEEEeCcH
Confidence 477777 8999999999999999999999999999999999999999999999999999988764 34899999999
Q ss_pred HHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCC
Q 011065 199 ELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE 278 (494)
Q Consensus 199 ~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~ 278 (494)
+|+.|+.+.++++ ...++.+..++|+....+. ....++|+|+||+++..++.+....+.++++||+||+|++.+..
T Consensus 79 ~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~ 154 (702)
T 2p6r_A 79 ALAGEKYESFKKW-EKIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEK 154 (702)
T ss_dssp HHHHHHHHHHTTT-TTTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTT
T ss_pred HHHHHHHHHHHHH-HhcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCC
Confidence 9999999988644 3558899999998765532 12478999999999999988876668999999999999998888
Q ss_pred cHHHHHHHHHHC---CCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEE------EEeehhh-------
Q 011065 279 FQPSVEQLIRFL---PANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQY------YAFVEER------- 342 (494)
Q Consensus 279 ~~~~~~~~~~~~---~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~------- 342 (494)
+...+..++..+ .++.++|+||||++. ..++. .++..+. +..... ...+... ....+..
T Consensus 155 r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~-~~l~~~~-~~~~~r--~~~l~~~~~~~~~~~~~~~~~~~~~~~ 229 (702)
T 2p6r_A 155 RGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIA-EWLDADY-YVSDWR--PVPLVEGVLCEGTLELFDGAFSTSRRV 229 (702)
T ss_dssp THHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHH-HHTTCEE-EECCCC--SSCEEEEEECSSEEEEEETTEEEEEEC
T ss_pred cccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHH-HHhCCCc-ccCCCC--CccceEEEeeCCeeeccCcchhhhhhh
Confidence 888888776555 578999999999884 44444 4554332 211111 0011110 0111111
Q ss_pred hHHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHc------------------------------CCcEEEEccCCC
Q 011065 343 QKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITEL------------------------------GYSCFYIHAKML 392 (494)
Q Consensus 343 ~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~------------------------------~~~~~~~~~~~~ 392 (494)
.+...+...+. ..+++||||+++++++.+++.|.+. +..+.++||+|+
T Consensus 230 ~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~ 307 (702)
T 2p6r_A 230 KFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLL 307 (702)
T ss_dssp CHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSC
T ss_pred hHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCC
Confidence 14445555443 5689999999999999999988753 245889999999
Q ss_pred HHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEE----cC---CCCCHHHHHHHhccccCCC--CcceEEEEecc
Q 011065 393 QDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVIN----FD---FPKNSETYLHRVGRSGRFG--HLGLAVNLITY 463 (494)
Q Consensus 393 ~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~----~~---~p~s~~~~~Qr~GRagR~g--~~g~~~~l~~~ 463 (494)
+++|..+++.|++|.++|||||+++++|||+|++++||+ || .|.|..+|.||+|||||.| .+|.||++++.
T Consensus 308 ~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~ 387 (702)
T 2p6r_A 308 NGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGK 387 (702)
T ss_dssp HHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCG
T ss_pred HHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecC
Confidence 999999999999999999999999999999999999998 65 6899999999999999988 47999999998
Q ss_pred cc
Q 011065 464 ED 465 (494)
Q Consensus 464 ~~ 465 (494)
.+
T Consensus 388 ~~ 389 (702)
T 2p6r_A 388 RD 389 (702)
T ss_dssp GG
T ss_pred cc
Confidence 87
No 22
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-47 Score=420.21 Aligned_cols=330 Identities=20% Similarity=0.250 Sum_probs=263.3
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHH
Q 011065 121 EFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTREL 200 (494)
Q Consensus 121 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~l 200 (494)
.|..+++++.+...+...++-.|+++|.++|+.+..+++++++||||||||++|.+|++..+... .+++|++|+++|
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g---~rvlvl~PtraL 239 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK---QRVIYTSPIKAL 239 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTT---CEEEEEESSHHH
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcC---CeEEEEcCcHHH
Confidence 56666777666666655666689999999999999999999999999999999999999988543 489999999999
Q ss_pred HHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcH
Q 011065 201 ALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQ 280 (494)
Q Consensus 201 a~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~ 280 (494)
+.|+++.+.++.. .++.++|+.... ..++|+|+||++|.+++..+...+.++++|||||||++.+.+|.
T Consensus 240 a~Q~~~~l~~~~~----~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg 308 (1108)
T 3l9o_A 240 SNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERG 308 (1108)
T ss_dssp HHHHHHHHHHHTS----SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHH
T ss_pred HHHHHHHHHHHhC----CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchH
Confidence 9999999988764 577788887643 56899999999999998887777899999999999999998899
Q ss_pred HHHHHHHHHCCCCCcEEEEEeecCcc--hHHHHHhhcCCCeEEEecccccccceeEEEE---------eehh--------
Q 011065 281 PSVEQLIRFLPANRQILMFSATFPVT--VKDFKDKYLQKPYVINLMDELTLKGITQYYA---------FVEE-------- 341 (494)
Q Consensus 281 ~~~~~~~~~~~~~~~~i~~SATl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-------- 341 (494)
..+..++..++.+.++|+||||++.. ...+.......+..+....... ..+..++. ..+.
T Consensus 309 ~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp-~pl~~~~~~~~~~~~~~~vd~~~~~~~~~ 387 (1108)
T 3l9o_A 309 VVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP-TPLQHYLFPAHGDGIYLVVDEKSTFREEN 387 (1108)
T ss_dssp HHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCS-SCEEEEEEETTSSCCEEEEETTTEECHHH
T ss_pred HHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc-ccceEEEeecCCcceeeeeccccchhhhh
Confidence 99999999999999999999998765 3355555555554433222111 11111111 0000
Q ss_pred --------------------------------------hhHHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCc
Q 011065 342 --------------------------------------RQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYS 383 (494)
Q Consensus 342 --------------------------------------~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~ 383 (494)
..+...+...+.....+++||||+++..|+.++..|...++.
T Consensus 388 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~ 467 (1108)
T 3l9o_A 388 FQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFN 467 (1108)
T ss_dssp HHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHH
T ss_pred HHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCC
Confidence 122233444444556679999999999999999988653222
Q ss_pred ---------------------------------------EEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCC
Q 011065 384 ---------------------------------------CFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQ 424 (494)
Q Consensus 384 ---------------------------------------~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~ 424 (494)
+.++||+|++.+|..+++.|++|.++|||||+++++|||+|
T Consensus 468 ~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP 547 (1108)
T 3l9o_A 468 SDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMP 547 (1108)
T ss_dssp CC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC-
T ss_pred CHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCC
Confidence 79999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCC--------CCCHHHHHHHhccccCCC--CcceEEEEecccc
Q 011065 425 AVNVVINFDF--------PKNSETYLHRVGRSGRFG--HLGLAVNLITYED 465 (494)
Q Consensus 425 ~v~~VI~~~~--------p~s~~~~~Qr~GRagR~g--~~g~~~~l~~~~~ 465 (494)
++++||+++. |.|..+|+||+|||||.| ..|.||+++++..
T Consensus 548 ~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~ 598 (1108)
T 3l9o_A 548 AKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 598 (1108)
T ss_dssp -CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCC
T ss_pred CceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Confidence 9999997765 448889999999999999 6899999998763
No 23
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.8e-47 Score=411.62 Aligned_cols=350 Identities=18% Similarity=0.184 Sum_probs=229.5
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCC--ceEEEEEcCcHHHHHHHHHHHHH
Q 011065 133 MGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNN--VIQVVILVPTRELALQTSQVCKE 210 (494)
Q Consensus 133 ~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~--~~~~lil~P~~~la~q~~~~~~~ 210 (494)
..+...||..|+++|.++++.++.++++|+++|||+|||++|++|++..+..... +.++||++|+++|+.|+.+.+++
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~ 83 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSK 83 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 4566778999999999999999999999999999999999999999988765432 25899999999999999999999
Q ss_pred HhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCc-cccccceEEecccccccCCC-cHHHHHHHHH
Q 011065 211 LGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVC-ILKDCSMLVMDEADKLLSPE-FQPSVEQLIR 288 (494)
Q Consensus 211 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~-~l~~~~~iViDEah~~~~~~-~~~~~~~~~~ 288 (494)
++...++.+..++|+.........+...++|+|+||++|.+.+..... .+.++++|||||||++.... +...+...+.
T Consensus 84 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~ 163 (696)
T 2ykg_A 84 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLD 163 (696)
T ss_dssp HTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred HhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHH
Confidence 998888999999998865544444445789999999999998887665 68899999999999987543 2223322332
Q ss_pred H-----CCCCCcEEEEEeecCc-------c-hHHHH---------------------HhhcCCCeEEEecccc-------
Q 011065 289 F-----LPANRQILMFSATFPV-------T-VKDFK---------------------DKYLQKPYVINLMDEL------- 327 (494)
Q Consensus 289 ~-----~~~~~~~i~~SATl~~-------~-~~~~~---------------------~~~~~~~~~~~~~~~~------- 327 (494)
. .+...++|+||||+.. . ...+. ..+...|.........
T Consensus 164 ~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs 243 (696)
T 2ykg_A 164 QKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFK 243 (696)
T ss_dssp HHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHH
T ss_pred HhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHH
Confidence 2 2467899999999861 1 11111 1111122111000000
Q ss_pred -cc-----------------------------------------------------------------------------
Q 011065 328 -TL----------------------------------------------------------------------------- 329 (494)
Q Consensus 328 -~~----------------------------------------------------------------------------- 329 (494)
..
T Consensus 244 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 323 (696)
T 2ykg_A 244 YIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDAL 323 (696)
T ss_dssp HHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHH
Confidence 00
Q ss_pred ---------------------------cceeEEEEe----------------ehhhhHHHHHHHHHHhc----CCCcEEE
Q 011065 330 ---------------------------KGITQYYAF----------------VEERQKVHCLNTLFSKL----QINQSII 362 (494)
Q Consensus 330 ---------------------------~~~~~~~~~----------------~~~~~k~~~l~~ll~~~----~~~~~lV 362 (494)
..+.+.+.. .....|...|..++... ..+++||
T Consensus 324 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~II 403 (696)
T 2ykg_A 324 IISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 403 (696)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEE
T ss_pred hccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEE
Confidence 000000000 01234666677777655 5679999
Q ss_pred EecChhHHHHHHHHHHHcC----CcEEEE--------ccCCCHHHHHHHHHHhhc-CCccEEEEcCcccccCCCCCCCEE
Q 011065 363 FCNSVNRVELLAKKITELG----YSCFYI--------HAKMLQDHRNRVFHDFRN-GACRNLVCTDLFTRGIDIQAVNVV 429 (494)
Q Consensus 363 F~~~~~~~~~l~~~L~~~~----~~~~~~--------~~~~~~~~r~~i~~~f~~-g~~~vlvaT~~~~~Gidi~~v~~V 429 (494)
||+++..++.+++.|...+ +.+..+ |++|++.+|..+++.|++ |..+|||||+++++|||+|++++|
T Consensus 404 F~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~V 483 (696)
T 2ykg_A 404 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLV 483 (696)
T ss_dssp ECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSEE
T ss_pred EeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEE
Confidence 9999999999999999987 788888 569999999999999998 999999999999999999999999
Q ss_pred EEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHH----HHHhCCCCccCC
Q 011065 430 INFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRI----EQELGTEIKQIP 484 (494)
Q Consensus 430 I~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l----~~~~~~~~~~~~ 484 (494)
|+||+|.|..+|+||+|| ||. ++|.|+.|++..+......+ ++.++..+.+++
T Consensus 484 I~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 540 (696)
T 2ykg_A 484 ILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQ 540 (696)
T ss_dssp EEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999 998 68999999998876554444 444444444443
No 24
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.9e-45 Score=384.53 Aligned_cols=326 Identities=18% Similarity=0.239 Sum_probs=201.4
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCC--ceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011065 140 FERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNN--VIQVVILVPTRELALQTSQVCKELGKHLNI 217 (494)
Q Consensus 140 ~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~--~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (494)
.-.|+|+|.++++.++.++++++++|||||||++|++|++..+..... +.++||+||+++|+.|+.+.++++....++
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 84 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 84 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 347999999999999999999999999999999999999998876432 558999999999999999999999988899
Q ss_pred EEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCc-cccccceEEecccccccCCCcHHHH-HHHHHH-C---C
Q 011065 218 QVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVC-ILKDCSMLVMDEADKLLSPEFQPSV-EQLIRF-L---P 291 (494)
Q Consensus 218 ~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~-~l~~~~~iViDEah~~~~~~~~~~~-~~~~~~-~---~ 291 (494)
.+..++|+.........+..+++|+|+||++|.+++..... .+.++++||+||||++.+......+ ..++.. + .
T Consensus 85 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~ 164 (556)
T 4a2p_A 85 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSAS 164 (556)
T ss_dssp CEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC--
T ss_pred eEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhcccC
Confidence 99999999876655555556789999999999998887766 6889999999999999876543222 222222 1 3
Q ss_pred CCCcEEEEEeecCcc-----------hHHHHH------------------hhcCCCeEEEecccccccc--------e--
Q 011065 292 ANRQILMFSATFPVT-----------VKDFKD------------------KYLQKPYVINLMDELTLKG--------I-- 332 (494)
Q Consensus 292 ~~~~~i~~SATl~~~-----------~~~~~~------------------~~~~~~~~~~~~~~~~~~~--------~-- 332 (494)
+..++++||||++.. +..+.. .+...+............. +
T Consensus 165 ~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (556)
T 4a2p_A 165 QLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMS 244 (556)
T ss_dssp -CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHHH
T ss_pred CCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHHHH
Confidence 568899999998431 111111 1111221111100000000 0
Q ss_pred ------------eEE-------EE------ee------------------------------------------------
Q 011065 333 ------------TQY-------YA------FV------------------------------------------------ 339 (494)
Q Consensus 333 ------------~~~-------~~------~~------------------------------------------------ 339 (494)
... +. +.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 324 (556)
T 4a2p_A 245 ETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARII 324 (556)
T ss_dssp HHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 000 00 00
Q ss_pred --------------------------------------------hhhhHHHHHHHHHHh----cCCCcEEEEecChhHHH
Q 011065 340 --------------------------------------------EERQKVHCLNTLFSK----LQINQSIIFCNSVNRVE 371 (494)
Q Consensus 340 --------------------------------------------~~~~k~~~l~~ll~~----~~~~~~lVF~~~~~~~~ 371 (494)
....|...|..++.. ....++||||+++..++
T Consensus 325 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~ 404 (556)
T 4a2p_A 325 DALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVS 404 (556)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHH
Confidence 012345555555543 45679999999999999
Q ss_pred HHHHHHHHc------------CCcEEEEccCCCHHHHHHHHHHhhc-CCccEEEEcCcccccCCCCCCCEEEEcCCCCCH
Q 011065 372 LLAKKITEL------------GYSCFYIHAKMLQDHRNRVFHDFRN-GACRNLVCTDLFTRGIDIQAVNVVINFDFPKNS 438 (494)
Q Consensus 372 ~l~~~L~~~------------~~~~~~~~~~~~~~~r~~i~~~f~~-g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~ 438 (494)
.+++.|.+. |.....+||+|++.+|..+++.|++ |..+|||||+++++|||+|++++||+||+|+|+
T Consensus 405 ~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~ 484 (556)
T 4a2p_A 405 ALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNV 484 (556)
T ss_dssp HHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCCSCH
T ss_pred HHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCH
Confidence 999999875 4556677888999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCcceEEEEecccchH
Q 011065 439 ETYLHRVGRSGRFGHLGLAVNLITYEDRF 467 (494)
Q Consensus 439 ~~~~Qr~GRagR~g~~g~~~~l~~~~~~~ 467 (494)
..|+||+|| ||. .+|.|++|++..+..
T Consensus 485 ~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 485 TKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp HHHHHC----------CCEEEEESCHHHH
T ss_pred HHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 999999999 999 789999999987653
No 25
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.7e-45 Score=386.01 Aligned_cols=329 Identities=18% Similarity=0.198 Sum_probs=229.9
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCC--ceEEEEEcCcHHHHHHHHHHHHHHhccCCcEE
Q 011065 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNN--VIQVVILVPTRELALQTSQVCKELGKHLNIQV 219 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~--~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~ 219 (494)
.|+++|.++++.++.++++++++|||||||++|++|++..+..... +.++||+||+++|+.|+.+.+.++....++.+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 6899999999999999999999999999999999999998876432 55899999999999999999999998889999
Q ss_pred EEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCc-cccccceEEecccccccCCC-cHHHHHHHHHHC-----CC
Q 011065 220 MVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVC-ILKDCSMLVMDEADKLLSPE-FQPSVEQLIRFL-----PA 292 (494)
Q Consensus 220 ~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~-~l~~~~~iViDEah~~~~~~-~~~~~~~~~~~~-----~~ 292 (494)
..++|+.........+..+++|+|+||++|..++..... .+.++++||+||||++.+.. +...+...+... ..
T Consensus 84 ~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (555)
T 3tbk_A 84 ASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDP 163 (555)
T ss_dssp EEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSC
T ss_pred EEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccCC
Confidence 999999876655455556789999999999998887665 68899999999999987754 333333333322 24
Q ss_pred CCcEEEEEeecCcc----hHHHH------HhhcCCCeEEEeccc-------ccccceeEEEEe-----------------
Q 011065 293 NRQILMFSATFPVT----VKDFK------DKYLQKPYVINLMDE-------LTLKGITQYYAF----------------- 338 (494)
Q Consensus 293 ~~~~i~~SATl~~~----~~~~~------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~----------------- 338 (494)
..+++++|||++.. ..+.. ...+....+...... ...+........
T Consensus 164 ~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (555)
T 3tbk_A 164 LPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMKE 243 (555)
T ss_dssp CCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHHHH
T ss_pred CCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHHHH
Confidence 57899999998532 11111 111221111110000 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 011065 339 -------------------------------------------------------------------------------- 338 (494)
Q Consensus 339 -------------------------------------------------------------------------------- 338 (494)
T Consensus 244 ~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 323 (555)
T 3tbk_A 244 TEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMT 323 (555)
T ss_dssp HHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence
Q ss_pred -------------------------------------------ehhhhHHHHHHHHHHh----cCCCcEEEEecChhHHH
Q 011065 339 -------------------------------------------VEERQKVHCLNTLFSK----LQINQSIIFCNSVNRVE 371 (494)
Q Consensus 339 -------------------------------------------~~~~~k~~~l~~ll~~----~~~~~~lVF~~~~~~~~ 371 (494)
.....|...+..++.. ....++||||+++..++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~ 403 (555)
T 3tbk_A 324 DALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVD 403 (555)
T ss_dssp HHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHH
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHH
Confidence 0012345555555544 35689999999999999
Q ss_pred HHHHHHHHcC------------CcEEEEccCCCHHHHHHHHHHhhc-CCccEEEEcCcccccCCCCCCCEEEEcCCCCCH
Q 011065 372 LLAKKITELG------------YSCFYIHAKMLQDHRNRVFHDFRN-GACRNLVCTDLFTRGIDIQAVNVVINFDFPKNS 438 (494)
Q Consensus 372 ~l~~~L~~~~------------~~~~~~~~~~~~~~r~~i~~~f~~-g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~ 438 (494)
.+++.|...+ .....+||+|++.+|..+++.|++ |..+|||||+++++|||+|++++||+||+|+|+
T Consensus 404 ~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~ 483 (555)
T 3tbk_A 404 ALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNV 483 (555)
T ss_dssp HHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCSSC
T ss_pred HHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCH
Confidence 9999999863 345566779999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCcceEEEEecccchHHHHHH
Q 011065 439 ETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRI 472 (494)
Q Consensus 439 ~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l 472 (494)
.+|+||+|| ||. .+|.|++|+++.+......+
T Consensus 484 ~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 484 IKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp CCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred HHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 999999999 999 79999999998876555544
No 26
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-44 Score=392.71 Aligned_cols=320 Identities=21% Similarity=0.281 Sum_probs=254.7
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 011065 137 EKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLN 216 (494)
Q Consensus 137 ~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~ 216 (494)
..+| .|+++|.++++.+..++++++++|||||||++|.++++..+.. +.++||++|+++|+.|+.+.+.++..
T Consensus 82 ~~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~---g~rvL~l~PtkaLa~Q~~~~l~~~~~--- 154 (1010)
T 2xgj_A 82 TYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKALSNQKYRELLAEFG--- 154 (1010)
T ss_dssp CCSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHHS---
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc---CCeEEEECChHHHHHHHHHHHHHHhC---
Confidence 3456 4999999999999999999999999999999999999888754 34899999999999999999988764
Q ss_pred cEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcE
Q 011065 217 IQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQI 296 (494)
Q Consensus 217 ~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~ 296 (494)
.++.++|+.... ..++|+|+||++|..++.++...+.++++|||||||++.+..+...+..++..++.+.++
T Consensus 155 -~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~i 226 (1010)
T 2xgj_A 155 -DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRY 226 (1010)
T ss_dssp -CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEE
T ss_pred -CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeE
Confidence 577788887654 467999999999999888777778999999999999999998999999999999999999
Q ss_pred EEEEeecCcchH--HHHHhhcCCCeEEEecccccccceeEEEEe---------ehh------------------------
Q 011065 297 LMFSATFPVTVK--DFKDKYLQKPYVINLMDELTLKGITQYYAF---------VEE------------------------ 341 (494)
Q Consensus 297 i~~SATl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~------------------------ 341 (494)
|+||||++.... .+.......+..+....... ..+.+++.. .+.
T Consensus 227 l~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp-~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 305 (1010)
T 2xgj_A 227 VFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP-TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDP 305 (1010)
T ss_dssp EEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCS-SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-------
T ss_pred EEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc-ccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccc
Confidence 999999875322 23333334343332221111 112222111 000
Q ss_pred ----------------------hhHHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCC-----------------
Q 011065 342 ----------------------RQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGY----------------- 382 (494)
Q Consensus 342 ----------------------~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~----------------- 382 (494)
......+...+......++||||+++..|+.++..|...++
T Consensus 306 ~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~ 385 (1010)
T 2xgj_A 306 NSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAI 385 (1010)
T ss_dssp -----------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 11122344444444566999999999999999998876433
Q ss_pred ----------------------cEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEE----cCC--
Q 011065 383 ----------------------SCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVIN----FDF-- 434 (494)
Q Consensus 383 ----------------------~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~----~~~-- 434 (494)
.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||.
T Consensus 386 ~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~ 465 (1010)
T 2xgj_A 386 ALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQ 465 (1010)
T ss_dssp TTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSC
T ss_pred HhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcC
Confidence 2789999999999999999999999999999999999999999999999 998
Q ss_pred --CCCHHHHHHHhccccCCCC--cceEEEEeccc-chHHHHHH
Q 011065 435 --PKNSETYLHRVGRSGRFGH--LGLAVNLITYE-DRFNLYRI 472 (494)
Q Consensus 435 --p~s~~~~~Qr~GRagR~g~--~g~~~~l~~~~-~~~~~~~l 472 (494)
|.|+.+|.||+|||||.|. .|.|++|+++. +...+.++
T Consensus 466 ~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 466 FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred CccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 8999999999999999996 59999999866 44444443
No 27
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=2.1e-44 Score=398.32 Aligned_cols=317 Identities=19% Similarity=0.196 Sum_probs=257.3
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011065 138 KGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI 217 (494)
Q Consensus 138 ~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (494)
.|| .|+++|.++++.++.|+|+++++|||||||++|+++++..+. .+.++||++||++|+.|+.+.++.++ ..++
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~---~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~i 149 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---KGKKSALVFPTVTLVKQTLERLQKLA-DEKV 149 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT---TTCCEEEEESSHHHHHHHHHHHHTTS-CTTS
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh---cCCeEEEEechHHHHHHHHHHHHHhh-CCCC
Confidence 577 699999999999999999999999999999998888887763 34589999999999999999999987 7788
Q ss_pred EEEEEECCCCh---HHHHHHhcCC-CeEEEEchHHHHHhHhcCCccccccceEEecccccccC-----------CCcHHH
Q 011065 218 QVMVTTGGTSL---KDDIMRLYQP-VHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS-----------PEFQPS 282 (494)
Q Consensus 218 ~~~~~~g~~~~---~~~~~~~~~~-~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~-----------~~~~~~ 282 (494)
.+..++|+... ..+...+..+ ++|+|+||++|.+++.. ..+.++++||+||||++.. .+|...
T Consensus 150 ~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~ 227 (1104)
T 4ddu_A 150 KIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEE 227 (1104)
T ss_dssp CEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHH
T ss_pred eEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcCCCHH
Confidence 99999999987 5556666655 89999999999887764 5578999999999987554 677777
Q ss_pred -HHHHHHHCC-----------CCCcEEEEEee-cCcchHH-HHHhhcCCCeEEEe-cccccccceeEEEEeehhhhHHHH
Q 011065 283 -VEQLIRFLP-----------ANRQILMFSAT-FPVTVKD-FKDKYLQKPYVINL-MDELTLKGITQYYAFVEERQKVHC 347 (494)
Q Consensus 283 -~~~~~~~~~-----------~~~~~i~~SAT-l~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~~~ 347 (494)
+..++..++ .+.|++++||| .|..+.. +....+. +.+ .......++.+.+... .+...
T Consensus 228 ~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~---~k~~~ 300 (1104)
T 4ddu_A 228 IIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS---RSKEK 300 (1104)
T ss_dssp HHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC---CCHHH
T ss_pred HHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec---CHHHH
Confidence 788888776 78999999999 5655543 3333333 111 1223344555555444 45556
Q ss_pred HHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEE-EEccCCCHHHHHHHHHHhhcCCccEEEE----cCcccccCC
Q 011065 348 LNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCF-YIHAKMLQDHRNRVFHDFRNGACRNLVC----TDLFTRGID 422 (494)
Q Consensus 348 l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~r~~i~~~f~~g~~~vlva----T~~~~~Gid 422 (494)
+..++... .+++||||++++.++.++..|...++.+. .+||. |.+ ++.|++|+.+|||| |+++++|||
T Consensus 301 L~~ll~~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGID 373 (1104)
T 4ddu_A 301 LVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVD 373 (1104)
T ss_dssp HHHHHHHH-CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCC
T ss_pred HHHHHHhc-CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCc
Confidence 66776664 48999999999999999999999999998 99983 555 99999999999999 999999999
Q ss_pred CCC-CCEEEEcCCCC-----------------------------------------------------------------
Q 011065 423 IQA-VNVVINFDFPK----------------------------------------------------------------- 436 (494)
Q Consensus 423 i~~-v~~VI~~~~p~----------------------------------------------------------------- 436 (494)
+|+ |++|||||+|.
T Consensus 374 ip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~ 453 (1104)
T 4ddu_A 374 LPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDE 453 (1104)
T ss_dssp CTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETT
T ss_pred CCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCC
Confidence 999 99999999998
Q ss_pred -------CHHHHHHHhccccCCCC----cceEEEEecccchHHHHHHHHHhC
Q 011065 437 -------NSETYLHRVGRSGRFGH----LGLAVNLITYEDRFNLYRIEQELG 477 (494)
Q Consensus 437 -------s~~~~~Qr~GRagR~g~----~g~~~~l~~~~~~~~~~~l~~~~~ 477 (494)
+..+|+||+||+||.|. .|.+++++ +|...+..|.+.++
T Consensus 454 ~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 454 DLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 503 (1104)
T ss_dssp TTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred eeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHh
Confidence 78899999999999654 34555555 77777788887774
No 28
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=6.6e-44 Score=387.71 Aligned_cols=328 Identities=18% Similarity=0.229 Sum_probs=209.3
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCC--ceEEEEEcCcHHHHHHHHHHHHHHhccC
Q 011065 138 KGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNN--VIQVVILVPTRELALQTSQVCKELGKHL 215 (494)
Q Consensus 138 ~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~--~~~~lil~P~~~la~q~~~~~~~~~~~~ 215 (494)
.|+..|+++|.++++.++.++++++++|||||||++|++|++..+..... +.++|||||+++|+.|+.+.++++....
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~ 323 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 323 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccC
Confidence 46789999999999999999999999999999999999999998876431 5589999999999999999999999888
Q ss_pred CcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCc-cccccceEEecccccccCCCc-HHHHHHHHHH----
Q 011065 216 NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVC-ILKDCSMLVMDEADKLLSPEF-QPSVEQLIRF---- 289 (494)
Q Consensus 216 ~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~-~l~~~~~iViDEah~~~~~~~-~~~~~~~~~~---- 289 (494)
++.+..++|+.........+..+++|+|+||++|.+.+..... .+.++++|||||||++..... ...+..++..
T Consensus 324 ~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~~ 403 (797)
T 4a2q_A 324 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNS 403 (797)
T ss_dssp TCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHTT
T ss_pred CceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhhcc
Confidence 9999999999877665555566789999999999998887665 688999999999999877543 2222233322
Q ss_pred CCCCCcEEEEEeecCc-----------chHHH------------------HHhhcCCCeEEEecccc-cccc--------
Q 011065 290 LPANRQILMFSATFPV-----------TVKDF------------------KDKYLQKPYVINLMDEL-TLKG-------- 331 (494)
Q Consensus 290 ~~~~~~~i~~SATl~~-----------~~~~~------------------~~~~~~~~~~~~~~~~~-~~~~-------- 331 (494)
..+..++++||||+.. .+..+ ...++..+......... ....
T Consensus 404 ~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 483 (797)
T 4a2q_A 404 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNL 483 (797)
T ss_dssp CCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHH
T ss_pred CCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHH
Confidence 1456889999999842 11111 11112222111100000 0000
Q ss_pred ----------------eeEE----EE------ee----------------------------------------------
Q 011065 332 ----------------ITQY----YA------FV---------------------------------------------- 339 (494)
Q Consensus 332 ----------------~~~~----~~------~~---------------------------------------------- 339 (494)
+... +. +.
T Consensus 484 ~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 563 (797)
T 4a2q_A 484 MSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDAR 563 (797)
T ss_dssp HHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 0000 00 00
Q ss_pred ----------------------------------------------hhhhHHHHHHHHHHh----cCCCcEEEEecChhH
Q 011065 340 ----------------------------------------------EERQKVHCLNTLFSK----LQINQSIIFCNSVNR 369 (494)
Q Consensus 340 ----------------------------------------------~~~~k~~~l~~ll~~----~~~~~~lVF~~~~~~ 369 (494)
....|...|..++.. ....++||||+++..
T Consensus 564 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~ 643 (797)
T 4a2q_A 564 IIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRAL 643 (797)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHH
T ss_pred HHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHH
Confidence 012244555555544 456899999999999
Q ss_pred HHHHHHHHHHc------------CCcEEEEccCCCHHHHHHHHHHhhc-CCccEEEEcCcccccCCCCCCCEEEEcCCCC
Q 011065 370 VELLAKKITEL------------GYSCFYIHAKMLQDHRNRVFHDFRN-GACRNLVCTDLFTRGIDIQAVNVVINFDFPK 436 (494)
Q Consensus 370 ~~~l~~~L~~~------------~~~~~~~~~~~~~~~r~~i~~~f~~-g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~ 436 (494)
++.+++.|.+. |.....+||+|++.+|..+++.|++ |..+|||||+++++|||+|++++||+||+|+
T Consensus 644 ~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~ 723 (797)
T 4a2q_A 644 VSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSG 723 (797)
T ss_dssp HHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESCCS
T ss_pred HHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCC
Confidence 99999999873 5566778999999999999999999 9999999999999999999999999999999
Q ss_pred CHHHHHHHhccccCCCCcceEEEEecccchH
Q 011065 437 NSETYLHRVGRSGRFGHLGLAVNLITYEDRF 467 (494)
Q Consensus 437 s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~ 467 (494)
|+..|+||+|| ||. ++|.|++|++..+..
T Consensus 724 s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 724 NVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp CHHHHHTC---------CCCEEEEECCHHHH
T ss_pred CHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 99999999999 999 789999999987543
No 29
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=8.8e-44 Score=371.36 Aligned_cols=320 Identities=18% Similarity=0.240 Sum_probs=250.5
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 011065 137 EKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLN 216 (494)
Q Consensus 137 ~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~ 216 (494)
..|| .|+++|..++|.++.|+ |+.++||+|||++|.+|++..... +..++||+||++||.|..+++..+...++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~---g~~vlVltptreLA~qd~e~~~~l~~~lg 152 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT---GKGVHVVTVNEYLASRDAEQMGKIFEFLG 152 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT---SSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 4699 99999999999999999 999999999999999999844332 33799999999999999999999999999
Q ss_pred cEEEEEECCCChHHHHHHhcCCCeEEEEchHHH-HHhHhcC------CccccccceEEeccccccc-CCC----------
Q 011065 217 IQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRI-LDLSKKG------VCILKDCSMLVMDEADKLL-SPE---------- 278 (494)
Q Consensus 217 ~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~------~~~l~~~~~iViDEah~~~-~~~---------- 278 (494)
+++++++|+.+....... .+++|+|+||++| ++++... ...+..+.++||||||+|+ +..
T Consensus 153 l~v~~i~gg~~~~~r~~~--~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~ 230 (844)
T 1tf5_A 153 LTVGLNLNSMSKDEKREA--YAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQA 230 (844)
T ss_dssp CCEEECCTTSCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEE
T ss_pred CeEEEEeCCCCHHHHHHh--cCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCc
Confidence 999999999876544333 4689999999999 5554432 3457889999999999987 543
Q ss_pred -----cHHHHHHHHHHCC---------CCCcEE-----------------EEEeecCcchHHHH-----HhhcC-C-CeE
Q 011065 279 -----FQPSVEQLIRFLP---------ANRQIL-----------------MFSATFPVTVKDFK-----DKYLQ-K-PYV 320 (494)
Q Consensus 279 -----~~~~~~~~~~~~~---------~~~~~i-----------------~~SATl~~~~~~~~-----~~~~~-~-~~~ 320 (494)
|...+..++..++ +..|++ ++|||++.....+. ..++. + .++
T Consensus 231 ~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYi 310 (844)
T 1tf5_A 231 AKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYV 310 (844)
T ss_dssp ECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEE
T ss_pred ccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceE
Confidence 6678888888886 367776 88999764222221 11221 1 111
Q ss_pred EE-----eccc-------------------------------cccccee-------------------------------
Q 011065 321 IN-----LMDE-------------------------------LTLKGIT------------------------------- 333 (494)
Q Consensus 321 ~~-----~~~~-------------------------------~~~~~~~------------------------------- 333 (494)
+. +.++ .....+.
T Consensus 311 v~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l 390 (844)
T 1tf5_A 311 VEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNM 390 (844)
T ss_dssp EETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred EecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCC
Confidence 10 0000 0000000
Q ss_pred ----------------EEEEeehhhhHHHHHHHHHHh--cCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHH
Q 011065 334 ----------------QYYAFVEERQKVHCLNTLFSK--LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDH 395 (494)
Q Consensus 334 ----------------~~~~~~~~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 395 (494)
..+.+.....|...+...+.. ....++||||+|++.++.|+..|.+.|+.+..+||.+.+.+
T Consensus 391 ~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rE 470 (844)
T 1tf5_A 391 QVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHERE 470 (844)
T ss_dssp CEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHH
T ss_pred ceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHH
Confidence 112344566788888777654 24568999999999999999999999999999999998888
Q ss_pred HHHHHHHhhcCCccEEEEcCcccccCCCC--------CCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccch
Q 011065 396 RNRVFHDFRNGACRNLVCTDLFTRGIDIQ--------AVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDR 466 (494)
Q Consensus 396 r~~i~~~f~~g~~~vlvaT~~~~~Gidi~--------~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~ 466 (494)
+..+...++.| .|+||||+|+||+||+ ++.+||+++.|.|...|+||+||+||.|.+|.++.|++..|.
T Consensus 471 r~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 471 AQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp HHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred HHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 87666666665 6999999999999999 788999999999999999999999999999999999997764
No 30
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2e-43 Score=363.90 Aligned_cols=321 Identities=19% Similarity=0.217 Sum_probs=247.8
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEE
Q 011065 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~ 221 (494)
.|+++|.++++.++.+ ++++.+|||+|||++++.+++..+.. .+.++||+||+++|+.|+.+.+.++.......+..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~--~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~ 85 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK--YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVA 85 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH--SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEE
Confidence 6899999999999999 99999999999999999999887762 33489999999999999999999887544557888
Q ss_pred EECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEe
Q 011065 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSA 301 (494)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 301 (494)
++|+....... .....++|+|+||+.|...+......+.++++||+||||++.+......+...+.......++++|||
T Consensus 86 ~~g~~~~~~~~-~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTa 164 (494)
T 1wp9_A 86 LTGEKSPEERS-KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTA 164 (494)
T ss_dssp ECSCSCHHHHH-HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEES
T ss_pred eeCCcchhhhh-hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEec
Confidence 88887765432 23346799999999999988877777889999999999998765444445555555557888999999
Q ss_pred ecCcchHH---HHHhhcCCCeEEEecccc------cccceeEEEE-----------------------------------
Q 011065 302 TFPVTVKD---FKDKYLQKPYVINLMDEL------TLKGITQYYA----------------------------------- 337 (494)
Q Consensus 302 Tl~~~~~~---~~~~~~~~~~~~~~~~~~------~~~~~~~~~~----------------------------------- 337 (494)
|+...... +...+............. ..........
T Consensus 165 Tp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (494)
T 1wp9_A 165 SPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSP 244 (494)
T ss_dssp CSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCT
T ss_pred CCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 98744333 222221111110000000 0000000000
Q ss_pred -------------------------------------------------------e------------------------
Q 011065 338 -------------------------------------------------------F------------------------ 338 (494)
Q Consensus 338 -------------------------------------------------------~------------------------ 338 (494)
+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (494)
T 1wp9_A 245 DIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKR 324 (494)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHH
T ss_pred CcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHH
Confidence 0
Q ss_pred --------------ehhhhHHHHHHHHHHh----cCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEcc--------CCC
Q 011065 339 --------------VEERQKVHCLNTLFSK----LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHA--------KML 392 (494)
Q Consensus 339 --------------~~~~~k~~~l~~ll~~----~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~--------~~~ 392 (494)
.....|...+..++.. ....++||||+++..++.+++.|.+.++.+..+|| +++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~ 404 (494)
T 1wp9_A 325 MKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLS 404 (494)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCC
Confidence 0122355566666665 46789999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchH
Q 011065 393 QDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRF 467 (494)
Q Consensus 393 ~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~ 467 (494)
..+|..+++.|++|..+|||||+++++|+|+|++++||++++|+++..|.||+||+||.|+ |.++.|+++.+..
T Consensus 405 ~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 405 QREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRD 478 (494)
T ss_dssp CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHH
T ss_pred HHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999997 9999999987543
No 31
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=2.1e-44 Score=398.74 Aligned_cols=324 Identities=16% Similarity=0.247 Sum_probs=257.5
Q ss_pred HHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHH
Q 011065 132 LMGIFE-KGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKE 210 (494)
Q Consensus 132 ~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~ 210 (494)
.+.+.+ .||. | ++|.++|+.++.|+|+++++|||||||+ |.+|++..+... +.++||++||++|+.|+.+.+++
T Consensus 47 ~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~--~~~~lil~PtreLa~Q~~~~l~~ 121 (1054)
T 1gku_B 47 VEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK--GKRCYVIFPTSLLVIQAAETIRK 121 (1054)
T ss_dssp HHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT--SCCEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc--CCeEEEEeccHHHHHHHHHHHHH
Confidence 344443 6998 9 9999999999999999999999999998 888888877653 45899999999999999999999
Q ss_pred HhccCCc----EEEEEECCCChHHH---HHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHH
Q 011065 211 LGKHLNI----QVMVTTGGTSLKDD---IMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSV 283 (494)
Q Consensus 211 ~~~~~~~----~~~~~~g~~~~~~~---~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~ 283 (494)
++...++ .+..++|+.....+ ...+.. ++|+|+||++|.+++.+ +.++++||+||||++++ +...+
T Consensus 122 l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~~ 194 (1054)
T 1gku_B 122 YAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKNV 194 (1054)
T ss_dssp HHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHHH
T ss_pred HHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--ccccH
Confidence 9988888 89999999887663 334444 89999999999987765 66899999999999987 67778
Q ss_pred HHHHHHC-----------CCCCcEEEEEeecCcchHHHHHhhcCCCeEEEec-ccccccceeEEEEeehhhhHHHHHHHH
Q 011065 284 EQLIRFL-----------PANRQILMFSATFPVTVKDFKDKYLQKPYVINLM-DELTLKGITQYYAFVEERQKVHCLNTL 351 (494)
Q Consensus 284 ~~~~~~~-----------~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l~~l 351 (494)
..++..+ +...|++++|||++.. ..+...++.++..+.+. .......+.+.+. ...+...+..+
T Consensus 195 ~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~---~~~k~~~L~~l 270 (1054)
T 1gku_B 195 DKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV---NDESISTLSSI 270 (1054)
T ss_dssp HHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE---SCCCTTTTHHH
T ss_pred HHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe---chhHHHHHHHH
Confidence 8888776 3567899999999876 43333332222222221 1222234444433 34455666777
Q ss_pred HHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEE----cCcccccCCCCCC-
Q 011065 352 FSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC----TDLFTRGIDIQAV- 426 (494)
Q Consensus 352 l~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlva----T~~~~~Gidi~~v- 426 (494)
+... .+++||||++++.++.+++.|.+. +.+..+||++. .+++.|++|..+|||| |+++++|||+|+|
T Consensus 271 l~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI 343 (1054)
T 1gku_B 271 LEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERI 343 (1054)
T ss_dssp HTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTTC
T ss_pred Hhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcc
Confidence 7665 578999999999999999999988 99999999983 6889999999999999 9999999999995
Q ss_pred CEEEEcCCC-----------------------------------------------------------------------
Q 011065 427 NVVINFDFP----------------------------------------------------------------------- 435 (494)
Q Consensus 427 ~~VI~~~~p----------------------------------------------------------------------- 435 (494)
++||++|.|
T Consensus 344 ~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 423 (1054)
T 1gku_B 344 RFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIF 423 (1054)
T ss_dssp CEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEE
T ss_pred cEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceec
Confidence 999999999
Q ss_pred CCHHHHHHHhccccCCCCcc--eEEEEecccchHHHHHHHHHhCC
Q 011065 436 KNSETYLHRVGRSGRFGHLG--LAVNLITYEDRFNLYRIEQELGT 478 (494)
Q Consensus 436 ~s~~~~~Qr~GRagR~g~~g--~~~~l~~~~~~~~~~~l~~~~~~ 478 (494)
.+..+|+||+|||||.|..| .+++|+..+|...+..+++.++.
T Consensus 424 ~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 424 PDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp ECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred CcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999987665 48888888888888888888874
No 32
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=3.2e-43 Score=385.93 Aligned_cols=316 Identities=17% Similarity=0.221 Sum_probs=247.3
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEE
Q 011065 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~ 221 (494)
.|+++|.++|+.+++++++++++|||||||++|++++...+.. +.++||++|+++|+.|+.+.+.++.. ++.+..
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~---g~~vlvl~PtraLa~Q~~~~l~~~~~--~~~v~~ 113 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN---MTKTIYTSPIKALSNQKFRDFKETFD--DVNIGL 113 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHTTC----CCEEE
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHHcC--CCeEEE
Confidence 5899999999999999999999999999999999988877653 34899999999999999998887643 577888
Q ss_pred EECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEe
Q 011065 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSA 301 (494)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 301 (494)
++|+.... ..++|+|+||++|..++......+.++++|||||||++.+.++...+..++..++++.++|++||
T Consensus 114 l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSA 186 (997)
T 4a4z_A 114 ITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSA 186 (997)
T ss_dssp ECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEEC
T ss_pred EeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEEEEcC
Confidence 88887543 56899999999999988877777899999999999999999999999999999999999999999
Q ss_pred ecCcchHHHHHhhc---CCCeEEEecccccccceeEEE------------------------------------------
Q 011065 302 TFPVTVKDFKDKYL---QKPYVINLMDELTLKGITQYY------------------------------------------ 336 (494)
Q Consensus 302 Tl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~------------------------------------------ 336 (494)
|++... ++...+. ..+..+.... .....+.+++
T Consensus 187 T~~n~~-ef~~~l~~~~~~~~~vi~~~-~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 264 (997)
T 4a4z_A 187 TVPNTY-EFANWIGRTKQKNIYVISTP-KRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDN 264 (997)
T ss_dssp CCTTHH-HHHHHHHHHHTCCEEEEECS-SCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-------------
T ss_pred CCCChH-HHHHHHhcccCCceEEEecC-CCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccc
Confidence 987432 3333321 1111111110 0000111000
Q ss_pred ---------------------------------------------------EeehhhhHHHHHHHHHHhcCCCcEEEEec
Q 011065 337 ---------------------------------------------------AFVEERQKVHCLNTLFSKLQINQSIIFCN 365 (494)
Q Consensus 337 ---------------------------------------------------~~~~~~~k~~~l~~ll~~~~~~~~lVF~~ 365 (494)
.......+...+...+.....+++||||+
T Consensus 265 ~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~ 344 (997)
T 4a4z_A 265 GRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVF 344 (997)
T ss_dssp ----------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEEC
Confidence 00012233556666677777789999999
Q ss_pred ChhHHHHHHHHHHHcCC---------------------------------------cEEEEccCCCHHHHHHHHHHhhcC
Q 011065 366 SVNRVELLAKKITELGY---------------------------------------SCFYIHAKMLQDHRNRVFHDFRNG 406 (494)
Q Consensus 366 ~~~~~~~l~~~L~~~~~---------------------------------------~~~~~~~~~~~~~r~~i~~~f~~g 406 (494)
+++.|+.++..|...++ .+.++||+|++.+|..+++.|.+|
T Consensus 345 sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G 424 (997)
T 4a4z_A 345 SKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKG 424 (997)
T ss_dssp CHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCC
Confidence 99999999999976544 579999999999999999999999
Q ss_pred CccEEEEcCcccccCCCCCCCEEEEcCCCC---------CHHHHHHHhccccCCC--CcceEEEEec--ccchHHHHHH
Q 011065 407 ACRNLVCTDLFTRGIDIQAVNVVINFDFPK---------NSETYLHRVGRSGRFG--HLGLAVNLIT--YEDRFNLYRI 472 (494)
Q Consensus 407 ~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~---------s~~~~~Qr~GRagR~g--~~g~~~~l~~--~~~~~~~~~l 472 (494)
.++|||||+++++|||+|+ ..||+++.|. |..+|+||+|||||.| ..|.|++++. ..+...+..+
T Consensus 425 ~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 425 FIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp CCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHH
T ss_pred CCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHH
Confidence 9999999999999999999 6666666655 9999999999999988 5688888884 2334444443
No 33
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.5e-42 Score=380.79 Aligned_cols=326 Identities=18% Similarity=0.232 Sum_probs=208.5
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCC--ceEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 011065 139 GFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNN--VIQVVILVPTRELALQTSQVCKELGKHLN 216 (494)
Q Consensus 139 ~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~--~~~~lil~P~~~la~q~~~~~~~~~~~~~ 216 (494)
++..|+++|.++++.++.|+++++++|||||||++|++|++..+..... +.++|||+|+++|+.|+.+.++++....+
T Consensus 245 ~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 324 (936)
T 4a2w_A 245 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 324 (936)
T ss_dssp ---CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 5778999999999999999999999999999999999999988876431 45899999999999999999999988888
Q ss_pred cEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCc-cccccceEEecccccccCCC-cHHHHHHHHHH----C
Q 011065 217 IQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVC-ILKDCSMLVMDEADKLLSPE-FQPSVEQLIRF----L 290 (494)
Q Consensus 217 ~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~-~l~~~~~iViDEah~~~~~~-~~~~~~~~~~~----~ 290 (494)
+.+..++|+.........+...++|+|+||++|.+.+..... .+.++++||+||||++.... +...+..++.. .
T Consensus 325 ~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~~~ 404 (936)
T 4a2w_A 325 YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSA 404 (936)
T ss_dssp CCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhhccC
Confidence 999999999866654444445689999999999998887655 68899999999999987654 23333333332 1
Q ss_pred CCCCcEEEEEeecCcc-----------hHH------------------HHHhhcCCCeEEEeccccccc-----------
Q 011065 291 PANRQILMFSATFPVT-----------VKD------------------FKDKYLQKPYVINLMDELTLK----------- 330 (494)
Q Consensus 291 ~~~~~~i~~SATl~~~-----------~~~------------------~~~~~~~~~~~~~~~~~~~~~----------- 330 (494)
.+..++++||||+... +.. ....+...+............
T Consensus 405 ~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~ 484 (936)
T 4a2w_A 405 SQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLM 484 (936)
T ss_dssp SCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHHHH
Confidence 4568899999998421 111 111122222221110000000
Q ss_pred --------c------eeEE--EE--------ee-----------------------------------------------
Q 011065 331 --------G------ITQY--YA--------FV----------------------------------------------- 339 (494)
Q Consensus 331 --------~------~~~~--~~--------~~----------------------------------------------- 339 (494)
. +... .. +.
T Consensus 485 ~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~ 564 (936)
T 4a2w_A 485 SETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARI 564 (936)
T ss_dssp HHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchhH
Confidence 0 0000 00 00
Q ss_pred ---------------------------------------------hhhhHHHHHHHHHHh----cCCCcEEEEecChhHH
Q 011065 340 ---------------------------------------------EERQKVHCLNTLFSK----LQINQSIIFCNSVNRV 370 (494)
Q Consensus 340 ---------------------------------------------~~~~k~~~l~~ll~~----~~~~~~lVF~~~~~~~ 370 (494)
....|...|..++.. ....++||||+++..+
T Consensus 565 ~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~a 644 (936)
T 4a2w_A 565 IDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV 644 (936)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHH
Confidence 012244555556654 3457999999999999
Q ss_pred HHHHHHHHHc------------CCcEEEEccCCCHHHHHHHHHHhhc-CCccEEEEcCcccccCCCCCCCEEEEcCCCCC
Q 011065 371 ELLAKKITEL------------GYSCFYIHAKMLQDHRNRVFHDFRN-GACRNLVCTDLFTRGIDIQAVNVVINFDFPKN 437 (494)
Q Consensus 371 ~~l~~~L~~~------------~~~~~~~~~~~~~~~r~~i~~~f~~-g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s 437 (494)
+.+++.|.+. |.....+||+|++.+|..+++.|++ |..+|||||+++++|||+|++++||+||+|+|
T Consensus 645 e~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s 724 (936)
T 4a2w_A 645 SALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGN 724 (936)
T ss_dssp HHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEESCCSC
T ss_pred HHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCC
Confidence 9999999986 5556677999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHhccccCCCCcceEEEEecccch
Q 011065 438 SETYLHRVGRSGRFGHLGLAVNLITYEDR 466 (494)
Q Consensus 438 ~~~~~Qr~GRagR~g~~g~~~~l~~~~~~ 466 (494)
+.+|+||+|| ||. .+|.|+.|++..+.
T Consensus 725 ~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 725 VTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp SHHHHCC---------CCCEEEEESCHHH
T ss_pred HHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 9999999999 999 68999999987654
No 34
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.1e-41 Score=389.10 Aligned_cols=342 Identities=18% Similarity=0.187 Sum_probs=261.7
Q ss_pred cCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHH
Q 011065 125 YFLKRELLMGIFEKGFERPSPIQEESIPIALTG-SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQ 203 (494)
Q Consensus 125 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q 203 (494)
..|.+...++++..+|..++|+|.++++.++.+ ++++++||||||||++|.+|++..+.+..+ .++||++|+++|+.|
T Consensus 909 s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~-~kavyi~P~raLa~q 987 (1724)
T 4f92_B 909 SALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSE-GRCVYITPMEALAEQ 987 (1724)
T ss_dssp GGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTT-CCEEEECSCHHHHHH
T ss_pred ccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCC-CEEEEEcChHHHHHH
Confidence 346678889999989999999999999999865 569999999999999999999999876543 489999999999999
Q ss_pred HHHHHH-HHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcC--CccccccceEEecccccccCCCcH
Q 011065 204 TSQVCK-ELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG--VCILKDCSMLVMDEADKLLSPEFQ 280 (494)
Q Consensus 204 ~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~--~~~l~~~~~iViDEah~~~~~~~~ 280 (494)
..+.+. +++...+++++.++|+....... ...++|+|||||++..+++++ ...+.++++||+||+|.+.+ ..+
T Consensus 988 ~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~---~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d-~rg 1063 (1724)
T 4f92_B 988 VYMDWYEKFQDRLNKKVVLLTGETSTDLKL---LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG-ENG 1063 (1724)
T ss_dssp HHHHHHHHHTTTSCCCEEECCSCHHHHHHH---HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS-TTH
T ss_pred HHHHHHHHhchhcCCEEEEEECCCCcchhh---cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC-CCC
Confidence 988775 46667899999999986644322 245799999999998877764 33478999999999998876 467
Q ss_pred HHHHHHHHH-------CCCCCcEEEEEeecCcchHHHHHhhcCC-CeEEEecccccccceeEEEEeehhhh---H----H
Q 011065 281 PSVEQLIRF-------LPANRQILMFSATFPVTVKDFKDKYLQK-PYVINLMDELTLKGITQYYAFVEERQ---K----V 345 (494)
Q Consensus 281 ~~~~~~~~~-------~~~~~~~i~~SATl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---k----~ 345 (494)
..++.++.+ ++.+.|+|+||||++. ..++...+-.. .....+.....+..+..+....+... + .
T Consensus 1064 ~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~ 1142 (1724)
T 4f92_B 1064 PVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMA 1142 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTH
T ss_pred ccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhc
Confidence 766665543 4678999999999973 45554433222 23333333333333333332222111 1 1
Q ss_pred HHHHH-HHHhcCCCcEEEEecChhHHHHHHHHHHHc----------------------------------CCcEEEEccC
Q 011065 346 HCLNT-LFSKLQINQSIIFCNSVNRVELLAKKITEL----------------------------------GYSCFYIHAK 390 (494)
Q Consensus 346 ~~l~~-ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----------------------------------~~~~~~~~~~ 390 (494)
..+.. +......+++||||+++..|+.++..|... ...+..+|++
T Consensus 1143 ~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHag 1222 (1724)
T 4f92_B 1143 KPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEG 1222 (1724)
T ss_dssp HHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTT
T ss_pred chHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCC
Confidence 11222 233446679999999999999888766431 3458999999
Q ss_pred CCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEE----------cCCCCCHHHHHHHhccccCCCC--cceEE
Q 011065 391 MLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVIN----------FDFPKNSETYLHRVGRSGRFGH--LGLAV 458 (494)
Q Consensus 391 ~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~----------~~~p~s~~~~~Qr~GRagR~g~--~g~~~ 458 (494)
|++.+|..+++.|++|.++|||||+.+++|||+|+..+||. ...|.+..+|.||+|||||.|. .|.|+
T Consensus 1223 L~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~av 1302 (1724)
T 4f92_B 1223 LSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCV 1302 (1724)
T ss_dssp SCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEE
T ss_pred CCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEE
Confidence 99999999999999999999999999999999999999983 2346799999999999999986 69999
Q ss_pred EEecccchHHHHHH
Q 011065 459 NLITYEDRFNLYRI 472 (494)
Q Consensus 459 ~l~~~~~~~~~~~l 472 (494)
+++.+.+...+.++
T Consensus 1303 ll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1303 IMCQGSKKDFFKKF 1316 (1724)
T ss_dssp EEEEGGGHHHHHHH
T ss_pred EEecchHHHHHHHH
Confidence 99998877666554
No 35
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=6.3e-42 Score=356.34 Aligned_cols=319 Identities=19% Similarity=0.235 Sum_probs=227.4
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcE
Q 011065 139 GFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQ 218 (494)
Q Consensus 139 ~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~ 218 (494)
|. .|+++|..+++.++.|+ |+.++||||||++|.+|++..... +..++|+|||++||.|..+++..++..++++
T Consensus 72 g~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~---g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~ 145 (853)
T 2fsf_A 72 GM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT---GKGVHVVTVNDYLAQRDAENNRPLFEFLGLT 145 (853)
T ss_dssp SC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT---SSCCEEEESSHHHHHHHHHHHHHHHHHTTCC
T ss_pred CC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc---CCcEEEEcCCHHHHHHHHHHHHHHHHhcCCe
Confidence 54 89999999999999998 999999999999999999865433 3479999999999999999999999999999
Q ss_pred EEEEECCCChHHHHHHhcCCCeEEEEchHHH-HHhHhcC------CccccccceEEeccccccc-CC-------------
Q 011065 219 VMVTTGGTSLKDDIMRLYQPVHLLVGTPGRI-LDLSKKG------VCILKDCSMLVMDEADKLL-SP------------- 277 (494)
Q Consensus 219 ~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~------~~~l~~~~~iViDEah~~~-~~------------- 277 (494)
+++++|+.+.... ....+++|+|+||++| ++++... ...+.++.++|+||||+|+ +.
T Consensus 146 v~~i~GG~~~~~r--~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~ 223 (853)
T 2fsf_A 146 VGINLPGMPAPAK--REAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAED 223 (853)
T ss_dssp EEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC---
T ss_pred EEEEeCCCCHHHH--HHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCcc
Confidence 9999999876433 3334689999999999 6776643 2457889999999999988 43
Q ss_pred --CcHHHHHHHHHHCCC--------------------CCcEE------------------------EEEeecCcchHHHH
Q 011065 278 --EFQPSVEQLIRFLPA--------------------NRQIL------------------------MFSATFPVTVKDFK 311 (494)
Q Consensus 278 --~~~~~~~~~~~~~~~--------------------~~~~i------------------------~~SATl~~~~~~~~ 311 (494)
+|...+..++..++. ..+++ ++|||.+.....+.
T Consensus 224 ~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~ 303 (853)
T 2fsf_A 224 SSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVT 303 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHH
Confidence 245667777777753 34543 78999754222111
Q ss_pred -----Hhhc--------CCCeE-----------------------------EEec-cccccccee---------------
Q 011065 312 -----DKYL--------QKPYV-----------------------------INLM-DELTLKGIT--------------- 333 (494)
Q Consensus 312 -----~~~~--------~~~~~-----------------------------~~~~-~~~~~~~~~--------------- 333 (494)
..++ .++.+ +.+. ...+...++
T Consensus 304 ~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmT 383 (853)
T 2fsf_A 304 AALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMT 383 (853)
T ss_dssp -----------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEE
T ss_pred HHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCC
Confidence 0000 00000 0000 000000111
Q ss_pred --------------------------------EEEEeehhhhHHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHHH
Q 011065 334 --------------------------------QYYAFVEERQKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITE 379 (494)
Q Consensus 334 --------------------------------~~~~~~~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~ 379 (494)
..+.+.....|...+...+... ...++||||+|++.++.|++.|.+
T Consensus 384 GTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~ 463 (853)
T 2fsf_A 384 GTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTK 463 (853)
T ss_dssp CTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHH
Confidence 0123345667888888777542 456899999999999999999999
Q ss_pred cCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCC---------------------------------
Q 011065 380 LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAV--------------------------------- 426 (494)
Q Consensus 380 ~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v--------------------------------- 426 (494)
.|+.+..+||...+.++..+...|+.| .|+||||+|+||+||+..
T Consensus 464 ~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 541 (853)
T 2fsf_A 464 AGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVL 541 (853)
T ss_dssp TTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHH
Confidence 999999999999888888888899988 599999999999999974
Q ss_pred ----CEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchH
Q 011065 427 ----NVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRF 467 (494)
Q Consensus 427 ----~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~ 467 (494)
.+||+++.|.|...|.||+||+||.|.+|.++.|++..|..
T Consensus 542 ~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~l 586 (853)
T 2fsf_A 542 EAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDAL 586 (853)
T ss_dssp HTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSGG
T ss_pred hcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHHH
Confidence 59999999999999999999999999999999999977643
No 36
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=4.9e-43 Score=377.33 Aligned_cols=318 Identities=21% Similarity=0.276 Sum_probs=222.2
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCC---CceEEEEEcCcHHHHHHH-HHHHHHHhccCCc
Q 011065 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN---NVIQVVILVPTRELALQT-SQVCKELGKHLNI 217 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~---~~~~~lil~P~~~la~q~-~~~~~~~~~~~~~ 217 (494)
.|+++|.++++.++.++++++.+|||+|||++|++|++..+.... .+.++|||+|+++|+.|+ .+.++++... ++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~ 85 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WY 85 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TS
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-Cc
Confidence 799999999999999999999999999999999999998876532 224799999999999999 9999998765 47
Q ss_pred EEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhH------hcCCccccccceEEecccccccCCC-cHHHHHHHHHH-
Q 011065 218 QVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLS------KKGVCILKDCSMLVMDEADKLLSPE-FQPSVEQLIRF- 289 (494)
Q Consensus 218 ~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~------~~~~~~l~~~~~iViDEah~~~~~~-~~~~~~~~~~~- 289 (494)
.+..++|+.........+....+|+|+||++|.+.+ ......+.++++|||||||++.... +...+..++..
T Consensus 86 ~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~ 165 (699)
T 4gl2_A 86 RVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQK 165 (699)
T ss_dssp CEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHH
T ss_pred eEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHhh
Confidence 888888887765544444567899999999999877 3444568899999999999876533 33333323221
Q ss_pred ---C---------CCCCcEEEEEeecCcc-----------hHHHHHh------------------hcCCCeEEEeccccc
Q 011065 290 ---L---------PANRQILMFSATFPVT-----------VKDFKDK------------------YLQKPYVINLMDELT 328 (494)
Q Consensus 290 ---~---------~~~~~~i~~SATl~~~-----------~~~~~~~------------------~~~~~~~~~~~~~~~ 328 (494)
. .+..++|+||||+... +..+... +...|..........
T Consensus 166 ~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~ 245 (699)
T 4gl2_A 166 LKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADAT 245 (699)
T ss_dssp HHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC--
T ss_pred hcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcccc
Confidence 1 1567899999998752 1111111 111121111000000
Q ss_pred cc------------------ce---eEEE---------------------------------------------------
Q 011065 329 LK------------------GI---TQYY--------------------------------------------------- 336 (494)
Q Consensus 329 ~~------------------~~---~~~~--------------------------------------------------- 336 (494)
.. .+ ..+-
T Consensus 246 ~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 325 (699)
T 4gl2_A 246 REDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTH 325 (699)
T ss_dssp ---CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00 0000
Q ss_pred ------------------------Eeeh-------------------------hhhHHHHHHHHH----HhcC-CCcEEE
Q 011065 337 ------------------------AFVE-------------------------ERQKVHCLNTLF----SKLQ-INQSII 362 (494)
Q Consensus 337 ------------------------~~~~-------------------------~~~k~~~l~~ll----~~~~-~~~~lV 362 (494)
.... ...|...|..++ ...+ .+++||
T Consensus 326 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IV 405 (699)
T 4gl2_A 326 LETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGII 405 (699)
T ss_dssp HHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEE
T ss_pred HHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 0000 001111122222 2223 689999
Q ss_pred EecChhHHHHHHHHHHHc------CCcEEEEccC--------CCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCE
Q 011065 363 FCNSVNRVELLAKKITEL------GYSCFYIHAK--------MLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNV 428 (494)
Q Consensus 363 F~~~~~~~~~l~~~L~~~------~~~~~~~~~~--------~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~ 428 (494)
||+++..++.+++.|.+. |+.+..+||+ |++.+|..+++.|++|..+|||||+++++|||+|++++
T Consensus 406 F~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~ 485 (699)
T 4gl2_A 406 FTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNI 485 (699)
T ss_dssp ECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCC
T ss_pred EECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCE
Confidence 999999999999999987 8999999999 99999999999999999999999999999999999999
Q ss_pred EEEcCCCCCHHHHHHHhccccCCCCcceEEEEecc
Q 011065 429 VINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITY 463 (494)
Q Consensus 429 VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~ 463 (494)
||+||+|+|+.+|+||+|||||.| .++.|+..
T Consensus 486 VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~ 517 (699)
T 4gl2_A 486 VIRYGLVTNEIAMVQARGRARADE---STYVLVAH 517 (699)
T ss_dssp CEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEE
T ss_pred EEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEe
Confidence 999999999999999999987665 44555543
No 37
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=3.6e-42 Score=368.78 Aligned_cols=335 Identities=18% Similarity=0.229 Sum_probs=249.0
Q ss_pred CCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc
Q 011065 117 TKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTG-SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (494)
Q Consensus 117 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (494)
.....|.++++++.+.+.+...+ ..|.+.|.++|+.++.+ ++++++||||||||++..+.++......+.+.+++|++
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~ 147 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQ 147 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEE
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecC
Confidence 34457999999999999999887 68889999999887755 56999999999999954433333322222245799999
Q ss_pred CcHHHHHHHHHHHHH-HhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEeccccc-
Q 011065 196 PTRELALQTSQVCKE-LGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADK- 273 (494)
Q Consensus 196 P~~~la~q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~- 273 (494)
|+++|+.|+.+.+.. +....+..++....... .....++|+|+|||++.+.+... ..+.++++|||||+|.
T Consensus 148 P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~R 220 (773)
T 2xau_A 148 PRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHER 220 (773)
T ss_dssp SCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGGC
T ss_pred chHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCcccc
Confidence 999999998765433 33333333433222111 11246789999999999876654 3488999999999995
Q ss_pred ccCCCc-HHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeehhhhH----HHHH
Q 011065 274 LLSPEF-QPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQK----VHCL 348 (494)
Q Consensus 274 ~~~~~~-~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k----~~~l 348 (494)
.++.++ ...+..+.... ++.++|+||||++ ...+. .++....++.+.... ..+..++........ ...+
T Consensus 221 ~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~--~~~l~-~~~~~~~vi~v~gr~--~pv~~~~~~~~~~~~~~~~l~~l 294 (773)
T 2xau_A 221 TLATDILMGLLKQVVKRR-PDLKIIIMSATLD--AEKFQ-RYFNDAPLLAVPGRT--YPVELYYTPEFQRDYLDSAIRTV 294 (773)
T ss_dssp CHHHHHHHHHHHHHHHHC-TTCEEEEEESCSC--CHHHH-HHTTSCCEEECCCCC--CCEEEECCSSCCSCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhC-CCceEEEEecccc--HHHHH-HHhcCCCcccccCcc--cceEEEEecCCchhHHHHHHHHH
Confidence 544332 34444555444 5789999999996 34444 455554455444332 123333333332222 3334
Q ss_pred HHHHHhcCCCcEEEEecChhHHHHHHHHHHH-----------cCCcEEEEccCCCHHHHHHHHHHhh-----cCCccEEE
Q 011065 349 NTLFSKLQINQSIIFCNSVNRVELLAKKITE-----------LGYSCFYIHAKMLQDHRNRVFHDFR-----NGACRNLV 412 (494)
Q Consensus 349 ~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~-----------~~~~~~~~~~~~~~~~r~~i~~~f~-----~g~~~vlv 412 (494)
..++.....+++||||+++++++.+++.|.+ .++.+.++||+|++++|..+++.|+ +|.++|||
T Consensus 295 ~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlV 374 (773)
T 2xau_A 295 LQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVI 374 (773)
T ss_dssp HHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEE
T ss_pred HHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEE
Confidence 4444455688999999999999999999985 4778999999999999999999999 99999999
Q ss_pred EcCcccccCCCCCCCEEEEcCC------------------CCCHHHHHHHhccccCCCCcceEEEEecccch
Q 011065 413 CTDLFTRGIDIQAVNVVINFDF------------------PKNSETYLHRVGRSGRFGHLGLAVNLITYEDR 466 (494)
Q Consensus 413 aT~~~~~Gidi~~v~~VI~~~~------------------p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~ 466 (494)
||+++++|||||++++||++++ |.|.++|+||+|||||. .+|.||+||++.+.
T Consensus 375 AT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 375 STNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp ECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred eCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 9999999999999999999888 89999999999999999 79999999987654
No 38
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=9e-43 Score=364.57 Aligned_cols=323 Identities=14% Similarity=0.105 Sum_probs=239.3
Q ss_pred cCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHH
Q 011065 125 YFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQT 204 (494)
Q Consensus 125 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~ 204 (494)
+.+++.+++.+... ...++|+|..+++.++++++++++++||||||++|++|+++.+... +.++||++||++|+.|+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~--~~~vLvl~PtreLa~Qi 231 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR--RLRTLILAPTRVVAAEM 231 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEcChHHHHHHH
Confidence 33455554444432 4678889888899999999999999999999999999999887653 35899999999999998
Q ss_pred HHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHH
Q 011065 205 SQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVE 284 (494)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~ 284 (494)
.+.+. +..+.. .+... . .....+..+.++|.+.+.+.+... ..+.++++|||||||++ +.+|...+.
T Consensus 232 ~~~l~------~~~v~~-~~~~l-~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~ 298 (618)
T 2whx_A 232 EEALR------GLPIRY-QTPAV-K---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARG 298 (618)
T ss_dssp HHHTT------TSCEEE-CCTTS-S---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHHHHH
T ss_pred HHHhc------CCceeE-ecccc-e---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHHHHH
Confidence 87765 233332 11110 0 011234568889999888766554 34889999999999998 656777777
Q ss_pred HHHHHCC-CCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeehhhhHHHHHHHHHHhcCCCcEEEE
Q 011065 285 QLIRFLP-ANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIF 363 (494)
Q Consensus 285 ~~~~~~~-~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF 363 (494)
.++..++ .+.|+|+||||++..+..+.. .++..+.+........ . ..+...+.. ..+++|||
T Consensus 299 ~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~~~~~------------~-~~ll~~l~~-~~~~~LVF 361 (618)
T 2whx_A 299 YISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREIPERS------------W-NTGFDWITD-YQGKTVWF 361 (618)
T ss_dssp HHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCCCSSC------------C-SSSCHHHHH-CCSCEEEE
T ss_pred HHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccCCHHH------------H-HHHHHHHHh-CCCCEEEE
Confidence 7776664 679999999999877554322 2333333322211100 0 111122222 36799999
Q ss_pred ecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEE--------------
Q 011065 364 CNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVV-------------- 429 (494)
Q Consensus 364 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~V-------------- 429 (494)
|++++.++.+++.|.+.++.+..+||. +|.++++.|++|+.+|||||+++++|||+| +++|
T Consensus 362 ~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~ 436 (618)
T 2whx_A 362 VPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTD 436 (618)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECS
T ss_pred ECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceeccc
Confidence 999999999999999999999999984 688899999999999999999999999997 9988
Q ss_pred ------EEcCCCCCHHHHHHHhccccCCCC-cceEEEEec---ccchHHHHHHHHHhCCCCccCCc
Q 011065 430 ------INFDFPKNSETYLHRVGRSGRFGH-LGLAVNLIT---YEDRFNLYRIEQELGTEIKQIPP 485 (494)
Q Consensus 430 ------I~~~~p~s~~~~~Qr~GRagR~g~-~g~~~~l~~---~~~~~~~~~l~~~~~~~~~~~~~ 485 (494)
|+++.|.+.++|+||+||+||.|. +|.|++|++ +.|...+..++..+.....++|.
T Consensus 437 ~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~ 502 (618)
T 2whx_A 437 GPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPE 502 (618)
T ss_dssp SSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTT
T ss_pred CCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCCc
Confidence 667779999999999999999965 899999998 77888888888876444444444
No 39
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=6.3e-42 Score=364.44 Aligned_cols=324 Identities=18% Similarity=0.208 Sum_probs=238.6
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHhcC------CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHH
Q 011065 131 LLMGIFEKGFERPSPIQEESIPIALTG------SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQT 204 (494)
Q Consensus 131 l~~~l~~~~~~~~~~~Q~~~i~~~~~~------~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~ 204 (494)
+.+.+...+| .|+++|.++++.++++ ++++++|+||||||++|++|++..+..+ .+++|++||++|+.|+
T Consensus 358 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g---~qvlvlaPtr~La~Q~ 433 (780)
T 1gm5_A 358 AEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG---FQTAFMVPTSILAIQH 433 (780)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT---SCEEEECSCHHHHHHH
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHHHH
Confidence 3444567889 9999999999999875 5899999999999999999999887653 4899999999999999
Q ss_pred HHHHHHHhccCCcEEEEEECCCChHHHH---HHhc-CCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcH
Q 011065 205 SQVCKELGKHLNIQVMVTTGGTSLKDDI---MRLY-QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQ 280 (494)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~-~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~ 280 (494)
.+.+.++....++++..++|+....+.. ..+. ..++|+|+||+.+.+ ...+.++++||+||+|++....
T Consensus 434 ~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~q-- 506 (780)
T 1gm5_A 434 YRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVKQ-- 506 (780)
T ss_dssp HHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC------
T ss_pred HHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHHH--
Confidence 9999999988899999999998765532 2233 358999999997754 2457899999999999863211
Q ss_pred HHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEeccccc-ccceeEEEEeehhhhHHHHHHHHHHhc-CCC
Q 011065 281 PSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELT-LKGITQYYAFVEERQKVHCLNTLFSKL-QIN 358 (494)
Q Consensus 281 ~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~~l~~ll~~~-~~~ 358 (494)
...+.....+.++++||||+.+...... +..+.....+..... ...+... ..........+..+.... ..+
T Consensus 507 ---r~~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p~~r~~i~~~--~~~~~~~~~l~~~i~~~l~~g~ 579 (780)
T 1gm5_A 507 ---REALMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMPPGRKEVQTM--LVPMDRVNEVYEFVRQEVMRGG 579 (780)
T ss_dssp ----CCCCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCCSSCCCCEEC--CCCSSTHHHHHHHHHHHTTTSC
T ss_pred ---HHHHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccCCCCcceEEE--EeccchHHHHHHHHHHHHhcCC
Confidence 1122223356899999999865544433 233222111111000 1111111 122222222223333332 456
Q ss_pred cEEEEecChh--------HHHHHHHHHHH---cCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCC
Q 011065 359 QSIIFCNSVN--------RVELLAKKITE---LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVN 427 (494)
Q Consensus 359 ~~lVF~~~~~--------~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~ 427 (494)
+++|||+..+ .++.+++.|.+ .++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 580 qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~ 659 (780)
T 1gm5_A 580 QAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRAN 659 (780)
T ss_dssp CBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCC
T ss_pred cEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCC
Confidence 8999999764 46778888877 367899999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCC-CHHHHHHHhccccCCCCcceEEEEecccchHHHHHH
Q 011065 428 VVINFDFPK-NSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRI 472 (494)
Q Consensus 428 ~VI~~~~p~-s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l 472 (494)
+||+++.|. +.+.|.||+||+||.|++|.|++++++.+.....++
T Consensus 660 ~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~~rl 705 (780)
T 1gm5_A 660 VMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERL 705 (780)
T ss_dssp EEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHHHHH
Confidence 999999985 788999999999999999999999985443333333
No 40
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1e-40 Score=347.56 Aligned_cols=320 Identities=20% Similarity=0.218 Sum_probs=251.6
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011065 138 KGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI 217 (494)
Q Consensus 138 ~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (494)
.|+ .|+++|..+++.++.|+ |+.++||+|||++|.+|++..... +..++||+||+.||.|..+++..+...+++
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~---g~~v~VvTpTreLA~Qdae~m~~l~~~lGL 181 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA---GNGVHIVTVNDYLAKRDSEWMGRVHRFLGL 181 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT---TSCEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh---CCCeEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 578 99999999999999998 999999999999999999754333 237999999999999999999999999999
Q ss_pred EEEEEECCCChHHHHHHhcCCCeEEEEchHHH-HHhHhcC------CccccccceEEecccccccCC-------------
Q 011065 218 QVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRI-LDLSKKG------VCILKDCSMLVMDEADKLLSP------------- 277 (494)
Q Consensus 218 ~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~------~~~l~~~~~iViDEah~~~~~------------- 277 (494)
++++++|+.+...... ...++|+|+||+.| ++++... ...+..+.++||||||+|+.+
T Consensus 182 sv~~i~gg~~~~~r~~--~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~ 259 (922)
T 1nkt_A 182 QVGVILATMTPDERRV--AYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPAD 259 (922)
T ss_dssp CEEECCTTCCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECC
T ss_pred eEEEEeCCCCHHHHHH--hcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCC
Confidence 9999999987543332 24689999999999 6666543 345788999999999998732
Q ss_pred ---CcHHHHHHHHHHCC---------CCCcEE-----------------EEEeecCcchHHHHH-----hhcC-C-----
Q 011065 278 ---EFQPSVEQLIRFLP---------ANRQIL-----------------MFSATFPVTVKDFKD-----KYLQ-K----- 317 (494)
Q Consensus 278 ---~~~~~~~~~~~~~~---------~~~~~i-----------------~~SATl~~~~~~~~~-----~~~~-~----- 317 (494)
+|...+..++..++ +..+++ ++|||++.....+.. .++. +
T Consensus 260 ~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV 339 (922)
T 1nkt_A 260 GASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIV 339 (922)
T ss_dssp CCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEE
T ss_pred cchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceee
Confidence 47788899999997 678888 889998753333211 1111 1
Q ss_pred --CeEEEecc-----------------------cc-------ccccee--------------------------------
Q 011065 318 --PYVINLMD-----------------------EL-------TLKGIT-------------------------------- 333 (494)
Q Consensus 318 --~~~~~~~~-----------------------~~-------~~~~~~-------------------------------- 333 (494)
..++.+.. .. +...++
T Consensus 340 ~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~ 419 (922)
T 1nkt_A 340 RDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLG 419 (922)
T ss_dssp CSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCE
T ss_pred ecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCC
Confidence 11111110 00 000000
Q ss_pred ---------------EEEEeehhhhHHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHH
Q 011065 334 ---------------QYYAFVEERQKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHR 396 (494)
Q Consensus 334 ---------------~~~~~~~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r 396 (494)
..+.+.....|...+...+... ...++||||+|++.++.|++.|.+.|+.+..+|+...+.++
T Consensus 420 vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa 499 (922)
T 1nkt_A 420 VVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEA 499 (922)
T ss_dssp EEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHH
T ss_pred eEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHH
Confidence 0123344566777777766542 45689999999999999999999999999999999887777
Q ss_pred HHHHHHhhcCCccEEEEcCcccccCCCCCC--------------------------------------------------
Q 011065 397 NRVFHDFRNGACRNLVCTDLFTRGIDIQAV-------------------------------------------------- 426 (494)
Q Consensus 397 ~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v-------------------------------------------------- 426 (494)
..+...|+.| .|+||||+++||+||+.+
T Consensus 500 ~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 577 (922)
T 1nkt_A 500 TIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEA 577 (922)
T ss_dssp HHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHT
T ss_pred HHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhc
Confidence 7787888887 699999999999999975
Q ss_pred --CEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchH
Q 011065 427 --NVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRF 467 (494)
Q Consensus 427 --~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~ 467 (494)
.+||+++.|.|...|+||+||+||.|.+|.+..|++..|..
T Consensus 578 GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l 620 (922)
T 1nkt_A 578 GGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDEL 620 (922)
T ss_dssp TSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHH
T ss_pred CCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHH
Confidence 49999999999999999999999999999999999977653
No 41
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=4.1e-40 Score=366.46 Aligned_cols=323 Identities=22% Similarity=0.253 Sum_probs=251.8
Q ss_pred cCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhc----CC--cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCc
Q 011065 125 YFLKRELLMGIFE-KGFERPSPIQEESIPIALT----GS--DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPT 197 (494)
Q Consensus 125 ~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~----~~--~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~ 197 (494)
+..+....+.+.+ .+| .++|+|.++++.++. ++ +++++++||+|||++++.+++..+.. +.+++|+|||
T Consensus 586 ~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---g~~vlvlvPt 661 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---HKQVAVLVPT 661 (1151)
T ss_dssp CCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---TCEEEEECSS
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---CCeEEEEech
Confidence 3456666666644 466 469999999999986 65 89999999999999999888876653 3489999999
Q ss_pred HHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHH---HHhc-CCCeEEEEchHHHHHhHhcCCccccccceEEeccccc
Q 011065 198 RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDI---MRLY-QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADK 273 (494)
Q Consensus 198 ~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~-~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~ 273 (494)
++|+.|+.+.+.++....++.+..+++.....+.. ..+. ..++|+|+||+.+.. ...+.++++||+||+|+
T Consensus 662 ~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~-----~~~~~~l~lvIiDEaH~ 736 (1151)
T 2eyq_A 662 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS-----DVKFKDLGLLIVDEEHR 736 (1151)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHS-----CCCCSSEEEEEEESGGG
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhC-----CccccccceEEEechHh
Confidence 99999999999988877788898888876654432 2233 358999999986632 34578999999999999
Q ss_pred ccCCCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeehhhhHHHHHHHHHH
Q 011065 274 LLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFS 353 (494)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~ 353 (494)
+ .......+..++.+.++++||||+++.........+.++..+..... ....+..+...... ......++.
T Consensus 737 ~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~-~r~~i~~~~~~~~~---~~i~~~il~ 807 (1151)
T 2eyq_A 737 F-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA-RRLAVKTFVREYDS---MVVREAILR 807 (1151)
T ss_dssp S-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCC-BCBCEEEEEEECCH---HHHHHHHHH
T ss_pred c-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCC-CccccEEEEecCCH---HHHHHHHHH
Confidence 4 33445666666678899999999887776666655544433322111 11223333222222 222233333
Q ss_pred hc-CCCcEEEEecChhHHHHHHHHHHHc--CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEE
Q 011065 354 KL-QINQSIIFCNSVNRVELLAKKITEL--GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVI 430 (494)
Q Consensus 354 ~~-~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI 430 (494)
.. ..++++|||++++.++.+++.|.+. ++.+..+||+|++.+|..+++.|.+|+.+|||||+++++|||+|++++||
T Consensus 808 ~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VI 887 (1151)
T 2eyq_A 808 EILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 887 (1151)
T ss_dssp HHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEE
T ss_pred HHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEE
Confidence 32 5679999999999999999999988 78999999999999999999999999999999999999999999999999
Q ss_pred EcCC-CCCHHHHHHHhccccCCCCcceEEEEecccc
Q 011065 431 NFDF-PKNSETYLHRVGRSGRFGHLGLAVNLITYED 465 (494)
Q Consensus 431 ~~~~-p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~ 465 (494)
+++. +.+..+|.||+||+||.|+.|.||+++++.+
T Consensus 888 i~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 888 IERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp ETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred EeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 9988 5799999999999999999999999998653
No 42
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=8.4e-42 Score=347.06 Aligned_cols=287 Identities=15% Similarity=0.144 Sum_probs=216.1
Q ss_pred CCCCCcHHHHHHHHHHhcCCcE-EEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011065 139 GFERPSPIQEESIPIALTGSDI-LARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI 217 (494)
Q Consensus 139 ~~~~~~~~Q~~~i~~~~~~~~~-ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (494)
|+.+++|+|+ +||.+++++++ ++++|||||||++|++|++..+... +.++||++||++|+.|+.+.+. +.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~------g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR--RLRTLILAPTRVVAAEMEEALR------GL 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT------TS
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc--CCcEEEECCCHHHHHHHHHHhc------Cc
Confidence 6788999985 79999999886 9999999999999999999876653 3589999999999999988764 33
Q ss_pred EEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHH-HCCCCCcE
Q 011065 218 QVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIR-FLPANRQI 296 (494)
Q Consensus 218 ~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~-~~~~~~~~ 296 (494)
.+......... .......|.++|++.+.+.+... ..+.++++|||||||++ +..+...+..+.. ..+++.++
T Consensus 72 ~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~ 144 (451)
T 2jlq_A 72 PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAA 144 (451)
T ss_dssp CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEE
T ss_pred eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceE
Confidence 33322221111 12245679999999998877654 44889999999999976 3333333322322 23457999
Q ss_pred EEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeehhhhHHHHHHHHHHhcCCCcEEEEecChhHHHHHHHH
Q 011065 297 LMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKK 376 (494)
Q Consensus 297 i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~ 376 (494)
++||||++.....+ +..++.++......+... + ... ...+.. ..+++||||++++.++.+++.
T Consensus 145 i~~SAT~~~~~~~~---~~~~~~~~~~~~~~p~~~---~------~~~----~~~l~~-~~~~~lVF~~s~~~a~~l~~~ 207 (451)
T 2jlq_A 145 IFMTATPPGSTDPF---PQSNSPIEDIEREIPERS---W------NTG----FDWITD-YQGKTVWFVPSIKAGNDIANC 207 (451)
T ss_dssp EEECSSCTTCCCSS---CCCSSCEEEEECCCCSSC---C------SSS----CHHHHH-CCSCEEEECSSHHHHHHHHHH
T ss_pred EEEccCCCccchhh---hcCCCceEecCccCCchh---h------HHH----HHHHHh-CCCCEEEEcCCHHHHHHHHHH
Confidence 99999998755443 233343333321111100 0 001 112222 357999999999999999999
Q ss_pred HHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcC--------------------CCC
Q 011065 377 ITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFD--------------------FPK 436 (494)
Q Consensus 377 L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~--------------------~p~ 436 (494)
|.+.++.+..+|+.+. ..+++.|++|+.+|||||+++++|||+|+ ++||+++ .|.
T Consensus 208 L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~ 282 (451)
T 2jlq_A 208 LRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPV 282 (451)
T ss_dssp HHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEEC
T ss_pred HHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccC
Confidence 9999999999999754 57899999999999999999999999999 9999998 999
Q ss_pred CHHHHHHHhccccCCCC-cceEEEEecc
Q 011065 437 NSETYLHRVGRSGRFGH-LGLAVNLITY 463 (494)
Q Consensus 437 s~~~~~Qr~GRagR~g~-~g~~~~l~~~ 463 (494)
|.++|+||+|||||.|. +|.|++|+..
T Consensus 283 s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 283 TPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp CHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred CHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999998 8999988754
No 43
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.3e-40 Score=376.98 Aligned_cols=328 Identities=21% Similarity=0.301 Sum_probs=251.9
Q ss_pred CCCCCcHHHHHHHHHHhc-CCcEEEEccCCCchhHHhHHHHHHhhhcC--------CCceEEEEEcCcHHHHHHHHHHHH
Q 011065 139 GFERPSPIQEESIPIALT-GSDILARAKNGTGKTAAFCIPALEKIDQD--------NNVIQVVILVPTRELALQTSQVCK 209 (494)
Q Consensus 139 ~~~~~~~~Q~~~i~~~~~-~~~~ii~~~TGsGKT~~~~~~~l~~l~~~--------~~~~~~lil~P~~~la~q~~~~~~ 209 (494)
||+.++++|.++++.++. +++++++||||||||+++.++++..+.+. ..+.++||++|+++|+.|+.+.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 689999999999998875 67899999999999999999999988642 235689999999999999999999
Q ss_pred HHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCC--ccccccceEEecccccccCCCcHHHHHHHH
Q 011065 210 ELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGV--CILKDCSMLVMDEADKLLSPEFQPSVEQLI 287 (494)
Q Consensus 210 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~--~~l~~~~~iViDEah~~~~~~~~~~~~~~~ 287 (494)
+.....|+.|..++|+...... ....++|+|||||++..++.++. ..+.++++||+||+|.+.+ +.+..++.++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 8888899999999999875432 12468999999999877766543 2478899999999997765 6777776665
Q ss_pred H-------HCCCCCcEEEEEeecCcchHHHHHhhcCC-C--eEEEecccccccceeEEEEeehhhh---HHHHH----HH
Q 011065 288 R-------FLPANRQILMFSATFPVTVKDFKDKYLQK-P--YVINLMDELTLKGITQYYAFVEERQ---KVHCL----NT 350 (494)
Q Consensus 288 ~-------~~~~~~~~i~~SATl~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~---k~~~l----~~ 350 (494)
. .++.+.|+|+||||+|. ..++.. |+.. + ....+.....+..+.+.+....... ....+ ..
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~-wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPN-YEDVAT-FLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYE 309 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTT-HHHHHH-HTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCC-HHHHHH-HhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHH
Confidence 4 34678999999999973 444443 4432 1 1222222332233433332222211 11222 22
Q ss_pred HH-HhcCCCcEEEEecChhHHHHHHHHHHHc-------------------------------------CCcEEEEccCCC
Q 011065 351 LF-SKLQINQSIIFCNSVNRVELLAKKITEL-------------------------------------GYSCFYIHAKML 392 (494)
Q Consensus 351 ll-~~~~~~~~lVF~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~~~~~ 392 (494)
.+ .....+++||||++++.|+.+++.|.+. ...+..+||+|+
T Consensus 310 ~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~ 389 (1724)
T 4f92_B 310 KIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMT 389 (1724)
T ss_dssp HHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSC
T ss_pred HHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCC
Confidence 22 2234578999999999999998887641 235889999999
Q ss_pred HHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEE----cC------CCCCHHHHHHHhccccCCCC--cceEEEE
Q 011065 393 QDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVIN----FD------FPKNSETYLHRVGRSGRFGH--LGLAVNL 460 (494)
Q Consensus 393 ~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~----~~------~p~s~~~~~Qr~GRagR~g~--~g~~~~l 460 (494)
+++|..+++.|++|.++|||||+.++.|||+|++++||. |+ .|.+..+|.||+|||||.|. .|.++++
T Consensus 390 ~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~ 469 (1724)
T 4f92_B 390 RVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILI 469 (1724)
T ss_dssp THHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEE
Confidence 999999999999999999999999999999999999985 33 35799999999999999764 6999999
Q ss_pred ecccchHHHHHH
Q 011065 461 ITYEDRFNLYRI 472 (494)
Q Consensus 461 ~~~~~~~~~~~l 472 (494)
.++.+...+..+
T Consensus 470 ~~~~~~~~~~~l 481 (1724)
T 4f92_B 470 TSHGELQYYLSL 481 (1724)
T ss_dssp EESTTCCHHHHH
T ss_pred ecchhHHHHHHH
Confidence 998877666655
No 44
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=2.8e-41 Score=350.27 Aligned_cols=308 Identities=16% Similarity=0.155 Sum_probs=236.1
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEE
Q 011065 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~ 221 (494)
.|+++|.++++.++.+++++++++||+|||++++.++...+.... .++|||||+++|+.|+.+.+.++....+..+..
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~--~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~ 190 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE--GKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCS--SEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEE
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCC--CeEEEEECcHHHHHHHHHHHHHhhcCCccceEE
Confidence 799999999999999999999999999999999998888775432 389999999999999999999887666677888
Q ss_pred EECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEe
Q 011065 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSA 301 (494)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 301 (494)
+.++.....+ .....+|+|+|++.+.. .....+.++++||+||||++.. ..+..++..++...++++|||
T Consensus 191 ~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l~lSA 260 (510)
T 2oca_A 191 IGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSG 260 (510)
T ss_dssp CGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEEEEES
T ss_pred EecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEEEEEe
Confidence 8887765543 44678999999997654 2334578899999999999754 567777788878889999999
Q ss_pred ecCcchHHHHH-hhcCCCeEEEeccc-------ccccceeEEEEe---------------------ehhhhHHHHHHHHH
Q 011065 302 TFPVTVKDFKD-KYLQKPYVINLMDE-------LTLKGITQYYAF---------------------VEERQKVHCLNTLF 352 (494)
Q Consensus 302 Tl~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~---------------------~~~~~k~~~l~~ll 352 (494)
|++........ ..+..+..+.+... .....+...... .....+...+..++
T Consensus 261 Tp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 340 (510)
T 2oca_A 261 SLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLA 340 (510)
T ss_dssp CGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHH
Confidence 98765433221 11112222211110 000000000000 00112334455555
Q ss_pred Hhc---CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEc-CcccccCCCCCCCE
Q 011065 353 SKL---QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT-DLFTRGIDIQAVNV 428 (494)
Q Consensus 353 ~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT-~~~~~Gidi~~v~~ 428 (494)
... ...++||||+ .+.++.+++.|.+.+..+..+||+++..+|..+++.|.+|+.+||||| +++++|+|+|++++
T Consensus 341 ~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~ 419 (510)
T 2oca_A 341 IKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHH 419 (510)
T ss_dssp HHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEE
T ss_pred HHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcE
Confidence 443 3345566666 899999999999988899999999999999999999999999999999 99999999999999
Q ss_pred EEEcCCCCCHHHHHHHhccccCCCCcceEEEEec
Q 011065 429 VINFDFPKNSETYLHRVGRSGRFGHLGLAVNLIT 462 (494)
Q Consensus 429 VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~ 462 (494)
||+++.|.+...|.|++||+||.|+.+.++.+|+
T Consensus 420 vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 420 VVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp EEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred EEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999999999998776667766
No 45
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=2.7e-41 Score=350.00 Aligned_cols=293 Identities=17% Similarity=0.226 Sum_probs=222.4
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEE
Q 011065 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~ 221 (494)
.++++|.++++.+..+++++++|+||||||++|.+++++. +.++||++|||+||.|+.+.+.+. ++..+..
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------g~~vLVl~PTReLA~Qia~~l~~~---~g~~vg~ 287 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------GYKVLVLNPSVAATLGFGAYMSKA---HGIDPNI 287 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------TCCEEEEESCHHHHHHHHHHHHHH---HSCCCEE
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------CCeEEEEcchHHHHHHHHHHHHHH---hCCCeeE
Confidence 5567777777888888899999999999999999998863 347999999999999998765543 3455666
Q ss_pred EECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCc--EEEE
Q 011065 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQ--ILMF 299 (494)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~--~i~~ 299 (494)
.+|+.. ....++|+|+||++|+ ......+.++++|||||||++ +.+|...+..++..++...+ +++|
T Consensus 288 ~vG~~~-------~~~~~~IlV~TPGrLl---~~~~l~l~~l~~lVlDEAH~l-~~~~~~~l~~Il~~l~~~~~~llil~ 356 (666)
T 3o8b_A 288 RTGVRT-------ITTGAPVTYSTYGKFL---ADGGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAETAGARLVVLA 356 (666)
T ss_dssp ECSSCE-------ECCCCSEEEEEHHHHH---HTTSCCTTSCSEEEETTTTCC-SHHHHHHHHHHHHHTTTTTCSEEEEE
T ss_pred EECcEe-------ccCCCCEEEECcHHHH---hCCCcccCcccEEEEccchhc-CccHHHHHHHHHHhhhhcCCceEEEE
Confidence 777754 3467899999999983 455566888999999999854 66778888889998887666 7888
Q ss_pred EeecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeehhhhHHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHH
Q 011065 300 SATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITE 379 (494)
Q Consensus 300 SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~ 379 (494)
|||++..+. ...+....+.... .....+ ...... +.....+++||||++++.++.+++.|.+
T Consensus 357 SAT~~~~i~------~~~p~i~~v~~~~--~~~i~~---~~~~~~-------l~~~~~~~vLVFv~Tr~~ae~la~~L~~ 418 (666)
T 3o8b_A 357 TATPPGSVT------VPHPNIEEVALSN--TGEIPF---YGKAIP-------IEAIRGGRHLIFCHSKKKCDELAAKLSG 418 (666)
T ss_dssp ESSCTTCCC------CCCTTEEEEECBS--CSSEEE---TTEEEC-------GGGSSSSEEEEECSCHHHHHHHHHHHHT
T ss_pred CCCCCcccc------cCCcceEEEeecc--cchhHH---HHhhhh-------hhhccCCcEEEEeCCHHHHHHHHHHHHh
Confidence 999986422 1222222211110 010000 000000 1233678999999999999999999999
Q ss_pred cCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEE----------EcC-----------CCCCH
Q 011065 380 LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVI----------NFD-----------FPKNS 438 (494)
Q Consensus 380 ~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI----------~~~-----------~p~s~ 438 (494)
.++.+..+||++++++ |.++..+|||||+++++|||++ +++|| ||| .|.+.
T Consensus 419 ~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~ 490 (666)
T 3o8b_A 419 LGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDA 490 (666)
T ss_dssp TTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBH
T ss_pred CCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCH
Confidence 9999999999999874 5567779999999999999997 99998 566 89999
Q ss_pred HHHHHHhccccCCCCcceEEEEecccchHH--H--HHHHHHhCCCCcc
Q 011065 439 ETYLHRVGRSGRFGHLGLAVNLITYEDRFN--L--YRIEQELGTEIKQ 482 (494)
Q Consensus 439 ~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~--~--~~l~~~~~~~~~~ 482 (494)
++|+||+||+|| |.+|. |.|+++.+... + ..+++..+..++.
T Consensus 491 ~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~~~~~ 536 (666)
T 3o8b_A 491 VSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDAGCAW 536 (666)
T ss_dssp HHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcCCccc
Confidence 999999999999 88999 99999876544 3 5566655554443
No 46
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=2.8e-42 Score=349.04 Aligned_cols=298 Identities=15% Similarity=0.163 Sum_probs=202.8
Q ss_pred HHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHH
Q 011065 153 IALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDI 232 (494)
Q Consensus 153 ~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 232 (494)
++++++++++++|||||||++|++|+++.+... +.+++|++||++|+.|+.+.+..+ .+....+....
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~~~---- 71 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAFSA---- 71 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCCCC----
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--CCeEEEEcchHHHHHHHHHHHhcC------CeEEeccccee----
Confidence 467889999999999999999999999877654 358999999999999998877643 22222111100
Q ss_pred HHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHC-CCCCcEEEEEeecCcchHHHH
Q 011065 233 MRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFL-PANRQILMFSATFPVTVKDFK 311 (494)
Q Consensus 233 ~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~-~~~~~~i~~SATl~~~~~~~~ 311 (494)
....+.-+-+.+.+.+...+.. ...+.++++||+||+|++ +..+...+..+...+ +.+.++++||||++..+..+.
T Consensus 72 -v~Tp~~l~~~l~~~~l~~~~~~-~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~ 148 (440)
T 1yks_A 72 -HGSGREVIDAMCHATLTYRMLE-PTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGTSDEFP 148 (440)
T ss_dssp -CCCSSCCEEEEEHHHHHHHHTS-SSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSC
T ss_pred -ccCCccceeeecccchhHhhhC-cccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhh
Confidence 0001112233333444433333 234789999999999998 433333333333322 367999999999987654332
Q ss_pred HhhcCCCeEEEecccccccceeEEEEeehhhhHHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCC
Q 011065 312 DKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKM 391 (494)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 391 (494)
.. ...+..+.. ..+...+...+..+. . ..+++||||++++.++.+++.|.+.++.+..+||
T Consensus 149 ~~---~~~~~~~~~------------~~~~~~~~~~~~~l~-~-~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg-- 209 (440)
T 1yks_A 149 HS---NGEIEDVQT------------DIPSEPWNTGHDWIL-A-DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR-- 209 (440)
T ss_dssp CC---SSCEEEEEC------------CCCSSCCSSSCHHHH-H-CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS--
T ss_pred hc---CCCeeEeee------------ccChHHHHHHHHHHH-h-cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc--
Confidence 21 111111110 011111111112222 2 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEE-------------------cCCCCCHHHHHHHhccccCC-
Q 011065 392 LQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVIN-------------------FDFPKNSETYLHRVGRSGRF- 451 (494)
Q Consensus 392 ~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~-------------------~~~p~s~~~~~Qr~GRagR~- 451 (494)
.+|..+++.|++|+.+|||||+++++|||+| +++||+ ++.|.+.++|.||+||+||.
T Consensus 210 --~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g 286 (440)
T 1yks_A 210 --KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNP 286 (440)
T ss_dssp --SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCT
T ss_pred --hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCC
Confidence 4688999999999999999999999999999 999996 88899999999999999997
Q ss_pred CCcceEEEEe---cccchHHHHHHHHHhCCCCccCCcch
Q 011065 452 GHLGLAVNLI---TYEDRFNLYRIEQELGTEIKQIPPHI 487 (494)
Q Consensus 452 g~~g~~~~l~---~~~~~~~~~~l~~~~~~~~~~~~~~~ 487 (494)
|.+|.|++|+ ++.+...+..++..+.....++|...
T Consensus 287 ~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~ 325 (440)
T 1yks_A 287 NRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRGGM 325 (440)
T ss_dssp TCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGGGC
T ss_pred CCCceEEEEeccCChhhhhhhhhhhHHhccccccccccc
Confidence 6899999997 67787788888877755555555443
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.1e-41 Score=358.55 Aligned_cols=306 Identities=19% Similarity=0.231 Sum_probs=220.1
Q ss_pred HHHHCCCC-----CCcHHHH-----HHHHHHh------cCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCc
Q 011065 134 GIFEKGFE-----RPSPIQE-----ESIPIAL------TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPT 197 (494)
Q Consensus 134 ~l~~~~~~-----~~~~~Q~-----~~i~~~~------~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~ 197 (494)
+++..||. .|+++|. ++|+.++ .++++++++|||||||++|++|++..+... +.++||++||
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~--~~~~lilaPT 279 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK--RLRTAVLAPT 279 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT--TCCEEEEESS
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--CCcEEEEccH
Confidence 44555666 8999999 9999888 899999999999999999999999887653 3589999999
Q ss_pred HHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCC
Q 011065 198 RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSP 277 (494)
Q Consensus 198 ~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~ 277 (494)
++||.|+.+.+..+. +. ...+. .. .....+.-+-+++.+.+.+.+... ..+.++++|||||||++ +.
T Consensus 280 r~La~Q~~~~l~~~~----i~--~~~~~--l~---~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~-~~ 346 (673)
T 2wv9_A 280 RVVAAEMAEALRGLP----VR--YLTPA--VQ---REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT-DP 346 (673)
T ss_dssp HHHHHHHHHHTTTSC----CE--ECCC--------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-CH
T ss_pred HHHHHHHHHHHhcCC----ee--eeccc--cc---ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-Cc
Confidence 999999988776442 21 11110 00 011122345566777766554443 45889999999999997 22
Q ss_pred CcHHHHHHHHHHC-CCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeehhhhHHHHHHHHHHhcC
Q 011065 278 EFQPSVEQLIRFL-PANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQ 356 (494)
Q Consensus 278 ~~~~~~~~~~~~~-~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~ 356 (494)
.+...+..+...+ +.+.++|+||||++..+..+... ...+..+.... +.......+..+. . .
T Consensus 347 ~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~---~~~i~~v~~~~------------~~~~~~~~l~~l~-~-~ 409 (673)
T 2wv9_A 347 ASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT---NSPVHDVSSEI------------PDRAWSSGFEWIT-D-Y 409 (673)
T ss_dssp HHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC---SSCEEEEECCC------------CSSCCSSCCHHHH-S-C
T ss_pred cHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc---CCceEEEeeec------------CHHHHHHHHHHHH-h-C
Confidence 2222333333333 26789999999998765433221 11111111111 1111111122222 2 4
Q ss_pred CCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEE-----
Q 011065 357 INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVIN----- 431 (494)
Q Consensus 357 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~----- 431 (494)
.+++||||++++.++.+++.|.+.++.+..+||. +|..+++.|++|+.+|||||+++++|||+| +++||+
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~ 484 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSV 484 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcc
Confidence 6799999999999999999999999999999994 788999999999999999999999999999 999998
Q ss_pred ---------------cCCCCCHHHHHHHhccccCC-CCcceEEEEe---cccchHHHHHHHHHh
Q 011065 432 ---------------FDFPKNSETYLHRVGRSGRF-GHLGLAVNLI---TYEDRFNLYRIEQEL 476 (494)
Q Consensus 432 ---------------~~~p~s~~~~~Qr~GRagR~-g~~g~~~~l~---~~~~~~~~~~l~~~~ 476 (494)
++.|.+.++|.||+||+||. |++|.||+|+ ++.|...+..++..+
T Consensus 485 ~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 485 KPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp CEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred cceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 56899999999999999998 7899999997 566766666666655
No 48
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=4.9e-40 Score=337.62 Aligned_cols=291 Identities=20% Similarity=0.226 Sum_probs=223.6
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcE-EE
Q 011065 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQ-VM 220 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~-~~ 220 (494)
.|+++|.++++.++.+++++++++||+|||++|+.++... +.++||+||+++|+.|+.+.+.++ ++. +.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~ 162 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYVG 162 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG----CGGGEE
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC----CCcceE
Confidence 7999999999999999999999999999999999888765 237999999999999988887774 677 77
Q ss_pred EEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 011065 221 VTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (494)
Q Consensus 221 ~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 300 (494)
.+.|+.. ...+|+|+|++.+...... ...++++||+||||++.+..+.. ++..+ ...+++++|
T Consensus 163 ~~~g~~~---------~~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~~l~lS 225 (472)
T 2fwr_A 163 EFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFRLGLT 225 (472)
T ss_dssp EBSSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSEEEEEE
T ss_pred EECCCcC---------CcCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHHH----HHHhc-CCCeEEEEe
Confidence 7777764 3478999999998876542 12469999999999998877653 45555 467899999
Q ss_pred eecCc-------------------chHHHHHhhcCCCeEEEecccccc---------------------------cceeE
Q 011065 301 ATFPV-------------------TVKDFKDKYLQKPYVINLMDELTL---------------------------KGITQ 334 (494)
Q Consensus 301 ATl~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~ 334 (494)
||+.. ...++...++..+....+...... ..+..
T Consensus 226 ATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 305 (472)
T 2fwr_A 226 ATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNK 305 (472)
T ss_dssp SCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTT
T ss_pred cCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHH
Confidence 99862 222222222322222111100000 00000
Q ss_pred EE---------------------EeehhhhHHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCH
Q 011065 335 YY---------------------AFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQ 393 (494)
Q Consensus 335 ~~---------------------~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 393 (494)
.+ .......|...+..++.....+++||||++.+.++.+++.| .+..+||+++.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l-----~~~~~~g~~~~ 380 (472)
T 2fwr_A 306 IVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVF-----LIPAITHRTSR 380 (472)
T ss_dssp TTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHT-----TCCBCCSSSCS
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHh-----CcceeeCCCCH
Confidence 00 00112346677888888877889999999999999999987 36679999999
Q ss_pred HHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCc---ceEEEEeccc
Q 011065 394 DHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHL---GLAVNLITYE 464 (494)
Q Consensus 394 ~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~---g~~~~l~~~~ 464 (494)
.+|..+++.|++|..+|||||+++++|+|+|++++||+++.|+|...|.||+||+||.|+. ..+|.|++.+
T Consensus 381 ~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 381 EEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp HHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred HHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999843 3455566654
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=5.2e-40 Score=334.40 Aligned_cols=281 Identities=19% Similarity=0.196 Sum_probs=197.4
Q ss_pred HHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCC
Q 011065 147 QEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGT 226 (494)
Q Consensus 147 Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~ 226 (494)
+......+..++++++++|||||||++|++|++..+... +.++||++||++|+.|+.+.+. +..+....+..
T Consensus 11 ~~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~ 82 (459)
T 2z83_A 11 GRGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ--RLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAV 82 (459)
T ss_dssp ----CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT--TCCEEEEECSHHHHHHHHHHTT------TSCEEECC---
T ss_pred HHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEECchHHHHHHHHHHhc------CceEeEEeccc
Confidence 333455566788999999999999999999999887653 3489999999999999888776 23333222111
Q ss_pred ChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHH-HCCCCCcEEEEEeecCc
Q 011065 227 SLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIR-FLPANRQILMFSATFPV 305 (494)
Q Consensus 227 ~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~-~~~~~~~~i~~SATl~~ 305 (494)
.. ....+..+.++|.+.+...+... ..+.++++|||||||++. ..+...+..+.. ..+.+.|+|+||||++.
T Consensus 83 ~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~-~~~~~~~~~~~~~~~~~~~~~il~SAT~~~ 155 (459)
T 2z83_A 83 QR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTD-PASIAARGYIATKVELGEAAAIFMTATPPG 155 (459)
T ss_dssp ----------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCS-HHHHHHHHHHHHHHHTTSCEEEEECSSCTT
T ss_pred cc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCC-chhhHHHHHHHHHhccCCccEEEEEcCCCc
Confidence 11 01244568889999888766654 458899999999999841 111111111111 12367899999999987
Q ss_pred chHHHHHhhcCCCeEEEecccccccceeEEEEeehhhhHHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEE
Q 011065 306 TVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCF 385 (494)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~ 385 (494)
.+..+... ..|. ..+......... .... .++.. ..+++||||++++.++.+++.|.+.++.+.
T Consensus 156 ~~~~~~~~--~~pi-~~~~~~~~~~~~---------~~~~----~~l~~-~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~ 218 (459)
T 2z83_A 156 TTDPFPDS--NAPI-HDLQDEIPDRAW---------SSGY----EWITE-YAGKTVWFVASVKMGNEIAMCLQRAGKKVI 218 (459)
T ss_dssp CCCSSCCC--SSCE-EEEECCCCSSCC---------SSCC----HHHHH-CCSCEEEECSCHHHHHHHHHHHHHTTCCEE
T ss_pred chhhhccC--CCCe-EEecccCCcchh---------HHHH----HHHHh-cCCCEEEEeCChHHHHHHHHHHHhcCCcEE
Confidence 65433221 1222 111111110000 0111 12222 367999999999999999999999999999
Q ss_pred EEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEE--------------------cCCCCCHHHHHHHh
Q 011065 386 YIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVIN--------------------FDFPKNSETYLHRV 445 (494)
Q Consensus 386 ~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~--------------------~~~p~s~~~~~Qr~ 445 (494)
.+|+. +|..+++.|++|+.+|||||+++++|||+|+ ++||+ ++.|.|.++|+||+
T Consensus 219 ~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~ 293 (459)
T 2z83_A 219 QLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRR 293 (459)
T ss_dssp EESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHH
T ss_pred ecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhc
Confidence 99985 6788999999999999999999999999999 99999 67999999999999
Q ss_pred ccccCCCC-cceEEEEeccc
Q 011065 446 GRSGRFGH-LGLAVNLITYE 464 (494)
Q Consensus 446 GRagR~g~-~g~~~~l~~~~ 464 (494)
|||||.|. +|.|++|+++.
T Consensus 294 GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 294 GRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp TTSSCCTTCCCEEEEECSCC
T ss_pred cccCCCCCCCCeEEEEEccc
Confidence 99999997 89999999875
No 50
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=7.2e-38 Score=316.07 Aligned_cols=269 Identities=14% Similarity=0.138 Sum_probs=191.4
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhc
Q 011065 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLY 236 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 236 (494)
++++++++|||||||++|++|+++.+...+ .+++|++||++|+.|+.+.+. +..+....+.... ...
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~g--~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-----~~~ 68 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKR--LRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-----ERT 68 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHTT--CCEEEEESSHHHHHHHHHHTT------TSCEEEC--------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhCC--CCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc-----cCC
Confidence 678999999999999999999996665433 489999999999999887665 3455544443221 112
Q ss_pred CCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHH-CCCCCcEEEEEeecCcchHHHHHhhc
Q 011065 237 QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRF-LPANRQILMFSATFPVTVKDFKDKYL 315 (494)
Q Consensus 237 ~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~-~~~~~~~i~~SATl~~~~~~~~~~~~ 315 (494)
.+..+.++|.+.+.+.+.. ...+.++++||+||+|++ ...+......+... .+.+.++++||||++..+.++...
T Consensus 69 ~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~~-- 144 (431)
T 2v6i_A 69 GNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPPS-- 144 (431)
T ss_dssp CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCCC--
T ss_pred CCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcCC--
Confidence 3456778899988775555 345889999999999997 32233333333333 256899999999998654332211
Q ss_pred CCCeEEEecccccccceeEEEEeehhhhHHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHH
Q 011065 316 QKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDH 395 (494)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 395 (494)
.+.+..+.... +.. +...+...+.. ..+++||||+++++++.+++.|.+.++.+..+||. +
T Consensus 145 -~~~i~~~~~~~------------~~~-~~~~~~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~ 205 (431)
T 2v6i_A 145 -NSPIIDEETRI------------PDK-AWNSGYEWITE-FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----T 205 (431)
T ss_dssp -SSCCEEEECCC------------CSS-CCSSCCHHHHS-CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----T
T ss_pred -CCceeeccccC------------CHH-HHHHHHHHHHc-CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----c
Confidence 11111111111 000 01111222333 35799999999999999999999999999999997 5
Q ss_pred HHHHHHHhhcCCccEEEEcCcccccCCCCCCCE-----------------EEEcCCCCCHHHHHHHhccccCCCCcceEE
Q 011065 396 RNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNV-----------------VINFDFPKNSETYLHRVGRSGRFGHLGLAV 458 (494)
Q Consensus 396 r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~-----------------VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~ 458 (494)
|..+++.|++|+.+|||||+++++|+|+| +.+ ||+++.|.+.++|.||+||+||.|..+.|+
T Consensus 206 r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~ 284 (431)
T 2v6i_A 206 FESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDI 284 (431)
T ss_dssp HHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCE
T ss_pred HHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeE
Confidence 77899999999999999999999999999 655 577889999999999999999998544444
Q ss_pred EEec
Q 011065 459 NLIT 462 (494)
Q Consensus 459 ~l~~ 462 (494)
.++.
T Consensus 285 ~~~~ 288 (431)
T 2v6i_A 285 YAYS 288 (431)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 4443
No 51
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=4e-36 Score=315.18 Aligned_cols=299 Identities=18% Similarity=0.177 Sum_probs=217.2
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECC
Q 011065 146 IQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGG 225 (494)
Q Consensus 146 ~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~ 225 (494)
.+.......+.+++++++||||||||+. ++..+...+ .++|++|+++||.|+++.+++. ++.+..++|+
T Consensus 144 ~~~~p~ar~l~rk~vlv~apTGSGKT~~----al~~l~~~~---~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~ 212 (677)
T 3rc3_A 144 PNWYPDARAMQRKIIFHSGPTNSGKTYH----AIQKYFSAK---SGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGE 212 (677)
T ss_dssp GGGCHHHHTSCCEEEEEECCTTSSHHHH----HHHHHHHSS---SEEEEESSHHHHHHHHHHHHHT----TCCEEEECSS
T ss_pred hhhCHHHHhcCCCEEEEEcCCCCCHHHH----HHHHHHhcC---CeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECC
Confidence 3434445567889999999999999994 444444433 3499999999999999988775 5778888888
Q ss_pred CChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCC-CCCcEEEEEeecC
Q 011065 226 TSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLP-ANRQILMFSATFP 304 (494)
Q Consensus 226 ~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~-~~~~~i~~SATl~ 304 (494)
..... .......+++++|++.+. ....+++|||||||++.+.++...+..++..++ ...+++++|||.+
T Consensus 213 ~~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~ 282 (677)
T 3rc3_A 213 ERVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID 282 (677)
T ss_dssp CEECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH
T ss_pred eeEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHH
Confidence 66510 000113578888876542 256789999999999999999999999988887 6789999999953
Q ss_pred cchHHHHHhhcCCCeEEEecccccccceeEEEEeehhhhHHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcE
Q 011065 305 VTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSC 384 (494)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~ 384 (494)
.+..+.... .....+....... ... . ... . + ..+.... ...||||+++++++.+++.|.+.++.+
T Consensus 283 -~i~~l~~~~-~~~~~v~~~~r~~--~l~---~-~~~--~---l-~~l~~~~-~g~iIf~~s~~~ie~la~~L~~~g~~v 347 (677)
T 3rc3_A 283 -LVMELMYTT-GEEVEVRDYKRLT--PIS---V-LDH--A---L-ESLDNLR-PGDCIVCFSKNDIYSVSRQIEIRGLES 347 (677)
T ss_dssp -HHHHHHHHH-TCCEEEEECCCSS--CEE---E-CSS--C---C-CSGGGCC-TTEEEECSSHHHHHHHHHHHHHTTCCC
T ss_pred -HHHHHHHhc-CCceEEEEeeecc--hHH---H-HHH--H---H-HHHHhcC-CCCEEEEcCHHHHHHHHHHHHhcCCCe
Confidence 233333332 2332221111110 000 0 000 0 0 0111223 345889999999999999999999999
Q ss_pred EEEccCCCHHHHHHHHHHhhc--CCccEEEEcCcccccCCCCCCCEEEEcCC--------------CCCHHHHHHHhccc
Q 011065 385 FYIHAKMLQDHRNRVFHDFRN--GACRNLVCTDLFTRGIDIQAVNVVINFDF--------------PKNSETYLHRVGRS 448 (494)
Q Consensus 385 ~~~~~~~~~~~r~~i~~~f~~--g~~~vlvaT~~~~~Gidi~~v~~VI~~~~--------------p~s~~~~~Qr~GRa 448 (494)
.++||+|++++|..+++.|++ |.++|||||+++++|||+ ++++||+++. |.|.++|+||+|||
T Consensus 348 ~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRA 426 (677)
T 3rc3_A 348 AVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRA 426 (677)
T ss_dssp EEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTB
T ss_pred eeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCC
Confidence 999999999999999999999 889999999999999999 9999999998 78999999999999
Q ss_pred cCCCCc---ceEEEEecccchHHHHHHHHHhCCCCcc
Q 011065 449 GRFGHL---GLAVNLITYEDRFNLYRIEQELGTEIKQ 482 (494)
Q Consensus 449 gR~g~~---g~~~~l~~~~~~~~~~~l~~~~~~~~~~ 482 (494)
||.|.. |.|++++.. +...+.++......+++.
T Consensus 427 GR~g~~g~~G~v~~l~~~-d~~~~~~~~~~~~~~i~~ 462 (677)
T 3rc3_A 427 GRFSSRFKEGEVTTMNHE-DLSLLKEILKRPVDPIRA 462 (677)
T ss_dssp TCTTSSCSSEEEEESSTT-HHHHHHHHHHSCCCCCCC
T ss_pred CCCCCCCCCEEEEEEecc-hHHHHHHHHhcCcchhhh
Confidence 999854 777776654 444455555444444433
No 52
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=4.4e-37 Score=324.02 Aligned_cols=327 Identities=15% Similarity=0.195 Sum_probs=202.4
Q ss_pred CCcHHHHHHHHHHhc----C-CcEEEEccCCCchhHHhHHHHHHhhhcCC-------CceEEEEEcCcHHHHHHHH-HHH
Q 011065 142 RPSPIQEESIPIALT----G-SDILARAKNGTGKTAAFCIPALEKIDQDN-------NVIQVVILVPTRELALQTS-QVC 208 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~----~-~~~ii~~~TGsGKT~~~~~~~l~~l~~~~-------~~~~~lil~P~~~la~q~~-~~~ 208 (494)
.|+++|.++++.+++ + ++++++++||||||++++..+. .+...+ ...++|||||+++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~-~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISW-KLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHH-HHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHH-HHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 799999999999876 4 5599999999999999655444 443333 4568999999999999988 666
Q ss_pred HHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhc----CCccccccceEEecccccccCCCcHHHHH
Q 011065 209 KELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKK----GVCILKDCSMLVMDEADKLLSPEFQPSVE 284 (494)
Q Consensus 209 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~----~~~~l~~~~~iViDEah~~~~~~~~~~~~ 284 (494)
+.+. ..+..+.++ ......+|+|+|+++|...... .......+++||+||||++.... ...+.
T Consensus 257 ~~~~----~~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 257 TPFG----DARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTTC----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred Hhcc----hhhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 6553 233333322 1235679999999999876431 12335678999999999986532 24566
Q ss_pred HHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEE------------------EecccccccceeEE-----------
Q 011065 285 QLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVI------------------NLMDELTLKGITQY----------- 335 (494)
Q Consensus 285 ~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~----------- 335 (494)
.++..++ +.++++||||+..........++..+... .+............
T Consensus 324 ~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (590)
T 3h1t_A 324 EILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREI 402 (590)
T ss_dssp HHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------
T ss_pred HHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccc
Confidence 7777775 46789999997644433333333332221 11111000000000
Q ss_pred ----EEeeh------hhhHHH----HHHHHHHh-cCCCcEEEEecChhHHHHHHHHHHHcCCc--------EEEEccCCC
Q 011065 336 ----YAFVE------ERQKVH----CLNTLFSK-LQINQSIIFCNSVNRVELLAKKITELGYS--------CFYIHAKML 392 (494)
Q Consensus 336 ----~~~~~------~~~k~~----~l~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~~~~--------~~~~~~~~~ 392 (494)
+.... ...+.. .+..++.. ...+++||||+++++|+.+++.|.+.+.. +..+||.++
T Consensus 403 ~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~ 482 (590)
T 3h1t_A 403 PDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG 482 (590)
T ss_dssp ------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH
T ss_pred ccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh
Confidence 00000 001111 23333333 24579999999999999999999876432 778899876
Q ss_pred HHHHHHHHHHhhcCCcc---EEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCC--cceEEEEeccc-ch
Q 011065 393 QDHRNRVFHDFRNGACR---NLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGH--LGLAVNLITYE-DR 466 (494)
Q Consensus 393 ~~~r~~i~~~f~~g~~~---vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~--~g~~~~l~~~~-~~ 466 (494)
. +|..+++.|++|+.+ |||||+++++|+|+|++++||+++.|.|...|.||+||+||.+. .+..+.+++.. ..
T Consensus 483 ~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~g~~ 561 (590)
T 3h1t_A 483 K-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYTGSA 561 (590)
T ss_dssp H-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECSSSH
T ss_pred H-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecCCcH
Confidence 4 799999999998766 88899999999999999999999999999999999999999875 34455566644 44
Q ss_pred HHHHHHHHHhCCCCccCC
Q 011065 467 FNLYRIEQELGTEIKQIP 484 (494)
Q Consensus 467 ~~~~~l~~~~~~~~~~~~ 484 (494)
..+..-+++-+.+....+
T Consensus 562 ~~~f~d~~~d~~~~~~~~ 579 (590)
T 3h1t_A 562 TQNFADPDFDGYPEIEDE 579 (590)
T ss_dssp HHHTCCHHHHCCCSEEEE
T ss_pred HHHccCCCCCCCCccccC
Confidence 333333455555554443
No 53
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=7.1e-36 Score=278.75 Aligned_cols=209 Identities=30% Similarity=0.521 Sum_probs=192.8
Q ss_pred cCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcC-----CCceE
Q 011065 116 ATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD-----NNVIQ 190 (494)
Q Consensus 116 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~-----~~~~~ 190 (494)
+.+..+|.++++++.+++.+.+.||..|+++|.++++.++.++++++++|||||||++|++|++..+... ..+++
T Consensus 25 p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~ 104 (242)
T 3fe2_A 25 PKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPI 104 (242)
T ss_dssp CCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCS
T ss_pred CCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCE
Confidence 3455679999999999999999999999999999999999999999999999999999999999988642 34568
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecc
Q 011065 191 VVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDE 270 (494)
Q Consensus 191 ~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDE 270 (494)
+||++|+++|+.|+.+.++++....++.+..++|+.....+...+..+++|+|+||++|.+++......+.++++||+||
T Consensus 105 ~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDE 184 (242)
T 3fe2_A 105 CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDE 184 (242)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETT
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeC
Confidence 99999999999999999999998889999999999998888777778899999999999999888777889999999999
Q ss_pred cccccCCCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEec
Q 011065 271 ADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLM 324 (494)
Q Consensus 271 ah~~~~~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~ 324 (494)
||++.+.+|...+..++..++++.|+++||||++..+.++...++.+|..+.+.
T Consensus 185 ah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~ 238 (242)
T 3fe2_A 185 ADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG 238 (242)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999999999999999999999999999999887764
No 54
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=3.1e-35 Score=267.57 Aligned_cols=202 Identities=63% Similarity=1.011 Sum_probs=187.5
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHH
Q 011065 120 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE 199 (494)
Q Consensus 120 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~ 199 (494)
.+|+++++++.+++.+.+.||..|+++|.++++.+++++++++.+|||||||++|++|++..+.....+.++||++|+++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 82 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRE 82 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHH
Confidence 56999999999999999999999999999999999999999999999999999999999998876666678999999999
Q ss_pred HHHHHHHHHHHHhccC-CcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCC
Q 011065 200 LALQTSQVCKELGKHL-NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE 278 (494)
Q Consensus 200 la~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~ 278 (494)
|+.|+.+.+.++.... +..+..+.|+.....+...+...++|+|+||+++.+.+......+.++++||+||||++.+.+
T Consensus 83 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~ 162 (206)
T 1vec_A 83 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD 162 (206)
T ss_dssp HHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhC
Confidence 9999999999998776 788999999999888877777889999999999999888877778999999999999999999
Q ss_pred cHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEE
Q 011065 279 FQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVI 321 (494)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~ 321 (494)
|...+..++..++.+.+++++|||++..+.++...++.+|..+
T Consensus 163 ~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 163 FVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp THHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred cHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999999999998899999999999999999999999988654
No 55
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=8.3e-35 Score=272.26 Aligned_cols=205 Identities=32% Similarity=0.568 Sum_probs=188.8
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcH
Q 011065 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (494)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (494)
..+|+++++++.+++.+.+.||..|+++|.++++.++.++++++++|||||||++|++|++..+.....+.++||++|++
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr 121 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTR 121 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSH
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCH
Confidence 35699999999999999999999999999999999999999999999999999999999999988776667899999999
Q ss_pred HHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhc-CCccccccceEEecccccccCC
Q 011065 199 ELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKK-GVCILKDCSMLVMDEADKLLSP 277 (494)
Q Consensus 199 ~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~-~~~~l~~~~~iViDEah~~~~~ 277 (494)
+|+.|+.+.++++....++.+..++|+.....+...+..+++|+|+||++|.+++.. ....+.++++||+||||++.+.
T Consensus 122 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~ 201 (249)
T 3ber_A 122 ELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNM 201 (249)
T ss_dssp HHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHT
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhcc
Confidence 999999999999998889999999999988877777778899999999999998775 3456889999999999999999
Q ss_pred CcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEe
Q 011065 278 EFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINL 323 (494)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~ 323 (494)
+|...+..++..++.+.++++||||++..+.++...++.+|..+.+
T Consensus 202 ~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 202 DFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp TCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred ChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999999989999999999999999999999999977654
No 56
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=9.5e-35 Score=268.94 Aligned_cols=210 Identities=38% Similarity=0.629 Sum_probs=184.6
Q ss_pred ccccCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEE
Q 011065 113 DVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVV 192 (494)
Q Consensus 113 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~l 192 (494)
+.......+|+++++++.+.+.+.+.||..|+++|.++++.+++++++++++|||||||++|++|++..+.....+.++|
T Consensus 17 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~l 96 (230)
T 2oxc_A 17 DVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQIL 96 (230)
T ss_dssp -------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEE
T ss_pred CCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEE
Confidence 34445556799999999999999999999999999999999999999999999999999999999999987666667999
Q ss_pred EEcCcHHHHHHHHHHHHHHhccC-CcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEeccc
Q 011065 193 ILVPTRELALQTSQVCKELGKHL-NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEA 271 (494)
Q Consensus 193 il~P~~~la~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEa 271 (494)
|++|+++|+.|+.+.++++.... ++.+..+.|+.....+...+ ..++|+|+||+++.+++......+.++++||+|||
T Consensus 97 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEa 175 (230)
T 2oxc_A 97 ILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEA 175 (230)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSH
T ss_pred EEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCc
Confidence 99999999999999999998665 78899999998877665554 57899999999999988887777899999999999
Q ss_pred ccccCCC-cHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEe
Q 011065 272 DKLLSPE-FQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINL 323 (494)
Q Consensus 272 h~~~~~~-~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~ 323 (494)
|++.+.+ |...+..++..++...|++++|||++..+.++...++.+|..+.+
T Consensus 176 h~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 176 DKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp HHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred hHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 9998886 999999999999989999999999999999999999998876643
No 57
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=3.9e-35 Score=269.50 Aligned_cols=205 Identities=34% Similarity=0.553 Sum_probs=186.2
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHH
Q 011065 120 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE 199 (494)
Q Consensus 120 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~ 199 (494)
.+|+++++++.+++.+.+.||..|+++|.++++.+++++++++++|||||||++|++|++..+.....+.++||++|+++
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 83 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRE 83 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHH
Confidence 46999999999999999999999999999999999999999999999999999999999999877666678999999999
Q ss_pred HHHHHHHHHHHHhccC----CcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEeccccccc
Q 011065 200 LALQTSQVCKELGKHL----NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLL 275 (494)
Q Consensus 200 la~q~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~ 275 (494)
|+.|+.+.++++.... ++.+..++|+.........+..+++|+|+||+++.+++......+.++++||+||||++.
T Consensus 84 L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~ 163 (219)
T 1q0u_A 84 LATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLML 163 (219)
T ss_dssp HHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHh
Confidence 9999999999998766 678888899887665555555678999999999999888877778999999999999999
Q ss_pred CCCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEec
Q 011065 276 SPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLM 324 (494)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~ 324 (494)
+.+|...+..++..++.+.|++++|||++.++.++...++.+|..+.+.
T Consensus 164 ~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 164 DMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp HTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred hhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEee
Confidence 8999999999999998899999999999999999999999999877553
No 58
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=6.8e-35 Score=269.68 Aligned_cols=206 Identities=33% Similarity=0.585 Sum_probs=179.9
Q ss_pred cCCCCcccc-cCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcC------CCc
Q 011065 116 ATKGNEFED-YFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD------NNV 188 (494)
Q Consensus 116 ~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~------~~~ 188 (494)
+.+..+|++ +++++.+++++.+.||..|+++|.++++.+++++++++++|||||||++|++|++..+... ..+
T Consensus 15 p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~ 94 (228)
T 3iuy_A 15 PKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNG 94 (228)
T ss_dssp CCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CC
T ss_pred CCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCC
Confidence 344567888 7999999999999999999999999999999999999999999999999999999887542 245
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEe
Q 011065 189 IQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVM 268 (494)
Q Consensus 189 ~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iVi 268 (494)
.++||++|+++|+.|+.+.++++. ..++.+..++|+.....+...+..+++|+|+||+++.+++......+.++++||+
T Consensus 95 ~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 95 PGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVI 173 (228)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEE
T ss_pred CcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEE
Confidence 689999999999999999999986 4578888899988877777777788999999999999988887777899999999
Q ss_pred cccccccCCCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEE
Q 011065 269 DEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVIN 322 (494)
Q Consensus 269 DEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~ 322 (494)
||||++.+.+|...+..++..++++.|+++||||+|..+.++...++.+|..+.
T Consensus 174 DEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 174 DEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp CCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred ECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 999999999999999999999999999999999999999999999999987664
No 59
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=3.3e-35 Score=323.12 Aligned_cols=329 Identities=16% Similarity=0.151 Sum_probs=227.7
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEE
Q 011065 142 RPSPIQEESIPIALTG--SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQV 219 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~ 219 (494)
.|+|+|.+++..++.. ..++++++||+|||.+++..+...+... ...++|||||+ .|+.||...+.+.. ++.+
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g-~~~rvLIVvP~-sLl~Qw~~E~~~~f---~l~v 227 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG-AAERVLIIVPE-TLQHQWLVEMLRRF---NLRF 227 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS-SCCCEEEECCT-TTHHHHHHHHHHHS---CCCC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEeCH-HHHHHHHHHHHHHh---CCCE
Confidence 6899999999998875 3699999999999999877776665443 33479999999 99999888876554 4555
Q ss_pred EEEECCCChHHHHH---HhcCCCeEEEEchHHHHHhHhc-CCccccccceEEecccccccCCCcH--HHHHHHHHHCCCC
Q 011065 220 MVTTGGTSLKDDIM---RLYQPVHLLVGTPGRILDLSKK-GVCILKDCSMLVMDEADKLLSPEFQ--PSVEQLIRFLPAN 293 (494)
Q Consensus 220 ~~~~g~~~~~~~~~---~~~~~~~Ilv~T~~~l~~~~~~-~~~~l~~~~~iViDEah~~~~~~~~--~~~~~~~~~~~~~ 293 (494)
..+.++.... ... ......+|+|+|++.+...... ......++++||+||||++.+.... ..+..+.......
T Consensus 228 ~v~~~~~~~~-~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~ 306 (968)
T 3dmq_A 228 ALFDDERYAE-AQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHV 306 (968)
T ss_dssp EECCHHHHHH-HHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTC
T ss_pred EEEccchhhh-hhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcC
Confidence 5544432211 111 1123568999999988642211 1123457999999999998653321 2233333333345
Q ss_pred CcEEEEEeecCc-c---hHHHHHh----------------------------hcCC------------------------
Q 011065 294 RQILMFSATFPV-T---VKDFKDK----------------------------YLQK------------------------ 317 (494)
Q Consensus 294 ~~~i~~SATl~~-~---~~~~~~~----------------------------~~~~------------------------ 317 (494)
..++++|||+.. . +..+... +...
T Consensus 307 ~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~ 386 (968)
T 3dmq_A 307 PGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLL 386 (968)
T ss_dssp SSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTG
T ss_pred CcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHH
Confidence 568999999632 1 1111000 0000
Q ss_pred ----------------------------CeEEEe-c---ccccccceeEEE-----------------------------
Q 011065 318 ----------------------------PYVINL-M---DELTLKGITQYY----------------------------- 336 (494)
Q Consensus 318 ----------------------------~~~~~~-~---~~~~~~~~~~~~----------------------------- 336 (494)
...+.. . ............
T Consensus 387 ~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (968)
T 3dmq_A 387 QAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARD 466 (968)
T ss_dssp GGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHH
T ss_pred hcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhh
Confidence 000000 0 000000000000
Q ss_pred ----------------EeehhhhHHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHH-cCCcEEEEccCCCHHHHHHH
Q 011065 337 ----------------AFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITE-LGYSCFYIHAKMLQDHRNRV 399 (494)
Q Consensus 337 ----------------~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~r~~i 399 (494)
.+.....|...+..++.....+++||||+++..++.+++.|.. .++.+..+||+|++.+|..+
T Consensus 467 ~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~ 546 (968)
T 3dmq_A 467 MLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRA 546 (968)
T ss_dssp HHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHH
T ss_pred hcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHH
Confidence 1122345788888888887888999999999999999999995 59999999999999999999
Q ss_pred HHHhhcCC--ccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHh
Q 011065 400 FHDFRNGA--CRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQEL 476 (494)
Q Consensus 400 ~~~f~~g~--~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~ 476 (494)
++.|++|+ .+|||||+++++|+|+|++++||++++|+++..|.||+||+||.|+.|.|++++...+......+.+.+
T Consensus 547 l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 547 AAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWY 625 (968)
T ss_dssp HHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHH
T ss_pred HHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHH
Confidence 99999998 999999999999999999999999999999999999999999999988766655433333334444444
No 60
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=7e-35 Score=271.08 Aligned_cols=205 Identities=36% Similarity=0.614 Sum_probs=177.6
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcH
Q 011065 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (494)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (494)
..+|+++++++.+++.+.+.||..|+++|.++++.++.++++++.+|||||||++|++|++..+.....+.++||++|++
T Consensus 29 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~ 108 (237)
T 3bor_A 29 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTR 108 (237)
T ss_dssp CCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcH
Confidence 35699999999999999999999999999999999999999999999999999999999999987655667899999999
Q ss_pred HHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCC-CeEEEEchHHHHHhHhcCCccccccceEEecccccccCC
Q 011065 199 ELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQP-VHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSP 277 (494)
Q Consensus 199 ~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~ 277 (494)
+|+.|+.+.+++++...+..+..+.|+.....+...+..+ ++|+|+||++|.+++......+.++++||+||||++.+.
T Consensus 109 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~ 188 (237)
T 3bor_A 109 ELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR 188 (237)
T ss_dssp HHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhcc
Confidence 9999999999999888888898899988777665555544 899999999999988887777889999999999999888
Q ss_pred CcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEe
Q 011065 278 EFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINL 323 (494)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~ 323 (494)
+|...+..++..++.+.|++++|||++..+.++...++.+|..+.+
T Consensus 189 ~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 189 GFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp TCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred CcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999999999999999999999999999999999877654
No 61
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=3.5e-34 Score=264.18 Aligned_cols=205 Identities=39% Similarity=0.637 Sum_probs=179.5
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcH
Q 011065 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (494)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (494)
..+|+++++++.+++.+.+.||..|+++|.++++.+++++++++.+|||||||++|++|++..+.....+.++||++|++
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 92 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTR 92 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSH
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCH
Confidence 45799999999999999999999999999999999999999999999999999999999999987766677999999999
Q ss_pred HHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCC
Q 011065 199 ELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE 278 (494)
Q Consensus 199 ~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~ 278 (494)
+|+.|+.+.+.++....++.+..+.|+.....+...+. .++|+|+||+++.+.+......+.++++||+||||++.+.+
T Consensus 93 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~ 171 (224)
T 1qde_A 93 ELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG 171 (224)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEEECC----------CT-TCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhh
Confidence 99999999999998888899999999887766655443 48999999999999888877778999999999999998889
Q ss_pred cHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEec
Q 011065 279 FQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLM 324 (494)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~ 324 (494)
|...+..++..++.+.|++++|||++..+.++...++.+|..+.+.
T Consensus 172 ~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~ 217 (224)
T 1qde_A 172 FKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVK 217 (224)
T ss_dssp CHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC--
T ss_pred hHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999999999999999999777654
No 62
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=2e-34 Score=276.77 Aligned_cols=204 Identities=37% Similarity=0.605 Sum_probs=183.1
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc
Q 011065 118 KGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTG--SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (494)
Q Consensus 118 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (494)
...+|+++++++.+++.+.+.||..|+++|.++|+.++.+ +++++++|||||||++|++|++..+.....++++||++
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~ 169 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLS 169 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEc
Confidence 4568999999999999999999999999999999999998 89999999999999999999999998877777999999
Q ss_pred CcHHHHHHHHHHHHHHhccC-CcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhc-CCccccccceEEeccccc
Q 011065 196 PTRELALQTSQVCKELGKHL-NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKK-GVCILKDCSMLVMDEADK 273 (494)
Q Consensus 196 P~~~la~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~-~~~~l~~~~~iViDEah~ 273 (494)
||++|+.|+.+.+..+.... ++.+....|+...... ....++|+|+||++|++++.+ ....+.++++|||||||+
T Consensus 170 PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~ 246 (300)
T 3fmo_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 246 (300)
T ss_dssp SSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHH
T ss_pred CcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHH
Confidence 99999999999999998764 6788888887765422 135679999999999998865 456689999999999999
Q ss_pred ccC-CCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEec
Q 011065 274 LLS-PEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLM 324 (494)
Q Consensus 274 ~~~-~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~ 324 (494)
+++ .+|...+..++..++.++|++++|||++..+..+...++.+|..+.+.
T Consensus 247 l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 247 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp HHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred HhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 887 689999999999999999999999999999999999999999887764
No 63
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=8.7e-34 Score=263.68 Aligned_cols=206 Identities=36% Similarity=0.571 Sum_probs=182.7
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcC----CCceEEEEE
Q 011065 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD----NNVIQVVIL 194 (494)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~----~~~~~~lil 194 (494)
..+|.++++++.+++.+.+.||..|+++|.++++.++.++++++++|||||||++|++|++..+... ..+.++||+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil 103 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLII 103 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEE
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEE
Confidence 3469999999999999999999999999999999999999999999999999999999999887542 234589999
Q ss_pred cCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcC-CccccccceEEeccccc
Q 011065 195 VPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG-VCILKDCSMLVMDEADK 273 (494)
Q Consensus 195 ~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~-~~~l~~~~~iViDEah~ 273 (494)
+|+++|+.|+.+.++++....++.+..++|+.....+...+ .+++|+|+||+++.+++... ...+.++++||+||||+
T Consensus 104 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 182 (236)
T 2pl3_A 104 SPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADR 182 (236)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHH
T ss_pred eCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHH
Confidence 99999999999999999988889999999998877665554 57899999999999877654 45578999999999999
Q ss_pred ccCCCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecc
Q 011065 274 LLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMD 325 (494)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~ 325 (494)
+.+.+|...+..++..++.+.|++++|||++..+.++...++.+|..+.+.+
T Consensus 183 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 183 ILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp HHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred HhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 9999999999999999999999999999999999999999999998776543
No 64
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.1e-33 Score=260.22 Aligned_cols=203 Identities=38% Similarity=0.649 Sum_probs=182.2
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHH
Q 011065 120 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE 199 (494)
Q Consensus 120 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~ 199 (494)
..|+++++++.+++.+.+.||..|+++|.++++.+++++++++++|||+|||++|++|++..+.....+.++||+||+++
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 93 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 93 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHH
Confidence 46999999999999999999999999999999999999999999999999999999999998876655668999999999
Q ss_pred HHHHHHHHHHHHhccC-CcEEEEEECCCChHHHHHHhc-CCCeEEEEchHHHHHhHhcCCccccccceEEecccccccC-
Q 011065 200 LALQTSQVCKELGKHL-NIQVMVTTGGTSLKDDIMRLY-QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS- 276 (494)
Q Consensus 200 la~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~- 276 (494)
|+.|+.+.++++.... ++.+..+.|+.....+...+. ..++|+|+||+++..++......+.++++||+||||++.+
T Consensus 94 L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~ 173 (220)
T 1t6n_A 94 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 173 (220)
T ss_dssp HHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSS
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcc
Confidence 9999999999998766 788999999988776655544 3569999999999998888777789999999999999876
Q ss_pred CCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEE
Q 011065 277 PEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVIN 322 (494)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~ 322 (494)
.+|...+..++..++.+.|++++|||++..+.++...++.+|..+.
T Consensus 174 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 174 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred cCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 4788888899999988999999999999999999999999987654
No 65
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1.1e-33 Score=257.47 Aligned_cols=201 Identities=38% Similarity=0.670 Sum_probs=181.9
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcC---CCceEEEEEcCc
Q 011065 121 EFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD---NNVIQVVILVPT 197 (494)
Q Consensus 121 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~---~~~~~~lil~P~ 197 (494)
+|+++++++.+++.+.+.||..|+++|.++++.+++++++++.+|||||||++|++|++..+... ..+.++||++|+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 58999999999999999999999999999999999999999999999999999999999988642 345689999999
Q ss_pred HHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCC
Q 011065 198 RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSP 277 (494)
Q Consensus 198 ~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~ 277 (494)
++|+.|+.+.+.++... +.+..++|+.....+...+..+++|+|+||+++.+++......+.++++||+||||++.+.
T Consensus 82 ~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~ 159 (207)
T 2gxq_A 82 RELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSM 159 (207)
T ss_dssp HHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhcc
Confidence 99999999999988754 6678888988877776666678999999999999988877777899999999999999888
Q ss_pred CcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEe
Q 011065 278 EFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINL 323 (494)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~ 323 (494)
+|...+..++..++.+.+++++|||++..+.++...++.+|..+.+
T Consensus 160 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 160 GFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp TCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred chHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 9999999999999989999999999999999999999999977654
No 66
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.3e-34 Score=268.36 Aligned_cols=201 Identities=39% Similarity=0.539 Sum_probs=178.4
Q ss_pred CcccccC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCC----CceEEEE
Q 011065 120 NEFEDYF--LKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN----NVIQVVI 193 (494)
Q Consensus 120 ~~~~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~----~~~~~li 193 (494)
..|++++ +++.+++.+.+.||..|+++|.++++.++.++++++++|||||||++|++|++..+.... .+.++||
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~li 131 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLI 131 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEE
Confidence 3466666 999999999999999999999999999999999999999999999999999998876521 3457999
Q ss_pred EcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcC-CccccccceEEecccc
Q 011065 194 LVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG-VCILKDCSMLVMDEAD 272 (494)
Q Consensus 194 l~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~-~~~l~~~~~iViDEah 272 (494)
++|+++|+.|+.+.++++....+..+..++|+.........+..+++|+|+||+++..++... ...+.++++||+||||
T Consensus 132 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah 211 (262)
T 3ly5_A 132 LSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD 211 (262)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH
T ss_pred EeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH
Confidence 999999999999999999988899999999999988877777778999999999999877664 3568899999999999
Q ss_pred cccCCCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeE
Q 011065 273 KLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYV 320 (494)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~ 320 (494)
++.+.+|...+..++..++..+|+++||||++..+.++...++.++.+
T Consensus 212 ~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~~ 259 (262)
T 3ly5_A 212 RILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPL 259 (262)
T ss_dssp HHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCCE
T ss_pred HHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCCe
Confidence 999999999999999999999999999999999999999998876543
No 67
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=2.7e-32 Score=278.40 Aligned_cols=316 Identities=19% Similarity=0.200 Sum_probs=234.1
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcE
Q 011065 139 GFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQ 218 (494)
Q Consensus 139 ~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~ 218 (494)
|. .|+++|.-..-.+..|+ |+.+.||+|||+++.+|++-....+ ..|.|++|++.||.+-++++..+...+|++
T Consensus 73 g~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G---~~vhVvT~ndyLA~rdae~m~~l~~~Lgls 146 (822)
T 3jux_A 73 GM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIG---KGVHLVTVNDYLARRDALWMGPVYLFLGLR 146 (822)
T ss_dssp SC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTS---SCEEEEESSHHHHHHHHHHHHHHHHHTTCC
T ss_pred CC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcC---CceEEEeccHHHHHhHHHHHHHHHHHhCCE
Confidence 44 68999999988888887 9999999999999999997544432 368999999999999999999999999999
Q ss_pred EEEEECCC--------------------------------------------------ChHHHHHHhcCCCeEEEEchHH
Q 011065 219 VMVTTGGT--------------------------------------------------SLKDDIMRLYQPVHLLVGTPGR 248 (494)
Q Consensus 219 ~~~~~g~~--------------------------------------------------~~~~~~~~~~~~~~Ilv~T~~~ 248 (494)
++++.... ...+.... -.++|+|+|..-
T Consensus 147 vg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~a--Y~~DItYgTn~E 224 (822)
T 3jux_A 147 VGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEA--YLCDVTYGTNNE 224 (822)
T ss_dssp EEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHH--HHSSEEEEEHHH
T ss_pred EEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHH--hcCCCEEccCcc
Confidence 99988721 00011111 147999999886
Q ss_pred H-HHhHhc------CCccccccceEEecccccccCC-------------CcHHH--------------------------
Q 011065 249 I-LDLSKK------GVCILKDCSMLVMDEADKLLSP-------------EFQPS-------------------------- 282 (494)
Q Consensus 249 l-~~~~~~------~~~~l~~~~~iViDEah~~~~~-------------~~~~~-------------------------- 282 (494)
| .+.|+. .......+.+.|+||+|.++=+ .-...
T Consensus 225 fgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~v 304 (822)
T 3jux_A 225 FGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKARTI 304 (822)
T ss_dssp HHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSCE
T ss_pred hhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCeE
Confidence 5 233332 1223567899999999986400 00000
Q ss_pred ---------HHH------------------H---HH---HC---------------------------------------
Q 011065 283 ---------VEQ------------------L---IR---FL--------------------------------------- 290 (494)
Q Consensus 283 ---------~~~------------------~---~~---~~--------------------------------------- 290 (494)
++. + ++ .+
T Consensus 305 ~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEa 384 (822)
T 3jux_A 305 ILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIEA 384 (822)
T ss_dssp EECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHHH
T ss_pred EECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHHH
Confidence 000 0 00 00
Q ss_pred ----------------------CCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeE-EEEeehhhhHHHH
Q 011065 291 ----------------------PANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQ-YYAFVEERQKVHC 347 (494)
Q Consensus 291 ----------------------~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~~~ 347 (494)
.--.++.+||+|+.....++...|.- .++.++...+...... ...+.....|...
T Consensus 385 KEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l--~vv~IPtnkp~~R~d~~d~vy~t~~eK~~a 462 (822)
T 3jux_A 385 KEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGM--EVVVIPTHKPMIRKDHDDLVFRTQKEKYEK 462 (822)
T ss_dssp HHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCC--CEEECCCSSCCCCEECCCEEESSHHHHHHH
T ss_pred HcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCC--eEEEECCCCCcceeecCcEEEecHHHHHHH
Confidence 00137899999998877777666533 3444443333222222 2345566778888
Q ss_pred HHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCC-
Q 011065 348 LNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQ- 424 (494)
Q Consensus 348 l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~- 424 (494)
+...+... ...++||||++++.++.+++.|.+.|+.+..+||+..+.++..+...++.| .|+|||++++||+||+
T Consensus 463 l~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~l 540 (822)
T 3jux_A 463 IVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKL 540 (822)
T ss_dssp HHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCC
T ss_pred HHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccC
Confidence 87777653 467999999999999999999999999999999996666666666666666 5999999999999998
Q ss_pred -------CCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccch
Q 011065 425 -------AVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDR 466 (494)
Q Consensus 425 -------~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~ 466 (494)
+..+||+++.|.|...|+||+||+||.|.+|.++.|++.+|.
T Consensus 541 g~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 541 GPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp CTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred CcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 667999999999999999999999999999999999998773
No 68
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=6.2e-34 Score=267.51 Aligned_cols=207 Identities=34% Similarity=0.580 Sum_probs=186.8
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCC---------Cc
Q 011065 118 KGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN---------NV 188 (494)
Q Consensus 118 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~---------~~ 188 (494)
...+|+++++++.+++.+.+.||..|+++|.++++.+++++++++++|||||||++|++|++..+.... .+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 345699999999999999999999999999999999999999999999999999999999999876432 23
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEe
Q 011065 189 IQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVM 268 (494)
Q Consensus 189 ~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iVi 268 (494)
+++||++|+++|+.|+.+.++++....++.+..++|+.....+...+..+++|+|+||++|.+++......+.++++||+
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 58999999999999999999999888889999999999888887787788999999999999998887777899999999
Q ss_pred cccccccCCCcHHHHHHHHHHC--CC--CCcEEEEEeecCcchHHHHHhhcCCCeEEEec
Q 011065 269 DEADKLLSPEFQPSVEQLIRFL--PA--NRQILMFSATFPVTVKDFKDKYLQKPYVINLM 324 (494)
Q Consensus 269 DEah~~~~~~~~~~~~~~~~~~--~~--~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~ 324 (494)
||||++.+.+|...+..++..+ +. +.|++++|||++..+.++...++.+|..+.+.
T Consensus 181 DEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 240 (253)
T 1wrb_A 181 DEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 240 (253)
T ss_dssp ETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC
T ss_pred eCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEEC
Confidence 9999999999999999999853 43 67899999999999999999999998777664
No 69
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=7.4e-33 Score=286.26 Aligned_cols=307 Identities=15% Similarity=0.196 Sum_probs=214.0
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011065 142 RPSPIQEESIPIAL----TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI 217 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~----~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (494)
.|+|+|.++++.+. .+++++++++||+|||++++..+.. +...+...++|||||+ .|+.||.+.++++.. +.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~-~~~~~~~~~~LIv~P~-~l~~qw~~e~~~~~~--~~ 112 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSD-AKKENELTPSLVICPL-SVLKNWEEELSKFAP--HL 112 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHH-HHHTTCCSSEEEEECS-TTHHHHHHHHHHHCT--TS
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHH-HHhcCCCCCEEEEccH-HHHHHHHHHHHHHCC--Cc
Confidence 79999999998774 5678999999999999996554444 4433444589999995 588999999998864 34
Q ss_pred EEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEE
Q 011065 218 QVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQIL 297 (494)
Q Consensus 218 ~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i 297 (494)
.+..+.|+... ......+|+|+|++.+..... .....+++||+||||++.+... .....+..++ ....+
T Consensus 113 ~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~l~-~~~~l 181 (500)
T 1z63_A 113 RFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKELK-SKYRI 181 (500)
T ss_dssp CEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTS--HHHHHHHTSC-EEEEE
T ss_pred eEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHhH--HHHHHHHhhc-cCcEE
Confidence 56666655422 112457899999999865433 2245689999999999876542 2344555554 45679
Q ss_pred EEEeecCcc-hHHHH------------------------------------HhhcCCCeEEEec-cc----ccccceeEE
Q 011065 298 MFSATFPVT-VKDFK------------------------------------DKYLQKPYVINLM-DE----LTLKGITQY 335 (494)
Q Consensus 298 ~~SATl~~~-~~~~~------------------------------------~~~~~~~~~~~~~-~~----~~~~~~~~~ 335 (494)
++|||+... ..++. ...+ .+..+... .+ ...+.....
T Consensus 182 ~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~lp~~~~~ 260 (500)
T 1z63_A 182 ALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIINDLPDKIET 260 (500)
T ss_dssp EECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTTSCSEEEE
T ss_pred EEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhcCCCCeEE
Confidence 999997322 11111 1111 12221100 00 000111111
Q ss_pred EEee---------------------------------------------------------hhhhHHHHHHHHHHhc--C
Q 011065 336 YAFV---------------------------------------------------------EERQKVHCLNTLFSKL--Q 356 (494)
Q Consensus 336 ~~~~---------------------------------------------------------~~~~k~~~l~~ll~~~--~ 356 (494)
...+ ....|...+..++... .
T Consensus 261 ~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~ 340 (500)
T 1z63_A 261 NVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDE 340 (500)
T ss_dssp EEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTT
T ss_pred EEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHcc
Confidence 1111 1123444555555543 5
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc-CCcEEEEccCCCHHHHHHHHHHhhcC-Ccc-EEEEcCcccccCCCCCCCEEEEcC
Q 011065 357 INQSIIFCNSVNRVELLAKKITEL-GYSCFYIHAKMLQDHRNRVFHDFRNG-ACR-NLVCTDLFTRGIDIQAVNVVINFD 433 (494)
Q Consensus 357 ~~~~lVF~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~i~~~f~~g-~~~-vlvaT~~~~~Gidi~~v~~VI~~~ 433 (494)
..++||||.+...++.+++.|... ++.+..+||+++..+|.++++.|+++ ..+ +|++|+++++|+|++++++||++|
T Consensus 341 ~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d 420 (500)
T 1z63_A 341 GDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFD 420 (500)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESS
T ss_pred CCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeC
Confidence 679999999999999999999985 99999999999999999999999988 454 789999999999999999999999
Q ss_pred CCCCHHHHHHHhccccCCCCcceE--EEEeccc
Q 011065 434 FPKNSETYLHRVGRSGRFGHLGLA--VNLITYE 464 (494)
Q Consensus 434 ~p~s~~~~~Qr~GRagR~g~~g~~--~~l~~~~ 464 (494)
+|+++..|.|++||++|.|+...| |.|++..
T Consensus 421 ~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 421 RWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp CCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred CCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 999999999999999999987655 6666655
No 70
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.3e-32 Score=255.62 Aligned_cols=206 Identities=29% Similarity=0.455 Sum_probs=173.9
Q ss_pred CCccccc----CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcC-CCceEEEE
Q 011065 119 GNEFEDY----FLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD-NNVIQVVI 193 (494)
Q Consensus 119 ~~~~~~~----~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~-~~~~~~li 193 (494)
..+|+++ ++++.+++.+.+.||..|+++|.++++.+++++++++.+|||||||++|++|++..+... ..+.++||
T Consensus 24 ~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~li 103 (245)
T 3dkp_A 24 IATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALI 103 (245)
T ss_dssp CSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEE
T ss_pred ccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEE
Confidence 3456665 899999999999999999999999999999999999999999999999999999988643 34568999
Q ss_pred EcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHH-HHhcCCCeEEEEchHHHHHhHhcC--CccccccceEEecc
Q 011065 194 LVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDI-MRLYQPVHLLVGTPGRILDLSKKG--VCILKDCSMLVMDE 270 (494)
Q Consensus 194 l~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~Ilv~T~~~l~~~~~~~--~~~l~~~~~iViDE 270 (494)
++|+++|+.|+.+.+.++....++.+..+.|+....... .....+++|+|+||++|..++... ...+.++++||+||
T Consensus 104 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDE 183 (245)
T 3dkp_A 104 ISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDE 183 (245)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESS
T ss_pred EeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeC
Confidence 999999999999999999888888887766554332211 122356799999999999988775 45688999999999
Q ss_pred cccccC---CCcHHHHHHHHHHC-CCCCcEEEEEeecCcchHHHHHhhcCCCeEEEec
Q 011065 271 ADKLLS---PEFQPSVEQLIRFL-PANRQILMFSATFPVTVKDFKDKYLQKPYVINLM 324 (494)
Q Consensus 271 ah~~~~---~~~~~~~~~~~~~~-~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~ 324 (494)
||++.+ .+|...+..++..+ +.+.++++||||++.++.++...++.+|..+.+.
T Consensus 184 ah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~ 241 (245)
T 3dkp_A 184 SDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIG 241 (245)
T ss_dssp HHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEEC
T ss_pred hHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeC
Confidence 999877 57888888888776 4578999999999999999999999999887764
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=1.4e-31 Score=292.07 Aligned_cols=309 Identities=14% Similarity=0.139 Sum_probs=211.1
Q ss_pred CCcHHHHHHHHHHhc--------------CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHH
Q 011065 142 RPSPIQEESIPIALT--------------GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQV 207 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~--------------~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~ 207 (494)
.|+++|.+|++.++. +++++++++||||||+++ ++++..+...+...++|||||+++|+.|+.+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 599999999999875 367999999999999997 55665555444445999999999999999999
Q ss_pred HHHHhccCCcEEEEEECCCChHHHHHHh-cCCCeEEEEchHHHHHhHhcCC--ccccccceEEecccccccCCCcHHHHH
Q 011065 208 CKELGKHLNIQVMVTTGGTSLKDDIMRL-YQPVHLLVGTPGRILDLSKKGV--CILKDCSMLVMDEADKLLSPEFQPSVE 284 (494)
Q Consensus 208 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~Ilv~T~~~l~~~~~~~~--~~l~~~~~iViDEah~~~~~~~~~~~~ 284 (494)
+..+.... +.++.+.......+ ....+|+|+|+++|..++.... ..+..+.+||+||||++. +...+.
T Consensus 350 f~~f~~~~------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~---~~~~~~ 420 (1038)
T 2w00_A 350 YQRFSPDS------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQ---FGEAQK 420 (1038)
T ss_dssp HHTTSTTC------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTH---HHHHHH
T ss_pred HHHhcccc------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhc---chHHHH
Confidence 88876421 22444444444444 3568999999999998765432 245678999999999964 234466
Q ss_pred HHHHHCCCCCcEEEEEeecCcchH----HHHHhhcCCCeEEE-ec----ccccccceeEEEEe-----------------
Q 011065 285 QLIRFLPANRQILMFSATFPVTVK----DFKDKYLQKPYVIN-LM----DELTLKGITQYYAF----------------- 338 (494)
Q Consensus 285 ~~~~~~~~~~~~i~~SATl~~~~~----~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~----------------- 338 (494)
.+...++ +.++++||||+..... .....+++++.... +. +.... .+...+..
T Consensus 421 ~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~-p~~v~y~~v~~~~~~~~~e~d~~~~ 498 (1038)
T 2w00_A 421 NLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVL-KFKVDYNDVRPQFKSLETETDEKKL 498 (1038)
T ss_dssp HHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSC-CEEEEECCCCGGGHHHHTCCCHHHH
T ss_pred HHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcC-CeEEEEEeccchhhhccccccHHHH
Confidence 6777775 5789999999764321 11112222221110 00 00000 00000000
Q ss_pred --------ehhhhHHHHH-HHHHHhc-----------CCCcEEEEecChhHHHHHHHHHHHcC------------CcEE-
Q 011065 339 --------VEERQKVHCL-NTLFSKL-----------QINQSIIFCNSVNRVELLAKKITELG------------YSCF- 385 (494)
Q Consensus 339 --------~~~~~k~~~l-~~ll~~~-----------~~~~~lVF~~~~~~~~~l~~~L~~~~------------~~~~- 385 (494)
.....+...+ ..++.+. ...++||||+++..|..+++.|.+.+ +.+.
T Consensus 499 ~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~av 578 (1038)
T 2w00_A 499 SAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIAT 578 (1038)
T ss_dssp HHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEE
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEE
Confidence 0011122222 2233321 23579999999999999999998754 4554
Q ss_pred EEccC----------C----------CH-----------------------------HHHHHHHHHhhcCCccEEEEcCc
Q 011065 386 YIHAK----------M----------LQ-----------------------------DHRNRVFHDFRNGACRNLVCTDL 416 (494)
Q Consensus 386 ~~~~~----------~----------~~-----------------------------~~r~~i~~~f~~g~~~vlvaT~~ 416 (494)
.+|+. + ++ ..|..++++|++|..+|||+|++
T Consensus 579 v~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~ 658 (1038)
T 2w00_A 579 IFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGM 658 (1038)
T ss_dssp ECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESST
T ss_pred EEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcch
Confidence 44532 2 22 13788999999999999999999
Q ss_pred ccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCc----ceEEEEecc
Q 011065 417 FTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHL----GLAVNLITY 463 (494)
Q Consensus 417 ~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~----g~~~~l~~~ 463 (494)
+.+|+|+|.+ .|+++|.|.+...|+|++||++|.+.. |.++.|++.
T Consensus 659 lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 659 FLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp TSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred HHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 9999999999 778899999999999999999998753 667777664
No 72
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=5.3e-30 Score=271.09 Aligned_cols=316 Identities=15% Similarity=0.186 Sum_probs=217.1
Q ss_pred CCcHHHHHHHHHHh---------cCCcEEEEccCCCchhHHhHHHHHHhhhcCC----CceEEEEEcCcHHHHHHHHHHH
Q 011065 142 RPSPIQEESIPIAL---------TGSDILARAKNGTGKTAAFCIPALEKIDQDN----NVIQVVILVPTRELALQTSQVC 208 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~---------~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~----~~~~~lil~P~~~la~q~~~~~ 208 (494)
.++|+|.+++..+. .+..+|+..+||+|||++++..+...+.... ...++|||||+ .|+.||.+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 68999999999875 3456999999999999997776666554332 22368999997 7888999999
Q ss_pred HHHhccCCcEEEEEECCCChHH--HHHHhc------CCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcH
Q 011065 209 KELGKHLNIQVMVTTGGTSLKD--DIMRLY------QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQ 280 (494)
Q Consensus 209 ~~~~~~~~~~~~~~~g~~~~~~--~~~~~~------~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~ 280 (494)
.++... .+.+..+.++..... ...... ...+|+|+|++.+..... ......+++||+||||++.+.. .
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~~-~ 209 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSD-N 209 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTC-H
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCChh-h
Confidence 888754 455566666543321 111111 146899999999876433 2234578999999999986643 2
Q ss_pred HHHHHHHHHCCCCCcEEEEEeecCcc-h------------------HHHHHhhc--------------------------
Q 011065 281 PSVEQLIRFLPANRQILMFSATFPVT-V------------------KDFKDKYL-------------------------- 315 (494)
Q Consensus 281 ~~~~~~~~~~~~~~~~i~~SATl~~~-~------------------~~~~~~~~-------------------------- 315 (494)
.. ...+..+. ....+++|||+-.+ + ..|...|.
T Consensus 210 ~~-~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L 287 (644)
T 1z3i_X 210 QT-YLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQEL 287 (644)
T ss_dssp HH-HHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHH
T ss_pred HH-HHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHH
Confidence 22 33344443 45679999996211 0 01111000
Q ss_pred ---CCCeEEEec-ccc--cccceeEEEE----------------------------------------------------
Q 011065 316 ---QKPYVINLM-DEL--TLKGITQYYA---------------------------------------------------- 337 (494)
Q Consensus 316 ---~~~~~~~~~-~~~--~~~~~~~~~~---------------------------------------------------- 337 (494)
-.++++.-. ... ..+.......
T Consensus 288 ~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~ 367 (644)
T 1z3i_X 288 ISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIY 367 (644)
T ss_dssp HHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHH
T ss_pred HHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHHH
Confidence 000000000 000 0000000000
Q ss_pred --------------------------eehhhhHHHHHHHHHHhc---CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEc
Q 011065 338 --------------------------FVEERQKVHCLNTLFSKL---QINQSIIFCNSVNRVELLAKKITELGYSCFYIH 388 (494)
Q Consensus 338 --------------------------~~~~~~k~~~l~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~ 388 (494)
......|...+..++... ...++||||.....++.+.+.|...++.+..+|
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~ 447 (644)
T 1z3i_X 368 EKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLD 447 (644)
T ss_dssp HHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred HHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEe
Confidence 001123444555555432 467999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHhhcCCc---cEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcc--eEEEEecc
Q 011065 389 AKMLQDHRNRVFHDFRNGAC---RNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLG--LAVNLITY 463 (494)
Q Consensus 389 ~~~~~~~r~~i~~~f~~g~~---~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g--~~~~l~~~ 463 (494)
|+++..+|..+++.|+++.. .+|++|.++++|||++++++||++|+|+++..+.|++||++|.|+.. .+|.|++.
T Consensus 448 G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~ 527 (644)
T 1z3i_X 448 GTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLST 527 (644)
T ss_dssp SSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEET
T ss_pred CCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEEC
Confidence 99999999999999999865 38999999999999999999999999999999999999999999865 45667776
Q ss_pred c
Q 011065 464 E 464 (494)
Q Consensus 464 ~ 464 (494)
.
T Consensus 528 ~ 528 (644)
T 1z3i_X 528 G 528 (644)
T ss_dssp T
T ss_pred C
Confidence 5
No 73
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.3e-30 Score=280.58 Aligned_cols=327 Identities=17% Similarity=0.210 Sum_probs=228.8
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011065 142 RPSPIQEESIPIAL----TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI 217 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~----~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (494)
.++|+|.++++.+. .++++|++.+||+|||++++..+...+........+||||| ..++.||.+.+.++.. ++
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p--~~ 312 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAP--DL 312 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHST--TC
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCC--Cc
Confidence 78999999998776 67889999999999999976666555443333447899999 5778889998888864 46
Q ss_pred EEEEEECCCChHHHHHH------------hcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHH
Q 011065 218 QVMVTTGGTSLKDDIMR------------LYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQ 285 (494)
Q Consensus 218 ~~~~~~g~~~~~~~~~~------------~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~ 285 (494)
.+....|.......... .....+|+|+|++.+...... +....+++||+||||++.+.. .....
T Consensus 313 ~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~--s~~~~ 388 (800)
T 3mwy_W 313 NCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE--SSLYE 388 (800)
T ss_dssp CEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS--SHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch--hHHHH
Confidence 67777776655544332 123578999999999764332 122368999999999986533 23344
Q ss_pred HHHHCCCCCcEEEEEeecC-cchHHHH---Hhhc-----------------------------CCCeEEEec-cccc--c
Q 011065 286 LIRFLPANRQILMFSATFP-VTVKDFK---DKYL-----------------------------QKPYVINLM-DELT--L 329 (494)
Q Consensus 286 ~~~~~~~~~~~i~~SATl~-~~~~~~~---~~~~-----------------------------~~~~~~~~~-~~~~--~ 329 (494)
.+..++ ....+++|||+- ..+.++. .... -.|.++... .... .
T Consensus 389 ~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~L 467 (800)
T 3mwy_W 389 SLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSL 467 (800)
T ss_dssp HHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTS
T ss_pred HHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhcc
Confidence 455553 345688999962 1111111 1100 011111100 0000 0
Q ss_pred cceeEEEEe-----------------------------------------------------------------------
Q 011065 330 KGITQYYAF----------------------------------------------------------------------- 338 (494)
Q Consensus 330 ~~~~~~~~~----------------------------------------------------------------------- 338 (494)
+........
T Consensus 468 P~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~ 547 (800)
T 3mwy_W 468 PSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENV 547 (800)
T ss_dssp CCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHH
T ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHH
Confidence 000000000
Q ss_pred ----ehhhhHHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCc---c
Q 011065 339 ----VEERQKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGAC---R 409 (494)
Q Consensus 339 ----~~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~---~ 409 (494)
.....|+..|..++... ...++||||.....++.+.+.|...++.+..+||+++..+|..+++.|+++.. .
T Consensus 548 ~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v 627 (800)
T 3mwy_W 548 LRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFV 627 (800)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCC
T ss_pred HHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceE
Confidence 01133566677777665 45699999999999999999999999999999999999999999999998544 4
Q ss_pred EEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCc--ceEEEEeccc--chHHHHHHHHHh
Q 011065 410 NLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHL--GLAVNLITYE--DRFNLYRIEQEL 476 (494)
Q Consensus 410 vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~--g~~~~l~~~~--~~~~~~~l~~~~ 476 (494)
+|++|.++++|||++.+++||++|+|+++..+.|++||++|.|+. ..+|.|++.. |...+......+
T Consensus 628 ~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~ 698 (800)
T 3mwy_W 628 FLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKM 698 (800)
T ss_dssp EEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHT
T ss_pred EEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999986 4457777765 444455444444
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=5.1e-28 Score=251.34 Aligned_cols=130 Identities=18% Similarity=0.181 Sum_probs=110.9
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011065 138 KGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI 217 (494)
Q Consensus 138 ~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (494)
.|+ .|+++|..+++.++.|+ |+.+.||+|||++|.+|++..... +..++|++||++||.|.++++..+...+++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~---G~qv~VvTPTreLA~Qdae~m~~l~~~lGL 149 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT---GKGVHVVTVNDYLARRDAEWMGPVYRGLGL 149 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT---CSCCEEEESSHHHHHHHHHHHHHHHHTTTC
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh---CCCEEEEeCCHHHHHHHHHHHHHHHHhcCC
Confidence 588 99999999999999998 999999999999999999644332 236899999999999999999999999999
Q ss_pred EEEEEECCCChHHHHHHhcCCCeEEEEchHHH-HHhHhcCC------cccc---ccceEEeccccccc
Q 011065 218 QVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRI-LDLSKKGV------CILK---DCSMLVMDEADKLL 275 (494)
Q Consensus 218 ~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~~------~~l~---~~~~iViDEah~~~ 275 (494)
++++++|+.+...... ...++|+|+||+.| ++++.... ..+. .+.++|+||+|+|+
T Consensus 150 sv~~i~Gg~~~~~r~~--ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 150 SVGVIQHASTPAERRK--AYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp CEEECCTTCCHHHHHH--HHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred eEEEEeCCCCHHHHHH--HcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 9999999987543333 34689999999999 77776542 4467 89999999999876
No 75
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.96 E-value=1.7e-28 Score=213.98 Aligned_cols=158 Identities=37% Similarity=0.654 Sum_probs=150.2
Q ss_pred ccccceeEEEEeehhhhHHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcC
Q 011065 327 LTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNG 406 (494)
Q Consensus 327 ~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g 406 (494)
....++.+++..++...|...|..++.....+++||||+++..++.+++.|.+.++.+..+||+|++.+|..+++.|++|
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 34567888888899999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCccCC
Q 011065 407 ACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIP 484 (494)
Q Consensus 407 ~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~~~ 484 (494)
..+|||||+++++|+|+|++++||++++|++..+|+||+||+||.|++|.|++|+++.+...+..+++.++.++++++
T Consensus 85 ~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEECC
T ss_pred CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987765
No 76
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=1e-28 Score=217.18 Aligned_cols=162 Identities=38% Similarity=0.664 Sum_probs=148.0
Q ss_pred ccceeEEEEeehhhhHHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCc
Q 011065 329 LKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGAC 408 (494)
Q Consensus 329 ~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~ 408 (494)
...+.+++..++...|...|..++.....+++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|..
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 34678888888889999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEeccc-chHHHHHHHHHhCCCCccCCcch
Q 011065 409 RNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYE-DRFNLYRIEQELGTEIKQIPPHI 487 (494)
Q Consensus 409 ~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~-~~~~~~~l~~~~~~~~~~~~~~~ 487 (494)
+|||||+++++|+|+|++++||++++|++..+|+||+||+||.|++|.|+.|+++. +...+..+++.++.+++++|.++
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 162 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC---
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhh
Confidence 99999999999999999999999999999999999999999999999999999975 56788999999999999999887
Q ss_pred hhh
Q 011065 488 DQA 490 (494)
Q Consensus 488 ~~~ 490 (494)
+..
T Consensus 163 ~~~ 165 (172)
T 1t5i_A 163 DIS 165 (172)
T ss_dssp ---
T ss_pred chh
Confidence 764
No 77
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=2.8e-28 Score=215.28 Aligned_cols=163 Identities=34% Similarity=0.669 Sum_probs=148.4
Q ss_pred cccceeEEEEeehhhh-HHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcC
Q 011065 328 TLKGITQYYAFVEERQ-KVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNG 406 (494)
Q Consensus 328 ~~~~~~~~~~~~~~~~-k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g 406 (494)
...++.+++..++... |...|..++.....+++||||+++..++.++..|.+.++.+..+||++++.+|..+++.|++|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 4567888888887655 999999999988888999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEcCcccccCCCCCCCEEEEcCCC------CCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCC
Q 011065 407 ACRNLVCTDLFTRGIDIQAVNVVINFDFP------KNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEI 480 (494)
Q Consensus 407 ~~~vlvaT~~~~~Gidi~~v~~VI~~~~p------~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~ 480 (494)
..+|||||+++++|+|+|++++||++++| .+..+|+||+||+||.|++|.|+.|+++.+...+..+++.++..+
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 163 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSI 163 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCC
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccCCcchhhh
Q 011065 481 KQIPPHIDQA 490 (494)
Q Consensus 481 ~~~~~~~~~~ 490 (494)
+++|..-.+.
T Consensus 164 ~~~~~~~~~~ 173 (175)
T 2rb4_A 164 KQLNAEDMDE 173 (175)
T ss_dssp EEECSSCCC-
T ss_pred cccCCchhcc
Confidence 9988765543
No 78
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.96 E-value=2.1e-28 Score=213.91 Aligned_cols=159 Identities=40% Similarity=0.776 Sum_probs=145.4
Q ss_pred ceeEEEEeehhhh-HHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCcc
Q 011065 331 GITQYYAFVEERQ-KVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR 409 (494)
Q Consensus 331 ~~~~~~~~~~~~~-k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~ 409 (494)
++.+++..++... |...|..++.....+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|..+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 5667777777666 999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCccCCcchhh
Q 011065 410 NLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQ 489 (494)
Q Consensus 410 vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 489 (494)
|||||+++++|+|+|++++||++++|++..+|.||+||+||.|++|.|++|+++.+...+..+++.++..++++|.++.+
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIAT 162 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCCTT
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCccHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987654
No 79
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.96 E-value=9.4e-28 Score=218.39 Aligned_cols=154 Identities=29% Similarity=0.512 Sum_probs=143.5
Q ss_pred eEEEEeehhhhHHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEE
Q 011065 333 TQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLV 412 (494)
Q Consensus 333 ~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlv 412 (494)
.+.....+...|...|..++.....+++||||+++..++.+++.|...++.+.++||++++.+|..+++.|++|..+|||
T Consensus 7 ~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlv 86 (212)
T 3eaq_A 7 EEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLV 86 (212)
T ss_dssp CCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEE
T ss_pred eeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEE
Confidence 34455566788999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred EcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCccCCcc
Q 011065 413 CTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPH 486 (494)
Q Consensus 413 aT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 486 (494)
||+++++|+|+|++++||++++|.+..+|+||+||+||.|++|.|++|+++.+...+..+++.++..++.++..
T Consensus 87 aT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 160 (212)
T 3eaq_A 87 ATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPP 160 (212)
T ss_dssp ECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCC
T ss_pred ecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887753
No 80
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.96 E-value=5.5e-28 Score=215.81 Aligned_cols=178 Identities=25% Similarity=0.393 Sum_probs=145.8
Q ss_pred HHhhcCCCeEEEecc-cccccceeEEEEeehhhhHHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEcc
Q 011065 311 KDKYLQKPYVINLMD-ELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHA 389 (494)
Q Consensus 311 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~ 389 (494)
.+.++.+|..+.+.. .....++.+.+..++...|...|..++... .+++||||+++..++.+++.|...++.+..+||
T Consensus 8 ~~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg 86 (191)
T 2p6n_A 8 SSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHG 86 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECT
T ss_pred cccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 345677776666542 344567888888888899999999998765 468999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEeccc-chHH
Q 011065 390 KMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYE-DRFN 468 (494)
Q Consensus 390 ~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~-~~~~ 468 (494)
++++.+|..+++.|++|..+|||||+++++|+|+|++++||++++|.+..+|+||+||+||.|++|.|++|+++. +...
T Consensus 87 ~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~ 166 (191)
T 2p6n_A 87 GKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESV 166 (191)
T ss_dssp TSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999976 7788
Q ss_pred HHHHHHHhCCCCccCCcchhh
Q 011065 469 LYRIEQELGTEIKQIPPHIDQ 489 (494)
Q Consensus 469 ~~~l~~~~~~~~~~~~~~~~~ 489 (494)
+..+++.++....++|+.+.+
T Consensus 167 ~~~l~~~l~~~~~~~p~~l~~ 187 (191)
T 2p6n_A 167 LMDLKALLLEAKQKVPPVLQV 187 (191)
T ss_dssp HHHHHHHHHHTTCCCCHHHHS
T ss_pred HHHHHHHHHHccCcCCHHHHh
Confidence 889999998888889987654
No 81
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.95 E-value=6.9e-28 Score=214.27 Aligned_cols=163 Identities=32% Similarity=0.526 Sum_probs=140.3
Q ss_pred cccceeEEEEeehhhhHHHHHHHHHHhc-CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcC
Q 011065 328 TLKGITQYYAFVEERQKVHCLNTLFSKL-QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNG 406 (494)
Q Consensus 328 ~~~~~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g 406 (494)
...++.+.+..++...|...|..++... ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|
T Consensus 16 ~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g 95 (185)
T 2jgn_A 16 TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 95 (185)
T ss_dssp CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT
T ss_pred CCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 4567888999999999999999999887 467999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCccCCcc
Q 011065 407 ACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPH 486 (494)
Q Consensus 407 ~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 486 (494)
..+|||||+++++|+|+|++++||++|+|++..+|+||+||+||.|++|.|++|+++.+...+..+++.++....++|.+
T Consensus 96 ~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 175 (185)
T 2jgn_A 96 KSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSW 175 (185)
T ss_dssp SSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHH
T ss_pred CCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhh
Q 011065 487 IDQA 490 (494)
Q Consensus 487 ~~~~ 490 (494)
+.+.
T Consensus 176 l~~~ 179 (185)
T 2jgn_A 176 LENM 179 (185)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 82
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.95 E-value=6.5e-27 Score=247.20 Aligned_cols=114 Identities=21% Similarity=0.287 Sum_probs=106.6
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCC-
Q 011065 356 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF- 434 (494)
Q Consensus 356 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~- 434 (494)
...++||||+++..++.+++.|.+.++.+..+||++++.+|..+++.|++|..+|||||+++++|+|+|++++||+++.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d 517 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDAD 517 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCc
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCCHHHHHHHhccccCCCCcceEEEEecccchHHHH
Q 011065 435 ----PKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLY 470 (494)
Q Consensus 435 ----p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~ 470 (494)
|.|..+|+||+|||||.+ +|.|+.|+++.+.....
T Consensus 518 ~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~ 556 (664)
T 1c4o_A 518 KEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQR 556 (664)
T ss_dssp SCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHH
T ss_pred ccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHH
Confidence 899999999999999996 89999999986554333
No 83
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=3.9e-27 Score=224.21 Aligned_cols=155 Identities=30% Similarity=0.508 Sum_probs=142.9
Q ss_pred eeEEEEeehhhhHHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEE
Q 011065 332 ITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNL 411 (494)
Q Consensus 332 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vl 411 (494)
+.+++..++...|...|..++.....+++||||++++.++.+++.|...++.+.++||+|++.+|..+++.|++|..+||
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vL 82 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVL 82 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEE
Confidence 45677778888899999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCccCCcc
Q 011065 412 VCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPH 486 (494)
Q Consensus 412 vaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 486 (494)
|||+++++|+|+|++++||++++|.+..+|+||+||+||.|++|.|++|+++.+...+..+++.++..++.++..
T Consensus 83 VaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~ 157 (300)
T 3i32_A 83 VATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPP 157 (300)
T ss_dssp EECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCC
T ss_pred EEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887764
No 84
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=1.8e-26 Score=243.65 Aligned_cols=112 Identities=21% Similarity=0.321 Sum_probs=105.8
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCC-
Q 011065 356 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF- 434 (494)
Q Consensus 356 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~- 434 (494)
...++||||+++..++.+++.|.+.++.+..+||++++.+|..+++.|++|..+|||||+++++|+|+|++++||+++.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d 523 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDAD 523 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcc
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCCHHHHHHHhccccCCCCcceEEEEecccchHH
Q 011065 435 ----PKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFN 468 (494)
Q Consensus 435 ----p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~ 468 (494)
|.+..+|+||+|||||. .+|.|++|+++.+...
T Consensus 524 ~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~ 560 (661)
T 2d7d_A 524 KEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSM 560 (661)
T ss_dssp CCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHH
T ss_pred cccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHH
Confidence 99999999999999998 6899999999865543
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.88 E-value=1.7e-27 Score=209.14 Aligned_cols=155 Identities=34% Similarity=0.550 Sum_probs=143.1
Q ss_pred ceeEEEEeehh-hhHHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCcc
Q 011065 331 GITQYYAFVEE-RQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR 409 (494)
Q Consensus 331 ~~~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~ 409 (494)
++.+.+..++. ..|...|..++.....+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|..+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ 82 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 82 (170)
Confidence 45556666666 77888898988887778999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCccCCc
Q 011065 410 NLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPP 485 (494)
Q Consensus 410 vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 485 (494)
|||||+++++|+|+|++++||++++|++..+|+||+||+||.|++|.|++|+++.+...+..+++.++..++..+.
T Consensus 83 vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (170)
T 2yjt_D 83 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVI 158 (170)
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888876554
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.90 E-value=5e-24 Score=194.76 Aligned_cols=163 Identities=21% Similarity=0.207 Sum_probs=118.0
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcC---CCceEEEEEcCcHHHHHH-HHHHHHHHhcc
Q 011065 139 GFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD---NNVIQVVILVPTRELALQ-TSQVCKELGKH 214 (494)
Q Consensus 139 ~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~---~~~~~~lil~P~~~la~q-~~~~~~~~~~~ 214 (494)
....|+++|.++++.++.++++++.+|||+|||++++.+++..+... ..+.++||+||+++|+.| +.+.+..+...
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~ 109 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 109 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhcc
Confidence 34589999999999999999999999999999999999998776532 234589999999999999 77788887654
Q ss_pred CCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCC------ccccccceEEecccccccCCCcHHHH-HHHH
Q 011065 215 LNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGV------CILKDCSMLVMDEADKLLSPEFQPSV-EQLI 287 (494)
Q Consensus 215 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~------~~l~~~~~iViDEah~~~~~~~~~~~-~~~~ 287 (494)
++.+..+.|+.............++|+|+||++|...+.... ..+.++++||+||||++....+...+ ..++
T Consensus 110 -~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~ 188 (216)
T 3b6e_A 110 -WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 188 (216)
T ss_dssp -TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHHH
T ss_pred -CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHHH
Confidence 677888887765543333333468999999999998877642 45788999999999998776544433 3333
Q ss_pred HHC-------------CCCCcEEEEEee
Q 011065 288 RFL-------------PANRQILMFSAT 302 (494)
Q Consensus 288 ~~~-------------~~~~~~i~~SAT 302 (494)
... .+..++|+||||
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 189 MQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHhcccccccccccCCCCcceEEEeecC
Confidence 222 157899999998
No 87
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.89 E-value=4.4e-23 Score=190.97 Aligned_cols=169 Identities=17% Similarity=0.225 Sum_probs=126.7
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCC--ceEEEEEcCcHHHHHHHHHHHHHH-hccC
Q 011065 139 GFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNN--VIQVVILVPTRELALQTSQVCKEL-GKHL 215 (494)
Q Consensus 139 ~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~--~~~~lil~P~~~la~q~~~~~~~~-~~~~ 215 (494)
....++++|.++++.+..|++++++|+||||||+++.++++......+. ..++++++|+++++.|+.+.+... ....
T Consensus 58 ~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~ 137 (235)
T 3llm_A 58 ELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEP 137 (235)
T ss_dssp HTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCT
T ss_pred hcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcccc
Confidence 3446799999999999999999999999999999999999887665443 458999999999999987766543 3334
Q ss_pred CcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccc-cCCCcH-HHHHHHHHHCCCC
Q 011065 216 NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKL-LSPEFQ-PSVEQLIRFLPAN 293 (494)
Q Consensus 216 ~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~-~~~~~~-~~~~~~~~~~~~~ 293 (494)
+..++........ .....++|+|+||++|++++.. .+.++++||+||||++ ++.+|. ..++.++... ++
T Consensus 138 ~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~ 208 (235)
T 3llm_A 138 GKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PE 208 (235)
T ss_dssp TSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TT
T ss_pred CceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CC
Confidence 4444443322111 1124578999999999998875 3889999999999985 555555 4566666665 57
Q ss_pred CcEEEEEeecCcchHHHHHhhcCCC
Q 011065 294 RQILMFSATFPVTVKDFKDKYLQKP 318 (494)
Q Consensus 294 ~~~i~~SATl~~~~~~~~~~~~~~~ 318 (494)
.|+++||||++... +...+...|
T Consensus 209 ~~~il~SAT~~~~~--~~~~~~~~p 231 (235)
T 3llm_A 209 VRIVLMSATIDTSM--FCEYFFNCP 231 (235)
T ss_dssp SEEEEEECSSCCHH--HHHHTTSCC
T ss_pred CeEEEEecCCCHHH--HHHHcCCCC
Confidence 89999999998654 555555444
No 88
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.89 E-value=6.5e-23 Score=212.40 Aligned_cols=299 Identities=16% Similarity=0.219 Sum_probs=167.5
Q ss_pred CCCCCCcHHHHHHHHH----HhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhc
Q 011065 138 KGFERPSPIQEESIPI----ALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGK 213 (494)
Q Consensus 138 ~~~~~~~~~Q~~~i~~----~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~ 213 (494)
.|| .++++|.+++.. +..++++++.+|||+|||++|++|++.. +.+++|++||++|+.|+.+.+..+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------~~~~~~~~~t~~l~~q~~~~~~~l-- 74 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------KKKVLIFTRTHSQLDSIYKNAKLL-- 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------TCEEEEEESCHHHHHHHHHHHGGG--
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------CCcEEEEcCCHHHHHHHHHHHHhc--
Confidence 356 799999998654 4578899999999999999999999764 348999999999999998877664
Q ss_pred cCCcEEEEEECCCCh--------H------------------------HH---------------HHHhcCCCeEEEEch
Q 011065 214 HLNIQVMVTTGGTSL--------K------------------------DD---------------IMRLYQPVHLLVGTP 246 (494)
Q Consensus 214 ~~~~~~~~~~g~~~~--------~------------------------~~---------------~~~~~~~~~Ilv~T~ 246 (494)
++++..+.|.... . +. .+.....++|+|+|+
T Consensus 75 --~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~ 152 (540)
T 2vl7_A 75 --GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTY 152 (540)
T ss_dssp --TCCEEEC---------------------------------------------------------CTTGGGCSEEEEET
T ss_pred --CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEECh
Confidence 3344333332110 0 00 011123579999999
Q ss_pred HHHHHhHhcCC-------ccccccceEEecccccccCC-----------CcHH---------------------------
Q 011065 247 GRILDLSKKGV-------CILKDCSMLVMDEADKLLSP-----------EFQP--------------------------- 281 (494)
Q Consensus 247 ~~l~~~~~~~~-------~~l~~~~~iViDEah~~~~~-----------~~~~--------------------------- 281 (494)
..|++...... ..+.+.+++||||||.+.+. .+..
T Consensus 153 ~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~ 232 (540)
T 2vl7_A 153 PYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDYINLLI 232 (540)
T ss_dssp HHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 99987332211 13567899999999987320 0000
Q ss_pred ---------------------------HHHHHHH--------------------H---------------C-CCC-----
Q 011065 282 ---------------------------SVEQLIR--------------------F---------------L-PAN----- 293 (494)
Q Consensus 282 ---------------------------~~~~~~~--------------------~---------------~-~~~----- 293 (494)
.+..++. . + |..
T Consensus 233 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~~~~~l 312 (540)
T 2vl7_A 233 DYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSDVNQLI 312 (540)
T ss_dssp HHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSCHHHHH
T ss_pred HHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHHHHHHH
Confidence 0000000 0 0 000
Q ss_pred ---Cc----EEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEEE------eehh-----hhHHHHHHHHHHhc
Q 011065 294 ---RQ----ILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYA------FVEE-----RQKVHCLNTLFSKL 355 (494)
Q Consensus 294 ---~~----~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-----~~k~~~l~~ll~~~ 355 (494)
.. +|++||||++.. .+...| ...+.... +....+. ..+. ......+..++..
T Consensus 313 ~~~~~~~~~~IltSATL~p~~-~~~~~f-----~~~~~~~~---g~~~~~~~~~l~s~f~~r~~~~~~~~~~l~~~~~~- 382 (540)
T 2vl7_A 313 EDALNVKTFKVLMSGTLPESL-TLTNSY-----KIVVNESY---GRGEYYYCPNVTSELRKRNSNIPIYSILLKRIYEN- 382 (540)
T ss_dssp HHHTCCSSCEEEEESSCCTTC-CCTTEE-----EEECCCC----CCCEEEECTTCCCCGGGHHHHHHHHHHHHHHHHHT-
T ss_pred HHhcCccCCeEEEcccCCCCc-ccchhc-----CCchhhee---cCCcceeccccCCCcccccCHHHHHHHHHHHHHHh-
Confidence 12 488899987510 000001 01110000 0000000 0000 1122233333333
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEE--EcCcccccCCCCC----CCEE
Q 011065 356 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLV--CTDLFTRGIDIQA----VNVV 429 (494)
Q Consensus 356 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlv--aT~~~~~Gidi~~----v~~V 429 (494)
.++.+|||++|...++.+++.|.. . .+.+++.. ..+..+++.|+.+. .||+ +|..+.+|||+++ +++|
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~--~-~~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~V 456 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG--I-PVIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESL 456 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT--S-CEEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc--C-ceEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEE
Confidence 567899999999999999988864 2 24555553 46888999998864 5777 8899999999998 8899
Q ss_pred EEcCCCCC-H-----------------------------HHHHHHhccccCCCCcceEEEEecc
Q 011065 430 INFDFPKN-S-----------------------------ETYLHRVGRSGRFGHLGLAVNLITY 463 (494)
Q Consensus 430 I~~~~p~s-~-----------------------------~~~~Qr~GRagR~g~~g~~~~l~~~ 463 (494)
|++++|.. + ..+.|.+||+.|....--++++.+.
T Consensus 457 ii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 457 VLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp EEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 99998851 1 2346999999997544335555553
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.87 E-value=4.9e-20 Score=191.59 Aligned_cols=307 Identities=14% Similarity=0.119 Sum_probs=193.4
Q ss_pred CCcHHHHHHHHH----HhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011065 142 RPSPIQEESIPI----ALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI 217 (494)
Q Consensus 142 ~~~~~Q~~~i~~----~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (494)
.++|.|.+++.. +..++++++.+|||+|||++|++|++.. +.+++|++||++|+.|+.+.+..+....++
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~------~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~ 76 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV------KPKVLFVVRTHNEFYPIYRDLTKIREKRNI 76 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH------CSEEEEEESSGGGHHHHHHHHTTCCCSSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC------CCeEEEEcCCHHHHHHHHHHHHHHhhhcCc
Confidence 689999987764 4578999999999999999999999982 348999999999999999999988777778
Q ss_pred EEEEEECCCCh---------------------------------HHHH------------------HHhcCCCeEEEEch
Q 011065 218 QVMVTTGGTSL---------------------------------KDDI------------------MRLYQPVHLLVGTP 246 (494)
Q Consensus 218 ~~~~~~g~~~~---------------------------------~~~~------------------~~~~~~~~Ilv~T~ 246 (494)
++..+.|.... .... +.....++|+|+|+
T Consensus 77 ~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~ 156 (551)
T 3crv_A 77 TFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTY 156 (551)
T ss_dssp CEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEET
T ss_pred cEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCc
Confidence 88777663221 1111 22234689999999
Q ss_pred HHHHHhHhcCCcc-ccccceEEecccccccCCC-----------------------------------------------
Q 011065 247 GRILDLSKKGVCI-LKDCSMLVMDEADKLLSPE----------------------------------------------- 278 (494)
Q Consensus 247 ~~l~~~~~~~~~~-l~~~~~iViDEah~~~~~~----------------------------------------------- 278 (494)
+.|++...+.... .....++||||||.+.+ .
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~~ 235 (551)
T 3crv_A 157 PYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKYI 235 (551)
T ss_dssp HHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSCE
T ss_pred hHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 9998854333222 35678999999998754 1
Q ss_pred --------cHHHHHH----------------------------HHH----------------------------HCCCC-
Q 011065 279 --------FQPSVEQ----------------------------LIR----------------------------FLPAN- 293 (494)
Q Consensus 279 --------~~~~~~~----------------------------~~~----------------------------~~~~~- 293 (494)
+...+.. ++. .+...
T Consensus 236 ~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~~ 315 (551)
T 3crv_A 236 KVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDNE 315 (551)
T ss_dssp ECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCTT
T ss_pred ccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhccC
Confidence 0100000 000 01122
Q ss_pred CcEEEEEeecCcchHHHHHhhcCCC-eEE----E--ecccccccceeEEEEe-ehh------hhHHHHHHHHHH---hcC
Q 011065 294 RQILMFSATFPVTVKDFKDKYLQKP-YVI----N--LMDELTLKGITQYYAF-VEE------RQKVHCLNTLFS---KLQ 356 (494)
Q Consensus 294 ~~~i~~SATl~~~~~~~~~~~~~~~-~~~----~--~~~~~~~~~~~~~~~~-~~~------~~k~~~l~~ll~---~~~ 356 (494)
..+|++|||+.+ .......++-+ ... . +...+ ..+...+... .+. ..-...+...+. ...
T Consensus 316 ~svIltSaTL~~--~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~~ 392 (551)
T 3crv_A 316 LSIILMSGTLPP--REYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQA 392 (551)
T ss_dssp CEEEEEESSCCC--HHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEeeCCCc--HHHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHhC
Confidence 678999999975 34334344432 221 1 11111 1111111110 110 111222222222 235
Q ss_pred CCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEc--CcccccCCCC---C--CCEE
Q 011065 357 INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT--DLFTRGIDIQ---A--VNVV 429 (494)
Q Consensus 357 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT--~~~~~Gidi~---~--v~~V 429 (494)
++.+|||++|....+.+++. .+..+..-..+++ +..+++.|+.....||++| ..+.+|||++ + ++.|
T Consensus 393 ~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~v 466 (551)
T 3crv_A 393 KANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDV 466 (551)
T ss_dssp SSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEE
T ss_pred CCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEE
Confidence 67999999999999999873 3434433333444 3556777854445799998 6999999999 3 7788
Q ss_pred EEcCCCCC---------------------H---------HHHHHHhccccCCCCcceEEEEeccc
Q 011065 430 INFDFPKN---------------------S---------ETYLHRVGRSGRFGHLGLAVNLITYE 464 (494)
Q Consensus 430 I~~~~p~s---------------------~---------~~~~Qr~GRagR~g~~g~~~~l~~~~ 464 (494)
|..++|.. + ....|.+||+-|....--++.+++..
T Consensus 467 iI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 467 VIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp EEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 88776651 1 12359999999975554456666543
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.87 E-value=6.1e-22 Score=188.64 Aligned_cols=157 Identities=16% Similarity=0.160 Sum_probs=126.2
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEE
Q 011065 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~ 221 (494)
.|+++|.++++.++.+++.+++++||+|||++++.++...+... ..++||++|+++|+.|+.+.+.++.......+..
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~ 190 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC--SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhcccccceEEE
Confidence 79999999999999888899999999999999988877766532 2379999999999999999999987666667777
Q ss_pred EECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEe
Q 011065 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSA 301 (494)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 301 (494)
+.++..... ......+|+|+||+.+... ....+.++++||+||||++. ...+..++..+....+++++||
T Consensus 191 ~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~----~~~~~~il~~~~~~~~~l~lSA 260 (282)
T 1rif_A 191 IGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLAT----GKSISSIISGLNNCMFKFGLSG 260 (282)
T ss_dssp CSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCC----HHHHHHHTTTCTTCCEEEEECS
T ss_pred EeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCC----cccHHHHHHHhhcCCeEEEEeC
Confidence 777765432 2235679999999987543 22347789999999999985 3477788888877899999999
Q ss_pred ecCcchHHH
Q 011065 302 TFPVTVKDF 310 (494)
Q Consensus 302 Tl~~~~~~~ 310 (494)
|++......
T Consensus 261 Tp~~~~~~~ 269 (282)
T 1rif_A 261 SLRDGKANI 269 (282)
T ss_dssp SCCTTSTTH
T ss_pred CCCCcchHH
Confidence 987654433
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.81 E-value=4.5e-19 Score=163.82 Aligned_cols=137 Identities=22% Similarity=0.152 Sum_probs=109.5
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcE-EE
Q 011065 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQ-VM 220 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~-~~ 220 (494)
.++++|.++++.++.++++++++|||+|||++++.++... +.+++|+||+++|+.|+.+.+.++ ++. +.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~----~~~~v~ 162 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYVG 162 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG----CGGGEE
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC----CCCeEE
Confidence 7899999999999999899999999999999988777653 237999999999999988877763 566 77
Q ss_pred EEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 011065 221 VTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (494)
Q Consensus 221 ~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 300 (494)
.+.|+.. ...+|+|+|++.+...... ....+++||+||||++.+..+. .++..++ ..+++++|
T Consensus 163 ~~~g~~~---------~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~~----~i~~~~~-~~~~l~LS 225 (237)
T 2fz4_A 163 EFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYV----QIAQMSI-APFRLGLT 225 (237)
T ss_dssp EESSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTHH----HHHHTCC-CSEEEEEE
T ss_pred EEeCCCC---------CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHHH----HHHHhcc-CCEEEEEe
Confidence 7777654 3568999999998775542 1356899999999998776543 4555554 67789999
Q ss_pred eecCc
Q 011065 301 ATFPV 305 (494)
Q Consensus 301 ATl~~ 305 (494)
||++.
T Consensus 226 ATp~r 230 (237)
T 2fz4_A 226 ATFER 230 (237)
T ss_dssp ESCC-
T ss_pred cCCCC
Confidence 99763
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.77 E-value=1.6e-17 Score=173.92 Aligned_cols=313 Identities=14% Similarity=0.135 Sum_probs=187.2
Q ss_pred CCcHHHHHHHH----HHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011065 142 RPSPIQEESIP----IALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI 217 (494)
Q Consensus 142 ~~~~~Q~~~i~----~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (494)
.|++.|.+.+. .+.+++++++.+|||+|||++|++|++..+...+ .+++|++||++++.|+.+.+..+....++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~--~kvli~t~T~~l~~Qi~~el~~l~~~~~~ 80 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERK--LKVLYLVRTNSQEEQVIKELRSLSSTMKI 80 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcC--CeEEEECCCHHHHHHHHHHHHHHhhccCe
Confidence 57899988875 4567899999999999999999999999876533 48999999999999999999988766566
Q ss_pred EEEEEECCCChHH------------------HHH----------------------------------------------
Q 011065 218 QVMVTTGGTSLKD------------------DIM---------------------------------------------- 233 (494)
Q Consensus 218 ~~~~~~g~~~~~~------------------~~~---------------------------------------------- 233 (494)
++..+.|..+.-- .+.
T Consensus 81 ~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~die~l~~~~~~ 160 (620)
T 4a15_A 81 RAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEFYDYGER 160 (620)
T ss_dssp CEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred EEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCCHHHHHHHhhh
Confidence 6655544321000 000
Q ss_pred ----------HhcCCCeEEEEchHHHHHhHhcCC-----ccccccceEEecccccccC----------------------
Q 011065 234 ----------RLYQPVHLLVGTPGRILDLSKKGV-----CILKDCSMLVMDEADKLLS---------------------- 276 (494)
Q Consensus 234 ----------~~~~~~~Ilv~T~~~l~~~~~~~~-----~~l~~~~~iViDEah~~~~---------------------- 276 (494)
.....++|||+++..|++..-+.. ....+-.+|||||||.+.+
T Consensus 161 ~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~l~~~~~~l 240 (620)
T 4a15_A 161 NNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNRADREA 240 (620)
T ss_dssp TTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHHHHHHHHHH
T ss_pred cCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeCHHHHHHHHHHH
Confidence 001268999999987765332111 1124567999999998641
Q ss_pred ----CCc-------HHH-------HH-----------------------------------HH-------HH--------
Q 011065 277 ----PEF-------QPS-------VE-----------------------------------QL-------IR-------- 288 (494)
Q Consensus 277 ----~~~-------~~~-------~~-----------------------------------~~-------~~-------- 288 (494)
..+ ... +. .+ ..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 320 (620)
T 4a15_A 241 QAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYVENEKEK 320 (620)
T ss_dssp HHTTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHhhccc
Confidence 000 000 00 00 00
Q ss_pred -----------------H--CCC-------------------------------CCcEEEEEeecCcchHHHHHhhcCC-
Q 011065 289 -----------------F--LPA-------------------------------NRQILMFSATFPVTVKDFKDKYLQK- 317 (494)
Q Consensus 289 -----------------~--~~~-------------------------------~~~~i~~SATl~~~~~~~~~~~~~~- 317 (494)
. ... ...+|++||||.+ .+.....++-
T Consensus 321 ~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~~~~~~~il~SaTL~p--~~~~~~~lGl~ 398 (620)
T 4a15_A 321 VGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDP--FDFYSDITGFE 398 (620)
T ss_dssp TTSCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHGGGGGSEEEEEESSCCS--HHHHHHHHCCC
T ss_pred cccccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHHHHhCCeEEEEccCCCc--HHHHHHHhCCC
Confidence 0 000 1245899999985 3333333332
Q ss_pred CeEEEecccccccceeEEEEe-eh------hhh----HHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEEE
Q 011065 318 PYVINLMDELTLKGITQYYAF-VE------ERQ----KVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFY 386 (494)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~-~~------~~~----k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~ 386 (494)
.....+...+...+...++.. .+ ... -...+..++.. .++.+|||++|....+.+++.|. .+..-
T Consensus 399 ~~~~~~~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~-~~g~~lvlF~Sy~~l~~v~~~l~--~~~~~- 474 (620)
T 4a15_A 399 IPFKKIGEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILK-VKKNTIVYFPSYSLMDRVENRVS--FEHMK- 474 (620)
T ss_dssp CCEEECCCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHH-HCSCEEEEESCHHHHHHHTSSCC--SCCEE-
T ss_pred ceeeecCCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHHH--hcchh-
Confidence 223333322232222211110 00 011 11223333333 45779999999999999998876 22222
Q ss_pred EccCCCHHHHHHHHHHhhcCCccEEEEcC--cccccCCCCC--CCEEEEcCCCCC-------------------------
Q 011065 387 IHAKMLQDHRNRVFHDFRNGACRNLVCTD--LFTRGIDIQA--VNVVINFDFPKN------------------------- 437 (494)
Q Consensus 387 ~~~~~~~~~r~~i~~~f~~g~~~vlvaT~--~~~~Gidi~~--v~~VI~~~~p~s------------------------- 437 (494)
...+++...+..+++.|+ +.-.||++|. .+.+|||+++ .+.||..++|..
T Consensus 475 ~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y 553 (620)
T 4a15_A 475 EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSV 553 (620)
T ss_dssp CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHT
T ss_pred ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHh
Confidence 334445567899999999 8888999984 8999999998 678998888752
Q ss_pred ----HHHHHHHhccccCCCCcceEEEEecc
Q 011065 438 ----SETYLHRVGRSGRFGHLGLAVNLITY 463 (494)
Q Consensus 438 ----~~~~~Qr~GRagR~g~~g~~~~l~~~ 463 (494)
.....|.+||+-|.-..--++.+++.
T Consensus 554 ~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 554 VYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp HHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred HHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 11236999999997554445555543
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.75 E-value=4.3e-18 Score=159.97 Aligned_cols=126 Identities=17% Similarity=0.218 Sum_probs=100.4
Q ss_pred ehhhhHHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHc-CCcEEEEccCCCHHHHHHHHHHhhcC-Ccc-EEEE
Q 011065 339 VEERQKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITEL-GYSCFYIHAKMLQDHRNRVFHDFRNG-ACR-NLVC 413 (494)
Q Consensus 339 ~~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~i~~~f~~g-~~~-vlva 413 (494)
.....|+..+..++... ...++||||.+...++.+...|.+. ++.+..+||++++.+|..+++.|+++ ..+ +|++
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 34567888888888776 6789999999999999999999885 99999999999999999999999998 666 7899
Q ss_pred cCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceE--EEEeccc
Q 011065 414 TDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLA--VNLITYE 464 (494)
Q Consensus 414 T~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~--~~l~~~~ 464 (494)
|+++++|+|++++++||+||+|+++..|.||+||++|.|+.+.+ |.|++..
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 99999999999999999999999999999999999999987654 6777765
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.91 E-value=5.9e-09 Score=109.04 Aligned_cols=146 Identities=22% Similarity=0.278 Sum_probs=89.3
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCCCchhH--HhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEE
Q 011065 144 SPIQEESIPIALTGSDILARAKNGTGKTA--AFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (494)
Q Consensus 144 ~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~--~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~ 221 (494)
.+.|..+++.++.++.+++.|++|||||+ .++++++..+.. ..+.++++++||..++.++.+.+......+++....
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~ 229 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQ 229 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-cCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHH
Confidence 68999999999999999999999999995 455555554422 234589999999999999888776655444321100
Q ss_pred EECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEe
Q 011065 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSA 301 (494)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 301 (494)
.. . .......+ ..++-.+|+.. . +.........+++||||||+. ++ ...+..++..++...++|++.=
T Consensus 230 ~~-~--~~~~~~Ti---h~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAsm-l~---~~~~~~Ll~~l~~~~~liLvGD 297 (608)
T 1w36_D 230 KK-R--IPEDASTL---HRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEASM-ID---LPMMSRLIDALPDHARVIFLGD 297 (608)
T ss_dssp CC-S--CSCCCBTT---TSCC-------------CTTSCCSCSEEEECSGGG-CB---HHHHHHHHHTCCTTCEEEEEEC
T ss_pred Hh-c--cchhhhhh---HhhhccCCCch-H-HHhccCCCCCCCEEEEechhh-CC---HHHHHHHHHhCCCCCEEEEEcc
Confidence 00 0 00000000 01111222211 0 111111223789999999994 44 5677888899988888888754
Q ss_pred e
Q 011065 302 T 302 (494)
Q Consensus 302 T 302 (494)
.
T Consensus 298 ~ 298 (608)
T 1w36_D 298 R 298 (608)
T ss_dssp T
T ss_pred h
Confidence 4
No 95
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.41 E-value=1.5e-06 Score=87.90 Aligned_cols=134 Identities=17% Similarity=0.214 Sum_probs=79.5
Q ss_pred CCCCCCcHHHHHHHHHHhcC----C-cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHh
Q 011065 138 KGFERPSPIQEESIPIALTG----S-DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELG 212 (494)
Q Consensus 138 ~~~~~~~~~Q~~~i~~~~~~----~-~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~ 212 (494)
..|..+++-|.+++..++.. + .++|.|+.|||||+.. ..++..+...+. ..+++++||...+..+.+.+
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~~-~~il~~a~T~~Aa~~l~~~~---- 94 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTGE-TGIILAAPTHAAKKILSKLS---- 94 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTTC-CCEEEEESSHHHHHHHHHHH----
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcCC-ceEEEecCcHHHHHHHHhhh----
Confidence 45788999999999977543 3 7999999999999863 445555554433 36899999988775554432
Q ss_pred ccCCcEEEEEECCCChHHHHHHh---cCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHH
Q 011065 213 KHLNIQVMVTTGGTSLKDDIMRL---YQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRF 289 (494)
Q Consensus 213 ~~~~~~~~~~~g~~~~~~~~~~~---~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~ 289 (494)
+..+..+ ....... ...... +. ......+..+++||+||++.+. ...+..++..
T Consensus 95 ---~~~~~T~------h~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~iiiDE~~~~~----~~~~~~l~~~ 151 (459)
T 3upu_A 95 ---GKEASTI------HSILKINPVTYEENVL-FE---------QKEVPDLAKCRVLICDEVSMYD----RKLFKILLST 151 (459)
T ss_dssp ---SSCEEEH------HHHHTEEEEECSSCEE-EE---------ECSCCCCSSCSEEEESCGGGCC----HHHHHHHHHH
T ss_pred ---ccchhhH------HHHhccCcccccccch-hc---------ccccccccCCCEEEEECchhCC----HHHHHHHHHh
Confidence 1111110 0000000 000000 00 0112346678999999999652 3456666777
Q ss_pred CCCCCcEEEEE
Q 011065 290 LPANRQILMFS 300 (494)
Q Consensus 290 ~~~~~~~i~~S 300 (494)
++...+++++.
T Consensus 152 ~~~~~~~~~vG 162 (459)
T 3upu_A 152 IPPWCTIIGIG 162 (459)
T ss_dssp SCTTCEEEEEE
T ss_pred ccCCCEEEEEC
Confidence 76566555544
No 96
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.39 E-value=1.2e-06 Score=90.64 Aligned_cols=121 Identities=17% Similarity=0.185 Sum_probs=79.5
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEE
Q 011065 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~ 221 (494)
.+++.|.+++..++.++.+++.|++|+|||+. +..++..+... +.++++++||...+..+.+.. +..
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~~--g~~Vl~~ApT~~Aa~~L~e~~-------~~~--- 255 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAESL--GLEVGLCAPTGKAARRLGEVT-------GRT--- 255 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHH-------TSC---
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHhc--CCeEEEecCcHHHHHHhHhhh-------ccc---
Confidence 57899999999999988899999999999987 33344444433 347899999998876554432 111
Q ss_pred EECCCChHHHHHHhcCCCeEEEEchHHHHHh----HhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEE
Q 011065 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDL----SKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQIL 297 (494)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~----~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i 297 (494)
..|..+++.. +.........+++|||||++.+. ...+..++..++...++|
T Consensus 256 ---------------------a~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~li 310 (574)
T 3e1s_A 256 ---------------------ASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGARVL 310 (574)
T ss_dssp ---------------------EEEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCEEE
T ss_pred ---------------------HHHHHHHHcCCcchhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCEEE
Confidence 1121111110 11112224468999999999763 456677778887777766
Q ss_pred EEE
Q 011065 298 MFS 300 (494)
Q Consensus 298 ~~S 300 (494)
++-
T Consensus 311 lvG 313 (574)
T 3e1s_A 311 LVG 313 (574)
T ss_dssp EEE
T ss_pred EEe
Confidence 653
No 97
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.33 E-value=8.2e-07 Score=93.83 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=53.0
Q ss_pred CCcHHHHHHHHHHhcCCc-EEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011065 142 RPSPIQEESIPIALTGSD-ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL 211 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~-~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (494)
.+++-|.+|+..++..++ .+|.||+|||||.+..-.+.+.+.. +.++|+++||...+..+.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHHhc
Confidence 478999999999988776 7899999999999865555544443 348999999999998887766543
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.20 E-value=1.5e-05 Score=83.69 Aligned_cols=70 Identities=16% Similarity=0.132 Sum_probs=53.5
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011065 140 FERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL 211 (494)
Q Consensus 140 ~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (494)
+..+++.|.+|+..++.+..++|.||+|+|||+.... ++..+... .+.++++++||...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHTS-SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHHc-CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 3467899999999998877799999999999987443 33333332 2348999999999998887766543
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=1.3e-05 Score=86.04 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=52.9
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011065 141 ERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL 211 (494)
Q Consensus 141 ~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (494)
..+++.|.+|+..++.+..++|.||+|||||+.....+ ..+... .+.++|+++||...+.++.+.+.+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i-~~l~~~-~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIV-YHLSKI-HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHH-HHHHHH-HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH-HHHHhC-CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 35789999999999887778999999999998754333 333221 2237999999999998888877654
No 100
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.05 E-value=0.00018 Score=76.09 Aligned_cols=70 Identities=19% Similarity=0.197 Sum_probs=53.4
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCC-CceEEEEEcCcHHHHHHHHHHHHHHh
Q 011065 141 ERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN-NVIQVVILVPTRELALQTSQVCKELG 212 (494)
Q Consensus 141 ~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~-~~~~~lil~P~~~la~q~~~~~~~~~ 212 (494)
..+++-|.+++.. ....++|.|+.|||||++.+--+...+...+ ...++|++++|+..+..+.+.+..+.
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4789999999983 3556999999999999985554544444322 33489999999999999888777664
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.03 E-value=4e-05 Score=82.26 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=52.4
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011065 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL 211 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (494)
.+++.|.+|+..++.+..++|.||+|+|||+... .++..+... .+.++++++||...+.++.+.+...
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT-CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc-CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 5789999999999887779999999999998744 344444332 2348999999999988887766543
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.72 E-value=0.00023 Score=66.95 Aligned_cols=124 Identities=11% Similarity=0.097 Sum_probs=90.5
Q ss_pred ehhhhHHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCc
Q 011065 339 VEERQKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL 416 (494)
Q Consensus 339 ~~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~ 416 (494)
.....|+..|..++... ...++|||+......+.+.++|...++.+..+.|.....+++ . .++...+.+.|..
T Consensus 105 ~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-~----~~~~~~i~Lltsa 179 (328)
T 3hgt_A 105 AENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-A----NDFSCTVHLFSSE 179 (328)
T ss_dssp HHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESS
T ss_pred HHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-c----ccCCceEEEEECC
Confidence 34567888888888765 345999999999999999999999999999999986543322 1 2455666666766
Q ss_pred ccccCC-----CCCCCEEEEcCCCCCHHHH-HHHhccccCCC----CcceEEEEecccchH
Q 011065 417 FTRGID-----IQAVNVVINFDFPKNSETY-LHRVGRSGRFG----HLGLAVNLITYEDRF 467 (494)
Q Consensus 417 ~~~Gid-----i~~v~~VI~~~~p~s~~~~-~Qr~GRagR~g----~~g~~~~l~~~~~~~ 467 (494)
.+-|++ ....+.||.||..+++.+= +|.+-|+.|.| ++-.+|+|++.+..+
T Consensus 180 g~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiE 240 (328)
T 3hgt_A 180 GINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSID 240 (328)
T ss_dssp CCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHH
T ss_pred CCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHH
Confidence 666675 6789999999999988874 89888888873 356789999876433
No 103
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.38 E-value=0.00043 Score=60.30 Aligned_cols=39 Identities=15% Similarity=0.013 Sum_probs=26.5
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcH
Q 011065 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (494)
++-.++.|++|+|||+..+..+...... +.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~---g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLG---KKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT---TCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeecc
Confidence 4557899999999999855444433322 23688888873
No 104
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.34 E-value=0.00083 Score=66.23 Aligned_cols=106 Identities=23% Similarity=0.219 Sum_probs=62.9
Q ss_pred EEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCC
Q 011065 160 ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPV 239 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 239 (494)
.++.|+.|||||+. +.+.+.. ...+|++||++++..+.+.+.+. +. . ...
T Consensus 164 ~~I~G~aGsGKTt~----I~~~~~~----~~~lVlTpT~~aa~~l~~kl~~~----~~---------~---------~~~ 213 (446)
T 3vkw_A 164 VLVDGVPGCGKTKE----ILSRVNF----EEDLILVPGRQAAEMIRRRANAS----GI---------I---------VAT 213 (446)
T ss_dssp EEEEECTTSCHHHH----HHHHCCT----TTCEEEESCHHHHHHHHHHHTTT----SC---------C---------CCC
T ss_pred EEEEcCCCCCHHHH----HHHHhcc----CCeEEEeCCHHHHHHHHHHhhhc----Cc---------c---------ccc
Confidence 78999999999997 3333321 14699999999997766654321 10 0 111
Q ss_pred eEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEee
Q 011065 240 HLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSAT 302 (494)
Q Consensus 240 ~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 302 (494)
..-+.|.+.++. .......-.+++||||||-.+ + ...+..++...+. .++|++-=+
T Consensus 214 ~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~-~---~~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 214 KDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLML-H---TGCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp TTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGS-C---HHHHHHHHHHTTC-SEEEEEECT
T ss_pred cceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccC-C---HHHHHHHHHhCCC-CEEEEecCc
Confidence 233778777643 221111234899999999854 3 3344445555543 555555444
No 105
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.27 E-value=0.0033 Score=61.20 Aligned_cols=72 Identities=14% Similarity=0.052 Sum_probs=54.8
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhcc
Q 011065 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKH 214 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~ 214 (494)
.++|+|...+..+...+.+++..+-+.|||......++..+... .+..++++.|+..-|..+.+.++.+...
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~-~g~~v~~vA~t~~qA~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS-SSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 68999999998876556689999999999987665555433332 3447999999999988777777666543
No 106
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.22 E-value=0.0011 Score=57.36 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCCchhHHh
Q 011065 156 TGSDILARAKNGTGKTAAF 174 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~ 174 (494)
.++.+++.||+|+|||+.+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp GCCEEEECCSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3677999999999999864
No 107
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.03 E-value=0.00045 Score=62.00 Aligned_cols=90 Identities=12% Similarity=0.100 Sum_probs=49.9
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhc
Q 011065 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLY 236 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 236 (494)
|.-+++.|++|+|||+..+..+...... +.+++++.|...-. ....+....++..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~---g~kVli~~~~~d~r-----~~~~i~srlG~~~----------------- 66 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYA---DVKYLVFKPKIDTR-----SIRNIQSRTGTSL----------------- 66 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEEECCCGG-----GCSSCCCCCCCSS-----------------
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEEeccCch-----HHHHHHHhcCCCc-----------------
Confidence 3347889999999999855554444333 23678887653210 0001111111110
Q ss_pred CCCeEEEEchHHHHHhHhcCCccccccceEEecccccc
Q 011065 237 QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKL 274 (494)
Q Consensus 237 ~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~ 274 (494)
..+.+.+...++..+..... -..+++|||||++.+
T Consensus 67 --~~~~~~~~~~i~~~i~~~~~-~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 --PSVEVESAPEILNYIMSNSF-NDETKVIGIDEVQFF 101 (223)
T ss_dssp --CCEEESSTHHHHHHHHSTTS-CTTCCEEEECSGGGS
T ss_pred --cccccCCHHHHHHHHHHHhh-CCCCCEEEEecCccC
Confidence 12234555666665554321 345899999999975
No 108
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.02 E-value=0.011 Score=61.40 Aligned_cols=144 Identities=14% Similarity=0.117 Sum_probs=85.9
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCC--cE-
Q 011065 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLN--IQ- 218 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~--~~- 218 (494)
.++|+|...+..+...+.+++..+-|+|||+.....++..+...+ +..++++.|+...|..+.+.++.+..... +.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~~~ 241 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQP 241 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-SCEEEEEESSHHHHHHHHHHHHHHHTTSCTTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHHHHhChHhhcc
Confidence 479999999988755667999999999999986655554444332 44799999999999888887777765442 11
Q ss_pred -EEEEECCCChHHHHHHhcCCCeEEEEc--hHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCC--CC
Q 011065 219 -VMVTTGGTSLKDDIMRLYQPVHLLVGT--PGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLP--AN 293 (494)
Q Consensus 219 -~~~~~g~~~~~~~~~~~~~~~~Ilv~T--~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~--~~ 293 (494)
.... ....+ .+..+..|.+.+ |+.+. -.+++++|+||+|.+-+ ....+..+...+. .+
T Consensus 242 ~~~~~-~~~~i-----~~~nGs~i~~~s~~~~~lr---------G~~~~~~iiDE~~~~~~--~~~l~~~~~~~l~~~~~ 304 (592)
T 3cpe_A 242 GIVEW-NKGSI-----ELDNGSSIGAYASSPDAVR---------GNSFAMIYIEDCAFIPN--FHDSWLAIQPVISSGRR 304 (592)
T ss_dssp CEEEE-CSSEE-----EETTSCEEEEEECCHHHHH---------HSCCSEEEEETGGGCTT--HHHHHHHHHHHHSSSSC
T ss_pred ccccC-CccEE-----EecCCCEEEEEeCCCCCcc---------CCCcceEEEehhccCCc--hhHHHHHHHHHhccCCC
Confidence 1111 11100 111333444332 33221 12478899999998643 2344444444443 23
Q ss_pred CcEEEEEeecC
Q 011065 294 RQILMFSATFP 304 (494)
Q Consensus 294 ~~~i~~SATl~ 304 (494)
.++ ++..|+.
T Consensus 305 ~~i-i~isTP~ 314 (592)
T 3cpe_A 305 SKI-IITTTPN 314 (592)
T ss_dssp CEE-EEEECCC
T ss_pred ceE-EEEeCCC
Confidence 444 4444543
No 109
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.99 E-value=0.0014 Score=57.24 Aligned_cols=39 Identities=10% Similarity=-0.000 Sum_probs=26.7
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcH
Q 011065 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (494)
|+-.++.|++|||||+..+..+...... +.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~---g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIA---KQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEecc
Confidence 3447889999999999855544444322 33789988873
No 110
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.98 E-value=0.0018 Score=57.26 Aligned_cols=37 Identities=8% Similarity=0.050 Sum_probs=26.2
Q ss_pred EEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHH
Q 011065 160 ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE 199 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~ 199 (494)
.++.|++|||||+..+.-+..+.... .+++++.|...
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g---~kVli~k~~~d 67 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAK---QHAIVFKPCID 67 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTT---CCEEEEECC--
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC---CEEEEEEeccC
Confidence 67899999999998665555554332 37899998753
No 111
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.90 E-value=0.0055 Score=60.52 Aligned_cols=131 Identities=17% Similarity=0.227 Sum_probs=72.9
Q ss_pred cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhc
Q 011065 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLY 236 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 236 (494)
.++++|++|+|||+.....+. .+...+ .++++++ +.+.-+ .+.+..++...++.+.....+.
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~-~l~~~G--~kVllv~~D~~r~~a---~eqL~~~~~~~gv~~~~~~~~~---------- 162 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAY-FYKKRG--YKVGLVAADVYRPAA---YDQLLQLGNQIGVQVYGEPNNQ---------- 162 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHH-HHHHTT--CCEEEEEECCSCHHH---HHHHHHHHHTTTCCEECCTTCS----------
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHHcC--CeEEEEecCccchhH---HHHHHHHHHhcCCceeeccccC----------
Confidence 478899999999997544333 233332 2555555 455444 2333334444444332211111
Q ss_pred CCCeEEEEchHHHH-HhHhcCCccccccceEEeccccccc---CCCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHH
Q 011065 237 QPVHLLVGTPGRIL-DLSKKGVCILKDCSMLVMDEADKLL---SPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKD 312 (494)
Q Consensus 237 ~~~~Ilv~T~~~l~-~~~~~~~~~l~~~~~iViDEah~~~---~~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~ 312 (494)
.|..+. ..+.. .....+++||+|++-++. +..+...+..+.....++.-+++++|+...+......
T Consensus 163 --------dp~~i~~~al~~--a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~ 232 (433)
T 3kl4_A 163 --------NPIEIAKKGVDI--FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLAS 232 (433)
T ss_dssp --------CHHHHHHHHHHH--TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHH
T ss_pred --------CHHHHHHHHHHH--HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHH
Confidence 121111 11221 113478999999998753 3445666777777776677778899987655555555
Q ss_pred hhc
Q 011065 313 KYL 315 (494)
Q Consensus 313 ~~~ 315 (494)
.|.
T Consensus 233 ~f~ 235 (433)
T 3kl4_A 233 RFH 235 (433)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 112
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.88 E-value=0.00057 Score=57.29 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.+..+++.||+|+|||+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567799999999999986
No 113
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.0077 Score=56.96 Aligned_cols=25 Identities=4% Similarity=0.004 Sum_probs=18.6
Q ss_pred CcEEEEccCCCchhHHhHHHHHHhhh
Q 011065 158 SDILARAKNGTGKTAAFCIPALEKID 183 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~ 183 (494)
.++++.||+|+|||++. ..++..+.
T Consensus 46 ~~lli~GpPGTGKT~~v-~~v~~~L~ 70 (318)
T 3te6_A 46 KLFYITNADDSTKFQLV-NDVMDELI 70 (318)
T ss_dssp CEEEEECCCSHHHHHHH-HHHHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 46999999999999873 34444443
No 114
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.71 E-value=0.0073 Score=57.59 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchhHHh
Q 011065 158 SDILARAKNGTGKTAAF 174 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (494)
..+++.||+|+|||+.+
T Consensus 38 ~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp SSEEEECSSSSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 56999999999999873
No 115
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.68 E-value=0.014 Score=51.63 Aligned_cols=39 Identities=15% Similarity=0.349 Sum_probs=24.5
Q ss_pred cccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 011065 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (494)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 300 (494)
....+|||||+|.+.. .....+..++...+.+..+|++|
T Consensus 101 ~~~~vliiDe~~~l~~-~~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTA-DAQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCH-HHHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCH-HHHHHHHHHHHhcCCCCeEEEEe
Confidence 4567999999998743 23445555666655555555444
No 116
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.64 E-value=0.0064 Score=54.23 Aligned_cols=39 Identities=8% Similarity=-0.013 Sum_probs=27.7
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcH
Q 011065 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (494)
|+-.++.|++|||||+..+.-+..+... +.+++++-|..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~---g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIA---QYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTT---TCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC---CCeEEEEeecC
Confidence 3447889999999999866555555433 33788888764
No 117
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.57 E-value=0.0032 Score=52.20 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=16.6
Q ss_pred HhcCCcEEEEccCCCchhHH
Q 011065 154 ALTGSDILARAKNGTGKTAA 173 (494)
Q Consensus 154 ~~~~~~~ii~~~TGsGKT~~ 173 (494)
...+..+++.||+|+|||+.
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 34556799999999999975
No 118
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.54 E-value=0.0034 Score=60.30 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=23.9
Q ss_pred CcHHHHHHHHHHh----cCC---cEEEEccCCCchhHHhHH
Q 011065 143 PSPIQEESIPIAL----TGS---DILARAKNGTGKTAAFCI 176 (494)
Q Consensus 143 ~~~~Q~~~i~~~~----~~~---~~ii~~~TGsGKT~~~~~ 176 (494)
++|+|.+++..+. +++ .+++.||.|+|||+.+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH
Confidence 3577777765543 343 289999999999987443
No 119
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.52 E-value=0.0062 Score=50.53 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=16.7
Q ss_pred hcCCcEEEEccCCCchhHHh
Q 011065 155 LTGSDILARAKNGTGKTAAF 174 (494)
Q Consensus 155 ~~~~~~ii~~~TGsGKT~~~ 174 (494)
..+..+++.||+|+|||+.+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 35567999999999999863
No 120
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.43 E-value=0.0073 Score=53.21 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=26.2
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcH
Q 011065 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (494)
|.-.++.|++|||||+..+..+..+. ..+ .+++|+.|..
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~-~~g--~kvli~kp~~ 66 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGI-YAK--QKVVVFKPAI 66 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHH-HTT--CCEEEEEEC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH-HcC--CceEEEEecc
Confidence 34478999999999997555444333 322 3688888864
No 121
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.41 E-value=0.026 Score=55.72 Aligned_cols=130 Identities=15% Similarity=0.165 Sum_probs=70.3
Q ss_pred cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhc
Q 011065 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLY 236 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 236 (494)
.++++|++|+|||+.....+ .++...+ .++++++ |.|.-+ .+.+..++...++.+.....+.
T Consensus 102 vIlivG~~G~GKTTt~~kLA-~~l~~~G--~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~~~~---------- 165 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLA-RYFQKRG--YKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNPQEK---------- 165 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HHHHTTT--CCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCTTCC----------
T ss_pred EEEEECcCCCCHHHHHHHHH-HHHHHCC--CeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecCCCC----------
Confidence 47889999999999754333 3333333 3555555 666655 3344445555555543221111
Q ss_pred CCCeEEEEchHHHH-HhHhcCCccccccceEEecccccccCC-CcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhh
Q 011065 237 QPVHLLVGTPGRIL-DLSKKGVCILKDCSMLVMDEADKLLSP-EFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKY 314 (494)
Q Consensus 237 ~~~~Ilv~T~~~l~-~~~~~~~~~l~~~~~iViDEah~~~~~-~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~ 314 (494)
.|..+. +.+.. ..-..+++||+|.+=++... .....+..+.....++.-+++++||...+.......|
T Consensus 166 --------dp~~i~~~al~~--a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f 235 (443)
T 3dm5_A 166 --------DAIKLAKEGVDY--FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAF 235 (443)
T ss_dssp --------CHHHHHHHHHHH--HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHH
T ss_pred --------CHHHHHHHHHHH--HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHH
Confidence 122111 11111 11234889999998754322 2344455555555566667888888765555555444
No 122
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.37 E-value=0.0066 Score=52.70 Aligned_cols=37 Identities=5% Similarity=-0.076 Sum_probs=26.5
Q ss_pred CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCc
Q 011065 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPT 197 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~ 197 (494)
+=.++.|++|||||+..+..+-.+.... .+++++.|.
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~---~kvl~~kp~ 57 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQ---YKCLVIKYA 57 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEET
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEccc
Confidence 3478999999999987555555444432 378888876
No 123
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.35 E-value=0.0045 Score=65.53 Aligned_cols=69 Identities=17% Similarity=0.153 Sum_probs=52.3
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhc-CCCceEEEEEcCcHHHHHHHHHHHHHHh
Q 011065 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQ-DNNVIQVVILVPTRELALQTSQVCKELG 212 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~P~~~la~q~~~~~~~~~ 212 (494)
.+++-|.+++... +..++|.|..|||||.+..--+...+.. .-...++|+|+.|+..+..+.+.+....
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 4788999999753 5679999999999999855544444443 2234579999999999999888777654
No 124
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.32 E-value=0.011 Score=61.41 Aligned_cols=112 Identities=20% Similarity=0.234 Sum_probs=74.6
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEE
Q 011065 142 RPSPIQEESIPIALTG--SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQV 219 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~ 219 (494)
.++.-|.+++..+..- ...++.|+-|.|||++.-+.+-.. .. .++|.+|+.+-+..+.+. ...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~-~~-----~~~vtAP~~~a~~~l~~~----~~~----- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRI-AG-----RAIVTAPAKASTDVLAQF----AGE----- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHS-SS-----CEEEECSSCCSCHHHHHH----HGG-----
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHH-Hh-----CcEEECCCHHHHHHHHHH----hhC-----
Confidence 5788999999988863 348999999999997654444333 21 368888998876543332 211
Q ss_pred EEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEE
Q 011065 220 MVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMF 299 (494)
Q Consensus 220 ~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (494)
.|-+..|..+.. .....+++|||||=.+ -.+.+..++... ..++|
T Consensus 240 --------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaI----p~pll~~ll~~~----~~v~~ 284 (671)
T 2zpa_A 240 --------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAI----PAPLLHQLVSRF----PRTLL 284 (671)
T ss_dssp --------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGS----CHHHHHHHHTTS----SEEEE
T ss_pred --------------------CeEEeCchhhhh-------CcccCCEEEEEchhcC----CHHHHHHHHhhC----CeEEE
Confidence 144556665432 2446899999999865 366677776633 25788
Q ss_pred Eeec
Q 011065 300 SATF 303 (494)
Q Consensus 300 SATl 303 (494)
|.|.
T Consensus 285 ~tTv 288 (671)
T 2zpa_A 285 TTTV 288 (671)
T ss_dssp EEEB
T ss_pred EecC
Confidence 8885
No 125
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.31 E-value=0.0056 Score=55.28 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhHHh
Q 011065 157 GSDILARAKNGTGKTAAF 174 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (494)
++.+++.||+|+|||+.+
T Consensus 52 ~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 466999999999999863
No 126
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.29 E-value=0.018 Score=53.35 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=14.7
Q ss_pred CcEEEEccCCCchhHHh
Q 011065 158 SDILARAKNGTGKTAAF 174 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (494)
..+++.||+|+|||+.+
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 35999999999999864
No 127
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.25 E-value=0.0099 Score=57.92 Aligned_cols=18 Identities=44% Similarity=0.436 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHh
Q 011065 157 GSDILARAKNGTGKTAAF 174 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (494)
+..+++.||+|+|||+..
T Consensus 44 ~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCEEECBCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 356999999999999873
No 128
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.17 E-value=0.036 Score=52.67 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=24.5
Q ss_pred cccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEE
Q 011065 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILM 298 (494)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~ 298 (494)
....+|||||+|.+........+..++...+.+..+|+
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~ 141 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIII 141 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEE
Confidence 46789999999988522334455555555555565555
No 129
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.13 E-value=0.019 Score=57.26 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchhHHh
Q 011065 158 SDILARAKNGTGKTAAF 174 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (494)
..+++.||+|+|||+.+
T Consensus 131 ~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp CCEEEECSSSSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999863
No 130
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.08 E-value=0.012 Score=62.75 Aligned_cols=69 Identities=17% Similarity=0.193 Sum_probs=52.3
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCC-CceEEEEEcCcHHHHHHHHHHHHHH
Q 011065 141 ERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN-NVIQVVILVPTRELALQTSQVCKEL 211 (494)
Q Consensus 141 ~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~-~~~~~lil~P~~~la~q~~~~~~~~ 211 (494)
..+++-|.+++.. ....++|.|..|||||.+...-+...+...+ ...++|+|+.|+..|..+.+.+..+
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4689999999976 3457999999999999985554544444322 3457999999999998887776665
No 131
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.01 E-value=0.011 Score=67.01 Aligned_cols=68 Identities=26% Similarity=0.293 Sum_probs=53.8
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCC---CceEEEEEcCcHHHHHHHHHHHHHH
Q 011065 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN---NVIQVVILVPTRELALQTSQVCKEL 211 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~---~~~~~lil~P~~~la~q~~~~~~~~ 211 (494)
.+++-|.++|..- +++++|.|..|||||.+.+.-++..+.... ...++|++++|+..+..+.+.+...
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 6789999999764 778999999999999996665666555532 3458999999999998887766553
No 132
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.92 E-value=0.0077 Score=56.89 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhHHh
Q 011065 158 SDILARAKNGTGKTAAF 174 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (494)
..+++.||+|+|||+.+
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45999999999999874
No 133
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.88 E-value=0.041 Score=47.09 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhHHh
Q 011065 157 GSDILARAKNGTGKTAAF 174 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (494)
...+++.||+|+|||+.+
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 346999999999999864
No 134
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.87 E-value=0.027 Score=53.35 Aligned_cols=39 Identities=18% Similarity=0.404 Sum_probs=24.7
Q ss_pred cccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 011065 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (494)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 300 (494)
....+||+||+|.+.. .....+..++...+.+..+|+.+
T Consensus 109 ~~~~vliiDe~~~l~~-~~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQ-DAQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCH-HHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCH-HHHHHHHHHHHhcCCCCeEEEEe
Confidence 4578999999998743 23444555566655555555543
No 135
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.74 E-value=0.08 Score=50.50 Aligned_cols=17 Identities=35% Similarity=0.407 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchhHHh
Q 011065 158 SDILARAKNGTGKTAAF 174 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (494)
..+++.||+|+|||+.+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 46999999999999863
No 136
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.64 E-value=0.012 Score=57.34 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=14.5
Q ss_pred cEEEEccCCCchhHHh
Q 011065 159 DILARAKNGTGKTAAF 174 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (494)
.+++.||+|+|||+..
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999874
No 137
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.64 E-value=0.012 Score=57.43 Aligned_cols=17 Identities=35% Similarity=0.192 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhHHh
Q 011065 158 SDILARAKNGTGKTAAF 174 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (494)
+.+++.||+|+|||+.+
T Consensus 46 ~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45999999999999874
No 138
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.61 E-value=0.034 Score=51.68 Aligned_cols=53 Identities=26% Similarity=0.186 Sum_probs=30.0
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHH-HHHHHHHH--hcCCcEEEEccCCCchhHHh
Q 011065 119 GNEFEDYFLKRELLMGIFEKGFERPSPI-QEESIPIA--LTGSDILARAKNGTGKTAAF 174 (494)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~-Q~~~i~~~--~~~~~~ii~~~TGsGKT~~~ 174 (494)
...|.++.-.+...+.+.+.- . .+. ..+.+..+ ...+.+++.||+|+|||+.+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~-~--~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVV-E--LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHT-H--HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHH-H--HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 345777766666666665421 0 000 01111111 23456999999999999863
No 139
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.60 E-value=0.039 Score=47.41 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhHHh
Q 011065 158 SDILARAKNGTGKTAAF 174 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (494)
..+++.|++|+|||+.+
T Consensus 44 ~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 45999999999999863
No 140
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.54 E-value=0.052 Score=48.59 Aligned_cols=16 Identities=31% Similarity=0.382 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhHHh
Q 011065 159 DILARAKNGTGKTAAF 174 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (494)
.+++.||+|+|||+..
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4899999999999863
No 141
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.49 E-value=0.026 Score=54.19 Aligned_cols=39 Identities=13% Similarity=0.332 Sum_probs=24.9
Q ss_pred cccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 011065 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (494)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 300 (494)
....+|++||+|.+.. .....+..++...+....+|+.+
T Consensus 132 ~~~~vliiDE~~~l~~-~~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTA-DAQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCH-HHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCH-HHHHHHHHHHHhcCCCceEEEEe
Confidence 4568999999998743 23445556666665555555544
No 142
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.49 E-value=0.033 Score=53.62 Aligned_cols=42 Identities=14% Similarity=0.329 Sum_probs=27.6
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEee
Q 011065 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSAT 302 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 302 (494)
..+..+||+||+|.+ +......+.+++...+.+..+|+.|-.
T Consensus 132 ~~~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~~ 173 (354)
T 1sxj_E 132 AHRYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCDS 173 (354)
T ss_dssp --CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEESC
T ss_pred CCCCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeCC
Confidence 346789999999984 544556666777776666555555544
No 143
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.45 E-value=0.04 Score=48.22 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=18.2
Q ss_pred CcEEEEccCCCchhHHhHHHHHHhhh
Q 011065 158 SDILARAKNGTGKTAAFCIPALEKID 183 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~ 183 (494)
+.+++.||+|+|||+.+. .+...+.
T Consensus 55 ~~~~l~G~~GtGKT~la~-~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA-AIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHH-HHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 569999999999998633 3444443
No 144
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.41 E-value=0.12 Score=49.39 Aligned_cols=38 Identities=21% Similarity=0.411 Sum_probs=25.1
Q ss_pred cccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEE
Q 011065 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMF 299 (494)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (494)
....++|+||+|.+.. .....+..++...+....+++.
T Consensus 109 ~~~~viiiDe~~~l~~-~~~~~L~~~le~~~~~~~~il~ 146 (340)
T 1sxj_C 109 KGFKLIILDEADAMTN-AAQNALRRVIERYTKNTRFCVL 146 (340)
T ss_dssp CSCEEEEETTGGGSCH-HHHHHHHHHHHHTTTTEEEEEE
T ss_pred CCceEEEEeCCCCCCH-HHHHHHHHHHhcCCCCeEEEEE
Confidence 4578999999998743 3344556666666655555544
No 145
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.27 E-value=0.12 Score=50.07 Aligned_cols=18 Identities=39% Similarity=0.516 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHh
Q 011065 157 GSDILARAKNGTGKTAAF 174 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (494)
+..+++.||+|+|||+..
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 356999999999999874
No 146
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.06 E-value=0.053 Score=52.46 Aligned_cols=39 Identities=13% Similarity=0.125 Sum_probs=22.3
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEE
Q 011065 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMF 299 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (494)
.....+|||||+|.+... ....+.+++...+.+..+|+.
T Consensus 117 ~~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il~ 155 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLA 155 (373)
T ss_dssp SSSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEEE
T ss_pred cCCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEEE
Confidence 445789999999987432 233444445544444433333
No 147
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.05 E-value=0.038 Score=53.76 Aligned_cols=55 Identities=16% Similarity=0.125 Sum_probs=32.2
Q ss_pred cCCCCcccccCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHH
Q 011065 116 ATKGNEFEDYFLKRELLMGIFEKG---FERPSPIQEESIPIALTGSDILARAKNGTGKTAA 173 (494)
Q Consensus 116 ~~~~~~~~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~ 173 (494)
..+.-+|.+.+=-++..+.+.+.= +..|.-++...+ ..-+.+++.||+|+|||+.
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHH
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHH
Confidence 345567888876666767666531 111111111111 1135699999999999986
No 148
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.00 E-value=0.038 Score=55.07 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=14.3
Q ss_pred cEEEEccCCCchhHHh
Q 011065 159 DILARAKNGTGKTAAF 174 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (494)
.+++.||+|+|||+.+
T Consensus 52 ~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLA 67 (447)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 5899999999999863
No 149
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.92 E-value=0.018 Score=56.91 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=34.0
Q ss_pred cCCCCcccccCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHH
Q 011065 116 ATKGNEFEDYFLKRELLMGIFEKG---FERPSPIQEESIPIALTGSDILARAKNGTGKTAA 173 (494)
Q Consensus 116 ~~~~~~~~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~ 173 (494)
..+..+|.+.+--++..+.+.+.= +..|.-++...++ ..+.+++.||+|||||+.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHH
Confidence 455667999988777777776431 1112222211111 135699999999999986
No 150
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.84 E-value=0.1 Score=51.02 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHh
Q 011065 157 GSDILARAKNGTGKTAAF 174 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (494)
.+.+++.||+|+|||+.+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 357999999999999863
No 151
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.82 E-value=0.089 Score=45.63 Aligned_cols=134 Identities=14% Similarity=0.107 Sum_probs=68.2
Q ss_pred cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHH-HHHHHHHHHHHHhccCCcEEEEEECCCC----h-HHHH
Q 011065 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE-LALQTSQVCKELGKHLNIQVMVTTGGTS----L-KDDI 232 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~-la~q~~~~~~~~~~~~~~~~~~~~g~~~----~-~~~~ 232 (494)
.+++...+|.|||++++--++..+..+ .+|+|+.=.+. ....-...+..+ ++.+...--+.. . .++.
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G---~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHG---KNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTT---CCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCGGGHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCCCCcHHHH
Confidence 489999999999999777777666543 37788742110 000001122222 222222111111 0 0000
Q ss_pred HHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCC--cHHHHHHHHHHCCCCCcEEEEEeecCcchHHH
Q 011065 233 MRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE--FQPSVEQLIRFLPANRQILMFSATFPVTVKDF 310 (494)
Q Consensus 233 ~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~--~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~ 310 (494)
... -..+...... ..-..+++||+||+-..+..+ -.+.+..++...+...-+|+.+--.|..+.+.
T Consensus 103 ~~a----------~~~l~~a~~~--l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~ 170 (196)
T 1g5t_A 103 AAC----------MAVWQHGKRM--LADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDL 170 (196)
T ss_dssp HHH----------HHHHHHHHHH--TTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHH
T ss_pred HHH----------HHHHHHHHHH--HhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHh
Confidence 000 1111111111 112679999999996533322 24566777888877777777666666555555
Q ss_pred H
Q 011065 311 K 311 (494)
Q Consensus 311 ~ 311 (494)
+
T Consensus 171 A 171 (196)
T 1g5t_A 171 A 171 (196)
T ss_dssp C
T ss_pred C
Confidence 3
No 152
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.81 E-value=0.052 Score=51.30 Aligned_cols=38 Identities=13% Similarity=0.318 Sum_probs=23.5
Q ss_pred ccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 011065 262 DCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (494)
Q Consensus 262 ~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 300 (494)
+..+|||||+|.+... ....+..++...+.+..+|+.|
T Consensus 107 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHH-HHHHHHHHHhccCCCceEEEEe
Confidence 4789999999987432 2333445555555555555544
No 153
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.75 E-value=0.14 Score=46.92 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.+..+++.|++|+|||+.
T Consensus 28 ~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELI 45 (265)
T ss_dssp SCSCEEEECCTTSCHHHH
T ss_pred CCCCEEEECCCCCcHHHH
Confidence 456799999999999986
No 154
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.66 E-value=0.12 Score=48.63 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCchhHHhH
Q 011065 157 GSDILARAKNGTGKTAAFC 175 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (494)
++.+++.||+|+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999998643
No 155
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.57 E-value=0.15 Score=45.93 Aligned_cols=37 Identities=16% Similarity=0.065 Sum_probs=25.1
Q ss_pred cCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc
Q 011065 156 TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (494)
.|.-+++.|++|+|||+.....+....... ..++++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~---~~v~~~~ 58 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMG---EPGIYVA 58 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEE
Confidence 345689999999999997555444444322 2567766
No 156
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.54 E-value=0.077 Score=54.04 Aligned_cols=41 Identities=15% Similarity=0.206 Sum_probs=26.3
Q ss_pred cccceEEecccccccCCC--cHHHHHHHHHHCCCCCcEEEEEeec
Q 011065 261 KDCSMLVMDEADKLLSPE--FQPSVEQLIRFLPANRQILMFSATF 303 (494)
Q Consensus 261 ~~~~~iViDEah~~~~~~--~~~~~~~~~~~~~~~~~~i~~SATl 303 (494)
....+|||||+|.+.... ....+..++... ...+|+++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 456799999999886533 224444555442 45577777764
No 157
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.48 E-value=0.059 Score=51.21 Aligned_cols=49 Identities=24% Similarity=0.220 Sum_probs=28.7
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-----cCCcEEEEccCCCchhHHh
Q 011065 120 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIAL-----TGSDILARAKNGTGKTAAF 174 (494)
Q Consensus 120 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~-----~~~~~ii~~~TGsGKT~~~ 174 (494)
..|.++.-.+...+.+.+.-. .|. ..+.+. ..+.+++.||+|+|||+.+
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 457777666667666654210 010 011111 1245999999999999863
No 158
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.46 E-value=0.089 Score=49.49 Aligned_cols=41 Identities=7% Similarity=0.200 Sum_probs=24.1
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEee
Q 011065 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSAT 302 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 302 (494)
.....+|||||||.|.... ...+.+.+..-++...+| +.++
T Consensus 80 ~~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fI-l~t~ 120 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIV-LNTR 120 (305)
T ss_dssp SSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEE-EEES
T ss_pred cCCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEE-EEEC
Confidence 4568999999999984322 333444455444444444 4444
No 159
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.38 E-value=0.053 Score=53.61 Aligned_cols=55 Identities=22% Similarity=0.169 Sum_probs=32.9
Q ss_pred cCCCCcccccCCCHHHHHHHHHCCCCCCcHHH-HHHHHHH--hcCCcEEEEccCCCchhHH
Q 011065 116 ATKGNEFEDYFLKRELLMGIFEKGFERPSPIQ-EESIPIA--LTGSDILARAKNGTGKTAA 173 (494)
Q Consensus 116 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q-~~~i~~~--~~~~~~ii~~~TGsGKT~~ 173 (494)
..+.-+|.+.+--++..+.+.+.= . .|.. -+.+..+ .--+.+++.||+|+|||+.
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V-~--~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVV-E--LPLLSPERFATLGIDPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHT-H--HHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHH
T ss_pred CCCCCCHHHhccHHHHHHHHHHHH-H--HHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHH
Confidence 455567888877777777776531 0 1111 1111111 1235699999999999986
No 160
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.34 E-value=0.083 Score=47.13 Aligned_cols=37 Identities=19% Similarity=0.158 Sum_probs=22.9
Q ss_pred cCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc
Q 011065 156 TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (494)
.|.-+++.|++|+|||+.....+.......+ .++++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~---~v~~~~ 58 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGD---PCIYVT 58 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTC---CEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCC---eEEEEE
Confidence 4556889999999999864443323322222 456655
No 161
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.25 E-value=0.055 Score=52.94 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=32.6
Q ss_pred ccCCCCcccccCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHH
Q 011065 115 TATKGNEFEDYFLKRELLMGIFEK---GFERPSPIQEESIPIALTGSDILARAKNGTGKTAA 173 (494)
Q Consensus 115 ~~~~~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~ 173 (494)
...+..+|.+.+=-++..+.+.+. -+..|--++...++ --+.+++.||+|+|||+.
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHH
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHH
Confidence 345566788887666666666542 01112112211111 125699999999999986
No 162
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.21 E-value=0.068 Score=50.76 Aligned_cols=17 Identities=35% Similarity=0.339 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchhHHh
Q 011065 158 SDILARAKNGTGKTAAF 174 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (494)
+.+++.||+|+|||+.+
T Consensus 46 ~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLA 62 (322)
T ss_dssp SEEEEESSSSSCHHHHH
T ss_pred ceEEEECCCCccHHHHH
Confidence 56999999999999863
No 163
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.20 E-value=0.096 Score=48.93 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHh
Q 011065 157 GSDILARAKNGTGKTAAF 174 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (494)
.+.+++.||+|+|||+.+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 456999999999999863
No 164
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.05 E-value=0.2 Score=53.46 Aligned_cols=77 Identities=12% Similarity=0.123 Sum_probs=66.2
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHc----CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcC-cccccCCCCCCCEEE
Q 011065 356 QINQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD-LFTRGIDIQAVNVVI 430 (494)
Q Consensus 356 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~-~~~~Gidi~~v~~VI 430 (494)
...+++|.+|++.-+.+.++.+.+. ++.+..+||+++..++..+++...+|..+|+|+|. .+...+.+.++.+||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 3468999999999999888877664 78999999999999999999999999999999996 445678888999888
Q ss_pred Ec
Q 011065 431 NF 432 (494)
Q Consensus 431 ~~ 432 (494)
.-
T Consensus 496 ID 497 (780)
T 1gm5_A 496 ID 497 (780)
T ss_dssp EE
T ss_pred ec
Confidence 43
No 165
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.05 E-value=0.051 Score=53.65 Aligned_cols=55 Identities=22% Similarity=0.158 Sum_probs=31.2
Q ss_pred cCCCCcccccCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHH
Q 011065 116 ATKGNEFEDYFLKRELLMGIFEKG---FERPSPIQEESIPIALTGSDILARAKNGTGKTAA 173 (494)
Q Consensus 116 ~~~~~~~~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~ 173 (494)
..+..+|.+.+--++..+.+.+.= +..|--++...+ .--+.+++.||+|||||+.
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHH
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHH
Confidence 355567888876666666665420 011111111110 1125699999999999986
No 166
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.86 E-value=0.07 Score=52.56 Aligned_cols=55 Identities=18% Similarity=0.065 Sum_probs=30.8
Q ss_pred cCCCCcccccCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHH
Q 011065 116 ATKGNEFEDYFLKRELLMGIFEK---GFERPSPIQEESIPIALTGSDILARAKNGTGKTAA 173 (494)
Q Consensus 116 ~~~~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~ 173 (494)
..+..+|.+.+--++..+.+.+. .+..|--++...+ ...+.+++.||+|+|||+.
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHH
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHH
Confidence 34556788886666666666542 0001111111111 1125599999999999986
No 167
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.84 E-value=0.26 Score=44.85 Aligned_cols=17 Identities=29% Similarity=0.251 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhHHh
Q 011065 158 SDILARAKNGTGKTAAF 174 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (494)
+.+++.||+|+|||+.+
T Consensus 40 ~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45899999999999863
No 168
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.84 E-value=0.066 Score=50.72 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchhHHh
Q 011065 158 SDILARAKNGTGKTAAF 174 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (494)
..+++.||+|+|||+.+
T Consensus 39 ~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCEEECCTTCCCHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 56999999999999863
No 169
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.82 E-value=0.19 Score=50.59 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=26.6
Q ss_pred cceEEecccccccCCC----------cHHHHHHHHHHCCCCCcEEEEEeecC
Q 011065 263 CSMLVMDEADKLLSPE----------FQPSVEQLIRFLPANRQILMFSATFP 304 (494)
Q Consensus 263 ~~~iViDEah~~~~~~----------~~~~~~~~~~~~~~~~~~i~~SATl~ 304 (494)
.++|+|||+|.+.... ....+..++..+.....++++.||-.
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~ 349 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR 349 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESC
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCC
Confidence 4689999999876421 12333444455555667788888844
No 170
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.80 E-value=0.36 Score=45.05 Aligned_cols=44 Identities=16% Similarity=0.270 Sum_probs=24.3
Q ss_pred cccceEEecccccccCC-CcHHHHHHHHHHCCCCCcEEEEEeecC
Q 011065 261 KDCSMLVMDEADKLLSP-EFQPSVEQLIRFLPANRQILMFSATFP 304 (494)
Q Consensus 261 ~~~~~iViDEah~~~~~-~~~~~~~~~~~~~~~~~~~i~~SATl~ 304 (494)
.++++||+||.-.+... .....+..+...+.++.-++.+.++..
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~ 223 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG 223 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc
Confidence 56899999999543221 123344444444444443455666643
No 171
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.77 E-value=0.041 Score=51.89 Aligned_cols=16 Identities=44% Similarity=0.538 Sum_probs=14.2
Q ss_pred cEEEEccCCCchhHHh
Q 011065 159 DILARAKNGTGKTAAF 174 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (494)
.+++.||+|+|||+.+
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 4999999999999863
No 172
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.77 E-value=0.3 Score=47.75 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=13.7
Q ss_pred cEEE--EccCCCchhHHh
Q 011065 159 DILA--RAKNGTGKTAAF 174 (494)
Q Consensus 159 ~~ii--~~~TGsGKT~~~ 174 (494)
.++| .|+.|+|||+..
T Consensus 52 ~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEECTTCCSSSHHHHH
T ss_pred EEEEeCcCcCCCCHHHHH
Confidence 4788 899999999874
No 173
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.58 E-value=0.21 Score=49.75 Aligned_cols=37 Identities=27% Similarity=0.142 Sum_probs=25.2
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc
Q 011065 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (494)
|.-++|.|++|+|||+..+..+....... +..|+++.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~--g~~vl~~s 236 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKE--GVGVGIYS 236 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT--CCCEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEE
Confidence 34489999999999987665555544322 23577776
No 174
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.54 E-value=0.12 Score=49.75 Aligned_cols=17 Identities=41% Similarity=0.413 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchhHHh
Q 011065 158 SDILARAKNGTGKTAAF 174 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (494)
+.+++.||+|+|||+.+
T Consensus 85 ~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCEEEECSTTSCHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 46999999999999864
No 175
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.41 E-value=0.28 Score=43.99 Aligned_cols=40 Identities=20% Similarity=-0.041 Sum_probs=24.9
Q ss_pred cCCcEEEEccCCCchhHHhHHHHHHhhhcC---CCceEEEEEc
Q 011065 156 TGSDILARAKNGTGKTAAFCIPALEKIDQD---NNVIQVVILV 195 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~---~~~~~~lil~ 195 (494)
.|.-+++.||+|+|||+.....+...+... +....++++.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 345689999999999997655444333211 1123566665
No 176
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.27 E-value=0.68 Score=43.84 Aligned_cols=53 Identities=11% Similarity=0.184 Sum_probs=34.7
Q ss_pred ccceEEeccccccc-CCCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhh
Q 011065 262 DCSMLVMDEADKLL-SPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKY 314 (494)
Q Consensus 262 ~~~~iViDEah~~~-~~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~ 314 (494)
.++++++|.+-+.. ...+...+..+.+.+.++..++++.+|...+..+....+
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 46788899887643 234555666666666667777888888665555555444
No 177
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.19 E-value=0.2 Score=49.95 Aligned_cols=37 Identities=27% Similarity=0.200 Sum_probs=25.2
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc
Q 011065 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (494)
|.-++|.|++|+|||+..+..+.......+ ..|+++.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g--~~Vl~~s 239 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTN--ENVAIFS 239 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSS--CCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCC--CcEEEEE
Confidence 455899999999999876555554443322 2577776
No 178
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.05 E-value=0.27 Score=45.90 Aligned_cols=117 Identities=17% Similarity=0.207 Sum_probs=57.2
Q ss_pred cCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHH
Q 011065 156 TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIM 233 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 233 (494)
.++.+++.|++|+|||+.....+.......+ .+++++. +.+..+. +.+..++...++.+.. .
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G--~~V~lv~~D~~r~~a~---eqL~~~~~~~gl~~~~---~-------- 167 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH--KKIAFITTDTYRIAAV---EQLKTYAELLQAPLEV---C-------- 167 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC--CCEEEEECCCSSTTHH---HHHHHHHTTTTCCCCB---C--------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CEEEEEecCcccchHH---HHHHHHHHhcCCCeEe---c--------
Confidence 3456889999999999975433322221222 2455444 4444332 2233333333322110 0
Q ss_pred HhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCC---CCCcEEEEEeecC
Q 011065 234 RLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLP---ANRQILMFSATFP 304 (494)
Q Consensus 234 ~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~---~~~~~i~~SATl~ 304 (494)
.++..+...+.. +.++++||+|.+-... .-...+..+...+. ....+++++||..
T Consensus 168 ----------~~~~~l~~al~~----~~~~dlvIiDT~G~~~--~~~~~~~el~~~l~~~~~~~~~lVl~at~~ 225 (296)
T 2px0_A 168 ----------YTKEEFQQAKEL----FSEYDHVFVDTAGRNF--KDPQYIDELKETIPFESSIQSFLVLSATAK 225 (296)
T ss_dssp ----------SSHHHHHHHHHH----GGGSSEEEEECCCCCT--TSHHHHHHHHHHSCCCTTEEEEEEEETTBC
T ss_pred ----------CCHHHHHHHHHH----hcCCCEEEEeCCCCCh--hhHHHHHHHHHHHhhcCCCeEEEEEECCCC
Confidence 122333333332 3678999999665432 22334444444443 2233667767744
No 179
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.05 E-value=0.1 Score=51.93 Aligned_cols=54 Identities=19% Similarity=0.054 Sum_probs=29.3
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHH-HHHH-HHhcCCcEEEEccCCCchhHHh
Q 011065 118 KGNEFEDYFLKRELLMGIFEKGFERPSPIQE-ESIP-IALTGSDILARAKNGTGKTAAF 174 (494)
Q Consensus 118 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~-~~i~-~~~~~~~~ii~~~TGsGKT~~~ 174 (494)
+...|.++.-.+...+.+...-. .|... +.+. .....+.+++.||+|+|||+.+
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 34567777666666666654200 00000 0000 0112356999999999999863
No 180
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.99 E-value=0.11 Score=49.53 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=25.5
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc
Q 011065 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (494)
|.-++|.|++|+|||+.++..+..... .+..|+|++
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fS 81 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFS 81 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEe
Confidence 344899999999999876655555444 233678877
No 181
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.97 E-value=0.47 Score=44.45 Aligned_cols=19 Identities=37% Similarity=0.352 Sum_probs=15.1
Q ss_pred CcEEEEccCCCchhHHhHH
Q 011065 158 SDILARAKNGTGKTAAFCI 176 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~ 176 (494)
+.+++.|++|+|||+....
T Consensus 105 ~vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHH
Confidence 3478999999999987443
No 182
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.12 E-value=0.4 Score=44.21 Aligned_cols=26 Identities=19% Similarity=0.114 Sum_probs=19.8
Q ss_pred HhcCCcEEEEccCCCchhHHhHHHHH
Q 011065 154 ALTGSDILARAKNGTGKTAAFCIPAL 179 (494)
Q Consensus 154 ~~~~~~~ii~~~TGsGKT~~~~~~~l 179 (494)
+..|.-++|.|++|+|||+.....+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 44567799999999999987555443
No 183
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.06 E-value=1.4 Score=45.68 Aligned_cols=22 Identities=27% Similarity=0.234 Sum_probs=18.3
Q ss_pred HHhcCCcEEEEccCCCchhHHh
Q 011065 153 IALTGSDILARAKNGTGKTAAF 174 (494)
Q Consensus 153 ~~~~~~~~ii~~~TGsGKT~~~ 174 (494)
.+..+..+++.||+|+|||+.+
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHH
Confidence 4456778999999999999863
No 184
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=92.00 E-value=0.53 Score=46.13 Aligned_cols=78 Identities=14% Similarity=0.199 Sum_probs=64.8
Q ss_pred CCCcEEEEecChhHHHHHHHHHHH---cCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCccc----ccCCCCCCCE
Q 011065 356 QINQSIIFCNSVNRVELLAKKITE---LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFT----RGIDIQAVNV 428 (494)
Q Consensus 356 ~~~~~lVF~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~----~Gidi~~v~~ 428 (494)
...++||.+|+++-+.++++.+.+ .++.+..++|+.+..++...++.+..|..+|+|+|.-.- .-++..++.+
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 556899999999999999999998 578999999999998888888889999899999996311 1256678888
Q ss_pred EEEcC
Q 011065 429 VINFD 433 (494)
Q Consensus 429 VI~~~ 433 (494)
||.-.
T Consensus 143 iViDE 147 (414)
T 3oiy_A 143 VFVDD 147 (414)
T ss_dssp EEESC
T ss_pred EEEeC
Confidence 88533
No 185
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.35 E-value=0.32 Score=43.82 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=17.8
Q ss_pred cCCcEEEEccCCCchhHHhHHHH
Q 011065 156 TGSDILARAKNGTGKTAAFCIPA 178 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~ 178 (494)
.|.-+.+.||+|||||+.+-..+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 45668999999999999754333
No 186
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=91.28 E-value=0.13 Score=43.75 Aligned_cols=57 Identities=7% Similarity=0.111 Sum_probs=41.4
Q ss_pred cHHHHHHHHHHhcCC--cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHH
Q 011065 144 SPIQEESIPIALTGS--DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELAL 202 (494)
Q Consensus 144 ~~~Q~~~i~~~~~~~--~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~ 202 (494)
.+-|..++..++... -.+|.+.-|++|+...+.-++......+ .++.+|+|+.....
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~G--r~V~vLAp~~~s~~ 94 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQG--REVQIIAADRRSQM 94 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTT--CCEEEECSTTHHHH
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcC--eEEEEEcCchHHHH
Confidence 356888888887554 3788999999999986555555444443 47999999976653
No 187
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.26 E-value=1.3 Score=43.40 Aligned_cols=43 Identities=19% Similarity=0.145 Sum_probs=24.7
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc--CcHHHHH
Q 011065 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELAL 202 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~ 202 (494)
++.+++.|++|+|||+.....+. .+...+ .+++++. +.+..+.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~-~l~~~g--~~Vllvd~D~~r~aa~ 142 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL-YYKGKG--RRPLLVAADTQRPAAR 142 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH-HHHTTT--CCEEEEECCSSCHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-HHHHcC--CeEEEeeccccCchhH
Confidence 34477789999999987443332 222222 2455554 5555553
No 188
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.17 E-value=0.21 Score=49.34 Aligned_cols=35 Identities=20% Similarity=0.164 Sum_probs=22.2
Q ss_pred CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc
Q 011065 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (494)
..++++|++|+|||+.+...+.... .. +.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~-~~--G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ-KR--GLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH-HH--HCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-Hc--CCeEEEEe
Confidence 3588999999999987544333322 22 23566665
No 189
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=90.93 E-value=3.6 Score=38.79 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=24.1
Q ss_pred cceEEecccccccC---CCcHHHHHHHHHHCCCCCcEEEEEee
Q 011065 263 CSMLVMDEADKLLS---PEFQPSVEQLIRFLPANRQILMFSAT 302 (494)
Q Consensus 263 ~~~iViDEah~~~~---~~~~~~~~~~~~~~~~~~~~i~~SAT 302 (494)
--+|||||+|.+.. ..+...+..+.... .+..+| ++++
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i-~~g~ 178 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNL-KRIKFI-MSGS 178 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHC-TTEEEE-EEES
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcC-CCeEEE-EEcC
Confidence 44899999998753 45666676666654 244444 4444
No 190
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=90.85 E-value=0.18 Score=50.51 Aligned_cols=17 Identities=41% Similarity=0.407 Sum_probs=14.7
Q ss_pred CcEEEEccCCCchhHHh
Q 011065 158 SDILARAKNGTGKTAAF 174 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (494)
+.+++.||+|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999863
No 191
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.47 E-value=1.9 Score=43.29 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=24.7
Q ss_pred cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc--CcHHHHH
Q 011065 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELAL 202 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~ 202 (494)
.++++|++|+|||+.+...+. ++...+ .+++++. |.+..+.
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~-~l~~~G--~kVllVd~D~~r~aa~ 145 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAY-YYQRKG--WKTCLICADTFRAGAF 145 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-HHHHTT--CCEEEEEECCSSSHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHhCC--CeEEEEeccccchhHH
Confidence 477899999999997544333 333322 2455555 4455553
No 192
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=90.12 E-value=0.26 Score=50.42 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCchhHHh
Q 011065 156 TGSDILARAKNGTGKTAAF 174 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~ 174 (494)
.+..+++.||+|+|||+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667999999999999863
No 193
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.83 E-value=0.31 Score=51.96 Aligned_cols=16 Identities=44% Similarity=0.486 Sum_probs=14.4
Q ss_pred CcEEEEccCCCchhHH
Q 011065 158 SDILARAKNGTGKTAA 173 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~ 173 (494)
+.+++.||+|+|||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4699999999999986
No 194
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.82 E-value=1.1 Score=43.54 Aligned_cols=40 Identities=15% Similarity=-0.041 Sum_probs=25.5
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhc---CCCceEEEEEcC
Q 011065 157 GSDILARAKNGTGKTAAFCIPALEKIDQ---DNNVIQVVILVP 196 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~---~~~~~~~lil~P 196 (494)
|.-+.|.||+|||||+.....++..+.. .+.+..++++.-
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 3458899999999998755444443332 112346777763
No 195
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=89.69 E-value=1.5 Score=40.83 Aligned_cols=43 Identities=26% Similarity=0.153 Sum_probs=24.5
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc--CcHHHHH
Q 011065 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELAL 202 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~ 202 (494)
++.+++.|++|+|||+.....+... ...+ .+++++. +.+..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~-~~~g--~~v~l~~~D~~r~~a~ 142 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY-KKKG--FKVGLVGADVYRPAAL 142 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH-HHTT--CCEEEEECCCSSSHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HHCC--CeEEEEecCCCCHHHH
Confidence 3347788999999998754433222 2222 2455554 5554443
No 196
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=89.63 E-value=1.2 Score=49.90 Aligned_cols=76 Identities=9% Similarity=0.126 Sum_probs=64.9
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHc----CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcC-cccccCCCCCCCEEE
Q 011065 356 QINQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD-LFTRGIDIQAVNVVI 430 (494)
Q Consensus 356 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~-~~~~Gidi~~v~~VI 430 (494)
...+++|.||+..-+.+.++.+.+. ++.+..+++..+..++..+++....|..+|+|+|. .+...+.+.++.+||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 4568999999999999988888754 57889999999999999999999999999999995 556668888888877
Q ss_pred E
Q 011065 431 N 431 (494)
Q Consensus 431 ~ 431 (494)
.
T Consensus 731 i 731 (1151)
T 2eyq_A 731 V 731 (1151)
T ss_dssp E
T ss_pred E
Confidence 3
No 197
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=89.53 E-value=0.44 Score=50.94 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=14.2
Q ss_pred cEEEEccCCCchhHHh
Q 011065 159 DILARAKNGTGKTAAF 174 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (494)
.+++.||||+|||..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4999999999999864
No 198
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=89.38 E-value=1.1 Score=48.61 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhHHh
Q 011065 158 SDILARAKNGTGKTAAF 174 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (494)
.+++++||+|+|||+.+
T Consensus 192 ~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCEEEECTTSCHHHHH
T ss_pred CceEEEcCCCCCHHHHH
Confidence 46999999999999863
No 199
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=89.26 E-value=2.4 Score=38.16 Aligned_cols=71 Identities=10% Similarity=0.143 Sum_probs=53.5
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc----CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCc-----c--cccCCCCC
Q 011065 357 INQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-----F--TRGIDIQA 425 (494)
Q Consensus 357 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~-----~--~~Gidi~~ 425 (494)
..++||.+|+++.+.++++.+.+. ++.+..++|+.+...+...+ .+..+|+|+|.- + ...+++.+
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 457999999999999998887765 78899999998766554333 246789999952 1 14567888
Q ss_pred CCEEEE
Q 011065 426 VNVVIN 431 (494)
Q Consensus 426 v~~VI~ 431 (494)
+.+||.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 888874
No 200
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.16 E-value=0.44 Score=55.68 Aligned_cols=38 Identities=11% Similarity=0.004 Sum_probs=27.8
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCc
Q 011065 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPT 197 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~ 197 (494)
++.+++.||+|+|||+.+...+.+.... +.+++++..-
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~---G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAE 1464 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEEcc
Confidence 5779999999999999866665555433 3367777744
No 201
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=89.10 E-value=2.8 Score=41.31 Aligned_cols=43 Identities=19% Similarity=0.235 Sum_probs=25.9
Q ss_pred cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc--CcHHHHHH
Q 011065 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQ 203 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q 203 (494)
.++++|++|+|||+...-.+.. +... .+.+++++. |.+..+.+
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~-l~~~-~G~kVllvd~D~~r~~a~~ 146 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKF-LREK-HKKKVLVVSADVYRPAAIK 146 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH-HHHT-SCCCEEEEECCCSSTTHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHHh-cCCeEEEEecCCCCccHHH
Confidence 4777899999999975443333 3332 123566655 66655543
No 202
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.61 E-value=0.31 Score=51.92 Aligned_cols=53 Identities=19% Similarity=0.159 Sum_probs=30.3
Q ss_pred CCCcccccCCCHHHHHHHHHCC-C--CCCcHHHHHHHHHHhcCCcEEEEccCCCchhHH
Q 011065 118 KGNEFEDYFLKRELLMGIFEKG-F--ERPSPIQEESIPIALTGSDILARAKNGTGKTAA 173 (494)
Q Consensus 118 ~~~~~~~~~l~~~l~~~l~~~~-~--~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~ 173 (494)
+...|.+.+.-++..+.+.+.= + ..+..+.... +...+.+++.||+|+|||+.
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHH
Confidence 3445777777777777776541 1 1111110000 01124599999999999976
No 203
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=88.42 E-value=1.9 Score=37.82 Aligned_cols=72 Identities=8% Similarity=0.139 Sum_probs=54.7
Q ss_pred CcEEEEecChhHHHHHHHHHHHc-----CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCc------ccccCCCCCC
Q 011065 358 NQSIIFCNSVNRVELLAKKITEL-----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL------FTRGIDIQAV 426 (494)
Q Consensus 358 ~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~------~~~Gidi~~v 426 (494)
.++||.||+++-+.++++.+.+. ++.+..++|+.+...+... +..+..+|+|+|.- -...+++.++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 48999999999999999888775 6789999999887655443 34566789999952 1234677888
Q ss_pred CEEEEc
Q 011065 427 NVVINF 432 (494)
Q Consensus 427 ~~VI~~ 432 (494)
++||.-
T Consensus 160 ~~lViD 165 (220)
T 1t6n_A 160 KHFILD 165 (220)
T ss_dssp CEEEEE
T ss_pred CEEEEc
Confidence 888753
No 204
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.41 E-value=0.75 Score=45.14 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=17.6
Q ss_pred CcEEEEccCCCchhHHhHHHHHHhhh
Q 011065 158 SDILARAKNGTGKTAAFCIPALEKID 183 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~ 183 (494)
.-++|.||||||||+. +..++..+.
T Consensus 168 gii~I~GpnGSGKTTl-L~allg~l~ 192 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTT-LYAGLQELN 192 (418)
T ss_dssp EEEEEECSTTSCHHHH-HHHHHHHHC
T ss_pred CeEEEECCCCCCHHHH-HHHHHhhcC
Confidence 3488999999999996 333444443
No 205
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=88.40 E-value=1.6 Score=46.87 Aligned_cols=18 Identities=39% Similarity=0.405 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.++.+++.||+|||||+.
T Consensus 237 ~~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCCEEEECSCTTSSHHHH
T ss_pred CCCeEEEECcCCCCHHHH
Confidence 345699999999999986
No 206
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.38 E-value=0.54 Score=41.31 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=27.6
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHh
Q 011065 140 FERPSPIQEESIPIALTGSDILARAKNGTGKTAAF 174 (494)
Q Consensus 140 ~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~ 174 (494)
+..-+.-|..++..+..|.-+.+.||.|||||+.+
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 33444556778888888888999999999999864
No 207
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=87.52 E-value=2.6 Score=34.97 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=50.4
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHH---h-cCCCeEEEEchHHHHHhHhcCCccccccc
Q 011065 189 IQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMR---L-YQPVHLLVGTPGRILDLSKKGVCILKDCS 264 (494)
Q Consensus 189 ~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~ 264 (494)
.++||.|+++..+..+.+.+... ++.+..++|+....+.... + .....|+|+|. .+.. ..++..++
T Consensus 36 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~-Gld~~~~~ 105 (163)
T 2hjv_A 36 DSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAAR-GIDIENIS 105 (163)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTT-TCCCSCCS
T ss_pred CcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc-CCchhcCC
Confidence 37999999999988887777654 5778888988765443222 2 24578999994 2233 45577888
Q ss_pred eEEeccc
Q 011065 265 MLVMDEA 271 (494)
Q Consensus 265 ~iViDEa 271 (494)
+||.-+.
T Consensus 106 ~Vi~~~~ 112 (163)
T 2hjv_A 106 LVINYDL 112 (163)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 8876443
No 208
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=87.12 E-value=0.6 Score=47.19 Aligned_cols=30 Identities=10% Similarity=0.016 Sum_probs=21.1
Q ss_pred cHHHHHHHHH-HhcCCcEEEEccCCCchhHH
Q 011065 144 SPIQEESIPI-ALTGSDILARAKNGTGKTAA 173 (494)
Q Consensus 144 ~~~Q~~~i~~-~~~~~~~ii~~~TGsGKT~~ 173 (494)
.+.....+.. +..+..++++||||||||+.
T Consensus 246 ~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 246 PSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 3344444443 34667799999999999986
No 209
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=87.01 E-value=2.5 Score=42.23 Aligned_cols=16 Identities=44% Similarity=0.544 Sum_probs=13.8
Q ss_pred cEEEEccCCCchhHHh
Q 011065 159 DILARAKNGTGKTAAF 174 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (494)
.+.++|++|||||+..
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 4778999999999964
No 210
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=86.88 E-value=2.6 Score=42.06 Aligned_cols=51 Identities=18% Similarity=0.207 Sum_probs=38.0
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhc
Q 011065 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGK 213 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~ 213 (494)
+....+.|-||||||+...- +.. ..+ ..+|||||+...|.++++.++.+..
T Consensus 14 ~~~~~l~g~~gs~ka~~~a~-l~~---~~~--~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 14 GEQRLLGELTGAACATLVAE-IAE---RHA--GPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TCEEEEECCCTTHHHHHHHH-HHH---HSS--SCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCeEEEeCCCchHHHHHHHH-HHH---HhC--CCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 45589999999999986221 221 111 2589999999999999999998754
No 211
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=86.74 E-value=2.7 Score=37.44 Aligned_cols=71 Identities=6% Similarity=0.025 Sum_probs=53.5
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc----CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCc-----c-cccCCCCCC
Q 011065 357 INQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-----F-TRGIDIQAV 426 (494)
Q Consensus 357 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~-----~-~~Gidi~~v 426 (494)
...+||.+|+++-+.++++.+.+. ++.+..++|+.+...+...+.. ..+|+|+|.- + ...+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 457999999999999888777654 7889999999887766554432 4689999961 2 234678888
Q ss_pred CEEEE
Q 011065 427 NVVIN 431 (494)
Q Consensus 427 ~~VI~ 431 (494)
.+||.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88884
No 212
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=86.68 E-value=2.1 Score=44.13 Aligned_cols=60 Identities=17% Similarity=0.273 Sum_probs=54.8
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHh--hcCCccEEEEcC
Q 011065 356 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDF--RNGACRNLVCTD 415 (494)
Q Consensus 356 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f--~~g~~~vlvaT~ 415 (494)
..+.+||.+|++.-+.+..+.|.+.++.+..++|+++..++..++..+ ..+..+||++|+
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 357899999999999999999999999999999999999998888887 578899999997
No 213
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=86.67 E-value=1.1 Score=42.86 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=18.1
Q ss_pred CcEEEEccCCCchhHHhHHHHHHhhhc
Q 011065 158 SDILARAKNGTGKTAAFCIPALEKIDQ 184 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~ 184 (494)
..+++.||||||||+. +..++..+..
T Consensus 124 g~i~I~GptGSGKTTl-L~~l~g~~~~ 149 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTT-LAAMLDYLNN 149 (356)
T ss_dssp EEEEEECSTTSCHHHH-HHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHH-HHHHHhcccC
Confidence 3589999999999986 3334444433
No 214
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=86.49 E-value=1.6 Score=38.61 Aligned_cols=70 Identities=13% Similarity=0.162 Sum_probs=52.6
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc-----CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCc-c-----cccCCCCC
Q 011065 357 INQSIIFCNSVNRVELLAKKITEL-----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-F-----TRGIDIQA 425 (494)
Q Consensus 357 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~-~-----~~Gidi~~ 425 (494)
..++||.+|+++-+.++++.+.+. ++.+..++|+.+...+...+ ...+|+|+|.- + ...+++.+
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccccc
Confidence 458999999999999999988875 57788999998876654433 25789999962 1 23456777
Q ss_pred CCEEEE
Q 011065 426 VNVVIN 431 (494)
Q Consensus 426 v~~VI~ 431 (494)
+.+||.
T Consensus 167 ~~~lVi 172 (230)
T 2oxc_A 167 IRLFIL 172 (230)
T ss_dssp CCEEEE
T ss_pred CCEEEe
Confidence 888774
No 215
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=86.48 E-value=1.5 Score=44.45 Aligned_cols=74 Identities=8% Similarity=0.111 Sum_probs=61.7
Q ss_pred CCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCc-c-----cccCCCCCCCEEE
Q 011065 357 INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-F-----TRGIDIQAVNVVI 430 (494)
Q Consensus 357 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~-~-----~~Gidi~~v~~VI 430 (494)
.+.+||.+|++.-+.+..+.|.+.++.+..+|+..+..++..++.....|..+|+++|.- + ...+...++.+||
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vV 144 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLA 144 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEE
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEE
Confidence 478999999999999999999999999999999999999999999999999999999952 1 1223345566666
No 216
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=86.38 E-value=0.68 Score=44.53 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=17.1
Q ss_pred HhcCCcEEEEccCCCchhHH
Q 011065 154 ALTGSDILARAKNGTGKTAA 173 (494)
Q Consensus 154 ~~~~~~~ii~~~TGsGKT~~ 173 (494)
+..|..++++||||||||+.
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 34677899999999999995
No 217
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=86.36 E-value=3.5 Score=34.61 Aligned_cols=73 Identities=16% Similarity=0.128 Sum_probs=50.0
Q ss_pred ceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHh----cCCCeEEEEchHHHHHhHhcCCcccccc
Q 011065 188 VIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL----YQPVHLLVGTPGRILDLSKKGVCILKDC 263 (494)
Q Consensus 188 ~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~l~~~ 263 (494)
..++||.|+++..+..+...+.. .++.+..++|+....+....+ .....|+|+|. .+.. ..++..+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~-Gid~~~~ 103 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQ----DGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VCAR-GIDVKQV 103 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SCCT-TTCCTTE
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----chhc-CCCcccC
Confidence 34899999999998777776654 367788889887655432222 24678999994 2222 4557788
Q ss_pred ceEEecc
Q 011065 264 SMLVMDE 270 (494)
Q Consensus 264 ~~iViDE 270 (494)
++||.-+
T Consensus 104 ~~Vi~~d 110 (175)
T 2rb4_A 104 TIVVNFD 110 (175)
T ss_dssp EEEEESS
T ss_pred CEEEEeC
Confidence 8888533
No 218
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=86.36 E-value=2 Score=47.87 Aligned_cols=78 Identities=14% Similarity=0.199 Sum_probs=64.4
Q ss_pred CCCcEEEEecChhHHHHHHHHHHH---cCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCccc----ccCCCCCCCE
Q 011065 356 QINQSIIFCNSVNRVELLAKKITE---LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFT----RGIDIQAVNV 428 (494)
Q Consensus 356 ~~~~~lVF~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~----~Gidi~~v~~ 428 (494)
...++||.+|+++-+.++++.+.+ .++.+..+||+++..++...++.+..|..+|+|+|.-.- .-++..++.+
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 456899999999999999999998 467899999999998888889999999999999996211 1255678888
Q ss_pred EEEcC
Q 011065 429 VINFD 433 (494)
Q Consensus 429 VI~~~ 433 (494)
||.-.
T Consensus 200 lViDE 204 (1104)
T 4ddu_A 200 VFVDD 204 (1104)
T ss_dssp EEESC
T ss_pred EEEeC
Confidence 88533
No 219
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=86.12 E-value=1.3 Score=50.48 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=27.2
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 011065 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 300 (494)
+++-+++|+||+-.-+|..-...+.+.++....++-+|..+
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IA 1273 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIA 1273 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEEC
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEec
Confidence 45567899999887666666666777776665555444433
No 220
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=85.46 E-value=0.45 Score=40.59 Aligned_cols=19 Identities=11% Similarity=0.209 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCchhHHh
Q 011065 156 TGSDILARAKNGTGKTAAF 174 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~ 174 (494)
.|+-++++||+|||||+..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566899999999999963
No 221
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=85.39 E-value=4.7 Score=33.44 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=49.7
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHh----cCCCeEEEEchHHHHHhHhcCCccccccc
Q 011065 189 IQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL----YQPVHLLVGTPGRILDLSKKGVCILKDCS 264 (494)
Q Consensus 189 ~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~ 264 (494)
.++||.|+++..+..+...+... ++.+..++|+....+....+ .....|+|+|. .+.. ..++..++
T Consensus 31 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~-G~d~~~~~ 100 (165)
T 1fuk_A 31 TQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLAR-GIDVQQVS 100 (165)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGTT-TCCCCSCS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhhc-CCCcccCC
Confidence 47999999999988877777653 57788888887654432221 24678999994 2233 34577888
Q ss_pred eEEeccc
Q 011065 265 MLVMDEA 271 (494)
Q Consensus 265 ~iViDEa 271 (494)
+||.-+.
T Consensus 101 ~Vi~~~~ 107 (165)
T 1fuk_A 101 LVINYDL 107 (165)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 8776443
No 222
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=85.23 E-value=0.63 Score=46.04 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=29.3
Q ss_pred cCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHH
Q 011065 156 TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELA 201 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la 201 (494)
...+++|.|+||||||..+ ..++..+...+ ..++|+=|..++.
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~~g--~~viv~Dpkge~~ 94 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLLRG--DRMVIVDPNGDML 94 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHTT--CEEEEEEETTHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHHCC--CcEEEEeCCCchh
Confidence 3467999999999999974 33444333332 3567777887775
No 223
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=85.15 E-value=1.9 Score=44.38 Aligned_cols=40 Identities=25% Similarity=0.458 Sum_probs=27.4
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 011065 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 300 (494)
+.+-+++++||.-.-+|......+.+.+..+..+. .+++.
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~-tvi~i 535 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQKNK-TVLVI 535 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCC-EEEEE
Confidence 45668999999988777666677777776665444 34433
No 224
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=84.56 E-value=0.83 Score=43.30 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=16.7
Q ss_pred hcCCcEEEEccCCCchhHH
Q 011065 155 LTGSDILARAKNGTGKTAA 173 (494)
Q Consensus 155 ~~~~~~ii~~~TGsGKT~~ 173 (494)
..|..+.+.|+||||||+.
T Consensus 169 ~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHTCCEEEEESTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4678899999999999994
No 225
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=84.55 E-value=4.1 Score=34.16 Aligned_cols=73 Identities=18% Similarity=0.172 Sum_probs=50.3
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHH---h-cCCCeEEEEchHHHHHhHhcCCccccccc
Q 011065 189 IQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMR---L-YQPVHLLVGTPGRILDLSKKGVCILKDCS 264 (494)
Q Consensus 189 ~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~ 264 (494)
.++||.|+++..+..+.+.+... ++.+..++|+....+.... + .....|+|+|.- +.. ..++..++
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~-Gldi~~~~ 101 (172)
T 1t5i_A 32 NQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----FGR-GMDIERVN 101 (172)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----CST-TCCGGGCS
T ss_pred CcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-----hhc-CcchhhCC
Confidence 37999999999988877777654 5778888888765443222 1 246789999951 222 45577888
Q ss_pred eEEeccc
Q 011065 265 MLVMDEA 271 (494)
Q Consensus 265 ~iViDEa 271 (494)
+||.-+.
T Consensus 102 ~Vi~~d~ 108 (172)
T 1t5i_A 102 IAFNYDM 108 (172)
T ss_dssp EEEESSC
T ss_pred EEEEECC
Confidence 8876443
No 226
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=84.10 E-value=0.59 Score=40.56 Aligned_cols=19 Identities=26% Similarity=0.183 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCchhHHh
Q 011065 156 TGSDILARAKNGTGKTAAF 174 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~ 174 (494)
.++.+++.|++|||||+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 3556999999999999974
No 227
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=83.98 E-value=0.65 Score=44.88 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.+..++++||||||||+.
T Consensus 135 ~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSEEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455689999999999996
No 228
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=83.93 E-value=0.81 Score=41.01 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=25.1
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc
Q 011065 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (494)
|.-+++.|++|+|||+..+..+.+.....+. .+++++
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~--~v~~~s 66 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGE--PGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCC--CEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCC--Cceeec
Confidence 3458999999999998766555554443322 466666
No 229
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=83.88 E-value=0.62 Score=40.48 Aligned_cols=19 Identities=16% Similarity=0.363 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCCchhHHh
Q 011065 156 TGSDILARAKNGTGKTAAF 174 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~ 174 (494)
.++-++++||+|+|||+..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999963
No 230
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=83.82 E-value=4.7 Score=35.16 Aligned_cols=70 Identities=16% Similarity=0.125 Sum_probs=49.5
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHh----cCCCeEEEEchHHHHHhHhcCCccccccc
Q 011065 189 IQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL----YQPVHLLVGTPGRILDLSKKGVCILKDCS 264 (494)
Q Consensus 189 ~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~ 264 (494)
.++||.|+++.-+..+.+.+... ++.+..++|+....+....+ ....+|+|+|. .... ..++..++
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~-Gidi~~v~ 101 (212)
T 3eaq_A 32 DRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VAAR-GLDIPQVD 101 (212)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TTTC-SSSCCCBS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hhhc-CCCCccCc
Confidence 37999999999988877777654 57788899987755433222 24578999994 2333 45677888
Q ss_pred eEEe
Q 011065 265 MLVM 268 (494)
Q Consensus 265 ~iVi 268 (494)
+||.
T Consensus 102 ~Vi~ 105 (212)
T 3eaq_A 102 LVVH 105 (212)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8774
No 231
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=83.78 E-value=0.47 Score=43.33 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=16.0
Q ss_pred hcCCcEEEEccCCCchhHH
Q 011065 155 LTGSDILARAKNGTGKTAA 173 (494)
Q Consensus 155 ~~~~~~ii~~~TGsGKT~~ 173 (494)
..|.-+++.||||||||+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp CSSEEEEEECSTTCSHHHH
T ss_pred CCCCEEEEECCCCccHHHH
Confidence 3555689999999999986
No 232
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=83.76 E-value=1.6 Score=41.00 Aligned_cols=36 Identities=28% Similarity=0.144 Sum_probs=25.8
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc
Q 011065 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (494)
|.-++|.|++|+|||+..+..+....... ..+++++
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~s 103 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHS 103 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEE
Confidence 45589999999999987665555544332 3678877
No 233
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=83.32 E-value=0.66 Score=40.63 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCchhHHh
Q 011065 156 TGSDILARAKNGTGKTAAF 174 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~ 174 (494)
.|+-+++.||+|+|||+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 3455889999999999963
No 234
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=82.87 E-value=0.63 Score=40.54 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=16.6
Q ss_pred hcCCcEEEEccCCCchhHHh
Q 011065 155 LTGSDILARAKNGTGKTAAF 174 (494)
Q Consensus 155 ~~~~~~ii~~~TGsGKT~~~ 174 (494)
..++-++++|++|||||+..
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHH
Confidence 45667999999999999963
No 235
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=82.75 E-value=0.53 Score=39.48 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=13.5
Q ss_pred EEEEccCCCchhHHh
Q 011065 160 ILARAKNGTGKTAAF 174 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~ 174 (494)
+++.|++|||||+..
T Consensus 4 I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 4 ILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999964
No 236
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=82.71 E-value=0.39 Score=41.26 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.|..+++.|++|||||+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp TTEEEEEEECTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 455689999999999996
No 237
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=82.57 E-value=0.64 Score=39.47 Aligned_cols=20 Identities=30% Similarity=0.227 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCchhHHhH
Q 011065 156 TGSDILARAKNGTGKTAAFC 175 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~ 175 (494)
.++.+++.|++|||||+..-
T Consensus 10 ~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHH
Confidence 45669999999999999743
No 238
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=82.43 E-value=0.7 Score=40.05 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCchhHHh
Q 011065 156 TGSDILARAKNGTGKTAAF 174 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~ 174 (494)
.|.-+.+.||+|||||+..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4566889999999999963
No 239
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=82.40 E-value=2.7 Score=37.36 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=45.8
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc----CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcC-----ccc-ccCCCCCC
Q 011065 357 INQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD-----LFT-RGIDIQAV 426 (494)
Q Consensus 357 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~-----~~~-~Gidi~~v 426 (494)
..++||.+|+++.+.++++.+.+. +..+..++|+.+... ....+..+...|+|+|. .+. ..+++.++
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 174 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWI 174 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTTC
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccC
Confidence 458999999999999999988775 466777777754332 23445567789999994 222 34667788
Q ss_pred CEEEE
Q 011065 427 NVVIN 431 (494)
Q Consensus 427 ~~VI~ 431 (494)
.+||.
T Consensus 175 ~~lVi 179 (237)
T 3bor_A 175 KMFVL 179 (237)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88774
No 240
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=82.25 E-value=0.58 Score=39.57 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=14.2
Q ss_pred CcEEEEccCCCchhHH
Q 011065 158 SDILARAKNGTGKTAA 173 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~ 173 (494)
+-++++|++|||||+.
T Consensus 4 ~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGI 19 (178)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4589999999999996
No 241
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=82.18 E-value=4.9 Score=34.49 Aligned_cols=71 Identities=6% Similarity=0.036 Sum_probs=51.0
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc-----CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCc-----c-cccCCCCC
Q 011065 357 INQSIIFCNSVNRVELLAKKITEL-----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-----F-TRGIDIQA 425 (494)
Q Consensus 357 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~-----~-~~Gidi~~ 425 (494)
..++||.+|+++.+.++++.+.+. +..+..++|+.+....... + .+..+|+|+|.- + ...+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 347999999999999998888764 5678889998776544322 2 346789999962 2 22356778
Q ss_pred CCEEEE
Q 011065 426 VNVVIN 431 (494)
Q Consensus 426 v~~VI~ 431 (494)
+.+||.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888774
No 242
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=82.17 E-value=0.73 Score=39.99 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCchhHHh
Q 011065 156 TGSDILARAKNGTGKTAAF 174 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~ 174 (494)
.|.-+++.|++|||||+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566899999999999963
No 243
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=82.09 E-value=0.78 Score=39.05 Aligned_cols=19 Identities=26% Similarity=0.204 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhHHhH
Q 011065 157 GSDILARAKNGTGKTAAFC 175 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (494)
.+.+++.|++|||||+..-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3458999999999999743
No 244
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=82.00 E-value=1.5 Score=44.07 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=19.6
Q ss_pred cCCcEEEEccCCCchhHHhHHHHHHhh
Q 011065 156 TGSDILARAKNGTGKTAAFCIPALEKI 182 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l 182 (494)
.+.+++|.|.||||||++.-..++..+
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl 192 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSML 192 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 356799999999999997544443333
No 245
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=81.95 E-value=11 Score=32.19 Aligned_cols=71 Identities=11% Similarity=0.113 Sum_probs=49.5
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHh----cCCCeEEEEchHHHHHhHhcCCccccccce
Q 011065 190 QVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL----YQPVHLLVGTPGRILDLSKKGVCILKDCSM 265 (494)
Q Consensus 190 ~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~ 265 (494)
++||.|+++.-+..+.+.+... ++.+..++|+....+....+ .....|+|+|. .+.. ..++..+++
T Consensus 56 ~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~~-Gldi~~v~~ 125 (191)
T 2p6n_A 56 PVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VASK-GLDFPAIQH 125 (191)
T ss_dssp CEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHHT-TCCCCCCSE
T ss_pred CEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chhc-CCCcccCCE
Confidence 7999999999988888777654 57788889887654332221 24678999994 2233 345778888
Q ss_pred EEecc
Q 011065 266 LVMDE 270 (494)
Q Consensus 266 iViDE 270 (494)
||.-+
T Consensus 126 VI~~d 130 (191)
T 2p6n_A 126 VINYD 130 (191)
T ss_dssp EEESS
T ss_pred EEEeC
Confidence 87633
No 246
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=81.90 E-value=0.71 Score=43.65 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhHHh
Q 011065 159 DILARAKNGTGKTAAF 174 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (494)
-++|+||||||||+..
T Consensus 42 lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4899999999999873
No 247
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=81.87 E-value=0.63 Score=39.78 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhHHh
Q 011065 157 GSDILARAKNGTGKTAAF 174 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (494)
+..+++.|++|||||++.
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 455899999999999973
No 248
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=81.73 E-value=3 Score=38.61 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHh
Q 011065 157 GSDILARAKNGTGKTAAF 174 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (494)
...+++.||+|+|||+.+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457999999999999863
No 249
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=81.73 E-value=4.7 Score=38.60 Aligned_cols=72 Identities=8% Similarity=0.170 Sum_probs=55.0
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc-----CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCc-c-----cccCCCCC
Q 011065 357 INQSIIFCNSVNRVELLAKKITEL-----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-F-----TRGIDIQA 425 (494)
Q Consensus 357 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~-~-----~~Gidi~~ 425 (494)
..++||.||++.-+.++++.+.+. ++.+..++|+.+....... +..+..+|+|+|.- + ...+++.+
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 358999999999999999888775 6889999999887665444 34566789999952 1 23467788
Q ss_pred CCEEEE
Q 011065 426 VNVVIN 431 (494)
Q Consensus 426 v~~VI~ 431 (494)
+.+||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 888884
No 250
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=81.59 E-value=3.4 Score=36.33 Aligned_cols=72 Identities=4% Similarity=0.088 Sum_probs=48.9
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHc---CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCc------ccccCCCCCC
Q 011065 356 QINQSIIFCNSVNRVELLAKKITEL---GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL------FTRGIDIQAV 426 (494)
Q Consensus 356 ~~~~~lVF~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~------~~~Gidi~~v 426 (494)
...++||.+|+++-+.++++.+.+. ++.+..++|+.+...+...+ . ...+|+|+|.- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 3457999999999999999998875 67788888887655443332 2 34789999951 2335678888
Q ss_pred CEEEE
Q 011065 427 NVVIN 431 (494)
Q Consensus 427 ~~VI~ 431 (494)
.+||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 88874
No 251
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=81.33 E-value=1.9 Score=40.53 Aligned_cols=23 Identities=22% Similarity=0.149 Sum_probs=18.3
Q ss_pred CcEEEEccCCCchhHHhHHHHHH
Q 011065 158 SDILARAKNGTGKTAAFCIPALE 180 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~ 180 (494)
.-+++.|++|+|||+..+..+..
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999876655554
No 252
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=81.28 E-value=0.85 Score=39.59 Aligned_cols=18 Identities=11% Similarity=0.294 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.++-++++||+|+|||+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 456689999999999996
No 253
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=81.22 E-value=0.75 Score=39.89 Aligned_cols=17 Identities=29% Similarity=0.610 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCchhHH
Q 011065 157 GSDILARAKNGTGKTAA 173 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~ 173 (494)
++-+++.||||+|||+.
T Consensus 34 g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSET 50 (205)
T ss_dssp TEEEEEECCCTTTTHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 45589999999999986
No 254
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=81.09 E-value=0.8 Score=41.53 Aligned_cols=15 Identities=27% Similarity=0.182 Sum_probs=13.4
Q ss_pred EEEEccCCCchhHHh
Q 011065 160 ILARAKNGTGKTAAF 174 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~ 174 (494)
++|+|+||||||+.+
T Consensus 4 i~I~G~~GSGKSTla 18 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 789999999999864
No 255
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=80.95 E-value=5.8 Score=34.01 Aligned_cols=71 Identities=10% Similarity=0.117 Sum_probs=51.7
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc--CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCc-----c-cccCCCCCCCE
Q 011065 357 INQSIIFCNSVNRVELLAKKITEL--GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-----F-TRGIDIQAVNV 428 (494)
Q Consensus 357 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~-----~-~~Gidi~~v~~ 428 (494)
..++||.+|+++.+.++++.+.+. .+.+..++|+.+.......+. ....|+|+|.- + ...+++.++++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 457999999999999999999876 467888888876554433332 24689999951 1 23467788888
Q ss_pred EEE
Q 011065 429 VIN 431 (494)
Q Consensus 429 VI~ 431 (494)
||.
T Consensus 148 iVi 150 (207)
T 2gxq_A 148 AVL 150 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 256
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=80.94 E-value=16 Score=36.93 Aligned_cols=90 Identities=11% Similarity=0.111 Sum_probs=59.9
Q ss_pred HHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHh----cCCCeEEEEchHHHH
Q 011065 175 CIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL----YQPVHLLVGTPGRIL 250 (494)
Q Consensus 175 ~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~ 250 (494)
+..+...+.....+.++||.|+++.-+..+++.+..... .++.+..++|+....+....+ ....+|+|+|.
T Consensus 326 ~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~---- 400 (563)
T 3i5x_A 326 VEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD---- 400 (563)
T ss_dssp HHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG----
T ss_pred HHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc----
Confidence 333444444434455899999999999888888876532 257788888887654432222 25689999996
Q ss_pred HhHhcCCccccccceEEeccc
Q 011065 251 DLSKKGVCILKDCSMLVMDEA 271 (494)
Q Consensus 251 ~~~~~~~~~l~~~~~iViDEa 271 (494)
.+.. ..++.++++||.-..
T Consensus 401 -~~~~-GiDip~v~~VI~~~~ 419 (563)
T 3i5x_A 401 -VGAR-GMDFPNVHEVLQIGV 419 (563)
T ss_dssp -GGTS-SCCCTTCCEEEEESC
T ss_pred -hhhc-CCCcccCCEEEEECC
Confidence 2333 456888998886554
No 257
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=80.92 E-value=0.75 Score=43.02 Aligned_cols=16 Identities=19% Similarity=0.121 Sum_probs=13.8
Q ss_pred cEEEEccCCCchhHHh
Q 011065 159 DILARAKNGTGKTAAF 174 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (494)
-++|+||||||||+.+
T Consensus 5 ~i~i~GptgsGKt~la 20 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCcCCHHHHH
Confidence 3788999999999874
No 258
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=80.64 E-value=1 Score=38.53 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=14.0
Q ss_pred CcEEEEccCCCchhHH
Q 011065 158 SDILARAKNGTGKTAA 173 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~ 173 (494)
+-+.+.||+|||||+.
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4478999999999996
No 259
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=80.49 E-value=0.63 Score=39.30 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCchhHHh
Q 011065 156 TGSDILARAKNGTGKTAAF 174 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~ 174 (494)
.|.-+.++||+|||||+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3455889999999999964
No 260
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=80.49 E-value=1.1 Score=37.68 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchhHHh
Q 011065 157 GSDILARAKNGTGKTAAF 174 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (494)
+..+++.|++|||||+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 345899999999999963
No 261
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=80.24 E-value=0.73 Score=38.90 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=13.5
Q ss_pred EEEEccCCCchhHHh
Q 011065 160 ILARAKNGTGKTAAF 174 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~ 174 (494)
+++.|++|||||+..
T Consensus 5 I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEecCCCCCHHHHH
Confidence 789999999999963
No 262
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=80.12 E-value=0.83 Score=40.03 Aligned_cols=33 Identities=18% Similarity=0.031 Sum_probs=22.3
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc
Q 011065 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (494)
|.-+++.|++|+|||+.+...+. .. +..++++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~---~~---~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL---LS---GKKVAYVD 52 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH---HH---CSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH---Hc---CCcEEEEE
Confidence 45589999999999987554443 11 22566665
No 263
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=80.04 E-value=0.92 Score=42.33 Aligned_cols=15 Identities=33% Similarity=0.372 Sum_probs=13.4
Q ss_pred EEEEccCCCchhHHh
Q 011065 160 ILARAKNGTGKTAAF 174 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~ 174 (494)
++|+||||||||+.+
T Consensus 13 i~i~GptgsGKt~la 27 (316)
T 3foz_A 13 IFLMGPTASGKTALA 27 (316)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCccCHHHHH
Confidence 788999999999874
No 264
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=80.04 E-value=1.1 Score=39.55 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.|+-+.++||+|||||+.
T Consensus 22 ~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp CCCCEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 566789999999999986
No 265
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=79.94 E-value=0.81 Score=39.96 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=16.0
Q ss_pred HHhcCCcEEEEccCCCchhHH
Q 011065 153 IALTGSDILARAKNGTGKTAA 173 (494)
Q Consensus 153 ~~~~~~~~ii~~~TGsGKT~~ 173 (494)
.+..|.-+.+.||+|||||+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 345677789999999999986
No 266
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=79.90 E-value=0.81 Score=40.50 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=15.8
Q ss_pred HhcCCcEEEEccCCCchhHH
Q 011065 154 ALTGSDILARAKNGTGKTAA 173 (494)
Q Consensus 154 ~~~~~~~ii~~~TGsGKT~~ 173 (494)
+..|.-++++||.|+|||+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 34566689999999999996
No 267
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=79.73 E-value=2.3 Score=40.03 Aligned_cols=40 Identities=13% Similarity=-0.062 Sum_probs=26.2
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhc---CCCceEEEEEcC
Q 011065 157 GSDILARAKNGTGKTAAFCIPALEKIDQ---DNNVIQVVILVP 196 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~---~~~~~~~lil~P 196 (494)
|.-+++.|++|+|||+.....+...... .+.+..++++.-
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~ 149 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDT 149 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEES
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEEC
Confidence 3558999999999998765555543322 111347788773
No 268
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=79.55 E-value=1.3 Score=41.73 Aligned_cols=14 Identities=36% Similarity=0.361 Sum_probs=13.0
Q ss_pred EEEEccCCCchhHH
Q 011065 160 ILARAKNGTGKTAA 173 (494)
Q Consensus 160 ~ii~~~TGsGKT~~ 173 (494)
++|.|+.|||||+.
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 78999999999996
No 269
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=79.52 E-value=6.1 Score=33.55 Aligned_cols=89 Identities=12% Similarity=0.067 Sum_probs=48.7
Q ss_pred CCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHH---HHh-cCCCeEE
Q 011065 167 GTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDI---MRL-YQPVHLL 242 (494)
Q Consensus 167 GsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Il 242 (494)
.+.|... +.-++.. ...+.++||.|+++.-+..+.+.+... ++.+..++|+....+.. ..+ .....|+
T Consensus 29 ~~~K~~~-L~~ll~~---~~~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vL 100 (185)
T 2jgn_A 29 ESDKRSF-LLDLLNA---TGKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPIL 100 (185)
T ss_dssp GGGHHHH-HHHHHHH---C-CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEE
T ss_pred cHHHHHH-HHHHHHh---cCCCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEE
Confidence 3456543 3333333 223447999999999988877777653 57788888876543221 111 2467899
Q ss_pred EEchHHHHHhHhcCCccccccceEEec
Q 011065 243 VGTPGRILDLSKKGVCILKDCSMLVMD 269 (494)
Q Consensus 243 v~T~~~l~~~~~~~~~~l~~~~~iViD 269 (494)
|+|. .+ .. ..++..+++||.=
T Consensus 101 vaT~-~~----~~-Gldi~~~~~VI~~ 121 (185)
T 2jgn_A 101 VATA-VA----AR-GLDISNVKHVINF 121 (185)
T ss_dssp EEEC------------CCCSBSEEEES
T ss_pred EEcC-hh----hc-CCCcccCCEEEEe
Confidence 9994 22 22 3457778887763
No 270
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=79.52 E-value=1.1 Score=45.19 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=21.2
Q ss_pred HHHHHHHhcCCcEEEEccCCCchhHH
Q 011065 148 EESIPIALTGSDILARAKNGTGKTAA 173 (494)
Q Consensus 148 ~~~i~~~~~~~~~ii~~~TGsGKT~~ 173 (494)
..++..+..+.++++.||+|+|||+.
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHH
Confidence 44555666788999999999999985
No 271
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=79.50 E-value=1.8 Score=42.01 Aligned_cols=42 Identities=31% Similarity=0.351 Sum_probs=27.2
Q ss_pred cCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHH
Q 011065 156 TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTREL 200 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~l 200 (494)
.+.+++|.|+||||||+..-..+.... .. +.+++|+=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-~~--~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-MQ--GSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-TT--TCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-HC--CCEEEEEeCCcCH
Confidence 456799999999999987544333333 22 2356666676543
No 272
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=79.34 E-value=0.78 Score=39.07 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHhH
Q 011065 157 GSDILARAKNGTGKTAAFC 175 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (494)
+..+++.|++|||||++.-
T Consensus 4 g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp EEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3458899999999999743
No 273
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=79.27 E-value=4 Score=49.51 Aligned_cols=66 Identities=20% Similarity=0.171 Sum_probs=37.5
Q ss_pred HHHHHHHHHCCCCCCcHHH-HHH---HHHHhcCCcEEEEccCCCchhHHhHHHH--HHhhhcCCCceEEEEEcCc
Q 011065 129 RELLMGIFEKGFERPSPIQ-EES---IPIALTGSDILARAKNGTGKTAAFCIPA--LEKIDQDNNVIQVVILVPT 197 (494)
Q Consensus 129 ~~l~~~l~~~~~~~~~~~Q-~~~---i~~~~~~~~~ii~~~TGsGKT~~~~~~~--l~~l~~~~~~~~~lil~P~ 197 (494)
..+.+.+.+.++. +.+.+ .++ ...+...+.++++||||||||+++-..+ +..+ .+....+.++.|-
T Consensus 892 ~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l--~~~~~~~~~inpk 963 (2695)
T 4akg_A 892 QCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIF--DGHANVVYVIDTK 963 (2695)
T ss_dssp HHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEEEECTT
T ss_pred HHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHHHHHHHh--cCCCceEEEeCCC
Confidence 4455666666664 44444 222 2344456679999999999999854322 2222 1223345556664
No 274
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=79.24 E-value=1.1 Score=37.53 Aligned_cols=16 Identities=13% Similarity=-0.008 Sum_probs=13.9
Q ss_pred cEEEEccCCCchhHHh
Q 011065 159 DILARAKNGTGKTAAF 174 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (494)
.+++.|+.|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999974
No 275
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=78.90 E-value=6.6 Score=35.08 Aligned_cols=71 Identities=10% Similarity=0.112 Sum_probs=50.8
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc----CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCc-c-----cccCCCCCC
Q 011065 357 INQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-F-----TRGIDIQAV 426 (494)
Q Consensus 357 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~-~-----~~Gidi~~v 426 (494)
..++||.+|+++.+.++++.+.+. ++.+..++|+.+.......+ ....+|+|+|.- + ...+++.++
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 358999999999999998888764 46778888887655443322 245789999962 1 224677888
Q ss_pred CEEEE
Q 011065 427 NVVIN 431 (494)
Q Consensus 427 ~~VI~ 431 (494)
.+||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88774
No 276
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=78.67 E-value=1.1 Score=38.59 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=14.1
Q ss_pred CcEEEEccCCCchhHH
Q 011065 158 SDILARAKNGTGKTAA 173 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~ 173 (494)
+-+|++||.|+|||+.
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999985
No 277
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=78.58 E-value=1.2 Score=37.98 Aligned_cols=18 Identities=44% Similarity=0.615 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHh
Q 011065 157 GSDILARAKNGTGKTAAF 174 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (494)
+..+++.|++|||||++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 10 GINILITGTPGTGKTSMA 27 (184)
T ss_dssp SCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 456899999999999973
No 278
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=78.47 E-value=1.2 Score=42.04 Aligned_cols=23 Identities=30% Similarity=0.250 Sum_probs=18.7
Q ss_pred HHHhcCCcEEEEccCCCchhHHh
Q 011065 152 PIALTGSDILARAKNGTGKTAAF 174 (494)
Q Consensus 152 ~~~~~~~~~ii~~~TGsGKT~~~ 174 (494)
..+..+.++++.||+|+|||+.+
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHH
Confidence 34456788999999999999863
No 279
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=78.28 E-value=22 Score=36.16 Aligned_cols=89 Identities=11% Similarity=0.120 Sum_probs=59.4
Q ss_pred HHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHh----cCCCeEEEEchHHHHHh
Q 011065 177 PALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL----YQPVHLLVGTPGRILDL 252 (494)
Q Consensus 177 ~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~ 252 (494)
.+...+.....+.++||.|+++.-+..+++.+..... .++.+..++|+....+....+ .....|+|+|. .
T Consensus 277 ~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~ 350 (579)
T 3sqw_A 277 HIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----V 350 (579)
T ss_dssp HHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----G
T ss_pred HHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----h
Confidence 3344444334455899999999999888888876532 257788888887654432222 25679999996 2
Q ss_pred HhcCCccccccceEEecccc
Q 011065 253 SKKGVCILKDCSMLVMDEAD 272 (494)
Q Consensus 253 ~~~~~~~l~~~~~iViDEah 272 (494)
+.. ..++.++++||.-..-
T Consensus 351 ~~~-GiDip~v~~VI~~~~p 369 (579)
T 3sqw_A 351 GAR-GMDFPNVHEVLQIGVP 369 (579)
T ss_dssp GTS-SCCCTTCCEEEEESCC
T ss_pred hhc-CCCcccCCEEEEcCCC
Confidence 333 4568889998866543
No 280
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=78.08 E-value=0.83 Score=38.50 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCchhHHh
Q 011065 157 GSDILARAKNGTGKTAAF 174 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (494)
+..+++.|+.|||||+..
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 345889999999999964
No 281
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=77.97 E-value=2.9 Score=41.29 Aligned_cols=36 Identities=25% Similarity=0.074 Sum_probs=26.7
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc
Q 011065 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (494)
|.-++|.|++|+|||+..+..+...... +..+++++
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fS 232 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHS 232 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEEC
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEE
Confidence 3448999999999999866666665544 33688887
No 282
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=77.94 E-value=1.5 Score=49.36 Aligned_cols=40 Identities=18% Similarity=0.283 Sum_probs=29.2
Q ss_pred EEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHH
Q 011065 160 ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE 199 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~ 199 (494)
-+|.|..|||||.+.+--+...+.....+.++|++||...
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGG
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcc
Confidence 3788899999999866555555555444468999999763
No 283
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=77.92 E-value=3.3 Score=36.27 Aligned_cols=70 Identities=11% Similarity=0.049 Sum_probs=45.8
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc----CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCc------ccccCCCCCC
Q 011065 357 INQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL------FTRGIDIQAV 426 (494)
Q Consensus 357 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~------~~~Gidi~~v 426 (494)
..++||.+|+++.+.++++.+.+. ++.+..++|+.+...+... +. ..+|+|+|.- ....+++.++
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~~ 156 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDKI 156 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhhC
Confidence 458999999999999999888764 6778888988765443322 22 2789999962 1345667788
Q ss_pred CEEEE
Q 011065 427 NVVIN 431 (494)
Q Consensus 427 ~~VI~ 431 (494)
.+||.
T Consensus 157 ~~iVi 161 (224)
T 1qde_A 157 KMFIL 161 (224)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88774
No 284
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=77.85 E-value=1.3 Score=38.32 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhHHh
Q 011065 157 GSDILARAKNGTGKTAAF 174 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (494)
+..+++.|++|||||+..
T Consensus 29 g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456889999999999963
No 285
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=77.77 E-value=8.4 Score=37.80 Aligned_cols=71 Identities=11% Similarity=0.193 Sum_probs=54.5
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHc-CC---cEEEEccCCCHHHHHHHHHHhhcCCccEEEEcC-ccc-----ccCCCCC
Q 011065 356 QINQSIIFCNSVNRVELLAKKITEL-GY---SCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD-LFT-----RGIDIQA 425 (494)
Q Consensus 356 ~~~~~lVF~~~~~~~~~l~~~L~~~-~~---~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~-~~~-----~Gidi~~ 425 (494)
...++||.||++.-+.+.++.+.+. +. .+..+||+.....+..... ..+|+|+|. .+. ..+...+
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 5679999999999999999998876 55 8999999998877655543 357999995 221 2456778
Q ss_pred CCEEEE
Q 011065 426 VNVVIN 431 (494)
Q Consensus 426 v~~VI~ 431 (494)
+++||.
T Consensus 126 ~~~vIi 131 (494)
T 1wp9_A 126 VSLIVF 131 (494)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 888774
No 286
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=77.76 E-value=1.2 Score=41.97 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=14.4
Q ss_pred cEEEEccCCCchhHHhH
Q 011065 159 DILARAKNGTGKTAAFC 175 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (494)
.++|+||||||||+...
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999998743
No 287
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=77.76 E-value=1.9 Score=41.12 Aligned_cols=36 Identities=14% Similarity=0.039 Sum_probs=24.9
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc
Q 011065 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (494)
|+-+++.|++|+|||+..+..+....... ..++++.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g---~~vlyi~ 96 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAG---GIAAFID 96 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEE
Confidence 45689999999999997655554443332 2577776
No 288
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=77.53 E-value=1.6 Score=39.45 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=17.3
Q ss_pred hcCCcEEEEccCCCchhHHh
Q 011065 155 LTGSDILARAKNGTGKTAAF 174 (494)
Q Consensus 155 ~~~~~~ii~~~TGsGKT~~~ 174 (494)
+.+..+++.|++|||||+..
T Consensus 46 l~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 34888999999999999974
No 289
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=77.44 E-value=1.6 Score=41.73 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=20.6
Q ss_pred HHHHHHhcCCc--EEEEccCCCchhHH
Q 011065 149 ESIPIALTGSD--ILARAKNGTGKTAA 173 (494)
Q Consensus 149 ~~i~~~~~~~~--~ii~~~TGsGKT~~ 173 (494)
..+..++.|.+ ++..|.||||||..
T Consensus 95 plv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 95 DVVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 35667778876 88899999999987
No 290
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=77.29 E-value=2.6 Score=35.43 Aligned_cols=26 Identities=12% Similarity=0.005 Sum_probs=17.8
Q ss_pred EEEEccCCCchhHHhHHHHHHhhhcCC
Q 011065 160 ILARAKNGTGKTAAFCIPALEKIDQDN 186 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~ 186 (494)
+.+.|+.|||||+. +..++..+...+
T Consensus 7 i~i~G~sGsGKTTl-~~~L~~~l~~~g 32 (169)
T 1xjc_A 7 WQVVGYKHSGKTTL-MEKWVAAAVREG 32 (169)
T ss_dssp EEEECCTTSSHHHH-HHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHH-HHHHHHhhHhcC
Confidence 77899999999986 333444444433
No 291
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=76.99 E-value=1.3 Score=38.67 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=14.5
Q ss_pred EEEEccCCCchhHHhHH
Q 011065 160 ILARAKNGTGKTAAFCI 176 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~ 176 (494)
+++.||+||||++++..
T Consensus 3 Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 78899999999998544
No 292
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=76.75 E-value=2.2 Score=39.78 Aligned_cols=18 Identities=39% Similarity=0.601 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCchhHHh
Q 011065 157 GSDILARAKNGTGKTAAF 174 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (494)
+..+.+.||+|||||+..
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 345888999999999863
No 293
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=76.69 E-value=2.6 Score=43.38 Aligned_cols=38 Identities=11% Similarity=0.214 Sum_probs=25.5
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEE
Q 011065 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQIL 297 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i 297 (494)
+.+-+++++||.-.-+|......+...+..+..+.-+|
T Consensus 495 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi 532 (587)
T 3qf4_A 495 VKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTF 532 (587)
T ss_dssp HTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEE
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEE
Confidence 44567899999987777666666666666654444333
No 294
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=76.54 E-value=1.6 Score=37.31 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCchhHHh
Q 011065 156 TGSDILARAKNGTGKTAAF 174 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~ 174 (494)
.+..+++.|++|||||++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4456899999999999974
No 295
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=76.53 E-value=1.8 Score=40.78 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=20.1
Q ss_pred HHHHHHhcCCc--EEEEccCCCchhHH
Q 011065 149 ESIPIALTGSD--ILARAKNGTGKTAA 173 (494)
Q Consensus 149 ~~i~~~~~~~~--~ii~~~TGsGKT~~ 173 (494)
..+..++.|.+ ++..|.||||||..
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyT 94 (325)
T 1bg2_A 68 KIVKDVLEGYNGTIFAYGQTSSGKTHT 94 (325)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred hhHHHHhCCCeEEEEEECCCCCCCceE
Confidence 34556677876 78899999999987
No 296
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=76.51 E-value=2.6 Score=43.30 Aligned_cols=38 Identities=21% Similarity=0.407 Sum_probs=25.2
Q ss_pred cccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEE
Q 011065 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMF 299 (494)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (494)
.+-+++++||.-.-+|..-...+...+..+..+. .+++
T Consensus 494 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~-t~i~ 531 (578)
T 4a82_A 494 NNPPILILDEATSALDLESESIIQEALDVLSKDR-TTLI 531 (578)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTS-EEEE
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCC-EEEE
Confidence 4567899999987666655666666666665444 4444
No 297
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=76.32 E-value=2.2 Score=40.86 Aligned_cols=18 Identities=39% Similarity=0.442 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhHHh
Q 011065 157 GSDILARAKNGTGKTAAF 174 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (494)
...+++.||+|+|||+.+
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457999999999999863
No 298
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=76.28 E-value=3.4 Score=34.88 Aligned_cols=38 Identities=16% Similarity=0.024 Sum_probs=21.7
Q ss_pred cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCc
Q 011065 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPT 197 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~ 197 (494)
-++++|+.|||||+. +..++..+...+....++..-|.
T Consensus 8 ~i~i~G~sGsGKTTl-~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL-LKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp EEEEECCTTSCHHHH-HHHHHHHHHHTTCCEEEEEECCC
T ss_pred EEEEEeCCCCCHHHH-HHHHHHhccccCCceeEEeeCCC
Confidence 378999999999986 33344444333333233333343
No 299
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=76.28 E-value=1.1 Score=38.28 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=14.5
Q ss_pred CcEEEEccCCCchhHHh
Q 011065 158 SDILARAKNGTGKTAAF 174 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (494)
.-+++.|++|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34889999999999974
No 300
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=76.20 E-value=1 Score=38.57 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchhHHhH
Q 011065 158 SDILARAKNGTGKTAAFC 175 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (494)
.-+++.|++|||||+..-
T Consensus 4 ~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 348899999999999743
No 301
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=76.15 E-value=1.4 Score=41.80 Aligned_cols=17 Identities=24% Similarity=0.171 Sum_probs=14.4
Q ss_pred cEEEEccCCCchhHHhH
Q 011065 159 DILARAKNGTGKTAAFC 175 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (494)
-++|+||||||||+...
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 37899999999998743
No 302
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=76.05 E-value=1.5 Score=38.71 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=15.3
Q ss_pred CcEEEEccCCCchhHHhHH
Q 011065 158 SDILARAKNGTGKTAAFCI 176 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~ 176 (494)
+-+++.||+||||++++-.
T Consensus 30 kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp EEEEEECCTTCCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3478899999999998543
No 303
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=75.97 E-value=1.3 Score=38.23 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHh
Q 011065 157 GSDILARAKNGTGKTAAF 174 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (494)
+..+++.|+.|||||++.
T Consensus 4 ~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 456899999999999974
No 304
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=75.93 E-value=3.6 Score=35.85 Aligned_cols=44 Identities=14% Similarity=0.041 Sum_probs=27.3
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHhcC----CcEEEEccCCCchhHHh
Q 011065 129 RELLMGIFEKGFERPSPIQEESIPIALTG----SDILARAKNGTGKTAAF 174 (494)
Q Consensus 129 ~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~----~~~ii~~~TGsGKT~~~ 174 (494)
..+.+.|+-.++ .+... ..++..++.+ +.+++.||+|+|||+.+
T Consensus 28 ~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 28 RPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 356666664443 23333 4445555544 24899999999999863
No 305
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=75.88 E-value=1.1 Score=40.44 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=14.7
Q ss_pred CcEEEEccCCCchhHHh
Q 011065 158 SDILARAKNGTGKTAAF 174 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (494)
+.+++.||+|+|||+.+
T Consensus 46 ~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 45999999999999863
No 306
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=75.84 E-value=2.3 Score=40.60 Aligned_cols=37 Identities=11% Similarity=0.036 Sum_probs=25.7
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcC
Q 011065 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVP 196 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 196 (494)
++-+++.|++|+|||+.++..+....... ..++++..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g---~~vlyid~ 99 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREG---KTCAFIDA 99 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeC
Confidence 45589999999999998665555444322 25777764
No 307
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=75.70 E-value=1.2 Score=38.08 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=13.7
Q ss_pred cEEEEccCCCchhHHh
Q 011065 159 DILARAKNGTGKTAAF 174 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (494)
-+++.|++|||||+..
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3788999999999963
No 308
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=75.66 E-value=1.8 Score=41.07 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=19.5
Q ss_pred HHHHHhcCCc--EEEEccCCCchhHH
Q 011065 150 SIPIALTGSD--ILARAKNGTGKTAA 173 (494)
Q Consensus 150 ~i~~~~~~~~--~ii~~~TGsGKT~~ 173 (494)
.+..++.|.+ ++..|.||||||..
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeE
Confidence 4556677876 78899999999987
No 309
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=75.56 E-value=11 Score=33.87 Aligned_cols=71 Identities=14% Similarity=0.083 Sum_probs=51.8
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc----CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcC-----cc--cccCCCCC
Q 011065 357 INQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD-----LF--TRGIDIQA 425 (494)
Q Consensus 357 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~-----~~--~~Gidi~~ 425 (494)
..++||.+|+++-+.++++.+.+. +..+..++|+.........+ ..+ .+|+|+|. .+ ..++++.+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GNG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HHC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cCC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 457999999999999999888874 56778888887765544332 333 78999994 12 22467888
Q ss_pred CCEEEE
Q 011065 426 VNVVIN 431 (494)
Q Consensus 426 v~~VI~ 431 (494)
+.+||.
T Consensus 202 l~~lVi 207 (262)
T 3ly5_A 202 LQCLVI 207 (262)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888874
No 310
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=75.49 E-value=1.6 Score=38.64 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhHHh
Q 011065 158 SDILARAKNGTGKTAAF 174 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (494)
..+++.|++|||||++.
T Consensus 8 ~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45899999999999974
No 311
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=75.46 E-value=9.9 Score=37.23 Aligned_cols=71 Identities=11% Similarity=0.085 Sum_probs=52.6
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc----CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCc-----cc-ccCCCCCC
Q 011065 357 INQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-----FT-RGIDIQAV 426 (494)
Q Consensus 357 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~-----~~-~Gidi~~v 426 (494)
..++||.+|+++-+.++++.+.+. ++.+..++|+.+...+...+ .....|+|+|.- +. ..+++.++
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI----TRGCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh----hcCCCEEEEChHHHHHHHHhCCcccccC
Confidence 348999999999999999888775 46788899998876554433 235789999962 22 24567888
Q ss_pred CEEEE
Q 011065 427 NVVIN 431 (494)
Q Consensus 427 ~~VI~ 431 (494)
.+||.
T Consensus 205 ~~lVl 209 (434)
T 2db3_A 205 RFVVL 209 (434)
T ss_dssp CEEEE
T ss_pred CeEEE
Confidence 88874
No 312
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=75.43 E-value=3 Score=42.35 Aligned_cols=41 Identities=15% Similarity=0.284 Sum_probs=25.3
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcC-CCceEEEEEcCc
Q 011065 157 GSDILARAKNGTGKTAAFCIPALEKIDQD-NNVIQVVILVPT 197 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~-~~~~~~lil~P~ 197 (494)
.-+++|.|.||||||.+.-..++..+... ....+++++=|-
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 35799999999999998554444444332 222344444454
No 313
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=75.40 E-value=1.5 Score=37.85 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=14.3
Q ss_pred cEEEEccCCCchhHHh
Q 011065 159 DILARAKNGTGKTAAF 174 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (494)
.+++.|+.|||||+.+
T Consensus 20 ~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVG 35 (202)
T ss_dssp CEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4899999999999974
No 314
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=75.39 E-value=1.2 Score=37.96 Aligned_cols=15 Identities=20% Similarity=0.364 Sum_probs=13.6
Q ss_pred EEEEccCCCchhHHh
Q 011065 160 ILARAKNGTGKTAAF 174 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~ 174 (494)
+++.|+.|||||+..
T Consensus 4 I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 4 GIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999974
No 315
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=75.38 E-value=1.8 Score=40.44 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCchhHHh
Q 011065 156 TGSDILARAKNGTGKTAAF 174 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~ 174 (494)
....+++.|++|+|||+.+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 3456999999999999863
No 316
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=75.26 E-value=2.3 Score=39.33 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=23.6
Q ss_pred cCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc
Q 011065 156 TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (494)
.|.-++|.|++|+|||+.....+.......+ ..++++.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G--~~v~~~~ 71 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMG--KKVGLAM 71 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSC--CCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC--CeEEEEe
Confidence 4566899999999999875443333322222 2455654
No 317
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=75.14 E-value=1.4 Score=38.05 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchhHHh
Q 011065 157 GSDILARAKNGTGKTAAF 174 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (494)
+.-+++.|++|||||+..
T Consensus 25 g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 455889999999999863
No 318
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=75.12 E-value=46 Score=31.35 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=14.8
Q ss_pred cEEEEccCCCchhHHhHH
Q 011065 159 DILARAKNGTGKTAAFCI 176 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~ 176 (494)
.++++|++|+|||+.+..
T Consensus 81 ~I~i~G~~G~GKSTl~~~ 98 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEA 98 (355)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 488899999999997443
No 319
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=75.06 E-value=1.6 Score=40.70 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHh
Q 011065 157 GSDILARAKNGTGKTAAF 174 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (494)
++.+++.||+|+|||+.+
T Consensus 49 ~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CSEEEEECSSSSSHHHHH
T ss_pred CceEEEECCCCcCHHHHH
Confidence 456999999999999863
No 320
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=74.97 E-value=5.7 Score=48.82 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHH-HHH---HHHhcCCcEEEEccCCCchhHHhHHHHHHhhhc-CCCceEEEEEcCcHH
Q 011065 127 LKRELLMGIFEKGFERPSPIQE-ESI---PIALTGSDILARAKNGTGKTAAFCIPALEKIDQ-DNNVIQVVILVPTRE 199 (494)
Q Consensus 127 l~~~l~~~l~~~~~~~~~~~Q~-~~i---~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~P~~~ 199 (494)
|...+.+.+.+.|+ .+.+.+. +++ ..+...+.++++||||||||+++-.. ...+.. .+......++-|-..
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L-~~al~~l~~~~~~~~~iNPKai 948 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVY-LEAIEQVDNIKSEAHVMDPKAI 948 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHH-HHHHTTTTTCEEEEEEECTTTS
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHH-HHHHHHhhCCCceEEEECCCCC
Confidence 33456666667776 4555443 333 23334455999999999999985422 222211 122334556667543
No 321
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=74.88 E-value=2.6 Score=40.12 Aligned_cols=48 Identities=13% Similarity=-0.080 Sum_probs=30.0
Q ss_pred HHHHHhc-----CCcEEEEccCCCchhHHhHHHHHHhhhcC---CCceEEEEEcCc
Q 011065 150 SIPIALT-----GSDILARAKNGTGKTAAFCIPALEKIDQD---NNVIQVVILVPT 197 (494)
Q Consensus 150 ~i~~~~~-----~~~~ii~~~TGsGKT~~~~~~~l~~l~~~---~~~~~~lil~P~ 197 (494)
.+..++. |.-+++.|++|+|||+.....+....... +.+..++++.-.
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTE 165 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESS
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 3555554 34588999999999987655555433221 123467887743
No 322
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=74.84 E-value=2.1 Score=40.75 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=19.4
Q ss_pred HHHHHhcCCc--EEEEccCCCchhHH
Q 011065 150 SIPIALTGSD--ILARAKNGTGKTAA 173 (494)
Q Consensus 150 ~i~~~~~~~~--~ii~~~TGsGKT~~ 173 (494)
.+..++.|.+ ++..|.||||||..
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyT 106 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWT 106 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEE
Confidence 4556677876 78899999999987
No 323
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=74.81 E-value=2.1 Score=41.13 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=20.0
Q ss_pred HHHHHHhcCCc--EEEEccCCCchhHH
Q 011065 149 ESIPIALTGSD--ILARAKNGTGKTAA 173 (494)
Q Consensus 149 ~~i~~~~~~~~--~ii~~~TGsGKT~~ 173 (494)
..+..++.|.+ ++..|.||||||..
T Consensus 92 plv~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 92 PLVDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHhCCCeeeEEeecCCCCCCCEe
Confidence 34556678876 78899999999987
No 324
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=74.79 E-value=3 Score=39.00 Aligned_cols=41 Identities=5% Similarity=-0.154 Sum_probs=28.2
Q ss_pred cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHH
Q 011065 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTREL 200 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~l 200 (494)
.++|.||+|+|||+..+..+...... +.+.+++++..-..+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~-g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ-YPDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH-CTTCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEeccchh
Confidence 47899999999999866666555433 123478888854443
No 325
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=74.77 E-value=2.1 Score=40.39 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=20.9
Q ss_pred HHHHHHhcCCc--EEEEccCCCchhHH
Q 011065 149 ESIPIALTGSD--ILARAKNGTGKTAA 173 (494)
Q Consensus 149 ~~i~~~~~~~~--~ii~~~TGsGKT~~ 173 (494)
..+..++.|.+ ++..|.||||||..
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyT 97 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYT 97 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEE
Confidence 45677788877 78899999999987
No 326
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=74.67 E-value=2 Score=41.69 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=19.4
Q ss_pred HHHHHhcCCc--EEEEccCCCchhHH
Q 011065 150 SIPIALTGSD--ILARAKNGTGKTAA 173 (494)
Q Consensus 150 ~i~~~~~~~~--~ii~~~TGsGKT~~ 173 (494)
.+..++.|.+ ++..|.||||||..
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyT 171 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHT 171 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeE
Confidence 4456677876 78899999999987
No 327
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=74.58 E-value=2.1 Score=40.71 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=20.0
Q ss_pred HHHHHHhcCCc--EEEEccCCCchhHH
Q 011065 149 ESIPIALTGSD--ILARAKNGTGKTAA 173 (494)
Q Consensus 149 ~~i~~~~~~~~--~ii~~~TGsGKT~~ 173 (494)
..+..++.|.+ ++..|.||||||..
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyT 94 (349)
T 1t5c_A 68 PIIDSAIQGYNGTIFAYGQTASGKTYT 94 (349)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHHcCCccceeeecCCCCCCCeE
Confidence 34556678876 78899999999987
No 328
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=74.51 E-value=2.4 Score=40.48 Aligned_cols=38 Identities=13% Similarity=0.007 Sum_probs=24.4
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCc
Q 011065 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPT 197 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~ 197 (494)
|.-++|.||+|+|||+.....+...... +..++++..-
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~E 98 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDAE 98 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEecc
Confidence 4458899999999998754444333222 2257777643
No 329
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=74.51 E-value=1.7 Score=36.16 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=15.3
Q ss_pred CcEEEEccCCCchhHHhH
Q 011065 158 SDILARAKNGTGKTAAFC 175 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (494)
+.+++.|..|||||++.-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999999743
No 330
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=74.49 E-value=1.3 Score=41.06 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=14.0
Q ss_pred cEEEEccCCCchhHHh
Q 011065 159 DILARAKNGTGKTAAF 174 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (494)
-++++|++|||||+.+
T Consensus 35 livl~G~sGsGKSTla 50 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEECCTTSCTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3889999999999963
No 331
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=74.47 E-value=1.1 Score=38.88 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhHHh
Q 011065 157 GSDILARAKNGTGKTAAF 174 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (494)
+.-+++.|+.|||||+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 445889999999999974
No 332
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=74.47 E-value=2.1 Score=40.93 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=19.5
Q ss_pred HHHHHhcCCc--EEEEccCCCchhHH
Q 011065 150 SIPIALTGSD--ILARAKNGTGKTAA 173 (494)
Q Consensus 150 ~i~~~~~~~~--~ii~~~TGsGKT~~ 173 (494)
.+..++.|.+ ++..|.||||||..
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceE
Confidence 4556677876 78899999999987
No 333
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=74.46 E-value=2.1 Score=40.62 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=19.6
Q ss_pred HHHHHhcCCc--EEEEccCCCchhHH
Q 011065 150 SIPIALTGSD--ILARAKNGTGKTAA 173 (494)
Q Consensus 150 ~i~~~~~~~~--~ii~~~TGsGKT~~ 173 (494)
.+..++.|.+ ++..|.||||||..
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyT 100 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYT 100 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEe
Confidence 4556677876 78899999999987
No 334
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=74.45 E-value=2.1 Score=40.79 Aligned_cols=25 Identities=28% Similarity=0.495 Sum_probs=20.2
Q ss_pred HHHHHHhcCCc--EEEEccCCCchhHH
Q 011065 149 ESIPIALTGSD--ILARAKNGTGKTAA 173 (494)
Q Consensus 149 ~~i~~~~~~~~--~ii~~~TGsGKT~~ 173 (494)
..+..++.|.+ ++..|.||||||..
T Consensus 83 ~lv~~~l~G~n~tifAYGqTGSGKTyT 109 (354)
T 3gbj_A 83 NILQNAFDGYNACIFAYGQTGSGKSYT 109 (354)
T ss_dssp HHHHHHHTTCCEEEEEEECTTSSHHHH
T ss_pred HHHHHHhCCceeEEEeeCCCCCCCceE
Confidence 34566678877 78899999999987
No 335
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=74.45 E-value=1.3 Score=39.27 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=11.7
Q ss_pred cCCcEEEEccCCCchhHHh
Q 011065 156 TGSDILARAKNGTGKTAAF 174 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~ 174 (494)
.|.-+.+.||+|||||+..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4556889999999999863
No 336
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=74.40 E-value=1.2 Score=38.87 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=14.2
Q ss_pred CCcEEEEccCCCchhHH
Q 011065 157 GSDILARAKNGTGKTAA 173 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~ 173 (494)
+.-+.|.|++|||||+.
T Consensus 22 g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTL 38 (208)
T ss_dssp CEEEEEECCTTSCTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34478999999999985
No 337
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=74.37 E-value=2.1 Score=40.85 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=19.4
Q ss_pred HHHHHhcCCc--EEEEccCCCchhHH
Q 011065 150 SIPIALTGSD--ILARAKNGTGKTAA 173 (494)
Q Consensus 150 ~i~~~~~~~~--~ii~~~TGsGKT~~ 173 (494)
.+..++.|.+ ++..|.||||||..
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceE
Confidence 4556677876 78899999999987
No 338
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=74.19 E-value=1.7 Score=37.97 Aligned_cols=16 Identities=25% Similarity=0.239 Sum_probs=14.0
Q ss_pred EEEEccCCCchhHHhH
Q 011065 160 ILARAKNGTGKTAAFC 175 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~ 175 (494)
+++.|++|||||++.-
T Consensus 3 I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7899999999999743
No 339
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=74.17 E-value=2.2 Score=40.74 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=20.3
Q ss_pred HHHHHHhcCCc--EEEEccCCCchhHH
Q 011065 149 ESIPIALTGSD--ILARAKNGTGKTAA 173 (494)
Q Consensus 149 ~~i~~~~~~~~--~ii~~~TGsGKT~~ 173 (494)
..+..++.|.+ ++..|.||||||..
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceE
Confidence 35666778877 78899999999987
No 340
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=74.06 E-value=2.2 Score=40.78 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=19.6
Q ss_pred HHHHHhcCCc--EEEEccCCCchhHH
Q 011065 150 SIPIALTGSD--ILARAKNGTGKTAA 173 (494)
Q Consensus 150 ~i~~~~~~~~--~ii~~~TGsGKT~~ 173 (494)
.+..++.|.+ ++..|.||||||..
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceee
Confidence 4556677876 78899999999987
No 341
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=73.96 E-value=11 Score=32.99 Aligned_cols=71 Identities=11% Similarity=0.088 Sum_probs=50.3
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHc----CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCc-----ccc--cCCCC
Q 011065 356 QINQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-----FTR--GIDIQ 424 (494)
Q Consensus 356 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~-----~~~--Gidi~ 424 (494)
...++||.+|+++-+.++++.+.+. ++.+..++|+.+.......+ +..+|+|+|.- +.. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 3457999999999999999988875 37788899987654443332 35789999952 112 36777
Q ss_pred CCCEEEE
Q 011065 425 AVNVVIN 431 (494)
Q Consensus 425 ~v~~VI~ 431 (494)
++.+||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 8888774
No 342
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=73.82 E-value=2 Score=36.10 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=14.2
Q ss_pred cEEEEccCCCchhHHh
Q 011065 159 DILARAKNGTGKTAAF 174 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (494)
.+++.|++|||||+..
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5899999999999974
No 343
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=73.79 E-value=4.7 Score=37.86 Aligned_cols=15 Identities=20% Similarity=0.153 Sum_probs=13.1
Q ss_pred EEEEccCCCchhHHh
Q 011065 160 ILARAKNGTGKTAAF 174 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~ 174 (494)
+-+.|++|||||+.+
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999963
No 344
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=73.78 E-value=2.1 Score=40.67 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=21.2
Q ss_pred HHHHHHhcCCc--EEEEccCCCchhHHh
Q 011065 149 ESIPIALTGSD--ILARAKNGTGKTAAF 174 (494)
Q Consensus 149 ~~i~~~~~~~~--~ii~~~TGsGKT~~~ 174 (494)
..+..++.|.+ ++..|.||||||...
T Consensus 75 ~lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 75 QLVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhcCCceeEEEEECCCCCCCcEec
Confidence 36677778877 788999999999873
No 345
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=73.75 E-value=2.3 Score=40.79 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=19.9
Q ss_pred HHHHHHhcCCc--EEEEccCCCchhHH
Q 011065 149 ESIPIALTGSD--ILARAKNGTGKTAA 173 (494)
Q Consensus 149 ~~i~~~~~~~~--~ii~~~TGsGKT~~ 173 (494)
..+..++.|.+ ++..|.||||||..
T Consensus 80 plv~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 80 EMLQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHHhcCCeeEEEEeCCCCCCCceE
Confidence 34556677876 78899999999987
No 346
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=73.57 E-value=1.7 Score=42.13 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=13.8
Q ss_pred EEEEccCCCchhHHhH
Q 011065 160 ILARAKNGTGKTAAFC 175 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~ 175 (494)
++|+||||||||+.+.
T Consensus 5 i~i~GptgsGKttla~ 20 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEECSSSSHHHHHH
T ss_pred EEEECcchhhHHHHHH
Confidence 7899999999998743
No 347
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=73.56 E-value=2.3 Score=41.39 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=21.0
Q ss_pred HHHHHhcCCc--EEEEccCCCchhHHh
Q 011065 150 SIPIALTGSD--ILARAKNGTGKTAAF 174 (494)
Q Consensus 150 ~i~~~~~~~~--~ii~~~TGsGKT~~~ 174 (494)
.+..++.|.+ ++..|.||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 6677788877 788999999999873
No 348
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=73.52 E-value=2.2 Score=40.85 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=20.2
Q ss_pred HHHHHHhcCCc--EEEEccCCCchhHH
Q 011065 149 ESIPIALTGSD--ILARAKNGTGKTAA 173 (494)
Q Consensus 149 ~~i~~~~~~~~--~ii~~~TGsGKT~~ 173 (494)
..+..++.|.+ ++..|.||||||..
T Consensus 79 plv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 79 PILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred HhHHHHhCCCceEEEEeCCCCCCCceE
Confidence 34556678876 78899999999987
No 349
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=73.45 E-value=1.8 Score=41.47 Aligned_cols=17 Identities=41% Similarity=0.530 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchhHHh
Q 011065 158 SDILARAKNGTGKTAAF 174 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (494)
+.+++.||+|+|||+.+
T Consensus 71 ~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46999999999999874
No 350
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=73.41 E-value=2.2 Score=40.66 Aligned_cols=26 Identities=31% Similarity=0.542 Sum_probs=21.4
Q ss_pred HHHHHHhcCCc--EEEEccCCCchhHHh
Q 011065 149 ESIPIALTGSD--ILARAKNGTGKTAAF 174 (494)
Q Consensus 149 ~~i~~~~~~~~--~ii~~~TGsGKT~~~ 174 (494)
..+..++.|.+ ++..|.||||||...
T Consensus 76 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 76 QLVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 36777788877 788999999999873
No 351
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=73.36 E-value=1 Score=39.16 Aligned_cols=18 Identities=22% Similarity=0.075 Sum_probs=14.8
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.+.-+.+.|++|||||+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 344578999999999986
No 352
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=73.31 E-value=2.2 Score=36.56 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhHHh
Q 011065 157 GSDILARAKNGTGKTAAF 174 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (494)
+.-+++.|++|||||++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp SCEEEEEECTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 455899999999999974
No 353
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=73.25 E-value=1.9 Score=37.75 Aligned_cols=16 Identities=19% Similarity=0.154 Sum_probs=14.0
Q ss_pred EEEEccCCCchhHHhH
Q 011065 160 ILARAKNGTGKTAAFC 175 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~ 175 (494)
+++.|++|||||++.-
T Consensus 3 I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7899999999999743
No 354
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=73.07 E-value=2 Score=37.66 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=15.1
Q ss_pred CcEEEEccCCCchhHHhH
Q 011065 158 SDILARAKNGTGKTAAFC 175 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (494)
..+++.|++|||||++.-
T Consensus 5 ~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 458999999999999743
No 355
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=73.02 E-value=1.7 Score=37.96 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=16.1
Q ss_pred hcCCcEEEEccCCCchhHHh
Q 011065 155 LTGSDILARAKNGTGKTAAF 174 (494)
Q Consensus 155 ~~~~~~ii~~~TGsGKT~~~ 174 (494)
..+..+++.|++|||||+..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34556889999999999974
No 356
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=72.88 E-value=1.4 Score=37.25 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchhHHh
Q 011065 157 GSDILARAKNGTGKTAAF 174 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (494)
|..+++.|+.|||||++.
T Consensus 5 g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 445889999999999963
No 357
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=72.86 E-value=2.3 Score=40.85 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=20.0
Q ss_pred HHHHHHhcCCc--EEEEccCCCchhHH
Q 011065 149 ESIPIALTGSD--ILARAKNGTGKTAA 173 (494)
Q Consensus 149 ~~i~~~~~~~~--~ii~~~TGsGKT~~ 173 (494)
..+..++.|.+ ++..|.||||||..
T Consensus 91 plv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 91 PLIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHHhCCceEEEEeecCCCCCccee
Confidence 34556677876 78899999999987
No 358
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=72.82 E-value=9.8 Score=35.24 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=50.1
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHh----cCCCeEEEEchHHHHHhHhcCCccccccc
Q 011065 189 IQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL----YQPVHLLVGTPGRILDLSKKGVCILKDCS 264 (494)
Q Consensus 189 ~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~ 264 (494)
.++||.|+++.-+..+.+.+.. .++.+..++|+....+....+ ....+|+|+|. .... ..++..++
T Consensus 29 ~~~LVF~~t~~~~~~l~~~L~~----~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va~~-Gidi~~v~ 98 (300)
T 3i32_A 29 DRAMVFTRTKAETEEIAQGLLR----LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VAAR-GLDIPQVD 98 (300)
T ss_dssp SSEEEECSSHHHHHHHHHHHHT----TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TTTC-STTCCCCS
T ss_pred CCEEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hhhc-Ccccccee
Confidence 4799999999988776666554 367888899987655433222 24678999995 2333 45678888
Q ss_pred eEEeccc
Q 011065 265 MLVMDEA 271 (494)
Q Consensus 265 ~iViDEa 271 (494)
+||.=+.
T Consensus 99 ~VI~~d~ 105 (300)
T 3i32_A 99 LVVHYRM 105 (300)
T ss_dssp EEEESSC
T ss_pred EEEEcCC
Confidence 8875333
No 359
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=72.80 E-value=0.83 Score=51.98 Aligned_cols=41 Identities=22% Similarity=0.365 Sum_probs=28.2
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 011065 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 300 (494)
+++-+++|+||+=.-+|..-...+.+.+..+..++-+|+.|
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiia 610 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIA 610 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEEC
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 56678999999987777666667777766654454444433
No 360
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=72.75 E-value=2 Score=36.43 Aligned_cols=16 Identities=31% Similarity=0.532 Sum_probs=13.6
Q ss_pred cEEEEccCCCchhHHh
Q 011065 159 DILARAKNGTGKTAAF 174 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (494)
.+.+.||+|||||+..
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999863
No 361
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=72.71 E-value=17 Score=34.90 Aligned_cols=72 Identities=14% Similarity=0.094 Sum_probs=50.6
Q ss_pred CceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHh----cCCCeEEEEchHHHHHhHhcCCccccc
Q 011065 187 NVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL----YQPVHLLVGTPGRILDLSKKGVCILKD 262 (494)
Q Consensus 187 ~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~l~~ 262 (494)
.+.++||.|+++..+..+.+.+.+. ++.+..++|+....+....+ .....|+|+|. .+.. ..++.+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~-Gidip~ 344 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAAR-GLDISN 344 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHT-TSCCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhc-CCCccc
Confidence 4558999999999988877777653 57788888887754432222 24678999996 2333 345778
Q ss_pred cceEEe
Q 011065 263 CSMLVM 268 (494)
Q Consensus 263 ~~~iVi 268 (494)
+++||.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888775
No 362
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=72.71 E-value=2.1 Score=36.16 Aligned_cols=16 Identities=25% Similarity=0.167 Sum_probs=13.8
Q ss_pred cEEEEccCCCchhHHh
Q 011065 159 DILARAKNGTGKTAAF 174 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (494)
-.+|+|++|||||+.+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 3789999999999863
No 363
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=72.71 E-value=2 Score=36.57 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=14.0
Q ss_pred cEEEEccCCCchhHHh
Q 011065 159 DILARAKNGTGKTAAF 174 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (494)
.+++.|++|||||++.
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999974
No 364
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=72.68 E-value=2.1 Score=37.64 Aligned_cols=18 Identities=11% Similarity=0.183 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhHHhH
Q 011065 158 SDILARAKNGTGKTAAFC 175 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (494)
..+++.|++|||||++.-
T Consensus 6 ~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCE 23 (222)
T ss_dssp CCEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458999999999999743
No 365
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=72.60 E-value=2.9 Score=38.98 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchhHHh
Q 011065 157 GSDILARAKNGTGKTAAF 174 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (494)
+..+.+.|++|+|||+..
T Consensus 100 g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 445789999999999964
No 366
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=72.37 E-value=3.2 Score=35.16 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhHHhH
Q 011065 157 GSDILARAKNGTGKTAAFC 175 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (494)
+..+++.|++|||||+..-
T Consensus 13 ~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 3448899999999999743
No 367
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=72.37 E-value=2.4 Score=40.88 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=20.0
Q ss_pred HHHHHhcCCc--EEEEccCCCchhHHh
Q 011065 150 SIPIALTGSD--ILARAKNGTGKTAAF 174 (494)
Q Consensus 150 ~i~~~~~~~~--~ii~~~TGsGKT~~~ 174 (494)
.+..++.|.+ ++..|.||||||...
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 4556677876 888999999999873
No 368
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=72.24 E-value=1.4 Score=39.44 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.|.-+.+.||+|||||+.
T Consensus 30 ~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 456688999999999984
No 369
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=72.22 E-value=2 Score=37.77 Aligned_cols=18 Identities=22% Similarity=0.217 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhHHhH
Q 011065 158 SDILARAKNGTGKTAAFC 175 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (494)
..+.+.|++|||||+..-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 348899999999999743
No 370
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=72.16 E-value=2.3 Score=35.45 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhHHh
Q 011065 159 DILARAKNGTGKTAAF 174 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (494)
.+++.|++|||||++.
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVG 19 (173)
T ss_dssp CEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4889999999999974
No 371
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=72.13 E-value=1.6 Score=37.67 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=13.5
Q ss_pred EEEEccCCCchhHHh
Q 011065 160 ILARAKNGTGKTAAF 174 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~ 174 (494)
+++.|+.|||||++.
T Consensus 18 I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 18 IFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999974
No 372
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=72.09 E-value=9.3 Score=38.55 Aligned_cols=71 Identities=15% Similarity=0.186 Sum_probs=48.3
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc----CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCc-----cccc-C-CCCC
Q 011065 357 INQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-----FTRG-I-DIQA 425 (494)
Q Consensus 357 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~-----~~~G-i-di~~ 425 (494)
..++||.||++.-+.++++.+.+. ++.+..++|+.+...+...+. ...+|+|+|.- +..+ + .+.+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 578999999999999988888775 889999999986554432222 13679999962 1222 4 6778
Q ss_pred CCEEEE
Q 011065 426 VNVVIN 431 (494)
Q Consensus 426 v~~VI~ 431 (494)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888774
No 373
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=71.97 E-value=7.2 Score=35.41 Aligned_cols=44 Identities=18% Similarity=0.069 Sum_probs=30.4
Q ss_pred HHHHHHHHHCCCCCCcHHH-HHHHHHHhcCC-----cEEEEccCCCchhHHhH
Q 011065 129 RELLMGIFEKGFERPSPIQ-EESIPIALTGS-----DILARAKNGTGKTAAFC 175 (494)
Q Consensus 129 ~~l~~~l~~~~~~~~~~~Q-~~~i~~~~~~~-----~~ii~~~TGsGKT~~~~ 175 (494)
..+.+-|+-.|+. +++ ..++..++.++ .+++.||+|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 3577888777764 444 23355555553 39999999999998643
No 374
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=71.97 E-value=2.2 Score=40.89 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=20.2
Q ss_pred HHHHHhcCCc--EEEEccCCCchhHH
Q 011065 150 SIPIALTGSD--ILARAKNGTGKTAA 173 (494)
Q Consensus 150 ~i~~~~~~~~--~ii~~~TGsGKT~~ 173 (494)
.+..++.|.+ ++..|.||||||..
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyT 96 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFT 96 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEe
Confidence 5667778876 78899999999987
No 375
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=71.82 E-value=1.7 Score=36.14 Aligned_cols=16 Identities=19% Similarity=0.032 Sum_probs=13.9
Q ss_pred cEEEEccCCCchhHHh
Q 011065 159 DILARAKNGTGKTAAF 174 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (494)
.+++.|+.|||||++.
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3789999999999974
No 376
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=71.77 E-value=2.5 Score=35.76 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=14.2
Q ss_pred cEEEEccCCCchhHHh
Q 011065 159 DILARAKNGTGKTAAF 174 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (494)
.+++.|++|||||+..
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIG 19 (184)
T ss_dssp SEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4889999999999974
No 377
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=71.72 E-value=2 Score=39.79 Aligned_cols=16 Identities=19% Similarity=0.121 Sum_probs=13.9
Q ss_pred CcEEEEccCCCchhHH
Q 011065 158 SDILARAKNGTGKTAA 173 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~ 173 (494)
+.+++.||+|+|||+.
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3488899999999986
No 378
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=71.67 E-value=1.6 Score=40.80 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.|..+.|+||+|||||+.
T Consensus 79 ~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp TTCEEEEESSSCHHHHHH
T ss_pred CCCEEEEECCCCchHHHH
Confidence 456689999999999995
No 379
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=71.65 E-value=9.8 Score=44.00 Aligned_cols=41 Identities=10% Similarity=-0.014 Sum_probs=28.4
Q ss_pred CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHH
Q 011065 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELA 201 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la 201 (494)
+.+.|.||.|||||+.++..+.+.... +..++++.+--+|.
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~~~---g~~~~~i~~e~~~~ 1472 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALD 1472 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEECTTSCCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEecCCCCC
Confidence 558899999999999865555444333 23678888655554
No 380
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=71.56 E-value=2.5 Score=36.27 Aligned_cols=42 Identities=24% Similarity=0.248 Sum_probs=27.3
Q ss_pred ccccceEEeccccccc--CCCcHHHHHHHHHHCCCCCcEEEEEeecC
Q 011065 260 LKDCSMLVMDEADKLL--SPEFQPSVEQLIRFLPANRQILMFSATFP 304 (494)
Q Consensus 260 l~~~~~iViDEah~~~--~~~~~~~~~~~~~~~~~~~~~i~~SATl~ 304 (494)
+.+.+++|+||+..+. +..|...+..++.. ...+|+-|+|.+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeecC
Confidence 5678999999987663 34466666666653 233555577753
No 381
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=71.55 E-value=2.7 Score=40.93 Aligned_cols=25 Identities=40% Similarity=0.542 Sum_probs=21.2
Q ss_pred HHHHHHhcCCc--EEEEccCCCchhHH
Q 011065 149 ESIPIALTGSD--ILARAKNGTGKTAA 173 (494)
Q Consensus 149 ~~i~~~~~~~~--~ii~~~TGsGKT~~ 173 (494)
..+..++.|.+ ++..|.||||||..
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyT 155 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYT 155 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeE
Confidence 46777888877 78899999999987
No 382
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=71.54 E-value=2.2 Score=36.72 Aligned_cols=15 Identities=27% Similarity=0.284 Sum_probs=13.5
Q ss_pred EEEEccCCCchhHHh
Q 011065 160 ILARAKNGTGKTAAF 174 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~ 174 (494)
+++.|++|||||+..
T Consensus 3 I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 3 IAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCccCHHHHH
Confidence 789999999999973
No 383
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=71.47 E-value=1.7 Score=37.17 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=13.9
Q ss_pred EEEEccCCCchhHHhH
Q 011065 160 ILARAKNGTGKTAAFC 175 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~ 175 (494)
+++.|+.|||||++.-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999999743
No 384
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=71.43 E-value=2.5 Score=34.66 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=13.0
Q ss_pred EEEEccCCCchhHH
Q 011065 160 ILARAKNGTGKTAA 173 (494)
Q Consensus 160 ~ii~~~TGsGKT~~ 173 (494)
.+|.||+|+|||+.
T Consensus 26 ~~I~G~NGsGKSti 39 (149)
T 1f2t_A 26 NLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 78999999999986
No 385
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=71.41 E-value=2.6 Score=40.29 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCchhHHh
Q 011065 157 GSDILARAKNGTGKTAAF 174 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (494)
+..+.++|++|+|||+..
T Consensus 157 g~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CeEEEEEcCCCChHHHHH
Confidence 344789999999999964
No 386
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=71.40 E-value=2.2 Score=36.79 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhHHh
Q 011065 159 DILARAKNGTGKTAAF 174 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (494)
.+++.|++|||||++.
T Consensus 22 ~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQA 37 (201)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999974
No 387
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=71.39 E-value=3.5 Score=39.58 Aligned_cols=37 Identities=11% Similarity=-0.027 Sum_probs=24.8
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcC
Q 011065 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVP 196 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 196 (494)
+.-++|.|++|+|||+..+..+....... ..++++..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g---~~vlyi~~ 110 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAG---GTCAFIDA 110 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEES
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCC---CeEEEEEC
Confidence 45588999999999987555554443322 25677763
No 388
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=71.33 E-value=11 Score=35.88 Aligned_cols=71 Identities=10% Similarity=0.036 Sum_probs=52.2
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHc----CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCc------ccccCCCCC
Q 011065 356 QINQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL------FTRGIDIQA 425 (494)
Q Consensus 356 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~------~~~Gidi~~ 425 (494)
...++||.||++.-+.++++.+.+. ++.+..++|+.+.......+. ..+|+|+|.- ....+.+.+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 3458999999999999998888764 678889999988766554443 3579999952 123455677
Q ss_pred CCEEEE
Q 011065 426 VNVVIN 431 (494)
Q Consensus 426 v~~VI~ 431 (494)
+.+||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 888774
No 389
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=71.24 E-value=2.5 Score=36.62 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=16.2
Q ss_pred EEEEccCCCchhHHhHHHHHH
Q 011065 160 ILARAKNGTGKTAAFCIPALE 180 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~ 180 (494)
.++.|+.|||||+.+..-++.
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 689999999999975444444
No 390
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=70.91 E-value=2.4 Score=40.88 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=18.7
Q ss_pred HHHHhcCCc--EEEEccCCCchhHH
Q 011065 151 IPIALTGSD--ILARAKNGTGKTAA 173 (494)
Q Consensus 151 i~~~~~~~~--~ii~~~TGsGKT~~ 173 (494)
+..++.|.+ ++..|.||||||..
T Consensus 91 v~~~l~G~N~tifAYGqTGSGKTyT 115 (388)
T 3bfn_A 91 LRHLLEGQNASVLAYGPTGAGKTHT 115 (388)
T ss_dssp HHHHTTTCCEEEEEESCTTSSHHHH
T ss_pred HHHhhcCceeeEeeecCCCCCCCeE
Confidence 445667876 78899999999987
No 391
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=70.76 E-value=2.2 Score=38.34 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=13.7
Q ss_pred cEEEEccCCCchhHH
Q 011065 159 DILARAKNGTGKTAA 173 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~ 173 (494)
.+++.||+|+|||+.
T Consensus 51 g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHL 65 (254)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 489999999999986
No 392
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=70.72 E-value=2.3 Score=37.16 Aligned_cols=16 Identities=19% Similarity=0.092 Sum_probs=14.0
Q ss_pred EEEEccCCCchhHHhH
Q 011065 160 ILARAKNGTGKTAAFC 175 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~ 175 (494)
+++.|++|||||++.-
T Consensus 3 I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7899999999999743
No 393
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=70.66 E-value=2.9 Score=41.17 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=19.4
Q ss_pred HHHHHhcCCc--EEEEccCCCchhHH
Q 011065 150 SIPIALTGSD--ILARAKNGTGKTAA 173 (494)
Q Consensus 150 ~i~~~~~~~~--~ii~~~TGsGKT~~ 173 (494)
.+..++.|.+ ++..|.||||||..
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyT 153 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYT 153 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEE
Confidence 4455677876 78899999999987
No 394
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=70.61 E-value=1.4 Score=37.16 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=11.4
Q ss_pred CCcEEEEccCCCchhHHhH
Q 011065 157 GSDILARAKNGTGKTAAFC 175 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (494)
+.-+++.|+.|||||++.-
T Consensus 5 ~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CCEEEEECCC----CHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3458899999999999743
No 395
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=70.58 E-value=13 Score=41.05 Aligned_cols=74 Identities=12% Similarity=0.232 Sum_probs=57.1
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHc----CC----cEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCc-ccccCC-CCC
Q 011065 356 QINQSIIFCNSVNRVELLAKKITEL----GY----SCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-FTRGID-IQA 425 (494)
Q Consensus 356 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~----~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~-~~~Gid-i~~ 425 (494)
...++||.+|+++-+.++++.+.+. ++ .+..++|+.+...+....+.+.+ .+|+|+|+- +..-+. +.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 3468999999999999998888764 55 78999999998888878877777 899999962 211121 567
Q ss_pred CCEEEE
Q 011065 426 VNVVIN 431 (494)
Q Consensus 426 v~~VI~ 431 (494)
+.+||.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888874
No 396
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=70.37 E-value=2.1 Score=37.16 Aligned_cols=17 Identities=24% Similarity=0.077 Sum_probs=14.1
Q ss_pred CcEEEEccCCCchhHHh
Q 011065 158 SDILARAKNGTGKTAAF 174 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (494)
.-+.+.|++|||||+..
T Consensus 7 ~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 34778999999999963
No 397
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=70.17 E-value=2.1 Score=37.64 Aligned_cols=21 Identities=24% Similarity=0.093 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCchhHHhHH
Q 011065 156 TGSDILARAKNGTGKTAAFCI 176 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~ 176 (494)
.|.-+.+.||+|||||+....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 345588999999999987443
No 398
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=70.09 E-value=2.6 Score=40.54 Aligned_cols=18 Identities=39% Similarity=0.451 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHh
Q 011065 157 GSDILARAKNGTGKTAAF 174 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (494)
...+++.||+|+|||+.+
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 356999999999999864
No 399
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=70.07 E-value=3.5 Score=38.74 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHhHH
Q 011065 157 GSDILARAKNGTGKTAAFCI 176 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~ 176 (494)
++.+.+.|++|+|||+....
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~ 124 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAK 124 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34578899999999987443
No 400
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=69.90 E-value=2.6 Score=37.37 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhHHhH
Q 011065 158 SDILARAKNGTGKTAAFC 175 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (494)
..+++.|++|||||++.-
T Consensus 17 ~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458999999999999743
No 401
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=69.87 E-value=2.9 Score=38.79 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=14.3
Q ss_pred cEEEEccCCCchhHHh
Q 011065 159 DILARAKNGTGKTAAF 174 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (494)
.+++.||+|+|||+.+
T Consensus 49 ~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEESCSSSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 5899999999999874
No 402
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=69.85 E-value=1.7 Score=38.93 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.|.-+.+.||+|||||+.
T Consensus 30 ~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456688999999999985
No 403
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=69.85 E-value=2.7 Score=36.84 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchhHHhH
Q 011065 158 SDILARAKNGTGKTAAFC 175 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (494)
..+++.|++|||||++.-
T Consensus 6 ~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458899999999999743
No 404
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=69.67 E-value=2.6 Score=36.48 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhHHhH
Q 011065 157 GSDILARAKNGTGKTAAFC 175 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (494)
+.-+++.|+.|||||++.-
T Consensus 10 ~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp SCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHH
Confidence 4558999999999999743
No 405
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=69.62 E-value=2.5 Score=36.54 Aligned_cols=15 Identities=27% Similarity=0.264 Sum_probs=13.3
Q ss_pred EEEEccCCCchhHHh
Q 011065 160 ILARAKNGTGKTAAF 174 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~ 174 (494)
+.+.|+.|||||+..
T Consensus 5 i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999963
No 406
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=69.61 E-value=2.3 Score=39.67 Aligned_cols=18 Identities=17% Similarity=0.093 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.|..+.|+||+|||||+.
T Consensus 125 ~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TCSEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 566788999999999985
No 407
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=69.45 E-value=2.6 Score=39.85 Aligned_cols=16 Identities=31% Similarity=0.463 Sum_probs=14.4
Q ss_pred CcEEEEccCCCchhHH
Q 011065 158 SDILARAKNGTGKTAA 173 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~ 173 (494)
..+++.||+|+|||+.
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 4599999999999986
No 408
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=69.37 E-value=1.9 Score=37.94 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.|.-+.+.||.|||||+.
T Consensus 34 ~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp TTCCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466688999999999985
No 409
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=69.30 E-value=8.3 Score=33.70 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=20.8
Q ss_pred cCCcEEEEccCCCchhHHhHHHHHHhhhcCC
Q 011065 156 TGSDILARAKNGTGKTAAFCIPALEKIDQDN 186 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~ 186 (494)
.|.-+++.|+.|||||++.- .+.+.+...+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~-~l~~~l~~~~ 31 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARN-VVVETLEQLG 31 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHH-HHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHH-HHHHHHHHcC
Confidence 35558899999999999843 3445554443
No 410
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=69.26 E-value=2.6 Score=37.18 Aligned_cols=16 Identities=38% Similarity=0.374 Sum_probs=14.0
Q ss_pred EEEEccCCCchhHHhH
Q 011065 160 ILARAKNGTGKTAAFC 175 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~ 175 (494)
+++.|++|||||++.-
T Consensus 3 I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7899999999999743
No 411
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=69.20 E-value=2.8 Score=40.24 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=20.1
Q ss_pred HHHHHhcCCc--EEEEccCCCchhHH
Q 011065 150 SIPIALTGSD--ILARAKNGTGKTAA 173 (494)
Q Consensus 150 ~i~~~~~~~~--~ii~~~TGsGKT~~ 173 (494)
.+..++.|.+ ++..|.||||||..
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceE
Confidence 5667778876 78899999999987
No 412
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=69.11 E-value=2.6 Score=36.34 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=13.8
Q ss_pred cEEEEccCCCchhHHh
Q 011065 159 DILARAKNGTGKTAAF 174 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (494)
.+.+.|++|||||+..
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3789999999999963
No 413
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=68.95 E-value=2.7 Score=35.76 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=13.4
Q ss_pred EEEEccCCCchhHHh
Q 011065 160 ILARAKNGTGKTAAF 174 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~ 174 (494)
+++.|+.|||||++.
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999974
No 414
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=68.95 E-value=2.7 Score=36.50 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchhHHhH
Q 011065 157 GSDILARAKNGTGKTAAFC 175 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (494)
+.-+++.|+.|||||++.-
T Consensus 9 ~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4558999999999999743
No 415
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=68.91 E-value=5 Score=35.48 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=17.3
Q ss_pred cEEEEccCCCchhHHhHHHHHHh
Q 011065 159 DILARAKNGTGKTAAFCIPALEK 181 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~ 181 (494)
.+++.++.|+|||+..+--+...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 38999999999999855444433
No 416
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=68.79 E-value=2.1 Score=38.88 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhHHh
Q 011065 159 DILARAKNGTGKTAAF 174 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (494)
-++++|++|||||+..
T Consensus 6 lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4889999999999974
No 417
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=68.75 E-value=2.7 Score=37.72 Aligned_cols=18 Identities=17% Similarity=0.183 Sum_probs=15.1
Q ss_pred CcEEEEccCCCchhHHhH
Q 011065 158 SDILARAKNGTGKTAAFC 175 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (494)
..+++.|+.|||||++.-
T Consensus 30 ~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 358999999999999743
No 418
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=68.66 E-value=2.7 Score=37.69 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=14.6
Q ss_pred CcEEEEccCCCchhHHh
Q 011065 158 SDILARAKNGTGKTAAF 174 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (494)
..+++.|+.|||||+..
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45899999999999963
No 419
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=68.65 E-value=2.1 Score=39.28 Aligned_cols=15 Identities=33% Similarity=0.454 Sum_probs=13.7
Q ss_pred cEEEEccCCCchhHH
Q 011065 159 DILARAKNGTGKTAA 173 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~ 173 (494)
.+++.||+|+|||+.
T Consensus 46 GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLL 60 (274)
T ss_dssp EEEEESSTTSCHHHH
T ss_pred eEEEECCCCCcHHHH
Confidence 499999999999986
No 420
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=68.47 E-value=2.9 Score=40.18 Aligned_cols=17 Identities=29% Similarity=0.472 Sum_probs=14.3
Q ss_pred cEEEEccCCCchhHHhH
Q 011065 159 DILARAKNGTGKTAAFC 175 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (494)
-++|.||||+|||+.+-
T Consensus 25 ~~~i~G~NGaGKTTll~ 41 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFE 41 (365)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 37899999999998753
No 421
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=68.33 E-value=3.5 Score=39.29 Aligned_cols=38 Identities=16% Similarity=-0.068 Sum_probs=23.3
Q ss_pred CcEEEEccCCCchhHHhHHHHHHhhhc---CCCceEEEEEc
Q 011065 158 SDILARAKNGTGKTAAFCIPALEKIDQ---DNNVIQVVILV 195 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~---~~~~~~~lil~ 195 (494)
.-+.|.||+|||||+.....+...... ++.+..++++.
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~ 172 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 172 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEe
Confidence 458899999999998755444332111 11123667776
No 422
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=67.95 E-value=7.6 Score=43.62 Aligned_cols=52 Identities=19% Similarity=0.170 Sum_probs=38.2
Q ss_pred cEEEEccCCCchhHHhHHHHHHhhhcCC---------CceEEEEEcCcHHHHHHHHHHHHH
Q 011065 159 DILARAKNGTGKTAAFCIPALEKIDQDN---------NVIQVVILVPTRELALQTSQVCKE 210 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~---------~~~~~lil~P~~~la~q~~~~~~~ 210 (494)
..+|.|..|||||.+...-++..+...+ ...++|+|+=|+..|..+.+.+..
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 3599999999999986666666665321 234799999999888877665544
No 423
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=67.92 E-value=5.3 Score=36.19 Aligned_cols=51 Identities=8% Similarity=0.026 Sum_probs=30.2
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011065 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL 211 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (494)
|..+++.+.+|+|||+..+..+.+.+..+. ++++++=. +-..++.+.++.+
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge---~~~~~~~~-e~~~~l~~~~~~~ 71 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKLKSDN---LVGMFSIS-YPLQLIIRILSRF 71 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHHHTTC---EEEEEECS-SCHHHHHHHHHHT
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHHCCC---cEEEEEEe-CCHHHHHHHHHHc
Confidence 345788878888888665666666655433 67777622 2223345555544
No 424
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=67.83 E-value=2.2 Score=37.81 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.|.-+.+.||.|||||+.
T Consensus 29 ~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp TTCEEEEEECTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455688999999999984
No 425
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=67.74 E-value=2.7 Score=40.19 Aligned_cols=18 Identities=39% Similarity=0.287 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHh
Q 011065 157 GSDILARAKNGTGKTAAF 174 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (494)
.+.+++.||+|+|||+.+
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356999999999999863
No 426
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=67.50 E-value=4.1 Score=34.60 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=20.9
Q ss_pred EEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcH
Q 011065 160 ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (494)
++|.|++|||||.-+...+ .. +..++++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la----~~---~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI----GD---APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH----CS---CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHH----hc---CCCeEEEecCC
Confidence 6899999999998633222 22 22567777543
No 427
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=67.48 E-value=3 Score=35.83 Aligned_cols=15 Identities=27% Similarity=0.333 Sum_probs=13.4
Q ss_pred EEEEccCCCchhHHh
Q 011065 160 ILARAKNGTGKTAAF 174 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~ 174 (494)
+.|.|++|||||+..
T Consensus 11 I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 11 IGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999963
No 428
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=67.44 E-value=1.6 Score=39.59 Aligned_cols=17 Identities=35% Similarity=0.389 Sum_probs=14.7
Q ss_pred CcEEEEccCCCchhHHh
Q 011065 158 SDILARAKNGTGKTAAF 174 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (494)
+.+++.||+|+|||+.+
T Consensus 45 ~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp SCCCCBCSSCSSHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 45899999999999863
No 429
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=67.36 E-value=2.9 Score=38.26 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=13.7
Q ss_pred cEEEEccCCCchhHH
Q 011065 159 DILARAKNGTGKTAA 173 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~ 173 (494)
.+++.||+|+|||+.
T Consensus 75 gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHL 89 (278)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCcChHHHH
Confidence 489999999999986
No 430
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=67.14 E-value=1.7 Score=36.71 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=13.5
Q ss_pred cEEEEccCCCchhHHh
Q 011065 159 DILARAKNGTGKTAAF 174 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (494)
.+.|+|++|||||+..
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999864
No 431
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=67.13 E-value=2.5 Score=38.80 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.|.-+.+.||+|||||+.
T Consensus 33 ~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455688999999999995
No 432
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=66.73 E-value=3 Score=41.40 Aligned_cols=17 Identities=41% Similarity=0.473 Sum_probs=15.1
Q ss_pred CcEEEEccCCCchhHHh
Q 011065 158 SDILARAKNGTGKTAAF 174 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (494)
+.+++.||+|+|||+.+
T Consensus 64 ~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 56999999999999864
No 433
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=66.73 E-value=2.1 Score=38.89 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.|.-+.+.||+|||||+.
T Consensus 45 ~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456688999999999995
No 434
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=66.70 E-value=3.3 Score=37.35 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCchhHHh
Q 011065 157 GSDILARAKNGTGKTAAF 174 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (494)
+..+.|.|++|||||+..
T Consensus 27 g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLC 44 (252)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 445889999999999963
No 435
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=66.68 E-value=5 Score=40.32 Aligned_cols=37 Identities=16% Similarity=0.045 Sum_probs=26.0
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc
Q 011065 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (494)
|.-++|.|++|+|||+..+..+....... +..+++++
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~--g~~vl~~s 278 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAM--GKKVGLAM 278 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTS--CCCEEEEE
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhc--CCcEEEEe
Confidence 44589999999999998666665554431 23577776
No 436
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=66.67 E-value=24 Score=33.01 Aligned_cols=71 Identities=14% Similarity=0.072 Sum_probs=51.3
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHc----CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCc-c-----cccCCCCC
Q 011065 356 QINQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-F-----TRGIDIQA 425 (494)
Q Consensus 356 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~-~-----~~Gidi~~ 425 (494)
...++||.+|++.-+.++++.+.+. ++.+..++|+.........+. ..+|+|+|.- + ...+++.+
T Consensus 73 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~~l~~~~~~~~~~~~~ 147 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTLNLKN 147 (367)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTTCSCTTS
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEEecHHHHHHHHHcCCccccc
Confidence 3568999999999999999888774 577888888877655443332 4689999952 1 22356777
Q ss_pred CCEEEE
Q 011065 426 VNVVIN 431 (494)
Q Consensus 426 v~~VI~ 431 (494)
+.+||.
T Consensus 148 ~~~iIi 153 (367)
T 1hv8_A 148 VKYFIL 153 (367)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888774
No 437
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=66.59 E-value=2.7 Score=37.37 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.|.-+.+.||.|||||+.
T Consensus 33 ~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456688999999999985
No 438
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=66.58 E-value=9.6 Score=37.49 Aligned_cols=67 Identities=10% Similarity=0.090 Sum_probs=44.0
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHh-cCCCeEEEEchHHHHHhHhcCCccccccceEE
Q 011065 189 IQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL-YQPVHLLVGTPGRILDLSKKGVCILKDCSMLV 267 (494)
Q Consensus 189 ~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iV 267 (494)
.++||.||++.-+..+++.++.. ++.+..++|..... ....+ ....+|+|+|. .+.. ..++. +++||
T Consensus 178 ~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~-~~~~F~~g~~~vLVaT~-----v~e~-GiDip-v~~VI 245 (440)
T 1yks_A 178 RPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFER-EYPTIKQKKPDFILATD-----IAEM-GANLC-VERVL 245 (440)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC---------CCCSEEEESS-----STTC-CTTCC-CSEEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHH-HHhhhcCCCceEEEECC-----hhhe-eeccC-ceEEE
Confidence 37999999999998888777764 57788888843322 22222 24679999996 2333 34577 88876
No 439
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=66.58 E-value=18 Score=34.54 Aligned_cols=72 Identities=17% Similarity=0.136 Sum_probs=50.6
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHh----cCCCeEEEEchHHHHHhHhcCCccccccc
Q 011065 189 IQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL----YQPVHLLVGTPGRILDLSKKGVCILKDCS 264 (494)
Q Consensus 189 ~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~ 264 (494)
.++||.|+++.-+..+.+.+... +..+..++|+....+....+ .....|+|+|. .+.. ..++.+++
T Consensus 267 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~-Gidip~~~ 336 (412)
T 3fht_A 267 AQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCAR-GIDVEQVS 336 (412)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTS-SCCCTTEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----cccc-CCCccCCC
Confidence 48999999999988887777664 56778888887654432222 24578999995 2333 45688888
Q ss_pred eEEecc
Q 011065 265 MLVMDE 270 (494)
Q Consensus 265 ~iViDE 270 (494)
+||.-.
T Consensus 337 ~Vi~~~ 342 (412)
T 3fht_A 337 VVINFD 342 (412)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 888533
No 440
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=66.54 E-value=2.1 Score=39.07 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.|.-+.+.||+|||||+.
T Consensus 36 ~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp TTCEEEEECCTTSCHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 456688999999999995
No 441
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=66.44 E-value=6.5 Score=37.89 Aligned_cols=28 Identities=25% Similarity=0.216 Sum_probs=21.3
Q ss_pred HHHHHHHh---cCCcEEEEccCCCchhHHhH
Q 011065 148 EESIPIAL---TGSDILARAKNGTGKTAAFC 175 (494)
Q Consensus 148 ~~~i~~~~---~~~~~ii~~~TGsGKT~~~~ 175 (494)
..+|..++ .|+.+.|.|++|+|||+...
T Consensus 162 iraID~~~pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 162 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp HHHHHHHSCCBTTCEEEEECCSSSSHHHHHH
T ss_pred ceeeeeeeeecCCcEEEEecCCCCChhHHHH
Confidence 34555444 67889999999999998743
No 442
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=66.31 E-value=2.5 Score=36.94 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=13.9
Q ss_pred cEEEEccCCCchhHHh
Q 011065 159 DILARAKNGTGKTAAF 174 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (494)
.+++.|+.|||||++.
T Consensus 6 ~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 6 IVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999964
No 443
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=66.30 E-value=2.7 Score=37.85 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.|.-+.+.||+|||||+.
T Consensus 34 ~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456688999999999995
No 444
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=65.84 E-value=4.8 Score=45.61 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=23.7
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEE
Q 011065 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQIL 297 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i 297 (494)
+.+-+++|+||+-.-+|..-...+...+.....++-+|
T Consensus 542 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i 579 (1284)
T 3g5u_A 542 VRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTI 579 (1284)
T ss_dssp HHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEE
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 34567999999987666554555555555443344333
No 445
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=65.75 E-value=2.3 Score=38.73 Aligned_cols=18 Identities=28% Similarity=0.421 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.|.-+.+.||+|||||+.
T Consensus 31 ~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455688999999999985
No 446
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=65.67 E-value=6 Score=35.14 Aligned_cols=72 Identities=17% Similarity=0.277 Sum_probs=49.2
Q ss_pred CcEEEEecChhHHHHHHHHHHHc----CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCc-----ccc---cCCCCC
Q 011065 358 NQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-----FTR---GIDIQA 425 (494)
Q Consensus 358 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~-----~~~---Gidi~~ 425 (494)
.++||.+|+++-+.++++.+.+. ++.+..++++..... .+.....+..+|+|+|.- +.. .+++.+
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 175 (245)
T 3dkp_A 99 FRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLAS 175 (245)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTT
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCccccc
Confidence 47999999999999999988875 566666666532211 122233567789999952 112 478888
Q ss_pred CCEEEEc
Q 011065 426 VNVVINF 432 (494)
Q Consensus 426 v~~VI~~ 432 (494)
+.+||.-
T Consensus 176 ~~~lViD 182 (245)
T 3dkp_A 176 VEWLVVD 182 (245)
T ss_dssp CCEEEES
T ss_pred CcEEEEe
Confidence 9988853
No 447
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=65.58 E-value=2 Score=40.74 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhHHh
Q 011065 157 GSDILARAKNGTGKTAAF 174 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (494)
...+++.||+|+|||+.+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 346999999999999863
No 448
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=65.52 E-value=5.1 Score=37.17 Aligned_cols=68 Identities=12% Similarity=0.024 Sum_probs=48.0
Q ss_pred CcEEEEecChhHHHHHHHHHHHc-----CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcc------c-ccCCCCC
Q 011065 358 NQSIIFCNSVNRVELLAKKITEL-----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLF------T-RGIDIQA 425 (494)
Q Consensus 358 ~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~------~-~Gidi~~ 425 (494)
..+||.+|+++-+.++++.+... ++.+..++++...... .....+|||+|.-. . ..+++.+
T Consensus 163 ~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~ 235 (300)
T 3fmo_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (300)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGGG
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChhh
Confidence 37999999999999998888764 4567777776543221 13456899999631 1 3577888
Q ss_pred CCEEEEc
Q 011065 426 VNVVINF 432 (494)
Q Consensus 426 v~~VI~~ 432 (494)
+.+||.-
T Consensus 236 l~~lVlD 242 (300)
T 3fmo_B 236 IKVFVLD 242 (300)
T ss_dssp CSEEEET
T ss_pred ceEEEEe
Confidence 9988853
No 449
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=65.49 E-value=2 Score=38.76 Aligned_cols=16 Identities=38% Similarity=0.576 Sum_probs=14.0
Q ss_pred cEEEEccCCCchhHHh
Q 011065 159 DILARAKNGTGKTAAF 174 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (494)
.+++.|++|||||+.+
T Consensus 34 ~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEESCGGGTTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999963
No 450
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=65.48 E-value=28 Score=26.11 Aligned_cols=50 Identities=10% Similarity=0.267 Sum_probs=37.3
Q ss_pred EEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCcc
Q 011065 360 SIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR 409 (494)
Q Consensus 360 ~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~ 409 (494)
.+||....+-...+...++..|..+..++++-....|.+-++.|.....+
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvd 54 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVD 54 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCc
Confidence 35677777777788888888888888888888877777777777654433
No 451
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=65.48 E-value=2.8 Score=37.94 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.|.-+.+.||+|||||+.
T Consensus 32 ~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456688999999999995
No 452
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=65.26 E-value=2.9 Score=37.42 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.|.-+.+.||.|||||+.
T Consensus 31 ~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456688999999999995
No 453
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=65.25 E-value=2 Score=38.61 Aligned_cols=18 Identities=28% Similarity=0.302 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.|.-+.+.||+|||||+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp TTEEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455688999999999995
No 454
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=64.98 E-value=2.8 Score=34.76 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=15.0
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.|.-+.+.||.|+|||+.
T Consensus 32 ~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SCEEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 445588999999999985
No 455
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=64.78 E-value=92 Score=29.13 Aligned_cols=77 Identities=16% Similarity=0.094 Sum_probs=53.4
Q ss_pred CceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHH---h-cCCCeEEEEchHHHHHhHhcCCccccc
Q 011065 187 NVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMR---L-YQPVHLLVGTPGRILDLSKKGVCILKD 262 (494)
Q Consensus 187 ~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Ilv~T~~~l~~~~~~~~~~l~~ 262 (494)
...++||.|+++.-+..+.+.++.. +..+..++|+....+.... + .....|+|+|. .+.. ..++.+
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~-Gidip~ 311 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLAR-GIDIPT 311 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGSS-SCCCTT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhc-CCCccc
Confidence 3458999999999988877777654 5678888888765433222 2 24578999995 2333 456888
Q ss_pred cceEEeccccc
Q 011065 263 CSMLVMDEADK 273 (494)
Q Consensus 263 ~~~iViDEah~ 273 (494)
+++||.-+...
T Consensus 312 ~~~Vi~~~~p~ 322 (395)
T 3pey_A 312 VSMVVNYDLPT 322 (395)
T ss_dssp EEEEEESSCCB
T ss_pred CCEEEEcCCCC
Confidence 99988766553
No 456
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=64.71 E-value=2.7 Score=40.46 Aligned_cols=15 Identities=33% Similarity=0.687 Sum_probs=13.5
Q ss_pred EEEEccCCCchhHHh
Q 011065 160 ILARAKNGTGKTAAF 174 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~ 174 (494)
.++.|+||+|||+.+
T Consensus 28 ~vi~G~NGaGKT~il 42 (371)
T 3auy_A 28 VAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999864
No 457
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=64.47 E-value=14 Score=31.41 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=19.0
Q ss_pred CeEEEEchHHHHHhHhcCCccccccceEEecccc
Q 011065 239 VHLLVGTPGRILDLSKKGVCILKDCSMLVMDEAD 272 (494)
Q Consensus 239 ~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah 272 (494)
.+++-+.++.+...+... ...+++||+|=.-
T Consensus 55 ~~~~~~~~~~l~~~l~~l---~~~yD~viiD~~~ 85 (206)
T 4dzz_A 55 FDVFTAASEKDVYGIRKD---LADYDFAIVDGAG 85 (206)
T ss_dssp SEEEECCSHHHHHTHHHH---TTTSSEEEEECCS
T ss_pred CcEEecCcHHHHHHHHHh---cCCCCEEEEECCC
Confidence 355555556666655531 2458999999654
No 458
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=64.39 E-value=6.2 Score=34.51 Aligned_cols=30 Identities=20% Similarity=0.270 Sum_probs=20.3
Q ss_pred hcCCcEEEEccCCCchhHHhHHHHHHhhhcC
Q 011065 155 LTGSDILARAKNGTGKTAAFCIPALEKIDQD 185 (494)
Q Consensus 155 ~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~ 185 (494)
+.|.-+++.|+.|||||++.- .+.+.+...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~-~l~~~l~~~ 33 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRD-YLAERLRER 33 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHH-HHHHHHHTT
T ss_pred CCceEEEEEcCCCCCHHHHHH-HHHHHHHHc
Confidence 345568899999999999843 344555443
No 459
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=64.30 E-value=2.5 Score=38.28 Aligned_cols=18 Identities=33% Similarity=0.377 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.|.-+.+.||.|||||+.
T Consensus 40 ~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456688999999999995
No 460
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=64.18 E-value=20 Score=34.18 Aligned_cols=71 Identities=17% Similarity=0.110 Sum_probs=51.4
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc----CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCc-----c-cccCCCCCC
Q 011065 357 INQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-----F-TRGIDIQAV 426 (494)
Q Consensus 357 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~-----~-~~Gidi~~v 426 (494)
..++||.+|++.-+.++++.+.+. ++.+..++|+......... ..+..+|+|+|.- + ....++.++
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~ 164 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTPGRVLDLASRKVADLSDC 164 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEchHHHHHHHHhCCcccccC
Confidence 458999999999999998888765 6778888988775443221 2356789999952 2 234667788
Q ss_pred CEEEE
Q 011065 427 NVVIN 431 (494)
Q Consensus 427 ~~VI~ 431 (494)
.+||.
T Consensus 165 ~~vIi 169 (400)
T 1s2m_A 165 SLFIM 169 (400)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88774
No 461
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=64.17 E-value=2.1 Score=37.20 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=13.4
Q ss_pred EEEEccCCCchhHHh
Q 011065 160 ILARAKNGTGKTAAF 174 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~ 174 (494)
+++.|+.|||||+..
T Consensus 3 I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 688999999999974
No 462
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=64.13 E-value=11 Score=37.98 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=50.7
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc----CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCc-----cccc-C-CCCC
Q 011065 357 INQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-----FTRG-I-DIQA 425 (494)
Q Consensus 357 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~-----~~~G-i-di~~ 425 (494)
..++||.||++.-+.++++.+.+. ++.+..++|+.+...+...+. +..+|+|+|.- +..+ + .+.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 678999999999999888887765 889999999986554432221 13679999962 1222 3 5667
Q ss_pred CCEEEE
Q 011065 426 VNVVIN 431 (494)
Q Consensus 426 v~~VI~ 431 (494)
+.+||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888774
No 463
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=64.02 E-value=2.6 Score=38.61 Aligned_cols=18 Identities=28% Similarity=0.422 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.|.-+.|.||.|||||+.
T Consensus 44 ~Ge~~~i~G~nGsGKSTL 61 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTV 61 (271)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456688999999999985
No 464
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=63.99 E-value=2.6 Score=38.40 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.|.-+.+.||.|||||+.
T Consensus 49 ~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEEcCCCCcHHHH
Confidence 455688999999999995
No 465
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=63.84 E-value=2.6 Score=38.44 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.|.-+.+.||.|||||+.
T Consensus 32 ~Ge~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTL 49 (266)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 455688999999999985
No 466
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=63.46 E-value=5.8 Score=37.07 Aligned_cols=17 Identities=18% Similarity=0.034 Sum_probs=14.1
Q ss_pred CcEEEEccCCCchhHHh
Q 011065 158 SDILARAKNGTGKTAAF 174 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (494)
.-+.|.|++|||||+.+
T Consensus 91 ~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred EEEEEECCCCchHHHHH
Confidence 34778999999999864
No 467
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=63.44 E-value=23 Score=37.74 Aligned_cols=72 Identities=11% Similarity=0.096 Sum_probs=52.9
Q ss_pred HhcCCCcEEEEecChhHHHHHHHHHHH----cCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCc-c----------
Q 011065 353 SKLQINQSIIFCNSVNRVELLAKKITE----LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-F---------- 417 (494)
Q Consensus 353 ~~~~~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~-~---------- 417 (494)
.......++|.+++++-|.+.++.+.. .|+.+.++.|+++...|.... ..+|+++|+- +
T Consensus 120 ~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~ 193 (844)
T 1tf5_A 120 NALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMV 193 (844)
T ss_dssp HHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTC
T ss_pred HHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhh
Confidence 334556799999999999988777655 489999999999887665442 3689999962 1
Q ss_pred --cccCCCCCCCEEE
Q 011065 418 --TRGIDIQAVNVVI 430 (494)
Q Consensus 418 --~~Gidi~~v~~VI 430 (494)
...+....+.++|
T Consensus 194 ~~~~~l~lr~~~~lV 208 (844)
T 1tf5_A 194 LYKEQMVQRPLHFAV 208 (844)
T ss_dssp SSGGGCCCCCCCEEE
T ss_pred cchhhhcccCCCEEE
Confidence 1235667788776
No 468
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=63.43 E-value=4.1 Score=35.04 Aligned_cols=16 Identities=38% Similarity=0.370 Sum_probs=13.7
Q ss_pred EEEEccCCCchhHHhH
Q 011065 160 ILARAKNGTGKTAAFC 175 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~ 175 (494)
+.+.|.+|||||++.-
T Consensus 15 IgltG~~GSGKSTva~ 30 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCE 30 (192)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7789999999999743
No 469
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=63.41 E-value=4 Score=35.23 Aligned_cols=16 Identities=19% Similarity=0.077 Sum_probs=13.8
Q ss_pred cEEEEccCCCchhHHh
Q 011065 159 DILARAKNGTGKTAAF 174 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (494)
-+.+.|++|||||+..
T Consensus 24 ~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999863
No 470
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=63.33 E-value=3 Score=38.56 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=13.6
Q ss_pred EEEEccCCCchhHHh
Q 011065 160 ILARAKNGTGKTAAF 174 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~ 174 (494)
+++.|++|||||+..
T Consensus 5 I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999974
No 471
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=67.03 E-value=1.5 Score=36.78 Aligned_cols=74 Identities=18% Similarity=0.119 Sum_probs=45.1
Q ss_pred ceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHH---h-cCCCeEEEEchHHHHHhHhcCCcccccc
Q 011065 188 VIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMR---L-YQPVHLLVGTPGRILDLSKKGVCILKDC 263 (494)
Q Consensus 188 ~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Ilv~T~~~l~~~~~~~~~~l~~~ 263 (494)
+.++||.|+++..+..+.+.+... ++.+..++|+....+.... + .....|+|+|. .+ .. ..++..+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-~~----~~-Gid~~~~ 99 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-VA----AR-GIDIPDV 99 (170)
Confidence 347899999998887777766554 5667777776544322211 1 13567888883 22 22 3346677
Q ss_pred ceEEeccc
Q 011065 264 SMLVMDEA 271 (494)
Q Consensus 264 ~~iViDEa 271 (494)
++||.-+.
T Consensus 100 ~~Vi~~~~ 107 (170)
T 2yjt_D 100 SHVFNFDM 107 (170)
Confidence 77765443
No 472
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=62.98 E-value=5.3 Score=39.77 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchhHHh
Q 011065 158 SDILARAKNGTGKTAAF 174 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (494)
.++++.||+|+|||+.+
T Consensus 202 ~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp CEEEEESCTTTTTHHHH
T ss_pred CCeEEECCCCCCHHHHH
Confidence 46999999999999874
No 473
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=62.95 E-value=3.4 Score=37.22 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.|.-+.+.||.|||||+.
T Consensus 25 ~Ge~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTL 42 (249)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 456688999999999985
No 474
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=62.70 E-value=3.4 Score=37.29 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.|.-+.+.||+|||||+.
T Consensus 30 ~Ge~~~l~G~nGsGKSTL 47 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTL 47 (253)
T ss_dssp TTCEEEEECCSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455688999999999985
No 475
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=62.69 E-value=3.5 Score=37.55 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.|.-+.+.||+|||||+.
T Consensus 45 ~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456688999999999995
No 476
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=62.61 E-value=3.4 Score=37.92 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.|.-+.+.||.|||||+.
T Consensus 46 ~Ge~~~liG~NGsGKSTL 63 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTL 63 (279)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 456688999999999995
No 477
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=62.55 E-value=4.5 Score=35.04 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=13.4
Q ss_pred EEEEccCCCchhHHh
Q 011065 160 ILARAKNGTGKTAAF 174 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~ 174 (494)
.+|.|++|+|||+.+
T Consensus 26 ~~I~G~NgsGKStil 40 (203)
T 3qks_A 26 NLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 789999999999863
No 478
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=62.34 E-value=17 Score=38.73 Aligned_cols=71 Identities=14% Similarity=0.150 Sum_probs=48.1
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc----CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCc-----ccc-cC-CCCC
Q 011065 357 INQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-----FTR-GI-DIQA 425 (494)
Q Consensus 357 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~-----~~~-Gi-di~~ 425 (494)
.+++||.||++.-+.+..+.+.+. ++.+..+||+.+...+...+. +..+|+|+|.- +.. .+ .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999999999988887775 899999999986655432221 24679999952 122 23 5667
Q ss_pred CCEEEE
Q 011065 426 VNVVIN 431 (494)
Q Consensus 426 v~~VI~ 431 (494)
+.+||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788874
No 479
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=62.19 E-value=5.1 Score=38.20 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=15.3
Q ss_pred cCCc--EEEEccCCCchhHH
Q 011065 156 TGSD--ILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~--~ii~~~TGsGKT~~ 173 (494)
.|.+ ++..|.||||||..
T Consensus 82 ~G~n~tifAYGqTGSGKTyT 101 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYT 101 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHH
T ss_pred CCceeEEEeeCCCCCCCCEE
Confidence 4665 68999999999987
No 480
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=62.18 E-value=22 Score=37.87 Aligned_cols=71 Identities=10% Similarity=-0.015 Sum_probs=51.6
Q ss_pred hcCCCcEEEEecChhHHHHHHHHHHH----cCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCc-c-----cc----
Q 011065 354 KLQINQSIIFCNSVNRVELLAKKITE----LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-F-----TR---- 419 (494)
Q Consensus 354 ~~~~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~-~-----~~---- 419 (494)
......++|.++|+.-|.+.++.+.. .++.+.+++|+++...+.... ...|+|+|+. + ..
T Consensus 112 ~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~ 185 (853)
T 2fsf_A 112 ALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAF 185 (853)
T ss_dssp HTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCS
T ss_pred HHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhc
Confidence 34456799999999999887777655 489999999999876554432 3689999963 1 12
Q ss_pred ---cCCCCCCCEEE
Q 011065 420 ---GIDIQAVNVVI 430 (494)
Q Consensus 420 ---Gidi~~v~~VI 430 (494)
.+...++.++|
T Consensus 186 ~~~~~~~~~l~~lV 199 (853)
T 2fsf_A 186 SPEERVQRKLHYAL 199 (853)
T ss_dssp SGGGCCCCSCCEEE
T ss_pred cHhHhcccCCcEEE
Confidence 25567788776
No 481
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=62.02 E-value=14 Score=32.91 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=20.1
Q ss_pred cCCcEEEEccCCCchhHHhHHHHHHhhhcC
Q 011065 156 TGSDILARAKNGTGKTAAFCIPALEKIDQD 185 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~ 185 (494)
.+.-+++.|+.|||||++.- .+.+.+...
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~-~l~~~l~~~ 54 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQ-VVVETLQQN 54 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHH-HHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHH-HHHHHHHhc
Confidence 35568999999999999743 344444443
No 482
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=61.98 E-value=3.1 Score=36.87 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=13.8
Q ss_pred CcEEEEccCCCchhHH
Q 011065 158 SDILARAKNGTGKTAA 173 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~ 173 (494)
.-+.+.|+.|||||+.
T Consensus 21 ~~i~i~G~~GsGKSTl 36 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTY 36 (230)
T ss_dssp EEEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3478999999999995
No 483
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=61.78 E-value=75 Score=31.32 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=19.1
Q ss_pred HHhcCCcEEEEccCCCchhHHhHH
Q 011065 153 IALTGSDILARAKNGTGKTAAFCI 176 (494)
Q Consensus 153 ~~~~~~~~ii~~~TGsGKT~~~~~ 176 (494)
.+..|+.+++.|+.|+|||+....
T Consensus 147 pi~kGq~~~i~G~sGvGKTtL~~~ 170 (473)
T 1sky_E 147 PYIKGGKIGLFGGAGVGKTVLIQE 170 (473)
T ss_dssp CEETTCEEEEECCSSSCHHHHHHH
T ss_pred hhccCCEEEEECCCCCCccHHHHH
Confidence 345788899999999999986443
No 484
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=61.74 E-value=2.2 Score=45.23 Aligned_cols=9 Identities=22% Similarity=0.645 Sum_probs=3.7
Q ss_pred ceEEecccc
Q 011065 264 SMLVMDEAD 272 (494)
Q Consensus 264 ~~iViDEah 272 (494)
++|.+=|+.
T Consensus 440 DIIcLQEV~ 448 (727)
T 4b8c_D 440 DLLCLQEVE 448 (727)
T ss_dssp SSEEEC-CC
T ss_pred CeEEEEecC
Confidence 444444444
No 485
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=61.68 E-value=6.2 Score=34.33 Aligned_cols=71 Identities=7% Similarity=0.086 Sum_probs=48.8
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc--------CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcC-----ccc-ccCC
Q 011065 357 INQSIIFCNSVNRVELLAKKITEL--------GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD-----LFT-RGID 422 (494)
Q Consensus 357 ~~~~lVF~~~~~~~~~l~~~L~~~--------~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~-----~~~-~Gid 422 (494)
..++||.+|+++.+.++++.+.+. ++.+..++|+.+..... +.+ ....+|+|+|. .+. ..++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 458999999999999998887664 57788888886543321 111 24568999995 222 2456
Q ss_pred CCCCCEEEE
Q 011065 423 IQAVNVVIN 431 (494)
Q Consensus 423 i~~v~~VI~ 431 (494)
+.++.+||.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 677888774
No 486
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=61.63 E-value=4.2 Score=38.11 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=18.0
Q ss_pred cCCcEEEEccCCCchhHHhHHHHH
Q 011065 156 TGSDILARAKNGTGKTAAFCIPAL 179 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l 179 (494)
.+..+++.||+|+|||+.....+.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345579999999999987554444
No 487
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=61.60 E-value=1.1e+02 Score=31.65 Aligned_cols=77 Identities=21% Similarity=0.234 Sum_probs=54.4
Q ss_pred ceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHH---h-cCCCeEEEEchHHHHHhHhcCCcccccc
Q 011065 188 VIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMR---L-YQPVHLLVGTPGRILDLSKKGVCILKDC 263 (494)
Q Consensus 188 ~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Ilv~T~~~l~~~~~~~~~~l~~~ 263 (494)
+.++||.|+++..+..+.+.+.+. ++.+..++|+....+.... + ....+|+|+|. .+.. ..++.++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~~-GlDip~v 514 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLRE-GLDIPEV 514 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCST-TCCCTTE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhhC-CcccCCC
Confidence 348999999999988877777664 5677778877654333222 1 24678999986 2333 4568889
Q ss_pred ceEEecccccc
Q 011065 264 SMLVMDEADKL 274 (494)
Q Consensus 264 ~~iViDEah~~ 274 (494)
++||+-+++..
T Consensus 515 ~lVi~~d~d~~ 525 (661)
T 2d7d_A 515 SLVAILDADKE 525 (661)
T ss_dssp EEEEETTTTCC
T ss_pred CEEEEeCcccc
Confidence 99999998754
No 488
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=61.35 E-value=4.2 Score=41.87 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=14.0
Q ss_pred cEEEEccCCCchhHH
Q 011065 159 DILARAKNGTGKTAA 173 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~ 173 (494)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 799999999999984
No 489
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=61.12 E-value=4.8 Score=36.19 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.|.-+.+.||.|||||+.
T Consensus 28 ~Ge~~~l~G~nGsGKSTL 45 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTL 45 (250)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456688999999999995
No 490
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=60.78 E-value=4.2 Score=36.01 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchhHHh
Q 011065 157 GSDILARAKNGTGKTAAF 174 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (494)
+.-+++.|+.|||||++.
T Consensus 26 g~~i~i~G~~GsGKsT~~ 43 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVI 43 (229)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 445889999999999973
No 491
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=60.70 E-value=9.7 Score=46.26 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=17.1
Q ss_pred HhcCCcEEEEccCCCchhHH
Q 011065 154 ALTGSDILARAKNGTGKTAA 173 (494)
Q Consensus 154 ~~~~~~~ii~~~TGsGKT~~ 173 (494)
+..++.++++||||+|||+.
T Consensus 1264 l~~~~~vLL~GPpGtGKT~l 1283 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMI 1283 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHH
T ss_pred HHCCCeEEEECCCCCCHHHH
Confidence 34567899999999999986
No 492
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=60.46 E-value=24 Score=33.81 Aligned_cols=73 Identities=14% Similarity=0.170 Sum_probs=52.2
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHc----CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCc-----c-cccCCCCC
Q 011065 356 QINQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-----F-TRGIDIQA 425 (494)
Q Consensus 356 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~-----~-~~Gidi~~ 425 (494)
...++||.+|++..+.++++.+.+. +..+..++|+...... ......+...|+|+|.- + ...++...
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 4568999999999999999888775 5667777777654433 44555677899999952 2 23356777
Q ss_pred CCEEEE
Q 011065 426 VNVVIN 431 (494)
Q Consensus 426 v~~VI~ 431 (494)
+.+||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 888774
No 493
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=60.42 E-value=4.7 Score=37.26 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=13.2
Q ss_pred EEEEccCCCchhHHh
Q 011065 160 ILARAKNGTGKTAAF 174 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~ 174 (494)
+.|+|++|||||+.+
T Consensus 34 i~I~G~sGsGKSTla 48 (290)
T 1odf_A 34 IFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999864
No 494
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=60.40 E-value=3.7 Score=37.74 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=14.1
Q ss_pred EEEEccCCCchhHHhH
Q 011065 160 ILARAKNGTGKTAAFC 175 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~ 175 (494)
++|.|+.|||||++.-
T Consensus 78 I~I~G~~GSGKSTva~ 93 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQ 93 (281)
T ss_dssp EEEEECTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8899999999999754
No 495
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=60.34 E-value=3.2 Score=38.36 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCchhHH
Q 011065 156 TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (494)
.|.-+.+.||.|||||+.
T Consensus 63 ~Ge~~~i~G~NGsGKSTL 80 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSL 80 (290)
T ss_dssp TTCEEEEEESTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 456688999999999995
No 496
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=60.08 E-value=8.3 Score=29.32 Aligned_cols=37 Identities=14% Similarity=0.269 Sum_probs=32.2
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCC
Q 011065 356 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKML 392 (494)
Q Consensus 356 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 392 (494)
...+++|||.+-..+...+..|.+.|+++..+.|++.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 3458999999988899999999999999999999854
No 497
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=60.04 E-value=28 Score=33.34 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=49.8
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHh----cCCCeEEEEchHHHHHhHhcCCccccccc
Q 011065 189 IQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL----YQPVHLLVGTPGRILDLSKKGVCILKDCS 264 (494)
Q Consensus 189 ~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~ 264 (494)
.++||.|+++..+..+.+.+... ++.+..++|+....+....+ .....|+|+|. .+.. ..++.+++
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~-Gidi~~v~ 346 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWAR-GLDVPQVS 346 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGSS-SCCCTTEE
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhC-cCCcccCC
Confidence 38999999999988777777654 56788888887654332221 24678999995 2333 45678888
Q ss_pred eEEecc
Q 011065 265 MLVMDE 270 (494)
Q Consensus 265 ~iViDE 270 (494)
+||.-+
T Consensus 347 ~Vi~~~ 352 (410)
T 2j0s_A 347 LIINYD 352 (410)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 887533
No 498
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=60.03 E-value=3.8 Score=36.82 Aligned_cols=15 Identities=20% Similarity=0.293 Sum_probs=13.5
Q ss_pred EEEEccCCCchhHHh
Q 011065 160 ILARAKNGTGKTAAF 174 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~ 174 (494)
+.|.|+.|||||+..
T Consensus 25 I~I~G~~GSGKST~a 39 (252)
T 1uj2_A 25 IGVSGGTASGKSSVC 39 (252)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999974
No 499
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=59.93 E-value=5.4 Score=38.12 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=0.0
Q ss_pred HhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEE
Q 011065 154 ALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVI 193 (494)
Q Consensus 154 ~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~li 193 (494)
+..|.-+.+.||.|||||+ ++-++.-+.....+ .+.+
T Consensus 51 i~~Gei~~IiGpnGaGKST--Llr~i~GL~~p~~G-~I~i 87 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKST--LIRCVNLLERPTEG-SVLV 87 (366)
T ss_dssp ECTTCEEEEECCTTSSHHH--HHHHHHTSSCCSEE-EEEE
T ss_pred EcCCCEEEEEcCCCchHHH--HHHHHhcCCCCCce-EEEE
No 500
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=59.34 E-value=5.2 Score=39.35 Aligned_cols=21 Identities=33% Similarity=0.301 Sum_probs=0.0
Q ss_pred CcEEEEccCCCchhHHhHHHH
Q 011065 158 SDILARAKNGTGKTAAFCIPA 178 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~ 178 (494)
+++++.||+|+|||+.+-..+
T Consensus 51 ~~iLl~GppGtGKT~lar~lA 71 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLA 71 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHH
Done!