Query 011072
Match_columns 494
No_of_seqs 192 out of 391
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 20:13:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zda_A Mini protein A domain, 11.4 1.2E+02 0.0042 22.1 2.0 15 124-138 21-35 (38)
2 2pa7_A DTDP-6-deoxy-3,4-keto-h 11.0 1.5E+02 0.005 26.3 2.8 33 399-442 31-63 (141)
3 1l6x_B Minimized B-domain of p 10.8 1.2E+02 0.004 21.8 1.7 16 124-139 16-31 (34)
4 3o39_A Periplasmic protein rel 10.3 1.2E+02 0.004 26.0 1.9 15 126-140 91-105 (108)
5 3bbz_A P protein, phosphoprote 8.4 1.4E+02 0.0049 22.8 1.5 15 127-141 17-31 (49)
6 3dl3_A Tellurite resistance pr 8.1 1E+02 0.0034 27.2 0.6 26 388-416 78-104 (119)
7 1tc3_C Protein (TC3 transposas 7.9 1.8E+02 0.0062 18.7 1.7 17 122-138 1-18 (51)
8 3itf_A Periplasmic adaptor pro 7.4 1.8E+02 0.0061 26.1 1.9 19 125-143 118-136 (145)
9 1dzk_A PIG OBP, odorant-bindin 7.3 1.9E+02 0.0067 24.1 2.1 23 119-141 116-139 (157)
10 2hlv_A Odorant-binding protein 7.2 2E+02 0.0068 24.2 2.1 23 119-141 117-140 (160)
No 1
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=11.38 E-value=1.2e+02 Score=22.14 Aligned_cols=15 Identities=13% Similarity=0.383 Sum_probs=13.1
Q ss_pred cccCchhHHHHHHHH
Q 011072 124 TEIAPDQREKFLQRL 138 (494)
Q Consensus 124 ~ei~~dq~ek~lq~~ 138 (494)
+-|+.+||.-|+|.|
T Consensus 21 ~nLtEeQrn~yI~sl 35 (38)
T 1zda_A 21 PNLNEEQRNAKIKSI 35 (38)
T ss_dssp SSSCTTHHHHHHHHH
T ss_pred CCCCHHHHHhHHHHh
Confidence 568899999999987
No 2
>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*
Probab=10.96 E-value=1.5e+02 Score=26.27 Aligned_cols=33 Identities=9% Similarity=0.303 Sum_probs=26.3
Q ss_pred CCCceeEEEeecCCCcHHHHHHHHHHhhcCceeecccceeeecc
Q 011072 399 YGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRH 442 (494)
Q Consensus 399 fs~ETLFYIFY~~Pgd~~QllAA~EL~~RgWRYHKe~k~Wf~R~ 442 (494)
|...-+||||=.-|+. -|+|..|++...||.-.
T Consensus 31 f~ikRvy~~~~~~~g~-----------~RG~H~Hk~~~q~li~l 63 (141)
T 2pa7_A 31 FSIKRVYYIFDTKGEE-----------PRGFHAHKKLEQVLVCL 63 (141)
T ss_dssp SCCCEEEEEESCCSSC-----------CEEEEEESSCCEEEEEE
T ss_pred CCccEEEEEEecCCCC-----------EECcCcCCCceEEEEEE
Confidence 5667788887776776 49999999999998764
No 3
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=10.85 E-value=1.2e+02 Score=21.77 Aligned_cols=16 Identities=13% Similarity=0.391 Sum_probs=13.5
Q ss_pred cccCchhHHHHHHHHH
Q 011072 124 TEIAPDQREKFLQRLQ 139 (494)
Q Consensus 124 ~ei~~dq~ek~lq~~q 139 (494)
+-|+.+||.-|+|.|.
T Consensus 16 ~nLtEeQrn~yI~slk 31 (34)
T 1l6x_B 16 PNLNEEQRNAKIKSIR 31 (34)
T ss_dssp TTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHhHHHHHh
Confidence 4578999999999874
No 4
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=10.29 E-value=1.2e+02 Score=25.99 Aligned_cols=15 Identities=20% Similarity=0.691 Sum_probs=13.1
Q ss_pred cCchhHHHHHHHHHH
Q 011072 126 IAPDQREKFLQRLQQ 140 (494)
Q Consensus 126 i~~dq~ek~lq~~qq 140 (494)
.+|+||+||-+++++
T Consensus 91 LTPEQk~q~~~~~~~ 105 (108)
T 3o39_A 91 LTPEQKKQFNANFEK 105 (108)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 589999999998875
No 5
>3bbz_A P protein, phosphoprotein; molten globule, viral protein, replication; 2.10A {Mumps virus}
Probab=8.40 E-value=1.4e+02 Score=22.81 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=12.4
Q ss_pred CchhHHHHHHHHHHH
Q 011072 127 APDQREKFLQRLQQV 141 (494)
Q Consensus 127 ~~dq~ek~lq~~qq~ 141 (494)
-|++|++|..|+..+
T Consensus 17 np~~r~~Fe~ki~~~ 31 (49)
T 3bbz_A 17 NPQMKQAFEQRLAKA 31 (49)
T ss_dssp SHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhc
Confidence 378999999998754
No 6
>3dl3_A Tellurite resistance protein B; X-RAY NESG VFR98 Q5E3X2_VIBF1, structural genomics, PSI-2, protein structure initiative; 2.30A {Vibrio fischeri ES114} SCOP: b.82.2.13
Probab=8.09 E-value=1e+02 Score=27.17 Aligned_cols=26 Identities=27% Similarity=0.727 Sum_probs=15.7
Q ss_pred hhhhhhhccCCCCCceeEEE-eecCCCcHH
Q 011072 388 PAFWERLSLDSYGTDTLFFA-FYYQQNTYQ 416 (494)
Q Consensus 388 p~lfeKiKm~kfs~ETLFYI-FY~~Pgd~~ 416 (494)
|..|-| +. +++|+-|++ ||..|.|+.
T Consensus 78 Pq~wHr--Ve-~sdD~~f~leFyc~~~dyf 104 (119)
T 3dl3_A 78 PQYWHR--IE-LSDDAQFNINFWSDQDKSG 104 (119)
T ss_dssp TTCEEE--EE-ECTTCEEEEEEEECC----
T ss_pred CCceEE--EE-ECCCeEEEEEEEECchHHh
Confidence 444555 34 899998876 888888874
No 7
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=7.88 E-value=1.8e+02 Score=18.70 Aligned_cols=17 Identities=12% Similarity=0.116 Sum_probs=12.7
Q ss_pred ccc-ccCchhHHHHHHHH
Q 011072 122 GRT-EIAPDQREKFLQRL 138 (494)
Q Consensus 122 ~r~-ei~~dq~ek~lq~~ 138 (494)
||+ .+++++|++++..+
T Consensus 1 GR~~~l~~~~~~~i~~~~ 18 (51)
T 1tc3_C 1 PRGSALSDTERAQLDVMK 18 (51)
T ss_dssp CCSCCCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHH
Confidence 565 67888888888765
No 8
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=7.41 E-value=1.8e+02 Score=26.07 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=14.7
Q ss_pred ccCchhHHHHHHHHHHHHH
Q 011072 125 EIAPDQREKFLQRLQQVQQ 143 (494)
Q Consensus 125 ei~~dq~ek~lq~~qq~qq 143 (494)
-.+|+||+||-+++++--+
T Consensus 118 vLTPEQk~ql~e~~~~r~~ 136 (145)
T 3itf_A 118 LLTPEQQAVLNEKHQQRME 136 (145)
T ss_dssp TSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHH
Confidence 3789999999888776533
No 9
>1dzk_A PIG OBP, odorant-binding protein; lipocalin, transport, olfaction, sensory transduction; HET: PRZ; 1.48A {Sus scrofa} SCOP: b.60.1.1 PDB: 1dzj_A* 1dzm_A* 1dzp_A* 1e00_A* 1e02_A* 1e06_A* 1hqp_A* 1a3y_A
Probab=7.34 E-value=1.9e+02 Score=24.07 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=18.4
Q ss_pred Cccccc-ccCchhHHHHHHHHHHH
Q 011072 119 QFRGRT-EIAPDQREKFLQRLQQV 141 (494)
Q Consensus 119 q~~~r~-ei~~dq~ek~lq~~qq~ 141 (494)
.+-+|+ ++.++.+|+|++.++..
T Consensus 116 ~llsR~~~~~~e~~~~f~~~~~~~ 139 (157)
T 1dzk_A 116 GLLGKGTDIEDQDLEKFKEVTREN 139 (157)
T ss_dssp EEEESSSCCCHHHHHHHHHHHHHT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHc
Confidence 355787 89999999999887643
No 10
>2hlv_A Odorant-binding protein; domain swapping, transport protein; HET: LIK; 1.65A {Bos taurus} PDB: 1gt1_A* 1gt3_A* 1gt4_A* 1gt5_A* 1hn2_A* 1obp_A 1g85_A 1pbo_A*
Probab=7.18 E-value=2e+02 Score=24.23 Aligned_cols=23 Identities=13% Similarity=0.224 Sum_probs=18.5
Q ss_pred Ccccc-cccCchhHHHHHHHHHHH
Q 011072 119 QFRGR-TEIAPDQREKFLQRLQQV 141 (494)
Q Consensus 119 q~~~r-~ei~~dq~ek~lq~~qq~ 141 (494)
.+=+| +++.++.+|+|++.++..
T Consensus 117 ~llsR~~~~~~e~~~~f~~~~~~~ 140 (160)
T 2hlv_A 117 ELFVKGLNVEDEDLEKFWKLTEDK 140 (160)
T ss_dssp EEEECSSSCCHHHHHHHHHHHHHT
T ss_pred EEEccCCCCCHHHHHHHHHHHHHc
Confidence 35578 799999999999987644
Done!