Query 011066
Match_columns 494
No_of_seqs 234 out of 437
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 07:44:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011066.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011066hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1348 Asparaginyl peptidases 100.0 6E-166 1E-170 1246.6 40.5 452 33-493 26-477 (477)
2 PF01650 Peptidase_C13: Peptid 100.0 7.1E-87 1.5E-91 661.1 23.3 256 60-330 1-256 (256)
3 KOG1349 Gpi-anchor transamidas 100.0 1.9E-62 4.1E-67 477.5 18.2 259 57-330 26-290 (309)
4 COG5206 GPI8 Glycosylphosphati 100.0 1.1E-54 2.4E-59 425.5 17.4 239 58-311 27-268 (382)
5 PF00656 Peptidase_C14: Caspas 99.1 1.8E-10 4E-15 110.6 7.7 182 60-302 1-230 (248)
6 KOG1546 Metacaspase involved i 98.3 6.1E-06 1.3E-10 84.9 12.4 131 54-227 58-211 (362)
7 smart00115 CASc Caspase, inter 96.8 0.026 5.7E-07 56.0 13.3 184 58-303 7-214 (241)
8 cd00032 CASc Caspase, interleu 96.5 0.058 1.3E-06 53.5 13.4 183 58-303 8-218 (243)
9 PF14538 Raptor_N: Raptor N-te 90.6 0.26 5.6E-06 46.4 3.6 72 138-228 71-152 (154)
10 PF12770 CHAT: CHAT domain 82.9 1.1 2.5E-05 44.2 3.4 67 133-223 123-201 (287)
11 PF01364 Peptidase_C25: Peptid 65.8 7.8 0.00017 40.7 4.4 103 170-302 239-351 (378)
12 KOG1017 Predicted uracil phosp 64.4 6 0.00013 39.3 3.0 23 79-101 204-226 (267)
13 COG4249 Uncharacterized protei 54.7 9.4 0.0002 41.1 2.7 61 166-230 131-207 (380)
14 PF03568 Peptidase_C50: Peptid 40.7 25 0.00054 37.5 3.2 43 168-227 308-350 (383)
15 PF11181 YflT: Heat induced st 38.3 40 0.00087 29.2 3.7 29 75-103 7-35 (103)
16 TIGR02855 spore_yabG sporulati 38.0 28 0.00061 36.1 3.0 102 113-236 103-222 (283)
17 PRK10834 vancomycin high tempe 32.6 40 0.00086 34.2 3.0 36 61-99 83-118 (239)
18 PF05582 Peptidase_U57: YabG p 32.5 36 0.00078 35.4 2.7 102 113-236 104-223 (287)
19 PF12554 MOZART1: Mitotic-spin 31.7 71 0.0015 24.8 3.6 26 450-475 21-46 (48)
20 cd06259 YdcF-like YdcF-like. Y 26.5 56 0.0012 29.3 2.7 38 60-99 35-72 (150)
21 PF02698 DUF218: DUF218 domain 26.1 63 0.0014 29.1 2.9 35 63-99 41-75 (155)
22 KOG1552 Predicted alpha/beta h 23.7 73 0.0016 32.8 3.1 42 77-121 112-161 (258)
23 COG4566 TtrR Response regulato 21.4 92 0.002 30.9 3.2 35 171-206 78-121 (202)
24 cd06183 cyt_b5_reduct_like Cyt 21.3 49 0.0011 31.5 1.3 35 59-100 200-234 (234)
25 KOG3332 N-acetylglucosaminyl p 20.7 2E+02 0.0043 29.3 5.4 64 32-104 45-110 (247)
No 1
>KOG1348 consensus Asparaginyl peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-166 Score=1246.56 Aligned_cols=452 Identities=65% Similarity=1.139 Sum_probs=434.7
Q ss_pred cCccccccccCCCCCCCCCCCCCCCCCeEEEEEeccCCCCcchhhHHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCC
Q 011066 33 LPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENP 112 (494)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wAVlVagS~gw~NYRHqadv~~~Yq~L~~~Gi~denIIlmm~DDia~n~~Np 112 (494)
+|.-.++|++| .++++.+|++||||||||+||||||||||||||||+||++|||+||||||||||||+||+||
T Consensus 26 ~~~la~~~~~p-------~d~~ddggt~waVLVAGSngyyNYRHQADvcHAYqiLrkgGikeEnIvv~MYDDIA~~~~NP 98 (477)
T KOG1348|consen 26 LPLLASGFARP-------ADDDDDGGTRWAVLVAGSNGYYNYRHQADVCHAYQILRKGGIKEENIVVMMYDDIANNEENP 98 (477)
T ss_pred CccccccccCc-------CcCCccCceeEEEEEecCCcccchhhhhhHHHHHHHHHhcCCCchhEEEEEehhhhcCCCCC
Confidence 44444566765 23344448999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEeeCCCCCCccCCccccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCCcccCCCCCCc
Q 011066 113 RPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYI 192 (494)
Q Consensus 113 ~pG~i~n~~~g~dvY~gv~iDY~g~~Vt~~nfl~VL~G~~~~~~~~s~kvl~S~~~D~VFIY~tgHGg~g~l~fpd~~~L 192 (494)
+||+|||+|+|+|||+||++||||++||++||++||+|++++++|||||||+|+|||||||||+||||||+|+||+++.|
T Consensus 99 rpG~iiN~P~G~DvY~GvpkDYtg~~Vt~~Nf~aVllGd~savkGGsGKV~~SgpnDhiFiYytDHG~pGvl~mP~~~~l 178 (477)
T KOG1348|consen 99 RPGVIINRPNGKDVYQGVPKDYTGEDVTPQNFLAVLLGDASAVKGGSGKVLKSGPNDHIFIYYTDHGGPGVLGMPTSPDL 178 (477)
T ss_pred CCceeecCCCchhhhcCCCCcccCCcCCHHHHHHHHhcccccccCCCceeeccCCCceEEEEEecCCCCceEecCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCceEEEEeccccccccccccCCCCCcEEEEeecCCCCccccccCCCCCCCCCCCccccchhhh
Q 011066 193 YADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLY 272 (494)
Q Consensus 193 ~a~dL~~~L~~m~~~~~Ykklv~~iEAC~SGSmf~~llp~~~nV~~iTASn~~EsSya~yc~~~~~~~~~~~~tcLgD~f 272 (494)
+++||+++|++||+.++||+||||+||||||||||++||+++||||+||||+.||||+||||+++|+||+++.|||||+|
T Consensus 179 ~akdlnevL~kmhk~k~Y~~mvfYlEACESGSmfegiLp~~lnIYatTAaNa~ESSwgtycp~~~psppse~~tcLGDly 258 (477)
T KOG1348|consen 179 YAKDLNEVLKKMHKSKTYKKMVFYLEACESGSMFEGILPKNLNIYATTAANARESSWGTYCPGEYPSPPSEYSTCLGDLY 258 (477)
T ss_pred hHHHHHHHHHHHHhccchheEEEEeeeccCcchhhhhccCCCcEEEeecCCccccccceeCCCCCCCChhhcccccccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccccccccccHHHHHHHHHhhccCCCCCCCCceeecCCcccccchhhhcccCCCCCCccccCCCCCCcCCccc
Q 011066 273 SIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAV 352 (494)
Q Consensus 273 S~~wmedsd~~~l~~eTl~~qf~~vk~~t~~~~~~~Shv~~yGd~~~~~~~l~~f~G~~~~~~~~~~~~~~~~~~~~~~v 352 (494)
||+||||||.|||++|||+|||+.||+||+....+|||||||||..|++++|..|||.+|+++||+|. +.+..+++..+
T Consensus 259 SV~WmeDSd~hdL~kETL~qQYhlVK~rt~~s~s~gsHVmqyGd~~iske~l~lfqG~~pa~~nf~l~-~~s~~~~s~~~ 337 (477)
T KOG1348|consen 259 SVNWMEDSDVHDLKKETLHQQYHLVKKRTNTSYSYGSHVMQYGDKTISKEKLMLFQGMKPANENFTLP-ASSHKSPSGLT 337 (477)
T ss_pred eeeeeccCccccchHHHHHHHHHHHHHhcCCCCCCcceeeecCcchhhHHHHHHHcCCCcccCCCCCC-ccCcCCccccC
Confidence 99999999999999999999999999999998779999999999999999999999999999999887 55566688999
Q ss_pred cCcchhHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccccCCCCCCCcCccchHH
Q 011066 353 NQRDADLLHFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCLK 432 (494)
Q Consensus 353 ~~rda~L~~l~~k~~~~~~~~~~k~~a~~~l~~~l~~R~~id~sv~~I~~ll~g~~~~~~~l~~~r~~g~plvddwdCyK 432 (494)
||||+||++||+|++++++++.++.++++||.+++.||+|||++|..|+.++||. ++..+|+.+|+.|+||+|||+|+|
T Consensus 338 n~rD~~L~~l~~k~rka~dgs~~s~e~~k~i~~~~~hR~~id~sV~~I~~llf~~-~~~~~l~~vr~~g~Plvddw~C~k 416 (477)
T KOG1348|consen 338 NQRDAPLLHLWRKYRKANDGSAESRELQKEILRHKDHRKHIDKSVRLIVSLLFGS-EGEAVLNQVRSEGQPLVDDWDCLK 416 (477)
T ss_pred CCCCccHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chHHHHHHhhcCCCCccchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988 556789999999999999999999
Q ss_pred HHHHHHhhhcCCCchhhhhHHHHHHHHhccCCCHHHHHHHHHhhhcCCCCCCCCCcccCCC
Q 011066 433 SLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSSLDKGFS 493 (494)
Q Consensus 433 ~~V~~Fe~~CGsl~qY~~k~~r~faNlC~~G~~~~~m~~a~~~~C~~~~~~~~~~~~~~~~ 493 (494)
++|++|++|||+++||||||||+|+||||.|++.++|.+|+.++|.+++..+|+++.+|||
T Consensus 417 ~~v~~F~~hCg~~~~YglKh~~~~aN~Cn~g~~~e~~~~A~~~aC~~~~~~~~~~~~~gfs 477 (477)
T KOG1348|consen 417 SAVRHFETHCGSTYEYGLKHMRVLANMCNKGVPLEQIELAMDQACLGIYTEPWSSLRRGFS 477 (477)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhHhcCCccccchhhcccCC
Confidence 9999999999999999999999999999999999999999999999999999999999997
No 2
>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C13 (legumain family, clan CD). A type example is legumain from Canavalia ensiformis (Jack bean, Horse bean). The blood fluke parasite Schistosoma mansoni has two cysteine proteases in its digestive tract, one a cathepsin B-like protease, the other termed hemoglobinase [, ]. The latter has been hard to purify, free of cathepsin B, and expressed forms in Escherichia coli prove to be inactive, suggesting that hemoglobinase may act in association with cathepsin B [, ]. Plant vacuolar processing enzyme and legumain from legumes [] have been shown to have sequence and functional similarity to hemoglobinase. The catalytic residues of the family are currently unknown, but sequence alignments reveal one totally conserved cysteine and two totally conserved histidines.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=100.00 E-value=7.1e-87 Score=661.09 Aligned_cols=256 Identities=55% Similarity=0.962 Sum_probs=248.1
Q ss_pred eEEEEEeccCCCCcchhhHHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCCccCCccccCCCCCC
Q 011066 60 RWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDV 139 (494)
Q Consensus 60 ~wAVlVagS~gw~NYRHqadv~~~Yq~L~~~Gi~denIIlmm~DDia~n~~Np~pG~i~n~~~g~dvY~gv~iDY~g~~V 139 (494)
+||||||||++|+|||||||+||+||+||++|+|+|||||||||||||||+||+||+||++|+|.|+|+||+|||+|.+|
T Consensus 1 ~wAvlvagS~~~~NYRh~ad~~~~Y~~l~~~G~~~~~Iil~~~dd~a~~~~Np~~g~i~~~~~~~n~y~~~~iDY~g~~v 80 (256)
T PF01650_consen 1 NWAVLVAGSNGWFNYRHQADVCHAYQLLKRNGIPDENIILMMYDDIACNPRNPFPGKIFNDPDGTNVYKGVEIDYRGEDV 80 (256)
T ss_pred CEEEEEeccCCceeeeEehHHHHHHHHHHHcCCCCceEEEEecCCccchhhCCCCceEEeCCCcccccCCcccccccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCCcccCCCCCCcCHHHHHHHHHHHHHcCCCceEEEEecc
Q 011066 140 TVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEA 219 (494)
Q Consensus 140 t~~nfl~VL~G~~~~~~~~s~kvl~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~m~~~~~Ykklv~~iEA 219 (494)
|+++|++||+|+++ + +++|||+++++|+|||||+||||+|+|+||+.+.|+++||.++|++|+++++||||||++||
T Consensus 81 ~~~~fl~vL~G~~~-~--~~~kvl~s~~~D~vfiy~~~HG~~~~l~~~~~~~l~~~~L~~~L~~m~~~~~y~~lv~~vea 157 (256)
T PF01650_consen 81 TPENFLNVLTGDKS-V--PSGKVLNSTENDNVFIYFTGHGGPGFLKFPDGEELTADDLADALDKMHEKKRYKKLVFVVEA 157 (256)
T ss_pred CHHHHHHHhcCCCC-C--CccccccCCCCCeEEEEEeccCCCCcccCCCcccccHHHHHHHHHHHHhhCCcceEEEEEec
Confidence 99999999999998 5 57899999999999999999999999999988889999999999999999999999999999
Q ss_pred ccccccccccCCCCCcEEEEeecCCCCccccccCCCCCCCCCCCccccchhhhhhhccccccccccccccHHHHHHHHHh
Q 011066 220 CESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKT 299 (494)
Q Consensus 220 C~SGSmf~~llp~~~nV~~iTASn~~EsSya~yc~~~~~~~~~~~~tcLgD~fS~~wmedsd~~~l~~eTl~~qf~~vk~ 299 (494)
|||||||+. |++++||++||||+++|+||+|||+ +++++|||||+||++||++++.++++.+||.+||+.||+
T Consensus 158 C~SGs~~~~-L~~~~nv~~iTAa~~~e~Sy~~~~~------~~~~~~~l~d~fs~~~m~~~~~~~~~~~Tl~~~f~~v~~ 230 (256)
T PF01650_consen 158 CYSGSFFEG-LLKSPNVYVITAANADESSYGCYCS------DDSIGTYLGDAFSYNWMEDSDSHPLSEETLDDQFEYVKR 230 (256)
T ss_pred ccccchhhc-cCCCCCEEEEecCCccccccccccc------ccccccEeHHHHHHHhhhhhccCCccccCHHHHHHHHHH
Confidence 999999999 6788999999999999999999993 258999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCceeecCCcccccchhhhccc
Q 011066 300 RTASYNSYGSHVMQYGDIGLSKNNLFTYLGT 330 (494)
Q Consensus 300 ~t~~~~~~~Shv~~yGd~~~~~~~l~~f~G~ 330 (494)
+|.. |||++|||+++.+++|++|||+
T Consensus 231 ~~~~-----shv~~~gd~s~~~~~v~~f~g~ 256 (256)
T PF01650_consen 231 KTTG-----SHVQQYGDPSIPQLPVSEFQGT 256 (256)
T ss_pred hccc-----chHHhcCCCCccccCHHHhcCC
Confidence 9975 9999999999999999999995
No 3
>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-62 Score=477.49 Aligned_cols=259 Identities=27% Similarity=0.494 Sum_probs=229.3
Q ss_pred CCCeEEEEEeccCCCCcchhhHHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCC-CCCccC-CccccC
Q 011066 57 VGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPH-GDDVYK-GVPKDY 134 (494)
Q Consensus 57 ~~~~wAVlVagS~gw~NYRHqadv~~~Yq~L~~~Gi~denIIlmm~DDia~n~~Np~pG~i~n~~~-g~dvY~-gv~iDY 134 (494)
+++||||||++||+|+||||.|||+.+|..+|+.||||+|||+|++||+|||+|||+||.+|++.+ +.|+|. .|++||
T Consensus 26 htnNwAVLv~tSRfwfNYRH~aNvl~~YrsvKrlGipDsqIilmladd~acn~RN~~pg~Vy~n~~~~~nlygd~vevdy 105 (309)
T KOG1349|consen 26 HTNNWAVLVCTSRFWFNYRHVANVLSVYRSVKRLGIPDSQIILMLADDMACNSRNPRPGTVYNNENHALNLYGDDVEVDY 105 (309)
T ss_pred ccCceEEEEecchhhhhHHHHHHHHHHHHHHHHcCCCcccEEEEeccccccccCCCCCcceeccccccccccCCcceeec
Confidence 589999999999999999999999999999999999999999999999999999999999999885 679995 578999
Q ss_pred CCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCCcccCCCCCCcCHHHHHHHHHHHHHcCCCceEE
Q 011066 135 TGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLV 214 (494)
Q Consensus 135 ~g~~Vt~~nfl~VL~G~~~~~~~~s~kvl~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~m~~~~~Ykklv 214 (494)
+|.+||+|||+++|+|+.+.-+|.|+| |.+++.+|||||+|||||+|||+|||.++|+.+||++++++|++++||++|+
T Consensus 106 rgyevtvEnflr~LTgR~~~~tprSKr-lltDe~SNIlIYmtGHGgd~FlKFqd~eelts~dLadai~qm~e~~Ryneil 184 (309)
T KOG1349|consen 106 RGYEVTVENFLRVLTGRHPNNTPRSKR-LLTDEGSNILIYLTGHGGDGFLKFQDAEELTSDDLADAIQQMWEKKRYNEIL 184 (309)
T ss_pred ccchhHHHHHHHHHcCCCCCCCchhhh-hcccCCCcEEEEEccCCCccceecccHHHhhhHHHHHHHHHHHHhhhhceEE
Confidence 999999999999999999999998876 4589999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccccccccCCCCCcEEEEeecCCCCccccccCCCCCCCCCCCccccchhhhhhhcccccccc-ccccccHHHH
Q 011066 215 FYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIH-NLRTETLHQQ 293 (494)
Q Consensus 215 ~~iEAC~SGSmf~~llp~~~nV~~iTASn~~EsSya~yc~~~~~~~~~~~~tcLgD~fS~~wmedsd~~-~l~~eTl~~q 293 (494)
|++|+|+|.||++.+. .+||+++++|-.+|+||+++.++ ++|.++-|-|++..++-.++. .....||.++
T Consensus 185 ~miDTCQaasly~~~~--sPNVLav~SS~~ge~SySh~~d~-------~Igv~vIDrftyy~l~flek~~~~~~~~l~dl 255 (309)
T KOG1349|consen 185 FMIDTCQAASLYERFY--SPNVLAVASSLVGEPSYSHHSDS-------DIGVYVIDRFTYYTLEFLEKGIGAKNRTLQDL 255 (309)
T ss_pred EEeeccchHHHHHhhc--CCCeEEEeecccCCcccccCCCc-------ccceeeeccchHHHHHHHHhcccchhhhHHHH
Confidence 9999999999999874 35999999999999999999864 899999999999877766553 3334589999
Q ss_pred HHHHHhhccCCCCCCCCceeecCC---cccccchhhhccc
Q 011066 294 YELVKTRTASYNSYGSHVMQYGDI---GLSKNNLFTYLGT 330 (494)
Q Consensus 294 f~~vk~~t~~~~~~~Shv~~yGd~---~~~~~~l~~f~G~ 330 (494)
|+..-.+.- +|||-.--|+ ..++-++.+|+|.
T Consensus 256 ~~s~~~~~~-----~St~gvr~dl~~r~~~~v~itDFFg~ 290 (309)
T KOG1349|consen 256 FDSCPKRLL-----GSTPGVRTDLYQRDPKDVLITDFFGS 290 (309)
T ss_pred HHhCChhhh-----cCCcCcccccccCCcccceeeeeccc
Confidence 998866554 4776443333 2344556777775
No 4
>COG5206 GPI8 Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-54 Score=425.52 Aligned_cols=239 Identities=25% Similarity=0.457 Sum_probs=214.2
Q ss_pred CCeEEEEEeccCCCCcchhhHHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCC-CCCcc-CCccccCC
Q 011066 58 GTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPH-GDDVY-KGVPKDYT 135 (494)
Q Consensus 58 ~~~wAVlVagS~gw~NYRHqadv~~~Yq~L~~~Gi~denIIlmm~DDia~n~~Np~pG~i~n~~~-g~dvY-~gv~iDY~ 135 (494)
++|||||+++||+|+||||.|||+.+|..+|+.||||+|||+|.|||.|||.||-+||.+|++.+ +.|+| +.++|||+
T Consensus 27 tnNwAvLlstSRfwfNYRHmANVl~~Yr~vkrlGipDsQIilm~~dd~acnsRnlfpgsvf~N~Dra~dlyge~~eidY~ 106 (382)
T COG5206 27 TNNWAVLLSTSRFWFNYRHMANVLVFYRVVKRLGIPDSQIILMSYDDQACNSRNLFPGSVFNNSDRAGDLYGEDSEIDYS 106 (382)
T ss_pred CCceEEEEecccceeehhhhhhHHHHHHHHHHcCCCcceEEEEechhhhhhhcccCCcccccCcccccceeCcccccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999877 56777 46799999
Q ss_pred CCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCCcccCCCCCCcCHHHHHHHHHHHHHcCCCceEEE
Q 011066 136 GEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVF 215 (494)
Q Consensus 136 g~~Vt~~nfl~VL~G~~~~~~~~s~kvl~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~m~~~~~Ykklv~ 215 (494)
|.+||+++|.+.|+.+...-+|.|++ +..++++|||||++||||++||+|+|-++++.+||++++.+|+++|+|++++|
T Consensus 107 gyevTve~firLLt~r~~en~p~sKr-lltdE~SNIfIYmtGHGgd~FlKFqdaeemtseDladai~ql~~~kRyNeIlf 185 (382)
T COG5206 107 GYEVTVEVFIRLLTARSGENHPKSKR-LLTDESSNIFIYMTGHGGDAFLKFQDAEEMTSEDLADAISQLAAKKRYNEILF 185 (382)
T ss_pred cccchHHHHHHHHHhhccCCChhhhh-hcccccCcEEEEEccCCCccceecccHHHhhhHHHHHHHHHHHHhhhhceEEE
Confidence 99999999999999988877777755 55799999999999999999999999999999999999999999999999999
Q ss_pred EeccccccccccccCCCCCcEEEEeecCCCCccccccCCCCCCCCCCCccccchhhhhhhcccccccc-ccccccHHHHH
Q 011066 216 YLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIH-NLRTETLHQQY 294 (494)
Q Consensus 216 ~iEAC~SGSmf~~llp~~~nV~~iTASn~~EsSya~yc~~~~~~~~~~~~tcLgD~fS~~wmedsd~~-~l~~eTl~~qf 294 (494)
+||+|++.+|++.... +||+++.+|.-++|||+++.+. +++.-.-|-|++..++-.+.- --++.||++++
T Consensus 186 miDTCQAnaly~k~ys--PNvLavgsSeig~ssyShhsd~-------~IgvaVIDrFty~~l~fle~id~~skltlqDL~ 256 (382)
T COG5206 186 MIDTCQANALYDKSYS--PNVLAVGSSEIGQSSYSHHSDS-------LIGVAVIDRFTYFFLKFLEKIDIGSKLTLQDLL 256 (382)
T ss_pred EeeccccchhhhhccC--CceEEEeccccCCccccccchh-------hhhHHHhhcchHHHHHHHhhcCcCCeeEHHHHH
Confidence 9999999999998643 5999999999999999999864 677777888888877655543 34578999988
Q ss_pred HHHHhhccCCCCCCCCc
Q 011066 295 ELVKTRTASYNSYGSHV 311 (494)
Q Consensus 295 ~~vk~~t~~~~~~~Shv 311 (494)
...-. ...+|||
T Consensus 257 ~s~n~-----e~ihS~~ 268 (382)
T COG5206 257 ASLNK-----EPIHSHV 268 (382)
T ss_pred HhcCc-----ccccCCC
Confidence 76543 2357998
No 5
>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences represent the p20 (20kDa) and p10 (10kDa) subunits of caspases, which together form the catalytic domain of the caspase and are derived from the p45 (45 kDa) precursor (IPR002398 from INTERPRO) []. Caspases (Cysteine-dependent ASPartyl-specific proteASE) are cysteine peptidases that belong to the MEROPS peptidase family C14 (caspase family, clan CD) based on the architecture of their catalytic dyad or triad []. Caspases are tightly regulated proteins that require zymogen activation to become active, and once active can be regulated by caspase inhibitors. Activated caspases act as cysteine proteases, using the sulphydryl group of a cysteine side chain for catalysing peptide bond cleavage at aspartyl residues in their substrates. The catalytic cysteine and histidine residues are on the p20 subunit after cleavage of the p45 precursor. Caspases are mainly involved in mediating cell death (apoptosis) [, , ]. They have two main roles within the apoptosis cascade: as initiators that trigger the cell death process, and as effectors of the process itself. Caspase-mediated apoptosis follows two main pathways, one extrinsic and the other intrinsic or mitochondrial-mediated. The extrinsic pathway involves the stimulation of various TNF (tumour necrosis factor) cell surface receptors on cells targeted to die by various TNF cytokines that are produced by cells such as cytotoxic T cells. The activated receptor transmits the signal to the cytoplasm by recruiting FADD, which forms a death-inducing signalling complex (DISC) with caspase-8. The subsequent activation of caspase-8 initiates the apoptosis cascade involving caspases 3, 4, 6, 7, 9 and 10. The intrinsic pathway arises from signals that originate within the cell as a consequence of cellular stress or DNA damage. The stimulation or inhibition of different Bcl-2 family receptors results in the leakage of cytochrome c from the mitochondria, and the formation of an apoptosome composed of cytochrome c, Apaf1 and caspase-9. The subsequent activation of caspase-9 initiates the apoptosis cascade involving caspases 3 and 7, among others. At the end of the cascade, caspases act on a variety of signal transduction proteins, cytoskeletal and nuclear proteins, chromatin-modifying proteins, DNA repair proteins and endonucleases that destroy the cell by disintegrating its contents, including its DNA. The different caspases have different domain architectures depending upon where they fit into the apoptosis cascades, however they all carry the catalytic p10 and p20 subunits. Caspases can have roles other than in apoptosis, such as caspase-1 (interleukin-1 beta convertase) (3.4.22.36 from EC), which is involved in the inflammatory process. The activation of apoptosis can sometimes lead to caspase-1 activation, providing a link between apoptosis and inflammation, such as during the targeting of infected cells. Caspases may also be involved in cell differentiation [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1M72_C 2NN3_C 3V4L_A 3IBF_B 2QLF_D 2QLB_C 3IBC_B 2QL9_A 3R5K_B 3H1P_A ....
Probab=99.09 E-value=1.8e-10 Score=110.56 Aligned_cols=182 Identities=23% Similarity=0.278 Sum_probs=124.9
Q ss_pred eEEEEEeccCC-CCcchhh--HHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCCccCCccccCCC
Q 011066 60 RWAVLLAGSNG-FWNYRHQ--ADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTG 136 (494)
Q Consensus 60 ~wAVlVagS~g-w~NYRHq--adv~~~Yq~L~~~Gi~denIIlmm~DDia~n~~Np~pG~i~n~~~g~dvY~gv~iDY~g 136 (494)
+|||||+-+.+ -.+-++- .|+-.+.+.|++.|++.++| ++ +
T Consensus 1 ~~AliIg~~~y~~~~~L~~~~~D~~~~~~~L~~~gf~~~~~-l~--~--------------------------------- 44 (248)
T PF00656_consen 1 KRALIIGVNYYQNPPPLPGAVNDAEAMAEALEKLGFDVENI-LI--D--------------------------------- 44 (248)
T ss_dssp EEEEEEEESSTSSTCHCTTHHHHHHHHHHHHHHTTEEEEEE-EE--E---------------------------------
T ss_pred CEEEEEEeeCCCCCCCCCCHHHHHHHHHHHHHHcCCceeec-cc--c---------------------------------
Confidence 59999999874 2233333 78999999999999999999 32 2
Q ss_pred CCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCC--C----cccCCCCCCcCHHH---HHHHHHHHHHc
Q 011066 137 EDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGP--G----VLGMPTSRYIYADE---LIDVLKKKHAS 207 (494)
Q Consensus 137 ~~Vt~~nfl~VL~G~~~~~~~~s~kvl~S~~~D~VFIY~tgHGg~--g----~l~fpd~~~L~a~d---L~~~L~~m~~~ 207 (494)
++|.+++...|+--. -...++|.++|||+|||.. + .+.-.++..+..+. +.+.|..+..+
T Consensus 45 -~~t~~~i~~~l~~l~----------~~~~~~D~~~~yfsGHG~~~~~~~~~~~~~~d~~~~~~d~~~~~~~~l~~~~~~ 113 (248)
T PF00656_consen 45 -NATRANILKALRELL----------QRAQPGDSVVFYFSGHGIQVDGEGGDEDSGYDGYLLPLDANLILDDELRDLLCK 113 (248)
T ss_dssp -SSSHHHHHHHHHHHH----------TSGGTCSEEEEEEESEEETETTCCSTEEEETSSEEEEHHHHEEHHHHTSTTTTG
T ss_pred -chHHHHHHHHHhhhh----------ccCCCCCeeEEEEeccccccCCccCcccccccceeeecchhhhHHHHHhhhhhh
Confidence 278999999988211 1123789999999999965 1 11111333344444 67777666555
Q ss_pred C-CCc-eEEEEeccccccccccccC----------------------------CCCCcEEEEeecCCCCccccccCCCCC
Q 011066 208 G-NYK-SLVFYLEACESGSIFEGLL----------------------------PEGLNIYATTASNAEESSWGTYCPGEI 257 (494)
Q Consensus 208 ~-~Yk-klv~~iEAC~SGSmf~~ll----------------------------p~~~nV~~iTASn~~EsSya~yc~~~~ 257 (494)
. .-+ + +|++|+|+||.+..... +...++++++|+.++|.||.. ++
T Consensus 114 ~~~~~~k-~~ilD~C~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~~~~~s~e~--~~-- 188 (248)
T PF00656_consen 114 SLPKKPK-LFILDCCRSGGFIDGLSSSSGESSKREERKLSSSIPPEDPNRSDVPSPSGFIVLSASRPGQTSYED--SP-- 188 (248)
T ss_dssp GGTTS-E-EEEEESESSSBTBCEEEEEESSSTSS-EECHCCCCCCSSCCSEEEETTTSEEEEESSSTTBCEEEE--CT--
T ss_pred hccCCcc-EEeeccccCCccCCccccccccccccccccccccccccccccccccCCCCcEEEEeccccceeecc--cC--
Confidence 2 222 4 99999999999866411 123489999999999999988 11
Q ss_pred CCCCCCccccchhhhhhhcccccccc------ccccccHHHHHHHHHhhcc
Q 011066 258 PGPPPEYSTCLGDLYSIAWMEDSDIH------NLRTETLHQQYELVKTRTA 302 (494)
Q Consensus 258 ~~~~~~~~tcLgD~fS~~wmedsd~~------~l~~eTl~~qf~~vk~~t~ 302 (494)
.. |-+|+.++++-...+ .-...+|.+.+..|++++.
T Consensus 189 ----~~-----~g~ft~~L~~~L~~~~~~~~~~~~~~~l~~~~~~v~~~~~ 230 (248)
T PF00656_consen 189 ----GS-----GGLFTYALLEALKGNAADDPNQSWDELLEELLTEVNQKVA 230 (248)
T ss_dssp ----TT-----EEHHHHHHHHHHHHHTTTSTTCCTTSBHHHHHHHHHHHHH
T ss_pred ----cc-----CHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHhHCC
Confidence 12 347888888755322 2235789999999998884
No 6
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=6.1e-06 Score=84.87 Aligned_cols=131 Identities=22% Similarity=0.331 Sum_probs=90.2
Q ss_pred CCCCCCeEEEEEeccCCCCcchhh-----HHHHHHHHHH-HhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCCcc
Q 011066 54 DDSVGTRWAVLLAGSNGFWNYRHQ-----ADICHAYQLL-RKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVY 127 (494)
Q Consensus 54 ~~~~~~~wAVlVagS~gw~NYRHq-----adv~~~Yq~L-~~~Gi~denIIlmm~DDia~n~~Np~pG~i~n~~~g~dvY 127 (494)
..-.+++-||||.-+ |.|=+++ .||-.|.+.| .+.||+.|+|++|.-+| ++|.
T Consensus 58 ~~~~gkrrAvLiGIN--Y~gTk~ELrGCINDv~~M~~~Lv~rfGFs~ddI~~LtDt~-----~s~~-------------- 116 (362)
T KOG1546|consen 58 PQMAGKRRAVLIGIN--YPGTKNELRGCINDVHRMRKLLVERFGFSEDDILMLTDTD-----ESPV-------------- 116 (362)
T ss_pred ccccccceEEEEeec--CCCcHHHHhhhHHHHHHHHHHHHHhhCCChhheEEEecCC-----Cccc--------------
Confidence 445588999999864 3333443 5899999976 67999999998887553 2221
Q ss_pred CCccccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCC-------CcccCC------C----CC
Q 011066 128 KGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGP-------GVLGMP------T----SR 190 (494)
Q Consensus 128 ~gv~iDY~g~~Vt~~nfl~VL~G~~~~~~~~s~kvl~S~~~D~VFIY~tgHGg~-------g~l~fp------d----~~ 190 (494)
.--|.+|+.+.|.- . |-...++|-+|+=|||||+. ..-+|. | +.
T Consensus 117 ---------~~PT~~Nir~Al~w---L-------V~~aq~gD~LvfHYSGHGtr~~~~~gDe~dG~DE~I~P~D~~t~G~ 177 (362)
T KOG1546|consen 117 ---------RIPTGKNIRRALRW---L-------VESAQPGDSLVFHYSGHGTRQPDTNGDEVDGYDETIVPCDHNTQGP 177 (362)
T ss_pred ---------ccCcHHHHHHHHHH---H-------HhcCCCCCEEEEEecCCCCcCCCCCCCCCCCCcceeeccccccccc
Confidence 12377899998882 1 22346789999999999982 122221 1 22
Q ss_pred CcCHHHHHHHHHHHHHcCCCceEEEEecccccccccc
Q 011066 191 YIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFE 227 (494)
Q Consensus 191 ~L~a~dL~~~L~~m~~~~~Ykklv~~iEAC~SGSmf~ 227 (494)
.|.++++....+.+- .=-+|-+++|+|+||++.+
T Consensus 178 iIdDe~~r~lV~plp---~G~~lt~I~DSCHSGgliD 211 (362)
T KOG1546|consen 178 IIDDEIFRILVRPLP---KGCKLTAISDSCHSGGLID 211 (362)
T ss_pred ccchHHHHHHHhccC---CCceEEEEeecccCCCccc
Confidence 456666666666652 3358999999999999988
No 7
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=96.76 E-value=0.026 Score=56.02 Aligned_cols=184 Identities=16% Similarity=0.219 Sum_probs=110.2
Q ss_pred CCeEEEEEeccCCCC-cchhh--HHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCCccCCccccC
Q 011066 58 GTRWAVLLAGSNGFW-NYRHQ--ADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDY 134 (494)
Q Consensus 58 ~~~wAVlVagS~gw~-NYRHq--adv~~~Yq~L~~~Gi~denIIlmm~DDia~n~~Np~pG~i~n~~~g~dvY~gv~iDY 134 (494)
....|+||+-+++-. .-|.- .|+-.+-.+|++.||. +.+ +
T Consensus 7 p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~---V~~--~-------------------------------- 49 (241)
T smart00115 7 PRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYE---VHV--K-------------------------------- 49 (241)
T ss_pred CCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCE---EEE--e--------------------------------
Confidence 477899998877521 11222 3899999999999992 222 2
Q ss_pred CCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCCcccCCCCCCcCHHHHHHHHHHHH-HcCCCceE
Q 011066 135 TGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKH-ASGNYKSL 213 (494)
Q Consensus 135 ~g~~Vt~~nfl~VL~G~~~~~~~~s~kvl~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~m~-~~~~Ykkl 213 (494)
.++|.+.+.++|..- . +..+-...|-+++||.+||+.|+|.-.|+..+.-++|.+.|..-. ..-.-|=-
T Consensus 50 --~dlt~~em~~~l~~~-~-------~~~~~~~~d~~v~~~~sHG~~~~l~~~D~~~v~l~~i~~~f~~~~c~~L~~kPK 119 (241)
T smart00115 50 --NNLTAEEMLEELKEF-A-------ERPEHSDSDSFVCVLLSHGEEGGIYGTDHSPLPLDEIFSLFNGDNCPSLAGKPK 119 (241)
T ss_pred --cCCCHHHHHHHHHHH-H-------hccccCCCCEEEEEEcCCCCCCeEEEecCCEEEHHHHHHhccccCChhhcCCCc
Confidence 256778888888631 1 111223478899999999999988777776677777777763210 11123446
Q ss_pred EEEeccccccccccc--------------------cCCCCCcEEEEeecCCCCccccccCCCCCCCCCCCccccchhhhh
Q 011066 214 VFYLEACESGSIFEG--------------------LLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYS 273 (494)
Q Consensus 214 v~~iEAC~SGSmf~~--------------------llp~~~nV~~iTASn~~EsSya~yc~~~~~~~~~~~~tcLgD~fS 273 (494)
+|+|+||...-+-.+ .+|...++++.=|+.++.-||-. +..+ -+|.
T Consensus 120 lffiqACRg~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~D~li~ysT~pG~va~r~----------~~~g----S~fi 185 (241)
T smart00115 120 LFFIQACRGDELDGGVPVEDDVDDPPTEFEDDAIYKIPVEADFLAAYSTTPGYVSWRN----------PTRG----SWFI 185 (241)
T ss_pred EEEEeCCCCCCCCCCeecccccccccccccccccccCCCcCcEEEEEeCCCCeEeecC----------CCCC----chHH
Confidence 889999965422111 12333456666666666555532 1112 2232
Q ss_pred hhccccccccccccccHHHHHHHHHhhccC
Q 011066 274 IAWMEDSDIHNLRTETLHQQYELVKTRTAS 303 (494)
Q Consensus 274 ~~wmedsd~~~l~~eTl~~qf~~vk~~t~~ 303 (494)
-...+-... .-..+.|.+.|..|.+++..
T Consensus 186 ~~L~~~l~~-~~~~~~l~~ilt~V~~~V~~ 214 (241)
T smart00115 186 QSLCQVLKE-YARSLDLLDILTEVNRKVAV 214 (241)
T ss_pred HHHHHHHHH-cCCCCCHHHHHHHHHHHHhh
Confidence 222221111 12457899999999998874
No 8
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=96.46 E-value=0.058 Score=53.48 Aligned_cols=183 Identities=16% Similarity=0.207 Sum_probs=112.6
Q ss_pred CCeEEEEEeccCCCC--cchh--hHHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCCccCCcccc
Q 011066 58 GTRWAVLLAGSNGFW--NYRH--QADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKD 133 (494)
Q Consensus 58 ~~~wAVlVagS~gw~--NYRH--qadv~~~Yq~L~~~Gi~denIIlmm~DDia~n~~Np~pG~i~n~~~g~dvY~gv~iD 133 (494)
....|+||.-+++-. .=|. ..|+-.+-.+|++.|| .+.+ +
T Consensus 8 ~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF---~V~~--~------------------------------- 51 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGY---EVEV--K------------------------------- 51 (243)
T ss_pred CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCC---EEEE--e-------------------------------
Confidence 578899998877643 1233 2689999999999999 2222 2
Q ss_pred CCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCCcccCCCCCCcCHHHHHHHHHHHH-HcCCCce
Q 011066 134 YTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKH-ASGNYKS 212 (494)
Q Consensus 134 Y~g~~Vt~~nfl~VL~G~~~~~~~~s~kvl~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~m~-~~~~Ykk 212 (494)
.++|.+.+...|..-.. + +....|-+++||.+||..+.|.-.|...+.-++|.+.|..-. .+-.-|=
T Consensus 52 ---~nlt~~~~~~~l~~f~~-------~--~~~~~d~~v~~~~sHG~~~~l~~~D~~~v~l~~i~~~f~~~~~~sl~~kP 119 (243)
T cd00032 52 ---NNLTAEEILEELKEFAS-------P--DHSDSDSFVCVILSHGEEGGIYGTDGDVVPIDEITSLFNGDNCPSLAGKP 119 (243)
T ss_pred ---CCCCHHHHHHHHHHHHh-------c--cCCCCCeeEEEECCCCCCCEEEEecCcEEEHHHHHHhhccCCCccccCCC
Confidence 25677888888763110 1 234567889999999999988776756677777777765211 1123455
Q ss_pred EEEEeccccccccccc-----------------------cCCCCCcEEEEeecCCCCccccccCCCCCCCCCCCccccch
Q 011066 213 LVFYLEACESGSIFEG-----------------------LLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLG 269 (494)
Q Consensus 213 lv~~iEAC~SGSmf~~-----------------------llp~~~nV~~iTASn~~EsSya~yc~~~~~~~~~~~~tcLg 269 (494)
-+|+|+||...-+-.+ ..|...++++.=|+.++.-||-.- .. |
T Consensus 120 Kl~~iqACRg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~lv~ysT~pG~~a~r~~----------~~----g 185 (243)
T cd00032 120 KLFFIQACRGDELDLGVEVDSGADEPPDVETEAEDDAVQTIPVEADFLVAYSTVPGYVSWRNT----------KK----G 185 (243)
T ss_pred cEEEEECCCCCcCCCceeccCccccccccccccccccccCCCCcccEEEEecCCCCeEeecCC----------CC----C
Confidence 6899999987543221 123334666666666666665431 11 1
Q ss_pred hhhhhhccccccccccccccHHHHHHHHHhhccC
Q 011066 270 DLYSIAWMEDSDIHNLRTETLHQQYELVKTRTAS 303 (494)
Q Consensus 270 D~fS~~wmedsd~~~l~~eTl~~qf~~vk~~t~~ 303 (494)
-+|.-...+-.. +.-..+.|.+.+..|.+++..
T Consensus 186 S~fi~~l~~~l~-~~~~~~~l~~il~~V~~~V~~ 218 (243)
T cd00032 186 SWFIQSLCQVLR-KYAHSLDLLDILTKVNRKVAE 218 (243)
T ss_pred CEeHHHHHHHHH-HhCCCCcHHHHHHHHHHHHhh
Confidence 122222222111 122346899999999998875
No 9
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain
Probab=90.57 E-value=0.26 Score=46.35 Aligned_cols=72 Identities=18% Similarity=0.355 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCC------cccCCCCC----CcCHHHHHHHHHHHHHc
Q 011066 138 DVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPG------VLGMPTSR----YIYADELIDVLKKKHAS 207 (494)
Q Consensus 138 ~Vt~~nfl~VL~G~~~~~~~~s~kvl~S~~~D~VFIY~tgHGg~g------~l~fpd~~----~L~a~dL~~~L~~m~~~ 207 (494)
+.|++.+.+.+..-. ++.+++.|.+.|.|||-|. +..|...- .++-.||.+.+..
T Consensus 71 dpt~e~~~~~~~~~R-----------~~a~~~RvLFHYnGhGvP~Pt~~GeIw~f~~~~tqyip~si~dL~~~lg~---- 135 (154)
T PF14538_consen 71 DPTVEDLKRLCQSLR-----------RNAKDERVLFHYNGHGVPRPTENGEIWVFNKNYTQYIPLSIYDLQSWLGS---- 135 (154)
T ss_pred CCCHHHHHHHHHHHH-----------hhCCCceEEEEECCCCCCCCCCCCeEEEEcCCCCcceEEEHHHHHHhcCC----
Confidence 678888888777321 2344689999999999984 44444321 3788888887665
Q ss_pred CCCceEEEEeccccccccccc
Q 011066 208 GNYKSLVFYLEACESGSIFEG 228 (494)
Q Consensus 208 ~~Ykklv~~iEAC~SGSmf~~ 228 (494)
-.+|+.|+..||++++.
T Consensus 136 ----Psi~V~DC~~AG~il~~ 152 (154)
T PF14538_consen 136 ----PSIYVFDCSNAGSILNA 152 (154)
T ss_pred ----CEEEEEECCcHHHHHHh
Confidence 78999999999998764
No 10
>PF12770 CHAT: CHAT domain
Probab=82.95 E-value=1.1 Score=44.16 Aligned_cols=67 Identities=24% Similarity=0.394 Sum_probs=46.1
Q ss_pred cCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCC-------cccCC-----CCCCcCHHHHHHH
Q 011066 133 DYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPG-------VLGMP-----TSRYIYADELIDV 200 (494)
Q Consensus 133 DY~g~~Vt~~nfl~VL~G~~~~~~~~s~kvl~S~~~D~VFIY~tgHGg~g-------~l~fp-----d~~~L~a~dL~~~ 200 (494)
-..+.+.|.++|+..|... + -=.|+|++||... .|.+. ++..|++.||..
T Consensus 123 ~~~~~~at~~~l~~~l~~~--------------~---~~ilH~a~Hg~~~~~~~~~~~l~l~~~~~~~~~~l~~~~l~~- 184 (287)
T PF12770_consen 123 VLVGPEATKDALLEALERR--------------G---PDILHFAGHGTFDPDPPDQSGLVLSDESGQEDGLLSAEELAQ- 184 (287)
T ss_pred EeeccCCCHHHHHhhhccC--------------C---CCEEEEEcccccCCCCCCCCEEEEeccCCCCCcccCHHHHHh-
Confidence 3566778888888888311 1 1268999999876 67775 345699999988
Q ss_pred HHHHHHcCCCceEEEEecccccc
Q 011066 201 LKKKHASGNYKSLVFYLEACESG 223 (494)
Q Consensus 201 L~~m~~~~~Ykklv~~iEAC~SG 223 (494)
++- .+ -+ ++++-||+||
T Consensus 185 l~l---~~--~~-lVvLsaC~s~ 201 (287)
T PF12770_consen 185 LDL---RG--PR-LVVLSACESA 201 (287)
T ss_pred hcC---CC--CC-EEEecCcCCc
Confidence 221 11 34 5689999999
No 11
>PF01364 Peptidase_C25: Peptidase family C25 This family belongs to family C25 of the peptidase classification.; InterPro: IPR001769 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C25 (gingipain, clan CD). The protein fold of the peptidase domain for members of this entry resembles that of caspase 1, the type example for clan CD. This is a protein family found only in the bacteria. Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=65.85 E-value=7.8 Score=40.72 Aligned_cols=103 Identities=21% Similarity=0.231 Sum_probs=47.2
Q ss_pred eEEEEeecCCCCCcccCCCCCCcCHHHHHHHHHHHHHcCCCceEEEEecccccccc-ccc---------cCCCCCcEEEE
Q 011066 170 HIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSI-FEG---------LLPEGLNIYAT 239 (494)
Q Consensus 170 ~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~m~~~~~Ykklv~~iEAC~SGSm-f~~---------llp~~~nV~~i 239 (494)
..||.|.|||++..+ ..+.|+.+|+.. +. +..|--+++.-||+.|.+ ... +.|++--|-.+
T Consensus 239 ~~~v~y~GHG~~~~w---~~~~~~~~d~~~----l~--N~~~~p~~~s~~C~~g~fd~~~~~sl~E~~v~~~~gGAia~i 309 (378)
T PF01364_consen 239 AGFVNYFGHGSPTSW---ADEDFTSSDISN----LN--NKNKLPVVISAACYTGNFDDPDNPSLGEALVLNPNGGAIAFI 309 (378)
T ss_dssp -SEEEEES-B-SSBB---TTT--BTTTGGG---------TT---EEEEESSSTT-TTSSS---HHHHHHTTEE-S-SEEE
T ss_pred CeEEEEecCCchhhc---ccCcccHhHHHH----hc--CCCCceEEEEeECCCcCCCCCCCCcHHHHheECCCCcEEEEE
Confidence 368899999998755 222244444332 21 223556788889999988 332 12332234445
Q ss_pred eecCCCCccccccCCCCCCCCCCCccccchhhhhhhccccccccccccccHHHHHHHHHhhcc
Q 011066 240 TASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTA 302 (494)
Q Consensus 240 TASn~~EsSya~yc~~~~~~~~~~~~tcLgD~fS~~wmedsd~~~l~~eTl~~qf~~vk~~t~ 302 (494)
+++. .+|..+ ++.|+..+.+...... ..+|.+.+...|....
T Consensus 310 g~s~---~~~~~~----------------~~~~~~~~~~~l~~~~--~~~lG~a~~~a~~~~~ 351 (378)
T PF01364_consen 310 GSSR---VSYASP----------------NDRLNRGFYEALFNSN--MDTLGEALRQAKNYYL 351 (378)
T ss_dssp EESS-----SSHH----------------HHHHHHHHTT-STT------BHHHHHHHHHHHHH
T ss_pred ecce---eEecch----------------HHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHH
Confidence 5544 444331 3445555554332221 1278888887777554
No 12
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=64.41 E-value=6 Score=39.28 Aligned_cols=23 Identities=35% Similarity=0.746 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEe
Q 011066 79 DICHAYQLLRKGGLKDENIIVFM 101 (494)
Q Consensus 79 dv~~~Yq~L~~~Gi~denIIlmm 101 (494)
-||.|-..||.+|+||++|||..
T Consensus 204 TV~~Av~VL~EhgVp~s~IiL~s 226 (267)
T KOG1017|consen 204 TVCKAVEVLKEHGVPDSNIILVS 226 (267)
T ss_pred cHHHHHHHHHHcCCCcccEEEEE
Confidence 69999999999999999999975
No 13
>COG4249 Uncharacterized protein containing caspase domain [General function prediction only]
Probab=54.74 E-value=9.4 Score=41.06 Aligned_cols=61 Identities=28% Similarity=0.464 Sum_probs=38.3
Q ss_pred CCCCeEEEEeecCCCCC-------cccCCCC---------CCcCHHHHHHHHHHHHHcCCCceEEEEecccccccccccc
Q 011066 166 GPNDHIFIFYSDHGGPG-------VLGMPTS---------RYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGL 229 (494)
Q Consensus 166 ~~~D~VFIY~tgHGg~g-------~l~fpd~---------~~L~a~dL~~~L~~m~~~~~Ykklv~~iEAC~SGSmf~~l 229 (494)
.+.|+++.||+|||... ++.|-.. .-+... .....+|.. .-++-+.++++|++|.+|...
T Consensus 131 ~~~d~~~~~fsG~g~~~~~d~~~~lia~~t~p~~~a~~~~~~~s~~---~~~~~~~~~-~~~~ql~~~d~~~~~~~~~~~ 206 (380)
T COG4249 131 PPADTILFFFSGHGATPGADGRAYLIAFDTRPGAVAYDGEGGISPY---SVAQALHLS-EPGNQLVDLDACVRGDVFKAT 206 (380)
T ss_pred chhhhhhheeeccccccCCCCceeEEeecCChhhhcccCCCcccHH---HHHHHHHhc-cCCceeehhhhhcchhhhccc
Confidence 34799999999999862 2333211 112222 333333333 455667899999999999875
Q ss_pred C
Q 011066 230 L 230 (494)
Q Consensus 230 l 230 (494)
.
T Consensus 207 ~ 207 (380)
T COG4249 207 A 207 (380)
T ss_pred c
Confidence 4
No 14
>PF03568 Peptidase_C50: Peptidase family C50; InterPro: IPR005314 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C50 (separase family, clan CD). The active site residues for members of this family and family C14 occur in the same order in the sequence: H,C. The separases are caspase-like proteases, which plays a central role in the chromosome segregation. In yeast they cleave the rad21 subunit of the cohesin complex at the onset of anaphase. During most of the cell cycle, separase is inactivated by the securin/cut2 protein, which probably covers its active site. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0005634 nucleus
Probab=40.75 E-value=25 Score=37.55 Aligned_cols=43 Identities=28% Similarity=0.494 Sum_probs=27.3
Q ss_pred CCeEEEEeecCCCCCcccCCCCCCcCHHHHHHHHHHHHHcCCCceEEEEecccccccccc
Q 011066 168 NDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFE 227 (494)
Q Consensus 168 ~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~m~~~~~Ykklv~~iEAC~SGSmf~ 227 (494)
+.++|| |.||||=. .|+...++.+ + -+.-+.++=+|-||.+-.
T Consensus 308 ~~dlf~-Y~GHG~G~-------qy~~~~~i~~----~-----~~~~~~lL~GCsS~~l~~ 350 (383)
T PF03568_consen 308 SSDLFL-YCGHGSGE-------QYISGSTIQR----L-----DCCAVSLLMGCSSGRLKE 350 (383)
T ss_pred hCCeEE-EecCCcHH-------HhCCHhhhcc----c-----cccCceEEecCCcccccc
Confidence 455888 56999832 3455544432 2 234577788999988765
No 15
>PF11181 YflT: Heat induced stress protein YflT
Probab=38.34 E-value=40 Score=29.16 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHHHHhCCCCCCCEEEEecc
Q 011066 75 RHQADICHAYQLLRKGGLKDENIIVFMYD 103 (494)
Q Consensus 75 RHqadv~~~Yq~L~~~Gi~denIIlmm~D 103 (494)
.=+..+.++-+-|++.|+..++|.|+..|
T Consensus 7 ~~~~E~~~~I~~L~~~Gy~~ddI~Vva~d 35 (103)
T PF11181_consen 7 DNEEEALSAIEELKAQGYSEDDIYVVAKD 35 (103)
T ss_pred CCHHHHHHHHHHHHHcCCCcccEEEEEcC
Confidence 34678899999999999999999999865
No 16
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=38.01 E-value=28 Score=36.05 Aligned_cols=102 Identities=23% Similarity=0.420 Sum_probs=65.7
Q ss_pred CCCeEeeCCCCC--------CccCCccccCCCCCCC----HHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCC
Q 011066 113 RPGVIINHPHGD--------DVYKGVPKDYTGEDVT----VENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGG 180 (494)
Q Consensus 113 ~pG~i~n~~~g~--------dvY~gv~iDY~g~~Vt----~~nfl~VL~G~~~~~~~~s~kvl~S~~~D~VFIY~tgHGg 180 (494)
.||+|.+ -||. ++|+-..++-.|..+. |+.+...|.-- .|+ | +-+|||-|
T Consensus 103 ~PGrVLH-iDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~--------------~PD--I-lViTGHD~ 164 (283)
T TIGR02855 103 MPGRVLH-IDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEV--------------RPD--I-LVITGHDA 164 (283)
T ss_pred CCCcEEe-ecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHh--------------CCC--E-EEEeCchh
Confidence 4999887 3442 4666444454454433 44555555411 222 3 44799965
Q ss_pred CCccc----CCC-CCCcCHHHHHHHHHHHHHcC-CCceEEEEeccccccccccccCCCCCcE
Q 011066 181 PGVLG----MPT-SRYIYADELIDVLKKKHASG-NYKSLVFYLEACESGSIFEGLLPEGLNI 236 (494)
Q Consensus 181 ~g~l~----fpd-~~~L~a~dL~~~L~~m~~~~-~Ykklv~~iEAC~SGSmf~~llp~~~nV 236 (494)
+++ |.| ..|-.+..+.++.+...+-. .+-+|||+.-|||| -||.+|..+-|-
T Consensus 165 --~~K~~~d~~dl~~YrnSkyFVeaVk~aR~y~~~~D~LVIFAGACQS--~yEall~AGANF 222 (283)
T TIGR02855 165 --YSKNKGNYMDLNAYRHSKYFVETVREARKYVPSLDQLVIFAGACQS--HFESLIRAGANF 222 (283)
T ss_pred --hhcCCCChhhhhhhhhhHHHHHHHHHHHhcCCCcccEEEEcchhHH--HHHHHHHcCccc
Confidence 443 222 34778899999999886644 67899999999997 788887666563
No 17
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=32.60 E-value=40 Score=34.20 Aligned_cols=36 Identities=22% Similarity=0.365 Sum_probs=25.7
Q ss_pred EEEEEeccCCCCcchhhHHHHHHHHHHHhCCCCCCCEEE
Q 011066 61 WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIV 99 (494)
Q Consensus 61 wAVlVagS~gw~NYRHqadv~~~Yq~L~~~Gi~denIIl 99 (494)
=.+||+|-++=..| ..+-.|.+.|.+.|||++.|++
T Consensus 83 ~~ilvSGg~~~~~~---~Ea~~M~~yLi~~GVp~e~Ii~ 118 (239)
T PRK10834 83 NYLLLSGDNALQSY---NEPMTMRKDLIAAGVDPSDIVL 118 (239)
T ss_pred CEEEEeCCCCCCCC---CHHHHHHHHHHHcCCCHHHEEe
Confidence 34788887642223 3455688889999999999887
No 18
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=32.48 E-value=36 Score=35.40 Aligned_cols=102 Identities=29% Similarity=0.540 Sum_probs=64.7
Q ss_pred CCCeEeeCCCCC--------CccCCccccCCCCCCC----HHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCC
Q 011066 113 RPGVIINHPHGD--------DVYKGVPKDYTGEDVT----VENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGG 180 (494)
Q Consensus 113 ~pG~i~n~~~g~--------dvY~gv~iDY~g~~Vt----~~nfl~VL~G~~~~~~~~s~kvl~S~~~D~VFIY~tgHGg 180 (494)
.||+|.+ -||. ++|+-..|+=.|..+. |+.+...|.-- .|+ | +-+|||=|
T Consensus 104 ~PGkVLH-lDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~--------------~PD--I-lViTGHD~ 165 (287)
T PF05582_consen 104 RPGKVLH-LDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEY--------------RPD--I-LVITGHDG 165 (287)
T ss_pred CCCeEEE-ecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHc--------------CCC--E-EEEeCchh
Confidence 7999887 3442 4666555555555544 33444444411 222 3 44799966
Q ss_pred CCcccC----CC-CCCcCHHHHHHHHHHHHH-cCCCceEEEEeccccccccccccCCCCCcE
Q 011066 181 PGVLGM----PT-SRYIYADELIDVLKKKHA-SGNYKSLVFYLEACESGSIFEGLLPEGLNI 236 (494)
Q Consensus 181 ~g~l~f----pd-~~~L~a~dL~~~L~~m~~-~~~Ykklv~~iEAC~SGSmf~~llp~~~nV 236 (494)
+++= .+ ..|=.+..+.++.+...+ ...+-+|||+.-|||| -||.||..+-|-
T Consensus 166 --~~K~~~d~~dl~~YrnSkyFVeaV~~aR~~ep~~D~LVIfAGACQS--~fEall~AGANF 223 (287)
T PF05582_consen 166 --YLKNKKDYSDLNNYRNSKYFVEAVKEARKYEPNLDDLVIFAGACQS--HFEALLEAGANF 223 (287)
T ss_pred --hhcCCCChhhhhhhhccHHHHHHHHHHHhcCCCcccEEEEcchhHH--HHHHHHHcCccc
Confidence 3332 22 236678889999988765 4467799999999997 788888766663
No 19
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=31.65 E-value=71 Score=24.75 Aligned_cols=26 Identities=15% Similarity=0.409 Sum_probs=21.4
Q ss_pred hhHHHHHHHHhccCCCHHHHHHHHHh
Q 011066 450 MKHMRSLANICNTGIGKEKMAEASAQ 475 (494)
Q Consensus 450 ~k~~r~faNlC~~G~~~~~m~~a~~~ 475 (494)
...+.....||+.|+.++..++.+..
T Consensus 21 ~etL~ici~L~e~GVnPeaLA~vI~e 46 (48)
T PF12554_consen 21 RETLSICIELCENGVNPEALAAVIKE 46 (48)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 45677889999999999988887754
No 20
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=26.54 E-value=56 Score=29.29 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=27.0
Q ss_pred eEEEEEeccCCCCcchhhHHHHHHHHHHHhCCCCCCCEEE
Q 011066 60 RWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIV 99 (494)
Q Consensus 60 ~wAVlVagS~gw~NYRHqadv~~~Yq~L~~~Gi~denIIl 99 (494)
.--||++|..+...... .+-.+.+.|.+.|+|++.|++
T Consensus 35 ~~~ii~sGg~~~~~~~~--ea~~m~~~l~~~gv~~~~I~~ 72 (150)
T cd06259 35 APKLIVSGGQGPGEGYS--EAEAMARYLIELGVPAEAILL 72 (150)
T ss_pred CCEEEEcCCCCCCCCCC--HHHHHHHHHHHcCCCHHHeee
Confidence 44577777766553333 445566889999999998887
No 21
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=26.12 E-value=63 Score=29.13 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=20.3
Q ss_pred EEEeccCCCCcchhhHHHHHHHHHHHhCCCCCCCEEE
Q 011066 63 VLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIV 99 (494)
Q Consensus 63 VlVagS~gw~NYRHqadv~~~Yq~L~~~Gi~denIIl 99 (494)
||++|..+... ....+-.+-++|.+.|+|+++|++
T Consensus 41 il~SGg~~~~~--~~~ea~~~~~~l~~~gvp~~~I~~ 75 (155)
T PF02698_consen 41 ILFSGGYGHGD--GRSEAEAMRDYLIELGVPEERIIL 75 (155)
T ss_dssp EEEE--SSTTH--TS-HHHHHHHHHHHT---GGGEEE
T ss_pred EEECCCCCCCC--CCCHHHHHHHHHHhcccchheeEc
Confidence 77777666554 334555566778888999999988
No 22
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=23.65 E-value=73 Score=32.76 Aligned_cols=42 Identities=36% Similarity=0.584 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHh-CCCCCCCEEEEecc-------ccccCCCCCCCCeEeeCC
Q 011066 77 QADICHAYQLLRK-GGLKDENIIVFMYD-------DIAFNEENPRPGVIINHP 121 (494)
Q Consensus 77 qadv~~~Yq~L~~-~Gi~denIIlmm~D-------Dia~n~~Np~pG~i~n~~ 121 (494)
.+|+-++|+.||+ .| ++|+|||+-.- |.| .|+|..|.|.+.|
T Consensus 112 y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~La--sr~~~~alVL~SP 161 (258)
T KOG1552|consen 112 YADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLA--SRYPLAAVVLHSP 161 (258)
T ss_pred hhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHh--hcCCcceEEEecc
Confidence 3899999999876 78 99999998532 222 2455566666655
No 23
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=21.36 E-value=92 Score=30.92 Aligned_cols=35 Identities=23% Similarity=0.479 Sum_probs=26.4
Q ss_pred EEEEeecCCC---------CCcccCCCCCCcCHHHHHHHHHHHHH
Q 011066 171 IFIFYSDHGG---------PGVLGMPTSRYIYADELIDVLKKKHA 206 (494)
Q Consensus 171 VFIY~tgHGg---------~g~l~fpd~~~L~a~dL~~~L~~m~~ 206 (494)
=-||+||||- .|..-|=..+ +..++|.++++...+
T Consensus 78 PVIfiTGhgDIpmaV~AmK~GAvDFLeKP-~~~q~Lldav~~Al~ 121 (202)
T COG4566 78 PVIFLTGHGDIPMAVQAMKAGAVDFLEKP-FSEQDLLDAVERALA 121 (202)
T ss_pred CEEEEeCCCChHHHHHHHHcchhhHHhCC-CchHHHHHHHHHHHH
Confidence 3588999997 3555555554 889999999998754
No 24
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=21.34 E-value=49 Score=31.54 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=27.1
Q ss_pred CeEEEEEeccCCCCcchhhHHHHHHHHHHHhCCCCCCCEEEE
Q 011066 59 TRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVF 100 (494)
Q Consensus 59 ~~wAVlVagS~gw~NYRHqadv~~~Yq~L~~~Gi~denIIlm 100 (494)
..-.|.|+|+.++-+ -.+.+.|++.|+|++||.+|
T Consensus 200 ~~~~~~icGp~~~~~-------~~~~~~l~~~G~~~~~i~~~ 234 (234)
T cd06183 200 EDTLVLVCGPPPMIE-------GAVKGLLKELGYKKDNVFKF 234 (234)
T ss_pred CCeEEEEECCHHHHH-------HHHHHHHHHcCCCHHHEEeC
Confidence 345788999987642 25677889999999999875
No 25
>KOG3332 consensus N-acetylglucosaminyl phosphatidylinositol de-N-acetylase [Cell wall/membrane/envelope biogenesis]
Probab=20.72 E-value=2e+02 Score=29.32 Aligned_cols=64 Identities=20% Similarity=0.085 Sum_probs=40.5
Q ss_pred ccCccccccccCCCCCCCCCCCCCCCCCeEEEEEeccCCCCcchhhHHHH--HHHHHHHhCCCCCCCEEEEeccc
Q 011066 32 KLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADIC--HAYQLLRKGGLKDENIIVFMYDD 104 (494)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wAVlVagS~gw~NYRHqadv~--~~Yq~L~~~Gi~denIIlmm~DD 104 (494)
-=|.+++.||.|.-.. -..+..|.=+++=|+| |+-++.-+= -.-+.--..|+|.+|++++-+.+
T Consensus 45 AhpdDE~mFFsPtI~~-------L~~~~~~v~iLClSnG--N~dg~G~iR~kEL~ra~~~lgi~~s~v~~l~~~~ 110 (247)
T KOG3332|consen 45 AHPDDESMFFSPTILY-------LTSGACNVHILCLSNG--NADGLGKIREKELHRACAVLGIPLSNVVVLDTPF 110 (247)
T ss_pred eccCccccchhhHHHH-------HhcCCccEEEEEecCC--CccccchHHHHHHHHHHHHHCCchhheEEecCCc
Confidence 3355667777752111 1125668888899999 887776542 11222334799999999987654
Done!