BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011074
         (494 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DRH|A Chain A, Crystal Structure Of The Ph0078 Protein From Pyrococcus
           Horikoshii Ot3
 pdb|2DRH|B Chain B, Crystal Structure Of The Ph0078 Protein From Pyrococcus
           Horikoshii Ot3
 pdb|2DRH|C Chain C, Crystal Structure Of The Ph0078 Protein From Pyrococcus
           Horikoshii Ot3
 pdb|2DRH|D Chain D, Crystal Structure Of The Ph0078 Protein From Pyrococcus
           Horikoshii Ot3
          Length = 361

 Score = 29.6 bits (65), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 11/105 (10%)

Query: 141 IKRDAKQALVNRVKGQGPSFNGTVNSVSRFNQPNRCASTGVETKEVKTNGVSVRPTTLAS 200
           + R AK+A+V   +  G ++NG+ +    F+  NR      E  E+K    SV       
Sbjct: 255 LNRVAKRAIVGLARTGGYAYNGSGDIAVAFSTANRIKHYEKEVIEIKALPDSV------- 307

Query: 201 VSSIRKSAPVKSSSVNEAGNCPLPEVSRFMDQHSKSVTNALPNKE 245
           +S + K+    + +V EA    L E +R MD     V  ALP +E
Sbjct: 308 ISPLFKAT---AEAVEEAIINSLLE-ARTMDGRDNHVRYALPKEE 348


>pdb|2HAG|A Chain A, Crystal Structure Of A Putative Dyp-Type Peroxidase
           Protein (So_0740) From Shewanella Oneidensis At 2.75 A
           Resolution
 pdb|2IIZ|A Chain A, Crystal Structure Of Putative Melanin Biosynthesis Protein
           Tyra With Bound Heme (Np_716371.1) From Shewanella
           Oneidensis At 2.30 A Resolution
          Length = 312

 Score = 28.5 bits (62), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 23/105 (21%)

Query: 353 GRNKSSVA---AKDSSFENGGSCHSPRLNQGPNNSMKGTQANGNKESATSKTPIKKPQPK 409
           GR++  VA   ++D  F+ G   H               Q   +  S   + P+KK +  
Sbjct: 159 GRHRQEVALVGSEDPEFKGGSYIH--------------VQKYAHNLSKWHRLPLKKQEDI 204

Query: 410 L--QSQDSIRRKTEGKPVKSKPKNAGAGNQNLEADGKSEETQNQS 452
           +    QD+I  ++E KP+ S  K     ++N    GKS E   QS
Sbjct: 205 IGRTKQDNIEYESEDKPLTSHIKRVNLKDEN----GKSIEILRQS 245


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.303    0.121    0.322 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,901,622
Number of Sequences: 62578
Number of extensions: 486583
Number of successful extensions: 752
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 750
Number of HSP's gapped (non-prelim): 16
length of query: 494
length of database: 14,973,337
effective HSP length: 103
effective length of query: 391
effective length of database: 8,527,803
effective search space: 3334370973
effective search space used: 3334370973
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 53 (25.0 bits)