BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011072
(494 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8K0V4|CNOT3_MOUSE CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3
PE=1 SV=1
Length = 751
Score = 176 bits (445), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 100/153 (65%), Gaps = 13/153 (8%)
Query: 338 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 397
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 608 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 665
Query: 398 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 457
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 666 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 722
Query: 458 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 490
+YFD+ W QR K FTFEY YLED
Sbjct: 723 IYFDY--------EKWGQRKKEGFTFEYRYLED 747
>sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3
PE=1 SV=1
Length = 753
Score = 175 bits (444), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 100/153 (65%), Gaps = 13/153 (8%)
Query: 338 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 397
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 610 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 667
Query: 398 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 457
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 668 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 724
Query: 458 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 490
+YFD+ W QR K FTFEY YLED
Sbjct: 725 IYFDY--------EKWGQRKKEGFTFEYRYLED 749
>sp|O13870|NOT3_SCHPO General negative regulator of transcription subunit 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=not3 PE=1 SV=2
Length = 640
Score = 144 bits (364), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 99/173 (57%), Gaps = 12/173 (6%)
Query: 319 LGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYP 378
L + ++L+ + G D+ + L + +P D+ + + YIP+ P P YP
Sbjct: 475 LKDLVNALNTSKEQHKGAIDKEKLTEALNISCVYVPDATDAAKPQYYIPKDPYPVPHYYP 534
Query: 379 QVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTW 438
Q P+ + E + DTLF+ FYY+ TYQQY+A +ELKKQSWR+H+KY TW
Sbjct: 535 QQPLPLFDSSEMTELV-----DPDTLFYMFYYRPGTYQQYIAGQELKKQSWRFHKKYTTW 589
Query: 439 FQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE 491
FQRHEEPK+ DEFE G+Y YFDF + W QR K +F F Y YLED+
Sbjct: 590 FQRHEEPKMITDEFESGSYRYFDF-------EGDWVQRKKADFRFTYQYLEDD 635
>sp|Q52JK6|VIP2_NICBE Probable NOT transcription complex subunit VIP2 (Fragment)
OS=Nicotiana benthamiana GN=VIP2 PE=1 SV=1
Length = 603
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 87/212 (41%), Gaps = 25/212 (11%)
Query: 285 AQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQ 344
Q RD L Q + P G LG++ +SD +L G +++ G+ N+
Sbjct: 412 GQPFRDQSLKSMQSQVAPDPFGMLGLLSVIRMSDPDLTSLAL-GIDLTTLGL-----NLN 465
Query: 345 MLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTL 404
E+ + P E A+ P T P + P N A++ + LD TL
Sbjct: 466 SAENLYKTFGSPWSDEPAKG----DPEFTVPQCYYAKQPPPLNQAYFSKFQLD-----TL 516
Query: 405 FFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQR--HEEPKVANDEFEQGTYVYFDF 462
F+ FY Q AA EL + W YHR++ WF R + EP V + +E+G+Y+ FD
Sbjct: 517 FYIFYSMPKDEAQLYAANELYNRGWFYHREHRLWFMRVANMEPLVKTNAYERGSYICFD- 575
Query: 463 HIANDDLQHGWCQRIKTEFTFEYNYLEDELIV 494
+ W K F LE ++
Sbjct: 576 -------PNTWETIHKDNFVLHCEMLEKRPVL 600
>sp|Q9NZN8|CNOT2_HUMAN CCR4-NOT transcription complex subunit 2 OS=Homo sapiens GN=CNOT2
PE=1 SV=1
Length = 540
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 19/132 (14%)
Query: 370 PAVTPPSYPQ-----VQAPIVSNPAFWERLS---LDSYGTDTLFFAFYYQQNTYQQYLAA 421
P + P PQ V + ++N ++L+ L YG D LF+ +Y Q LAA
Sbjct: 402 PWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAA 461
Query: 422 KELKKQSWRYHRKYNTWFQRHE--EPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKT 479
EL + WRYH++ W R EP + + +E+GTY +FD W +++
Sbjct: 462 VELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDC--------LNW-RKVAK 512
Query: 480 EFTFEYNYLEDE 491
EF EY+ LE+
Sbjct: 513 EFHLEYDKLEER 524
>sp|Q8C5L3|CNOT2_MOUSE CCR4-NOT transcription complex subunit 2 OS=Mus musculus GN=Cnot2
PE=2 SV=2
Length = 540
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 19/132 (14%)
Query: 370 PAVTPPSYPQ-----VQAPIVSNPAFWERLS---LDSYGTDTLFFAFYYQQNTYQQYLAA 421
P + P PQ V + ++N ++L+ L YG D LF+ +Y Q LAA
Sbjct: 402 PWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAA 461
Query: 422 KELKKQSWRYHRKYNTWFQRHE--EPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKT 479
EL + WRYH++ W R EP + + +E+GTY +FD W +++
Sbjct: 462 VELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDC--------LNW-RKVAK 512
Query: 480 EFTFEYNYLEDE 491
EF EY+ LE+
Sbjct: 513 EFHLEYDKLEER 524
>sp|Q9FPW4|VIP2_ARATH Probable NOT transcription complex subunit VIP2 OS=Arabidopsis
thaliana GN=VIP2 PE=1 SV=2
Length = 614
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%)
Query: 388 PAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKV 447
P R S + + LF+ FY Q AA EL ++ W YH++ WF R EP V
Sbjct: 513 PPPLTRASFKRFSYELLFYTFYSMPKDEAQLYAADELYERGWFYHKELRVWFFRVGEPLV 572
Query: 448 ANDEFEQGTYVYFD 461
+E+GTY Y D
Sbjct: 573 RAATYERGTYEYLD 586
>sp|P06100|NOT2_YEAST General negative regulator of transcription subunit 2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=CDC36 PE=1 SV=1
Length = 191
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 76/170 (44%), Gaps = 44/170 (25%)
Query: 346 LESAFYKLPQPKDS--------------ERARSYI-PRHPAVTPPSY---PQVQAPIVSN 387
L S Y L P+DS E +RS + PR TP S+ P V V+
Sbjct: 34 LSSMLYSLGIPRDSQDHRVLDTFQSPWAETSRSEVEPRF--FTPESFTNIPGVLQSTVTP 91
Query: 388 PAF------WERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQR 441
P F +R++L + +TLFF FY T Q L EL+K++WRYH+ W +
Sbjct: 92 PCFNSIQNDQQRVAL--FQDETLFFLFYKHPGTVIQELTYLELRKRNWRYHKTLKAWLTK 149
Query: 442 H--EEPKVANDEF-EQGTYVYFDFHIANDDLQHGW--CQRIKTEFTFEYN 486
EP V+ D E+G+YV+FD W CQR +F YN
Sbjct: 150 DPMMEPIVSADGLSERGSYVFFD--------PQRWEKCQR---DFLLFYN 188
>sp|P87240|NOT2_SCHPO General negative regulator of transcription subunit 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=not2 PE=1 SV=2
Length = 306
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 20/120 (16%)
Query: 374 PPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHR 433
P Y V P + F + +TLF+ FY Q AA+EL ++WR+H+
Sbjct: 196 PACYKNVNPPPAISKIF-------QFSDETLFYIFYTMPRDVMQEAAAQELTNRNWRFHK 248
Query: 434 KYNTWFQRHE--EPKVANDEFEQGTYVYFD-FHIANDDLQHGWCQRIKTEFTFEYNYLED 490
+ W +P +FE+G Y++FD H W +RIK +F Y LED
Sbjct: 249 ELRVWLTPVPGMKPLQRTPQFERGYYMFFDPIH---------W-KRIKKDFLLMYAALED 298
>sp|Q94547|RGA_DROME Regulator of gene activity OS=Drosophila melanogaster GN=Rga PE=2
SV=2
Length = 585
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 16/96 (16%)
Query: 373 TPPSYPQVQAPIVSNPAFWERLS---LDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSW 429
PP Y + N A ++L+ L D LFF FY Q +AA EL + W
Sbjct: 466 VPPEY-------LINFAIRDKLTAPVLKKLQEDLLFFLFYTNIGDMMQLMAAAELHSREW 518
Query: 430 RYHRKYNTWFQRHEEPKV----ANDEFEQGTYVYFD 461
RYH + W R P + N E+GT+ YFD
Sbjct: 519 RYHVEEKIWITRI--PGIDQYEKNGTKERGTFYYFD 552
>sp|Q12514|NOT5_YEAST General negative regulator of transcription subunit 5
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NOT5 PE=1 SV=1
Length = 560
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 6/68 (8%)
Query: 399 YGTDTLFFAFYYQQNTYQQYLAAKEL-KKQSWRYHRKYNTWFQRHEE---PKVANDEFEQ 454
+ DTLFF FY+ Q +Y+Q+LAA+EL K ++W +++ W+ + E P + E E
Sbjct: 472 FDLDTLFFIFYHYQGSYEQFLAARELFKNRNWLFNKVDRCWYYKEIEKLPPGMGKSEEE- 530
Query: 455 GTYVYFDF 462
++ YFD+
Sbjct: 531 -SWRYFDY 537
>sp|P06102|NOT3_YEAST General negative regulator of transcription subunit 3
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NOT3 PE=1 SV=2
Length = 836
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 403 TLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDF 462
+LF+ +Y+ ++ +A K L ++ W+ + WF R E K N+ E G Y F
Sbjct: 707 SLFYNYYFAITPLEREIAYKILNERDWKVSKDGTMWFLRQGEVKFFNEICEVGDYKIFKL 766
Query: 463 HIANDDLQHGWCQRIKTEFTFEYNYLE 489
DD W K F +Y++L+
Sbjct: 767 ----DD----WTVIDKINFRLDYSFLQ 785
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 191,549,550
Number of Sequences: 539616
Number of extensions: 8400733
Number of successful extensions: 21909
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 219
Number of HSP's that attempted gapping in prelim test: 21346
Number of HSP's gapped (non-prelim): 640
length of query: 494
length of database: 191,569,459
effective HSP length: 122
effective length of query: 372
effective length of database: 125,736,307
effective search space: 46773906204
effective search space used: 46773906204
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)