BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011074
         (494 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8GYX9|WDL1_ARATH Protein WVD2-like 1 OS=Arabidopsis thaliana GN=WDL1 PE=2 SV=1
          Length = 286

 Score =  104 bits (259), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/114 (49%), Positives = 75/114 (65%), Gaps = 7/114 (6%)

Query: 246 DDETRSTTSSATSRGRRSGVSGFN------FRLEERAERRKEFFSKLEEKIHAKEVEKSN 299
           DDE   + +S+ +   R G SG        FR  +RAE+RKE++ KLEEK  A E E++ 
Sbjct: 98  DDEDNCSIASSVATSMRMGKSGLTYGSAPTFRSAQRAEKRKEYYQKLEEKNQALEAERNE 157

Query: 300 LQEKSKESQEAEIKQLRKSLTFKATPMPSFYKE-PPPKVELKKIPTTRAVSPKF 352
           L+++ K+ QEA +KQLRK+L FKA P+P+FY E PP K ELKK+P TR  SPK 
Sbjct: 158 LEQRQKDEQEAALKQLRKNLKFKAKPVPNFYYEAPPAKPELKKLPLTRPKSPKL 211


>sp|Q84ZT9|WVD2_ARATH Protein WAVE-DAMPENED 2 OS=Arabidopsis thaliana GN=WVD2 PE=2 SV=1
          Length = 202

 Score = 96.7 bits (239), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/131 (45%), Positives = 78/131 (59%), Gaps = 4/131 (3%)

Query: 245 EDDETRSTTSSATSRGRRSGVSGFNFRLEERAERRKEFFSKLEEKIHAKEVEKSNLQEKS 304
           E+D+    +S   ++ + +  +   FR  +RAE+RKE++ KLEEK  A E E+  L+++ 
Sbjct: 64  EEDDCSVASSMKNAKSKVTHGTAPRFRSAQRAEKRKEYYQKLEEKHQALEAERIELEQRQ 123

Query: 305 KESQEAEIKQLRKSLTFKATPMPSFYKE-PPPKVELKKIPTTRAVSPKFG---RNKSSVA 360
           KE QEA IKQLRK+L FKA P+P FY + PP K ELKK P TR  SPK     R   S A
Sbjct: 124 KEEQEAAIKQLRKNLKFKANPVPDFYYQRPPVKPELKKFPLTRPKSPKLNLSRRKSCSDA 183

Query: 361 AKDSSFENGGS 371
              S  EN  S
Sbjct: 184 ITSSGEENSNS 194


>sp|F4I2H7|TPX2_ARATH Protein TPX2 OS=Arabidopsis thaliana GN=TPX2 PE=1 SV=1
          Length = 790

 Score = 36.2 bits (82), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 8/71 (11%)

Query: 265 VSGFNFRLEERAERRKEFFSKLEEKIHAKEVEKSNLQEKSKESQEAE----IKQLRKSLT 320
           +  FN  +E RA  R +F    + KI  KE +    +E+S+ ++  E    +KQ+RK++ 
Sbjct: 644 IQEFNLHVEHRAVERADF----DHKIKEKENQYKRYREESEAAKMVEEERALKQMRKTMV 699

Query: 321 FKATPMPSFYK 331
             A P+P+F K
Sbjct: 700 PHARPVPNFNK 710


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.303    0.120    0.320 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 171,334,204
Number of Sequences: 539616
Number of extensions: 7038998
Number of successful extensions: 26022
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 629
Number of HSP's that attempted gapping in prelim test: 24709
Number of HSP's gapped (non-prelim): 1718
length of query: 494
length of database: 191,569,459
effective HSP length: 122
effective length of query: 372
effective length of database: 125,736,307
effective search space: 46773906204
effective search space used: 46773906204
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 63 (28.9 bits)