Query 011072
Match_columns 494
No_of_seqs 192 out of 391
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 07:48:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011072.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011072hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2150 CCR4-NOT transcription 100.0 2.7E-40 6E-45 348.2 17.5 144 335-491 431-574 (575)
2 PF04153 NOT2_3_5: NOT2 / NOT3 100.0 1.2E-39 2.5E-44 290.8 10.7 128 349-489 1-134 (134)
3 COG5665 NOT5 CCR4-NOT transcri 100.0 4.3E-35 9.4E-40 298.5 6.8 129 349-491 418-546 (548)
4 COG5601 CDC36 General negative 100.0 4.4E-34 9.4E-39 260.9 1.8 160 307-489 5-172 (172)
5 KOG2151 Predicted transcriptio 99.5 2.1E-15 4.6E-20 151.8 3.9 125 281-429 179-312 (312)
6 KOG2151 Predicted transcriptio 99.1 1.9E-11 4.2E-16 123.5 2.3 133 321-490 37-175 (312)
7 PF05523 FdtA: WxcM-like, C-te 31.4 37 0.00081 30.7 2.4 33 399-442 29-61 (131)
8 PRK02220 4-oxalocrotonate taut 17.8 84 0.0018 24.0 1.7 27 121-154 10-36 (61)
9 PF06713 bPH_4: Bacterial PH d 15.6 86 0.0019 25.7 1.3 18 124-141 56-73 (74)
10 KOG1885 Lysyl-tRNA synthetase 14.2 1.4E+02 0.0031 33.6 2.9 19 128-147 487-505 (560)
No 1
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=100.00 E-value=2.7e-40 Score=348.24 Aligned_cols=144 Identities=53% Similarity=0.978 Sum_probs=140.1
Q ss_pred cccccchhhhhHHHHHhcCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhhhccCCCCCceeEEEeecCCCc
Q 011072 335 GMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNT 414 (494)
Q Consensus 335 ~~~d~lLnLnslE~sy~tfPsPwDsEppR~Y~PrnP~~tP~cYpq~ppP~ldnp~lfeKiKm~kfs~ETLFYIFY~~Pgd 414 (494)
++++++..+.++|.++..++.|.|+|+|+.|.|++|+.+|.+|++++++.+++..+|+| |+.|||||||||++|+
T Consensus 431 ~~~e~i~~~~~~e~a~~~~~~psdsE~pq~y~pk~p~~tp~~~~q~~~~~~ds~~~~~r-----l~~dTLFfiFY~~qgt 505 (575)
T KOG2150|consen 431 ITNEQIRFLYALEAACKLVPIPSDSEKPQGYLPKTPLPTPSYFPQTPPSLTDSTEITER-----LDPDTLFFIFYYQQGT 505 (575)
T ss_pred ccccccchHHHHHhhhccCCCCchhhcccCCCCCCCCCCCccCCCCCCcccchhhHHhh-----ccccceeeEEeeecch
Confidence 45899999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHhhcCceeecccceeeecccCCccCCCccceeeEEEeccccCccccccccceeeccCeEEechhhhhh
Q 011072 415 YQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE 491 (494)
Q Consensus 415 ~~QllAA~EL~~RgWRYHKe~k~Wf~R~~ePk~~t~~yErGsY~yFD~~~~~d~~~~~W~~r~K~nFtfeY~~LE~~ 491 (494)
++|++||+||++|+||||++|.+||+|+.|||.+|+.||+|+|+|||++ .||+|+|.+|+|+|.+||+.
T Consensus 506 ~eQylAaKeLkk~sWrfhkky~tWFqR~~EpK~itd~~E~G~y~yFD~~--------~W~qrkK~dFtfeY~yLE~~ 574 (575)
T KOG2150|consen 506 YEQYLAAKELKKRSWRFHKKYTTWFQRHEEPKNITDIYEQGDYRYFDYK--------DWSQRKKIDFTFEYQYLEDS 574 (575)
T ss_pred HHHHHHHHHHhhcceeEeecceeEeeeccCccchhhhhhcCceEEEehh--------HhhhhhccceeeehhhccCC
Confidence 9999999999999999999999999999999999999999999999995 89999999999999999985
No 2
>PF04153 NOT2_3_5: NOT2 / NOT3 / NOT5 family; InterPro: IPR007282 NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes. This family includes NOT2, NOT3 and NOT5.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=1.2e-39 Score=290.81 Aligned_cols=128 Identities=45% Similarity=0.910 Sum_probs=114.9
Q ss_pred HHhcCCCCCCCCcC----CCCC-CCCCCCCCCCCCCCCCCC-CCChhhhhhhccCCCCCceeEEEeecCCCcHHHHHHHH
Q 011072 349 AFYKLPQPKDSERA----RSYI-PRHPAVTPPSYPQVQAPI-VSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAK 422 (494)
Q Consensus 349 sy~tfPsPwDsEpp----R~Y~-PrnP~~tP~cYpq~ppP~-ldnp~lfeKiKm~kfs~ETLFYIFY~~Pgd~~QllAA~ 422 (494)
++.+|.+||++.++ ..|. |+++..+|.|||+.+++. ++++.+++| |++||||||||++|+|++|++||+
T Consensus 1 L~~sf~sp~~~~~~~~~~~~y~~P~~~~~~~~~~p~~p~~~~~~~~~~~~k-----~~~eTLFyiFY~~p~~~~Q~~AA~ 75 (134)
T PF04153_consen 1 LYSSFASPPSDSDSRQQEPQYQIPSCYLPTPSSYPQRPPPIILDSPEKFQK-----FSEETLFYIFYYMPGDYQQLLAAK 75 (134)
T ss_pred CccccCCCCCCCCCCCCCCCCCCCCCcCcCccccCCCcCcccccchHHHhh-----cCCceEEEEEeecCCcHHHHHHHH
Confidence 46778888877654 4564 777777899999988877 677777777 999999999999999999999999
Q ss_pred HHhhcCceeecccceeeecccCCccCCCccceeeEEEeccccCccccccccceeeccCeEEechhhh
Q 011072 423 ELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLE 489 (494)
Q Consensus 423 EL~~RgWRYHKe~k~Wf~R~~ePk~~t~~yErGsY~yFD~~~~~d~~~~~W~~r~K~nFtfeY~~LE 489 (494)
||++|||||||++++||+|+++++++++.+|+|+|+|||++ +|++++|.||+|+|++||
T Consensus 76 eL~~R~Wryhk~~~~W~~r~~~~~~~~~~~e~g~y~~FD~~--------~W~~~~k~~f~~~y~~LE 134 (134)
T PF04153_consen 76 ELYKRGWRYHKEYKTWFQRDSEPKPITEQYERGSYVYFDPE--------SWEKRRKKNFTFDYSDLE 134 (134)
T ss_pred HHHHCCcEEecCcCEEeeECCCCCccccceeeeeEEEechH--------HhcCcchhccEEeHHHcC
Confidence 99999999999999999999999999999999999999996 799999999999999998
No 3
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=100.00 E-value=4.3e-35 Score=298.54 Aligned_cols=129 Identities=43% Similarity=0.863 Sum_probs=119.9
Q ss_pred HHhcCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhhhccCCCCCceeEEEeecCCCcHHHHHHHHHHhhcC
Q 011072 349 AFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQS 428 (494)
Q Consensus 349 sy~tfPsPwDsEppR~Y~PrnP~~tP~cYpq~ppP~ldnp~lfeKiKm~kfs~ETLFYIFY~~Pgd~~QllAA~EL~~Rg 428 (494)
++-..|.--|.++ .|+|+.|+++|.+||+.|++.|++..+|.+ |+.||||||||+.+|+++||+||+||++|+
T Consensus 418 SlV~~Pn~~D~~K--kY~P~~P~~~Ps~~P~~PL~~F~S~~if~k-----~D~DTLFfiFY~~~GTyQQY~Aa~eLKk~S 490 (548)
T COG5665 418 SLVLTPNENDTDK--KYKPGKPSKAPSKKPDDPLSRFSSARIFMK-----FDLDTLFFIFYHYQGTYQQYLAARELKKRS 490 (548)
T ss_pred ceeecCCcchhhh--ccCCCCCCCCCCCCCCCccccccHHHHHHh-----cCccceEEEeeeccchHHHHHHHHHHHhhh
Confidence 3344555555554 899999999999999999999999999998 999999999999999999999999999999
Q ss_pred ceeecccceeeecccCCccCCCccceeeEEEeccccCccccccccceeeccCeEEechhhhhh
Q 011072 429 WRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE 491 (494)
Q Consensus 429 WRYHKe~k~Wf~R~~ePk~~t~~yErGsY~yFD~~~~~d~~~~~W~~r~K~nFtfeY~~LE~~ 491 (494)
|||||+|.+||+|+.||+.+|.+||+|+|.||||+ .+|..|.|.||+|.|.|||+.
T Consensus 491 WRFHkKY~TWFQR~~EPK~IT~~~E~Gs~ryFDy~-------~~W~~rKK~DF~F~Y~YLE~~ 546 (548)
T COG5665 491 WRFHKKYRTWFQREIEPKPITGKSEEGSWRYFDYK-------KSWLARKKNDFVFNYEYLEKL 546 (548)
T ss_pred hhhhcchhhhhhhhcccccccCccccCceeEeecc-------chHHHhhcccceeehhhhhhc
Confidence 99999999999999999999999999999999998 699999999999999999974
No 4
>COG5601 CDC36 General negative regulator of transcription subunit [Transcription]
Probab=99.98 E-value=4.4e-34 Score=260.92 Aligned_cols=160 Identities=24% Similarity=0.467 Sum_probs=132.8
Q ss_pred CccccccccCCCcc--ccccCccccccccccccccchhh----hhHHHHHhcCCCCCCCCcCCCCCCCCCCCCCCCCCCC
Q 011072 307 GLGVIGRRSVSDLG--AIGDSLSGATVSSGGMHDQMYNM----QMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQV 380 (494)
Q Consensus 307 LLGvIgRms~~Dl~--AlG~DLT~~~~tLG~~~d~lLnL----nslE~sy~tfPsPwDsEppR~Y~PrnP~~tP~cYpq~ 380 (494)
|+-++ |+.+.+++ .||.||. +++ +.| ...+....++-+||+...-++..| -+.+|.||+..
T Consensus 5 l~pl~-~ied~e~s~~~lg~Dl~----s~~------~sl~~p~~~qDr~~~t~~sPwae~tkk~vqp--~f~lP~cy~n~ 71 (172)
T COG5601 5 LKPLE-QIEDEEQSIHDLGKDLL----SEI------LSLVRPKKYQDRPSTTLYSPWAESTKKPVQP--MFMLPNCYPNA 71 (172)
T ss_pred hhhHH-HHHHhhhhHHHhchhHH----HHH------HhhcCcccccccccccccChhhhhccCcccc--hhcCccccCCC
Confidence 34456 88888887 7999999 555 444 445567777999999884444332 26799999999
Q ss_pred CCCCCCChhhhhhhccCCCCCceeEEEeecCCCcHHHHHHHHHHhhcCceeecccceeeeccc--CCccCCCccceeeEE
Q 011072 381 QAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDEFEQGTYV 458 (494)
Q Consensus 381 ppP~ldnp~lfeKiKm~kfs~ETLFYIFY~~Pgd~~QllAA~EL~~RgWRYHKe~k~Wf~R~~--ePk~~t~~yErGsY~ 458 (494)
|.|+.-+.. .+.+||.+|++||||||||.+|+|++|..|+.||.+|+|||||.+++|++.+. +|.+.++..|||+|+
T Consensus 72 p~pp~f~~~-~~~~k~~~f~dETLFyiFY~~P~dvlQe~ay~el~krnwrfhK~lk~wlT~~p~m~P~~~~~~~ergsyv 150 (172)
T COG5601 72 PNPPIFKVN-IEDMKMDNFHDETLFYIFYSFPNDVLQEKAYDELLKRNWRFHKMLKCWLTFNPGMSPATADHVKERGSYV 150 (172)
T ss_pred CCCCceecc-hHHHHHHhhccceeEEEEeeCCcHHHHHHHHHHHHHhchhhhhhheeeeccCCCCCccccccccccceEE
Confidence 876544444 35689999999999999999999999999999999999999999999999985 788888999999999
Q ss_pred EeccccCccccccccceeeccCeEEechhhh
Q 011072 459 YFDFHIANDDLQHGWCQRIKTEFTFEYNYLE 489 (494)
Q Consensus 459 yFD~~~~~d~~~~~W~~r~K~nFtfeY~~LE 489 (494)
+|||. .|+ |++.||.|+|+.++
T Consensus 151 fFDP~--------~W~-k~~~dfll~y~av~ 172 (172)
T COG5601 151 FFDPF--------SWS-KVSLDFLLDYKAVR 172 (172)
T ss_pred EEcch--------hHH-HHhHHHHHHHHhhC
Confidence 99996 897 99999999999874
No 5
>KOG2151 consensus Predicted transcriptional regulator [Transcription; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.55 E-value=2.1e-15 Score=151.84 Aligned_cols=125 Identities=23% Similarity=0.297 Sum_probs=97.2
Q ss_pred ccCcccccCCCCCCCCCCCCCCCCC------CCccccccccCCCcc---ccccCccccccccccccccchhhhhHHHHHh
Q 011072 281 LTEPAQVVRDTDLSPGQPLQSSQPS------GGLGVIGRRSVSDLG---AIGDSLSGATVSSGGMHDQMYNMQMLESAFY 351 (494)
Q Consensus 281 ~~e~~Q~~rd~~l~~~Q~~qs~~~~------GLLGvIgRms~~Dl~---AlG~DLT~~~~tLG~~~d~lLnLnslE~sy~ 351 (494)
....+|...|.-+ -.+++.|.. |||..| |+.+.|-. .+|.||+ ++| |+|+..|.++.
T Consensus 179 qk~g~q~~Pdg~v---~niP~~m~t~~fgm~gLL~~i-r~~~~~g~~~l~lg~Dl~----~ll------lsla~~~di~~ 244 (312)
T KOG2151|consen 179 QKVGSQPTPDGYV---PNIPSGMETGQFGMKGLLTLI-RGAQGEGQTTLPLGADLN----SLL------LSLAVPEDIIP 244 (312)
T ss_pred hhcccccCCCCcc---cCCCcchhhhhhhhhcchhhh-eecccCcceeeccCCChh----hhh------ccccccccccc
Confidence 3344455566655 346777754 444444 77777622 7899999 999 99999999999
Q ss_pred cCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhhhccCCCCCceeEEEeecCCCcHHHHHHHHHHhhcCc
Q 011072 352 KLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSW 429 (494)
Q Consensus 352 tfPsPwDsEppR~Y~PrnP~~tP~cYpq~ppP~ldnp~lfeKiKm~kfs~ETLFYIFY~~Pgd~~QllAA~EL~~RgW 429 (494)
+|-+||..++++.. -.+.+|.||+..+++.. . .|+..|++|||||+||.+++|.+|..||.||.+|+|
T Consensus 245 ~F~~P~~~~P~~~~---~~~~lp~~y~~v~~~~~-~------~~~~~~~dE~lff~fyt~~~d~~Q~~aa~el~~r~w 312 (312)
T KOG2151|consen 245 TFQGPWGEVPTSQE---ASFNLPNCYLNVNPKLQ-F------SKIDQFQDETLFYIFYTFPGDVMQELAAAELLKRNW 312 (312)
T ss_pred cccCCcccCCcccc---hhhhcchhhhccCCccc-h------HHHhhhcccceeeeeccCCcchhhhhHHHHhhccCC
Confidence 99999999999822 24679999998544332 1 236679999999999999999999999999999999
No 6
>KOG2151 consensus Predicted transcriptional regulator [Transcription; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.12 E-value=1.9e-11 Score=123.53 Aligned_cols=133 Identities=28% Similarity=0.563 Sum_probs=107.5
Q ss_pred ccccCccccccccccccccchhhhhH-HHHHhcCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhh---hcc
Q 011072 321 AIGDSLSGATVSSGGMHDQMYNMQML-ESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWER---LSL 396 (494)
Q Consensus 321 AlG~DLT~~~~tLG~~~d~lLnLnsl-E~sy~tfPsPwDsEppR~Y~PrnP~~tP~cYpq~ppP~ldnp~lfeK---iKm 396 (494)
++|.||+ ++| ++++.- -.+|.+|..||++++.+.- .+...|.||...+. ++.+ ..+
T Consensus 37 ~~~~d~~----~lg------~~~n~~~~~~~~~f~g~~~s~~l~~l---~~~~~P~~~~~~~~-------~~~~~~~~~~ 96 (312)
T KOG2151|consen 37 ALGYDLT----TLG------LNLNLSERKLLMNFAGPWASEPLRHL---LDTKVPEEYMTHRH-------LRSKLPSLRL 96 (312)
T ss_pred eeccchh----ccC------cccccccccccccccCcCCCcccccc---ccccCccccccchh-------hhhcCCcccc
Confidence 7899999 999 665533 3788889999999998843 34568999983322 2222 136
Q ss_pred CCCCCceeEEEeecCCCcHHHHHHHHHHhhcCceeecccceeeeccc--CCccCCCccceeeEEEeccccCccccccccc
Q 011072 397 DSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDEFEQGTYVYFDFHIANDDLQHGWC 474 (494)
Q Consensus 397 ~kfs~ETLFYIFY~~Pgd~~QllAA~EL~~RgWRYHKe~k~Wf~R~~--ePk~~t~~yErGsY~yFD~~~~~d~~~~~W~ 474 (494)
+++...-|||+||++| |.||..|.||||++.+.|+.+.. .++..++.++.|.|..||-. .|+
T Consensus 97 ~kv~~~~l~~~~~~~P--------a~e~~~r~~~~~~~~~~~l~~s~yg~~~~~~~~~~~g~~~~~~q~--------s~~ 160 (312)
T KOG2151|consen 97 NKVGERVLFYLFYNLP--------AGELQAREWRFHKSEQVWLTRSQYGGVKELPGNYMKGHFNVFDQM--------SWR 160 (312)
T ss_pred cccccccceeeeccCC--------CcccccccccccccccccccccccCCccccccchhhchhccccch--------hhh
Confidence 6799999999999999 99999999999999999999974 56777789999999999985 887
Q ss_pred eeeccCeEEechhhhh
Q 011072 475 QRIKTEFTFEYNYLED 490 (494)
Q Consensus 475 ~r~K~nFtfeY~~LE~ 490 (494)
.+-.+-.++|..+|.
T Consensus 161 -~~~ke~~l~~~~~~~ 175 (312)
T KOG2151|consen 161 -KIPKELKLAYSDLED 175 (312)
T ss_pred -hcccchhhccccccc
Confidence 677788888888876
No 7
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=31.40 E-value=37 Score=30.72 Aligned_cols=33 Identities=15% Similarity=0.556 Sum_probs=19.4
Q ss_pred CCCceeEEEeecCCCcHHHHHHHHHHhhcCceeecccceeeecc
Q 011072 399 YGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRH 442 (494)
Q Consensus 399 fs~ETLFYIFY~~Pgd~~QllAA~EL~~RgWRYHKe~k~Wf~R~ 442 (494)
|...-.||||-.-++ . .|||.+|++...||.-.
T Consensus 29 f~i~rvy~i~~~~~~-~----------~RG~H~Hk~~~~~~~~l 61 (131)
T PF05523_consen 29 FEIKRVYYIYNVPPG-V----------IRGWHAHKKTTQWFIVL 61 (131)
T ss_dssp S---EEEEEES--SS-------------EEEEEESS--EEEEEE
T ss_pred CCccEEEEEEcCCCC-C----------cccccccccccEEEEEE
Confidence 556667777665554 2 59999999999999875
No 8
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=17.83 E-value=84 Score=23.97 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=20.9
Q ss_pred ccccccCchhHHHHHHHHHHHHHhcccccCCCCC
Q 011072 121 RGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPL 154 (494)
Q Consensus 121 ~~r~ei~~dq~ek~lq~~qq~qqq~~~~~~~~~~ 154 (494)
+|| +++||+++++++-+. ....+|+|.
T Consensus 10 ~Gr---s~eqk~~l~~~it~~----l~~~~~~p~ 36 (61)
T PRK02220 10 EGR---TEEQLKALVKDVTAA----VSKNTGAPA 36 (61)
T ss_pred CCC---CHHHHHHHHHHHHHH----HHHHhCcCh
Confidence 455 689999999999987 455667765
No 9
>PF06713 bPH_4: Bacterial PH domain; InterPro: IPR009589 This entry is represented by Bacteriophage SP-beta, YolF. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins specific to Oceanobacillus and Bacillus species. Members of this family are typically around 130 residues in length. The function of this family is unknown.
Probab=15.62 E-value=86 Score=25.74 Aligned_cols=18 Identities=33% Similarity=0.637 Sum_probs=15.9
Q ss_pred cccCchhHHHHHHHHHHH
Q 011072 124 TEIAPDQREKFLQRLQQV 141 (494)
Q Consensus 124 ~ei~~dq~ek~lq~~qq~ 141 (494)
.-|+|+.+|.|++.|+..
T Consensus 56 i~IsP~~~~~FI~~L~k~ 73 (74)
T PF06713_consen 56 ILISPKDKEEFIAELQKR 73 (74)
T ss_pred EEEECCCHHHHHHHHHhh
Confidence 679999999999999863
No 10
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=14.21 E-value=1.4e+02 Score=33.60 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=14.6
Q ss_pred chhHHHHHHHHHHHHHhccc
Q 011072 128 PDQREKFLQRLQQVQQQGHS 147 (494)
Q Consensus 128 ~dq~ek~lq~~qq~qqq~~~ 147 (494)
-|||+||+|..+|- ++|.-
T Consensus 487 ~~Qr~rFe~Q~~~k-~~GDD 505 (560)
T KOG1885|consen 487 VDQRQRFEQQARDK-DAGDD 505 (560)
T ss_pred HHHHHHHHHHHHHh-hcCCc
Confidence 48999999988885 55543
Done!