Query 011076
Match_columns 494
No_of_seqs 520 out of 3912
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 07:50:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011076.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011076hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0541 Ffh Signal recognition 100.0 2E-117 4E-122 905.8 44.6 430 2-434 1-430 (451)
2 KOG0780 Signal recognition par 100.0 5E-112 1E-116 846.7 43.2 483 1-494 1-483 (483)
3 TIGR01425 SRP54_euk signal rec 100.0 2.3E-98 5E-103 782.4 43.1 427 2-428 1-429 (429)
4 PRK10867 signal recognition pa 100.0 6.4E-95 1.4E-99 760.8 44.1 426 2-434 1-427 (433)
5 PRK00771 signal recognition pa 100.0 9E-93 2E-97 746.0 43.9 423 6-434 1-423 (437)
6 TIGR00959 ffh signal recogniti 100.0 2E-92 4.4E-97 741.6 43.6 426 3-431 1-428 (428)
7 COG0552 FtsY Signal recognitio 100.0 3.1E-49 6.7E-54 394.2 29.0 271 22-296 59-340 (340)
8 PRK14974 cell division protein 100.0 1.6E-45 3.6E-50 376.3 31.3 294 2-296 1-335 (336)
9 PRK10416 signal recognition pa 100.0 2.3E-43 5.1E-48 359.2 32.1 286 4-297 25-316 (318)
10 TIGR00064 ftsY signal recognit 100.0 8.4E-43 1.8E-47 348.4 28.1 264 28-295 3-272 (272)
11 PF00448 SRP54: SRP54-type pro 100.0 3.7E-41 8.1E-46 321.2 19.3 196 101-296 1-196 (196)
12 KOG0781 Signal recognition par 100.0 4.7E-38 1E-42 322.1 21.9 285 10-294 280-585 (587)
13 PRK11889 flhF flagellar biosyn 100.0 1.1E-34 2.4E-39 297.6 26.5 257 28-297 176-435 (436)
14 PRK12723 flagellar biosynthesi 100.0 4.5E-34 9.7E-39 297.1 30.7 258 30-301 109-373 (388)
15 PRK12724 flagellar biosynthesi 100.0 5.6E-34 1.2E-38 296.0 28.6 265 20-295 145-415 (432)
16 PRK12726 flagellar biosynthesi 100.0 5.1E-34 1.1E-38 292.0 27.5 254 33-298 145-401 (407)
17 PRK14723 flhF flagellar biosyn 100.0 5E-34 1.1E-38 314.6 28.2 251 30-298 125-382 (767)
18 PRK06995 flhF flagellar biosyn 100.0 4E-32 8.7E-37 288.2 28.7 275 4-298 173-450 (484)
19 PRK05703 flhF flagellar biosyn 100.0 4E-32 8.7E-37 286.8 27.5 256 25-298 156-416 (424)
20 PRK06731 flhF flagellar biosyn 100.0 1.3E-31 2.9E-36 266.5 22.8 259 25-297 8-269 (270)
21 COG1419 FlhF Flagellar GTP-bin 100.0 3.3E-31 7.2E-36 271.8 22.8 191 101-298 203-397 (407)
22 PF02978 SRP_SPB: Signal pepti 100.0 2.2E-32 4.9E-37 234.0 9.6 100 327-429 1-104 (104)
23 PRK14721 flhF flagellar biosyn 100.0 6.7E-30 1.4E-34 267.7 27.1 249 32-298 134-385 (420)
24 PRK14722 flhF flagellar biosyn 100.0 8E-30 1.7E-34 263.4 27.2 251 33-297 77-339 (374)
25 COG1159 Era GTPase [General fu 100.0 2.6E-31 5.6E-36 261.9 12.8 249 99-420 4-268 (298)
26 PRK12727 flagellar biosynthesi 100.0 6.5E-27 1.4E-31 248.5 25.6 246 30-296 292-541 (559)
27 cd03115 SRP The signal recogni 99.9 9.2E-26 2E-30 210.4 20.6 172 103-274 2-173 (173)
28 TIGR00436 era GTP-binding prot 99.9 1.3E-24 2.8E-29 217.3 12.6 245 103-420 2-260 (270)
29 PRK00089 era GTPase Era; Revie 99.9 2.6E-24 5.7E-29 217.1 13.5 248 100-419 4-264 (292)
30 PRK15494 era GTPase Era; Provi 99.9 1.3E-23 2.8E-28 216.7 12.3 246 100-420 51-312 (339)
31 COG0486 ThdF Predicted GTPase 99.8 4E-20 8.7E-25 192.4 14.0 233 8-312 140-376 (454)
32 TIGR03499 FlhF flagellar biosy 99.8 1.8E-18 3.8E-23 174.3 19.3 149 28-193 132-282 (282)
33 PRK09435 membrane ATPase/prote 99.7 1.8E-16 4E-21 162.3 18.5 223 99-339 54-294 (332)
34 KOG1423 Ras-like GTPase ERA [C 99.7 2.3E-17 5E-22 162.7 7.9 261 99-420 70-367 (379)
35 COG1160 Predicted GTPases [Gen 99.7 6.1E-16 1.3E-20 160.9 15.6 156 102-311 4-164 (444)
36 PRK05291 trmE tRNA modificatio 99.6 9.2E-16 2E-20 164.0 12.6 230 7-312 137-370 (449)
37 TIGR00750 lao LAO/AO transport 99.6 1.2E-14 2.7E-19 147.6 18.4 196 99-311 32-237 (300)
38 COG1703 ArgK Putative periplas 99.6 9.9E-15 2.1E-19 144.5 16.7 195 96-311 46-253 (323)
39 PF03308 ArgK: ArgK protein; 99.6 1.8E-15 4E-20 147.9 9.1 193 99-311 27-229 (266)
40 COG1160 Predicted GTPases [Gen 99.6 1.2E-14 2.6E-19 151.3 13.2 187 77-311 154-350 (444)
41 KOG1191 Mitochondrial GTPase [ 99.6 1.6E-14 3.4E-19 150.6 13.0 243 8-311 190-449 (531)
42 TIGR03156 GTP_HflX GTP-binding 99.6 5E-14 1.1E-18 146.1 15.4 230 8-310 112-350 (351)
43 PRK13768 GTPase; Provisional 99.6 8.6E-14 1.9E-18 138.1 16.0 210 101-313 2-248 (253)
44 COG0378 HypB Ni2+-binding GTPa 99.6 2.9E-14 6.2E-19 133.6 11.6 181 102-310 14-199 (202)
45 PF02421 FeoB_N: Ferrous iron 99.5 7.1E-15 1.5E-19 135.1 7.0 150 103-307 2-156 (156)
46 TIGR00450 mnmE_trmE_thdF tRNA 99.5 5.4E-14 1.2E-18 150.0 13.9 193 7-255 129-325 (442)
47 cd04163 Era Era subfamily. Er 99.5 2.4E-13 5.3E-18 122.6 14.7 160 101-310 3-167 (168)
48 TIGR00073 hypB hydrogenase acc 99.5 8.7E-13 1.9E-17 126.9 15.5 182 100-311 21-206 (207)
49 PRK12298 obgE GTPase CgtA; Rev 99.5 2.1E-13 4.6E-18 143.2 12.1 180 103-334 161-362 (390)
50 cd03114 ArgK-like The function 99.4 1.6E-12 3.5E-17 118.8 13.6 136 103-251 1-148 (148)
51 TIGR03594 GTPase_EngA ribosome 99.4 4.9E-12 1.1E-16 134.4 15.8 157 103-313 1-161 (429)
52 COG3640 CooC CO dehydrogenase 99.4 9.2E-12 2E-16 119.7 15.7 173 103-298 2-232 (255)
53 cd02037 MRP-like MRP (Multiple 99.4 1.2E-11 2.5E-16 115.1 15.3 128 104-252 2-133 (169)
54 PRK10463 hydrogenase nickel in 99.4 1.3E-11 2.9E-16 123.8 15.1 180 101-310 104-287 (290)
55 cd01894 EngA1 EngA1 subfamily. 99.3 1.9E-11 4.1E-16 110.1 13.9 151 105-310 1-156 (157)
56 cd04164 trmE TrmE (MnmE, ThdF, 99.3 2.4E-11 5.2E-16 109.2 14.1 151 103-311 3-156 (157)
57 PHA02518 ParA-like protein; Pr 99.3 2.7E-11 5.9E-16 115.7 14.9 137 103-254 2-147 (211)
58 PRK03003 GTP-binding protein D 99.3 2.2E-11 4.8E-16 131.3 15.4 158 102-313 39-200 (472)
59 PRK11058 GTPase HflX; Provisio 99.3 2.4E-11 5.2E-16 129.1 15.4 155 103-312 199-362 (426)
60 cd02117 NifH_like This family 99.3 1.8E-11 3.9E-16 118.1 13.0 144 103-253 2-188 (212)
61 cd01895 EngA2 EngA2 subfamily. 99.3 4.7E-11 1E-15 108.8 14.6 163 101-310 2-173 (174)
62 PF10662 PduV-EutP: Ethanolami 99.3 7.3E-12 1.6E-16 113.1 8.9 137 102-309 2-143 (143)
63 PRK03003 GTP-binding protein D 99.3 3.9E-11 8.5E-16 129.4 16.1 165 100-312 210-382 (472)
64 TIGR00101 ureG urease accessor 99.3 3.8E-11 8.2E-16 115.1 13.4 184 101-311 1-195 (199)
65 PRK09518 bifunctional cytidyla 99.3 1E-10 2.2E-15 132.1 18.8 158 102-313 276-437 (712)
66 PRK13849 putative crown gall t 99.3 8.5E-11 1.8E-15 115.2 15.7 141 102-252 2-152 (231)
67 PRK00093 GTP-binding protein D 99.3 5.7E-11 1.2E-15 126.6 15.6 155 103-311 3-161 (435)
68 PF03029 ATP_bind_1: Conserved 99.3 2E-11 4.4E-16 120.1 10.8 144 106-254 1-170 (238)
69 TIGR03594 GTPase_EngA ribosome 99.3 1.1E-10 2.5E-15 123.9 17.4 187 77-311 149-343 (429)
70 KOG1532 GTPase XAB1, interacts 99.3 2.8E-11 6.1E-16 118.3 11.0 208 99-313 17-265 (366)
71 cd00881 GTP_translation_factor 99.3 1E-10 2.2E-15 108.7 14.3 180 104-312 2-187 (189)
72 PRK09518 bifunctional cytidyla 99.3 8.8E-11 1.9E-15 132.6 16.6 163 101-312 450-621 (712)
73 TIGR01007 eps_fam capsular exo 99.2 2.5E-10 5.3E-15 109.3 16.7 145 101-253 17-193 (204)
74 cd01878 HflX HflX subfamily. 99.2 8.1E-11 1.8E-15 112.2 13.3 154 102-310 42-203 (204)
75 PRK00093 GTP-binding protein D 99.2 1.7E-10 3.7E-15 122.9 16.9 163 101-311 173-343 (435)
76 smart00053 DYNc Dynamin, GTPas 99.2 7.3E-11 1.6E-15 116.1 12.7 152 103-264 28-216 (240)
77 PRK15467 ethanolamine utilizat 99.2 4.3E-11 9.4E-16 110.2 10.4 145 103-313 3-148 (158)
78 cd01898 Obg Obg subfamily. Th 99.2 6.6E-11 1.4E-15 108.5 11.3 153 104-310 3-169 (170)
79 TIGR01969 minD_arch cell divis 99.2 2E-10 4.4E-15 112.6 15.0 142 103-253 2-173 (251)
80 cd03110 Fer4_NifH_child This p 99.2 4.3E-10 9.4E-15 105.2 15.9 153 104-271 3-175 (179)
81 PF01656 CbiA: CobQ/CobB/MinD/ 99.2 8.1E-11 1.8E-15 110.6 11.0 141 105-253 3-161 (195)
82 PF00009 GTP_EFTU: Elongation 99.2 3.7E-11 7.9E-16 113.6 8.4 173 102-312 4-187 (188)
83 cd02040 NifH NifH gene encodes 99.2 1.9E-10 4.2E-15 114.3 13.7 42 102-143 2-43 (270)
84 COG1084 Predicted GTPase [Gene 99.2 1.9E-10 4.1E-15 115.5 13.5 119 101-255 168-295 (346)
85 PRK09866 hypothetical protein; 99.2 4.2E-10 9.1E-15 122.2 16.6 113 183-310 229-351 (741)
86 PRK11670 antiporter inner memb 99.2 6.7E-10 1.4E-14 116.1 17.3 148 100-253 106-282 (369)
87 cd01887 IF2_eIF5B IF2/eIF5B (i 99.2 3.2E-10 6.9E-15 103.6 12.9 160 103-311 2-165 (168)
88 CHL00175 minD septum-site dete 99.2 5.3E-10 1.2E-14 112.3 15.3 146 100-253 14-191 (281)
89 PRK09554 feoB ferrous iron tra 99.2 3E-10 6.5E-15 128.6 14.5 145 102-283 4-160 (772)
90 cd00880 Era_like Era (E. coli 99.2 3.3E-10 7.2E-15 100.5 11.7 157 106-310 1-162 (163)
91 PRK13185 chlL protochlorophyll 99.1 7.1E-10 1.5E-14 110.7 15.1 41 102-142 3-43 (270)
92 PRK13235 nifH nitrogenase redu 99.1 3.2E-10 6.9E-15 113.7 12.5 41 102-142 2-42 (274)
93 cd02035 ArsA ArsA ATPase funct 99.1 5.5E-10 1.2E-14 108.3 13.7 146 103-253 1-183 (217)
94 CHL00072 chlL photochlorophyll 99.1 7.2E-10 1.6E-14 112.3 15.2 157 104-270 3-199 (290)
95 cd02036 MinD Bacterial cell di 99.1 9.8E-10 2.1E-14 102.0 14.9 124 104-255 2-129 (179)
96 TIGR03371 cellulose_yhjQ cellu 99.1 9E-10 2E-14 107.9 15.2 144 102-254 2-182 (246)
97 cd01852 AIG1 AIG1 (avrRpt2-ind 99.1 2.3E-10 5.1E-15 108.8 10.7 119 103-255 2-131 (196)
98 cd02032 Bchl_like This family 99.1 5.2E-10 1.1E-14 111.6 13.6 143 103-252 2-184 (267)
99 TIGR03018 pepcterm_TyrKin exop 99.1 1.7E-09 3.6E-14 104.1 16.6 141 100-248 34-207 (207)
100 PRK12299 obgE GTPase CgtA; Rev 99.1 1.8E-10 3.9E-15 118.9 10.4 158 103-312 160-328 (335)
101 cd03112 CobW_like The function 99.1 4.9E-10 1.1E-14 103.4 12.1 144 103-252 2-158 (158)
102 PF01926 MMR_HSR1: 50S ribosom 99.1 4.3E-10 9.3E-15 97.6 11.0 110 104-249 2-116 (116)
103 cd01890 LepA LepA subfamily. 99.1 9.1E-10 2E-14 102.1 13.3 107 183-312 66-177 (179)
104 TIGR01281 DPOR_bchL light-inde 99.1 9.3E-10 2E-14 109.7 13.8 39 103-141 2-40 (268)
105 PF07015 VirC1: VirC1 protein; 99.1 1.2E-09 2.7E-14 105.9 14.0 137 103-252 3-152 (231)
106 PRK12296 obgE GTPase CgtA; Rev 99.1 2.9E-10 6.3E-15 122.2 10.6 157 102-312 160-340 (500)
107 TIGR03029 EpsG chain length de 99.1 1.9E-09 4.2E-14 107.9 16.0 142 100-249 102-274 (274)
108 cd04171 SelB SelB subfamily. 99.1 6.6E-10 1.4E-14 100.8 11.0 156 103-309 2-163 (164)
109 PRK13230 nitrogenase reductase 99.1 6.8E-10 1.5E-14 111.6 12.1 41 102-142 2-42 (279)
110 TIGR03598 GTPase_YsxC ribosome 99.1 9.8E-10 2.1E-14 102.8 12.4 115 101-254 18-143 (179)
111 PRK04213 GTP-binding protein; 99.1 1.5E-09 3.4E-14 103.0 14.0 160 102-314 10-194 (201)
112 cd01879 FeoB Ferrous iron tran 99.1 6.8E-10 1.5E-14 100.2 10.9 112 183-311 42-156 (158)
113 PRK13232 nifH nitrogenase redu 99.1 7.7E-10 1.7E-14 110.8 12.1 43 102-144 2-44 (273)
114 PRK11519 tyrosine kinase; Prov 99.1 3.8E-09 8.2E-14 119.6 19.0 146 100-253 525-701 (719)
115 cd00550 ArsA_ATPase Oxyanion-t 99.1 2.6E-09 5.7E-14 106.1 15.5 39 103-141 2-40 (254)
116 TIGR02528 EutP ethanolamine ut 99.1 6.1E-10 1.3E-14 99.5 9.8 138 103-308 2-141 (142)
117 cd02033 BchX Chlorophyllide re 99.1 1.9E-09 4.1E-14 110.7 14.6 45 99-143 29-73 (329)
118 cd04168 TetM_like Tet(M)-like 99.1 4.3E-09 9.3E-14 103.6 16.5 141 182-345 62-208 (237)
119 COG2262 HflX GTPases [General 99.1 9.1E-10 2E-14 113.7 12.0 155 102-312 193-356 (411)
120 cd01897 NOG NOG1 is a nucleola 99.1 1.6E-09 3.4E-14 99.3 12.4 153 103-311 2-167 (168)
121 cd01884 EF_Tu EF-Tu subfamily. 99.1 2.1E-09 4.5E-14 102.7 13.6 124 103-254 4-132 (195)
122 PRK09841 cryptic autophosphory 99.1 4.9E-09 1.1E-13 118.8 18.8 148 99-254 529-707 (726)
123 PF02492 cobW: CobW/HypB/UreG, 99.1 8.8E-10 1.9E-14 103.6 10.7 148 103-255 2-156 (178)
124 cd04170 EF-G_bact Elongation f 99.1 7E-09 1.5E-13 103.7 17.5 156 182-345 62-239 (268)
125 cd01886 EF-G Elongation factor 99.1 1.7E-09 3.6E-14 108.5 12.9 215 104-345 2-241 (270)
126 cd01881 Obg_like The Obg-like 99.1 7.8E-10 1.7E-14 101.7 9.7 151 106-310 1-175 (176)
127 cd04160 Arfrp1 Arfrp1 subfamil 99.0 1.4E-09 3.1E-14 99.4 11.2 109 183-309 49-166 (167)
128 cd04166 CysN_ATPS CysN_ATPS su 99.0 3E-09 6.4E-14 102.4 13.8 67 182-254 75-144 (208)
129 TIGR02016 BchX chlorophyllide 99.0 2.7E-09 5.9E-14 108.4 14.0 163 102-272 1-211 (296)
130 PRK12297 obgE GTPase CgtA; Rev 99.0 1.2E-09 2.6E-14 115.8 11.7 154 103-312 160-327 (424)
131 COG0489 Mrp ATPases involved i 99.0 5E-09 1.1E-13 104.8 15.2 147 101-254 57-233 (265)
132 PRK10818 cell division inhibit 99.0 4.8E-09 1E-13 104.7 15.0 145 102-254 3-187 (270)
133 COG0370 FeoB Fe2+ transport sy 99.0 8.5E-10 1.8E-14 120.2 9.5 136 102-274 4-145 (653)
134 cd01891 TypA_BipA TypA (tyrosi 99.0 5.1E-09 1.1E-13 99.2 13.7 65 183-254 64-131 (194)
135 PRK13869 plasmid-partitioning 99.0 7.6E-09 1.6E-13 109.6 16.3 42 101-142 121-163 (405)
136 PRK13233 nifH nitrogenase redu 99.0 6.3E-09 1.4E-13 104.2 14.8 43 102-144 3-46 (275)
137 TIGR02729 Obg_CgtA Obg family 99.0 1.8E-09 3.8E-14 111.3 11.0 155 103-311 159-328 (329)
138 cd04156 ARLTS1 ARLTS1 subfamil 99.0 4.9E-09 1.1E-13 95.2 12.6 150 104-309 2-159 (160)
139 TIGR01287 nifH nitrogenase iro 99.0 2.7E-09 5.9E-14 106.8 11.9 40 103-142 2-41 (275)
140 PRK10037 cell division protein 99.0 6.1E-09 1.3E-13 103.0 14.3 138 103-252 3-175 (250)
141 PRK00454 engB GTP-binding prot 99.0 7.4E-09 1.6E-13 97.5 14.1 158 101-312 24-194 (196)
142 PRK13234 nifH nitrogenase redu 99.0 2.8E-09 6E-14 108.2 12.0 43 102-144 5-47 (295)
143 TIGR01005 eps_transp_fam exopo 99.0 5.9E-09 1.3E-13 118.7 15.9 148 99-254 544-722 (754)
144 COG0218 Predicted GTPase [Gene 99.0 8.1E-09 1.8E-13 97.8 13.9 158 102-312 25-197 (200)
145 TIGR01968 minD_bact septum sit 99.0 9E-09 2E-13 101.4 14.9 143 102-253 2-176 (261)
146 smart00178 SAR Sar1p-like memb 99.0 6.5E-09 1.4E-13 97.8 13.2 158 102-310 18-183 (184)
147 TIGR00231 small_GTP small GTP- 99.0 2E-09 4.4E-14 95.4 9.1 153 103-308 3-160 (161)
148 PRK13705 plasmid-partitioning 99.0 1.1E-08 2.3E-13 107.8 15.6 45 99-143 104-150 (388)
149 cd04165 GTPBP1_like GTPBP1-lik 99.0 4.7E-09 1E-13 102.4 11.9 197 104-309 2-220 (224)
150 cd02038 FleN-like FleN is a me 99.0 5.9E-09 1.3E-13 94.1 11.4 103 106-254 5-111 (139)
151 cd01889 SelB_euk SelB subfamil 99.0 3.9E-09 8.4E-14 99.9 10.7 114 182-312 66-186 (192)
152 cd04157 Arl6 Arl6 subfamily. 99.0 8.8E-09 1.9E-13 93.5 12.5 107 183-309 44-161 (162)
153 cd01864 Rab19 Rab19 subfamily. 99.0 4.8E-09 1E-13 96.1 10.8 106 184-310 52-164 (165)
154 cd04159 Arl10_like Arl10-like 99.0 1.1E-08 2.4E-13 91.5 12.9 148 104-309 2-158 (159)
155 cd04154 Arl2 Arl2 subfamily. 99.0 4.6E-09 9.9E-14 97.4 10.7 148 102-308 15-171 (173)
156 TIGR03453 partition_RepA plasm 99.0 3E-08 6.6E-13 104.4 18.3 44 99-142 102-146 (387)
157 cd04145 M_R_Ras_like M-Ras/R-R 98.9 6.3E-09 1.4E-13 94.6 11.2 153 102-311 3-163 (164)
158 cd04155 Arl3 Arl3 subfamily. 98.9 7E-09 1.5E-13 95.5 11.6 150 101-309 14-172 (173)
159 cd01853 Toc34_like Toc34-like 98.9 1.3E-08 2.8E-13 100.9 14.1 122 101-257 31-166 (249)
160 PF06564 YhjQ: YhjQ protein; 98.9 1.6E-08 3.5E-13 99.3 14.6 143 102-257 2-180 (243)
161 TIGR03815 CpaE_hom_Actino heli 98.9 5E-08 1.1E-12 100.1 18.8 117 100-225 92-238 (322)
162 PRK13236 nitrogenase reductase 98.9 1.3E-08 2.8E-13 103.5 13.9 43 101-143 6-48 (296)
163 cd02042 ParA ParA and ParB of 98.9 9.2E-09 2E-13 87.5 10.9 72 103-225 1-73 (104)
164 cd04142 RRP22 RRP22 subfamily. 98.9 9.6E-09 2.1E-13 98.2 12.1 160 103-311 2-173 (198)
165 cd03111 CpaE_like This protein 98.9 1.1E-08 2.3E-13 88.2 11.2 73 104-225 2-76 (106)
166 smart00173 RAS Ras subfamily o 98.9 9.4E-09 2E-13 93.7 11.5 151 103-311 2-161 (164)
167 cd00878 Arf_Arl Arf (ADP-ribos 98.9 1.7E-08 3.6E-13 91.6 12.9 148 104-309 2-157 (158)
168 cd04169 RF3 RF3 subfamily. Pe 98.9 6.6E-08 1.4E-12 96.9 18.2 215 102-344 3-237 (267)
169 cd01861 Rab6 Rab6 subfamily. 98.9 7.7E-09 1.7E-13 93.9 10.5 153 103-310 2-160 (161)
170 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.9 2E-08 4.3E-13 93.4 13.3 150 102-309 16-173 (174)
171 PHA02519 plasmid partition pro 98.9 1.4E-08 3E-13 106.9 13.5 45 98-142 103-149 (387)
172 cd01896 DRG The developmentall 98.9 1.1E-08 2.3E-13 100.5 11.7 86 103-226 2-90 (233)
173 cd01876 YihA_EngB The YihA (En 98.9 2.4E-08 5.2E-13 90.2 13.1 159 104-311 2-170 (170)
174 cd04104 p47_IIGP_like p47 (47- 98.9 9.4E-09 2E-13 98.1 10.9 117 184-314 52-186 (197)
175 cd01888 eIF2_gamma eIF2-gamma 98.9 1.3E-08 2.9E-13 97.5 11.9 113 184-313 83-200 (203)
176 PRK13231 nitrogenase reductase 98.9 7.6E-09 1.6E-13 103.0 10.6 40 102-142 3-42 (264)
177 cd00879 Sar1 Sar1 subfamily. 98.9 2.5E-08 5.4E-13 93.6 13.3 162 101-310 19-189 (190)
178 cd00154 Rab Rab family. Rab G 98.9 1.1E-08 2.3E-13 91.4 10.3 150 103-308 2-158 (159)
179 COG1192 Soj ATPases involved i 98.9 2.3E-08 5E-13 99.1 13.6 43 101-143 2-46 (259)
180 cd04158 ARD1 ARD1 subfamily. 98.9 2.1E-08 4.6E-13 92.7 12.5 152 104-314 2-163 (169)
181 cd04119 RJL RJL (RabJ-Like) su 98.9 1.6E-08 3.4E-13 92.0 11.3 154 103-311 2-166 (168)
182 PF09140 MipZ: ATPase MipZ; I 98.9 1.2E-08 2.5E-13 99.8 10.9 93 103-196 2-111 (261)
183 cd01862 Rab7 Rab7 subfamily. 98.9 1E-08 2.2E-13 94.0 10.1 107 184-311 49-166 (172)
184 cd01860 Rab5_related Rab5-rela 98.9 1.2E-08 2.7E-13 92.7 10.6 153 103-311 3-162 (163)
185 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.9 1.1E-08 2.4E-13 93.7 10.3 153 103-311 4-163 (166)
186 cd04151 Arl1 Arl1 subfamily. 98.9 2.1E-08 4.5E-13 91.4 11.7 107 183-309 42-157 (158)
187 smart00175 RAB Rab subfamily o 98.9 1.2E-08 2.5E-13 92.7 10.0 153 103-311 2-161 (164)
188 COG2894 MinD Septum formation 98.9 2.5E-08 5.4E-13 95.2 12.3 161 103-271 4-207 (272)
189 TIGR00991 3a0901s02IAP34 GTP-b 98.9 2.5E-08 5.4E-13 101.1 13.1 120 101-255 38-168 (313)
190 PLN03127 Elongation factor Tu; 98.9 2.9E-08 6.3E-13 106.3 14.3 126 101-254 61-191 (447)
191 cd01863 Rab18 Rab18 subfamily. 98.9 2.2E-08 4.7E-13 91.0 11.4 151 103-310 2-160 (161)
192 cd04113 Rab4 Rab4 subfamily. 98.9 1.4E-08 3.1E-13 92.3 10.2 106 183-310 48-160 (161)
193 cd04137 RheB Rheb (Ras Homolog 98.9 1.1E-08 2.3E-13 95.2 9.5 152 102-311 2-162 (180)
194 cd04139 RalA_RalB RalA/RalB su 98.9 1.5E-08 3.3E-13 91.8 10.2 107 183-311 47-161 (164)
195 COG1341 Predicted GTPase or GT 98.8 2.2E-08 4.7E-13 103.7 12.3 121 98-224 70-211 (398)
196 smart00177 ARF ARF-like small 98.8 3.4E-08 7.3E-13 92.1 12.6 151 102-311 14-173 (175)
197 cd04161 Arl2l1_Arl13_like Arl2 98.8 2.7E-08 5.9E-13 92.0 11.8 105 104-254 2-114 (167)
198 cd01866 Rab2 Rab2 subfamily. 98.8 1.8E-08 3.8E-13 93.0 10.4 154 102-311 5-165 (168)
199 cd04136 Rap_like Rap-like subf 98.8 2.6E-08 5.6E-13 90.5 11.4 104 184-310 49-161 (163)
200 cd04138 H_N_K_Ras_like H-Ras/N 98.8 2.9E-08 6.3E-13 89.6 11.6 150 103-310 3-160 (162)
201 CHL00071 tufA elongation facto 98.8 1.7E-08 3.7E-13 107.0 11.5 129 101-255 12-143 (409)
202 TIGR00437 feoB ferrous iron tr 98.8 1.1E-08 2.3E-13 113.3 10.0 109 183-311 40-154 (591)
203 cd00876 Ras Ras family. The R 98.8 3.9E-08 8.5E-13 88.6 12.0 150 104-310 2-159 (160)
204 PRK00049 elongation factor Tu; 98.8 3.9E-08 8.4E-13 103.9 13.7 126 101-254 12-142 (396)
205 cd02034 CooC The accessory pro 98.8 1.6E-08 3.5E-13 88.7 9.1 88 104-195 2-98 (116)
206 cd01883 EF1_alpha Eukaryotic e 98.8 3E-08 6.4E-13 96.2 11.7 66 182-253 75-150 (219)
207 cd01868 Rab11_like Rab11-like. 98.8 1.8E-08 4E-13 92.0 9.8 150 103-310 5-163 (165)
208 cd01867 Rab8_Rab10_Rab13_like 98.8 2.8E-08 6E-13 91.4 10.9 154 102-311 4-164 (167)
209 PRK12735 elongation factor Tu; 98.8 5.1E-08 1.1E-12 103.0 14.4 126 101-254 12-142 (396)
210 cd04149 Arf6 Arf6 subfamily. 98.8 4.7E-08 1E-12 90.6 12.4 149 102-309 10-167 (168)
211 TIGR00491 aIF-2 translation in 98.8 3.7E-08 8.1E-13 108.6 13.7 184 100-309 3-213 (590)
212 PLN03118 Rab family protein; P 98.8 3.6E-08 7.9E-13 94.7 12.0 154 101-311 14-176 (211)
213 PRK12736 elongation factor Tu; 98.8 4.3E-08 9.4E-13 103.5 13.7 173 101-312 12-201 (394)
214 COG0523 Putative GTPases (G3E 98.8 1.2E-08 2.6E-13 104.6 9.0 149 103-256 3-161 (323)
215 cd04114 Rab30 Rab30 subfamily. 98.8 3.2E-08 6.9E-13 90.7 11.0 105 184-310 56-167 (169)
216 cd04147 Ras_dva Ras-dva subfam 98.8 3.2E-08 7E-13 94.1 11.3 109 184-312 47-163 (198)
217 cd04135 Tc10 TC10 subfamily. 98.8 9E-09 2E-13 94.9 7.0 119 183-310 47-172 (174)
218 cd01865 Rab3 Rab3 subfamily. 98.8 2.7E-08 5.9E-13 91.3 10.0 153 103-311 3-162 (165)
219 cd04101 RabL4 RabL4 (Rab-like4 98.8 3.4E-08 7.4E-13 90.0 10.5 108 183-311 51-163 (164)
220 cd01893 Miro1 Miro1 subfamily. 98.8 4.7E-08 1E-12 90.0 11.3 108 183-311 46-163 (166)
221 cd00157 Rho Rho (Ras homology) 98.8 8.4E-09 1.8E-13 94.5 6.1 160 103-309 2-170 (171)
222 PRK12317 elongation factor 1-a 98.8 2.7E-08 5.9E-13 106.0 10.7 67 182-254 82-153 (425)
223 cd04123 Rab21 Rab21 subfamily. 98.8 4.3E-08 9.4E-13 88.5 10.5 106 183-310 48-160 (162)
224 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.8 9.3E-08 2E-12 89.8 12.7 109 183-311 51-169 (183)
225 cd04110 Rab35 Rab35 subfamily. 98.8 5.9E-08 1.3E-12 92.5 11.3 153 102-311 7-166 (199)
226 cd04150 Arf1_5_like Arf1-Arf5- 98.8 1E-07 2.3E-12 87.3 12.5 148 103-309 2-158 (159)
227 cd04106 Rab23_lke Rab23-like s 98.8 7E-08 1.5E-12 87.6 11.3 104 183-309 50-160 (162)
228 cd04107 Rab32_Rab38 Rab38/Rab3 98.8 4.4E-08 9.5E-13 93.4 10.3 108 183-311 49-167 (201)
229 TIGR00484 EF-G translation elo 98.8 1.3E-07 2.7E-12 106.8 15.6 128 101-254 10-141 (689)
230 cd04124 RabL2 RabL2 subfamily. 98.7 3.8E-08 8.2E-13 90.2 8.9 104 183-311 48-157 (161)
231 cd01983 Fer4_NifH The Fer4_Nif 98.7 1.3E-07 2.8E-12 77.8 11.0 70 103-225 1-70 (99)
232 cd01870 RhoA_like RhoA-like su 98.7 3.4E-08 7.4E-13 91.1 8.3 164 103-310 3-173 (175)
233 cd04140 ARHI_like ARHI subfami 98.7 1.1E-07 2.4E-12 87.3 11.7 106 183-310 48-163 (165)
234 TIGR00485 EF-Tu translation el 98.7 1E-07 2.2E-12 100.7 13.0 126 101-254 12-142 (394)
235 TIGR00487 IF-2 translation ini 98.7 1.1E-07 2.4E-12 104.9 13.7 158 100-309 86-247 (587)
236 COG1163 DRG Predicted GTPase [ 98.7 7.9E-08 1.7E-12 96.7 11.2 104 92-231 54-158 (365)
237 PRK04004 translation initiatio 98.7 8.5E-08 1.8E-12 106.0 12.5 62 185-253 72-136 (586)
238 TIGR01394 TypA_BipA GTP-bindin 98.7 9.3E-08 2E-12 105.7 12.9 176 102-313 2-192 (594)
239 PRK05506 bifunctional sulfate 98.7 3E-08 6.5E-13 110.8 9.1 67 182-254 102-171 (632)
240 cd04144 Ras2 Ras2 subfamily. 98.7 7.9E-08 1.7E-12 90.8 10.7 106 184-311 47-162 (190)
241 smart00174 RHO Rho (Ras homolo 98.7 2.1E-08 4.5E-13 92.5 6.5 120 183-311 45-171 (174)
242 PRK11537 putative GTP-binding 98.7 4.2E-08 9.2E-13 100.6 9.4 148 102-255 5-165 (318)
243 PRK05124 cysN sulfate adenylyl 98.7 5.4E-08 1.2E-12 105.1 10.6 65 182-254 105-174 (474)
244 TIGR01393 lepA GTP-binding pro 98.7 1.1E-07 2.5E-12 105.2 13.2 108 183-313 69-181 (595)
245 PTZ00133 ADP-ribosylation fact 98.7 1.7E-07 3.6E-12 88.2 12.5 151 102-311 18-177 (182)
246 CHL00189 infB translation init 98.7 1.2E-07 2.7E-12 106.5 13.4 164 99-311 242-409 (742)
247 PRK00741 prfC peptide chain re 98.7 1.3E-07 2.9E-12 103.2 13.4 130 101-254 10-145 (526)
248 PLN00223 ADP-ribosylation fact 98.7 2.2E-07 4.8E-12 87.4 13.1 150 103-311 19-177 (181)
249 cd04175 Rap1 Rap1 subgroup. T 98.7 1.1E-07 2.4E-12 86.8 10.5 106 183-311 48-162 (164)
250 PRK05433 GTP-binding protein L 98.7 1.3E-07 2.8E-12 104.8 12.8 108 183-313 73-185 (600)
251 PRK10218 GTP-binding protein; 98.7 1.6E-07 3.4E-12 104.0 13.3 174 101-312 5-195 (607)
252 cd00882 Ras_like_GTPase Ras-li 98.7 1.1E-07 2.3E-12 83.0 9.7 105 183-308 44-156 (157)
253 PRK00007 elongation factor G; 98.7 2.2E-07 4.8E-12 104.8 14.7 129 101-254 10-141 (693)
254 cd04127 Rab27A Rab27a subfamil 98.7 1.4E-07 3E-12 87.6 10.9 106 183-310 62-175 (180)
255 PRK05306 infB translation init 98.7 1.6E-07 3.5E-12 106.4 13.3 158 99-309 288-449 (787)
256 TIGR02034 CysN sulfate adenyly 98.7 9.6E-08 2.1E-12 101.3 10.9 67 182-254 78-147 (406)
257 COG0455 flhG Antiactivator of 98.7 4.1E-07 8.9E-12 90.8 14.6 145 101-254 2-180 (262)
258 cd04112 Rab26 Rab26 subfamily. 98.7 1.1E-07 2.4E-12 89.9 10.0 108 183-312 49-163 (191)
259 cd01892 Miro2 Miro2 subfamily. 98.7 1.4E-07 3E-12 87.5 10.4 157 101-311 4-165 (169)
260 TIGR00475 selB selenocysteine- 98.7 8.7E-08 1.9E-12 105.9 10.5 159 103-312 2-166 (581)
261 cd04148 RGK RGK subfamily. Th 98.7 1.6E-07 3.4E-12 91.3 11.1 105 183-311 49-162 (221)
262 PTZ00369 Ras-like protein; Pro 98.7 1.6E-07 3.5E-12 88.6 10.9 153 102-311 6-166 (189)
263 cd04122 Rab14 Rab14 subfamily. 98.7 1.6E-07 3.5E-12 86.1 10.4 107 183-310 50-162 (166)
264 cd00877 Ran Ran (Ras-related n 98.7 1.7E-07 3.8E-12 86.5 10.6 105 183-311 48-158 (166)
265 TIGR00993 3a0901s04IAP86 chlor 98.7 1.9E-07 4.2E-12 102.1 12.4 120 101-255 118-251 (763)
266 cd04109 Rab28 Rab28 subfamily. 98.6 2.5E-07 5.5E-12 89.3 11.9 108 183-311 49-165 (215)
267 cd04116 Rab9 Rab9 subfamily. 98.6 2E-07 4.4E-12 85.7 10.7 106 183-310 53-169 (170)
268 KOG1489 Predicted GTP-binding 98.6 1.2E-07 2.5E-12 95.1 9.4 149 104-310 199-365 (366)
269 TIGR00503 prfC peptide chain r 98.6 2.1E-07 4.7E-12 101.6 12.5 132 101-254 11-146 (527)
270 cd04176 Rap2 Rap2 subgroup. T 98.6 2.4E-07 5.1E-12 84.5 10.9 105 184-311 49-162 (163)
271 COG0003 ArsA Predicted ATPase 98.6 6.9E-08 1.5E-12 98.9 8.0 40 101-140 2-41 (322)
272 cd04125 RabA_like RabA-like su 98.6 1.8E-07 3.9E-12 87.9 10.2 154 103-311 2-161 (188)
273 cd04118 Rab24 Rab24 subfamily. 98.6 7.6E-08 1.6E-12 90.7 7.6 108 184-311 50-165 (193)
274 PRK10512 selenocysteinyl-tRNA- 98.6 3.2E-07 6.9E-12 102.0 13.5 161 103-312 2-166 (614)
275 cd04177 RSR1 RSR1 subgroup. R 98.6 2.8E-07 6.2E-12 84.8 10.9 107 183-310 48-162 (168)
276 TIGR03680 eif2g_arch translati 98.6 2.2E-07 4.8E-12 98.5 10.8 113 183-312 79-196 (406)
277 cd04132 Rho4_like Rho4-like su 98.6 2.8E-07 6.1E-12 86.3 10.4 109 183-311 48-166 (187)
278 cd04146 RERG_RasL11_like RERG/ 98.6 3.2E-07 6.9E-12 84.0 10.4 106 184-310 47-162 (165)
279 cd04130 Wrch_1 Wrch-1 subfamil 98.6 1.3E-07 2.8E-12 87.6 7.9 116 184-308 48-170 (173)
280 PRK12739 elongation factor G; 98.6 6.7E-07 1.4E-11 101.0 15.0 129 101-254 8-139 (691)
281 cd04167 Snu114p Snu114p subfam 98.6 4.3E-07 9.3E-12 87.6 11.5 64 183-253 70-136 (213)
282 cd04162 Arl9_Arfrp2_like Arl9/ 98.6 6.7E-07 1.4E-11 82.5 12.3 106 104-254 2-113 (164)
283 cd04115 Rab33B_Rab33A Rab33B/R 98.6 2.9E-07 6.2E-12 85.0 9.8 66 183-254 50-123 (170)
284 PF13614 AAA_31: AAA domain; P 98.6 4.6E-07 1E-11 82.4 11.1 115 102-224 1-151 (157)
285 cd01882 BMS1 Bms1. Bms1 is an 98.6 4.2E-07 9.2E-12 88.7 11.5 109 98-254 36-147 (225)
286 PF00025 Arf: ADP-ribosylation 98.6 3.1E-07 6.7E-12 85.9 9.9 152 100-310 13-174 (175)
287 PF02374 ArsA_ATPase: Anion-tr 98.6 1.7E-07 3.7E-12 95.7 8.5 40 102-141 2-41 (305)
288 cd04111 Rab39 Rab39 subfamily. 98.6 3.9E-07 8.5E-12 87.9 10.6 155 102-311 3-165 (211)
289 PF02881 SRP54_N: SRP54-type p 98.6 5.7E-07 1.2E-11 72.4 9.9 75 6-83 1-75 (75)
290 cd04126 Rab20 Rab20 subfamily. 98.6 5.2E-07 1.1E-11 87.9 11.4 106 103-254 2-114 (220)
291 PTZ00141 elongation factor 1- 98.6 2.9E-07 6.2E-12 98.8 10.4 65 182-252 83-157 (446)
292 TIGR00483 EF-1_alpha translati 98.5 3E-07 6.5E-12 98.1 9.6 67 182-254 83-155 (426)
293 KOG1533 Predicted GTPase [Gene 98.5 1.7E-07 3.6E-12 90.4 6.7 150 104-257 5-180 (290)
294 PLN03110 Rab GTPase; Provision 98.5 4.2E-07 9.1E-12 88.0 9.6 154 102-311 13-173 (216)
295 TIGR02475 CobW cobalamin biosy 98.5 7.5E-07 1.6E-11 92.3 11.9 120 102-225 5-135 (341)
296 cd01850 CDC_Septin CDC/Septin. 98.5 5.8E-07 1.3E-11 90.5 10.4 150 101-275 4-184 (276)
297 PLN03108 Rab family protein; P 98.5 7.2E-07 1.6E-11 85.9 10.5 152 102-310 7-166 (210)
298 cd01885 EF2 EF2 (for archaea a 98.5 1E-06 2.2E-11 86.0 11.4 64 183-253 72-138 (222)
299 PRK04000 translation initiatio 98.5 1.9E-06 4.1E-11 91.6 14.3 111 184-313 85-202 (411)
300 cd04134 Rho3 Rho3 subfamily. 98.5 2.6E-07 5.7E-12 87.2 7.0 119 183-311 47-173 (189)
301 KOG3022 Predicted ATPase, nucl 98.5 1.1E-06 2.4E-11 86.7 11.4 43 102-144 49-91 (300)
302 COG0536 Obg Predicted GTPase [ 98.5 3.1E-07 6.7E-12 93.1 7.5 156 104-312 162-333 (369)
303 PF00350 Dynamin_N: Dynamin fa 98.5 3.2E-07 7E-12 84.3 7.2 66 183-250 100-168 (168)
304 smart00382 AAA ATPases associa 98.5 2.4E-06 5.3E-11 73.9 12.4 92 102-199 3-94 (148)
305 cd04105 SR_beta Signal recogni 98.5 8.4E-07 1.8E-11 85.2 10.0 65 183-254 47-123 (203)
306 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.5 1.1E-06 2.4E-11 81.7 10.4 106 183-311 49-163 (172)
307 PRK12740 elongation factor G; 98.5 1.7E-06 3.7E-11 97.4 13.8 66 182-254 58-126 (668)
308 cd04143 Rhes_like Rhes_like su 98.4 1.5E-06 3.3E-11 86.1 11.5 108 183-311 47-170 (247)
309 cd04117 Rab15 Rab15 subfamily. 98.4 1.7E-06 3.6E-11 79.4 10.9 104 184-310 49-160 (161)
310 PF04548 AIG1: AIG1 family; I 98.4 4.3E-07 9.4E-12 87.8 7.3 119 103-255 2-131 (212)
311 COG3596 Predicted GTPase [Gene 98.4 2.4E-06 5.1E-11 84.6 12.3 184 99-323 37-233 (296)
312 cd04120 Rab12 Rab12 subfamily. 98.4 1.5E-06 3.2E-11 83.5 10.6 107 183-311 48-162 (202)
313 cd01899 Ygr210 Ygr210 subfamil 98.4 1.8E-06 4E-11 88.6 11.9 30 285-315 242-272 (318)
314 cd04108 Rab36_Rab34 Rab34/Rab3 98.4 9.2E-07 2E-11 82.1 8.8 108 183-311 48-164 (170)
315 TIGR00347 bioD dethiobiotin sy 98.4 2.8E-06 6.1E-11 78.4 11.8 134 110-248 7-166 (166)
316 PRK09602 translation-associate 98.4 3.1E-06 6.7E-11 89.4 13.5 50 285-338 244-301 (396)
317 KOG0462 Elongation factor-type 98.4 5.5E-07 1.2E-11 95.8 7.8 172 102-313 61-236 (650)
318 cd01858 NGP_1 NGP-1. Autoanti 98.4 6.5E-07 1.4E-11 82.1 7.3 31 101-137 102-132 (157)
319 PLN03071 GTP-binding nuclear p 98.4 2.3E-06 5.1E-11 83.0 11.4 152 100-311 12-171 (219)
320 PRK13351 elongation factor G; 98.4 4.1E-06 9E-11 94.6 15.0 129 101-254 8-139 (687)
321 cd01871 Rac1_like Rac1-like su 98.4 1.4E-06 2.9E-11 81.3 9.3 117 183-309 48-172 (174)
322 PLN00043 elongation factor 1-a 98.4 9.2E-07 2E-11 94.9 9.2 66 182-253 83-158 (447)
323 cd01874 Cdc42 Cdc42 subfamily. 98.4 7.1E-07 1.5E-11 83.3 7.3 117 183-309 48-172 (175)
324 TIGR02836 spore_IV_A stage IV 98.4 1.1E-06 2.4E-11 91.7 9.2 219 101-351 17-284 (492)
325 PF09439 SRPRB: Signal recogni 98.4 9.9E-07 2.2E-11 83.2 7.9 114 101-254 3-126 (181)
326 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.4 1.2E-06 2.6E-11 85.4 8.7 164 103-310 3-174 (222)
327 PF00142 Fer4_NifH: 4Fe-4S iro 98.4 2.3E-06 5E-11 84.6 10.2 165 102-272 1-207 (273)
328 KOG0410 Predicted GTP binding 98.3 7E-06 1.5E-10 82.7 13.5 150 101-311 178-340 (410)
329 PRK14493 putative bifunctional 98.3 8.9E-07 1.9E-11 89.0 7.3 89 102-196 2-100 (274)
330 COG1618 Predicted nucleotide k 98.3 5.2E-06 1.1E-10 76.2 11.5 96 101-198 5-115 (179)
331 KOG1490 GTP-binding protein CR 98.3 2.4E-06 5.1E-11 90.2 10.3 139 100-274 167-322 (620)
332 cd04128 Spg1 Spg1p. Spg1p (se 98.3 1.9E-06 4E-11 81.2 8.6 111 183-311 48-165 (182)
333 cd04131 Rnd Rnd subfamily. Th 98.3 1.8E-06 4E-11 81.0 8.5 119 183-309 48-173 (178)
334 PLN03126 Elongation factor Tu; 98.3 3.3E-06 7.2E-11 91.2 11.5 126 101-254 81-211 (478)
335 COG1217 TypA Predicted membran 98.3 6E-06 1.3E-10 86.5 12.4 174 102-313 6-196 (603)
336 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.3 2.3E-06 4.9E-11 84.1 8.8 167 102-311 14-187 (232)
337 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.3 3.9E-06 8.5E-11 79.2 9.9 119 183-309 52-177 (182)
338 cd04121 Rab40 Rab40 subfamily. 98.3 4.2E-06 9.1E-11 79.5 9.8 154 102-311 7-166 (189)
339 cd01900 YchF YchF subfamily. 98.3 1.8E-06 4E-11 86.7 7.6 100 104-224 1-103 (274)
340 PTZ00327 eukaryotic translatio 98.3 7.3E-06 1.6E-10 88.1 12.6 113 184-313 117-234 (460)
341 cd04129 Rho2 Rho2 subfamily. 98.3 1.4E-06 3E-11 82.0 6.2 115 184-311 49-172 (187)
342 cd01875 RhoG RhoG subfamily. 98.3 4.8E-06 1E-10 78.8 9.7 119 183-311 50-176 (191)
343 COG1149 MinD superfamily P-loo 98.3 1.5E-05 3.2E-10 78.8 13.2 79 184-272 164-244 (284)
344 PF05049 IIGP: Interferon-indu 98.3 2.8E-05 6E-10 81.1 15.9 119 101-252 35-153 (376)
345 PTZ00258 GTP-binding protein; 98.2 3.2E-06 7E-11 88.8 8.9 103 101-224 21-126 (390)
346 PRK12337 2-phosphoglycerate ki 98.2 2.7E-06 5.8E-11 90.5 8.2 102 35-142 185-292 (475)
347 PRK13886 conjugal transfer pro 98.2 4.7E-05 1E-09 75.0 15.8 41 103-143 4-45 (241)
348 cd01120 RecA-like_NTPases RecA 98.2 1.4E-05 3E-10 72.0 11.3 93 103-195 1-97 (165)
349 PRK09601 GTP-binding protein Y 98.2 3.3E-06 7.1E-11 87.8 8.0 100 103-224 4-107 (364)
350 PRK04220 2-phosphoglycerate ki 98.2 4.1E-06 8.8E-11 84.9 8.4 102 35-142 22-129 (301)
351 COG4917 EutP Ethanolamine util 98.2 3.8E-06 8.2E-11 73.8 6.8 141 102-310 2-144 (148)
352 TIGR00490 aEF-2 translation el 98.2 8.9E-06 1.9E-10 92.4 11.5 65 182-253 84-151 (720)
353 COG1100 GTPase SAR1 and relate 98.2 9.1E-06 2E-10 77.8 9.9 113 102-255 6-126 (219)
354 KOG2743 Cobalamin synthesis pr 98.2 1.8E-05 4E-10 78.9 11.7 146 102-255 58-226 (391)
355 PRK06278 cobyrinic acid a,c-di 98.2 3.4E-05 7.3E-10 83.2 14.7 189 77-273 214-416 (476)
356 PTZ00132 GTP-binding nuclear p 98.2 2.9E-05 6.3E-10 74.7 12.9 105 183-311 57-167 (215)
357 COG2229 Predicted GTPase [Gene 98.1 1.9E-05 4.2E-10 73.7 10.9 120 101-255 10-136 (187)
358 PRK04296 thymidine kinase; Pro 98.1 2.7E-05 5.8E-10 74.1 12.3 87 102-196 3-91 (190)
359 PRK07560 elongation factor EF- 98.1 2.3E-05 5E-10 89.2 13.3 140 80-253 7-152 (731)
360 PRK00090 bioD dithiobiotin syn 98.1 0.0001 2.2E-09 71.5 15.7 145 104-253 2-175 (222)
361 cd04178 Nucleostemin_like Nucl 98.1 4.2E-06 9.2E-11 78.4 5.7 31 101-137 117-147 (172)
362 COG1348 NifH Nitrogenase subun 98.1 5E-05 1.1E-09 73.5 13.0 164 102-271 2-207 (278)
363 PRK01077 cobyrinic acid a,c-di 98.1 0.00012 2.6E-09 78.8 17.4 159 103-271 5-175 (451)
364 PF08477 Miro: Miro-like prote 98.1 5.1E-06 1.1E-10 71.7 5.5 20 103-122 1-20 (119)
365 COG0480 FusA Translation elong 98.1 4.9E-05 1.1E-09 85.3 14.5 218 100-343 9-249 (697)
366 PTZ00416 elongation factor 2; 98.1 7.5E-06 1.6E-10 94.3 7.8 64 183-253 91-157 (836)
367 TIGR02237 recomb_radB DNA repa 98.1 2.5E-05 5.4E-10 74.8 10.2 43 101-143 12-54 (209)
368 PRK06067 flagellar accessory p 98.1 8.7E-05 1.9E-09 72.6 14.1 39 101-139 25-63 (234)
369 smart00176 RAN Ran (Ras-relate 98.0 2.1E-05 4.5E-10 75.5 9.4 105 183-311 43-153 (200)
370 KOG1145 Mitochondrial translat 98.0 0.00015 3.3E-09 77.6 15.5 160 98-309 150-313 (683)
371 PRK09361 radB DNA repair and r 98.0 5.2E-05 1.1E-09 73.6 11.4 47 101-147 23-69 (225)
372 PLN00116 translation elongatio 98.0 2E-05 4.4E-10 90.9 9.8 64 183-253 97-163 (843)
373 PRK00889 adenylylsulfate kinas 98.0 3.5E-05 7.6E-10 71.8 9.6 43 100-142 3-45 (175)
374 cd01124 KaiC KaiC is a circadi 98.0 7.1E-05 1.5E-09 69.9 11.6 37 104-140 2-38 (187)
375 PF00071 Ras: Ras family; Int 98.0 2.9E-05 6.4E-10 70.4 8.7 152 103-310 1-159 (162)
376 cd04133 Rop_like Rop subfamily 98.0 2.6E-05 5.7E-10 73.2 8.4 118 183-311 48-172 (176)
377 PRK08533 flagellar accessory p 98.0 0.00012 2.5E-09 71.9 13.1 48 102-149 25-72 (230)
378 cd01851 GBP Guanylate-binding 98.0 4.9E-05 1.1E-09 74.2 10.4 99 100-231 6-109 (224)
379 TIGR03878 thermo_KaiC_2 KaiC d 98.0 0.00011 2.4E-09 73.3 13.0 57 101-157 36-92 (259)
380 COG5256 TEF1 Translation elong 97.9 2E-05 4.4E-10 81.9 7.7 136 102-255 8-160 (428)
381 TIGR03574 selen_PSTK L-seryl-t 97.9 3.2E-05 6.9E-10 76.5 8.9 39 104-142 2-40 (249)
382 PF13671 AAA_33: AAA domain; P 97.9 1.2E-05 2.7E-10 71.7 5.4 35 103-142 1-35 (143)
383 cd01855 YqeH YqeH. YqeH is an 97.9 1.3E-05 2.8E-10 75.7 5.7 22 102-123 128-149 (190)
384 cd03109 DTBS Dethiobiotin synt 97.9 0.00013 2.9E-09 65.4 11.7 102 105-253 4-110 (134)
385 PF13401 AAA_22: AAA domain; P 97.9 4.5E-05 9.7E-10 66.9 8.5 102 101-207 4-110 (131)
386 cd01394 radB RadB. The archaea 97.9 9.1E-05 2E-09 71.4 11.5 39 101-139 19-57 (218)
387 KOG1534 Putative transcription 97.9 6.1E-05 1.3E-09 71.9 9.7 37 103-139 5-41 (273)
388 PRK06762 hypothetical protein; 97.9 9.7E-05 2.1E-09 68.1 10.9 39 101-142 2-40 (166)
389 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 2E-05 4.3E-10 71.1 6.0 29 103-137 85-113 (141)
390 cd01849 YlqF_related_GTPase Yl 97.9 1.8E-05 3.8E-10 72.5 5.6 31 101-137 100-130 (155)
391 cd02027 APSK Adenosine 5'-phos 97.9 6E-05 1.3E-09 68.8 8.9 40 103-142 1-40 (149)
392 PRK06526 transposase; Provisio 97.9 2E-05 4.3E-10 78.5 6.1 78 102-200 99-176 (254)
393 cd04103 Centaurin_gamma Centau 97.9 4.8E-05 1E-09 69.9 8.2 101 184-309 47-156 (158)
394 PRK05541 adenylylsulfate kinas 97.9 0.00018 3.9E-09 67.1 11.8 42 100-141 6-47 (176)
395 PRK09563 rbgA GTPase YlqF; Rev 97.9 1.8E-05 3.9E-10 80.1 5.4 31 101-137 121-151 (287)
396 cd01122 GP4d_helicase GP4d_hel 97.8 0.00024 5.3E-09 70.8 13.4 117 101-223 30-148 (271)
397 PRK04328 hypothetical protein; 97.8 0.00047 1E-08 68.4 15.3 39 101-139 23-61 (249)
398 TIGR03596 GTPase_YlqF ribosome 97.8 2.4E-05 5.3E-10 78.7 6.1 31 101-137 118-148 (276)
399 PF13500 AAA_26: AAA domain; P 97.8 0.00036 7.7E-09 66.5 13.7 161 103-271 2-186 (199)
400 PHA02542 41 41 helicase; Provi 97.8 0.0012 2.6E-08 71.4 19.1 41 102-142 191-231 (473)
401 cd01121 Sms Sms (bacterial rad 97.8 0.00025 5.4E-09 74.4 13.4 98 81-193 69-168 (372)
402 TIGR00313 cobQ cobyric acid sy 97.8 0.00027 5.9E-09 76.5 14.1 34 104-137 1-35 (475)
403 COG0532 InfB Translation initi 97.8 0.00013 2.8E-09 78.3 10.9 161 99-309 3-167 (509)
404 cd00984 DnaB_C DnaB helicase C 97.8 0.00092 2E-08 65.3 16.3 144 101-252 13-174 (242)
405 PF03193 DUF258: Protein of un 97.8 1.4E-05 3.1E-10 74.0 3.2 21 102-122 36-56 (161)
406 PF08433 KTI12: Chromatin asso 97.8 0.00013 2.9E-09 73.2 10.5 106 103-224 3-108 (270)
407 PF03205 MobB: Molybdopterin g 97.8 3.7E-05 8.1E-10 69.7 5.8 37 103-139 2-39 (140)
408 PRK06696 uridine kinase; Valid 97.8 6.9E-05 1.5E-09 72.9 8.1 44 100-143 21-64 (223)
409 COG1161 Predicted GTPases [Gen 97.8 2.9E-05 6.3E-10 80.0 5.7 31 101-137 132-162 (322)
410 PF06414 Zeta_toxin: Zeta toxi 97.8 9.5E-05 2.1E-09 70.6 8.9 92 98-196 12-105 (199)
411 TIGR02012 tigrfam_recA protein 97.8 0.00021 4.6E-09 73.4 11.9 88 101-194 55-144 (321)
412 cd01131 PilT Pilus retraction 97.8 0.00032 7E-09 67.1 12.4 81 102-193 2-84 (198)
413 COG0481 LepA Membrane GTPase L 97.8 3.3E-05 7.2E-10 81.3 5.9 109 183-313 75-187 (603)
414 COG5019 CDC3 Septin family pro 97.8 0.00013 2.8E-09 75.0 10.1 147 98-272 20-200 (373)
415 PF13604 AAA_30: AAA domain; P 97.8 0.00019 4.1E-09 68.6 10.6 106 102-224 19-131 (196)
416 TIGR02655 circ_KaiC circadian 97.8 0.00016 3.4E-09 78.6 11.2 54 101-158 263-316 (484)
417 PF06745 KaiC: KaiC; InterPro 97.7 0.00012 2.5E-09 71.2 8.9 39 101-139 19-58 (226)
418 COG2805 PilT Tfp pilus assembl 97.7 8.2E-05 1.8E-09 74.7 7.8 79 101-190 125-205 (353)
419 PF01583 APS_kinase: Adenylyls 97.7 3.4E-05 7.5E-10 71.1 4.9 43 101-143 2-44 (156)
420 COG4108 PrfC Peptide chain rel 97.7 0.00011 2.3E-09 77.0 8.8 133 101-256 12-149 (528)
421 PRK14494 putative molybdopteri 97.7 6.3E-05 1.4E-09 73.6 6.7 36 102-137 2-37 (229)
422 PRK07667 uridine kinase; Provi 97.7 6.1E-05 1.3E-09 71.7 6.2 40 101-140 17-56 (193)
423 cd01873 RhoBTB RhoBTB subfamil 97.7 0.00019 4.1E-09 68.5 9.5 115 183-309 65-193 (195)
424 PF00735 Septin: Septin; Inte 97.7 0.00011 2.3E-09 74.4 8.0 41 214-255 114-157 (281)
425 TIGR00176 mobB molybdopterin-g 97.7 4.6E-05 1E-09 70.2 5.0 37 103-139 1-37 (155)
426 TIGR03881 KaiC_arch_4 KaiC dom 97.7 0.00082 1.8E-08 65.3 13.9 39 101-139 20-58 (229)
427 KOG0094 GTPase Rab6/YPT6/Ryh1, 97.7 0.00015 3.2E-09 68.5 8.1 158 102-315 23-188 (221)
428 COG4240 Predicted kinase [Gene 97.7 0.00024 5.1E-09 68.8 9.6 44 97-140 46-90 (300)
429 TIGR03877 thermo_KaiC_1 KaiC d 97.7 0.00043 9.3E-09 68.0 11.9 39 101-139 21-59 (237)
430 PRK07952 DNA replication prote 97.7 0.00018 3.8E-09 71.3 9.1 35 103-137 101-135 (244)
431 COG0529 CysC Adenylylsulfate k 97.7 5.4E-05 1.2E-09 70.6 5.0 45 99-143 21-65 (197)
432 TIGR03600 phage_DnaB phage rep 97.7 0.016 3.5E-07 61.8 24.4 117 101-224 194-314 (421)
433 TIGR00041 DTMP_kinase thymidyl 97.7 0.00045 9.8E-09 65.2 11.2 36 102-137 4-39 (195)
434 PRK12289 GTPase RsgA; Reviewed 97.6 5E-05 1.1E-09 79.1 4.9 21 102-122 173-193 (352)
435 TIGR00416 sms DNA repair prote 97.6 0.00064 1.4E-08 73.3 13.4 98 81-193 81-180 (454)
436 PRK11823 DNA repair protein Ra 97.6 0.00072 1.6E-08 72.8 13.5 98 81-193 67-166 (446)
437 PRK08233 hypothetical protein; 97.6 0.00012 2.6E-09 68.1 6.7 37 101-141 3-39 (182)
438 cd00009 AAA The AAA+ (ATPases 97.6 0.00094 2E-08 58.2 12.0 41 102-142 20-60 (151)
439 PRK08760 replicative DNA helic 97.6 0.0035 7.6E-08 68.0 18.7 115 101-223 229-347 (476)
440 KOG2749 mRNA cleavage and poly 97.6 0.00077 1.7E-08 69.0 12.6 154 103-261 105-285 (415)
441 cd02029 PRK_like Phosphoribulo 97.6 0.0002 4.3E-09 71.6 8.2 43 103-145 1-43 (277)
442 cd02028 UMPK_like Uridine mono 97.6 6.6E-05 1.4E-09 70.7 4.7 39 103-141 1-39 (179)
443 PRK05632 phosphate acetyltrans 97.6 0.001 2.2E-08 75.3 15.0 141 103-253 4-155 (684)
444 cd00983 recA RecA is a bacter 97.6 0.00058 1.2E-08 70.3 11.8 38 101-138 55-92 (325)
445 PRK15453 phosphoribulokinase; 97.6 0.00027 5.9E-09 71.0 9.2 49 100-148 4-52 (290)
446 COG2019 AdkA Archaeal adenylat 97.6 0.00017 3.6E-09 66.8 6.9 110 101-222 4-118 (189)
447 PRK05439 pantothenate kinase; 97.6 0.00018 3.9E-09 73.6 8.0 43 98-140 83-127 (311)
448 PF13245 AAA_19: Part of AAA d 97.6 0.00015 3.2E-09 58.8 5.9 45 102-149 11-59 (76)
449 cd01393 recA_like RecA is a b 97.6 0.00045 9.7E-09 66.8 10.4 38 101-138 19-62 (226)
450 TIGR00665 DnaB replicative DNA 97.6 0.0096 2.1E-07 63.7 21.5 115 101-223 195-313 (434)
451 PF13481 AAA_25: AAA domain; P 97.6 0.00021 4.7E-09 67.2 7.9 45 102-146 33-87 (193)
452 PRK04040 adenylate kinase; Pro 97.6 9.2E-05 2E-09 70.4 5.2 36 101-139 2-37 (188)
453 PRK12288 GTPase RsgA; Reviewed 97.6 7E-05 1.5E-09 77.9 4.6 27 103-135 207-233 (347)
454 cd02021 GntK Gluconate kinase 97.6 0.00055 1.2E-08 61.9 9.9 36 103-143 1-36 (150)
455 cd03116 MobB Molybdenum is an 97.6 0.00013 2.8E-09 67.6 5.9 39 102-140 2-40 (159)
456 PRK09270 nucleoside triphospha 97.6 0.00014 3E-09 71.1 6.4 43 99-141 31-74 (229)
457 PHA00729 NTP-binding motif con 97.6 0.00058 1.3E-08 66.7 10.5 24 103-126 19-42 (226)
458 COG1066 Sms Predicted ATP-depe 97.5 0.00045 9.7E-09 72.2 10.2 98 78-191 77-176 (456)
459 PRK13796 GTPase YqeH; Provisio 97.5 0.00021 4.4E-09 75.0 7.8 23 102-124 161-183 (365)
460 PLN02796 D-glycerate 3-kinase 97.5 0.0004 8.7E-09 71.8 9.7 42 100-141 99-140 (347)
461 cd01856 YlqF YlqF. Proteins o 97.5 0.00018 3.9E-09 66.9 6.4 30 101-136 115-144 (171)
462 PRK10751 molybdopterin-guanine 97.5 0.00015 3.3E-09 68.0 5.9 39 100-138 5-43 (173)
463 COG1763 MobB Molybdopterin-gua 97.5 0.00011 2.3E-09 68.1 4.7 38 101-138 2-39 (161)
464 PRK05973 replicative DNA helic 97.5 0.00079 1.7E-08 66.4 11.0 40 101-140 64-103 (237)
465 cd04102 RabL3 RabL3 (Rab-like3 97.5 0.00085 1.8E-08 64.5 11.0 20 103-122 2-21 (202)
466 PRK05480 uridine/cytidine kina 97.5 0.00015 3.2E-09 69.6 5.8 40 100-141 5-44 (209)
467 PRK00411 cdc6 cell division co 97.5 0.014 3.1E-07 61.2 21.3 40 101-140 55-96 (394)
468 KOG2825 Putative arsenite-tran 97.5 0.00015 3.1E-09 71.1 5.5 40 102-141 20-59 (323)
469 PRK06893 DNA replication initi 97.5 0.00024 5.1E-09 69.6 7.1 35 103-137 41-75 (229)
470 PF03266 NTPase_1: NTPase; In 97.5 0.00016 3.6E-09 67.5 5.7 30 104-133 2-31 (168)
471 TIGR03575 selen_PSTK_euk L-ser 97.5 0.0014 3.1E-08 67.9 13.0 38 104-141 2-40 (340)
472 PF13207 AAA_17: AAA domain; P 97.5 0.00013 2.8E-09 63.3 4.5 32 103-139 1-32 (121)
473 PRK05595 replicative DNA helic 97.5 0.013 2.8E-07 63.0 20.9 115 101-223 201-319 (444)
474 TIGR00157 ribosome small subun 97.5 0.00011 2.4E-09 72.8 4.6 21 102-122 121-141 (245)
475 TIGR03880 KaiC_arch_3 KaiC dom 97.5 0.00092 2E-08 64.8 10.9 53 101-157 16-68 (224)
476 cd02025 PanK Pantothenate kina 97.5 0.00014 3.1E-09 70.8 5.0 39 103-141 1-41 (220)
477 PRK12374 putative dithiobiotin 97.5 0.0048 1E-07 60.4 15.7 146 103-253 4-177 (231)
478 COG0050 TufB GTPases - transla 97.4 0.00092 2E-08 67.0 10.4 128 102-255 13-143 (394)
479 PF00485 PRK: Phosphoribulokin 97.4 0.00017 3.7E-09 68.5 5.2 39 103-141 1-43 (194)
480 TIGR00379 cobB cobyrinic acid 97.4 0.0029 6.2E-08 68.2 15.2 138 104-253 2-153 (449)
481 PRK14489 putative bifunctional 97.4 0.00036 7.8E-09 73.2 8.1 41 100-140 204-244 (366)
482 TIGR00455 apsK adenylylsulfate 97.4 0.00091 2E-08 62.8 10.0 43 100-142 17-59 (184)
483 cd01123 Rad51_DMC1_radA Rad51_ 97.4 0.00072 1.6E-08 65.8 9.4 39 101-139 19-63 (235)
484 COG1162 Predicted GTPases [Gen 97.4 0.00015 3.3E-09 73.2 4.7 23 101-123 164-186 (301)
485 TIGR01420 pilT_fam pilus retra 97.4 0.0019 4.1E-08 67.2 12.9 112 101-229 122-235 (343)
486 cd02019 NK Nucleoside/nucleoti 97.4 0.00023 5E-09 56.3 4.6 33 103-137 1-33 (69)
487 cd01859 MJ1464 MJ1464. This f 97.4 0.00044 9.6E-09 63.0 7.2 38 77-122 85-122 (156)
488 PRK08506 replicative DNA helic 97.4 0.021 4.5E-07 62.0 21.3 117 101-224 192-311 (472)
489 PRK13695 putative NTPase; Prov 97.4 0.0064 1.4E-07 56.6 15.2 31 103-133 2-32 (174)
490 TIGR02238 recomb_DMC1 meiotic 97.4 0.0019 4.2E-08 66.3 12.6 44 101-144 96-146 (313)
491 PRK08181 transposase; Validate 97.4 0.00033 7.2E-09 70.3 6.8 77 103-200 108-184 (269)
492 KOG2485 Conserved ATP/GTP bind 97.4 0.00055 1.2E-08 69.1 8.1 58 71-137 121-178 (335)
493 PRK05748 replicative DNA helic 97.4 0.023 5E-07 61.2 21.2 117 101-224 203-323 (448)
494 PF00004 AAA: ATPase family as 97.4 0.00065 1.4E-08 59.2 7.7 68 104-194 1-69 (132)
495 PRK08727 hypothetical protein; 97.4 0.0015 3.3E-08 64.0 11.0 35 103-137 43-77 (233)
496 PTZ00035 Rad51 protein; Provis 97.4 0.0014 3.1E-08 67.9 11.4 48 101-148 118-172 (337)
497 PF01695 IstB_IS21: IstB-like 97.4 0.00041 8.9E-09 65.4 6.7 78 102-200 48-125 (178)
498 cd02023 UMPK Uridine monophosp 97.4 0.00021 4.5E-09 68.0 4.7 37 103-141 1-37 (198)
499 PHA02530 pseT polynucleotide k 97.4 0.00073 1.6E-08 68.3 8.9 38 101-142 2-39 (300)
500 PRK06835 DNA replication prote 97.4 0.00074 1.6E-08 69.8 9.0 90 102-210 184-273 (329)
No 1
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.9e-117 Score=905.84 Aligned_cols=430 Identities=41% Similarity=0.662 Sum_probs=414.8
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHH
Q 011076 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFN 81 (494)
Q Consensus 2 ~~~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~ 81 (494)
||++|+++|++++++|+|++++||++|+++++|||++||+||||+++|++|+++|++++.+++++++++|+++++++|++
T Consensus 1 m~e~L~~~l~~~l~kl~g~~~i~E~~i~e~~reir~ALLeADVnl~vVk~fi~~ikera~g~ev~~~l~p~q~~iKiV~e 80 (451)
T COG0541 1 MFESLSDRLSNALKKLRGKGRITEKDVKEALREIRRALLEADVNLKVVKDFIKRIKERALGEEVPKGLTPGQQFIKIVYE 80 (451)
T ss_pred ChHHHHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceec
Q 011076 82 ELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161 (494)
Q Consensus 82 eL~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~ 161 (494)
||+++|+....++.+...+|.+|++||+|||||||||+|||+||+++|+||++|+||+|||||++||++++.+.++|||+
T Consensus 81 ELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~ 160 (451)
T COG0541 81 ELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFG 160 (451)
T ss_pred HHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceec
Confidence 99999998667777767789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhccCC
Q 011076 162 SYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVS 241 (494)
Q Consensus 162 ~~~~~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~~ 241 (494)
..++.+|++++++++++++.++|||||||||||++.++++++|+..+..+++||+++||+||++||++.+++++|++.++
T Consensus 161 ~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~ 240 (451)
T COG0541 161 SGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALG 240 (451)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcC
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCCCCCchHHHh
Q 011076 242 VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQ 321 (494)
Q Consensus 242 i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~~~~~~~~~ 321 (494)
+++||+||+|+++++|++||+.+.||+||+|+|+||++++|++|+|++|+||++|+||+.+|+|++++.+++++++++.+
T Consensus 241 itGvIlTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILGMGDv~sLvEk~~~~~d~e~a~~~~~ 320 (451)
T COG0541 241 ITGVILTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILGMGDVLSLIEKAEEVVDEEEAEKLAE 320 (451)
T ss_pred CceEEEEcccCCCcchHHHhhHHHHCCCeEEEecCCCcccCCCcChHHHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred hhhcchhhHHHHHHHHHHHhccCChhHHhhcCCCCCCccCcchhhhhhHHhHHhHhHhhcCCCHHhhcCCCCCCcchHHH
Q 011076 322 KLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRI 401 (494)
Q Consensus 322 ~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~i~~sr~ 401 (494)
++.+|+|||+||++|+++|+||||+++|++||||++ ...+....+.++++++||+|||+|||++||+|| .+|++||+
T Consensus 321 kl~~g~FtL~Df~~Ql~~m~kmGpl~~ll~miPG~~-~~~~~~~~~~~e~~~kr~~aIi~SMT~~Er~nP--~ii~~SR~ 397 (451)
T COG0541 321 KLKKGKFTLEDFLEQLEQMKKMGPLSKLLSMIPGMG-MKDSDKDIELDEKKLKRIEAIIDSMTPEERENP--DIINASRK 397 (451)
T ss_pred HHHhCCCCHHHHHHHHHHHHccCCHHHHHHhCCCCC-CCCchhhhhccHHHHHHHHHHHHcCCHHHhhCc--cccChHHH
Confidence 999999999999999999999999999999999997 222222234578999999999999999999996 88999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 011076 402 MRIARGSGRQVREVMEMLEEYKRLAKIWSKMKG 434 (494)
Q Consensus 402 ~rIa~gsg~~~~~v~~ll~~~~~~~~~~~~~~~ 434 (494)
+|||+||||+++|||+||+||++|++|||+|++
T Consensus 398 rRIA~GSG~sv~dVn~Llkq~~~m~~mmk~m~~ 430 (451)
T COG0541 398 RRIARGSGTSVQDVNKLLKQFKQMKKMMKKMSG 430 (451)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999987
No 2
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.2e-112 Score=846.66 Aligned_cols=483 Identities=67% Similarity=1.014 Sum_probs=450.9
Q ss_pred ChhHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHH
Q 011076 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIF 80 (494)
Q Consensus 1 m~~~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~ 80 (494)
|+|+.|+.+|++++++++..+.+++..++.+|+||++|||++||++.+|.+|.+++++.+...++..++|+++.++++|+
T Consensus 1 mvla~lGrrI~~a~~~~s~~t~~~~~~l~~~L~eI~~ALLesDV~~~lV~~l~~nir~~i~~~~~~~G~nk~r~i~~~vf 80 (483)
T KOG0780|consen 1 MVLAELGRRITSAFSRMSNATSIDETALNTMLKEICRALLESDVNPRLVKELRENIRKIINLEKLASGVNKRRIIQKAVF 80 (483)
T ss_pred CchHHhchhHHHHHHHhccCCcchHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhchhhhccccCHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCccee
Q 011076 81 NELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160 (494)
Q Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~ 160 (494)
+||+.++++...+|.+.+++|.||+|||++|+||||+|.|||+||+++|||+++||+|+||++|+|||++++++.+||||
T Consensus 81 ~eL~kl~dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~y 160 (483)
T KOG0780|consen 81 DELVKLLDPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFY 160 (483)
T ss_pred HHHHHHhCCCCcccccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhccC
Q 011076 161 GSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240 (494)
Q Consensus 161 ~~~~~~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~ 240 (494)
++|++.||+.++.+++..|++++||+|||||+|||+.+..+++||.++..++.||+++||+||++||.+..++++|++.+
T Consensus 161 gsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~v 240 (483)
T KOG0780|consen 161 GSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETV 240 (483)
T ss_pred ecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCCCCCchHHH
Q 011076 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELL 320 (494)
Q Consensus 241 ~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~~~~~~~~ 320 (494)
.++++|+||+|+++++|+++|++++|+.||+|||+||+++||++|+|..|+|+++|+||+++|+|++++.. .++++++.
T Consensus 241 dvg~vIlTKlDGhakGGgAlSaVaaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLGmGDi~glvek~~ev~-~~d~~el~ 319 (483)
T KOG0780|consen 241 DVGAVILTKLDGHAKGGGALSAVAATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLGMGDIEGLVEKVQEVG-KDDAKELV 319 (483)
T ss_pred ccceEEEEecccCCCCCceeeehhhhCCCEEEEecCccccccCCCChHHHHHHHhccccHHHHHHHHHHHh-hhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 67789999
Q ss_pred hhhhcchhhHHHHHHHHHHHhccCChhHHhhcCCCCCCccCcchhhhhhHHhHHhHhHhhcCCCHHhhcCCCCCCcchHH
Q 011076 321 QKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSR 400 (494)
Q Consensus 321 ~~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~i~~sr 400 (494)
+++.+|+||++|||+|++.|.||||++++++||||++ .++..+++++..+++|++++|+|||++|+|+|++.+-++||
T Consensus 320 ~kl~~gkFtlrd~y~Qfq~imkmGp~s~v~~MiPG~s--~m~~~~e~Es~~~~krm~~mmDsMt~~Elds~~~f~~~p~R 397 (483)
T KOG0780|consen 320 EKLKQGKFTLRDFYDQFQNIMKMGPLSQVLGMIPGMS--MMSKGNEEESSAKLKRMMTMMDSMTDEELDSPELFVEEPSR 397 (483)
T ss_pred HHHHhCCccHHHHHHHHHHHHhhCCHHHHHhhCCCcc--cCCCcchhHHHHHHHHHHHHHHhcChhhccCccccccCchH
Confidence 9999999999999999999999999999999999998 45677788889999999999999999999999766669999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhhhcchhHHHhhhcCChhHHHhcCCcccHHHHHHHc
Q 011076 401 IMRIARGSGRQVREVMEMLEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPQGMLKQIGGVGGLQNLMKQM 480 (494)
Q Consensus 401 ~~rIa~gsg~~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (494)
+.|||+|||++++||.+||.||++|+.|||+++..+ |.+..+ .||. ++.+..||.++++.+++-+.+.+|++|
T Consensus 398 ~~RvArgSG~~v~eV~ell~q~~~~~~~~kk~~~~~----G~~~~l-g~~~--~~~~~~~~~~l~q~~~~~~~~~~~~~m 470 (483)
T KOG0780|consen 398 IMRVARGSGTSVQEVMELLAQYKKFAAMMKKIGGIK----GIFGAL-GNPN--KNMNPAPMAKLKQQMAKMGPQRLLQQM 470 (483)
T ss_pred hhhhhccCCccHHHHHHHHHHHHHHHHHHHHhcCCC----Cccccc-CCcc--cccCcCChHHHHHHHHhcccHHHHHHh
Confidence 999999999999999999999999999999998532 111111 3333 334455666777766777777777777
Q ss_pred CCchhhcccCCCCC
Q 011076 481 GSTKDMMGMFGGGE 494 (494)
Q Consensus 481 ~~~~~~~~~~~~~~ 494 (494)
+. ..||++||||.
T Consensus 471 g~-k~mm~~fg~g~ 483 (483)
T KOG0780|consen 471 GS-KNMMRMFGGGN 483 (483)
T ss_pred cc-chhhHhhcCCC
Confidence 64 56788888763
No 3
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=100.00 E-value=2.3e-98 Score=782.43 Aligned_cols=427 Identities=68% Similarity=1.089 Sum_probs=405.5
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHH
Q 011076 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFN 81 (494)
Q Consensus 2 ~~~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~ 81 (494)
||++|+++|++++++|+|+++|||+++++.+++|+.+|+++||+++++++|++++++.+.++++..+++|.++++++|++
T Consensus 1 ~l~~L~~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLleaDV~~~vv~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~ 80 (429)
T TIGR01425 1 VLADLGSSITSALRSMSNATVIDEEVLNAMLKEICTALLESDVNIKLVRQLRENIKKAINLEEMASGLNKRKMIQHAVFK 80 (429)
T ss_pred ChhHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred HHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceec
Q 011076 82 ELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161 (494)
Q Consensus 82 eL~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~ 161 (494)
+|++++++...++.+..++|.+|+|+|+||||||||+++||.+|+++|++|++|++|+||++|++||+.++++.++|++.
T Consensus 81 ~L~~~l~~~~~~~~~~~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~ 160 (429)
T TIGR01425 81 ELCNLVDPGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYG 160 (429)
T ss_pred HHHHHhCCCCccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEe
Confidence 99999998777787777778999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCChHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhccCC
Q 011076 162 SYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVS 241 (494)
Q Consensus 162 ~~~~~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~~ 241 (494)
..+..+|+.++.+++++++..+||+|||||||+++.+..+++|+..+..+..|++++||+|++.|+++.++++.|++.++
T Consensus 161 ~~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~ 240 (429)
T TIGR01425 161 SYTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVD 240 (429)
T ss_pred ecCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccC
Confidence 88888999999999999988899999999999999999999999999999999999999999999999999999999899
Q ss_pred eeEEEEeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCCCCCchHHHh
Q 011076 242 VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQ 321 (494)
Q Consensus 242 i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~~~~~~~~~ 321 (494)
++++|+||+|+++++|+++++...+++||.|+|+||+++|+++|+|++++++++|+||+.+|+|++++.+++++++++.+
T Consensus 241 ~~g~IlTKlD~~argG~aLs~~~~t~~PI~fig~Ge~v~Dle~f~p~~~~~rilgmgDi~~L~ek~~~~~~~~~~~~~~~ 320 (429)
T TIGR01425 241 VGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEIFKTQPFISKLLGMGDIEGLIDKVQDLKLDDNEKALIE 320 (429)
T ss_pred CcEEEEECccCCCCccHHhhhHHHHCCCeEEEcCCCChhhcCcCChHHHHHHHhcCCCcHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877889999
Q ss_pred hhhcchhhHHHHHHHHHHHhccCChhHHhhcCCCCCCccCcchhhhhhHHhHHhHhHhhcCCCHHhhcCCCCCCc--chH
Q 011076 322 KLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLM--NDS 399 (494)
Q Consensus 322 ~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~i--~~s 399 (494)
++.+|+|||+||++|+++|+||||+++||+||||++..+.+....+.++++++||+|||+|||++||++|+|.+| ++|
T Consensus 321 k~~~~~f~l~D~~~q~~~i~kmG~~~~i~~m~Pg~~~~~~~~~~~~~~~~~~~~~~aii~SMT~~Er~~~~p~i~~~~~s 400 (429)
T TIGR01425 321 KLKEGTFTLRDMYEQFQNLLKMGPLGQILSMIPGFSTDFMSKGNEEESMAKIKKLMTIMDSMTDQELDSTDGKVFSKQPS 400 (429)
T ss_pred HHHhCCCCHHHHHHHHHHHHhccCHHHHHHhCcCcchhhhhhhcccccHHHHHhHHHHHhcCCHHHHccCCCccccCCcc
Confidence 999999999999999999999999999999999987212122223457889999999999999999999777899 899
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 011076 400 RIMRIARGSGRQVREVMEMLEEYKRLAKI 428 (494)
Q Consensus 400 r~~rIa~gsg~~~~~v~~ll~~~~~~~~~ 428 (494)
|++|||+||||+++|||+||+||++|++|
T Consensus 401 R~~RIa~GSG~~~~~V~~ll~~~~~~~~~ 429 (429)
T TIGR01425 401 RIQRVARGSGRSIRDVQELLEQYKKFAQM 429 (429)
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999875
No 4
>PRK10867 signal recognition particle protein; Provisional
Probab=100.00 E-value=6.4e-95 Score=760.76 Aligned_cols=426 Identities=36% Similarity=0.594 Sum_probs=405.8
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHH
Q 011076 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFN 81 (494)
Q Consensus 2 ~~~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~ 81 (494)
||++|+++|++++++|++++++||+++++.+++|+.+|+++||+++++++|++++++++.++++..+++|.++++++|++
T Consensus 1 mf~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (433)
T PRK10867 1 MFESLSDRLSSAFKKLRGKGRLTEADIKEALREVRLALLEADVNLPVVKDFIARVKEKAVGQEVLKSLTPGQQVIKIVND 80 (433)
T ss_pred ChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999888888899999999999999
Q ss_pred HHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhc-CCceEEEEcccCcchhHHHHHhhhhccCccee
Q 011076 82 ELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160 (494)
Q Consensus 82 eL~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~-g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~ 160 (494)
+|.+++++...++.+..++|.+|+++|++||||||++.+||.+|+++ |++|++|++|+||++|++||+.++++.++|++
T Consensus 81 el~~~l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~ 160 (433)
T PRK10867 81 ELVEILGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVF 160 (433)
T ss_pred HHHHHhCCCcceeeecCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEE
Confidence 99999987666676666778999999999999999999999999998 99999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhccC
Q 011076 161 GSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240 (494)
Q Consensus 161 ~~~~~~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~ 240 (494)
......+|..++.+++..++..+||+|||||||+++.++.++.++..+...+.|+++++|+|++.++++.++++.|++.+
T Consensus 161 ~~~~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~~~~ 240 (433)
T PRK10867 161 PSGDGQDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFNEAL 240 (433)
T ss_pred ecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHHhhC
Confidence 87777899999999999998889999999999999999999999999999999999999999999999999999999989
Q ss_pred CeeEEEEeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCCCCCchHHH
Q 011076 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELL 320 (494)
Q Consensus 241 ~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~~~~~~~~ 320 (494)
+++++|+||+|+++++|.++++...+++||.|+++||+++||++|+|++++++++|+||+.+|+|++++.+++++++++.
T Consensus 241 ~i~giIlTKlD~~~rgG~alsi~~~~~~PI~fig~Ge~v~DLe~f~p~~~~~~ilgmgD~~~l~e~~~~~~~~~~~~~~~ 320 (433)
T PRK10867 241 GLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEVVDEEKAEKLA 320 (433)
T ss_pred CCCEEEEeCccCcccccHHHHHHHHHCcCEEEEeCCCccccCccCCHHHHHHHHhCCCChHHHHHHHHHhhCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred hhhhcchhhHHHHHHHHHHHhccCChhHHhhcCCCCCCccCcchhhhhhHHhHHhHhHhhcCCCHHhhcCCCCCCcchHH
Q 011076 321 QKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSR 400 (494)
Q Consensus 321 ~~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~i~~sr 400 (494)
+++.+|+||++||++|+++|+||||+++||+||||++ .+.+ +.++++++||+|||+|||++||++| .+|++||
T Consensus 321 ~~~~~g~f~l~d~~~q~~~~~kmG~~~~~~~m~Pg~~-~~~~----~~~~~~~~~~~~ii~SMt~~Er~~p--~~~~~sR 393 (433)
T PRK10867 321 KKLKKGKFDLEDFLEQLQQMKKMGGLGSLLGMLPGMG-NMKA----QLDDKELKRIEAIINSMTPKERANP--DILNGSR 393 (433)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHhCCCcc-cccc----cccHHHHHHHHHHHHcCCHHHHhCc--cccchHH
Confidence 9999999999999999999999999999999999997 4422 3466899999999999999999997 7889999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 011076 401 IMRIARGSGRQVREVMEMLEEYKRLAKIWSKMKG 434 (494)
Q Consensus 401 ~~rIa~gsg~~~~~v~~ll~~~~~~~~~~~~~~~ 434 (494)
++|||+||||+++|||+||+||++|++|||+|++
T Consensus 394 ~~RIa~GsG~~~~~v~~ll~~~~~~~~~~~~~~~ 427 (433)
T PRK10867 394 KRRIAKGSGTTVQEVNRLLKQFEQMKKMMKKMKG 427 (433)
T ss_pred HHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999976
No 5
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=100.00 E-value=9e-93 Score=746.02 Aligned_cols=423 Identities=47% Similarity=0.764 Sum_probs=396.9
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHHHh
Q 011076 6 LGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCK 85 (494)
Q Consensus 6 l~~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL~~ 85 (494)
|+++|++++++|+++++|||+++++.+++|+.+|+++||+++++.+|++++++++.++++..++++.+.++++|+++|.+
T Consensus 1 l~~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLl~adV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ 80 (437)
T PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80 (437)
T ss_pred CchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999988888889999999999999999999
Q ss_pred hcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCC
Q 011076 86 MLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE 165 (494)
Q Consensus 86 ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~ 165 (494)
++++...++... .+|.+|+|+|+|||||||++.+||.+|.++|++|++|++|+||++|++||+.++.+.++|++.....
T Consensus 81 ~l~~~~~~~~~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~ 159 (437)
T PRK00771 81 LLGEETEPLVLP-LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDN 159 (437)
T ss_pred HhCCCccccccC-CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCc
Confidence 999766555443 5689999999999999999999999999999999999999999999999999999999999987677
Q ss_pred CChHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhccCCeeEE
Q 011076 166 SDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAV 245 (494)
Q Consensus 166 ~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~~i~~v 245 (494)
.+|..++.++++++.. +|+|||||||+++.++.+++|+..+.....||++++|+|++.++++.++++.|++.++++++
T Consensus 160 ~d~~~i~~~al~~~~~--~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~~~l~i~gv 237 (437)
T PRK00771 160 KDAVEIAKEGLEKFKK--ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGGI 237 (437)
T ss_pred cCHHHHHHHHHHHhhc--CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHHhcCCCCEE
Confidence 8899999999988864 59999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCCCCCchHHHhhhhc
Q 011076 246 IVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSE 325 (494)
Q Consensus 246 VltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~~~~~~~~~~~~~ 325 (494)
|+||+|+++++|++++++..+++||.|+|+||+++||++|+|++++++++|+||+.+|+|++++.+++++++++.+++.+
T Consensus 238 IlTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilgmgd~~~l~e~~~~~~~~~~~~~~~~~~~~ 317 (437)
T PRK00771 238 IITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKMMK 317 (437)
T ss_pred EEecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhCCCChHHHHHHHHHhhhHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988778899999999
Q ss_pred chhhHHHHHHHHHHHhccCChhHHhhcCCCCCCccCcchhhhhhHHhHHhHhHhhcCCCHHhhcCCCCCCcchHHHHHHH
Q 011076 326 GNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIA 405 (494)
Q Consensus 326 ~~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~i~~sr~~rIa 405 (494)
|+||++||++|+++|+||||+++|++||||++ ..++....+.++++++||+|||+|||++||++| .+|++||++|||
T Consensus 318 ~~f~l~d~~~q~~~~~kmG~~~~~~~m~pg~~-~~~~~~~~~~~~~~~~~~~~ii~SMt~~Er~~p--~~~~~sR~~Ria 394 (437)
T PRK00771 318 GKFTLKDMYKQLEAMNKMGPLKQILQMLPGLG-GKLPDEALEVTEEKLKKYKAIMDSMTEEELENP--EIINASRIRRIA 394 (437)
T ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHhCcCcc-ccchhhhhcccHHHHHHHHHHHHcCCHHHHhCc--ccccHHHHHHHH
Confidence 99999999999999999999999999999987 322222234578899999999999999999986 788999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 011076 406 RGSGRQVREVMEMLEEYKRLAKIWSKMKG 434 (494)
Q Consensus 406 ~gsg~~~~~v~~ll~~~~~~~~~~~~~~~ 434 (494)
+||||+++|||+||+||++|++|||+|++
T Consensus 395 ~GsG~~~~~v~~ll~~~~~~~~~~~~~~~ 423 (437)
T PRK00771 395 RGSGTTVEDVRELLKYYKMMKKAMKQLKK 423 (437)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999986
No 6
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=100.00 E-value=2e-92 Score=741.63 Aligned_cols=426 Identities=35% Similarity=0.598 Sum_probs=401.1
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHH
Q 011076 3 LAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNE 82 (494)
Q Consensus 3 ~~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~e 82 (494)
|++|+++|++++++|+|++++||+++++.+++|+.+|+++||+++++.+|++++++++.++++..+++|.+.++++|+++
T Consensus 1 ~~~L~~~~~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~e 80 (428)
T TIGR00959 1 FESLSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEE 80 (428)
T ss_pred CchHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999998888889999999999999999
Q ss_pred HHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHH-hcCCceEEEEcccCcchhHHHHHhhhhccCcceec
Q 011076 83 LCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQ-KKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161 (494)
Q Consensus 83 L~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~-~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~ 161 (494)
|.+++++...++.+..++|.+++++|+|||||||++.+||.+|. +.|++|++|++|+|||+|++||+.++.+.++|++.
T Consensus 81 L~~~l~~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~ 160 (428)
T TIGR00959 81 LVAILGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160 (428)
T ss_pred HHHHhCCCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEe
Confidence 99999987666666667789999999999999999999999987 57999999999999999999999999999999998
Q ss_pred cCCCCChHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhccCC
Q 011076 162 SYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVS 241 (494)
Q Consensus 162 ~~~~~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~~ 241 (494)
.....+|.+++.+++..+...+||+|||||||+++.++.++.++..+...+.|++++||+|+++++++.+++..|.+.++
T Consensus 161 ~~~~~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~~~v~ 240 (428)
T TIGR00959 161 LGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLG 240 (428)
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHHhhCC
Confidence 77778999999999999888899999999999999999999999999999999999999999999999999999998899
Q ss_pred eeEEEEeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCCCCCchHHHh
Q 011076 242 VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQ 321 (494)
Q Consensus 242 i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~~~~~~~~~ 321 (494)
++++|+||+|++.++|.++++...+++||.|+++||+++||++|+|.+++++++|+||+.+|+|++++.+++++++++.+
T Consensus 241 i~giIlTKlD~~~~~G~~lsi~~~~~~PI~fi~~Ge~i~dl~~f~p~~~~~~iLg~gD~~~l~e~~~~~~~~~~~~~~~~ 320 (428)
T TIGR00959 241 LTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLAE 320 (428)
T ss_pred CCEEEEeCccCcccccHHHHHHHHHCcCEEEEeCCCChhhCccCCHHHHHHHHhCCCChHHHHHHHHHhhCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888889999
Q ss_pred hhhcchhhHHHHHHHHHHHhccCChhHHhhcCCCCCCccCcchhh-hhhHHhHHhHhHhhcCCCHHhhcCCCCCCcchHH
Q 011076 322 KLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGRE-KESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSR 400 (494)
Q Consensus 322 ~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~~~~~~~~-~~~~~~~~~~~~ii~smt~~er~~~~~~~i~~sr 400 (494)
++.+|+|||+||++|+++|+||||+++|++||||++ ........ +.++++++||++||+|||++||++| .+|++||
T Consensus 321 ~~~~~~f~l~d~~~q~~~~~kmG~~~~~~~~~Pg~~-~~~~~~~~~~~~~~~~~~~~~ii~SMt~~Er~~p--~~~~~sR 397 (428)
T TIGR00959 321 KMKKGQFDLEDFLEQLRQIKKMGPLSSLLKMIPGMG-GVKPSLSDLELDEKQFKRIEAIISSMTPEERRNP--KILNPSR 397 (428)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHhCcCcc-ccccccccccccHHHHHHHHHHHHcCCHHHHhCc--ccccHHH
Confidence 999999999999999999999999999999999997 33222211 3467899999999999999999987 7889999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 011076 401 IMRIARGSGRQVREVMEMLEEYKRLAKIWSK 431 (494)
Q Consensus 401 ~~rIa~gsg~~~~~v~~ll~~~~~~~~~~~~ 431 (494)
++|||+||||+++|||+||+||++|++|||+
T Consensus 398 ~~RIa~GsG~~~~~v~~ll~~~~~~~~~~~~ 428 (428)
T TIGR00959 398 RKRIAAGSGTTVQDVNKLIKRFEQMKKMMKK 428 (428)
T ss_pred HHHHHccCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999974
No 7
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.1e-49 Score=394.20 Aligned_cols=271 Identities=33% Similarity=0.563 Sum_probs=244.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHh-hchhhhhcCCChHHHHHHHHHHHHHhhcCCCCC---C-CCC
Q 011076 22 IIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKI-VNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKP---S-FTP 96 (494)
Q Consensus 22 ~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~-~~~~~~~~~~~~~~~i~~~v~~eL~~ll~~~~~---~-~~~ 96 (494)
...++..++.+.++...|+++||.++++..++++++.. ....+ ....+.+...+.+.+..++.+... + ...
T Consensus 59 ~~~~~~de~~~eeLE~~Li~aDvg~e~~~~i~~~l~~~~~~~~~----~~~~~~v~~~l~~~l~~il~~~~~~~~~~~~~ 134 (340)
T COG0552 59 KIKEKLDEDLLEELEELLIEADVGVETAEEIIEELRKREGKKKK----IKDEETVKEALREALIEILRPVDKVDLPLEIP 134 (340)
T ss_pred ccccchhHHHHHHHHHHHHHccccHHHHHHHHHHHHHHhccccc----CCCHHHHHHHHHHHHHHHhcccccccchhhhc
Confidence 34566777888999999999999999999999999984 33222 223577888888899999886432 2 223
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHH
Q 011076 97 KKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGV 176 (494)
Q Consensus 97 ~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l 176 (494)
..++|.+|+|||-.|+|||||++|||+||.++|++|.++++||||+||++||+.|++|.++++.....+.||+.++.+++
T Consensus 135 ~~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi 214 (340)
T COG0552 135 KEKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAI 214 (340)
T ss_pred cCCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHH
Confidence 35679999999999999999999999999999999999999999999999999999999999988668999999999999
Q ss_pred HHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcC------CCEEEEEecCCCcccHHHHHHHHhccCCeeEEEEeCc
Q 011076 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATN------PDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKM 250 (494)
Q Consensus 177 ~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~------~d~vllVvDa~~g~~~~~~~~~f~~~~~i~~vVltK~ 250 (494)
++++.++||+||||||||++....||.||..+.+++. |+++++|+||++||+++++++.|++.++++|+|+||+
T Consensus 215 ~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l~GiIlTKl 294 (340)
T COG0552 215 QAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGLDGIILTKL 294 (340)
T ss_pred HHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCCceEEEEec
Confidence 9999999999999999999999999999999998775 5669999999999999999999999999999999999
Q ss_pred cCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccC
Q 011076 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 296 (494)
Q Consensus 251 D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G 296 (494)
|+++++|.++++.+.+++||+|+|.||.++||.+|+++.|+.++++
T Consensus 295 DgtAKGG~il~I~~~l~~PI~fiGvGE~~~DL~~Fd~~~fv~~L~~ 340 (340)
T COG0552 295 DGTAKGGIILSIAYELGIPIKFIGVGEGYDDLRPFDAEWFVDALLG 340 (340)
T ss_pred ccCCCcceeeeHHHHhCCCEEEEeCCCChhhccccCHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999988764
No 8
>PRK14974 cell division protein FtsY; Provisional
Probab=100.00 E-value=1.6e-45 Score=376.30 Aligned_cols=294 Identities=35% Similarity=0.624 Sum_probs=268.9
Q ss_pred hhHHHHHHHHHHHHHhhCC------------------------------------CCCCHHHHHHHHHHHHHHHHHcCcC
Q 011076 2 VLAQLGGSISRAIQQMSNA------------------------------------TIIDEKVLNECLNEITRALLQADVQ 45 (494)
Q Consensus 2 ~~~~l~~~l~~~~~~l~~~------------------------------------~~~~e~~i~~~l~ei~~aLl~adv~ 45 (494)
||+.|.++|++...++... ..++|+++++.+++|+.+|+++||+
T Consensus 1 ~f~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Ll~~dv~ 80 (336)
T PRK14974 1 MFDKLKEKLSKFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKDIEDLLEELELELLESDVA 80 (336)
T ss_pred CchHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccCHHHHHHhcccCHHHHHHHHHHHHHHHHHCCCC
Confidence 4888888888888776532 2389999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHHHhhcCCCCCCCC-----CCCCCCeEEEEEcCCCCcHHHHHHH
Q 011076 46 FKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFT-----PKKGKPSVIMFVGLQGSGKTTTCTK 120 (494)
Q Consensus 46 ~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL~~ll~~~~~~~~-----~~~~~~~vI~lvG~~GvGKTTl~~k 120 (494)
.+++.++++++++.+.+..+..+.++.+.+.+.|+++|.++++... .+. ...++|.+|+|+|++||||||++++
T Consensus 81 ~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~~~~~~~~~~vi~~~G~~GvGKTTtiak 159 (336)
T PRK14974 81 LEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSVGD-LFDLIEEIKSKGKPVVIVFVGVNGTGKTTTIAK 159 (336)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHHHHhCCCc-chhhhhhhhccCCCeEEEEEcCCCCCHHHHHHH
Confidence 9999999999999988777777778888899999999999998643 111 1244688999999999999999999
Q ss_pred HHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhccCCcEEEEeCCCCCchhHH
Q 011076 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAA 200 (494)
Q Consensus 121 LA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~ 200 (494)
||.+|...|++|+++++|+||+++.+||+.++.+.++|++......+|..++.++++.++..++|+|||||||+.+.+..
T Consensus 160 LA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~ 239 (336)
T PRK14974 160 LAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDAN 239 (336)
T ss_pred HHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhCCCCEEEEECCCccCCcHH
Confidence 99999999999999999999999999999999999999998888889999999999998888999999999999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhccCCeeEEEEeCccCCCCccchhHHHHhcCCCeEEeccccccc
Q 011076 201 LFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMD 280 (494)
Q Consensus 201 l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~ 280 (494)
++.+|..+.....|+.++||+|++.|+++.+++..|++.++++++|+||+|+++++|.++++...+++||.|+|+||+++
T Consensus 240 lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKlD~~~~~G~~ls~~~~~~~Pi~~i~~Gq~v~ 319 (336)
T PRK14974 240 LMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGAALSIAYVIGKPILFLGVGQGYD 319 (336)
T ss_pred HHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeeecCCCCccHHHHHHHHHCcCEEEEeCCCChh
Confidence 99999999998999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred cccccCccchhhcccC
Q 011076 281 EFEVFDVKPFVSRLLG 296 (494)
Q Consensus 281 ~l~~f~p~~~vs~~~G 296 (494)
||++|+|..++++++|
T Consensus 320 Dl~~~~~~~~v~~llg 335 (336)
T PRK14974 320 DLIPFDPDWFVDKLLG 335 (336)
T ss_pred hcccCCHHHHHHHHhC
Confidence 9999999999999987
No 9
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=100.00 E-value=2.3e-43 Score=359.20 Aligned_cols=286 Identities=31% Similarity=0.542 Sum_probs=254.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHH
Q 011076 4 AQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNEL 83 (494)
Q Consensus 4 ~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL 83 (494)
.+..+++...+.+|.+...+|++. +++|+.+|+++||+.+++..+++++++.....+ .++.+.+.+.++++|
T Consensus 25 ~~~~~~~~~~~~~l~~~~~~~~~~----~~~l~~~L~~~dv~~~~a~~i~~~~~~~~~~~~----~~~~~~~~~~l~~~l 96 (318)
T PRK10416 25 SKTRENFGEGINGLFAKKKIDEDL----LEELEELLIEADVGVETTEEIIEELRERVKRKN----LKDPEELKELLKEEL 96 (318)
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccC----CCCHHHHHHHHHHHH
Confidence 344566777788888878899865 478999999999999999999999998764432 345577889999999
Q ss_pred HhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccC
Q 011076 84 CKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSY 163 (494)
Q Consensus 84 ~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~ 163 (494)
.+++++...++.....++.+|+|+|++|||||||+.+||.+++..|++|+++++|+||++|.+|++.++.+.+++++...
T Consensus 97 ~~~l~~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~ 176 (318)
T PRK10416 97 AEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQK 176 (318)
T ss_pred HHHhCcCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeC
Confidence 99998655555554556789999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCChHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhc------CCCEEEEEecCCCcccHHHHHHHHh
Q 011076 164 TESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEAT------NPDLVIFVMDSSIGQAAFDQAQAFK 237 (494)
Q Consensus 164 ~~~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~------~~d~vllVvDa~~g~~~~~~~~~f~ 237 (494)
...+|...+.+++..+...+||+|||||||+.+.+..+++|+..+...+ .|+++++|+|++.+++...++..|.
T Consensus 177 ~~~dpa~~v~~~l~~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~ 256 (318)
T PRK10416 177 EGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH 256 (318)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH
Confidence 7788988888888888888999999999999999999999999877643 5899999999999999999999999
Q ss_pred ccCCeeEEEEeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCC
Q 011076 238 QSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGM 297 (494)
Q Consensus 238 ~~~~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~ 297 (494)
+.++++++|+||+|++.++|.++++...+++||.|+|+||+++||++|+|..++++++|.
T Consensus 257 ~~~~~~giIlTKlD~t~~~G~~l~~~~~~~~Pi~~v~~Gq~~~Dl~~~~~~~~~~~ll~~ 316 (318)
T PRK10416 257 EAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLGG 316 (318)
T ss_pred hhCCCCEEEEECCCCCCCccHHHHHHHHHCCCEEEEeCCCChhhCccCCHHHHHHHHhCC
Confidence 888999999999999999999999999999999999999999999999999999999863
No 10
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=100.00 E-value=8.4e-43 Score=348.35 Aligned_cols=264 Identities=32% Similarity=0.563 Sum_probs=237.8
Q ss_pred HHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEE
Q 011076 28 LNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFV 107 (494)
Q Consensus 28 i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~lv 107 (494)
+++.+++|+..|+++||+.+++.+|.+++++.....+. .....+.+.++++|.+++.....++....+++++|+|+
T Consensus 3 ~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~ 78 (272)
T TIGR00064 3 DEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKV----KDAELLKEILKEYLKEILKETDLELIVEENKPNVILFV 78 (272)
T ss_pred cHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccC----CCHHHHHHHHHHHHHHHHcccchhhcccCCCCeEEEEE
Confidence 46788999999999999999999999999887654333 23466788999999999876434454545668899999
Q ss_pred cCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhccCCcEE
Q 011076 108 GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLI 187 (494)
Q Consensus 108 G~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~~~dvI 187 (494)
|++|||||||+.+||.+|++.|++|++|++|+||+++.+|++.|+.+.+++++......||..++.+++..+..++||+|
T Consensus 79 G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~~~D~V 158 (272)
T TIGR00064 79 GVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVV 158 (272)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHCCCCEE
Confidence 99999999999999999999999999999999999999999999999999988777778898888888888888899999
Q ss_pred EEeCCCCCchhHHHHHHHHHHHHhcC------CCEEEEEecCCCcccHHHHHHHHhccCCeeEEEEeCccCCCCccchhH
Q 011076 188 IVDTSGRHKQEAALFEEMRQVSEATN------PDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALS 261 (494)
Q Consensus 188 IIDTaG~~~~~~~l~~el~~i~~~~~------~d~vllVvDa~~g~~~~~~~~~f~~~~~i~~vVltK~D~~~~~g~~ls 261 (494)
||||||+.+.+..+++|+..+..... |+++++|+|++.+++..+++..|.+.++++++|+||+|++.++|.+++
T Consensus 159 iIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~IlTKlDe~~~~G~~l~ 238 (272)
T TIGR00064 159 LIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGIILS 238 (272)
T ss_pred EEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEEEccCCCCCccHHHH
Confidence 99999999999999999999888777 999999999999999999999999888999999999999999999999
Q ss_pred HHHhcCCCeEEeccccccccccccCccchhhccc
Q 011076 262 AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295 (494)
Q Consensus 262 ~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~ 295 (494)
+...+++||.|+++||+++|+++|+|++++++++
T Consensus 239 ~~~~~~~Pi~~~~~Gq~~~dl~~~~~~~~~~~ll 272 (272)
T TIGR00064 239 IAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 272 (272)
T ss_pred HHHHHCcCEEEEeCCCChHhCccCCHHHHHHHhC
Confidence 9999999999999999999999999999998764
No 11
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=100.00 E-value=3.7e-41 Score=321.23 Aligned_cols=196 Identities=42% Similarity=0.654 Sum_probs=185.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
|++|+||||+|||||||++|||++++.+|++|++|++|+||.||++||+.+++..++|++......+|.+++.++++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 68999999999999999999999999889999999999999999999999999999999998888899999999999998
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhccCCeeEEEEeCccCCCCccchh
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGAL 260 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~~i~~vVltK~D~~~~~g~~l 260 (494)
.+++|+|||||||+.+.+.++++++..+.....|+++++|++++.+++..+.+..|.+.++++++|+||+|++.+.|.++
T Consensus 81 ~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKlDet~~~G~~l 160 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKLDETARLGALL 160 (196)
T ss_dssp HTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEESTTSSSTTHHHH
T ss_pred hcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccCceEEEEeecCCCCcccce
Confidence 88999999999999999999999999999998999999999999999999899999998999999999999999999999
Q ss_pred HHHHhcCCCeEEeccccccccccccCccchhhcccC
Q 011076 261 SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 296 (494)
Q Consensus 261 s~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G 296 (494)
++...++.||.|+++||+++|+++|+|.+++++++|
T Consensus 161 ~~~~~~~~Pi~~it~Gq~V~Dl~~~~~~~l~~~llg 196 (196)
T PF00448_consen 161 SLAYESGLPISYITTGQRVDDLEPASPERLASRLLG 196 (196)
T ss_dssp HHHHHHTSEEEEEESSSSTTGEEE-THHHHHHHHHT
T ss_pred eHHHHhCCCeEEEECCCChhcCccCCHHHHHHHhcC
Confidence 999999999999999999999999999999999987
No 12
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-38 Score=322.13 Aligned_cols=285 Identities=24% Similarity=0.483 Sum_probs=258.0
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHHHhhcCC
Q 011076 10 ISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDP 89 (494)
Q Consensus 10 l~~~~~~l~~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL~~ll~~ 89 (494)
.-..|+.|-|...|+|++++++|+.++..|+.-.|+.+.+..+.+.|...+.+..+....+-...+.+++++.|+.+|.|
T Consensus 280 aFg~fkglvG~K~L~eeDL~pvL~kM~ehLitKNVA~eiA~~LcEsV~a~Legkkv~sfs~V~~Tvk~Al~daLvQILTP 359 (587)
T KOG0781|consen 280 AFGLFKGLVGSKSLSEEDLNPVLDKMTEHLITKNVAAEIAEKLCESVAASLEGKKVGSFSTVESTVKEALRDALVQILTP 359 (587)
T ss_pred HHHHHHhhcccccccHhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHcCC
Confidence 44678889999999999999999999999999999999999999999999888877655566778899999999999987
Q ss_pred CCCCC-------CCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhcc------C
Q 011076 90 GKPSF-------TPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKA------K 156 (494)
Q Consensus 90 ~~~~~-------~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~------~ 156 (494)
...-- ..+.++|.+|.|||-.||||||.++|+|+||.+.+.+|+|+.|||||.||++||+..+++. -
T Consensus 360 ~~sVDlLRdI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~ 439 (587)
T KOG0781|consen 360 QRSVDLLRDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTM 439 (587)
T ss_pred CchhhHHHHHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccch
Confidence 54311 1234689999999999999999999999999999999999999999999999999999987 6
Q ss_pred cceeccCCCCChHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHH
Q 011076 157 IPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAF 236 (494)
Q Consensus 157 i~~~~~~~~~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f 236 (494)
|++|....+.|+..+|++|+++++.++||+|+||||||.+.+..+|..+..+..+..||.+++|-.|..|.++++++..|
T Consensus 440 v~lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~f 519 (587)
T KOG0781|consen 440 VELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKF 519 (587)
T ss_pred hHHHhhhcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHH
Confidence 88888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccC-------CeeEEEEeCccC-CCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcc
Q 011076 237 KQSV-------SVGAVIVTKMDG-HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 294 (494)
Q Consensus 237 ~~~~-------~i~~vVltK~D~-~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~ 294 (494)
++++ .++++|+||+|. +.+-|++++..+.++.||.|+|+|+...||........++.+
T Consensus 520 n~al~~~~~~r~id~~~ltk~dtv~d~vg~~~~m~y~~~~pi~fvg~gqtysdlr~l~v~~vv~~l 585 (587)
T KOG0781|consen 520 NRALADHSTPRLIDGILLTKFDTVDDKVGAAVSMVYITGKPILFVGVGQTYSDLRKLNVKAVVATL 585 (587)
T ss_pred HHHHhcCCCccccceEEEEeccchhhHHHHHhhheeecCCceEEEecCcchhhhhhccHHHHHHHh
Confidence 8754 379999999998 456799999999999999999999999999887766665544
No 13
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=1.1e-34 Score=297.61 Aligned_cols=257 Identities=19% Similarity=0.340 Sum_probs=215.5
Q ss_pred HHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEE
Q 011076 28 LNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFV 107 (494)
Q Consensus 28 i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~lv 107 (494)
....++.|...|++.||+.+++..+.+.+....... ...++ ..+.+.+.+.+...+..... . ...+++|+|+
T Consensus 176 ~~~~~~~i~~~L~~~dV~~~~~~~ll~~~~~~~~~~---~~~~~-~~~~~~l~~~l~~~l~~~~~---~-~~~~~vI~LV 247 (436)
T PRK11889 176 VPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENA---TMITE-EEVIEYILEDMRSHFNTENV---F-EKEVQTIALI 247 (436)
T ss_pred cchHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhccc---ccCCH-HHHHHHHHHHHHHHhccccc---c-ccCCcEEEEE
Confidence 345667899999999999999999999887543221 12222 44667777777777764311 1 2346789999
Q ss_pred cCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc-cCCcE
Q 011076 108 GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK-ENCDL 186 (494)
Q Consensus 108 G~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~-~~~dv 186 (494)
|++||||||++++||.+|..+|++|+++++|+||+++++||+.+++..++|++... ++..+. +++..+.. .++|+
T Consensus 248 GptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~---d~~~L~-~aL~~lk~~~~~Dv 323 (436)
T PRK11889 248 GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAMT-RALTYFKEEARVDY 323 (436)
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecC---CHHHHH-HHHHHHHhccCCCE
Confidence 99999999999999999999999999999999999999999999999999987643 455553 67777754 47999
Q ss_pred EEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc-cHHHHHHHHhccCCeeEEEEeCccCCCCccchhHHHHh
Q 011076 187 IIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ-AAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAA 265 (494)
Q Consensus 187 IIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~-~~~~~~~~f~~~~~i~~vVltK~D~~~~~g~~ls~~~~ 265 (494)
|||||||+.+.+..++.++..+.....|+.++||+|++.+. +..+++..|+. ++++++|+||+|++.++|.+++++..
T Consensus 324 VLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~-~~idglI~TKLDET~k~G~iLni~~~ 402 (436)
T PRK11889 324 ILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLKIPAV 402 (436)
T ss_pred EEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcC-CCCCEEEEEcccCCCCccHHHHHHHH
Confidence 99999999999889999999888888899999999997664 55778889986 88999999999999999999999999
Q ss_pred cCCCeEEecccccc-ccccccCccchhhcccCC
Q 011076 266 TKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGM 297 (494)
Q Consensus 266 ~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~ 297 (494)
+++||.|+++||++ +|+..+.+..++..++|.
T Consensus 403 ~~lPIsyit~GQ~VPeDI~~A~~~~L~~~llg~ 435 (436)
T PRK11889 403 SSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQT 435 (436)
T ss_pred HCcCEEEEeCCCCCCcchhhCCHHHHHHHHhcC
Confidence 99999999999999 789999999999988875
No 14
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=4.5e-34 Score=297.13 Aligned_cols=258 Identities=22% Similarity=0.304 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcC
Q 011076 30 ECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGL 109 (494)
Q Consensus 30 ~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~lvG~ 109 (494)
+.+.++...|+++||+.+++.++.+.+++.....+. .....+.+.+.+.|.+.+... .++. ....|.+|+|+|+
T Consensus 109 ~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~----~~~~~v~~~l~~~l~~~i~~~-~~~~-~~~~~~vi~lvGp 182 (388)
T PRK12723 109 PTILKIEDILRENDFSESYIKDINEFIKKEFSLSDL----DDYDKVRDSVIIYIAKTIKCS-GSII-DNLKKRVFILVGP 182 (388)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhhc----CCHHHHHHHHHHHHHHHhhcc-Cccc-cCCCCeEEEEECC
Confidence 457889999999999999999999998876533222 223445666667676666432 2222 2244789999999
Q ss_pred CCCcHHHHHHHHHHHHHh----cCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhccCCc
Q 011076 110 QGSGKTTTCTKYAYYHQK----KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCD 185 (494)
Q Consensus 110 ~GvGKTTl~~kLA~~l~~----~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~~~d 185 (494)
+|||||||+++||.+|.. +|++|++|++|+||++|.+||+.+++..++|+..... +.+ ...++..+ .++|
T Consensus 183 tGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~---~~~-l~~~L~~~--~~~D 256 (388)
T PRK12723 183 TGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIES---FKD-LKEEITQS--KDFD 256 (388)
T ss_pred CCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCc---HHH-HHHHHHHh--CCCC
Confidence 999999999999999873 5899999999999999999999999999999865443 222 23444444 5799
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHHHhcCC-CEEEEEecCCCcccHHH-HHHHHhccCCeeEEEEeCccCCCCccchhHHH
Q 011076 186 LIIVDTSGRHKQEAALFEEMRQVSEATNP-DLVIFVMDSSIGQAAFD-QAQAFKQSVSVGAVIVTKMDGHAKGGGALSAV 263 (494)
Q Consensus 186 vIIIDTaG~~~~~~~l~~el~~i~~~~~~-d~vllVvDa~~g~~~~~-~~~~f~~~~~i~~vVltK~D~~~~~g~~ls~~ 263 (494)
+|||||||+.+.+...+.++..+.....+ .+++||+|++.++.... ....|. .++++++|+||+|++.++|.+++++
T Consensus 257 lVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~-~~~~~~~I~TKlDet~~~G~~l~~~ 335 (388)
T PRK12723 257 LVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFS-PFSYKTVIFTKLDETTCVGNLISLI 335 (388)
T ss_pred EEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhc-CCCCCEEEEEeccCCCcchHHHHHH
Confidence 99999999998776667788777776654 48999999999866554 333443 4678999999999999999999999
Q ss_pred HhcCCCeEEecccccc-ccccccCccchhhcccCCCCch
Q 011076 264 AATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWS 301 (494)
Q Consensus 264 ~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~ 301 (494)
..+++||.|+++||++ +|+.+|+|..++..++|+. +.
T Consensus 336 ~~~~~Pi~yit~Gq~vPeDl~~~~~~~~~~~l~g~~-~~ 373 (388)
T PRK12723 336 YEMRKEVSYVTDGQIVPHNISIAEPLTFIKKINGYR-IS 373 (388)
T ss_pred HHHCCCEEEEeCCCCChhhhhhCCHHHHHHHhcCCC-cc
Confidence 9999999999999999 8999999999999999997 53
No 15
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=5.6e-34 Score=295.96 Aligned_cols=265 Identities=20% Similarity=0.272 Sum_probs=214.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCC-C
Q 011076 20 ATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPK-K 98 (494)
Q Consensus 20 ~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL~~ll~~~~~~~~~~-~ 98 (494)
...|+++...+.+.+++..|+++||+.+++.++++.+.+.....+.. ....+...+.+.|...+......+... .
T Consensus 145 ~~~i~~~~~~~~~~~L~~~Ll~~gV~~~la~~Li~~l~~~~~~~~~~----~~~~~~~~l~~~L~~~l~~~~~~~~~~g~ 220 (432)
T PRK12724 145 ETTIVRKEKDSPLQRLGERLVREGMSQSYVEEMASKLEERLSPVDQG----RNHNVTERAVTYLEERVSVDSDLFSGTGK 220 (432)
T ss_pred cccccHhhhhhHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccc----chHHHHHHHHHHHHHhcccchhhhhhccc
Confidence 34569999999999999999999999999999999988765432221 124467778888888775432222111 1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHH-HhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHH
Q 011076 99 GKPSVIMFVGLQGSGKTTTCTKYAYYH-QKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (494)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLA~~l-~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~ 177 (494)
.++.+++|+|++||||||++.+||.++ ...|++|+++++|+||+++.+|++.++...++|++.... +.....
T Consensus 221 ~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~-------~~~l~~ 293 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKD-------IKKFKE 293 (432)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHH-------HHHHHH
Confidence 345789999999999999999999876 567999999999999999999999999999998764211 223344
Q ss_pred HHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhc---CCCEEEEEecCCCcccHHHHHHHHhccCCeeEEEEeCccCCC
Q 011076 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEAT---NPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 178 ~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~---~~d~vllVvDa~~g~~~~~~~~~f~~~~~i~~vVltK~D~~~ 254 (494)
.+...++|+|||||||+.+.+...++++..+.... .+.+++||+|++.+++....+..+.+.++++++|+||+|++.
T Consensus 294 ~l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLDEt~ 373 (432)
T PRK12724 294 TLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEAD 373 (432)
T ss_pred HHHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEcccCCC
Confidence 44457899999999999988888888988877765 366899999999998666655444477899999999999999
Q ss_pred CccchhHHHHhcCCCeEEecccccc-ccccccCccchhhccc
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLL 295 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~ 295 (494)
++|.++++...+++||.|+++||++ +|+.++.+..++..++
T Consensus 374 ~~G~il~i~~~~~lPI~ylt~GQ~VPeDi~~A~~~~l~~~i~ 415 (432)
T PRK12724 374 FLGSFLELADTYSKSFTYLSVGQEVPFDILNATKNLMAECVV 415 (432)
T ss_pred CccHHHHHHHHHCCCEEEEecCCCCCCCHHHhhHHHHHHHhc
Confidence 9999999999999999999999999 6899998887766554
No 16
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=5.1e-34 Score=292.03 Aligned_cols=254 Identities=21% Similarity=0.338 Sum_probs=209.9
Q ss_pred HHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCC
Q 011076 33 NEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGS 112 (494)
Q Consensus 33 ~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~lvG~~Gv 112 (494)
+|+.+.|.+.+|+.+++.++.+.+........ ..+ ...+...+.+.|...+.... .+.. .++.+++|+|++||
T Consensus 145 ~~~~~~L~~~gV~~~~~~~l~~~~~~~~~~~~---~~~-~~~v~~~~~~~L~~~l~~~~-~~~~--~~~~ii~lvGptGv 217 (407)
T PRK12726 145 SDFVKFLKGRGISDTYVADFMQAGRKQFKQVE---TAH-LDDITDWFVPYLSGKLAVED-SFDL--SNHRIISLIGQTGV 217 (407)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhccccc---ccc-HHHHHHHHHHHhcCcEeeCC-Ccee--cCCeEEEEECCCCC
Confidence 48999999999999999999998866532211 112 24466677777777665432 2222 34678999999999
Q ss_pred cHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh-ccCCcEEEEeC
Q 011076 113 GKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK-KENCDLIIVDT 191 (494)
Q Consensus 113 GKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~-~~~~dvIIIDT 191 (494)
|||||+++||.++.++|++|++|++|+||+||.+||+.++...++|++.. .+|.++ .+++..+. ..++|+|||||
T Consensus 218 GKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~---~dp~dL-~~al~~l~~~~~~D~VLIDT 293 (407)
T PRK12726 218 GKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVA---TSPAEL-EEAVQYMTYVNCVDHILIDT 293 (407)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEec---CCHHHH-HHHHHHHHhcCCCCEEEEEC
Confidence 99999999999998899999999999999999999999999999998753 456665 66777765 35799999999
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc-cHHHHHHHHhccCCeeEEEEeCccCCCCccchhHHHHhcCCCe
Q 011076 192 SGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ-AAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPV 270 (494)
Q Consensus 192 aG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~-~~~~~~~~f~~~~~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi 270 (494)
||+.+.+..++.++..+.....|+.+++|++++... +..+.+..|. .++++++|+||+|++.++|++++++..+++||
T Consensus 294 AGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~~f~-~l~i~glI~TKLDET~~~G~~Lsv~~~tglPI 372 (407)
T PRK12726 294 VGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLA-EIPIDGFIITKMDETTRIGDLYTVMQETNLPV 372 (407)
T ss_pred CCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHHHhcC-cCCCCEEEEEcccCCCCccHHHHHHHHHCCCE
Confidence 999999999999999988888999999999986543 4444455554 58899999999999999999999999999999
Q ss_pred EEeccccccc-cccccCccchhhcccCCC
Q 011076 271 IFIGTGEHMD-EFEVFDVKPFVSRLLGMG 298 (494)
Q Consensus 271 ~fi~~Ge~i~-~l~~f~p~~~vs~~~G~G 298 (494)
.|+++||+++ |+..+.+..++.+++|.+
T Consensus 373 sylt~GQ~VpdDi~~a~~~~Lv~~ll~~~ 401 (407)
T PRK12726 373 LYMTDGQNITENIFRPKSRWLAERFVGTD 401 (407)
T ss_pred EEEecCCCCCcccCCCCHHHHHHHHhccc
Confidence 9999999995 688899999999999876
No 17
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=5e-34 Score=314.60 Aligned_cols=251 Identities=23% Similarity=0.327 Sum_probs=210.4
Q ss_pred HHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHHHhhcCCCC-CCCCCCCCCCeEEEEEc
Q 011076 30 ECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGK-PSFTPKKGKPSVIMFVG 108 (494)
Q Consensus 30 ~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL~~ll~~~~-~~~~~~~~~~~vI~lvG 108 (494)
+...+++..|+++||+.+++.+|++++.+.. ++ ..+.+.++++|.+.+.... ..+.. ..+.+|+|+|
T Consensus 125 ~~~~~l~~~Ll~~dv~~~la~~l~~~l~~~~---------~~-~~~~~~l~~~L~~~l~il~~~~~~~--~~g~Vi~lVG 192 (767)
T PRK14723 125 PLRASLFRWLLGAGFSGQLARALLERLPVGY---------DR-PAAMAWIRNELATHLPVLRDEDALL--AQGGVLALVG 192 (767)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHhcC---------CH-HHHHHHHHHHHHHHhhhccCCCccc--CCCeEEEEEC
Confidence 4457799999999999999999999886532 22 3357788888888664221 11112 2357999999
Q ss_pred CCCCcHHHHHHHHHHHHH-hcC-CceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhccCCcE
Q 011076 109 LQGSGKTTTCTKYAYYHQ-KKG-WKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDL 186 (494)
Q Consensus 109 ~~GvGKTTl~~kLA~~l~-~~g-~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~~~dv 186 (494)
++|||||||+.+||.++. .+| ++|++|++|+||+++.+||+.++...++|++... +|.+ ..+++..+. ++|+
T Consensus 193 pnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~---~~~~-l~~al~~~~--~~D~ 266 (767)
T PRK14723 193 PTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVK---DAAD-LRFALAALG--DKHL 266 (767)
T ss_pred CCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccC---CHHH-HHHHHHHhc--CCCE
Confidence 999999999999999885 556 6999999999999999999999999999987543 4555 467777664 7899
Q ss_pred EEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH-HHHHHhcc--CCeeEEEEeCccCCCCccchhHHH
Q 011076 187 IIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD-QAQAFKQS--VSVGAVIVTKMDGHAKGGGALSAV 263 (494)
Q Consensus 187 IIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~-~~~~f~~~--~~i~~vVltK~D~~~~~g~~ls~~ 263 (494)
|||||||+.+.+..+++++..+.....|+++++|+|++.+.+..+ .+..|+.. .+++++|+||+|++.++|.++++.
T Consensus 267 VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~ 346 (767)
T PRK14723 267 VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDTV 346 (767)
T ss_pred EEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHHH
Confidence 999999999999899999988888888999999999998766554 67888764 378999999999999999999999
Q ss_pred HhcCCCeEEecccccc-ccccccCccchhhcccCCC
Q 011076 264 AATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMG 298 (494)
Q Consensus 264 ~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~G 298 (494)
..+++||.|+++||++ +||++|+|..++.++++..
T Consensus 347 ~~~~lPI~yit~GQ~VPdDL~~a~~~~lv~~ll~~~ 382 (767)
T PRK14723 347 IRHRLPVHYVSTGQKVPEHLELAQADELVDRAFATP 382 (767)
T ss_pred HHHCCCeEEEecCCCChhhcccCCHHHHHHHHhccc
Confidence 9999999999999999 8999999999999999854
No 18
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00 E-value=4e-32 Score=288.25 Aligned_cols=275 Identities=20% Similarity=0.292 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHH
Q 011076 4 AQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNEL 83 (494)
Q Consensus 4 ~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL 83 (494)
++|.+.|...+.++..... ..-.+...+++..|+++||+.+++.++++++++....+ .....+.+.|
T Consensus 173 ~~lr~~l~~~~~~l~~~~~---~~~~p~~~~l~~~Ll~~dv~~~la~~l~~~l~~~~~~~----------~~~~~l~~~l 239 (484)
T PRK06995 173 RSLRGMLEEQLASLAWGER---QRRDPVRAALLKHLLAAGFSAQLVRMLVDNLPEGDDAE----------AALDWVQSAL 239 (484)
T ss_pred HHHHHHHHHHHHHHhcccc---ccccHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhchh----------HHHHHHHHHH
Confidence 4556666666666652111 11245668899999999999999999999987754322 1234444445
Q ss_pred HhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHH-hcC-CceEEEEcccCcchhHHHHHhhhhccCcceec
Q 011076 84 CKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQ-KKG-WKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161 (494)
Q Consensus 84 ~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~-~~g-~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~ 161 (494)
.+.+..-... .....++.+++|+|++|||||||+.+||.++. ++| ++|++|++|+||.++++||+.|+...+++++.
T Consensus 240 ~~~l~~~~~~-~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~ 318 (484)
T PRK06995 240 AKNLPVLDSE-DALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHA 318 (484)
T ss_pred HHHHhhccCc-cccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeec
Confidence 4444321111 11112357999999999999999999999885 455 59999999999999999999999999998876
Q ss_pred cCCCCChHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhccCC
Q 011076 162 SYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVS 241 (494)
Q Consensus 162 ~~~~~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~~ 241 (494)
.....+.. . ......++|+++|||+|+.+.+..+.+++..+.....|.+.++|+|++.+...+..+..+....+
T Consensus 319 ~~~~~Dl~---~---aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~~~~ 392 (484)
T PRK06995 319 VKDAADLR---L---ALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYRGPG 392 (484)
T ss_pred cCCchhHH---H---HHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhccCC
Confidence 54443322 1 12233578999999999998887666666666555558889999999988776665444445577
Q ss_pred eeEEEEeCccCCCCccchhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCC
Q 011076 242 VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMG 298 (494)
Q Consensus 242 i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~G 298 (494)
++++|+||+|++.+.|.+++++..+++||.|+++||++ +||++|++..++.++++.+
T Consensus 393 ~~g~IlTKlDet~~~G~~l~i~~~~~lPI~yvt~GQ~VPeDL~~a~~~~lv~~ll~~~ 450 (484)
T PRK06995 393 LAGCILTKLDEAASLGGALDVVIRYKLPLHYVSNGQRVPEDLHLANKKFLLHRAFCAP 450 (484)
T ss_pred CCEEEEeCCCCcccchHHHHHHHHHCCCeEEEecCCCChhhhccCCHHHHHHHHhcCc
Confidence 89999999999999999999999999999999999999 9999999999999998865
No 19
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00 E-value=4e-32 Score=286.78 Aligned_cols=256 Identities=24% Similarity=0.371 Sum_probs=211.3
Q ss_pred HHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEE
Q 011076 25 EKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVI 104 (494)
Q Consensus 25 e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL~~ll~~~~~~~~~~~~~~~vI 104 (494)
...+++.++++...|+++||+.+++.++.+.+.+....... .+.+.+.+.|.+.+....... .. ...++
T Consensus 156 ~~~~~~~~~~~~~~L~~~gv~~~~~~~l~~~~~~~~~~~~~--------~~~~~~~~~L~~~l~~~~~~~-~~--~~~~i 224 (424)
T PRK05703 156 VERIPPEFAELYKRLKRSGLSPEIAEKLLKLLLEHMPPRER--------TAWRYLLELLANMIPVRVEDI-LK--QGGVV 224 (424)
T ss_pred cccchHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHHHHhCcccccc-cc--CCcEE
Confidence 34667788999999999999999999999998776433221 356788888988887654443 22 24589
Q ss_pred EEEcCCCCcHHHHHHHHHHHHH--hcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 105 MFVGLQGSGKTTTCTKYAYYHQ--KKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 105 ~lvG~~GvGKTTl~~kLA~~l~--~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
+|+|++|||||||+.+||.++. +.|++|++|++|+||.++.+||+.++...++|++...+..+. ...+..+ .
T Consensus 225 ~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l----~~~l~~~--~ 298 (424)
T PRK05703 225 ALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKEL----AKALEQL--R 298 (424)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhH----HHHHHHh--C
Confidence 9999999999999999999998 458999999999999999999999999999998765543322 2233333 3
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHH-hcCCCEEEEEecCCCcccHHHH-HHHHhccCCeeEEEEeCccCCCCccchh
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSE-ATNPDLVIFVMDSSIGQAAFDQ-AQAFKQSVSVGAVIVTKMDGHAKGGGAL 260 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~-~~~~d~vllVvDa~~g~~~~~~-~~~f~~~~~i~~vVltK~D~~~~~g~~l 260 (494)
++|+|||||||+.+.+...+.++..+.. ...+..+++|++++.+...... ...|. .++++++|+||+|++...|.++
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~-~~~~~~vI~TKlDet~~~G~i~ 377 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFS-RLPLDGLIFTKLDETSSLGSIL 377 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhC-CCCCCEEEEecccccccccHHH
Confidence 6999999999999988888888887776 4467899999999988766554 45554 6778899999999999999999
Q ss_pred HHHHhcCCCeEEecccccc-ccccccCccchhhcccCCC
Q 011076 261 SAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMG 298 (494)
Q Consensus 261 s~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~G 298 (494)
+++..+++||.|+++|+++ +|+++|++..++++++|..
T Consensus 378 ~~~~~~~lPv~yit~Gq~VpdDl~~a~~~~l~~~ll~~~ 416 (424)
T PRK05703 378 SLLIESGLPISYLTNGQRVPDDIKVANPEELVRLLLGGF 416 (424)
T ss_pred HHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHHhccc
Confidence 9999999999999999998 8999999999999988754
No 20
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00 E-value=1.3e-31 Score=266.52 Aligned_cols=259 Identities=19% Similarity=0.356 Sum_probs=210.2
Q ss_pred HHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEE
Q 011076 25 EKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVI 104 (494)
Q Consensus 25 e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL~~ll~~~~~~~~~~~~~~~vI 104 (494)
.+.+.+.+++++++|+++||+.+++.++.+...... +... .....+.+.+.+.+...+++.. +..+++.++
T Consensus 8 ~~~~~~~~~~~~~~l~~~dv~~~~~~~l~~~~~i~f--~~~~---~~~~~vl~~v~~~l~~~~~~~~----~~~~~~~~i 78 (270)
T PRK06731 8 QESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKF--ENAT---MITEEVIEYILEDMSSHFNTEN----VFEKEVQTI 78 (270)
T ss_pred hhcccHHHHHHHHHHHHcCCCHHHHHHHhhcceEEe--cCCC---ccccHHHHHHhcccEEeeCCcc----cccCCCCEE
Confidence 356677889999999999999999999987543221 1111 0122334445555544443221 112345689
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc-cC
Q 011076 105 MFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK-EN 183 (494)
Q Consensus 105 ~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~-~~ 183 (494)
+|+|++|+||||++..|+.++..++++|+++++|++|.++++||+.++...+++++.. .++..+ .+++..+.. .+
T Consensus 79 ~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~---~~~~~l-~~~l~~l~~~~~ 154 (270)
T PRK06731 79 ALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV---RDEAAM-TRALTYFKEEAR 154 (270)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec---CCHHHH-HHHHHHHHhcCC
Confidence 9999999999999999999998889999999999999999999999999999987653 344444 456666643 47
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCC-cccHHHHHHHHhccCCeeEEEEeCccCCCCccchhHH
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSI-GQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSA 262 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~-g~~~~~~~~~f~~~~~i~~vVltK~D~~~~~g~~ls~ 262 (494)
+|+|||||||+.+.+..+++++..+.....|++++||+|++. +++..++++.|+. ++++++|+||+|++.++|.++++
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~-~~~~~~I~TKlDet~~~G~~l~~ 233 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLKI 233 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCC-CCCCEEEEEeecCCCCccHHHHH
Confidence 999999999999999999999998888889999999999975 4577789999976 88999999999999999999999
Q ss_pred HHhcCCCeEEecccccc-ccccccCccchhhcccCC
Q 011076 263 VAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGM 297 (494)
Q Consensus 263 ~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~ 297 (494)
+..+++||.|+++||++ +|+..+++..++..++|.
T Consensus 234 ~~~~~~Pi~~it~Gq~vp~di~~a~~~~l~~~~~~~ 269 (270)
T PRK06731 234 PAVSSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQT 269 (270)
T ss_pred HHHHCcCEEEEeCCCCCCcchhhCCHHHHHHHHhcC
Confidence 99999999999999999 589999999999888875
No 21
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=99.98 E-value=3.3e-31 Score=271.84 Aligned_cols=191 Identities=30% Similarity=0.482 Sum_probs=167.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH--hcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ--KKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~--~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~ 178 (494)
.++|+||||+|||||||++|||+.+. ...++|+||+.|+||.||.+||+.++...++|+..+++. .++ .+++..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~---~el-~~ai~~ 278 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSP---KEL-AEAIEA 278 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCH---HHH-HHHHHH
Confidence 67999999999999999999999998 567899999999999999999999999999999876553 222 334444
Q ss_pred HhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH-HHHHHHhccCCeeEEEEeCccCCCCcc
Q 011076 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF-DQAQAFKQSVSVGAVIVTKMDGHAKGG 257 (494)
Q Consensus 179 ~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~-~~~~~f~~~~~i~~vVltK~D~~~~~g 257 (494)
+. ++|+|||||+|+.+.|.....+|..+.....+..++||++++...... +....|. .++++++|+||+|+++..|
T Consensus 279 l~--~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~-~~~i~~~I~TKlDET~s~G 355 (407)
T COG1419 279 LR--DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFS-LFPIDGLIFTKLDETTSLG 355 (407)
T ss_pred hh--cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhc-cCCcceeEEEcccccCchh
Confidence 43 789999999999999999999999999988889999999998765444 4556664 4789999999999999999
Q ss_pred chhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCC
Q 011076 258 GALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMG 298 (494)
Q Consensus 258 ~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~G 298 (494)
..++++..+++||.|+++|+++ +|+....|..++++++|.-
T Consensus 356 ~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~ 397 (407)
T COG1419 356 NLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTF 397 (407)
T ss_pred HHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhccc
Confidence 9999999999999999999999 6899999999999999864
No 22
>PF02978 SRP_SPB: Signal peptide binding domain; InterPro: IPR004125 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the M domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle; PDB: 2FFH_B 3NDB_B 2V3C_C 1QZW_G 1QZX_B 3KL4_A 2JQE_A 1HQ1_A 1RY1_W 1MFQ_C ....
Probab=99.97 E-value=2.2e-32 Score=233.99 Aligned_cols=100 Identities=48% Similarity=0.807 Sum_probs=89.6
Q ss_pred hhhHHHHHHHHHHHhccCChhHHhhcCCCCCCcc---Ccc-hhhhhhHHhHHhHhHhhcCCCHHhhcCCCCCCcchHHHH
Q 011076 327 NFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSEL---MPK-GREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIM 402 (494)
Q Consensus 327 ~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~~---~~~-~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~i~~sr~~ 402 (494)
+||++||++|+++++||||+++|++||||++ .. ++. ..++.+++++++|++||+|||++||++| .+|++||++
T Consensus 1 ~F~l~Df~~Q~~~i~kmG~l~~i~~miPG~~-~~~~~~~~~~~~~~~~~~lk~~~~Ii~SMT~~Er~~p--~ll~~sR~~ 77 (104)
T PF02978_consen 1 KFTLRDFLEQLQQIKKMGPLSKIMSMIPGMG-NMMESLPSEQEEEEDEKKLKRMEAIIDSMTPEERDNP--KLLNESRRR 77 (104)
T ss_dssp SSCHHHHHHHHHHHHHTSTTHHHHTTSSSSS-SS-SSTTCSSSSHHHHHHHHHHHHHHTTSBHHHHHCG--GGHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHCcCcc-ccccccchhcchhhhHHHHHHHHHHHHCcCHHHHhCc--cccchHHHH
Confidence 5999999999999999999999999999998 34 232 2234578889999999999999999986 889999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 011076 403 RIARGSGRQVREVMEMLEEYKRLAKIW 429 (494)
Q Consensus 403 rIa~gsg~~~~~v~~ll~~~~~~~~~~ 429 (494)
|||+|||++++|||+||+||++|++||
T Consensus 78 RIA~GSG~~~~eV~~ll~~f~~~~~mm 104 (104)
T PF02978_consen 78 RIARGSGTTVQEVNELLKQFKQMKKMM 104 (104)
T ss_dssp HHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999997
No 23
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.97 E-value=6.7e-30 Score=267.66 Aligned_cols=249 Identities=19% Similarity=0.243 Sum_probs=197.8
Q ss_pred HHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCC
Q 011076 32 LNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQG 111 (494)
Q Consensus 32 l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~lvG~~G 111 (494)
...+...|+++||+.+++..+.+.+......+.. .+.+...+.+.|..+ ... +. . ..+.+|+|+|++|
T Consensus 134 ~~~~~~~L~~~~v~~~la~~l~~~~~~~~~~~~~------~~~~~~~l~~~l~~~-~~~--~~-~--~~g~vi~lvGpnG 201 (420)
T PRK14721 134 GMKVLRTLLSAGFSPLLSRHLLEKLPADRDFEQS------LKKTISLLTLNLRTI-GGD--EI-I--EQGGVYALIGPTG 201 (420)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhhH------HHHHHHHHHHHHHhc-CCc--cc-c--CCCcEEEEECCCC
Confidence 4778899999999999999999988775432211 123444444444322 211 11 1 2356899999999
Q ss_pred CcHHHHHHHHHHHHHh-c-CCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhccCCcEEEE
Q 011076 112 SGKTTTCTKYAYYHQK-K-GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIV 189 (494)
Q Consensus 112 vGKTTl~~kLA~~l~~-~-g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~~~dvIII 189 (494)
||||||+++||.++.. . +.++.++++|+||.++++|+..+++..++|++...+..+. ..++.. ..++|+|+|
T Consensus 202 ~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl----~~al~~--l~~~d~VLI 275 (420)
T PRK14721 202 VGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADL----QLMLHE--LRGKHMVLI 275 (420)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHH----HHHHHH--hcCCCEEEe
Confidence 9999999999987653 3 4789999999999999999999999999998765543332 223333 357899999
Q ss_pred eCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhccCCeeEEEEeCccCCCCccchhHHHHhcCCC
Q 011076 190 DTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSP 269 (494)
Q Consensus 190 DTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~~i~~vVltK~D~~~~~g~~ls~~~~~g~P 269 (494)
||+|+.+.+..+++++..+.....+.+++||+|++.+......+..+...++++++|+||+|++.+.|.+++++..+++|
T Consensus 276 DTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~~~~~I~TKlDEt~~~G~~l~~~~~~~lP 355 (420)
T PRK14721 276 DTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGIHGCIITKVDEAASLGIALDAVIRRKLV 355 (420)
T ss_pred cCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeeeCCCCccHHHHHHHHhCCC
Confidence 99999998888999998877666788999999999876665544444456889999999999999999999999999999
Q ss_pred eEEecccccc-ccccccCccchhhcccCCC
Q 011076 270 VIFIGTGEHM-DEFEVFDVKPFVSRLLGMG 298 (494)
Q Consensus 270 i~fi~~Ge~i-~~l~~f~p~~~vs~~~G~G 298 (494)
|.|+++|+++ +|++++++..++.++++.+
T Consensus 356 i~yvt~Gq~VP~Dl~~a~~~~lv~~ll~~~ 385 (420)
T PRK14721 356 LHYVTNGQKVPEDLHEANSRYLLHRIFKPS 385 (420)
T ss_pred EEEEECCCCchhhhhhCCHHHHHHHHhcCc
Confidence 9999999999 8999999999999998855
No 24
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.97 E-value=8e-30 Score=263.44 Aligned_cols=251 Identities=21% Similarity=0.302 Sum_probs=196.0
Q ss_pred HHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCC
Q 011076 33 NEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGS 112 (494)
Q Consensus 33 ~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~lvG~~Gv 112 (494)
..+...|++.+++..++..+.+.+...... .++ ......+.+.|...+...... ...-.+..+++|+|++||
T Consensus 77 ~~l~~~L~~~g~~~~l~~~l~~~~~~~~~~------~~~-~~~~~~~~~~l~~~l~~~~~~-~~~~~~g~ii~lvGptGv 148 (374)
T PRK14722 77 GALTKYLFAAGFSAQLVRMIVDNLPEGEGY------DTL-DAAADWAQSVLAANLPVLDSE-DALMERGGVFALMGPTGV 148 (374)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHhhhhhccc------CCH-HHHHHHHHHHHHhcchhhcCC-CccccCCcEEEEECCCCC
Confidence 678899999999999999999987552110 011 122333444444433221111 111123468999999999
Q ss_pred cHHHHHHHHHHHHHh-cC-CceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhccCCcEEEEe
Q 011076 113 GKTTTCTKYAYYHQK-KG-WKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVD 190 (494)
Q Consensus 113 GKTTl~~kLA~~l~~-~g-~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~~~dvIIID 190 (494)
|||||+.+||.++.. .| ++|++|++|+||+++++||+.|++..++++....+..+.. .++..+ .++|+||||
T Consensus 149 GKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~----~~l~~l--~~~DlVLID 222 (374)
T PRK14722 149 GKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ----LALAEL--RNKHMVLID 222 (374)
T ss_pred CHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHH----HHHHHh--cCCCEEEEc
Confidence 999999999998764 46 6999999999999999999999999999998766655543 233333 478999999
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH-HHHHHhccC--------CeeEEEEeCccCCCCccchhH
Q 011076 191 TSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD-QAQAFKQSV--------SVGAVIVTKMDGHAKGGGALS 261 (494)
Q Consensus 191 TaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~-~~~~f~~~~--------~i~~vVltK~D~~~~~g~~ls 261 (494)
|||+.+.+..+.+++..+.....++++++|++++.+.+... .+..|.... +++++|+||+|++.+.|.+++
T Consensus 223 TaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~~G~~l~ 302 (374)
T PRK14722 223 TIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLD 302 (374)
T ss_pred CCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCCccHHHH
Confidence 99999988888888887766667889999999999877665 567777542 578999999999999999999
Q ss_pred HHHhcCCCeEEecccccc-ccccccCccchhhcccCC
Q 011076 262 AVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGM 297 (494)
Q Consensus 262 ~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~ 297 (494)
++..+++||.|+++|+++ +|+.++.+..++.+.++.
T Consensus 303 ~~~~~~lPi~yvt~Gq~VPedl~~a~~~~l~~~~~~~ 339 (374)
T PRK14722 303 TVIRYKLPVHYVSTGQKVPENLYVATKKFLLKSAFCA 339 (374)
T ss_pred HHHHHCcCeEEEecCCCCCcccccCCHHHHHHHHhcc
Confidence 999999999999999999 679999998888877763
No 25
>COG1159 Era GTPase [General function prediction only]
Probab=99.97 E-value=2.6e-31 Score=261.93 Aligned_cols=249 Identities=22% Similarity=0.306 Sum_probs=201.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHH
Q 011076 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (494)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~ 178 (494)
.++..|+++|+||||||||+|+|. |.|++|||. +++|||..+. +.++.
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~------G~KisIvS~-----------k~QTTR~~I~--GI~t~------------- 51 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALV------GQKISIVSP-----------KPQTTRNRIR--GIVTT------------- 51 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHh------cCceEeecC-----------Ccchhhhhee--EEEEc-------------
Confidence 357789999999999999999999 999999999 9999999884 44442
Q ss_pred HhccCCcEEEEeCCCCCchhHHHHHHHHHHHH--hcCCCEEEEEecCCCccc--HHHHHHHHhcc-CCeeEEEEeCccCC
Q 011076 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSE--ATNPDLVIFVMDSSIGQA--AFDQAQAFKQS-VSVGAVIVTKMDGH 253 (494)
Q Consensus 179 ~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~--~~~~d~vllVvDa~~g~~--~~~~~~~f~~~-~~i~~vVltK~D~~ 253 (494)
+++++|+|||||+|.....+.+.|.+... ..+.|.++||+|+..+.. ..-++..++.. .|+ .+++||+|..
T Consensus 52 ---~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pv-il~iNKID~~ 127 (298)
T COG1159 52 ---DNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPV-ILVVNKIDKV 127 (298)
T ss_pred ---CCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCe-EEEEEccccC
Confidence 36899999999999988888888874443 447899999999986443 33355666552 344 9999999987
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC-------CCCchHHHhhhhcc
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP-------MDQQPELLQKLSEG 326 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~-------~~~~~~~~~~~~~~ 326 (494)
...-.+++.. +......+|....++|++.|.+ ++.|++.+.++++ +|..++..++|...
T Consensus 128 ~~~~~l~~~~-------------~~~~~~~~f~~ivpiSA~~g~n-~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~a 193 (298)
T COG1159 128 KPKTVLLKLI-------------AFLKKLLPFKEIVPISALKGDN-VDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAA 193 (298)
T ss_pred CcHHHHHHHH-------------HHHHhhCCcceEEEeeccccCC-HHHHHHHHHHhCCCCCCcCChhhccCChHHHHHH
Confidence 6643334443 3344566788889999999999 9999999999884 67788999999999
Q ss_pred hhhHHHHHHHHHHHhccCChhHHhhcCCCCCCccCcchhhhh--hHHhHHhHhHhhcCCCHHhhcCCCCCCc--chHHHH
Q 011076 327 NFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKE--SQAKIKRYMTMMDSMTNEELDSSNPKLM--NDSRIM 402 (494)
Q Consensus 327 ~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~~~~~~~~~~--~~~~~~~~~~ii~smt~~er~~~~~~~i--~~sr~~ 402 (494)
|+++|+++..+++ +|||.. .+ .+ +++ .++...+++|.|. +||++||++|| +|+++|
T Consensus 194 EiiREk~~~~l~e------------ElPhsv-~V--eI-e~~~~~~~~~~~I~a~I~----Ver~sQK~IiIGk~G~~iK 253 (298)
T COG1159 194 EIIREKLLLLLRE------------ELPHSV-AV--EI-EEFEEREKGLLKIHATIY----VERESQKGIIIGKNGAMIK 253 (298)
T ss_pred HHHHHHHHHhccc------------ccCceE-EE--EE-EEEEecCCCeEEEEEEEE----EecCCccceEECCCcHHHH
Confidence 9999999999998 999987 45 33 222 3577889999999 99999999888 799999
Q ss_pred HHHhhcCCCHHHHHHHHH
Q 011076 403 RIARGSGRQVREVMEMLE 420 (494)
Q Consensus 403 rIa~gsg~~~~~v~~ll~ 420 (494)
+|+..|. +++.+++.
T Consensus 254 ~IG~~AR---~~ie~l~~ 268 (298)
T COG1159 254 KIGTAAR---KDIEKLLG 268 (298)
T ss_pred HHHHHHH---HHHHHHhC
Confidence 9999998 66666553
No 26
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.95 E-value=6.5e-27 Score=248.45 Aligned_cols=246 Identities=22% Similarity=0.284 Sum_probs=191.3
Q ss_pred HHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcC
Q 011076 30 ECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGL 109 (494)
Q Consensus 30 ~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~lvG~ 109 (494)
..-..+.+.|++.||+..++.++.+.+...... ..-...+.+.|.+.+......+. . ...+|+|+|+
T Consensus 292 P~~~~l~~~L~~~Gvs~~la~~L~~~l~~~~~~----------~~~~~~l~~~L~~~l~v~~~~~l-~--~G~vIaLVGP 358 (559)
T PRK12727 292 PVRAQALELMDDYGFDAGLTRDVAMQIPADTEL----------HRGRGLMLGLLSKRLPVAPVDPL-E--RGGVIALVGP 358 (559)
T ss_pred hHHHHHHHHHHHCCCCHHHHHHHHHhhhcccch----------hhHHHHHHHHHHHhcCcCccccc-c--CCCEEEEECC
Confidence 344567789999999999999999987653221 11235566777776643333221 1 2468999999
Q ss_pred CCCcHHHHHHHHHHHHHhc--CCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhccCCcEE
Q 011076 110 QGSGKTTTCTKYAYYHQKK--GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLI 187 (494)
Q Consensus 110 ~GvGKTTl~~kLA~~l~~~--g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~~~dvI 187 (494)
+|+|||||+.+|+.++..+ +++|++|+.|+||.++.+||+.++...++++..... +. -....+..+ .++|+|
T Consensus 359 tGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d---~~-~L~~aL~~l--~~~DLV 432 (559)
T PRK12727 359 TGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADS---AE-SLLDLLERL--RDYKLV 432 (559)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCc---HH-HHHHHHHHh--ccCCEE
Confidence 9999999999999988765 589999999999999999999999999998765432 22 223444444 479999
Q ss_pred EEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc-cHHHHHHHHhccCCeeEEEEeCccCCCCccchhHHHHhc
Q 011076 188 IVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ-AAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAAT 266 (494)
Q Consensus 188 IIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~-~~~~~~~~f~~~~~i~~vVltK~D~~~~~g~~ls~~~~~ 266 (494)
||||||+.+.+..+.+++..+... .....++|++++.+. +..+.++.|.. .++.++|+||+|++.+.|.++++...+
T Consensus 433 LIDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss~~Dl~eii~~f~~-~~~~gvILTKlDEt~~lG~aLsv~~~~ 510 (559)
T PRK12727 433 LIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHFSDLDEVVRRFAH-AKPQGVVLTKLDETGRFGSALSVVVDH 510 (559)
T ss_pred EecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCChhHHHHHHHHHHh-hCCeEEEEecCcCccchhHHHHHHHHh
Confidence 999999998888888777655443 356788999988654 44456677765 467899999999999999999999999
Q ss_pred CCCeEEecccccc-ccccccCccchhhcccC
Q 011076 267 KSPVIFIGTGEHM-DEFEVFDVKPFVSRLLG 296 (494)
Q Consensus 267 g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G 296 (494)
++||.|+++|+++ +||+++++..+++++..
T Consensus 511 ~LPI~yvt~GQ~VPeDL~~A~~~~Lv~r~~~ 541 (559)
T PRK12727 511 QMPITWVTDGQRVPDDLHRANAASLVLRLED 541 (559)
T ss_pred CCCEEEEeCCCCchhhhhcCCHHHHHHHHHH
Confidence 9999999999999 79999999888876543
No 27
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.94 E-value=9.2e-26 Score=210.41 Aligned_cols=172 Identities=45% Similarity=0.720 Sum_probs=155.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
+++++|+||+||||++.+++..+++.|++|++|++|++|++..+++..++.+.+++++......++.++..+.+......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREE 81 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999999999999999999999999999887767778888888888877778
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhccCCeeEEEEeCccCCCCccchhHH
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSA 262 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~~i~~vVltK~D~~~~~g~~ls~ 262 (494)
++|+|||||||....+.....++..+.....++.+++|+|+..+.+..+.+..|.+..+++++|+||+|...+.|.++++
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~~~~~~~~viltk~D~~~~~g~~~~~ 161 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFNEALGITGVILTKLDGDARGGAALSI 161 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHhhCCCCEEEEECCcCCCCcchhhhh
Confidence 99999999999987777888888877777789999999999888877788888877677899999999999999999999
Q ss_pred HHhcCCCeEEec
Q 011076 263 VAATKSPVIFIG 274 (494)
Q Consensus 263 ~~~~g~Pi~fi~ 274 (494)
+..+++|+.|+|
T Consensus 162 ~~~~~~p~~~~~ 173 (173)
T cd03115 162 RAVTGKPIKFIG 173 (173)
T ss_pred HHHHCcCeEeeC
Confidence 999999999986
No 28
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.91 E-value=1.3e-24 Score=217.31 Aligned_cols=245 Identities=20% Similarity=0.255 Sum_probs=176.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|+|||||||++|+|. |.++++|+. ++.+|+..+. +.... .
T Consensus 2 ~V~liG~pnvGKSTLln~L~------~~~~~~vs~-----------~~~TTr~~i~--~i~~~----------------~ 46 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLH------GQKISITSP-----------KAQTTRNRIS--GIHTT----------------G 46 (270)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCcEeecCC-----------CCCcccCcEE--EEEEc----------------C
Confidence 58999999999999999999 999999988 6677776442 22211 2
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHH--HHHhcCCCEEEEEecCCCcccHHH-HHHHHhccCCeeEEEEeCccCCCCccch
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQ--VSEATNPDLVIFVMDSSIGQAAFD-QAQAFKQSVSVGAVIVTKMDGHAKGGGA 259 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~--i~~~~~~d~vllVvDa~~g~~~~~-~~~~f~~~~~i~~vVltK~D~~~~~g~~ 259 (494)
++.++++||||.+.....+.+.+.. ......+|.+++|+|++....... ....+...-.+..+|+||+|...+.. .
T Consensus 47 ~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~~~~~-~ 125 (270)
T TIGR00436 47 ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNKFKDK-L 125 (270)
T ss_pred CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCCCHHH-H
Confidence 4678999999987654444444432 122447899999999986543322 22233322223489999999864321 1
Q ss_pred hHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC-------CCCchHHHhhhhcchhhHHH
Q 011076 260 LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP-------MDQQPELLQKLSEGNFTLRI 332 (494)
Q Consensus 260 ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~-------~~~~~~~~~~~~~~~f~~~d 332 (494)
..... .......|.+..++|+..|.| ++.|++.+.+.++ ++..++..+++...|+++|.
T Consensus 126 ~~~~~-------------~~~~~~~~~~v~~iSA~~g~g-i~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~ 191 (270)
T TIGR00436 126 LPLID-------------KYAILEDFKDIVPISALTGDN-TSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREK 191 (270)
T ss_pred HHHHH-------------HHHhhcCCCceEEEecCCCCC-HHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHH
Confidence 21111 111223455678899999999 9999999999774 45668888999999999999
Q ss_pred HHHHHHHHhccCChhHHhhcCCCCCCccCcchhhhhh--HHhHHhHhHhhcCCCHHhhcCCCCCCc--chHHHHHHHhhc
Q 011076 333 MYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKES--QAKIKRYMTMMDSMTNEELDSSNPKLM--NDSRIMRIARGS 408 (494)
Q Consensus 333 ~~~ql~~~~~~g~~~~~~~~lPg~~~~~~~~~~~~~~--~~~~~~~~~ii~smt~~er~~~~~~~i--~~sr~~rIa~gs 408 (494)
++..+++ ++||.. .+ .+ +.+. +....+|.|.|. +||++||++|| +|+++|+|+..|
T Consensus 192 ~~~~~~~------------e~p~~~-~~--~~-~~~~~~~~~~~~i~~~i~----v~~~s~k~iiig~~g~~ik~i~~~a 251 (270)
T TIGR00436 192 IIRYTKE------------EIPHSV-RV--EI-ERKSFNEKGLLKIHALIS----VERESQKKIIIGKNGSMIKAIGIAA 251 (270)
T ss_pred HHHhccc------------ccCceE-EE--EE-EEEEECCCCeEEEEEEEE----ECcCCceeEEEcCCcHHHHHHHHHH
Confidence 9999999 999986 34 22 3332 223347999999 99999998888 799999999999
Q ss_pred CCCHHHHHHHHH
Q 011076 409 GRQVREVMEMLE 420 (494)
Q Consensus 409 g~~~~~v~~ll~ 420 (494)
. .|+.+++.
T Consensus 252 r---~~l~~~~~ 260 (270)
T TIGR00436 252 R---KDILELFD 260 (270)
T ss_pred H---HHHHHHhC
Confidence 8 77777764
No 29
>PRK00089 era GTPase Era; Reviewed
Probab=99.91 E-value=2.6e-24 Score=217.10 Aligned_cols=248 Identities=22% Similarity=0.279 Sum_probs=176.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
++.+|+++|+|||||||++|.|. |.++++++. .+.+++..+.... +
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~------g~~~~~vs~-----------~~~tt~~~i~~i~--~--------------- 49 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALV------GQKISIVSP-----------KPQTTRHRIRGIV--T--------------- 49 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHh------CCceeecCC-----------CCCcccccEEEEE--E---------------
Confidence 46789999999999999999999 999999988 4445555442211 1
Q ss_pred hccCCcEEEEeCCCCCchhHHHHHHHHHH--HHhcCCCEEEEEecCCCcc--cHHHHHHHHhccCCeeEEEEeCccCCCC
Q 011076 180 KKENCDLIIVDTSGRHKQEAALFEEMRQV--SEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~~~l~~el~~i--~~~~~~d~vllVvDa~~g~--~~~~~~~~f~~~~~i~~vVltK~D~~~~ 255 (494)
.++++++++||||.+.....+.+.+... .....+|.+++|+|++.+. ........+...-.+..+|+||+|....
T Consensus 50 -~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~ 128 (292)
T PRK00089 50 -EDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKD 128 (292)
T ss_pred -cCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCC
Confidence 1247899999999987655554444322 2345789999999998632 2222333333221234899999998633
Q ss_pred ccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC-------CCCchHHHhhhhcchh
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP-------MDQQPELLQKLSEGNF 328 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~-------~~~~~~~~~~~~~~~f 328 (494)
........ +.+.+..++.+..++|+..|.| ++.|++.+.+.++ ++..++...++...|+
T Consensus 129 ~~~l~~~~-------------~~l~~~~~~~~i~~iSA~~~~g-v~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~Ei 194 (292)
T PRK00089 129 KEELLPLL-------------EELSELMDFAEIVPISALKGDN-VDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEI 194 (292)
T ss_pred HHHHHHHH-------------HHHHhhCCCCeEEEecCCCCCC-HHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHH
Confidence 22222222 1222223466677899999999 9999999998874 4556778889999999
Q ss_pred hHHHHHHHHHHHhccCChhHHhhcCCCCCCccCcchhhhhhHHhHHhHhHhhcCCCHHhhcCCCCCCc--chHHHHHHHh
Q 011076 329 TLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLM--NDSRIMRIAR 406 (494)
Q Consensus 329 ~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~i--~~sr~~rIa~ 406 (494)
++|.++.++++ ++||.. .+ .+ +.+.+....+|+|.|. +||++|+++|| +|+++++|+.
T Consensus 195 iRe~~~~~l~~------------e~p~~~-~v--~~-~~~~~~~~~~i~~~i~----v~~~~~k~i~ig~~g~~i~~i~~ 254 (292)
T PRK00089 195 IREKLLRLLGD------------ELPYSV-AV--EI-EKFEERGLVRIEATIY----VERDSQKGIIIGKGGAMLKKIGT 254 (292)
T ss_pred HHHHHHhhCCc------------cCCceE-EE--EE-EEEEECCeEEEEEEEE----EccCCceeEEEeCCcHHHHHHHH
Confidence 99999999998 999986 44 22 3333224456999999 99999998888 7999999999
Q ss_pred hcCCCHHHHHHHH
Q 011076 407 GSGRQVREVMEML 419 (494)
Q Consensus 407 gsg~~~~~v~~ll 419 (494)
.|. .++++++
T Consensus 255 ~ar---~~l~~~~ 264 (292)
T PRK00089 255 EAR---KDIEKLL 264 (292)
T ss_pred HHH---HHHHHHh
Confidence 998 5555544
No 30
>PRK15494 era GTPase Era; Provisional
Probab=99.90 E-value=1.3e-23 Score=216.65 Aligned_cols=246 Identities=20% Similarity=0.251 Sum_probs=175.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
+...|+++|.|||||||+++.|. |.++++++. +..+|+..+. +..+
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~------~~k~~ivs~-----------k~~tTr~~~~--~~~~--------------- 96 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRII------GEKLSIVTP-----------KVQTTRSIIT--GIIT--------------- 96 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHh------CCceeeccC-----------CCCCccCcEE--EEEE---------------
Confidence 34579999999999999999999 999988887 5556654332 1111
Q ss_pred hccCCcEEEEeCCCCCchhHHHHHHHHHH--HHhcCCCEEEEEecCCCcccHHH--HHHHHhc-cCCeeEEEEeCccCCC
Q 011076 180 KKENCDLIIVDTSGRHKQEAALFEEMRQV--SEATNPDLVIFVMDSSIGQAAFD--QAQAFKQ-SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~~~l~~el~~i--~~~~~~d~vllVvDa~~g~~~~~--~~~~f~~-~~~i~~vVltK~D~~~ 254 (494)
.+++.++|+||||.+.....+...+.+. .....+|.++||+|+..+....+ ....+.. ..++ .+|+||+|...
T Consensus 97 -~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~-IlViNKiDl~~ 174 (339)
T PRK15494 97 -LKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVP-IFLLNKIDIES 174 (339)
T ss_pred -eCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCE-EEEEEhhcCcc
Confidence 1256889999999865443444433322 22457899999999876533332 2233332 2344 78999999853
Q ss_pred CccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC-------CCCCchHHHhhhhcch
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV-------PMDQQPELLQKLSEGN 327 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~-------~~~~~~~~~~~~~~~~ 327 (494)
+ ....+. +.+....++.+..++|++.|.| ++.|++.+.+.+ |++..++..+++...|
T Consensus 175 ~--~~~~~~-------------~~l~~~~~~~~i~~iSAktg~g-v~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~e 238 (339)
T PRK15494 175 K--YLNDIK-------------AFLTENHPDSLLFPISALSGKN-IDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAE 238 (339)
T ss_pred c--cHHHHH-------------HHHHhcCCCcEEEEEeccCccC-HHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHH
Confidence 3 122221 1112233455677899999999 999999999976 4677889999999999
Q ss_pred hhHHHHHHHHHHHhccCChhHHhhcCCCCCCccCcchhhhhh--HHhHHhHhHhhcCCCHHhhcCCCCCCc--chHHHHH
Q 011076 328 FTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKES--QAKIKRYMTMMDSMTNEELDSSNPKLM--NDSRIMR 403 (494)
Q Consensus 328 f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~~~~~~~~~~~--~~~~~~~~~ii~smt~~er~~~~~~~i--~~sr~~r 403 (494)
+++|.++..+++ +|||.. .+ .+ +.+. ++...+|.|.|. +||++||++|| +|+++|+
T Consensus 239 iiRe~~~~~~~~------------EiP~~~-~v--~i-~~~~~~~~~~~~i~~~i~----v~~~sqk~iiiG~~g~~ik~ 298 (339)
T PRK15494 239 ITREQLFLNLQK------------ELPYKL-TV--QT-EKWEDLKDKSVKINQVIV----VSRESYKTIILGKNGSKIKE 298 (339)
T ss_pred HHHHHHHhhCCc------------ccCceE-EE--EE-EEEEEcCCCeEEEEEEEE----ECCCCceeEEEcCCcHHHHH
Confidence 999999999999 999986 44 22 3332 223457999999 99999998888 7999999
Q ss_pred HHhhcCCCHHHHHHHHH
Q 011076 404 IARGSGRQVREVMEMLE 420 (494)
Q Consensus 404 Ia~gsg~~~~~v~~ll~ 420 (494)
|+..|. +|+++++.
T Consensus 299 i~~~ar---~~le~~~~ 312 (339)
T PRK15494 299 IGAKSR---MQMERFFG 312 (339)
T ss_pred HHHHHH---HHHHHHhC
Confidence 999998 67666654
No 31
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.83 E-value=4e-20 Score=192.37 Aligned_cols=233 Identities=20% Similarity=0.210 Sum_probs=170.6
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHHHhhc
Q 011076 8 GSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKML 87 (494)
Q Consensus 8 ~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL~~ll 87 (494)
...+.|+++++| .++..+.+|++.|++.-..+++..||.|+..+......+ ..-.+.+.++|.+++
T Consensus 140 ~a~r~A~~~l~G-------~ls~~i~~lr~~li~~~a~vEa~IDfpeedi~~~~~~~i-------~~~l~~~~~~l~~ll 205 (454)
T COG0486 140 QAARIALRQLQG-------ALSQLINELREALLELLAQVEANIDFPEEDIEELVLEKI-------REKLEELIAELDELL 205 (454)
T ss_pred HHHHHHHHHcCC-------cHHHHHHHHHHHHHHHHHHheEeCCCCcccccchhHHHH-------HHHHHHHHHHHHHHH
Confidence 467889999999 899999999999999999999999998872222222222 223466888999999
Q ss_pred CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCC
Q 011076 88 DPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESD 167 (494)
Q Consensus 88 ~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~d 167 (494)
........+++|- .++++|+|||||||++|.|+ ++..+||+. .+.+||+-++.+...
T Consensus 206 ~~~~~g~ilr~G~--kvvIiG~PNvGKSSLLNaL~------~~d~AIVTd-----------I~GTTRDviee~i~i---- 262 (454)
T COG0486 206 ATAKQGKILREGL--KVVIIGRPNVGKSSLLNALL------GRDRAIVTD-----------IAGTTRDVIEEDINL---- 262 (454)
T ss_pred HhhhhhhhhhcCc--eEEEECCCCCcHHHHHHHHh------cCCceEecC-----------CCCCccceEEEEEEE----
Confidence 8887777777765 59999999999999999999 999999999 889999988655432
Q ss_pred hHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHH--HHHHhcCCCEEEEEecCCCcccHHH--HHHHHhccCCee
Q 011076 168 PVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMR--QVSEATNPDLVIFVMDSSIGQAAFD--QAQAFKQSVSVG 243 (494)
Q Consensus 168 p~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~--~i~~~~~~d~vllVvDa~~g~~~~~--~~~~f~~~~~i~ 243 (494)
+++.+.|+||||....++...+.-. ....+..+|.+++|+|++...+..+ .........+ .
T Consensus 263 --------------~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~-~ 327 (454)
T COG0486 263 --------------NGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKP-I 327 (454)
T ss_pred --------------CCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCC-E
Confidence 4899999999999987766655432 3334557999999999997533222 2221222233 4
Q ss_pred EEEEeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 244 AVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 244 ~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
.+|+||.|....... +.+ .+..-.+...+|++.|.| ++.|.+++.+.+.
T Consensus 328 i~v~NK~DL~~~~~~------------------~~~-~~~~~~~~i~iSa~t~~G-l~~L~~~i~~~~~ 376 (454)
T COG0486 328 IVVLNKADLVSKIEL------------------ESE-KLANGDAIISISAKTGEG-LDALREAIKQLFG 376 (454)
T ss_pred EEEEechhccccccc------------------chh-hccCCCceEEEEecCccC-HHHHHHHHHHHHh
Confidence 999999999766321 111 112223456678888888 8888888877663
No 32
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=99.80 E-value=1.8e-18 Score=174.25 Aligned_cols=149 Identities=30% Similarity=0.351 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEE
Q 011076 28 LNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFV 107 (494)
Q Consensus 28 i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~lv 107 (494)
..+.+.+++..|+++||+.+++.++.+++.+.. +...+.+.+.+.|.+.+......... ...+.+|+|+
T Consensus 132 ~~~~l~~l~~~L~~~gv~~~la~~L~~~l~~~~----------~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~vi~~v 200 (282)
T TIGR03499 132 RDPEGAKLLERLLRAGVSPELARELLEKLPERA----------DAEDAWRWLREALEKMLPVKPEEDEI-LEQGGVIALV 200 (282)
T ss_pred cCHHHHHHHHHHHHCCCCHHHHHHHHHHhhccC----------CHHHHHHHHHHHHHHHhccCCccccc-cCCCeEEEEE
Confidence 456678999999999999999999999887531 22445678889999888732222211 1246799999
Q ss_pred cCCCCcHHHHHHHHHHHHHhc-C-CceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhccCCc
Q 011076 108 GLQGSGKTTTCTKYAYYHQKK-G-WKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCD 185 (494)
Q Consensus 108 G~~GvGKTTl~~kLA~~l~~~-g-~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~~~d 185 (494)
|++|||||||+.+||.++..+ | ++|++|++|+||.++++||..++...++|++... ++.++ ..++..+ .++|
T Consensus 201 GptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~---~~~~l-~~~l~~~--~~~d 274 (282)
T TIGR03499 201 GPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVAR---DPKEL-RKALDRL--RDKD 274 (282)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccC---CHHHH-HHHHHHc--cCCC
Confidence 999999999999999999876 5 9999999999999999999999999999986543 34333 4555555 3689
Q ss_pred EEEEeCCC
Q 011076 186 LIIVDTSG 193 (494)
Q Consensus 186 vIIIDTaG 193 (494)
+|||||||
T Consensus 275 ~vliDt~G 282 (282)
T TIGR03499 275 LILIDTAG 282 (282)
T ss_pred EEEEeCCC
Confidence 99999998
No 33
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.72 E-value=1.8e-16 Score=162.29 Aligned_cols=223 Identities=17% Similarity=0.168 Sum_probs=139.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc---hhH----HHHHhhhhccCcceecc---CCCCCh
Q 011076 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA---GAF----DQLKQNATKAKIPFYGS---YTESDP 168 (494)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~---~a~----~qLk~~~~~~~i~~~~~---~~~~dp 168 (494)
+++.+|.|+|+|||||||++..|+.+|...|++|++++.|+..+ ++. ..+.......++-+... .....+
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~ 133 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGV 133 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccch
Confidence 45789999999999999999999999999999999999998554 332 22333333223211111 112235
Q ss_pred HHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhccCCeeEEEEe
Q 011076 169 VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVT 248 (494)
Q Consensus 169 ~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~~i~~vVlt 248 (494)
...+.+++..+...+||+|||||+|..+.+... +..+|.+++|+++..|.+.........+.. +.+|+|
T Consensus 134 a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~i---------~~~aD~vlvv~~p~~gd~iq~~k~gi~E~a--DIiVVN 202 (332)
T PRK09435 134 ARKTRETMLLCEAAGYDVILVETVGVGQSETAV---------AGMVDFFLLLQLPGAGDELQGIKKGIMELA--DLIVIN 202 (332)
T ss_pred HHHHHHHHHHHhccCCCEEEEECCCCccchhHH---------HHhCCEEEEEecCCchHHHHHHHhhhhhhh--heEEee
Confidence 667788888888889999999999998654332 224799999988666654433222111111 489999
Q ss_pred CccCCCCccchhHHHHhcCCCeEEecccccccccccc-CccchhhcccCCCCchHHHHHHHHhC----CCCCchH---HH
Q 011076 249 KMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVF-DVKPFVSRLLGMGDWSGFMDKIHEVV----PMDQQPE---LL 320 (494)
Q Consensus 249 K~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f-~p~~~vs~~~G~Gdi~~L~e~i~~~~----~~~~~~~---~~ 320 (494)
|+|...+.+... .......-+.+.. .+...+ .|..++|+..|.| ++.|++.+.+++ +.+..++ ..
T Consensus 203 KaDl~~~~~a~~-~~~el~~~L~l~~-----~~~~~w~~pVi~vSA~~g~G-IdeL~~~I~~~~~~l~~sg~l~~~r~~~ 275 (332)
T PRK09435 203 KADGDNKTAARR-AAAEYRSALRLLR-----PKDPGWQPPVLTCSALEGEG-IDEIWQAIEDHRAALTASGEFAARRREQ 275 (332)
T ss_pred hhcccchhHHHH-HHHHHHHHHhccc-----ccccCCCCCEEEEECCCCCC-HHHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 999876543211 1110000000000 000112 4677899999999 999999999975 3333333 22
Q ss_pred hhhhcchhhHHHHHHHHHH
Q 011076 321 QKLSEGNFTLRIMYEQFQN 339 (494)
Q Consensus 321 ~~~~~~~f~~~d~~~ql~~ 339 (494)
.+..-.++..+.+++.+..
T Consensus 276 ~~~~v~elire~l~~~~~~ 294 (332)
T PRK09435 276 QVDWMWEMVEEGLLDRLFA 294 (332)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 2333346666677666655
No 34
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.70 E-value=2.3e-17 Score=162.65 Aligned_cols=261 Identities=16% Similarity=0.232 Sum_probs=162.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHH
Q 011076 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (494)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~ 178 (494)
.+.-.|+++|.|||||||++|.+. |.||+.|+. +..+|+..+ .++.+.
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mi------g~kv~~vS~-----------K~~TTr~~i--lgi~ts------------- 117 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMI------GQKVSAVSR-----------KVHTTRHRI--LGIITS------------- 117 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhh------CCccccccc-----------cccceeeee--eEEEec-------------
Confidence 445679999999999999999999 999999999 888998877 344442
Q ss_pred HhccCCcEEEEeCCCCCchh-----HHHHHHHHHHH-HhcCCCEEEEEecCCC--ccc---HHHHHHHHhccCCeeEEEE
Q 011076 179 FKKENCDLIIVDTSGRHKQE-----AALFEEMRQVS-EATNPDLVIFVMDSSI--GQA---AFDQAQAFKQSVSVGAVIV 247 (494)
Q Consensus 179 ~~~~~~dvIIIDTaG~~~~~-----~~l~~el~~i~-~~~~~d~vllVvDa~~--g~~---~~~~~~~f~~~~~i~~vVl 247 (494)
..+++|++||||..... ......+.... ++..+|.+++|+|++. .+- .++....+.. + +.++|+
T Consensus 118 ---~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~-i-ps~lvm 192 (379)
T KOG1423|consen 118 ---GETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSK-I-PSILVM 192 (379)
T ss_pred ---CceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhc-C-Cceeec
Confidence 46899999999985332 11112222222 2446899999999983 222 2223333322 2 258899
Q ss_pred eCccCCCCccchhHHHHh-cCCCeE--Eeccccccccc------------cccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 248 TKMDGHAKGGGALSAVAA-TKSPVI--FIGTGEHMDEF------------EVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 248 tK~D~~~~~g~~ls~~~~-~g~Pi~--fi~~Ge~i~~l------------~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
||+|.....--.+..... +.--+. -.-.-++..+. .-|...+++|++.|.| +++|-+.+-...+
T Consensus 193 nkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~G-ikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 193 NKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEG-IKDLKQYLMSQAP 271 (379)
T ss_pred cchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccC-HHHHHHHHHhcCC
Confidence 999986654333333221 110000 00000111111 1255678899999999 9999999887664
Q ss_pred -------CCCchHHHhhhhcchhhHHHHHHHHHHHhccCChhHHhhcCCCCCCccCcchhhhhhH--HhHHhHhHhhcCC
Q 011076 313 -------MDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQ--AKIKRYMTMMDSM 383 (494)
Q Consensus 313 -------~~~~~~~~~~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~~~~~~~~~~~~--~~~~~~~~ii~sm 383 (494)
.+-.++...++...+..++.+++++.| ++||-. ++ .+ ..+.+ ...-.|..=+ -
T Consensus 272 ~gpW~y~a~i~T~~s~e~l~~e~VReklLd~~pq------------EVPY~l-q~--~i-~~w~e~~~g~l~I~~~v--~ 333 (379)
T KOG1423|consen 272 PGPWKYPADIVTEESPEFLCSESVREKLLDHLPQ------------EVPYNL-QV--RI-LSWKERPAGVLFIQVEV--V 333 (379)
T ss_pred CCCCCCCcccccccCHHHHHHHHHHHHHHhhCcc------------ccCcce-EE--EE-EEeeecCCcEEEEEEEE--E
Confidence 222355667777889999999999999 999965 22 22 22221 1111111111 1
Q ss_pred CHHhhcCCCCCCc--chHHHHHHHhhcCCCHHHHHHHHH
Q 011076 384 TNEELDSSNPKLM--NDSRIMRIARGSGRQVREVMEMLE 420 (494)
Q Consensus 384 t~~er~~~~~~~i--~~sr~~rIa~gsg~~~~~v~~ll~ 420 (494)
+|++|.. ..+| +|.++++||+.++ .|+.+++.
T Consensus 334 ~pK~s~~--klliGkgG~ki~qI~~~a~---~dL~~if~ 367 (379)
T KOG1423|consen 334 CPKNSQK--KLLIGKGGKKISQIGTRAN---EDLEDIFQ 367 (379)
T ss_pred cCCCcce--eEEEcCCCccHHHHHHHHH---HHHHHHhh
Confidence 2333332 1233 6799999999999 66665543
No 35
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.68 E-value=6.1e-16 Score=160.95 Aligned_cols=156 Identities=22% Similarity=0.320 Sum_probs=115.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
.+|+++|+|||||||+.|.|+ |++++||+. .+..||+.+.-.. +.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~------g~r~AIV~D-----------~pGvTRDr~y~~~------------------~~ 48 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLT------GRRIAIVSD-----------TPGVTRDRIYGDA------------------EW 48 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHh------CCeeeEeec-----------CCCCccCCcccee------------------EE
Confidence 479999999999999999999 999999999 7788888773221 12
Q ss_pred cCCcEEEEeCCCCCchh-HHHHHHHHH--HHHhcCCCEEEEEecCCCcccHHH--HHHHHhccCCeeEEEEeCccCCCCc
Q 011076 182 ENCDLIIVDTSGRHKQE-AALFEEMRQ--VSEATNPDLVIFVMDSSIGQAAFD--QAQAFKQSVSVGAVIVTKMDGHAKG 256 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~-~~l~~el~~--i~~~~~~d~vllVvDa~~g~~~~~--~~~~f~~~~~i~~vVltK~D~~~~~ 256 (494)
.+..+.+|||+|....+ +.+.+++.. ..+..++|.++||+|+..|....+ .++.+...-.+..+|+||+|.....
T Consensus 49 ~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e 128 (444)
T COG1160 49 LGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAE 128 (444)
T ss_pred cCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhh
Confidence 36789999999998655 556666653 333557999999999998765444 5666665434559999999986221
Q ss_pred cchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 257 g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
......+..| |....++|+.+|.| +..|++++.+.+
T Consensus 129 -~~~~efyslG-----------------~g~~~~ISA~Hg~G-i~dLld~v~~~l 164 (444)
T COG1160 129 -ELAYEFYSLG-----------------FGEPVPISAEHGRG-IGDLLDAVLELL 164 (444)
T ss_pred -hhHHHHHhcC-----------------CCCceEeehhhccC-HHHHHHHHHhhc
Confidence 1111111111 23346799999999 999999999997
No 36
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.64 E-value=9.2e-16 Score=163.99 Aligned_cols=230 Identities=17% Similarity=0.182 Sum_probs=149.4
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHHHhh
Q 011076 7 GGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKM 86 (494)
Q Consensus 7 ~~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL~~l 86 (494)
...++.|+++|+| .++..+..|+..|++.-..+++..+|.++.........+ ..-+..+..+|.++
T Consensus 137 ~~~~~~al~~l~G-------~l~~~~~~~r~~l~~~~a~iea~iDf~ee~~~~~~~~~i-------~~~i~~l~~~l~~l 202 (449)
T PRK05291 137 EAAARLALRQLQG-------ALSKLINELREELLELLALVEAAIDFPEEDIEFLSDEKI-------LEKLEELIAELEAL 202 (449)
T ss_pred HHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHHHHheEEccCCCCCcccccHHHH-------HHHHHHHHHHHHHH
Confidence 3567889999999 899999999999999988888888887753222222222 22345677778777
Q ss_pred cCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCC
Q 011076 87 LDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTES 166 (494)
Q Consensus 87 l~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~ 166 (494)
+.........+. ...|+++|.|||||||++|.|. +.++++++. .+.++++-+.....
T Consensus 203 ~~~~~~~~~~~~--~~kV~ivG~~nvGKSSLln~L~------~~~~a~v~~-----------~~gtT~d~~~~~i~---- 259 (449)
T PRK05291 203 LASARQGEILRE--GLKVVIAGRPNVGKSSLLNALL------GEERAIVTD-----------IAGTTRDVIEEHIN---- 259 (449)
T ss_pred HHHHHHHHHhhc--CCEEEEECCCCCCHHHHHHHHh------CCCCcccCC-----------CCCcccccEEEEEE----
Confidence 765443333333 2469999999999999999999 877777765 23333332211110
Q ss_pred ChHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHH-HH-HHHHhcCCCEEEEEecCCCcccHHHHHHHHh--ccCCe
Q 011076 167 DPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEE-MR-QVSEATNPDLVIFVMDSSIGQAAFDQAQAFK--QSVSV 242 (494)
Q Consensus 167 dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~e-l~-~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~--~~~~i 242 (494)
..++.+.|+||||.....+....+ +. .......+|.+++|+|++......+ ...+. ...|+
T Consensus 260 --------------~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~-~~~l~~~~~~pi 324 (449)
T PRK05291 260 --------------LDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEED-DEILEELKDKPV 324 (449)
T ss_pred --------------ECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhH-HHHHHhcCCCCc
Confidence 135678999999986543322221 11 2234557899999999986543222 12222 22344
Q ss_pred eEEEEeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 243 GAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 243 ~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
.+|+||+|....... . .....+...+|++.|.| ++.|++++.+.+.
T Consensus 325 -iiV~NK~DL~~~~~~--~--------------------~~~~~~~i~iSAktg~G-I~~L~~~L~~~l~ 370 (449)
T PRK05291 325 -IVVLNKADLTGEIDL--E--------------------EENGKPVIRISAKTGEG-IDELREAIKELAF 370 (449)
T ss_pred -EEEEEhhhccccchh--h--------------------hccCCceEEEEeeCCCC-HHHHHHHHHHHHh
Confidence 899999998543110 0 01123456789999999 9999999988764
No 37
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.63 E-value=1.2e-14 Score=147.62 Aligned_cols=196 Identities=20% Similarity=0.191 Sum_probs=120.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhH-----H--HHHhhhhccCcceeccCCC---CCh
Q 011076 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-----D--QLKQNATKAKIPFYGSYTE---SDP 168 (494)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~-----~--qLk~~~~~~~i~~~~~~~~---~dp 168 (494)
+.+.+|.|+|+|||||||++.+|+.++.++|++|++++.|++.+... + .+.......++.+....+. ...
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGGL 111 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccch
Confidence 45678999999999999999999999999999999999998876421 1 1222222223322222211 112
Q ss_pred HHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhccCCeeEEEEe
Q 011076 169 VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVT 248 (494)
Q Consensus 169 ~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~~i~~vVlt 248 (494)
.....+++..+...+||+|||||||..+..... ...+|.+++|.++..+.+.......+.+ .+ ..+|+|
T Consensus 112 ~~~~~~~~~~l~~~g~D~viidT~G~~~~e~~i---------~~~aD~i~vv~~~~~~~el~~~~~~l~~-~~-~ivv~N 180 (300)
T TIGR00750 112 SQATRELILLLDAAGYDVIIVETVGVGQSEVDI---------ANMADTFVVVTIPGTGDDLQGIKAGLME-IA-DIYVVN 180 (300)
T ss_pred hHHHHHHHHHHHhCCCCEEEEeCCCCchhhhHH---------HHhhceEEEEecCCccHHHHHHHHHHhh-hc-cEEEEE
Confidence 234566677777789999999999987554322 1235777888776655544333333332 22 489999
Q ss_pred CccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 249 KMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 249 K~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
|+|......... ........+..+ .++... ...|..++|+..|.| ++.|++.+.+..
T Consensus 181 K~Dl~~~~~~~~-~~~~~~~~l~~l--~~~~~~--~~~~v~~iSA~~g~G-i~~L~~~i~~~~ 237 (300)
T TIGR00750 181 KADGEGATNVTI-ARLMLALALEEI--RRREDG--WRPPVLTTSAVEGRG-IDELWDAIEEHK 237 (300)
T ss_pred cccccchhHHHH-HHHHHHHHHhhc--cccccC--CCCCEEEEEccCCCC-HHHHHHHHHHHH
Confidence 999864432110 000000000000 011111 113567899999999 999999998864
No 38
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.62 E-value=9.9e-15 Score=144.54 Aligned_cols=195 Identities=21% Similarity=0.261 Sum_probs=130.3
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcch---hH--H--HHHhhhhccCcceeccCCCC--
Q 011076 96 PKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG---AF--D--QLKQNATKAKIPFYGSYTES-- 166 (494)
Q Consensus 96 ~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~---a~--~--qLk~~~~~~~i~~~~~~~~~-- 166 (494)
+..+++.+|.+.|.|||||||++-+|...|.++|++|++++.||..|- ++ | .+...+...++-+....+..
T Consensus 46 p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~l 125 (323)
T COG1703 46 PRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTL 125 (323)
T ss_pred hcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccc
Confidence 345778899999999999999999999999999999999999986653 32 3 33334444455333333322
Q ss_pred -ChHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhccCCeeEE
Q 011076 167 -DPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAV 245 (494)
Q Consensus 167 -dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~~i~~v 245 (494)
-...-..+++..++..+||+|||.|.|..+.+-+... -+|.+++|+-+..|.+..-.-.-..+- -+.+
T Consensus 126 GGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~---------~aDt~~~v~~pg~GD~~Q~iK~GimEi--aDi~ 194 (323)
T COG1703 126 GGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIAN---------MADTFLVVMIPGAGDDLQGIKAGIMEI--ADII 194 (323)
T ss_pred hhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhh---------hcceEEEEecCCCCcHHHHHHhhhhhh--hhee
Confidence 2345577778888888999999999999887644322 368888888887775543222222221 1689
Q ss_pred EEeCccCCCCccchhHH---HHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 246 IVTKMDGHAKGGGALSA---VAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 246 VltK~D~~~~~g~~ls~---~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
|+||.|. .|+...+ ...... .. +..++-....|.+-.|+..|.| +..|++++.++.
T Consensus 195 vINKaD~---~~A~~a~r~l~~al~~----~~--~~~~~~~W~ppv~~t~A~~g~G-i~~L~~ai~~h~ 253 (323)
T COG1703 195 VINKADR---KGAEKAARELRSALDL----LR--EVWRENGWRPPVVTTSALEGEG-IDELWDAIEDHR 253 (323)
T ss_pred eEeccCh---hhHHHHHHHHHHHHHh----hc--ccccccCCCCceeEeeeccCCC-HHHHHHHHHHHH
Confidence 9999993 2332221 111110 00 1122233345566689999999 999999999886
No 39
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.60 E-value=1.8e-15 Score=147.91 Aligned_cols=193 Identities=19% Similarity=0.205 Sum_probs=115.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc---hh----HHHHHhhhhccCcceeccCCCCCh---
Q 011076 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA---GA----FDQLKQNATKAKIPFYGSYTESDP--- 168 (494)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~---~a----~~qLk~~~~~~~i~~~~~~~~~dp--- 168 (494)
++..+|.|+|+||+||||++..|+.+|.++|++|++++.||-.| || .-.+...+...++-+....+....
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 45789999999999999999999999999999999999998554 33 223344455555544444444443
Q ss_pred HHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhccCCeeEEEEe
Q 011076 169 VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVT 248 (494)
Q Consensus 169 ~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~~i~~vVlt 248 (494)
...+.+++..++..+||+|||.|.|..+.+-+. +--+|.+++|+-+..|.+..-.-.-.-+. .+++|+|
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I---------~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--aDi~vVN 175 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEVDI---------ADMADTVVLVLVPGLGDEIQAIKAGIMEI--ADIFVVN 175 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHH---------HTTSSEEEEEEESSTCCCCCTB-TTHHHH---SEEEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHH---------HHhcCeEEEEecCCCccHHHHHhhhhhhh--ccEEEEe
Confidence 334666777778889999999999998765332 22479999999988886532111111111 2589999
Q ss_pred CccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 249 KMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 249 K~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
|.|..........+..... + .... .-....|...+|+..|.| +++|++.+.++.
T Consensus 176 KaD~~gA~~~~~~l~~~l~----l---~~~~-~~~W~ppV~~tsA~~~~G-i~eL~~~i~~~~ 229 (266)
T PF03308_consen 176 KADRPGADRTVRDLRSMLH----L---LRER-EDGWRPPVLKTSALEGEG-IDELWEAIDEHR 229 (266)
T ss_dssp --SHHHHHHHHHHHHHHHH----H---CSTS-CTSB--EEEEEBTTTTBS-HHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHh----h---cccc-ccCCCCCEEEEEeCCCCC-HHHHHHHHHHHH
Confidence 9993211111111111000 0 0000 111234667789999999 999999998875
No 40
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.58 E-value=1.2e-14 Score=151.32 Aligned_cols=187 Identities=18% Similarity=0.307 Sum_probs=128.3
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccC
Q 011076 77 QAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAK 156 (494)
Q Consensus 77 ~~v~~eL~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~ 156 (494)
..+.+++.+.+.............+..|+++|.|||||||++|+|. |...+||+. .+.+|++.
T Consensus 154 ~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~il------geeR~Iv~~-----------~aGTTRD~ 216 (444)
T COG1160 154 GDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAIL------GEERVIVSD-----------IAGTTRDS 216 (444)
T ss_pred HHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhc------cCceEEecC-----------CCCccccc
Confidence 4577777777741111111111246789999999999999999999 999999999 88889888
Q ss_pred cceeccCCCCChHHHHHHHHHHHhccCCcEEEEeCCCCCchh---H--HHHHHHHHHHHhcCCCEEEEEecCCCcccHHH
Q 011076 157 IPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQE---A--ALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD 231 (494)
Q Consensus 157 i~~~~~~~~~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~---~--~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~ 231 (494)
|.....+ ++..|++|||||..... + +.+.-.+.+.+...++.+++|+|++.+....+
T Consensus 217 I~~~~e~------------------~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD 278 (444)
T COG1160 217 IDIEFER------------------DGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQD 278 (444)
T ss_pred eeeeEEE------------------CCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHH
Confidence 7543322 36788999999985432 1 12222334455557899999999998755443
Q ss_pred --HHHHHhccCCeeEEEEeCccCCCCccchhHHHHhcCCCeEEeccccccc---cccccCccchhhcccCCCCchHHHHH
Q 011076 232 --QAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMD---EFEVFDVKPFVSRLLGMGDWSGFMDK 306 (494)
Q Consensus 232 --~~~~f~~~~~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~---~l~~f~p~~~vs~~~G~Gdi~~L~e~ 306 (494)
.+....+.-....+|+||||+............ +.+. .+-.|.|..|+|++.|.| +..|++.
T Consensus 279 ~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k------------~~i~~~l~~l~~a~i~~iSA~~~~~-i~~l~~~ 345 (444)
T COG1160 279 LRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFK------------KKLRRKLPFLDFAPIVFISALTGQG-LDKLFEA 345 (444)
T ss_pred HHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHH------------HHHHHHhccccCCeEEEEEecCCCC-hHHHHHH
Confidence 333333333344899999999765323332222 2221 234578999999999999 9999999
Q ss_pred HHHhC
Q 011076 307 IHEVV 311 (494)
Q Consensus 307 i~~~~ 311 (494)
+.+..
T Consensus 346 i~~~~ 350 (444)
T COG1160 346 IKEIY 350 (444)
T ss_pred HHHHH
Confidence 98876
No 41
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.6e-14 Score=150.59 Aligned_cols=243 Identities=14% Similarity=0.147 Sum_probs=159.3
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHHHhhc
Q 011076 8 GSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKML 87 (494)
Q Consensus 8 ~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL~~ll 87 (494)
.....|+..+.| .+......|+..|+++...++...+|-+...-... +-+ +-.. -...+.+++...+
T Consensus 190 ~q~~~Al~~v~g-------~~~~l~~~~r~~lIe~~a~l~a~idf~e~~~l~~~-~t~-~~~~----~~~~l~d~v~s~l 256 (531)
T KOG1191|consen 190 SQRRAALDEVAG-------EALALCFGWRKILIEALAGLEARIDFEEERPLEEI-ETV-EIFI----ESLSLLDDVLSHL 256 (531)
T ss_pred hhhhhhhhhhcc-------hhHHhhhhHHHHHHHHHhccceeechhhcCchhhc-cch-hhhh----HHHHHHHHHHHHH
Confidence 344566677766 33344455899999999999999999664222111 100 0000 0122456777776
Q ss_pred CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCC
Q 011076 88 DPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESD 167 (494)
Q Consensus 88 ~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~d 167 (494)
........+..+. -|+++|+|||||||++|.|+ ...++||+. .+.+||+-++.....
T Consensus 257 ~~~~~~e~lq~gl--~iaIvGrPNvGKSSLlNaL~------~~drsIVSp-----------v~GTTRDaiea~v~~---- 313 (531)
T KOG1191|consen 257 NKADEIERLQSGL--QIAIVGRPNVGKSSLLNALS------REDRSIVSP-----------VPGTTRDAIEAQVTV---- 313 (531)
T ss_pred HhhhhHHHhhcCC--eEEEEcCCCCCHHHHHHHHh------cCCceEeCC-----------CCCcchhhheeEeec----
Confidence 6555444444443 59999999999999999999 899999999 888999888654321
Q ss_pred hHHHHHHHHHHHhccCCcEEEEeCCCCCc-hhHHHHHH--HHHHHHhcCCCEEEEEecCCCcc--cHHHHHHHHhc---c
Q 011076 168 PVRIAVEGVETFKKENCDLIIVDTSGRHK-QEAALFEE--MRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQ---S 239 (494)
Q Consensus 168 p~~i~~~~l~~~~~~~~dvIIIDTaG~~~-~~~~l~~e--l~~i~~~~~~d~vllVvDa~~g~--~~~~~~~~f~~---~ 239 (494)
+++.+.|+||||+.+ .++..... .+.-.++..+|.+++|+|+..+. ....+++.+.. .
T Consensus 314 --------------~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g 379 (531)
T KOG1191|consen 314 --------------NGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVG 379 (531)
T ss_pred --------------CCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccc
Confidence 489999999999987 22222221 22334456799999999995433 22222332221 1
Q ss_pred C---------CeeEEEEeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 240 V---------SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 240 ~---------~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
+ ...+++.||.|...+. ...++.|+.|.+. +.. ..|.+..++|+.++.| ++.|.+.+.+.
T Consensus 380 ~~~~~~~~~~~~~i~~~nk~D~~s~~------~~~~~~~~~~~~~-~~~---~~~~i~~~vs~~tkeg-~~~L~~all~~ 448 (531)
T KOG1191|consen 380 LVVIVNKMEKQRIILVANKSDLVSKI------PEMTKIPVVYPSA-EGR---SVFPIVVEVSCTTKEG-CERLSTALLNI 448 (531)
T ss_pred eEEEeccccccceEEEechhhccCcc------ccccCCceecccc-ccC---cccceEEEeeechhhh-HHHHHHHHHHH
Confidence 1 1236788999987653 2346778888875 332 3456667799999999 99999888776
Q ss_pred C
Q 011076 311 V 311 (494)
Q Consensus 311 ~ 311 (494)
+
T Consensus 449 ~ 449 (531)
T KOG1191|consen 449 V 449 (531)
T ss_pred H
Confidence 5
No 42
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.56 E-value=5e-14 Score=146.11 Aligned_cols=230 Identities=17% Similarity=0.175 Sum_probs=126.9
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHHHhhc
Q 011076 8 GSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKML 87 (494)
Q Consensus 8 ~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL~~ll 87 (494)
.+|+.++.+|.+ .++..+..++. |......+.+ .+.++-........+ ..-+..+.++|.++.
T Consensus 112 ~klqv~la~l~~-------~l~r~~~~~~~-l~~~~~~i~~--~g~gE~~~~~~~~~i-------~~ri~~l~~~L~~~~ 174 (351)
T TIGR03156 112 GKLQVELAQLKY-------LLPRLVGGWTH-LSRQGGGIGT--RGPGETQLETDRRLI-------RERIAQLKKELEKVE 174 (351)
T ss_pred HHHHHHHHhccc-------hhhhhhhhHHH-HHhhcCCCCC--CCCChhHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 478888888888 56666666665 5554443332 111110000111111 122455667777666
Q ss_pred CCCCCCCCCC-CCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCC
Q 011076 88 DPGKPSFTPK-KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTES 166 (494)
Q Consensus 88 ~~~~~~~~~~-~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~ 166 (494)
.........+ ......|+++|.|||||||++|+|+ +.+ .+++. ..++|++-..-.....
T Consensus 175 ~~~~~~r~~r~~~~~~~ValvG~~NvGKSSLln~L~------~~~-~~v~~-----------~~~tT~d~~~~~i~~~-- 234 (351)
T TIGR03156 175 KQRERQRRRRKRADVPTVALVGYTNAGKSTLFNALT------GAD-VYAAD-----------QLFATLDPTTRRLDLP-- 234 (351)
T ss_pred HHHHHHHhhhcccCCcEEEEECCCCCCHHHHHHHHh------CCc-eeecc-----------CCccccCCEEEEEEeC--
Confidence 5432221121 1122469999999999999999999 766 34443 2233332211000000
Q ss_pred ChHHHHHHHHHHHhccCCcEEEEeCCCCCc-hhHHHHHHHHH-HHHhcCCCEEEEEecCCCcccHH------HHHHHHhc
Q 011076 167 DPVRIAVEGVETFKKENCDLIIVDTSGRHK-QEAALFEEMRQ-VSEATNPDLVIFVMDSSIGQAAF------DQAQAFKQ 238 (494)
Q Consensus 167 dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~-~~~~l~~el~~-i~~~~~~d~vllVvDa~~g~~~~------~~~~~f~~ 238 (494)
.+..+.|+||||... ....+.+.... +..+..+|.+++|+|++...... +....+..
T Consensus 235 ---------------~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~ 299 (351)
T TIGR03156 235 ---------------DGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGA 299 (351)
T ss_pred ---------------CCceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhcc
Confidence 246789999999832 23334343332 23355789999999998643221 11222221
Q ss_pred cCCeeEEEEeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 239 SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 239 ~~~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
.-.+..+|+||+|..... ...... ..+.+..++|+..|.| ++.|++.+.+.
T Consensus 300 ~~~piIlV~NK~Dl~~~~--~v~~~~------------------~~~~~~i~iSAktg~G-I~eL~~~I~~~ 350 (351)
T TIGR03156 300 EDIPQLLVYNKIDLLDEP--RIERLE------------------EGYPEAVFVSAKTGEG-LDLLLEAIAER 350 (351)
T ss_pred CCCCEEEEEEeecCCChH--hHHHHH------------------hCCCCEEEEEccCCCC-HHHHHHHHHhh
Confidence 112348999999985431 111110 1122457799999999 99999988664
No 43
>PRK13768 GTPase; Provisional
Probab=99.55 E-value=8.6e-14 Score=138.15 Aligned_cols=210 Identities=18% Similarity=0.181 Sum_probs=115.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchh-------HHH---HHhhhhccCc-ceec-cCCCCCh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-------FDQ---LKQNATKAKI-PFYG-SYTESDP 168 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a-------~~q---Lk~~~~~~~i-~~~~-~~~~~dp 168 (494)
+.+++++|++||||||++..++.+++.+|++|++|+.|+..... +.. +.......++ |-.. .....-.
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~~~~ 81 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDLL 81 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHHHHH
Confidence 35789999999999999999999999999999999999853210 001 1110001111 0000 0000000
Q ss_pred HHHHHHHHHHHhccCCcEEEEeCCCCCchh--HHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHH--HHHH------hc
Q 011076 169 VRIAVEGVETFKKENCDLIIVDTSGRHKQE--AALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ--AQAF------KQ 238 (494)
Q Consensus 169 ~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~--~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~--~~~f------~~ 238 (494)
..........+...+.|++|+||||..+.. ......+.+......++.+++|+|+..+....+. ...+ ..
T Consensus 82 ~~~~~~l~~~l~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~ 161 (253)
T PRK13768 82 LTKADEIKEEIESLDADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRL 161 (253)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHc
Confidence 011123334455556799999999986532 2222222222221228899999999765433321 1111 22
Q ss_pred cCCeeEEEEeCccCCCCccchhHHHHhcCCCeEEec---------------cccccccccccCccchhhcccCCCCchHH
Q 011076 239 SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIG---------------TGEHMDEFEVFDVKPFVSRLLGMGDWSGF 303 (494)
Q Consensus 239 ~~~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~---------------~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L 303 (494)
..++ .+|+||+|........ ........|-.+.. ..+.+.++.++.+..++|+..+.| ++.|
T Consensus 162 ~~~~-i~v~nK~D~~~~~~~~-~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~g-l~~L 238 (253)
T PRK13768 162 GLPQ-IPVLNKADLLSEEELE-RILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEG-FDEL 238 (253)
T ss_pred CCCE-EEEEEhHhhcCchhHH-HHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcC-HHHH
Confidence 3444 8999999987553211 11110000000000 001122334455667899999999 9999
Q ss_pred HHHHHHhCCC
Q 011076 304 MDKIHEVVPM 313 (494)
Q Consensus 304 ~e~i~~~~~~ 313 (494)
++.+.+.++.
T Consensus 239 ~~~I~~~l~~ 248 (253)
T PRK13768 239 YAAIQEVFCG 248 (253)
T ss_pred HHHHHHHcCC
Confidence 9999998863
No 44
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.55 E-value=2.9e-14 Score=133.63 Aligned_cols=181 Identities=20% Similarity=0.240 Sum_probs=136.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCC-CC--hHHHHHHHHHH
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE-SD--PVRIAVEGVET 178 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~-~d--p~~i~~~~l~~ 178 (494)
..|-+.|+|||||||++-++...|+++ +++++|..|.|.....+.+... .++++.+..+. .+ +......++++
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~---~g~~i~~v~TG~~CH~da~m~~~ai~~ 89 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRLRKL---PGEPIIGVETGKGCHLDASMNLEAIEE 89 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeechhhHHHHHhC---CCCeeEEeccCCccCCcHHHHHHHHHH
Confidence 678999999999999999999999987 9999999999987776666653 66666766665 44 77778888888
Q ss_pred Hhcc--CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhccCCeeEEEEeCccCCCCc
Q 011076 179 FKKE--NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKG 256 (494)
Q Consensus 179 ~~~~--~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~~i~~vVltK~D~~~~~ 256 (494)
+... ..|++||.+.|-+... ..--+..+..++|+|.+.|.+.....-- --..-+.+|+||.|..+..
T Consensus 90 l~~~~~~~Dll~iEs~GNL~~~---------~sp~L~d~~~v~VidvteGe~~P~K~gP--~i~~aDllVInK~DLa~~v 158 (202)
T COG0378 90 LVLDFPDLDLLFIESVGNLVCP---------FSPDLGDHLRVVVIDVTEGEDIPRKGGP--GIFKADLLVINKTDLAPYV 158 (202)
T ss_pred HhhcCCcCCEEEEecCcceecc---------cCcchhhceEEEEEECCCCCCCcccCCC--ceeEeeEEEEehHHhHHHh
Confidence 8654 3699999999932111 0001123478999999988765431000 0011368999999999888
Q ss_pred cchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 257 g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
|.-+++.. +......|-.|..++|.+.|.| ++.+++.+...
T Consensus 159 ~~dlevm~------------~da~~~np~~~ii~~n~ktg~G-~~~~~~~i~~~ 199 (202)
T COG0378 159 GADLEVMA------------RDAKEVNPEAPIIFTNLKTGEG-LDEWLRFIEPQ 199 (202)
T ss_pred CccHHHHH------------HHHHHhCCCCCEEEEeCCCCcC-HHHHHHHHHhh
Confidence 88788776 5666778888889999999999 99998887654
No 45
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.55 E-value=7.1e-15 Score=135.13 Aligned_cols=150 Identities=23% Similarity=0.194 Sum_probs=89.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|.|||||||++|+|. |.++.+ +. .+..|..... +.. ...
T Consensus 2 ~ialvG~PNvGKStLfN~Lt------g~~~~v-~n-----------~pG~Tv~~~~--g~~----------------~~~ 45 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALT------GAKQKV-GN-----------WPGTTVEKKE--GIF----------------KLG 45 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHH------TTSEEE-EE-----------STTSSSEEEE--EEE----------------EET
T ss_pred EEEEECCCCCCHHHHHHHHH------CCCcee-cC-----------CCCCCeeeee--EEE----------------Eec
Confidence 48999999999999999999 999554 44 2333332211 100 112
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHH--HHHHhcCCCEEEEEecCCCcccHHHHHHHHhccCCeeEEEEeCccCCCCccchh
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMR--QVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGAL 260 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~--~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~~i~~vVltK~D~~~~~g~~l 260 (494)
+.++.||||||.+.......+|.. .......+|.+++|+|++.-.........+.+.-.+..+|+||+|...+.|..+
T Consensus 46 ~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~i 125 (156)
T PF02421_consen 46 DQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEI 125 (156)
T ss_dssp TEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE
T ss_pred CceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEE
Confidence 578999999997543322222221 222245799999999998655444444444443233499999999987766544
Q ss_pred H---HHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHH
Q 011076 261 S---AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKI 307 (494)
Q Consensus 261 s---~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i 307 (494)
. +....|. |..++|+..|.| +++|.++|
T Consensus 126 d~~~Ls~~Lg~------------------pvi~~sa~~~~g-~~~L~~~I 156 (156)
T PF02421_consen 126 DAEKLSERLGV------------------PVIPVSARTGEG-IDELKDAI 156 (156)
T ss_dssp -HHHHHHHHTS-------------------EEEEBTTTTBT-HHHHHHHH
T ss_pred CHHHHHHHhCC------------------CEEEEEeCCCcC-HHHHHhhC
Confidence 3 2222343 455667777777 77766654
No 46
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.54 E-value=5.4e-14 Score=149.96 Aligned_cols=193 Identities=17% Similarity=0.191 Sum_probs=125.2
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHHHhh
Q 011076 7 GGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKM 86 (494)
Q Consensus 7 ~~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL~~l 86 (494)
....+.|+++++| .++..+..||..|++.-..+++..||.|+.... ..+ ..-.+.+..+|.++
T Consensus 129 ~~~~~~A~~~l~G-------~ls~~~~~~r~~l~~~~a~iea~iDf~ee~~~~---~~~-------~~~l~~~~~~l~~l 191 (442)
T TIGR00450 129 NKVKDIALNKLAG-------ELDQKIEAIRKSLLQLLAQVEVNIDYEEDDDEQ---DSL-------NQLLLSIIAELKDI 191 (442)
T ss_pred HHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHHHHeeEECCcCCCCccH---HHH-------HHHHHHHHHHHHHH
Confidence 3567889999999 899999999999999999999999998752110 111 12245566777777
Q ss_pred cCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCC
Q 011076 87 LDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTES 166 (494)
Q Consensus 87 l~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~ 166 (494)
+... ....... +..|+++|+|||||||++|.|. +...++|+. .+.+++.-+.....
T Consensus 192 l~~~-~~~~~~~--g~kVvIvG~~nvGKSSLiN~L~------~~~~aivs~-----------~pgtTrd~~~~~i~---- 247 (442)
T TIGR00450 192 LNSY-KLEKLDD--GFKLAIVGSPNVGKSSLLNALL------KQDRAIVSD-----------IKGTTRDVVEGDFE---- 247 (442)
T ss_pred HHHH-HHHHhhc--CCEEEEECCCCCcHHHHHHHHh------CCCCcccCC-----------CCCcEEEEEEEEEE----
Confidence 7655 2222222 3469999999999999999999 776666665 33344432211110
Q ss_pred ChHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHH-HH-HHHHhcCCCEEEEEecCCCcccHHH-HHHHHhc-cCCe
Q 011076 167 DPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEE-MR-QVSEATNPDLVIFVMDSSIGQAAFD-QAQAFKQ-SVSV 242 (494)
Q Consensus 167 dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~e-l~-~i~~~~~~d~vllVvDa~~g~~~~~-~~~~f~~-~~~i 242 (494)
.+++.+.|+||||.....+..... +. .......+|.+++|+|++.+....+ ....+.. ..|+
T Consensus 248 --------------~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~pi 313 (442)
T TIGR00450 248 --------------LNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPF 313 (442)
T ss_pred --------------ECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCE
Confidence 135678999999986544322211 11 2233457899999999986543222 2222222 2344
Q ss_pred eEEEEeCccCCCC
Q 011076 243 GAVIVTKMDGHAK 255 (494)
Q Consensus 243 ~~vVltK~D~~~~ 255 (494)
.+|+||+|....
T Consensus 314 -IlV~NK~Dl~~~ 325 (442)
T TIGR00450 314 -ILVLNKIDLKIN 325 (442)
T ss_pred -EEEEECccCCCc
Confidence 899999998543
No 47
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.52 E-value=2.4e-13 Score=122.58 Aligned_cols=160 Identities=27% Similarity=0.345 Sum_probs=99.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
+.+|+++|++||||||+++.++ |.+++.+..++. +++...... ..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~------~~~~~~~~~~~~-----------~~~~~~~~~--~~---------------- 47 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALV------GQKISIVSPKPQ-----------TTRNRIRGI--YT---------------- 47 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHh------CCceEeccCCCC-----------ceeceEEEE--EE----------------
Confidence 4579999999999999999999 888887766332 111111100 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHH--HHHhcCCCEEEEEecCCCc--ccHHHHHHHHhcc-CCeeEEEEeCccCCCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQ--VSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQS-VSVGAVIVTKMDGHAK 255 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~--i~~~~~~d~vllVvDa~~g--~~~~~~~~~f~~~-~~i~~vVltK~D~~~~ 255 (494)
..+++++++||||...........+.. ......+|.+++|+|++.. +........+... .++ .+|+||+|....
T Consensus 48 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~-iiv~nK~Dl~~~ 126 (168)
T cd04163 48 DDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPV-ILVLNKIDLVKD 126 (168)
T ss_pred cCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCE-EEEEEchhcccc
Confidence 125789999999987544332222211 1224467999999999865 2222233333332 344 899999998633
Q ss_pred ccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
........ +.+....++.+...+|+..+.| ++.|++.+.+.
T Consensus 127 ~~~~~~~~-------------~~~~~~~~~~~~~~~s~~~~~~-~~~l~~~l~~~ 167 (168)
T cd04163 127 KEDLLPLL-------------EKLKELGPFAEIFPISALKGEN-VDELLEEIVKY 167 (168)
T ss_pred HHHHHHHH-------------HHHHhccCCCceEEEEeccCCC-hHHHHHHHHhh
Confidence 22222222 1222223345667789999999 99999988764
No 48
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.48 E-value=8.7e-13 Score=126.88 Aligned_cols=182 Identities=16% Similarity=0.194 Sum_probs=113.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCC---CChHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE---SDPVRIAVEGV 176 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~---~dp~~i~~~~l 176 (494)
.+.+|.|+|++||||||++++++..+.. +++|+++..|++...+.++++.... ++.....+ .........++
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~-~~~v~v~~~~~~~~~D~~~~~~~~~----~~~~l~~gcic~~~~~~~~~~l 95 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKD-EVKIAVIEGDVITKFDAERLRKYGA----PAIQINTGKECHLDAHMVAHAL 95 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhc-CCeEEEEECCCCCcccHHHHHHcCC----cEEEEcCCCcccCChHHHHHHH
Confidence 3678999999999999999999987754 6799999999876555566654332 22211111 11122233556
Q ss_pred HHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH-HHHHHhccCCeeEEEEeCccCCCC
Q 011076 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD-QAQAFKQSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 177 ~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~-~~~~f~~~~~i~~vVltK~D~~~~ 255 (494)
..+...++|+|||+|.|.......+ ....+..+.|+|+..+..... ....+.. ...+|+||+|....
T Consensus 96 ~~~~~~~~d~IiIEt~G~l~~~~~~---------~~~~~~~i~Vvd~~~~d~~~~~~~~~~~~---a~iiv~NK~Dl~~~ 163 (207)
T TIGR00073 96 EDLPLDDIDLLFIENVGNLVCPADF---------DLGEHMRVVLLSVTEGDDKPLKYPGMFKE---ADLIVINKADLAEA 163 (207)
T ss_pred HHhccCCCCEEEEecCCCcCCCccc---------ccccCeEEEEEecCcccchhhhhHhHHhh---CCEEEEEHHHcccc
Confidence 5555457899999999943211110 123456678999876543322 2222221 24899999998643
Q ss_pred ccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
......... +.+..+.+..|...+|++.|.| ++.+++++.+..
T Consensus 164 ~~~~~~~~~------------~~l~~~~~~~~i~~~Sa~~g~g-v~~l~~~i~~~~ 206 (207)
T TIGR00073 164 VGFDVEKMK------------ADAKKINPEAEIILMSLKTGEG-LDEWLEFLEGQV 206 (207)
T ss_pred chhhHHHHH------------HHHHHhCCCCCEEEEECCCCCC-HHHHHHHHHHhh
Confidence 211111111 1222334556778899999999 999999987653
No 49
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.48 E-value=2.1e-13 Score=143.18 Aligned_cols=180 Identities=11% Similarity=0.064 Sum_probs=110.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
-|+|||+|||||||++|+|+ +.++ .|+. .+++|+.-+....... .
T Consensus 161 dValVG~PNaGKSTLln~Lt------~~k~-~vs~-----------~p~TT~~p~~Giv~~~-----------------~ 205 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVS------AAKP-KVAD-----------YPFTTLVPNLGVVRVD-----------------D 205 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHh------CCcc-cccC-----------CCCCccCcEEEEEEeC-----------------C
Confidence 48999999999999999999 7776 6666 5667765442221111 1
Q ss_pred CCcEEEEeCCCCCchhH---HHHHHHHHHHHhcCCCEEEEEecCCCc--ccHH----HHHHHHhc---c--CCeeEEEEe
Q 011076 183 NCDLIIVDTSGRHKQEA---ALFEEMRQVSEATNPDLVIFVMDSSIG--QAAF----DQAQAFKQ---S--VSVGAVIVT 248 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~---~l~~el~~i~~~~~~d~vllVvDa~~g--~~~~----~~~~~f~~---~--~~i~~vVlt 248 (494)
...++|+||||.+.... .+...+. .....++.+++|+|++.. .+.. .....+.. . -.+..+|+|
T Consensus 206 ~~~i~~vDtPGi~~~a~~~~~Lg~~~l--~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlN 283 (390)
T PRK12298 206 ERSFVVADIPGLIEGASEGAGLGIRFL--KHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFN 283 (390)
T ss_pred CcEEEEEeCCCccccccchhhHHHHHH--HHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEe
Confidence 23589999999975321 2322221 234467999999998621 1111 11222221 1 133589999
Q ss_pred CccCCCCccchhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHHhCC-------CCCchHHH
Q 011076 249 KMDGHAKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP-------MDQQPELL 320 (494)
Q Consensus 249 K~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~-------~~~~~~~~ 320 (494)
|+|...+. ....... .+ ..+....+..++|+..+.| ++.|++.+.+.++ +++.++..
T Consensus 284 KiDl~~~~-el~~~l~-------------~l~~~~~~~~~Vi~ISA~tg~G-IdeLl~~I~~~L~~~~~~~~~~~~td~~ 348 (390)
T PRK12298 284 KIDLLDEE-EAEERAK-------------AIVEALGWEGPVYLISAASGLG-VKELCWDLMTFIEENPREEAEEAEAPEK 348 (390)
T ss_pred CCccCChH-HHHHHHH-------------HHHHHhCCCCCEEEEECCCCcC-HHHHHHHHHHHhhhCcccCCcccccCcc
Confidence 99985432 1111111 11 1111112567899999999 9999999988774 34455666
Q ss_pred hhhhcchhhHHHHH
Q 011076 321 QKLSEGNFTLRIMY 334 (494)
Q Consensus 321 ~~~~~~~f~~~d~~ 334 (494)
+++...|+++|.+.
T Consensus 349 ~~~~~~EiiRE~~~ 362 (390)
T PRK12298 349 VEFMWDDYHREQLE 362 (390)
T ss_pred HHHHHHHHHHHHhh
Confidence 77777777777664
No 50
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.44 E-value=1.6e-12 Score=118.81 Aligned_cols=136 Identities=23% Similarity=0.279 Sum_probs=86.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHH-------HHhhhhccCcceeccCC---CCChHHHH
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQ-------LKQNATKAKIPFYGSYT---ESDPVRIA 172 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~q-------Lk~~~~~~~i~~~~~~~---~~dp~~i~ 172 (494)
++.++|++||||||++.+++.++...|++|.++++|+..+..... +.......++.+..... ..++....
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRAT 80 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCCCceEEEcCCcCcccccchhH
Confidence 378999999999999999999999999999999999865433111 11111111221111111 12233445
Q ss_pred HHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHH--HHHHhccCCeeEEEEeCc
Q 011076 173 VEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ--AQAFKQSVSVGAVIVTKM 250 (494)
Q Consensus 173 ~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~--~~~f~~~~~i~~vVltK~ 250 (494)
.+.++.++..+||+|||||||+.+... .....+|.+++|+.+..+. +... ...|.. -+.+++||+
T Consensus 81 ~~~~~~~~~~~~D~iiIDtaG~~~~~~---------~~~~~Ad~~ivv~tpe~~D-~y~~~k~~~~~~---~~~~~~~k~ 147 (148)
T cd03114 81 PEVIRVLDAAGFDVIIVETVGVGQSEV---------DIASMADTTVVVMAPGAGD-DIQAIKAGIMEI---ADIVVVNKA 147 (148)
T ss_pred HHHHHHHHhcCCCEEEEECCccChhhh---------hHHHhCCEEEEEECCCchh-HHHHhhhhHhhh---cCEEEEeCC
Confidence 556666666789999999999874321 1233579999999887432 2222 223332 258999999
Q ss_pred c
Q 011076 251 D 251 (494)
Q Consensus 251 D 251 (494)
|
T Consensus 148 ~ 148 (148)
T cd03114 148 D 148 (148)
T ss_pred C
Confidence 8
No 51
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.39 E-value=4.9e-12 Score=134.40 Aligned_cols=157 Identities=23% Similarity=0.331 Sum_probs=101.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
+|+++|.|||||||++|.|. +.+.++++. .+..++........ ..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~------~~~~~~v~~-----------~~g~t~d~~~~~~~------------------~~ 45 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLT------GKRDAIVSD-----------TPGVTRDRKYGDAE------------------WG 45 (429)
T ss_pred CEEEECCCCCCHHHHHHHHh------CCCcceecC-----------CCCcccCceEEEEE------------------EC
Confidence 38999999999999999999 878777776 22333333221111 12
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHH--HHhcCCCEEEEEecCCCcccHHH--HHHHHhccCCeeEEEEeCccCCCCccc
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQV--SEATNPDLVIFVMDSSIGQAAFD--QAQAFKQSVSVGAVIVTKMDGHAKGGG 258 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i--~~~~~~d~vllVvDa~~g~~~~~--~~~~f~~~~~i~~vVltK~D~~~~~g~ 258 (494)
+..+.|+||||.......+.+++... .....+|.+++|+|+..+....+ .+..+.+.-.+..+|+||+|.......
T Consensus 46 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~ 125 (429)
T TIGR03594 46 GREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAV 125 (429)
T ss_pred CeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccccc
Confidence 55689999999865444444444322 22346899999999987644332 344443332234899999998643221
Q ss_pred hhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCCC
Q 011076 259 ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (494)
Q Consensus 259 ~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~ 313 (494)
... .. .+ .+.+..++|+..|.| +..|++.+.+.+++
T Consensus 126 ~~~-~~----------------~l-g~~~~~~vSa~~g~g-v~~ll~~i~~~l~~ 161 (429)
T TIGR03594 126 AAE-FY----------------SL-GFGEPIPISAEHGRG-IGDLLDAILELLPE 161 (429)
T ss_pred HHH-HH----------------hc-CCCCeEEEeCCcCCC-hHHHHHHHHHhcCc
Confidence 111 11 01 133456789999999 99999999998864
No 52
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.39 E-value=9.2e-12 Score=119.75 Aligned_cols=173 Identities=21% Similarity=0.202 Sum_probs=104.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhc-CCceEEEEcccCcchh----------------HHHHHhhhhc-cC--------
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGA----------------FDQLKQNATK-AK-------- 156 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~-g~kVaiVs~D~~r~~a----------------~~qLk~~~~~-~~-------- 156 (494)
+|+++|..||||||+++.|+..|..+ |++|++||+|+ -++- .+.++..+.. .+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp-d~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk 80 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFK 80 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC-CCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCcccccc
Confidence 59999999999999999988777766 59999999997 2221 2222222111 11
Q ss_pred ------------------cceeccC-------CCCChH-HHHHHHHHHHhccCCcEEEEeC-CCCCchhHHHHHHHHHHH
Q 011076 157 ------------------IPFYGSY-------TESDPV-RIAVEGVETFKKENCDLIIVDT-SGRHKQEAALFEEMRQVS 209 (494)
Q Consensus 157 ------------------i~~~~~~-------~~~dp~-~i~~~~l~~~~~~~~dvIIIDT-aG~~~~~~~l~~el~~i~ 209 (494)
+...... .+.+|. .++++.+.++..+.+|+||||| ||..|.....
T Consensus 81 ~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~~~~e~VivDtEAGiEHfgRg~-------- 152 (255)
T COG3640 81 ENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPMNALLRRLLRHLILNRYEVVIVDTEAGIEHFGRGT-------- 152 (255)
T ss_pred cCcchhhhhHHHhhhcCCccEEEeccccCCCCcccchHHHHHHHHHHHHhcccCcEEEEecccchhhhcccc--------
Confidence 0000000 112343 3467778888888899999999 9987654322
Q ss_pred HhcCCCEEEEEecCCCcccHHHHHHH---HhccC--CeeEEEEeCccCCCCccchhHHHHhcCCCeEEeccccccccccc
Q 011076 210 EATNPDLVIFVMDSSIGQAAFDQAQA---FKQSV--SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEV 284 (494)
Q Consensus 210 ~~~~~d~vllVvDa~~g~~~~~~~~~---f~~~~--~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~ 284 (494)
.-..|.++.|+|++. ..+..++. +.+.+ +...+|+||+|.. ...........+.++. ..-|
T Consensus 153 -~~~vD~vivVvDpS~--~sl~taeri~~L~~elg~k~i~~V~NKv~e~--e~~~~~~~~~~~~~vl---------g~iP 218 (255)
T COG3640 153 -IEGVDLVIVVVDPSY--KSLRTAERIKELAEELGIKRIFVVLNKVDEE--EELLRELAEELGLEVL---------GVIP 218 (255)
T ss_pred -ccCCCEEEEEeCCcH--HHHHHHHHHHHHHHHhCCceEEEEEeeccch--hHHHHhhhhccCCeEE---------EEcc
Confidence 225799999999984 33333333 32222 3459999999976 1112222222333322 2356
Q ss_pred cCccchhhcccCCC
Q 011076 285 FDVKPFVSRLLGMG 298 (494)
Q Consensus 285 f~p~~~vs~~~G~G 298 (494)
++|..+-.-+.|.-
T Consensus 219 ~d~~v~~~dl~G~p 232 (255)
T COG3640 219 YDPEVVEADLKGEP 232 (255)
T ss_pred CCHHHHhccccCCc
Confidence 77766655555554
No 53
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=99.38 E-value=1.2e-11 Score=115.06 Aligned_cols=128 Identities=16% Similarity=0.175 Sum_probs=82.3
Q ss_pred EEEE-cCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 104 IMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 104 I~lv-G~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
|+++ +.+|+||||++.+||.++++.|++|++|+.|++++.....+. ...........+......
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~ 66 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWR---------------GPMKMGAIKQFLTDVDWG 66 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHh---------------CcchHHHHHHHHHHhhcC
Confidence 4444 667999999999999999999999999999999875322110 001122233334444446
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc--cHHHHHHHHhc-cCCeeEEEEeCccC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQ-SVSVGAVIVTKMDG 252 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~--~~~~~~~~f~~-~~~i~~vVltK~D~ 252 (494)
+||+||||||+..... .. .+.....+|.+++|+.+.... +..+....+.+ ..++.++|+|+.+.
T Consensus 67 ~yD~VIiD~pp~~~~~--~~----~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~ 133 (169)
T cd02037 67 ELDYLVIDMPPGTGDE--HL----TLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYF 133 (169)
T ss_pred CCCEEEEeCCCCCcHH--HH----HHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcc
Confidence 8999999999976321 11 111124579999999876321 12222333332 24667999999985
No 54
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.35 E-value=1.3e-11 Score=123.84 Aligned_cols=180 Identities=13% Similarity=0.140 Sum_probs=118.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCC---CChHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE---SDPVRIAVEGVE 177 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~---~dp~~i~~~~l~ 177 (494)
..++.|+|+|||||||++.+|...|... ++++++..|.......+.++. .++|+....++ --.......++.
T Consensus 104 ~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~t~~Da~rI~~----~g~pvvqi~tG~~Chl~a~mv~~Al~ 178 (290)
T PRK10463 104 QLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQTVNDAARIRA----TGTPAIQVNTGKGCHLDAQMIADAAP 178 (290)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEECCCcCcHHHHHHHHh----cCCcEEEecCCCCCcCcHHHHHHHHH
Confidence 4579999999999999999999988764 689999999765544444432 34454443331 112344567788
Q ss_pred HHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc-HHHHHHHHhccCCeeEEEEeCccCCCCc
Q 011076 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA-AFDQAQAFKQSVSVGAVIVTKMDGHAKG 256 (494)
Q Consensus 178 ~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~-~~~~~~~f~~~~~i~~vVltK~D~~~~~ 256 (494)
.+...+.|++||++.|.+.....+ -+..+..+.|++...|.+ ....-..|.. .+.+|+||+|.....
T Consensus 179 ~L~~~~~d~liIEnvGnLvcPa~f---------dlge~~~v~vlsV~eg~dkplKyp~~f~~---ADIVVLNKiDLl~~~ 246 (290)
T PRK10463 179 RLPLDDNGILFIENVGNLVCPASF---------DLGEKHKVAVLSVTEGEDKPLKYPHMFAA---ASLMLLNKVDLLPYL 246 (290)
T ss_pred HHhhcCCcEEEEECCCCccCCCcc---------chhhceeEEEEECccccccchhccchhhc---CcEEEEEhHHcCccc
Confidence 887788999999999963221111 112233457777776643 2222222322 258999999996532
Q ss_pred cchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 257 g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
...+.... +.+..+.++.+.+.+|+..|.| ++.|++++.+.
T Consensus 247 ~~dle~~~------------~~lr~lnp~a~I~~vSA~tGeG-ld~L~~~L~~~ 287 (290)
T PRK10463 247 NFDVEKCI------------ACAREVNPEIEIILISATSGEG-MDQWLNWLETQ 287 (290)
T ss_pred HHHHHHHH------------HHHHhhCCCCcEEEEECCCCCC-HHHHHHHHHHh
Confidence 22222222 3445667888888999999999 99999998763
No 55
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.34 E-value=1.9e-11 Score=110.05 Aligned_cols=151 Identities=22% Similarity=0.332 Sum_probs=90.6
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhccCC
Q 011076 105 MFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENC 184 (494)
Q Consensus 105 ~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~~~ 184 (494)
+++|.+||||||++++|+ +.+...++..+ .+++....... ...++
T Consensus 1 ~l~G~~~~GKssl~~~l~------~~~~~~~~~~~-----------~~t~~~~~~~~------------------~~~~~ 45 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLT------GRRDAIVEDTP-----------GVTRDRIYGEA------------------EWGGR 45 (157)
T ss_pred CccCCCCCCHHHHHHHHh------CCcEEeecCCC-----------CceeCceeEEE------------------EECCe
Confidence 478999999999999999 76666555422 11211111000 01257
Q ss_pred cEEEEeCCCCCchhHHHHHHHHH--HHHhcCCCEEEEEecCCCccc--HHHHHHHHhc-cCCeeEEEEeCccCCCCccch
Q 011076 185 DLIIVDTSGRHKQEAALFEEMRQ--VSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQ-SVSVGAVIVTKMDGHAKGGGA 259 (494)
Q Consensus 185 dvIIIDTaG~~~~~~~l~~el~~--i~~~~~~d~vllVvDa~~g~~--~~~~~~~f~~-~~~i~~vVltK~D~~~~~g~~ 259 (494)
.+.++||||.......+...+.. ......+|.+++|+|+..+.. .......+.. ..++ .+|+||+|.......
T Consensus 46 ~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~pi-iiv~nK~D~~~~~~~- 123 (157)
T cd01894 46 EFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPV-ILVVNKVDNIKEEDE- 123 (157)
T ss_pred EEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCE-EEEEECcccCChHHH-
Confidence 88999999997654323333321 122346899999999975432 2222233332 2344 999999998654211
Q ss_pred hHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 260 LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 260 ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
.... ..+. ..+...+|++.|.| ++.+++.+.+.
T Consensus 124 ~~~~----------------~~~~-~~~~~~~Sa~~~~g-v~~l~~~l~~~ 156 (157)
T cd01894 124 AAEF----------------YSLG-FGEPIPISAEHGRG-IGDLLDAILEL 156 (157)
T ss_pred HHHH----------------HhcC-CCCeEEEecccCCC-HHHHHHHHHhh
Confidence 1111 1111 12346789999999 99999988764
No 56
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.33 E-value=2.4e-11 Score=109.17 Aligned_cols=151 Identities=21% Similarity=0.217 Sum_probs=91.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|++||||||+++.+. +.+.+.++.. ..++..-..... ...
T Consensus 3 ~i~l~G~~~~GKstli~~l~------~~~~~~~~~~-----------~~~~~~~~~~~~------------------~~~ 47 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALA------GRDRAIVSDI-----------AGTTRDVIEESI------------------DIG 47 (157)
T ss_pred EEEEECCCCCCHHHHHHHHH------CCceEeccCC-----------CCCccceEEEEE------------------EeC
Confidence 58999999999999999998 6665554441 111111110000 012
Q ss_pred CCcEEEEeCCCCCchhHHHHHH-H-HHHHHhcCCCEEEEEecCCCcccHHHH-HHHHhccCCeeEEEEeCccCCCCccch
Q 011076 183 NCDLIIVDTSGRHKQEAALFEE-M-RQVSEATNPDLVIFVMDSSIGQAAFDQ-AQAFKQSVSVGAVIVTKMDGHAKGGGA 259 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~e-l-~~i~~~~~~d~vllVvDa~~g~~~~~~-~~~f~~~~~i~~vVltK~D~~~~~g~~ 259 (494)
++++.++||||..........+ + ........+|.+++|+|++......+. ........++ .+|+||+|.......
T Consensus 48 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~v-i~v~nK~D~~~~~~~- 125 (157)
T cd04164 48 GIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILELPADKPI-IVVLNKSDLLPDSEL- 125 (157)
T ss_pred CEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHhhcCCCE-EEEEEchhcCCcccc-
Confidence 5678999999986543322211 1 122234468999999999854333221 1111122344 999999998654211
Q ss_pred hHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 260 LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 260 ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.......+...+|+..|.| ++.|++.+.+.+
T Consensus 126 --------------------~~~~~~~~~~~~Sa~~~~~-v~~l~~~l~~~~ 156 (157)
T cd04164 126 --------------------LSLLAGKPIIAISAKTGEG-LDELKEALLELA 156 (157)
T ss_pred --------------------ccccCCCceEEEECCCCCC-HHHHHHHHHHhh
Confidence 1122234567789999999 999999887754
No 57
>PHA02518 ParA-like protein; Provisional
Probab=99.33 E-value=2.7e-11 Score=115.68 Aligned_cols=137 Identities=18% Similarity=0.208 Sum_probs=83.0
Q ss_pred EEEEEcCC-CCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 103 VIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 103 vI~lvG~~-GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
+|+|++.- ||||||++.+||.+|+++|++|++||+|+++..+...-........++... .. ....+.+..+ .
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~~~~~~~~~~~i~~~~---~~---~~~~~~l~~~-~ 74 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWAEAREEGEPLIPVVR---MG---KSIRADLPKV-A 74 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHHHHhcccCCCCCchhh---cc---HHHHHHHHHH-h
Confidence 67888665 899999999999999999999999999999876532100000111122211 10 1122334443 3
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc-----cHHHHHH---HHhccCCeeEEEEeCccCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ-----AAFDQAQ---AFKQSVSVGAVIVTKMDGH 253 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~-----~~~~~~~---~f~~~~~i~~vVltK~D~~ 253 (494)
..||||||||||.... +.. .....+|.++++++++.-. ...+... .++...+..++|.|+.+..
T Consensus 75 ~~~d~viiD~p~~~~~---~~~-----~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~ 146 (211)
T PHA02518 75 SGYDYVVVDGAPQDSE---LAR-----AALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKN 146 (211)
T ss_pred ccCCEEEEeCCCCccH---HHH-----HHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCCc
Confidence 5799999999997532 111 1223579999999987421 1111122 2223345567888988754
Q ss_pred C
Q 011076 254 A 254 (494)
Q Consensus 254 ~ 254 (494)
.
T Consensus 147 ~ 147 (211)
T PHA02518 147 T 147 (211)
T ss_pred c
Confidence 3
No 58
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.32 E-value=2.2e-11 Score=131.32 Aligned_cols=158 Identities=22% Similarity=0.324 Sum_probs=97.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|.|||||||+++.|+ +.+.++++. .+..++..+..... .
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~------~~~~~~v~~-----------~~gvT~d~~~~~~~------------------~ 83 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRIL------GRREAVVED-----------VPGVTRDRVSYDAE------------------W 83 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHh------CcCcccccC-----------CCCCCEeeEEEEEE------------------E
Confidence 469999999999999999999 777666654 22333332221110 1
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHH--HHhcCCCEEEEEecCCCcccH--HHHHHHHhccCCeeEEEEeCccCCCCcc
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQV--SEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHAKGG 257 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i--~~~~~~d~vllVvDa~~g~~~--~~~~~~f~~~~~i~~vVltK~D~~~~~g 257 (494)
.+..+.|+||||.......+...+... .....+|.++||+|++.+... ...+..+...-.+..+|+||+|......
T Consensus 84 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~ 163 (472)
T PRK03003 84 NGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEA 163 (472)
T ss_pred CCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch
Confidence 256789999999764333333333321 224468999999999876432 2234444433233499999999853211
Q ss_pred chhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCCC
Q 011076 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (494)
Q Consensus 258 ~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~ 313 (494)
.. .... .+. +....++|++.|.| +..|++.+.+.+++
T Consensus 164 ~~-~~~~----------------~~g-~~~~~~iSA~~g~g-i~eL~~~i~~~l~~ 200 (472)
T PRK03003 164 DA-AALW----------------SLG-LGEPHPVSALHGRG-VGDLLDAVLAALPE 200 (472)
T ss_pred hh-HHHH----------------hcC-CCCeEEEEcCCCCC-cHHHHHHHHhhccc
Confidence 11 0000 011 11124799999999 99999999888754
No 59
>PRK11058 GTPase HflX; Provisional
Probab=99.32 E-value=2.4e-11 Score=129.12 Aligned_cols=155 Identities=15% Similarity=0.188 Sum_probs=92.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|.|||||||++|+|. +.++. ++. ...+|.....-..... .
T Consensus 199 ~ValVG~~NaGKSSLlN~Lt------~~~~~-v~~-----------~~~tTld~~~~~i~l~-----------------~ 243 (426)
T PRK11058 199 TVSLVGYTNAGKSTLFNRIT------EARVY-AAD-----------QLFATLDPTLRRIDVA-----------------D 243 (426)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCcee-ecc-----------CCCCCcCCceEEEEeC-----------------C
Confidence 59999999999999999999 77776 433 1122222111000000 1
Q ss_pred CCcEEEEeCCCCCch-hHHHHHHHH-HHHHhcCCCEEEEEecCCCcccHHH------HHHHHhc-cCCeeEEEEeCccCC
Q 011076 183 NCDLIIVDTSGRHKQ-EAALFEEMR-QVSEATNPDLVIFVMDSSIGQAAFD------QAQAFKQ-SVSVGAVIVTKMDGH 253 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~-~~~l~~el~-~i~~~~~~d~vllVvDa~~g~~~~~------~~~~f~~-~~~i~~vVltK~D~~ 253 (494)
...++|+||||.... ...+.+.+. .+.....+|.+++|+|++......+ ....+.. ..| ..+|+||+|..
T Consensus 244 ~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~p-vIiV~NKiDL~ 322 (426)
T PRK11058 244 VGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIP-TLLVMNKIDML 322 (426)
T ss_pred CCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCC-EEEEEEcccCC
Confidence 236799999998432 333433333 3344567999999999986532111 1222222 234 48999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
.......... . ..+....++|+..|.| ++.|++.+.+.+.
T Consensus 323 ~~~~~~~~~~-----------------~-~~~~~~v~ISAktG~G-IdeL~e~I~~~l~ 362 (426)
T PRK11058 323 DDFEPRIDRD-----------------E-ENKPIRVWLSAQTGAG-IPLLFQALTERLS 362 (426)
T ss_pred CchhHHHHHH-----------------h-cCCCceEEEeCCCCCC-HHHHHHHHHHHhh
Confidence 4311111000 0 0111125689999999 9999999988874
No 60
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.31 E-value=1.8e-11 Score=118.08 Aligned_cols=144 Identities=15% Similarity=0.108 Sum_probs=84.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHH--------HHhhh-----------------hccCc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQ--------LKQNA-----------------TKAKI 157 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~q--------Lk~~~-----------------~~~~i 157 (494)
+|+++|..||||||++.+||.+|++.|+||++|++|++......- +.... ...++
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFEGFGGV 81 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCccccccCCCCCCCHHHHHhhhCCcCCcChhHeeEeCCCCc
Confidence 688999999999999999999999999999999999876433110 00000 01233
Q ss_pred ceeccCCCC-C-----hH-----HHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCc
Q 011076 158 PFYGSYTES-D-----PV-----RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG 226 (494)
Q Consensus 158 ~~~~~~~~~-d-----p~-----~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g 226 (494)
.+.+..... + +. ...+ .+..+ .+.||||||||+|........ ..+ . ...+|.+++|++++.-
T Consensus 82 ~vlp~~~~~~~~~~~~~~~~~~~~~l~-~l~~~-~~~yD~ilID~~g~~~~~~~~-~~l---~-~~~ad~vliv~~p~~~ 154 (212)
T cd02117 82 KCVESGGPEPGVGCAGRGVITAVNLLE-KEGFA-EDDLDVVLYDVLGDVVCGGFA-MPI---R-EGKADEIYIVTSGEFM 154 (212)
T ss_pred EEEeCCCCCCCcccCCcchhhHHHHHH-hcccc-ccCCCEEEEecCCCceecccc-ccc---c-cccCcEEEEEecccHH
Confidence 333221110 0 00 1111 22222 457999999998876322110 000 0 1257899999988632
Q ss_pred c--c---HHHHHHHHhc--cCCeeEEEEeCccCC
Q 011076 227 Q--A---AFDQAQAFKQ--SVSVGAVIVTKMDGH 253 (494)
Q Consensus 227 ~--~---~~~~~~~f~~--~~~i~~vVltK~D~~ 253 (494)
. . ..+.++.+++ ...+.++|+||++..
T Consensus 155 sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~ 188 (212)
T cd02117 155 ALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD 188 (212)
T ss_pred HHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc
Confidence 1 1 1223344433 334568999999965
No 61
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.31 E-value=4.7e-11 Score=108.76 Aligned_cols=163 Identities=20% Similarity=0.329 Sum_probs=91.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
+..|+++|.+|+||||+++.|. +.....+...+ .+++...... +.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~------~~~~~~~~~~~-----------~~~~~~~~~~------------------~~ 46 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALL------GEERVIVSDIA-----------GTTRDSIDVP------------------FE 46 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHh------CccceeccCCC-----------CCccCceeeE------------------EE
Confidence 3469999999999999999998 55444433311 1111111100 01
Q ss_pred ccCCcEEEEeCCCCCchh--HHH---HHHHHHHHHhcCCCEEEEEecCCCcccH--HHHHHHHh-ccCCeeEEEEeCccC
Q 011076 181 KENCDLIIVDTSGRHKQE--AAL---FEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFK-QSVSVGAVIVTKMDG 252 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~--~~l---~~el~~i~~~~~~d~vllVvDa~~g~~~--~~~~~~f~-~~~~i~~vVltK~D~ 252 (494)
..+.++.++||||..... ... ...+........+|.+++|+|+..+... ........ ...++ .+|+||+|.
T Consensus 47 ~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~-iiv~nK~Dl 125 (174)
T cd01895 47 YDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKAL-VIVVNKWDL 125 (174)
T ss_pred ECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCE-EEEEecccc
Confidence 125678999999975331 111 1112223334478999999998765322 22222222 22444 899999998
Q ss_pred CCCccchhHHHH-hcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 253 HAKGGGALSAVA-ATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 253 ~~~~g~~ls~~~-~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
............ ... +.+.. ....+..++|+..|.| +..+++.+.+.
T Consensus 126 ~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~~Sa~~~~~-i~~~~~~l~~~ 173 (174)
T cd01895 126 VEKDSKTMKEFKKEIR---------RKLPF-LDYAPIVFISALTGQG-VDKLFDAIDEV 173 (174)
T ss_pred CCccHHHHHHHHHHHH---------hhccc-ccCCceEEEeccCCCC-HHHHHHHHHHh
Confidence 654222221111 000 11110 1234667789999999 99998887654
No 62
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.30 E-value=7.3e-12 Score=113.15 Aligned_cols=137 Identities=23% Similarity=0.321 Sum_probs=89.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
+.|+|+|+.|||||||+++|- |...- +....-+.+
T Consensus 2 krimliG~~g~GKTTL~q~L~------~~~~~-----------------~~KTq~i~~---------------------- 36 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALN------GEEIR-----------------YKKTQAIEY---------------------- 36 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHc------CCCCC-----------------cCccceeEe----------------------
Confidence 359999999999999999998 43211 000011211
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc--HHHHHHHHhccCCeeEEEEeCccCCCCccc-
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGHAKGGG- 258 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~--~~~~~~~f~~~~~i~~vVltK~D~~~~~g~- 258 (494)
++ .+|||||-.-....+...+ +..+.++|.+++|.|++.... ....+..|+. |+ +-|+||+|.......
T Consensus 37 --~~-~~IDTPGEyiE~~~~y~aL--i~ta~dad~V~ll~dat~~~~~~pP~fa~~f~~--pv-IGVITK~Dl~~~~~~i 108 (143)
T PF10662_consen 37 --YD-NTIDTPGEYIENPRFYHAL--IVTAQDADVVLLLQDATEPRSVFPPGFASMFNK--PV-IGVITKIDLPSDDANI 108 (143)
T ss_pred --cc-cEEECChhheeCHHHHHHH--HHHHhhCCEEEEEecCCCCCccCCchhhcccCC--CE-EEEEECccCccchhhH
Confidence 12 4699999876666666665 344568999999999987643 3346666754 33 779999999833211
Q ss_pred --hhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHH
Q 011076 259 --ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (494)
Q Consensus 259 --~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~ 309 (494)
+...+...| +...+.+|+..|.| +++|.+.+++
T Consensus 109 ~~a~~~L~~aG-----------------~~~if~vS~~~~eG-i~eL~~~L~~ 143 (143)
T PF10662_consen 109 ERAKKWLKNAG-----------------VKEIFEVSAVTGEG-IEELKDYLEE 143 (143)
T ss_pred HHHHHHHHHcC-----------------CCCeEEEECCCCcC-HHHHHHHHhC
Confidence 222222222 12336789999999 9999888753
No 63
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.30 E-value=3.9e-11 Score=129.39 Aligned_cols=165 Identities=13% Similarity=0.138 Sum_probs=100.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
.+..|+++|.|||||||++++|. +.+..+++. .+.+++.-+.....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~------~~~~~~~s~-----------~~gtT~d~~~~~~~----------------- 255 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLA------GEERSVVDD-----------VAGTTVDPVDSLIE----------------- 255 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHh------CCCcccccC-----------CCCccCCcceEEEE-----------------
Confidence 35679999999999999999999 776666655 23333332211110
Q ss_pred hccCCcEEEEeCCCCCch-----hHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH--HHHHHHhc-cCCeeEEEEeCcc
Q 011076 180 KKENCDLIIVDTSGRHKQ-----EAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAFKQ-SVSVGAVIVTKMD 251 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~-----~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~--~~~~~f~~-~~~i~~vVltK~D 251 (494)
..+..+.|+||||.... ..+....+........+|.+++|+|++.+.... ..+....+ ..++ .+|+||+|
T Consensus 256 -~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~pi-IiV~NK~D 333 (472)
T PRK03003 256 -LGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRAL-VLAFNKWD 333 (472)
T ss_pred -ECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEECcc
Confidence 12456789999996321 122333333333445789999999998764332 23333332 3444 99999999
Q ss_pred CCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 252 GHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 252 ~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
...... ......... +.+. ...+.|..++|++.|.| ++.+++.+.+.++
T Consensus 334 l~~~~~-~~~~~~~i~---------~~l~-~~~~~~~~~~SAk~g~g-v~~lf~~i~~~~~ 382 (472)
T PRK03003 334 LVDEDR-RYYLEREID---------RELA-QVPWAPRVNISAKTGRA-VDKLVPALETALE 382 (472)
T ss_pred cCChhH-HHHHHHHHH---------Hhcc-cCCCCCEEEEECCCCCC-HHHHHHHHHHHHH
Confidence 864211 111110000 1111 12345677899999999 9999999988763
No 64
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.29 E-value=3.8e-11 Score=115.09 Aligned_cols=184 Identities=18% Similarity=0.265 Sum_probs=111.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhh--ccCc-cee--ccCC---CCChHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNAT--KAKI-PFY--GSYT---ESDPVRIA 172 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~--~~~i-~~~--~~~~---~~dp~~i~ 172 (494)
|..|.++|++||||||++.++...+.. ..++.++..|.+.....+.+...+. +..+ .+. +... ..+. ...
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~ 78 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQ-KYQLAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTAIREDA-SMN 78 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCc-CCcEEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccceeccCH-HHH
Confidence 457999999999999999999987765 4578999999876544443333221 1111 000 0100 0122 122
Q ss_pred HHHHHHHh--ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHH-HHHHhccCCeeEEEEeC
Q 011076 173 VEGVETFK--KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ-AQAFKQSVSVGAVIVTK 249 (494)
Q Consensus 173 ~~~l~~~~--~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~-~~~f~~~~~i~~vVltK 249 (494)
..++.... ..++|+++|+|.|..-.. ..... -.+.++.|+|+..+.+.... ...+. --+.+|+||
T Consensus 79 ~~~L~~l~~~~~~~D~iiIEt~G~~l~~-~~~~~--------l~~~~i~vvD~~~~~~~~~~~~~qi~---~ad~~~~~k 146 (199)
T TIGR00101 79 LEAVAEMEARFPPLEMVFIESGGDNLSA-TFSPE--------LADLTIFVIDVAAGDKIPRKGGPGIT---RSDLLVINK 146 (199)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCCccc-ccchh--------hhCcEEEEEEcchhhhhhhhhHhHhh---hccEEEEEh
Confidence 34444442 247999999999953111 11111 13668999999876553221 11111 125899999
Q ss_pred ccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 250 MDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 250 ~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
+|.....+..+.... +.+..+++..+...+|++.|.| ++.+++.+.+.+
T Consensus 147 ~d~~~~~~~~~~~~~------------~~~~~~~~~~~i~~~Sa~~g~g-i~el~~~i~~~~ 195 (199)
T TIGR00101 147 IDLAPMVGADLGVME------------RDAKKMRGEKPFIFTNLKTKEG-LDTVIDWIEHYA 195 (199)
T ss_pred hhccccccccHHHHH------------HHHHHhCCCCCEEEEECCCCCC-HHHHHHHHHhhc
Confidence 998743222233322 3344455666778899999999 999999998765
No 65
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.28 E-value=1e-10 Score=132.09 Aligned_cols=158 Identities=20% Similarity=0.297 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|.|||||||++|+|. |.+.++++. .+..++..+..... .
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~------~~~~~iv~~-----------~pGvT~d~~~~~~~------------------~ 320 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRIL------GRREAVVED-----------TPGVTRDRVSYDAE------------------W 320 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHh------CCCceeecC-----------CCCeeEEEEEEEEE------------------E
Confidence 569999999999999999999 888888776 33344433321111 1
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHH--HHHhcCCCEEEEEecCCCcccHHH--HHHHHhccCCeeEEEEeCccCCCCcc
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQ--VSEATNPDLVIFVMDSSIGQAAFD--QAQAFKQSVSVGAVIVTKMDGHAKGG 257 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~--i~~~~~~d~vllVvDa~~g~~~~~--~~~~f~~~~~i~~vVltK~D~~~~~g 257 (494)
.+..+.++||||.......+...+.. ......+|.++||+|++.+....+ .+..+...-.+..+|+||+|......
T Consensus 321 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~ 400 (712)
T PRK09518 321 AGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEY 400 (712)
T ss_pred CCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchh
Confidence 25678999999976422223333321 122447899999999987644333 33444433233499999999754321
Q ss_pred chhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCCC
Q 011076 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (494)
Q Consensus 258 ~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~ 313 (494)
.. ..... + .+....++|+..|.| +..|++.+.+.++.
T Consensus 401 ~~-~~~~~----------------l-g~~~~~~iSA~~g~G-I~eLl~~i~~~l~~ 437 (712)
T PRK09518 401 DA-AEFWK----------------L-GLGEPYPISAMHGRG-VGDLLDEALDSLKV 437 (712)
T ss_pred hH-HHHHH----------------c-CCCCeEEEECCCCCC-chHHHHHHHHhccc
Confidence 11 11110 1 111225689999999 99999999988754
No 66
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=99.28 E-value=8.5e-11 Score=115.24 Aligned_cols=141 Identities=15% Similarity=0.103 Sum_probs=84.0
Q ss_pred eEEEEEcC-CCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 102 SVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 102 ~vI~lvG~-~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
++|+|.+. .||||||++.+||.+|+++|++|++||+|+++..... ..........+.................+..+.
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 80 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRW-KENALRSNTWDPACEVYAADELPLLEAAYEDAE 80 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHH-HHhhccccCCCccceecCCCHHHHHHHHHHHHh
Confidence 36777755 4999999999999999999999999999999885421 111101000111011111122334455566665
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc--cHHHHH---HH----HhccCCeeEEEEeCcc
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQA---QA----FKQSVSVGAVIVTKMD 251 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~--~~~~~~---~~----f~~~~~i~~vVltK~D 251 (494)
..+||||||||||..... . ......+|.++..+.++... ...+.. .. .+..++. .+|+|.++
T Consensus 81 ~~~yD~iiID~pp~~~~~--~------~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~-~iv~~~~~ 151 (231)
T PRK13849 81 LQGFDYALADTHGGSSEL--N------NTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPT-AILRQRVP 151 (231)
T ss_pred hCCCCEEEEeCCCCccHH--H------HHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCe-EEEEEecc
Confidence 568999999999977421 1 11223568888888775321 111111 11 1223444 69999987
Q ss_pred C
Q 011076 252 G 252 (494)
Q Consensus 252 ~ 252 (494)
.
T Consensus 152 ~ 152 (231)
T PRK13849 152 V 152 (231)
T ss_pred c
Confidence 3
No 67
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.28 E-value=5.7e-11 Score=126.61 Aligned_cols=155 Identities=22% Similarity=0.321 Sum_probs=95.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
+|+++|.+||||||+++.|+ +.+.++++. .+..++........ ..
T Consensus 3 ~I~ivG~~~vGKStL~n~l~------~~~~~~v~~-----------~~~~t~d~~~~~~~------------------~~ 47 (435)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLT------GKRDAIVAD-----------TPGVTRDRIYGEAE------------------WL 47 (435)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCCceeeCC-----------CCCCcccceEEEEE------------------EC
Confidence 59999999999999999999 888777765 22223222211110 12
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHH--HHhcCCCEEEEEecCCCcccHH--HHHHHHhccCCeeEEEEeCccCCCCccc
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQV--SEATNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMDGHAKGGG 258 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i--~~~~~~d~vllVvDa~~g~~~~--~~~~~f~~~~~i~~vVltK~D~~~~~g~ 258 (494)
++++.|+||||.......+..++... .....+|.+++|+|+..+.... ..+..+...-.+..+|+||+|.......
T Consensus 48 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~~ 127 (435)
T PRK00093 48 GREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEEAD 127 (435)
T ss_pred CcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccchhh
Confidence 57889999999975333344444322 2344789999999998764432 2333333322234899999996432111
Q ss_pred hhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 259 ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 259 ~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.... ...+ +.....+|+..|.| +..|++.+.+..
T Consensus 128 ~~~~-~~lg-----------------~~~~~~iSa~~g~g-v~~l~~~I~~~~ 161 (435)
T PRK00093 128 AYEF-YSLG-----------------LGEPYPISAEHGRG-IGDLLDAILEEL 161 (435)
T ss_pred HHHH-HhcC-----------------CCCCEEEEeeCCCC-HHHHHHHHHhhC
Confidence 1111 1111 11235678889988 888888887744
No 68
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.27 E-value=2e-11 Score=120.11 Aligned_cols=144 Identities=19% Similarity=0.263 Sum_probs=68.7
Q ss_pred EEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc------hh-HHHHH---hhhhccCcc-----eeccCCCCChHH
Q 011076 106 FVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA------GA-FDQLK---QNATKAKIP-----FYGSYTESDPVR 170 (494)
Q Consensus 106 lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~------~a-~~qLk---~~~~~~~i~-----~~~~~~~~dp~~ 170 (494)
++|++||||||+|..+..|+...|+++.+|+.||.-. .- +..+. ...+..+.. ++.........+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~d 80 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENID 80 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999998321 10 10000 001110000 000000000112
Q ss_pred HHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcC---CCEEEEEecCCCcccHHHHHH--------HHhcc
Q 011076 171 IAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATN---PDLVIFVMDSSIGQAAFDQAQ--------AFKQS 239 (494)
Q Consensus 171 i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~---~d~vllVvDa~~g~~~~~~~~--------~f~~~ 239 (494)
...+.+... ..+|+|+||||..... .....+..+..... +-.+++++|+....+...... .++-.
T Consensus 81 ~l~~~i~~~---~~~y~l~DtPGQiElf-~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~ 156 (238)
T PF03029_consen 81 WLDEEIEKY---EDDYLLFDTPGQIELF-THSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLE 156 (238)
T ss_dssp HHHHHHHHH---H-SEEEEE--SSHHHH-HHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhc---CCcEEEEeCCCCEEEE-EechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCC
Confidence 223333332 3399999999986432 11122333444333 456899999986555333221 22223
Q ss_pred CCeeEEEEeCccCCC
Q 011076 240 VSVGAVIVTKMDGHA 254 (494)
Q Consensus 240 ~~i~~vVltK~D~~~ 254 (494)
+|. ..|+||+|...
T Consensus 157 lP~-vnvlsK~Dl~~ 170 (238)
T PF03029_consen 157 LPH-VNVLSKIDLLS 170 (238)
T ss_dssp SEE-EEEE--GGGS-
T ss_pred CCE-EEeeeccCccc
Confidence 444 99999999976
No 69
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.27 E-value=1.1e-10 Score=123.91 Aligned_cols=187 Identities=19% Similarity=0.298 Sum_probs=108.1
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccC
Q 011076 77 QAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAK 156 (494)
Q Consensus 77 ~~v~~eL~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~ 156 (494)
..+.+++...+....... .....+..|+++|.+||||||+++.|. +....+++. .+.+++..
T Consensus 149 ~~ll~~i~~~l~~~~~~~-~~~~~~~~v~ivG~~~~GKSsLin~l~------~~~~~~~~~-----------~~gtt~~~ 210 (429)
T TIGR03594 149 GDLLDAILELLPEEEEEE-EEEDGPIKIAIIGRPNVGKSTLVNALL------GEERVIVSD-----------IAGTTRDS 210 (429)
T ss_pred HHHHHHHHHhcCcccccc-cccCCceEEEEECCCCCCHHHHHHHHH------CCCeeecCC-----------CCCceECc
Confidence 344555555554322211 112234579999999999999999999 776666554 22333333
Q ss_pred cceeccCCCCChHHHHHHHHHHHhccCCcEEEEeCCCCCchh---H--HHHHHHHHHHHhcCCCEEEEEecCCCcccHHH
Q 011076 157 IPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQE---A--ALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD 231 (494)
Q Consensus 157 i~~~~~~~~~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~---~--~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~ 231 (494)
+..... ..+..+.|+||||..... + +....+..+.....+|.+++|+|++.+....+
T Consensus 211 ~~~~~~------------------~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~ 272 (429)
T TIGR03594 211 IDIPFE------------------RNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQD 272 (429)
T ss_pred EeEEEE------------------ECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHH
Confidence 221110 124578999999974321 1 11111223334557899999999987654332
Q ss_pred --HHHHHhc-cCCeeEEEEeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHH
Q 011076 232 --QAQAFKQ-SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIH 308 (494)
Q Consensus 232 --~~~~f~~-~~~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~ 308 (494)
.+....+ ..++ .+|+||+|..........+..... +.+. ...+.|..++|++.|.| +..+++.+.
T Consensus 273 ~~~~~~~~~~~~~i-iiv~NK~Dl~~~~~~~~~~~~~~~---------~~~~-~~~~~~vi~~SA~~g~~-v~~l~~~i~ 340 (429)
T TIGR03594 273 LRIAGLILEAGKAL-VIVVNKWDLVKDEKTREEFKKELR---------RKLP-FLDFAPIVFISALTGQG-VDKLLDAID 340 (429)
T ss_pred HHHHHHHHHcCCcE-EEEEECcccCCCHHHHHHHHHHHH---------Hhcc-cCCCCceEEEeCCCCCC-HHHHHHHHH
Confidence 2222222 2444 899999998622111111111100 1111 12346778899999999 999999988
Q ss_pred HhC
Q 011076 309 EVV 311 (494)
Q Consensus 309 ~~~ 311 (494)
+.+
T Consensus 341 ~~~ 343 (429)
T TIGR03594 341 EVY 343 (429)
T ss_pred HHH
Confidence 765
No 70
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.26 E-value=2.8e-11 Score=118.33 Aligned_cols=208 Identities=22% Similarity=0.265 Sum_probs=115.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC------cchh--H------HHHHhhhhccCcceeccCC
Q 011076 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF------RAGA--F------DQLKQNATKAKIPFYGSYT 164 (494)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~------r~~a--~------~qLk~~~~~~~i~~~~~~~ 164 (494)
.+|.+|+++|..||||||++.+|..|+..++....+|+.||- -+.. + +-++++.--.+ -++.+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPN---GgI~T 93 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPN---GGIVT 93 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCC---cchhh
Confidence 346789999999999999999999999999999999999972 1110 1 11222111000 01111
Q ss_pred CCChHHH----HHHHHHHHhccCCcEEEEeCCCCCchh--HHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHH------
Q 011076 165 ESDPVRI----AVEGVETFKKENCDLIIVDTSGRHKQE--AALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ------ 232 (494)
Q Consensus 165 ~~dp~~i----~~~~l~~~~~~~~dvIIIDTaG~~~~~--~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~------ 232 (494)
.-+.... +.+-+++. .+.++++||||||....- ..--..+....+..-|..+++|+|..........
T Consensus 94 sLNLF~tk~dqv~~~iek~-~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY 172 (366)
T KOG1532|consen 94 SLNLFATKFDQVIELIEKR-AEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY 172 (366)
T ss_pred hHHHHHHHHHHHHHHHHHh-hcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence 1121111 12223332 246899999999974321 0000112223344568899999998654321111
Q ss_pred --HHHHhccCCeeEEEEeCccCCCCccchhHHHHhc-------C-CCeEEecc--ccccccccccCc---cchhhcccCC
Q 011076 233 --AQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAAT-------K-SPVIFIGT--GEHMDEFEVFDV---KPFVSRLLGM 297 (494)
Q Consensus 233 --~~~f~~~~~i~~vVltK~D~~~~~g~~ls~~~~~-------g-~Pi~fi~~--Ge~i~~l~~f~p---~~~vs~~~G~ 297 (494)
...++-.+|. ++|+||.|.... +-++.+.... . .--.|+++ +-----|+.|+. ..-+|+.+|.
T Consensus 173 AcSilyktklp~-ivvfNK~Dv~d~-~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~ 250 (366)
T KOG1532|consen 173 ACSILYKTKLPF-IVVFNKTDVSDS-EFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGE 250 (366)
T ss_pred HHHHHHhccCCe-EEEEeccccccc-HHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCC
Confidence 1123344565 999999998644 2333322110 0 01111110 000011233332 2347999999
Q ss_pred CCchHHHHHHHHhCCC
Q 011076 298 GDWSGFMDKIHEVVPM 313 (494)
Q Consensus 298 Gdi~~L~e~i~~~~~~ 313 (494)
| .++++..+.+.+++
T Consensus 251 G-~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 251 G-FDDFFTAVDESVDE 265 (366)
T ss_pred c-HHHHHHHHHHHHHH
Confidence 9 99999999888754
No 71
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.26 E-value=1e-10 Score=108.70 Aligned_cols=180 Identities=16% Similarity=0.149 Sum_probs=94.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhccC
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~~ 183 (494)
|+++|.+||||||+++.|.......++...+.+....+... + .....+..... . .....+
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~-~-----------------~~~~~~ 61 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKE-E-RERGITIKSGV-A-----------------TFEWPD 61 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHH-H-HHcCCCeecce-E-----------------EEeeCC
Confidence 89999999999999999995533333333332221111111 0 01111111000 0 001125
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH--HHHHHHhc-cCCeeEEEEeCccCCCCccc--
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAFKQ-SVSVGAVIVTKMDGHAKGGG-- 258 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~--~~~~~f~~-~~~i~~vVltK~D~~~~~g~-- 258 (494)
++++|+||||......... .....+|.+++|+|+..+.... +....... ..++ .+|+||+|.......
T Consensus 62 ~~~~liDtpG~~~~~~~~~------~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i-~iv~nK~D~~~~~~~~~ 134 (189)
T cd00881 62 RRVNFIDTPGHEDFSSEVI------RGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPI-IVAINKIDRVGEEDLEE 134 (189)
T ss_pred EEEEEEeCCCcHHHHHHHH------HHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCe-EEEEECCCCcchhcHHH
Confidence 6899999999764332221 1223689999999998654322 22233332 2344 999999998652111
Q ss_pred hhHHH-HhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 259 ALSAV-AATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 259 ~ls~~-~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
..... ...+..-.....+..... ....+..++|++.|.| ++.+++.+.+.++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~Sa~~g~g-i~~l~~~l~~~l~ 187 (189)
T cd00881 135 VLREIKELLGLIGFISTKEEGTRN-GLLVPIVPGSALTGIG-VEELLEAIVEHLP 187 (189)
T ss_pred HHHHHHHHHccccccchhhhhccc-CCcceEEEEecccCcC-HHHHHHHHHhhCC
Confidence 11111 111110000000000000 1245667799999999 9999999988875
No 72
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.26 E-value=8.8e-11 Score=132.60 Aligned_cols=163 Identities=15% Similarity=0.187 Sum_probs=101.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.|||||||++|.|. +.++.+++. .+.+++..+.....
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~------~~~~~~v~~-----------~~gtT~d~~~~~~~------------------ 494 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLT------HEERAVVND-----------LAGTTRDPVDEIVE------------------ 494 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHh------CccccccCC-----------CCCCCcCcceeEEE------------------
Confidence 3579999999999999999999 777776664 33344333221111
Q ss_pred ccCCcEEEEeCCCCCchh-----HHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH--HHHHHhc-cCCeeEEEEeCccC
Q 011076 181 KENCDLIIVDTSGRHKQE-----AALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD--QAQAFKQ-SVSVGAVIVTKMDG 252 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~-----~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~--~~~~f~~-~~~i~~vVltK~D~ 252 (494)
..+.++.|+||||..... .+....+........+|.+++|+|++.+....+ .+....+ ..++ .+|+||+|.
T Consensus 495 ~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~pi-IiV~NK~DL 573 (712)
T PRK09518 495 IDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRAL-VLVFNKWDL 573 (712)
T ss_pred ECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCE-EEEEEchhc
Confidence 125678899999974321 123333333344456899999999987644332 2333322 2444 999999998
Q ss_pred CCCccchhHHHH-hcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 253 HAKGGGALSAVA-ATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 253 ~~~~g~~ls~~~-~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
..... ..... ... ..+. ..++.|..++|++.|.| +..|++.+.+.++
T Consensus 574 ~~~~~--~~~~~~~~~---------~~l~-~~~~~~ii~iSAktg~g-v~~L~~~i~~~~~ 621 (712)
T PRK09518 574 MDEFR--RQRLERLWK---------TEFD-RVTWARRVNLSAKTGWH-TNRLAPAMQEALE 621 (712)
T ss_pred CChhH--HHHHHHHHH---------Hhcc-CCCCCCEEEEECCCCCC-HHHHHHHHHHHHH
Confidence 64311 11110 000 1111 12455667899999999 9999999988764
No 73
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=99.25 E-value=2.5e-10 Score=109.29 Aligned_cols=145 Identities=21% Similarity=0.231 Sum_probs=89.0
Q ss_pred CeEEEEEcC-CCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhh----------------------hhccCc
Q 011076 101 PSVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQN----------------------ATKAKI 157 (494)
Q Consensus 101 ~~vI~lvG~-~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~----------------------~~~~~i 157 (494)
+++|+|++. +|+||||++.+||..|++.|++|++|++|++.+.....+... ....++
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~l~~~i~~~~~~~l 96 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKITGLTNFLSGTTDLSDAICDTNIENL 96 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhHHHHhCCCCCCCCHHHHhcCCCCHHHhcccCCCCCE
Confidence 567888855 599999999999999999999999999999876532211100 001233
Q ss_pred ceeccCC-CCChHH-----HHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCc-ccHH
Q 011076 158 PFYGSYT-ESDPVR-----IAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-QAAF 230 (494)
Q Consensus 158 ~~~~~~~-~~dp~~-----i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g-~~~~ 230 (494)
.+..... ..++.. ...+.+..++ ..||+||||||+.....+.. ..+..+|.+++|+++... ....
T Consensus 97 ~~l~~g~~~~~~~~~l~~~~l~~~l~~l~-~~yD~ViiD~pp~~~~~~~~-------~~~~~~D~vilV~~~~~~~~~~~ 168 (204)
T TIGR01007 97 FVITSGPVPPNPTELLQSSNFKTLIETLR-KYFDYIIIDTPPIGTVTDAA-------IIARACDASILVTDAGEIKKRDV 168 (204)
T ss_pred EEEeCCCCCCCHHHHhCcHHHHHHHHHHH-hcCCEEEEeCCCccccchHH-------HHHHhCCeEEEEEECCCCCHHHH
Confidence 3332211 122222 1234455553 57999999999854322110 111246999999998643 2222
Q ss_pred H-HHHHHhc-cCCeeEEEEeCccCC
Q 011076 231 D-QAQAFKQ-SVSVGAVIVTKMDGH 253 (494)
Q Consensus 231 ~-~~~~f~~-~~~i~~vVltK~D~~ 253 (494)
. ..+.+.. ..++.++|+||+|..
T Consensus 169 ~~~~~~l~~~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 169 QKAKEQLEQTGSNFLGVVLNKVDIS 193 (204)
T ss_pred HHHHHHHHhCCCCEEEEEEeCcccc
Confidence 2 2333332 246779999999964
No 74
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.25 E-value=8.1e-11 Score=112.16 Aligned_cols=154 Identities=19% Similarity=0.205 Sum_probs=86.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|++||||||+++.+. +..+.. ...+ ..+.... ...... .
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~------~~~~~~-~~~~-----------~~t~~~~-~~~~~~----------------~ 86 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALT------GADVYA-EDQL-----------FATLDPT-TRRLRL----------------P 86 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHh------cchhcc-CCcc-----------ceeccce-eEEEEe----------------c
Confidence 469999999999999999999 443211 1100 0000000 000000 0
Q ss_pred cCCcEEEEeCCCCCch-hHHHHHHHH-HHHHhcCCCEEEEEecCCCcccHHH---HHHHHhc---cCCeeEEEEeCccCC
Q 011076 182 ENCDLIIVDTSGRHKQ-EAALFEEMR-QVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ---SVSVGAVIVTKMDGH 253 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~-~~~l~~el~-~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~---~~~i~~vVltK~D~~ 253 (494)
..+++.|+||||.... ......... .+.....+|.+++|+|++......+ ....+.. .-.+..+|+||+|..
T Consensus 87 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~ 166 (204)
T cd01878 87 DGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLL 166 (204)
T ss_pred CCceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccC
Confidence 1347899999998432 122222222 2223457899999999986532211 1222222 112349999999986
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
...... . .. .....+..++|+..|.| +..+++.+.+.
T Consensus 167 ~~~~~~----~-------------~~--~~~~~~~~~~Sa~~~~g-i~~l~~~L~~~ 203 (204)
T cd01878 167 DDEELE----E-------------RL--EAGRPDAVFISAKTGEG-LDELLEAIEEL 203 (204)
T ss_pred ChHHHH----H-------------Hh--hcCCCceEEEEcCCCCC-HHHHHHHHHhh
Confidence 542211 0 00 11233557899999999 99999888664
No 75
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.24 E-value=1.7e-10 Score=122.89 Aligned_cols=163 Identities=19% Similarity=0.283 Sum_probs=100.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
+..|+++|.+||||||+++.|. +....+++. .+.+++..+.....
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll------~~~~~~~~~-----------~~gtt~~~~~~~~~------------------ 217 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALL------GEERVIVSD-----------IAGTTRDSIDTPFE------------------ 217 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHh------CCCceeecC-----------CCCceEEEEEEEEE------------------
Confidence 5679999999999999999999 777777765 23344443322111
Q ss_pred ccCCcEEEEeCCCCCchh---HHH--HHHHHHHHHhcCCCEEEEEecCCCcccHHH--HHHHHhc-cCCeeEEEEeCccC
Q 011076 181 KENCDLIIVDTSGRHKQE---AAL--FEEMRQVSEATNPDLVIFVMDSSIGQAAFD--QAQAFKQ-SVSVGAVIVTKMDG 252 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~---~~l--~~el~~i~~~~~~d~vllVvDa~~g~~~~~--~~~~f~~-~~~i~~vVltK~D~ 252 (494)
..+.++.++||||..... +.+ ...+..+.....+|.+++|+|++.+....+ .+....+ ..+ ..+|+||+|.
T Consensus 218 ~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~-~ivv~NK~Dl 296 (435)
T PRK00093 218 RDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRA-LVIVVNKWDL 296 (435)
T ss_pred ECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCc-EEEEEECccC
Confidence 125678999999974321 111 111223334456899999999987654332 2222222 234 4899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 253 ~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.... ....+..... +.+. ...+.|..++|++.|.| +..+++.+.+..
T Consensus 297 ~~~~-~~~~~~~~~~---------~~l~-~~~~~~i~~~SA~~~~g-v~~l~~~i~~~~ 343 (435)
T PRK00093 297 VDEK-TMEEFKKELR---------RRLP-FLDYAPIVFISALTGQG-VDKLLEAIDEAY 343 (435)
T ss_pred CCHH-HHHHHHHHHH---------Hhcc-cccCCCEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 6321 1111111100 1111 12356778899999999 999999987765
No 76
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.24 E-value=7.3e-11 Score=116.08 Aligned_cols=152 Identities=16% Similarity=0.194 Sum_probs=90.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCc-----eEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHH
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWK-----PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~k-----VaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~ 177 (494)
.++++|++|+||||++++++ |.. ..+++..|++.....+.+.++....++. ....++.++ ...++
T Consensus 28 ~i~vvG~~~~GKSt~l~~i~------g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~---~~~~~~~~v-~~~i~ 97 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFV------GRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKG---KKFTDFDEV-RNEIE 97 (240)
T ss_pred eEEEEcCCCccHHHHHHHHh------CCCccccCCCcccccceEEEccCCCCcceEEEecCC---cccCCHHHH-HHHHH
Confidence 59999999999999999999 543 3455556655544444344444333321 112233222 22222
Q ss_pred HHhc---------------------cCCcEEEEeCCCCCch-----hHHHHHHHHH-HHHhcC--CCEEEEEecCCCcc-
Q 011076 178 TFKK---------------------ENCDLIIVDTSGRHKQ-----EAALFEEMRQ-VSEATN--PDLVIFVMDSSIGQ- 227 (494)
Q Consensus 178 ~~~~---------------------~~~dvIIIDTaG~~~~-----~~~l~~el~~-i~~~~~--~d~vllVvDa~~g~- 227 (494)
.+.. .-.++.||||||+... +..+...+.. +..++. .+.+++|+|+..+.
T Consensus 98 ~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~ 177 (240)
T smart00053 98 AETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLA 177 (240)
T ss_pred HHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCC
Confidence 2110 1278999999999642 2333333333 222333 45899999987643
Q ss_pred --cHHHHHHHHhccCCeeEEEEeCccCCCCccchhHHHH
Q 011076 228 --AAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVA 264 (494)
Q Consensus 228 --~~~~~~~~f~~~~~i~~vVltK~D~~~~~g~~ls~~~ 264 (494)
+..+.++.+...-..+.+|+||+|...++..+++++.
T Consensus 178 ~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~~~~~~~~~ 216 (240)
T smart00053 178 NSDALKLAKEVDPQGERTIGVITKLDLMDEGTDARDILE 216 (240)
T ss_pred chhHHHHHHHHHHcCCcEEEEEECCCCCCccHHHHHHHh
Confidence 3356677776555556899999999877655555553
No 77
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.24 E-value=4.3e-11 Score=110.24 Aligned_cols=145 Identities=16% Similarity=0.153 Sum_probs=88.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|++||||||++++|. |..+. . + ....+.+.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~------~~~~~--~----~-----------~~~~v~~~---------------------- 37 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQ------GNYTL--A----R-----------KTQAVEFN---------------------- 37 (158)
T ss_pred EEEEECCCCCCHHHHHHHHc------CCCcc--C----c-----------cceEEEEC----------------------
Confidence 59999999999999999998 54321 0 0 00111110
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH-HHHHHhccCCeeEEEEeCccCCCCccchhH
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD-QAQAFKQSVSVGAVIVTKMDGHAKGGGALS 261 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~-~~~~f~~~~~i~~vVltK~D~~~~~g~~ls 261 (494)
.. -++||||..........++. .....+|.+++|+|++.+..... ....+....+ ..+++||+|..... ...
T Consensus 38 ~~--~~iDtpG~~~~~~~~~~~~~--~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~~~~-ii~v~nK~Dl~~~~--~~~ 110 (158)
T PRK15467 38 DK--GDIDTPGEYFSHPRWYHALI--TTLQDVDMLIYVHGANDPESRLPAGLLDIGVSKR-QIAVISKTDMPDAD--VAA 110 (158)
T ss_pred CC--CcccCCccccCCHHHHHHHH--HHHhcCCEEEEEEeCCCcccccCHHHHhccCCCC-eEEEEEccccCccc--HHH
Confidence 00 15899998544434444442 22457899999999986643222 1222222234 48999999974321 111
Q ss_pred HHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCCC
Q 011076 262 AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (494)
Q Consensus 262 ~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~ 313 (494)
+. +.+..+....|..++|++.|.| ++.|++.+.+.++.
T Consensus 111 ~~-------------~~~~~~~~~~p~~~~Sa~~g~g-i~~l~~~l~~~~~~ 148 (158)
T PRK15467 111 TR-------------KLLLETGFEEPIFELNSHDPQS-VQQLVDYLASLTKQ 148 (158)
T ss_pred HH-------------HHHHHcCCCCCEEEEECCCccC-HHHHHHHHHHhchh
Confidence 11 1222233235778899999999 99999999888753
No 78
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.23 E-value=6.6e-11 Score=108.54 Aligned_cols=153 Identities=18% Similarity=0.232 Sum_probs=85.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhccC
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~~ 183 (494)
|+++|++||||||+++.|. +.++ .++..+ .++.... ++... ..+
T Consensus 3 v~ivG~~~~GKStl~~~l~------~~~~-~v~~~~-----------~~t~~~~--~~~~~----------------~~~ 46 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAIS------NAKP-KIADYP-----------FTTLVPN--LGVVR----------------VDD 46 (170)
T ss_pred eEEECCCCCCHHHHHHHHh------cCCc-cccCCC-----------ccccCCc--ceEEE----------------cCC
Confidence 8999999999999999998 5444 222211 1111100 00000 013
Q ss_pred C-cEEEEeCCCCCchh---HHHHHHHHHHHHhcCCCEEEEEecCCCc-cc--HH-HHHHHHhc------cCCeeEEEEeC
Q 011076 184 C-DLIIVDTSGRHKQE---AALFEEMRQVSEATNPDLVIFVMDSSIG-QA--AF-DQAQAFKQ------SVSVGAVIVTK 249 (494)
Q Consensus 184 ~-dvIIIDTaG~~~~~---~~l~~el~~i~~~~~~d~vllVvDa~~g-~~--~~-~~~~~f~~------~~~i~~vVltK 249 (494)
+ .+.|+||||..... ..+.... +.....+|.+++|+|++.. .. .. ...+.+.. ..++ .+|+||
T Consensus 47 ~~~~~l~DtpG~~~~~~~~~~~~~~~--~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~-ivv~NK 123 (170)
T cd01898 47 GRSFVVADIPGLIEGASEGKGLGHRF--LRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPR-IVVLNK 123 (170)
T ss_pred CCeEEEEecCcccCcccccCCchHHH--HHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCcccccccc-EEEEEc
Confidence 3 78999999974211 1121111 1223357899999999866 21 11 12222221 2334 899999
Q ss_pred ccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 250 MDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 250 ~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
+|...+... ..... +..... ...+...+|+..|.| +..+++.+.+.
T Consensus 124 ~Dl~~~~~~-~~~~~------------~~~~~~-~~~~~~~~Sa~~~~g-i~~l~~~i~~~ 169 (170)
T cd01898 124 IDLLDEEEL-FELLK------------ELLKEL-WGKPVFPISALTGEG-LDELLRKLAEL 169 (170)
T ss_pred hhcCCchhh-HHHHH------------HHHhhC-CCCCEEEEecCCCCC-HHHHHHHHHhh
Confidence 998554221 11111 001111 123456789999999 99999888764
No 79
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=99.22 E-value=2e-10 Score=112.62 Aligned_cols=142 Identities=16% Similarity=0.215 Sum_probs=83.6
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchh-------------HHHHHhh--------hhccCccee
Q 011076 103 VIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-------------FDQLKQN--------ATKAKIPFY 160 (494)
Q Consensus 103 vI~lv-G~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a-------------~~qLk~~--------~~~~~i~~~ 160 (494)
+|+|+ +..||||||++.+||.+|+++|++|++||+|++.+.+ .+.+... .+..++.+.
T Consensus 2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 81 (251)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGMEDKPVTLHDVLAGEADIKDAIYEGPFGVKVI 81 (251)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCccceeEeCCCCCCCCHHHHhcCCCCHHHheEeCCCCEEEE
Confidence 56666 5569999999999999999999999999999954321 1111000 011233333
Q ss_pred ccCCCC-----ChHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc--cHHHHH
Q 011076 161 GSYTES-----DPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQA 233 (494)
Q Consensus 161 ~~~~~~-----dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~--~~~~~~ 233 (494)
+..... .......+.+..+. ..||+||||||+..... . ......+|.+++|+++.... +.....
T Consensus 82 p~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~VIiD~p~~~~~~--~------~~~l~~ad~vliv~~~~~~s~~~~~~~~ 152 (251)
T TIGR01969 82 PAGVSLEGLRKADPDKLEDVLKEII-DDTDFLLIDAPAGLERD--A------VTALAAADELLLVVNPEISSITDALKTK 152 (251)
T ss_pred eCCCCHHHHhhcCHHHHHHHHHHHH-hhCCEEEEeCCCccCHH--H------HHHHHhCCeEEEEECCCCchHHHHHHHH
Confidence 221110 01122344455543 57999999999876432 1 11223578999999986421 112222
Q ss_pred HHHh-ccCCeeEEEEeCccCC
Q 011076 234 QAFK-QSVSVGAVIVTKMDGH 253 (494)
Q Consensus 234 ~~f~-~~~~i~~vVltK~D~~ 253 (494)
.... ...++.++|+|+++..
T Consensus 153 ~~~~~~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 153 IVAEKLGTAILGVVLNRVTRD 173 (251)
T ss_pred HHHHhcCCceEEEEEECCCch
Confidence 2222 1245568999999864
No 80
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.21 E-value=4.3e-10 Score=105.21 Aligned_cols=153 Identities=20% Similarity=0.236 Sum_probs=84.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCccee--ccCCCCCh---------HHHH
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY--GSYTESDP---------VRIA 172 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~--~~~~~~dp---------~~i~ 172 (494)
.+..|.+|+||||++.+||..| ++|++||+|+++|....-+..... ....+. ......+. ....
T Consensus 3 ~v~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (179)
T cd03110 3 AVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLKPEIE-EEEDFIVGGKKAVIDPELCISCGLCGKLV 77 (179)
T ss_pred EEEcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCCCchhhhcCCCcc-ccccceecCCceEEchhhhccccchHHHH
Confidence 3445788999999999999999 799999999998765432211100 000000 00000010 0111
Q ss_pred HHHHHHH-----hccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc--cHHHHHHHHhc-cCCeeE
Q 011076 173 VEGVETF-----KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQ-SVSVGA 244 (494)
Q Consensus 173 ~~~l~~~-----~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~--~~~~~~~~f~~-~~~i~~ 244 (494)
..+... ..+.||||||||||.... .. ......+|.+++|+.+.... +.....+.+.. ..++ +
T Consensus 78 -~~~~~~~~~~~~~~~~d~viiDtpp~~~~--~~------~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~-~ 147 (179)
T cd03110 78 -TEVRKHAKEIAKAEGAELIIIDGPPGIGC--PV------IASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPV-G 147 (179)
T ss_pred -HHHHHHHHHhhhhcCCCEEEEECcCCCcH--HH------HHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCE-E
Confidence 112111 236899999999976532 11 11223579999999987431 12222333332 2344 8
Q ss_pred EEEeCccCCCCc-cchhHHHHhcCCCeE
Q 011076 245 VIVTKMDGHAKG-GGALSAVAATKSPVI 271 (494)
Q Consensus 245 vVltK~D~~~~~-g~~ls~~~~~g~Pi~ 271 (494)
+|+||+|..... ..+.......+.|+.
T Consensus 148 vV~N~~~~~~~~~~~~~~~~~~~~~~vl 175 (179)
T cd03110 148 VVINKYDLNDEIAEEIEDYCEEEGIPIL 175 (179)
T ss_pred EEEeCCCCCcchHHHHHHHHHHcCCCeE
Confidence 999999975432 223344445566543
No 81
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=99.21 E-value=8.1e-11 Score=110.65 Aligned_cols=141 Identities=21% Similarity=0.226 Sum_probs=84.9
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHH------HHhhhhcc-----CcceeccCC--CCChHHH
Q 011076 105 MFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQ------LKQNATKA-----KIPFYGSYT--ESDPVRI 171 (494)
Q Consensus 105 ~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~q------Lk~~~~~~-----~i~~~~~~~--~~dp~~i 171 (494)
+.-+..|+||||++..||.+|+++|++|++|++|++.+...-- ++...... .++...... +......
T Consensus 3 v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T PF01656_consen 3 VTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILFGVYDILREGLENANAILKNFESQDIYQGEEYLDPEL 82 (195)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHTTCHHHHTTSSHGHHCHHESCCHHHHHHHCHCHHHHH
T ss_pred EEcCCCCccHHHHHHHHHhccccccccccccccCcccccHHHHhcchhhccccceehhhhhhccchhhhhhhhhhhHHHH
Confidence 3446679999999999999999999999999999987765321 11111000 000000000 0012234
Q ss_pred HHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc--cHHH---HHHHHhccCCeeEEE
Q 011076 172 AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFD---QAQAFKQSVSVGAVI 246 (494)
Q Consensus 172 ~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~--~~~~---~~~~f~~~~~i~~vV 246 (494)
..+.+..+....||+||||||+..... . ......+|.+++++++.... .... ..+.+....++.++|
T Consensus 83 l~~~l~~l~~~~yD~iiiD~~~~~~~~------~--~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv 154 (195)
T PF01656_consen 83 LREILESLIKSDYDYIIIDTPPGLSDP------V--RNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVV 154 (195)
T ss_dssp HHHHHHHHHHTTSSEEEEEECSSSSHH------H--HHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEE
T ss_pred HHHHHHHhhhccccceeecccccccHH------H--HHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEE
Confidence 566666666556999999999876543 1 12233689999999986421 1111 222222223456999
Q ss_pred EeCccCC
Q 011076 247 VTKMDGH 253 (494)
Q Consensus 247 ltK~D~~ 253 (494)
+||++..
T Consensus 155 ~N~v~~~ 161 (195)
T PF01656_consen 155 INRVDPG 161 (195)
T ss_dssp EEEETSC
T ss_pred EeeeCCC
Confidence 9999865
No 82
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.20 E-value=3.7e-11 Score=113.55 Aligned_cols=173 Identities=19% Similarity=0.243 Sum_probs=95.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhc---cCcceeccCCCCChHHHHHHHHHH
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATK---AKIPFYGSYTESDPVRIAVEGVET 178 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~---~~i~~~~~~~~~dp~~i~~~~l~~ 178 (494)
..|+++|+.|+|||||+.+|..........-..-.. ....+......++ ....+....
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~----~~~~~~~~~e~~~~~ti~~~~~~~~--------------- 64 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETK----NAFLDKHPEERERGITIDLSFISFE--------------- 64 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHH----HCHHHSSHHHHHCTSSSSSEEEEEE---------------
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccc----cccccccchhhhccccccccccccc---------------
Confidence 579999999999999999999665421110000000 0001111111111 011111100
Q ss_pred HhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH--HHHHHHhc-cCCeeEEEEeCccCCCC
Q 011076 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAFKQ-SVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 179 ~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~--~~~~~f~~-~~~i~~vVltK~D~~~~ 255 (494)
.....+.+.||||||... +..++. .....+|.+++|+|+..|.... +.+..... .+| ..+|+||+|....
T Consensus 65 ~~~~~~~i~~iDtPG~~~----f~~~~~--~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~~~~ 137 (188)
T PF00009_consen 65 KNENNRKITLIDTPGHED----FIKEMI--RGLRQADIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMDLIEK 137 (188)
T ss_dssp BTESSEEEEEEEESSSHH----HHHHHH--HHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCTSSHH
T ss_pred ccccccceeecccccccc----eeeccc--ceecccccceeeeecccccccccccccccccccccc-eEEeeeeccchhh
Confidence 012467899999999753 333332 2345789999999998765432 22333222 345 4999999998721
Q ss_pred ccchhHHHHhcCCCeEEecccccc-c--ccc--ccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHM-D--EFE--VFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i-~--~l~--~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
.......... +.+ . ... .+.|..++|++.|.| +..|++.+.+.+|
T Consensus 138 --~~~~~~~~~~---------~~l~~~~~~~~~~~~~vi~~Sa~~g~g-i~~Ll~~l~~~~P 187 (188)
T PF00009_consen 138 --ELEEIIEEIK---------EKLLKEYGENGEEIVPVIPISALTGDG-IDELLEALVELLP 187 (188)
T ss_dssp --HHHHHHHHHH---------HHHHHHTTSTTTSTEEEEEEBTTTTBT-HHHHHHHHHHHS-
T ss_pred --hHHHHHHHHH---------HHhccccccCccccceEEEEecCCCCC-HHHHHHHHHHhCc
Confidence 1111111000 000 0 011 245788999999999 9999999999876
No 83
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=99.20 E-value=1.9e-10 Score=114.34 Aligned_cols=42 Identities=26% Similarity=0.242 Sum_probs=38.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcch
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~ 143 (494)
++|+|+|..||||||++.+||.+|+++|+||++||+|++...
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~ 43 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADS 43 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCc
Confidence 468888999999999999999999999999999999997543
No 84
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.20 E-value=1.9e-10 Score=115.52 Aligned_cols=119 Identities=20% Similarity=0.297 Sum_probs=76.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
..+|+++|.|||||||+++++. +.++-+.+. ++||+. +. .+ ++.
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT------~AkpEvA~Y------------PFTTK~-i~-vG----------------hfe 211 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLT------TAKPEVAPY------------PFTTKG-IH-VG----------------HFE 211 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHh------cCCCccCCC------------Cccccc-ee-Ee----------------eee
Confidence 3479999999999999999999 777665553 344432 21 11 222
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHH--HHHHHHhcC-CCEEEEEecCC--CcccHHHHHHHHhc---cC-CeeEEEEeCcc
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEE--MRQVSEATN-PDLVIFVMDSS--IGQAAFDQAQAFKQ---SV-SVGAVIVTKMD 251 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~e--l~~i~~~~~-~d~vllVvDa~--~g~~~~~~~~~f~~---~~-~i~~vVltK~D 251 (494)
..+..+=+|||||.+....+-+.+ .+.+.+... .+.++|++|++ +|.....+...|++ .+ .+..+|+||+|
T Consensus 212 ~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D 291 (346)
T COG1084 212 RGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKID 291 (346)
T ss_pred cCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 235578899999998655332222 333443322 67899999997 45555555554443 22 24599999999
Q ss_pred CCCC
Q 011076 252 GHAK 255 (494)
Q Consensus 252 ~~~~ 255 (494)
....
T Consensus 292 ~~~~ 295 (346)
T COG1084 292 IADE 295 (346)
T ss_pred ccch
Confidence 7643
No 85
>PRK09866 hypothetical protein; Provisional
Probab=99.19 E-value=4.2e-10 Score=122.20 Aligned_cols=113 Identities=16% Similarity=0.108 Sum_probs=73.6
Q ss_pred CCcEEEEeCCCCCchhHH-HHHHHHHHHHhcCCCEEEEEecCCCcc--cHHHHHHHHhccC--CeeEEEEeCccCCCCcc
Q 011076 183 NCDLIIVDTSGRHKQEAA-LFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSV--SVGAVIVTKMDGHAKGG 257 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~-l~~el~~i~~~~~~d~vllVvDa~~g~--~~~~~~~~f~~~~--~i~~vVltK~D~~~~~g 257 (494)
.+++|||||||.+..... +.+.+.. ....+|.++||+|+..+. +....++.+.+.- .+.++|+||+|...+..
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~e--qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQ--QLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHH--HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCccc
Confidence 478999999999875433 4444443 355789999999998643 3333444444322 14489999999864332
Q ss_pred chhHHHHhcCCCeEEeccccccc-----cccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 258 GALSAVAATKSPVIFIGTGEHMD-----EFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 258 ~~ls~~~~~g~Pi~fi~~Ge~i~-----~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
.....+. +.+. ...+|...+++|++.|.| ++.|++.+...
T Consensus 307 ddkE~Ll------------e~V~~~L~q~~i~f~eIfPVSAlkG~n-id~LLdeI~~~ 351 (741)
T PRK09866 307 DDADQVR------------ALISGTLMKGCITPQQIFPVSSMWGYL-ANRARHELANN 351 (741)
T ss_pred chHHHHH------------HHHHHHHHhcCCCCceEEEEeCCCCCC-HHHHHHHHHhC
Confidence 1122211 1111 122467788999999999 99999999884
No 86
>PRK11670 antiporter inner membrane protein; Provisional
Probab=99.18 E-value=6.7e-10 Score=116.11 Aligned_cols=148 Identities=16% Similarity=0.172 Sum_probs=86.7
Q ss_pred CCeEEEEE-cCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHH--h-hhhc-cC---ccee--ccC------
Q 011076 100 KPSVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK--Q-NATK-AK---IPFY--GSY------ 163 (494)
Q Consensus 100 ~~~vI~lv-G~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk--~-~~~~-~~---i~~~--~~~------ 163 (494)
..++|+++ |..||||||++.+||..|++.|+||++||+|+|++....-+. . ..+. .+ +|+. +..
T Consensus 106 ~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~~~~lg~~~~~~~~~~~~~i~p~~~~g~~~~~~~~ 185 (369)
T PRK11670 106 VKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAEDQRPTSPDGTHMAPIMAHGLATNSIGY 185 (369)
T ss_pred CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCcchhcCCcccCCcccCCceeeeeeccCcccccHHH
Confidence 34677776 888999999999999999999999999999999986633221 0 0000 00 1100 000
Q ss_pred --CCCC--------hHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCc--ccHHH
Q 011076 164 --TESD--------PVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFD 231 (494)
Q Consensus 164 --~~~d--------p~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g--~~~~~ 231 (494)
...+ ......+.+.....+.|||||||||+... +..+ .+.....+|.+++|+.+..- .++..
T Consensus 186 l~~~~~~~i~~g~~~~~~l~~~l~~~~~~~yDyvIID~PPg~g-d~~l-----~~~~l~aad~viiV~tp~~~s~~da~~ 259 (369)
T PRK11670 186 LVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTG-DIQL-----TLAQNIPVTGAVVVTTPQDIALIDAKK 259 (369)
T ss_pred hcCcCcceeecCcchHHHHHHHHHHHhhccCCEEEEeCCCCCc-hHHH-----HHhhhccCCeEEEEecCchhHHHHHHH
Confidence 0001 01122222322224579999999987642 2111 12233456888888866421 12333
Q ss_pred HHHHHhc-cCCeeEEEEeCccCC
Q 011076 232 QAQAFKQ-SVSVGAVIVTKMDGH 253 (494)
Q Consensus 232 ~~~~f~~-~~~i~~vVltK~D~~ 253 (494)
....+.+ .+++.++|+|+.+..
T Consensus 260 ~i~~~~~~~~~ilGiV~Nm~~~~ 282 (369)
T PRK11670 260 GIVMFEKVEVPVLGIVENMSMHI 282 (369)
T ss_pred HHHHHhccCCCeEEEEEcCCccc
Confidence 3344433 356789999998754
No 87
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.17 E-value=3.2e-10 Score=103.63 Aligned_cols=160 Identities=21% Similarity=0.193 Sum_probs=87.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
+|+++|.+||||||++++|. +.++..... + ..+. .+..+..... . ..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~------~~~~~~~~~----~--------~~t~-~~~~~~~~~~-~-------------~~ 48 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIR------KTNVAAGEA----G--------GITQ-HIGAFEVPAE-V-------------LK 48 (168)
T ss_pred EEEEEecCCCCHHHHHHHHH------hcccccccC----C--------CeEE-eeccEEEecc-c-------------CC
Confidence 59999999999999999998 333322100 0 0010 0100100000 0 12
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc--HHHHHHHHhc-cCCeeEEEEeCccCCCCcc-c
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQ-SVSVGAVIVTKMDGHAKGG-G 258 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~--~~~~~~~f~~-~~~i~~vVltK~D~~~~~g-~ 258 (494)
++++.++||||...... +. ......+|.+++|+|++.+.. .......+.. ..|+ .+|+||+|...... .
T Consensus 49 ~~~~~iiDtpG~~~~~~-----~~-~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~-ivv~NK~Dl~~~~~~~ 121 (168)
T cd01887 49 IPGITFIDTPGHEAFTN-----MR-ARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPF-IVALNKIDKPNANPER 121 (168)
T ss_pred cceEEEEeCCCcHHHHH-----HH-HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCE-EEEEEceecccccHHH
Confidence 67899999999743221 11 112346799999999986532 2222222322 2444 89999999863321 1
Q ss_pred hhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 259 ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 259 ~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
........... + ........+...+|+..|.| +..|++.+.+..
T Consensus 122 ~~~~~~~~~~~------~--~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 165 (168)
T cd01887 122 VKNELSELGLQ------G--EDEWGGDVQIVPTSAKTGEG-IDDLLEAILLLA 165 (168)
T ss_pred HHHHHHHhhcc------c--cccccCcCcEEEeecccCCC-HHHHHHHHHHhh
Confidence 11111111100 0 00112234567789999999 999999987764
No 88
>CHL00175 minD septum-site determining protein; Validated
Probab=99.17 E-value=5.3e-10 Score=112.30 Aligned_cols=146 Identities=17% Similarity=0.164 Sum_probs=85.2
Q ss_pred CCeEEEEE-cCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHh-----------hh-------------hc
Q 011076 100 KPSVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQ-----------NA-------------TK 154 (494)
Q Consensus 100 ~~~vI~lv-G~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~-----------~~-------------~~ 154 (494)
.+++|+|+ |..||||||++.+||.+|++.|++|++|++|++.+.....+.. .. ..
T Consensus 14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~~lg~~~~~~~~~~d~l~~~~~l~~~~~~~~~~ 93 (281)
T CHL00175 14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVLYTAMDVLEGECRLDQALIRDKRW 93 (281)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhhhcCCCCCCCCCHHHHHcCCCChhhheeecCCC
Confidence 35678887 4789999999999999999999999999999975432211100 00 00
Q ss_pred cCcceeccCCCCCh----HHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc--c
Q 011076 155 AKIPFYGSYTESDP----VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--A 228 (494)
Q Consensus 155 ~~i~~~~~~~~~dp----~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~--~ 228 (494)
.++.+......... .....+.+..++...|||||||||+..... .. .....+|.+++|+++.... +
T Consensus 94 ~~l~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~VIiDtpp~~~~~--~~------~~l~~aD~viiV~~p~~~si~~ 165 (281)
T CHL00175 94 KNLSLLAISKNRQRYNVTRKNMNMLVDSLKNRGYDYILIDCPAGIDVG--FI------NAIAPAQEAIVVTTPEITAIRD 165 (281)
T ss_pred CCeEEEeCCCchhhccCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCHH--HH------HHHHhcCeeEEEcCCChHHHHH
Confidence 12222221111111 112344455554447999999998875322 11 1122468999999886421 1
Q ss_pred HHHHHHHHhcc-CCeeEEEEeCccCC
Q 011076 229 AFDQAQAFKQS-VSVGAVIVTKMDGH 253 (494)
Q Consensus 229 ~~~~~~~f~~~-~~i~~vVltK~D~~ 253 (494)
.......+.+. ....++|+|+++..
T Consensus 166 ~~~~~~~l~~~~~~~~~lvvN~~~~~ 191 (281)
T CHL00175 166 ADRVAGLLEANGIYNVKLLVNRVRPD 191 (281)
T ss_pred HHHHHHHHHHcCCCceEEEEeccChh
Confidence 22223333321 22348899999854
No 89
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.16 E-value=3e-10 Score=128.57 Aligned_cols=145 Identities=21% Similarity=0.255 Sum_probs=85.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|.|||||||++|+|. |.+.. |.. .+..|..... +. +..
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Lt------g~~~~-vgn-----------~pGvTve~k~--g~----------------~~~ 47 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLT------GARQR-VGN-----------WAGVTVERKE--GQ----------------FST 47 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHh------CCCCc-cCC-----------CCCceEeeEE--EE----------------EEc
Confidence 469999999999999999998 65442 222 1111111110 00 011
Q ss_pred cCCcEEEEeCCCCCchhH-----HHHHHHH-HHHHhcCCCEEEEEecCCCcccHHHHHHHHhc-cCCeeEEEEeCccCCC
Q 011076 182 ENCDLIIVDTSGRHKQEA-----ALFEEMR-QVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~-----~l~~el~-~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~-~~~i~~vVltK~D~~~ 254 (494)
.++++.++||||...... .+.+.+. .......+|.+++|+|++.............+ ..| ..+|+||+|...
T Consensus 48 ~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l~l~~ql~e~giP-vIvVlNK~Dl~~ 126 (772)
T PRK09554 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIP-CIVALNMLDIAE 126 (772)
T ss_pred CceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhhHHHHHHHHHcCCC-EEEEEEchhhhh
Confidence 367889999999864321 1222221 11223378999999999865443333233333 244 499999999865
Q ss_pred Cccchh---HHHHhcCCCeEEec--ccccccccc
Q 011076 255 KGGGAL---SAVAATKSPVIFIG--TGEHMDEFE 283 (494)
Q Consensus 255 ~~g~~l---s~~~~~g~Pi~fi~--~Ge~i~~l~ 283 (494)
+.+... ......|.|+..++ +|++++++.
T Consensus 127 ~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~ 160 (772)
T PRK09554 127 KQNIRIDIDALSARLGCPVIPLVSTRGRGIEALK 160 (772)
T ss_pred ccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHH
Confidence 443222 23345788887777 667766543
No 90
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.16 E-value=3.3e-10 Score=100.54 Aligned_cols=157 Identities=15% Similarity=0.126 Sum_probs=88.8
Q ss_pred EEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhccCCc
Q 011076 106 FVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCD 185 (494)
Q Consensus 106 lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~~~d 185 (494)
++|++||||||++++|. +..+..++.+.. .+........... ..++
T Consensus 1 i~G~~gsGKstl~~~l~------~~~~~~~~~~~~-----------~~~~~~~~~~~~~-----------------~~~~ 46 (163)
T cd00880 1 LFGRTNAGKSSLLNALL------GQEVAIVSPVPG-----------TTTDPVEYVWELG-----------------PLGP 46 (163)
T ss_pred CcCCCCCCHHHHHHHHh------CccccccCCCCC-----------cEECCeEEEEEec-----------------CCCc
Confidence 57999999999999998 544443332111 1111111010000 1578
Q ss_pred EEEEeCCCCCchhHHHH---HHHHHHHHhcCCCEEEEEecCCCcccHHHH--HHHHhccCCeeEEEEeCccCCCCccchh
Q 011076 186 LIIVDTSGRHKQEAALF---EEMRQVSEATNPDLVIFVMDSSIGQAAFDQ--AQAFKQSVSVGAVIVTKMDGHAKGGGAL 260 (494)
Q Consensus 186 vIIIDTaG~~~~~~~l~---~el~~i~~~~~~d~vllVvDa~~g~~~~~~--~~~f~~~~~i~~vVltK~D~~~~~g~~l 260 (494)
++++||||......... ... ......+|.+++|+|+......... ...+.....+..+|+||+|.........
T Consensus 47 ~~~~Dt~g~~~~~~~~~~~~~~~--~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~ 124 (163)
T cd00880 47 VVLIDTPGIDEAGGLGREREELA--RRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEE 124 (163)
T ss_pred EEEEECCCCCccccchhhHHHHH--HHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHH
Confidence 99999999864331111 111 1223468999999999876544333 2233222233489999999865432111
Q ss_pred HHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 261 SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 261 s~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
.... ...........+...+|+..+.| ++.+++.+.+.
T Consensus 125 ~~~~-----------~~~~~~~~~~~~~~~~sa~~~~~-v~~l~~~l~~~ 162 (163)
T cd00880 125 LLEL-----------RLLILLLLLGLPVIAVSALTGEG-IDELREALIEA 162 (163)
T ss_pred HHHH-----------HHhhcccccCCceEEEeeeccCC-HHHHHHHHHhh
Confidence 1100 01112233455667789999999 99888887654
No 91
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=99.15 E-value=7.1e-10 Score=110.69 Aligned_cols=41 Identities=27% Similarity=0.262 Sum_probs=37.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~ 142 (494)
++|+++|..||||||++.+||.+|+++|+||++||+|++..
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~~ 43 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHD 43 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCcc
Confidence 57888899999999999999999999999999999998653
No 92
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=99.15 E-value=3.2e-10 Score=113.65 Aligned_cols=41 Identities=24% Similarity=0.190 Sum_probs=38.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~ 142 (494)
++|+|+|..||||||++.+||..|++.|+||++||+|++..
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~ 42 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKAD 42 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecCCccc
Confidence 46888899999999999999999999999999999999754
No 93
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.15 E-value=5.5e-10 Score=108.31 Aligned_cols=146 Identities=19% Similarity=0.135 Sum_probs=85.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCc-------chhHHHHH---------hhhhcc-----------
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR-------AGAFDQLK---------QNATKA----------- 155 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r-------~~a~~qLk---------~~~~~~----------- 155 (494)
++++.|.+|+||||++.+||.++++.|++|.+|++|+.+ ++..+.+. .+..+.
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPEIAPNLYREEVDATRRVERAWG 80 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcccccccCCCchhhhccCChHHHHHHHHHHHHHHHHhhhccc
Confidence 378899999999999999999999999999999999988 33333222 010000
Q ss_pred --Ccceec-cCCCCChHHH--HHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcC--CCEEEEEecCCCcc-
Q 011076 156 --KIPFYG-SYTESDPVRI--AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATN--PDLVIFVMDSSIGQ- 227 (494)
Q Consensus 156 --~i~~~~-~~~~~dp~~i--~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~--~d~vllVvDa~~g~- 227 (494)
+..+.. .....++.++ ..+.+..++...||+||||||+.....+.+ ......+ .+.+++|+.+....
T Consensus 81 ~~~~~~~~~~~~~p~~~ell~~~~l~~~l~~~~yD~IIiD~pp~~~~~~~l-----~~~~l~~~~~~~vllV~~p~~~s~ 155 (217)
T cd02035 81 GEGGLMLELAAALPGIEELASLLAVFREFSEGLYDVIVFDTAPTGHTLRLL-----VRELLTDPERTSFRLVTLPEKLPL 155 (217)
T ss_pred chhhhHHhHhccCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCchHHHHHH-----HHHHccCCCceEEEEEeCCCccHH
Confidence 000000 0111223332 222333444444999999999864332222 1112223 37889999886321
Q ss_pred -cHHHHHHHHhcc-CCeeEEEEeCccCC
Q 011076 228 -AAFDQAQAFKQS-VSVGAVIVTKMDGH 253 (494)
Q Consensus 228 -~~~~~~~~f~~~-~~i~~vVltK~D~~ 253 (494)
+.......++.. .++.++|+|++...
T Consensus 156 ~~~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 156 YETERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 222233333332 45679999998754
No 94
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=99.15 E-value=7.2e-10 Score=112.27 Aligned_cols=157 Identities=17% Similarity=0.184 Sum_probs=87.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHH-----------HHHh--------------hhhccCcc
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFD-----------QLKQ--------------NATKAKIP 158 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~-----------qLk~--------------~~~~~~i~ 158 (494)
|+++|..||||||++.+||..|++.|+||++|++|++...+.- -+.. ..+..++.
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t~~l~g~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~l~ 82 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDSTFTLTGFLIPTIIDTLQSKDYHYEDVWPEDVIYKGYGGVD 82 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCcccccccCcCCCCHHHHHhhcccccccCChhheEEeCCCCeE
Confidence 8999999999999999999999999999999999997643311 0100 00012333
Q ss_pred eeccCCCCC------h-HHHHHHHHHHHhc-cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc--c
Q 011076 159 FYGSYTESD------P-VRIAVEGVETFKK-ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--A 228 (494)
Q Consensus 159 ~~~~~~~~d------p-~~i~~~~l~~~~~-~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~--~ 228 (494)
+.+...... . .......+..+.. .+||||||||||..... .+ ......+|.+++++++.... .
T Consensus 83 lip~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~yD~IiIDt~~~l~~~-a~------~aal~~AD~viIp~~p~~~sl~~ 155 (290)
T CHL00072 83 CVEAGGPPAGAGCGGYVVGETVKLLKELNAFYEYDIILFDVLGDVVCG-GF------AAPLNYADYCIIITDNGFDALFA 155 (290)
T ss_pred EEeCCCCCCccchhhcccHHHHHHHHHhhccccCCEEEEecCCcceec-hh------hhhhhcCCEEEEEecCCHHHHHH
Confidence 322111000 0 0000111222221 47999999998874321 11 01134579999999876321 1
Q ss_pred H---HHHHHHHh--ccCCeeEEEEeCccCCCCccchhHHHHhcCCCe
Q 011076 229 A---FDQAQAFK--QSVSVGAVIVTKMDGHAKGGGALSAVAATKSPV 270 (494)
Q Consensus 229 ~---~~~~~~f~--~~~~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi 270 (494)
+ .+.++.+. ..+.+.++|+|+.+... .........+.|+
T Consensus 156 ~~~l~~~i~~~~~~~~l~~~gvv~n~~~~~~---~~~~~~~~~~~~v 199 (290)
T CHL00072 156 ANRIAASVREKARTHPLRLAGLVGNRTSKRD---LIDKYVEACPMPV 199 (290)
T ss_pred HHHHHHHHHHHhccCCCceEEEEEeCCCchh---HHHHHHHHcCCce
Confidence 1 12222222 12446789999998422 2223334455554
No 95
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=99.15 E-value=9.8e-10 Score=101.98 Aligned_cols=124 Identities=20% Similarity=0.194 Sum_probs=75.7
Q ss_pred EEEE-cCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 104 IMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 104 I~lv-G~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
|+++ +..|+||||++.+||.+|+++|++|++|++|++.+.....+ +..... ..+..++ +
T Consensus 2 i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~-------~~~~~~---~~~~~~~----~------ 61 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLIL-------GLENRV---VYTLHDV----L------ 61 (179)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhc-------cccccC---Ccchhhc----c------
Confidence 4444 56799999999999999999999999999999765332111 110000 0000010 0
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc--cHHHHHHHHhc-cCCeeEEEEeCccCCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQ-SVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~--~~~~~~~~f~~-~~~i~~vVltK~D~~~~ 255 (494)
.-|+|||||||..... .. .....+|.+++|+++.... ......+.+.. ..+..++|+|++|....
T Consensus 62 ~~d~viiD~p~~~~~~--~~------~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~ 129 (179)
T cd02036 62 AGDYILIDSPAGIERG--FI------TAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMV 129 (179)
T ss_pred cCCEEEEECCCCCcHH--HH------HHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCccccc
Confidence 1199999999875432 11 1123578899999887432 12222233322 24456899999987643
No 96
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.14 E-value=9e-10 Score=107.91 Aligned_cols=144 Identities=18% Similarity=0.154 Sum_probs=83.9
Q ss_pred eEEEEEc-CCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhH-------------HHHH------hh--hhccCcce
Q 011076 102 SVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-------------DQLK------QN--ATKAKIPF 159 (494)
Q Consensus 102 ~vI~lvG-~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~-------------~qLk------~~--~~~~~i~~ 159 (494)
++|+|++ ..|+||||++.+||..|+++|+||++||+|++.+... +.+. .. ....++.+
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 81 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQNLLRLHFGMDWSVRDGWARALLNGEPWAAAAYRSSDGVLF 81 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcchHHHHhCCCCccCCcHHHHHhcCCChHHhHhhcCCCeEE
Confidence 3677775 6799999999999999999999999999999764221 1110 00 01233433
Q ss_pred eccCCCCC---------hHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc-cH
Q 011076 160 YGSYTESD---------PVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ-AA 229 (494)
Q Consensus 160 ~~~~~~~d---------p~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~-~~ 229 (494)
.+...... ......+.+..+....+|+||||||+..... . ......+|.+++|+.+..-. ..
T Consensus 82 ip~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~viiD~pp~~~~~---~-----~~~l~~ad~vii~~~~~~~s~~~ 153 (246)
T TIGR03371 82 LPFGDLSADEREAYQAHDAGWLARLLQQLDLAARDWVLIDVPRGPSPI---T-----RQALAAADLVLVVVNADAACYAT 153 (246)
T ss_pred ecCCCCcHHHHHHHhhcCHHHHHHHHHhcccCCCCEEEEECCCCchHH---H-----HHHHHhCCeEEEEeCCCHHHHHH
Confidence 33221110 1122334455555445699999999964321 1 11223579999999886311 11
Q ss_pred HH-HHHHHhc----cCCeeEEEEeCccCCC
Q 011076 230 FD-QAQAFKQ----SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 230 ~~-~~~~f~~----~~~i~~vVltK~D~~~ 254 (494)
.. ....+.+ ..+ .++|+|++|...
T Consensus 154 ~~~~~~~l~~~~~~~~~-~~iv~n~~~~~~ 182 (246)
T TIGR03371 154 LHQQALALFAGSGPRIG-PHFLINQFDPAR 182 (246)
T ss_pred HHHHHHHHhhccccccc-ceEEeeccCcch
Confidence 11 2222222 122 479999998653
No 97
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.14 E-value=2.3e-10 Score=108.82 Aligned_cols=119 Identities=15% Similarity=0.176 Sum_probs=72.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|.|||||||++|.|+ |.+++.+..+.. ..+..... +. ....
T Consensus 2 ~i~lvG~~g~GKSsl~N~il------g~~~~~~~~~~~---------~~T~~~~~--~~-----------------~~~~ 47 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTIL------GREVFESKLSAS---------SVTKTCQK--ES-----------------AVWD 47 (196)
T ss_pred EEEEECCCCCCHHHHHHHhh------CCCccccccCCC---------Ccccccce--ee-----------------EEEC
Confidence 48999999999999999999 887765543210 00110000 00 0013
Q ss_pred CCcEEEEeCCCCCch---hHHHHHHHHHHHH--hcCCCEEEEEecCCC-cccHHHHHHHHhcc-----CCeeEEEEeCcc
Q 011076 183 NCDLIIVDTSGRHKQ---EAALFEEMRQVSE--ATNPDLVIFVMDSSI-GQAAFDQAQAFKQS-----VSVGAVIVTKMD 251 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~---~~~l~~el~~i~~--~~~~d~vllVvDa~~-g~~~~~~~~~f~~~-----~~i~~vVltK~D 251 (494)
+..+.+|||||.... .+.+..++..... ...++.+++|+|+.. ..+....++.+.+. .....+|+|+.|
T Consensus 48 ~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d 127 (196)
T cd01852 48 GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGEKVLDHTIVLFTRGD 127 (196)
T ss_pred CeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChHhHhcEEEEEECcc
Confidence 568899999999764 2345555544333 235789999999875 22222334443332 244589999999
Q ss_pred CCCC
Q 011076 252 GHAK 255 (494)
Q Consensus 252 ~~~~ 255 (494)
....
T Consensus 128 ~l~~ 131 (196)
T cd01852 128 DLEG 131 (196)
T ss_pred ccCC
Confidence 7643
No 98
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=99.14 E-value=5.2e-10 Score=111.57 Aligned_cols=143 Identities=19% Similarity=0.204 Sum_probs=81.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchh-----------HHHHHh--------------hhhccCc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-----------FDQLKQ--------------NATKAKI 157 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a-----------~~qLk~--------------~~~~~~i 157 (494)
+|++.|..||||||++.+||.+|+++|+||++|++|++.... .+-+.. .....++
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l 81 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDSTFTLTGFLIPTVIDILEEVDFHYEELWPEDVIYEGYGGV 81 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCCcceeccCCCCCCHHHHHHhccccccCCChhheEEECCCCc
Confidence 578889999999999999999999999999999999864221 111110 0001234
Q ss_pred ceeccCCCC------Ch-HHHHHHHHHHH-hccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc-c
Q 011076 158 PFYGSYTES------DP-VRIAVEGVETF-KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ-A 228 (494)
Q Consensus 158 ~~~~~~~~~------dp-~~i~~~~l~~~-~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~-~ 228 (494)
.+....... .. .......++.+ ....||+|||||||...... + ......+|.+++++.++... .
T Consensus 82 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~vIIDt~g~~~~~~-~------~~al~~aD~vlip~~p~~~~l~ 154 (267)
T cd02032 82 DCVEAGGPPAGAGCGGYVVGETVKLLKELNLFEEYDVILFDVLGDVVCGG-F------AAPLNYADYALIVTDNDFDSIF 154 (267)
T ss_pred EEEEcCCCCCCccccchHHHHHHHHHHHccccccCCEEEEeCCCCccccc-c------hhhhhhcCEEEEEecCCcccHH
Confidence 333221100 00 00011112221 13479999999998754221 1 01133579999999886321 1
Q ss_pred H-HHH---HHHH--hccCCeeEEEEeCccC
Q 011076 229 A-FDQ---AQAF--KQSVSVGAVIVTKMDG 252 (494)
Q Consensus 229 ~-~~~---~~~f--~~~~~i~~vVltK~D~ 252 (494)
. ... +... +..+++.++|+|++|.
T Consensus 155 ~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 155 AANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred HHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 1 112 2222 1234556899999985
No 99
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.14 E-value=1.7e-09 Score=104.07 Aligned_cols=141 Identities=19% Similarity=0.193 Sum_probs=84.7
Q ss_pred CCeEEEEEcC-CCCcHHHHHHHHHHHHHh-cCCceEEEEcccCcchhHH------------HHH-------hhhh---cc
Q 011076 100 KPSVIMFVGL-QGSGKTTTCTKYAYYHQK-KGWKPALVCADTFRAGAFD------------QLK-------QNAT---KA 155 (494)
Q Consensus 100 ~~~vI~lvG~-~GvGKTTl~~kLA~~l~~-~g~kVaiVs~D~~r~~a~~------------qLk-------~~~~---~~ 155 (494)
..++|+|+|. .|+||||++.+||.+|++ .|++|++|++|++.+.... .+. .... ..
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~i~~~~~~ 113 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEAEPGLSDCLLDPVLDLADVLVPTNIG 113 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCCCCCCCHHHHHcCCCCCHHHHhccCCCC
Confidence 3568999864 599999999999999996 6999999999997754321 111 1101 12
Q ss_pred CcceeccCCC-CChHH-----HHHHHHHHHhcc-CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCc-c
Q 011076 156 KIPFYGSYTE-SDPVR-----IAVEGVETFKKE-NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-Q 227 (494)
Q Consensus 156 ~i~~~~~~~~-~dp~~-----i~~~~l~~~~~~-~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g-~ 227 (494)
++.+.+.... ..+.. ...+.+..++.+ .+||||||||+....... ..+ ...+|.+++|+.+... .
T Consensus 114 ~l~vl~~g~~~~~~~~~~~~~~l~~~l~~l~~~y~~D~IiiD~pp~~~~~~~-----~~l--~~~aD~viiV~~~~~~~~ 186 (207)
T TIGR03018 114 RLSLLPAGRRHPNPTELLASQRMRSLLHELARRYPDRIIIIDTPPLLVFSEA-----RAL--ARLVGQIVLVVEEGRTTQ 186 (207)
T ss_pred CEEEEeCCCCCCCHHHHhCcHHHHHHHHHHHhhCCCCEEEEECCCCcchhHH-----HHH--HHhCCEEEEEEECCCCCH
Confidence 3333322221 11211 234445555443 239999999988753211 111 1247999999998632 2
Q ss_pred cH-HHHHHHHhccCCeeEEEEe
Q 011076 228 AA-FDQAQAFKQSVSVGAVIVT 248 (494)
Q Consensus 228 ~~-~~~~~~f~~~~~i~~vVlt 248 (494)
.. .+....++ ..++.|+|+|
T Consensus 187 ~~~~~~~~~l~-~~~~~G~v~N 207 (207)
T TIGR03018 187 EAVKEALSALE-SCKVLGVVLN 207 (207)
T ss_pred HHHHHHHHHhc-CCCeEEEEeC
Confidence 22 23334444 5677799987
No 100
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.14 E-value=1.8e-10 Score=118.86 Aligned_cols=158 Identities=15% Similarity=0.206 Sum_probs=89.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
-|+|+|.|||||||++++|. +.++. |+. .+++|..-. .+.... ..
T Consensus 160 dVglVG~PNaGKSTLln~ls------~a~~~-va~-----------ypfTT~~p~--~G~v~~---------------~~ 204 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVS------AAKPK-IAD-----------YPFTTLHPN--LGVVRV---------------DD 204 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHH------cCCCc-cCC-----------CCCceeCce--EEEEEe---------------CC
Confidence 38999999999999999998 55554 344 222333211 111110 02
Q ss_pred CCcEEEEeCCCCCchhH---HHHHHHHHHHHhcCCCEEEEEecCCCcc--cHHH----HHHHHhcc--CCeeEEEEeCcc
Q 011076 183 NCDLIIVDTSGRHKQEA---ALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFD----QAQAFKQS--VSVGAVIVTKMD 251 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~---~l~~el~~i~~~~~~d~vllVvDa~~g~--~~~~----~~~~f~~~--~~i~~vVltK~D 251 (494)
+..++|+||||...... .+.... +.....++.+++|+|++... +... .+..+... -.+..+|+||+|
T Consensus 205 ~~~~~i~D~PGli~ga~~~~gLg~~f--lrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiD 282 (335)
T PRK12299 205 YKSFVIADIPGLIEGASEGAGLGHRF--LKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKID 282 (335)
T ss_pred CcEEEEEeCCCccCCCCccccHHHHH--HHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcc
Confidence 45689999999864221 222221 12233578999999987432 1111 12222221 123489999999
Q ss_pred CCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 252 GHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 252 ~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
............. .....+ -.+..++|++.|.| ++.|++.+.+.+.
T Consensus 283 L~~~~~~~~~~~~------------~~~~~~--~~~i~~iSAktg~G-I~eL~~~L~~~l~ 328 (335)
T PRK12299 283 LLDEEEEREKRAA------------LELAAL--GGPVFLISAVTGEG-LDELLRALWELLE 328 (335)
T ss_pred cCCchhHHHHHHH------------HHHHhc--CCCEEEEEcCCCCC-HHHHHHHHHHHHH
Confidence 8543211111111 000111 13456789999999 9999999988764
No 101
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=99.13 E-value=4.9e-10 Score=103.45 Aligned_cols=144 Identities=21% Similarity=0.254 Sum_probs=84.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCC-------CCChHHHHHHH
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYT-------ESDPVRIAVEG 175 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~-------~~dp~~i~~~~ 175 (494)
+++++|+.|+||||++..++... .+++++++..|.....-..++.. ..+.+++.... ..+......+.
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~--~~~~~~~i~~~~G~~~~d~~~~~---~~~~~v~~l~~GCiCC~~~~~l~~~l~~l 76 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQ--HGRKIAVIENEFGEVGIDNQLVV---DTDEEIIEMNNGCICCTVRGDLIRALLDL 76 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcc--cCCcEEEEecCCCccchhHHHHh---CCCceEEEeCCCEeEeeCchhHHHHHHHH
Confidence 68899999999999999988653 48899999888654433222211 12222332211 12222222222
Q ss_pred HHHH--hccCCcEEEEeCCCCCchhHHHHHHH-H--HHHHhcCCCEEEEEecCCCcccHHHHHHHHhccC-CeeEEEEeC
Q 011076 176 VETF--KKENCDLIIVDTSGRHKQEAALFEEM-R--QVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV-SVGAVIVTK 249 (494)
Q Consensus 176 l~~~--~~~~~dvIIIDTaG~~~~~~~l~~el-~--~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~-~i~~vVltK 249 (494)
+..+ ....+|+|+|||||.+.... +.+.+ . ........+.+++|+|+.......+....+.+.+ .-+.+|+||
T Consensus 77 ~~~~~~~~~~~d~I~IEt~G~~~p~~-~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad~ivlnk 155 (158)
T cd03112 77 LERLDAGKIAFDRIVIETTGLADPGP-VAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFADRILLNK 155 (158)
T ss_pred HHHHHhccCCCCEEEEECCCcCCHHH-HHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCCEEEEec
Confidence 2332 23579999999999987653 33332 1 2234456788999999975443332222222222 225889999
Q ss_pred ccC
Q 011076 250 MDG 252 (494)
Q Consensus 250 ~D~ 252 (494)
+|+
T Consensus 156 ~dl 158 (158)
T cd03112 156 TDL 158 (158)
T ss_pred ccC
Confidence 995
No 102
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.13 E-value=4.3e-10 Score=97.63 Aligned_cols=110 Identities=25% Similarity=0.395 Sum_probs=68.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhccC
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~~ 183 (494)
|+|+|++||||||++|+|. +.+.+.++. .+.+++.-. +.... ..+
T Consensus 2 V~iiG~~~~GKSTlin~l~------~~~~~~~~~-----------~~~~T~~~~--~~~~~----------------~~~ 46 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALT------GKKLAKVSN-----------IPGTTRDPV--YGQFE----------------YNN 46 (116)
T ss_dssp EEEEESTTSSHHHHHHHHH------TSTSSEESS-----------STTSSSSEE--EEEEE----------------ETT
T ss_pred EEEECCCCCCHHHHHHHHh------ccccccccc-----------cccceeeee--eeeee----------------ece
Confidence 8999999999999999999 777766766 333333321 11000 024
Q ss_pred CcEEEEeCCCCCchhHHHH--HHHHH-HHHhcCCCEEEEEecCCCccc--HHHHHHHHhccCCeeEEEEeC
Q 011076 184 CDLIIVDTSGRHKQEAALF--EEMRQ-VSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTK 249 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~--~el~~-i~~~~~~d~vllVvDa~~g~~--~~~~~~~f~~~~~i~~vVltK 249 (494)
..++|+||||.......-. ..... .......|.+++|+|+..... ..+..+.++ .-.+..+|+||
T Consensus 47 ~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 47 KKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp EEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred eeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 5679999999975432211 12222 223456799999999876322 223344454 33445999998
No 103
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.12 E-value=9.1e-10 Score=102.07 Aligned_cols=107 Identities=15% Similarity=0.194 Sum_probs=64.2
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH--HHHHHHH-hccCCeeEEEEeCccCCCCcc-c
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAF-KQSVSVGAVIVTKMDGHAKGG-G 258 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~--~~~~~~f-~~~~~i~~vVltK~D~~~~~g-~ 258 (494)
++.+.|+||||....... .. .....+|.+++|+|++.+... ....... ....++ .+|+||+|...... .
T Consensus 66 ~~~~~l~Dt~G~~~~~~~----~~--~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~i-iiv~NK~Dl~~~~~~~ 138 (179)
T cd01890 66 EYLLNLIDTPGHVDFSYE----VS--RSLAACEGALLLVDATQGVEAQTLANFYLALENNLEI-IPVINKIDLPSADPER 138 (179)
T ss_pred cEEEEEEECCCChhhHHH----HH--HHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCE-EEEEECCCCCcCCHHH
Confidence 567889999998643221 11 123368999999999865322 2222222 223454 89999999853211 1
Q ss_pred hhH-HHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 259 ALS-AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 259 ~ls-~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
... +....+ + ++.+...+|+..|.| ++.|++.+.+.++
T Consensus 139 ~~~~~~~~~~--------------~-~~~~~~~~Sa~~g~g-i~~l~~~l~~~~~ 177 (179)
T cd01890 139 VKQQIEDVLG--------------L-DPSEAILVSAKTGLG-VEDLLEAIVERIP 177 (179)
T ss_pred HHHHHHHHhC--------------C-CcccEEEeeccCCCC-HHHHHHHHHhhCC
Confidence 111 111111 1 112346789999999 9999999987764
No 104
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=99.11 E-value=9.3e-10 Score=109.73 Aligned_cols=39 Identities=23% Similarity=0.298 Sum_probs=36.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r 141 (494)
+|++.|..||||||++.+||.+|+++|+||++||+|++-
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~ 40 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKH 40 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCccc
Confidence 477889999999999999999999999999999999865
No 105
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=99.11 E-value=1.2e-09 Score=105.90 Aligned_cols=137 Identities=25% Similarity=0.329 Sum_probs=86.1
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchh-HHHHH--hhhhccCcceeccCCCCChHHHHHHHHHH
Q 011076 103 VIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-FDQLK--QNATKAKIPFYGSYTESDPVRIAVEGVET 178 (494)
Q Consensus 103 vI~lv-G~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a-~~qLk--~~~~~~~i~~~~~~~~~dp~~i~~~~l~~ 178 (494)
+|.|+ ...|+||||++..||..|+.+|.+|++|++||.||-+ |.+.. ..+-...++++.. +-......+++.
T Consensus 3 vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~----~e~~~l~~~~e~ 78 (231)
T PF07015_consen 3 VITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEA----DELTILEDAYEA 78 (231)
T ss_pred eEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEec----cchhhHHHHHHH
Confidence 56666 5569999999999999999999999999999999965 32211 1111123333331 223355666777
Q ss_pred HhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc--cHHHHHH---HH----hccCCeeEEEEeC
Q 011076 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQ---AF----KQSVSVGAVIVTK 249 (494)
Q Consensus 179 ~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~--~~~~~~~---~f----~~~~~i~~vVltK 249 (494)
+...+||||||||+|....-.. ..+..+|.+++.+-.+.-. .+.+.+. .. ...+| ..|++|+
T Consensus 79 a~~~~~d~VlvDleG~as~~~~--------~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip-~~Vl~Tr 149 (231)
T PF07015_consen 79 AEASGFDFVLVDLEGGASELND--------YAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIP-AAVLFTR 149 (231)
T ss_pred HHhcCCCEEEEeCCCCCchhHH--------HHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCC-eeEEEec
Confidence 7767899999999998653211 1223578777666554211 1122221 11 22234 4899999
Q ss_pred ccC
Q 011076 250 MDG 252 (494)
Q Consensus 250 ~D~ 252 (494)
++-
T Consensus 150 ~~~ 152 (231)
T PF07015_consen 150 VPA 152 (231)
T ss_pred CCc
Confidence 974
No 106
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.10 E-value=2.9e-10 Score=122.22 Aligned_cols=157 Identities=16% Similarity=0.164 Sum_probs=90.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
.-|+|||.|||||||++++|+ +.++.+ +. .+++|+.-. .+... .
T Consensus 160 adV~LVG~PNAGKSTLln~Ls------~akpkI-ad-----------ypfTTl~P~--lGvv~----------------~ 203 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALS------AAKPKI-AD-----------YPFTTLVPN--LGVVQ----------------A 203 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHh------cCCccc-cc-----------cCcccccce--EEEEE----------------E
Confidence 358999999999999999999 655543 33 223333211 11111 1
Q ss_pred cCCcEEEEeCCCCCchhH---HHHHHHHHHHHhcCCCEEEEEecCCC---cccH---HH----HHHHHhc---------c
Q 011076 182 ENCDLIIVDTSGRHKQEA---ALFEEMRQVSEATNPDLVIFVMDSSI---GQAA---FD----QAQAFKQ---------S 239 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~---~l~~el~~i~~~~~~d~vllVvDa~~---g~~~---~~----~~~~f~~---------~ 239 (494)
.+..++|+||||.....+ .+..+. +..+..++.+++|+|++. +.+. .+ .+..+.. .
T Consensus 204 ~~~~f~laDtPGliegas~g~gLg~~f--LrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~ 281 (500)
T PRK12296 204 GDTRFTVADVPGLIPGASEGKGLGLDF--LRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGD 281 (500)
T ss_pred CCeEEEEEECCCCccccchhhHHHHHH--HHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhh
Confidence 246789999999864221 222211 222345899999999974 1221 11 2222221 1
Q ss_pred --CCeeEEEEeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 240 --VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 240 --~~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
-.+..+|+||+|...... ...... +.+.+. -.+.+++|+..|.| +..|++.+.+.+.
T Consensus 282 l~~kP~IVVlNKiDL~da~e-l~e~l~------------~~l~~~--g~~Vf~ISA~tgeG-LdEL~~~L~ell~ 340 (500)
T PRK12296 282 LAERPRLVVLNKIDVPDARE-LAEFVR------------PELEAR--GWPVFEVSAASREG-LRELSFALAELVE 340 (500)
T ss_pred hcCCCEEEEEECccchhhHH-HHHHHH------------HHHHHc--CCeEEEEECCCCCC-HHHHHHHHHHHHH
Confidence 123589999999853211 111111 111111 13567789999999 9999988887763
No 107
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.10 E-value=1.9e-09 Score=107.85 Aligned_cols=142 Identities=15% Similarity=0.153 Sum_probs=87.2
Q ss_pred CCeEEEEEc-CCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHH------------hh---------hhccCc
Q 011076 100 KPSVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK------------QN---------ATKAKI 157 (494)
Q Consensus 100 ~~~vI~lvG-~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk------------~~---------~~~~~i 157 (494)
.+++|+|++ .+|+||||++.+||..+++.|++|++|++|+.+|.....+. .. ....++
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~~~~~~~~~~~~gl~~~l~~~~~~~~i~~~~~~~~l 181 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKLSEQRGLSDILAGRSDLEVITHIPALENL 181 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCccHHHhcCCCCCCCHHHHhCCCCCHHHeeecCCCCCE
Confidence 467788874 56999999999999999999999999999998765322111 00 001233
Q ss_pred ceeccCC-CCChHHH-----HHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCc-c-cH
Q 011076 158 PFYGSYT-ESDPVRI-----AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-Q-AA 229 (494)
Q Consensus 158 ~~~~~~~-~~dp~~i-----~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g-~-~~ 229 (494)
.+.+... ..++..+ ....+..++ +.|||||||||+.....+.. .-+...|.+++|+.+... . +.
T Consensus 182 ~~lp~g~~~~~~~~~~~~~~~~~~l~~l~-~~yD~ViiD~pp~~~~~d~~-------~~~~~~d~vilV~~~~~t~~~~~ 253 (274)
T TIGR03029 182 SVLPAGAIPPNPQELLARPAFTDLLNKVM-GDYDVVIVDTPSAEHSSDAQ-------IVATRARGTLIVSRVNETRLHEL 253 (274)
T ss_pred EEEeCcCCCCCHHHHhCcHHHHHHHHHHH-hcCCEEEEeCCCcccccHHH-------HHHHhCCeEEEEEECCCCCHHHH
Confidence 3333221 1233222 234445543 57999999999875432211 112246889999987532 2 22
Q ss_pred HHHHHHHhc-cCCeeEEEEeC
Q 011076 230 FDQAQAFKQ-SVSVGAVIVTK 249 (494)
Q Consensus 230 ~~~~~~f~~-~~~i~~vVltK 249 (494)
....+.+.. ..++.|+|+|+
T Consensus 254 ~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 254 TSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred HHHHHHHHhCCCCEEEEEeCC
Confidence 333444443 35678999996
No 108
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.09 E-value=6.6e-10 Score=100.82 Aligned_cols=156 Identities=21% Similarity=0.191 Sum_probs=83.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
+|+++|.+||||||++++|. +.+......+ + ....+. ...+.. ... ..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~------~~~~~~~~~~-~--------~~~~t~-~~~~~~-~~~---------------~~ 49 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALT------GIETDRLPEE-K--------KRGITI-DLGFAY-LDL---------------PS 49 (164)
T ss_pred EEEEEecCCCCHHHHHHHHh------Ccccccchhh-h--------ccCceE-EeeeEE-EEe---------------cC
Confidence 68999999999999999998 5432211110 0 001111 111110 000 01
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc--cHHHHHHHHhc-cCCeeEEEEeCccCCCCccc-
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGGG- 258 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~--~~~~~~~~f~~-~~~i~~vVltK~D~~~~~g~- 258 (494)
++.+.++||||.... ...+ ......+|.+++|+|++.+. ...+....+.. ..++..+|+||+|.......
T Consensus 50 ~~~~~~~DtpG~~~~----~~~~--~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~ 123 (164)
T cd04171 50 GKRLGFIDVPGHEKF----IKNM--LAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLE 123 (164)
T ss_pred CcEEEEEECCChHHH----HHHH--HhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHH
Confidence 457899999997432 1111 12244689999999997642 12222222211 23234899999998643210
Q ss_pred -hhHHHHhcCCCeEEeccccccccc-cccCccchhhcccCCCCchHHHHHHHH
Q 011076 259 -ALSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (494)
Q Consensus 259 -~ls~~~~~g~Pi~fi~~Ge~i~~l-~~f~p~~~vs~~~G~Gdi~~L~e~i~~ 309 (494)
...... +.+... ....+..++|+..|.| ++.+++.+.+
T Consensus 124 ~~~~~~~------------~~~~~~~~~~~~~~~~Sa~~~~~-v~~l~~~l~~ 163 (164)
T cd04171 124 LVEEEIR------------ELLAGTFLADAPIFPVSAVTGEG-IEELKEYLDE 163 (164)
T ss_pred HHHHHHH------------HHHHhcCcCCCcEEEEeCCCCcC-HHHHHHHHhh
Confidence 111111 011110 0123556789999999 9998888754
No 109
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=99.09 E-value=6.8e-10 Score=111.56 Aligned_cols=41 Identities=29% Similarity=0.271 Sum_probs=38.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~ 142 (494)
++|+|+|..||||||++.+||..|+++|+||++||+|++..
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n 42 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKAD 42 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCccc
Confidence 46899999999999999999999999999999999999743
No 110
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.09 E-value=9.8e-10 Score=102.79 Aligned_cols=115 Identities=21% Similarity=0.252 Sum_probs=65.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCc-eEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWK-PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~k-VaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
...|+++|.+||||||++++|. +.+ +..++. ...+++ .+.++..
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~------~~~~~~~~~~-----------~~~~t~-~~~~~~~----------------- 62 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALT------NRKKLARTSK-----------TPGRTQ-LINFFEV----------------- 62 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHh------CCCCcccccC-----------CCCcce-EEEEEEe-----------------
Confidence 4568999999999999999998 543 333332 111111 1111210
Q ss_pred hccCCcEEEEeCCCCCchh------HHHHHHHHHHHH-hcCCCEEEEEecCCCcccHHH--HHHHHhcc-CCeeEEEEeC
Q 011076 180 KKENCDLIIVDTSGRHKQE------AALFEEMRQVSE-ATNPDLVIFVMDSSIGQAAFD--QAQAFKQS-VSVGAVIVTK 249 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~------~~l~~el~~i~~-~~~~d~vllVvDa~~g~~~~~--~~~~f~~~-~~i~~vVltK 249 (494)
+.+++++||||..... ..+...+..... ....+.+++|+|++.+....+ ....+... .++ .+|+||
T Consensus 63 ---~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pv-iiv~nK 138 (179)
T TIGR03598 63 ---NDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPV-LIVLTK 138 (179)
T ss_pred ---CCcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCE-EEEEEC
Confidence 1257999999974321 111111222222 223578999999986543322 23333332 344 899999
Q ss_pred ccCCC
Q 011076 250 MDGHA 254 (494)
Q Consensus 250 ~D~~~ 254 (494)
+|...
T Consensus 139 ~D~~~ 143 (179)
T TIGR03598 139 ADKLK 143 (179)
T ss_pred cccCC
Confidence 99864
No 111
>PRK04213 GTP-binding protein; Provisional
Probab=99.09 E-value=1.5e-09 Score=102.99 Aligned_cols=160 Identities=18% Similarity=0.171 Sum_probs=86.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|++||||||++++|. |.+.. ++. .| .+++....+
T Consensus 10 ~~i~i~G~~~~GKSsLin~l~------~~~~~-~~~---~~--------~~t~~~~~~---------------------- 49 (201)
T PRK04213 10 PEIVFVGRSNVGKSTLVRELT------GKKVR-VGK---RP--------GVTRKPNHY---------------------- 49 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHh------CCCCc-cCC---CC--------ceeeCceEE----------------------
Confidence 469999999999999999998 54321 111 11 111111110
Q ss_pred cCCcEEEEeCCCCCch---h---HHHHHH-HHHHH--HhcCCCEEEEEecCCCcccH-------------HHHHHHHh-c
Q 011076 182 ENCDLIIVDTSGRHKQ---E---AALFEE-MRQVS--EATNPDLVIFVMDSSIGQAA-------------FDQAQAFK-Q 238 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~---~---~~l~~e-l~~i~--~~~~~d~vllVvDa~~g~~~-------------~~~~~~f~-~ 238 (494)
...++.++||||.... + .+.... +.... .+...+.+++|+|+...... ......+. .
T Consensus 50 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 129 (201)
T PRK04213 50 DWGDFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL 129 (201)
T ss_pred eecceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc
Confidence 0116799999995211 1 111111 11121 12346789999998642111 11122222 2
Q ss_pred cCCeeEEEEeCccCCCCcc-chhHHHHhcCCCeEEeccccccccccc-cCccchhhcccCCCCchHHHHHHHHhCCCC
Q 011076 239 SVSVGAVIVTKMDGHAKGG-GALSAVAATKSPVIFIGTGEHMDEFEV-FDVKPFVSRLLGMGDWSGFMDKIHEVVPMD 314 (494)
Q Consensus 239 ~~~i~~vVltK~D~~~~~g-~~ls~~~~~g~Pi~fi~~Ge~i~~l~~-f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~~ 314 (494)
.+|+ .+|+||+|...... .+..+....+.. + .... ..+...+|++.| | ++.+++.+.+.+++.
T Consensus 130 ~~p~-iiv~NK~Dl~~~~~~~~~~~~~~~~~~-------~---~~~~~~~~~~~~SA~~g-g-i~~l~~~l~~~~~~~ 194 (201)
T PRK04213 130 GIPP-IVAVNKMDKIKNRDEVLDEIAERLGLY-------P---PWRQWQDIIAPISAKKG-G-IEELKEAIRKRLHEA 194 (201)
T ss_pred CCCe-EEEEECccccCcHHHHHHHHHHHhcCC-------c---cccccCCcEEEEecccC-C-HHHHHHHHHHhhcCc
Confidence 3455 99999999854321 111222212210 0 0001 124567999999 9 999999999887543
No 112
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.09 E-value=6.8e-10 Score=100.22 Aligned_cols=112 Identities=20% Similarity=0.205 Sum_probs=62.8
Q ss_pred CCcEEEEeCCCCCchhH-HHHHHHH-HHHHhcCCCEEEEEecCCCcccHHHHHHHHhc-cCCeeEEEEeCccCCCCccch
Q 011076 183 NCDLIIVDTSGRHKQEA-ALFEEMR-QVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGGGA 259 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~-~l~~el~-~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~-~~~i~~vVltK~D~~~~~g~~ 259 (494)
+.++.++||||...... ....++. .......+|.+++|+|+............... ..++ .+|+||+|........
T Consensus 42 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~-iiv~NK~Dl~~~~~~~ 120 (158)
T cd01879 42 GKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNLYLTLQLLELGLPV-VVALNMIDEAEKRGIK 120 (158)
T ss_pred CeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHHHHHHHHHHcCCCE-EEEEehhhhcccccch
Confidence 45789999999753221 0111221 11111378999999999864333333222222 2344 8999999985432110
Q ss_pred hHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 260 LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 260 ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
... +.+.... -.+...+|+..|.| +..+++.+.+..
T Consensus 121 ~~~--------------~~~~~~~-~~~~~~iSa~~~~~-~~~l~~~l~~~~ 156 (158)
T cd01879 121 IDL--------------DKLSELL-GVPVVPTSARKGEG-IDELKDAIAELA 156 (158)
T ss_pred hhH--------------HHHHHhh-CCCeEEEEccCCCC-HHHHHHHHHHHh
Confidence 000 0110000 12456789999999 999998887764
No 113
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=99.09 E-value=7.7e-10 Score=110.80 Aligned_cols=43 Identities=28% Similarity=0.231 Sum_probs=38.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchh
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA 144 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a 144 (494)
++|+|+|..||||||++.+||..|+++|+||++|++|++.+.+
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~~ 44 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADST 44 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEecccccccc
Confidence 4688889999999999999999999999999999999976543
No 114
>PRK11519 tyrosine kinase; Provisional
Probab=99.08 E-value=3.8e-09 Score=119.56 Aligned_cols=146 Identities=18% Similarity=0.232 Sum_probs=95.0
Q ss_pred CCeEEEEEc-CCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHH---------------------hhhhccCc
Q 011076 100 KPSVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK---------------------QNATKAKI 157 (494)
Q Consensus 100 ~~~vI~lvG-~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk---------------------~~~~~~~i 157 (494)
++++|++++ .+|+||||++.+||..|+..|+||++|++|+.+|.....+. ......++
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~l 604 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANF 604 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCCE
Confidence 467899998 57999999999999999999999999999998875432221 01111334
Q ss_pred ceeccC-CCCChHHH-----HHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCC-cccHH
Q 011076 158 PFYGSY-TESDPVRI-----AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSI-GQAAF 230 (494)
Q Consensus 158 ~~~~~~-~~~dp~~i-----~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~-g~~~~ 230 (494)
.+.+.. ...+|.++ ..+.++.++ ..||+||||||+.....+.. .-+..+|.+++|+.... ....+
T Consensus 605 ~~lp~g~~~~~~~ell~s~~~~~ll~~l~-~~yD~ViiDtpP~~~v~Da~-------~l~~~~d~~l~Vvr~~~t~~~~~ 676 (719)
T PRK11519 605 DLIPRGQVPPNPSELLMSERFAELVNWAS-KNYDLVLIDTPPILAVTDAA-------IVGRHVGTTLMVARYAVNTLKEV 676 (719)
T ss_pred EEEeCCCCCCCHHHHhhHHHHHHHHHHHH-hcCCEEEEeCCCcccchHHH-------HHHHHCCeEEEEEeCCCCCHHHH
Confidence 443322 23345443 233344443 57999999999987654332 11224688999988653 33333
Q ss_pred H-HHHHHhc-cCCeeEEEEeCccCC
Q 011076 231 D-QAQAFKQ-SVSVGAVIVTKMDGH 253 (494)
Q Consensus 231 ~-~~~~f~~-~~~i~~vVltK~D~~ 253 (494)
. ....+.. ..++.|+|+|+++..
T Consensus 677 ~~~~~~l~~~~~~~~G~VlN~v~~~ 701 (719)
T PRK11519 677 ETSLSRFEQNGIPVKGVILNSIFRR 701 (719)
T ss_pred HHHHHHHHhCCCCeEEEEEeCCccC
Confidence 3 2333433 367789999999754
No 115
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=99.08 E-value=2.6e-09 Score=106.12 Aligned_cols=39 Identities=36% Similarity=0.382 Sum_probs=36.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r 141 (494)
++++.|.+|+||||++.++|.++++.|++|++|++|+.+
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~ 40 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH 40 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc
Confidence 688999999999999999999999999999999999953
No 116
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.08 E-value=6.1e-10 Score=99.51 Aligned_cols=138 Identities=20% Similarity=0.259 Sum_probs=78.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|.+||||||++++|. +.+.. +.+ ..++.
T Consensus 2 kv~liG~~~vGKSsL~~~l~------~~~~~------~~~-----------t~~~~------------------------ 34 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQ------GEEIL------YKK-----------TQAVE------------------------ 34 (142)
T ss_pred eEEEECCCCCCHHHHHHHHc------CCccc------ccc-----------ceeEE------------------------
Confidence 48999999999999999998 44321 100 01111
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH--HHHHHhccCCeeEEEEeCccCCCCccchh
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD--QAQAFKQSVSVGAVIVTKMDGHAKGGGAL 260 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~--~~~~f~~~~~i~~vVltK~D~~~~~g~~l 260 (494)
+...++||||...........+.. ....+|.+++|+|++....... ....+. .| ..+|+||+|...+.. ..
T Consensus 35 -~~~~~iDt~G~~~~~~~~~~~~~~--~~~~ad~vilv~d~~~~~s~~~~~~~~~~~--~p-~ilv~NK~Dl~~~~~-~~ 107 (142)
T TIGR02528 35 -YNDGAIDTPGEYVENRRLYSALIV--TAADADVIALVQSATDPESRFPPGFASIFV--KP-VIGLVTKIDLAEADV-DI 107 (142)
T ss_pred -EcCeeecCchhhhhhHHHHHHHHH--HhhcCCEEEEEecCCCCCcCCChhHHHhcc--CC-eEEEEEeeccCCccc-CH
Confidence 112688999974222222232221 2457899999999976543221 122111 23 488899999864321 11
Q ss_pred HHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHH
Q 011076 261 SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIH 308 (494)
Q Consensus 261 s~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~ 308 (494)
.... +.... ..+.+...+|+..|.| ++.+++.+.
T Consensus 108 ~~~~------------~~~~~-~~~~~~~~~Sa~~~~g-i~~l~~~l~ 141 (142)
T TIGR02528 108 ERAK------------ELLET-AGAEPIFEISSVDEQG-LEALVDYLN 141 (142)
T ss_pred HHHH------------HHHHH-cCCCcEEEEecCCCCC-HHHHHHHHh
Confidence 1111 00111 1122445689999999 888887763
No 117
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=99.07 E-value=1.9e-09 Score=110.74 Aligned_cols=45 Identities=24% Similarity=0.349 Sum_probs=41.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcch
Q 011076 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (494)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~ 143 (494)
.+.++|+++|.+|+||||++.+||.+|+++|++|++|++|++++.
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~ 73 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDT 73 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccc
Confidence 456889999999999999999999999999999999999998754
No 118
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.07 E-value=4.3e-09 Score=103.61 Aligned_cols=141 Identities=16% Similarity=0.142 Sum_probs=81.9
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH--HHHHHHh-ccCCeeEEEEeCccCCC-Ccc
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAFK-QSVSVGAVIVTKMDGHA-KGG 257 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~--~~~~~f~-~~~~i~~vVltK~D~~~-~~g 257 (494)
.++.+.|+||||........ . .....+|.+++|+|++.+.... ....... ...|+ .+++||+|... ...
T Consensus 62 ~~~~i~liDTPG~~~f~~~~----~--~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~-iivvNK~D~~~a~~~ 134 (237)
T cd04168 62 EDTKVNLIDTPGHMDFIAEV----E--RSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPT-IIFVNKIDRAGADLE 134 (237)
T ss_pred CCEEEEEEeCCCccchHHHH----H--HHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEECccccCCCHH
Confidence 46789999999997533222 1 1223569999999998774422 1222222 23454 89999999863 223
Q ss_pred chhH-HHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCCCCCchHHHhhhhcc-hhhHHHHHH
Q 011076 258 GALS-AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEG-NFTLRIMYE 335 (494)
Q Consensus 258 ~~ls-~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~~~~~~~~~~~~~~-~f~~~d~~~ 335 (494)
..+. +....+.++..+.....+..+. ..... .+.|+|.+.+. -.+++++.+.+ +++-++++.
T Consensus 135 ~~~~~i~~~~~~~~~~~~~p~~~~~~~---------~~~~~--~~~l~e~vae~-----dd~l~e~yl~~~~~~~~el~~ 198 (237)
T cd04168 135 KVYQEIKEKLSSDIVPMQKVGLAPNIC---------ETNEI--DDEFWETLAEG-----DDELLEKYLEGGPIEELELDN 198 (237)
T ss_pred HHHHHHHHHHCCCeEEEECCcEeeeee---------eeeec--cHHHHHHHhcC-----CHHHHHHHhCCCCCCHHHHHH
Confidence 3333 3344555444443211111100 00011 25666666553 24577888877 899999999
Q ss_pred HHHHHhccCC
Q 011076 336 QFQNILKMGP 345 (494)
Q Consensus 336 ql~~~~~~g~ 345 (494)
.|+....-|.
T Consensus 199 ~l~~~~~~~~ 208 (237)
T cd04168 199 ELSARIAKRK 208 (237)
T ss_pred HHHHHHHhCC
Confidence 9998766664
No 119
>COG2262 HflX GTPases [General function prediction only]
Probab=99.07 E-value=9.1e-10 Score=113.68 Aligned_cols=155 Identities=18% Similarity=0.279 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|-+|+||||+.|.|. +..+..-+- .| ..|-+-+.+..++
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT------~~~~~~~d~-LF-----ATLdpttR~~~l~----------------------- 237 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALT------GADVYVADQ-LF-----ATLDPTTRRIELG----------------------- 237 (411)
T ss_pred CeEEEEeeccccHHHHHHHHh------ccCeecccc-cc-----ccccCceeEEEeC-----------------------
Confidence 479999999999999999999 544432111 11 0111111111111
Q ss_pred cCCcEEEEeCCCCC-chhHHHHHHHH-HHHHhcCCCEEEEEecCCCcccHHHH-------HHHHhccCCeeEEEEeCccC
Q 011076 182 ENCDLIIVDTSGRH-KQEAALFEEMR-QVSEATNPDLVIFVMDSSIGQAAFDQ-------AQAFKQSVSVGAVIVTKMDG 252 (494)
Q Consensus 182 ~~~dvIIIDTaG~~-~~~~~l~~el~-~i~~~~~~d~vllVvDa~~g~~~~~~-------~~~f~~~~~i~~vVltK~D~ 252 (494)
.+..+++-||.|+. +....+.+..+ .+.++..+|.++.|+|++.. ..... ...+.-.-.+..+|+||+|.
T Consensus 238 ~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp-~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~ 316 (411)
T COG2262 238 DGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDP-EILEKLEAVEDVLAEIGADEIPIILVLNKIDL 316 (411)
T ss_pred CCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCCh-hHHHHHHHHHHHHHHcCCCCCCEEEEEecccc
Confidence 25789999999984 34566766665 55667789999999999865 22222 22221112345999999997
Q ss_pred CCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 253 ~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
..... .+ +.+....+ +..++|+..|.| ++.|.+.|.+.++
T Consensus 317 ~~~~~-~~----------------~~~~~~~~--~~v~iSA~~~~g-l~~L~~~i~~~l~ 356 (411)
T COG2262 317 LEDEE-IL----------------AELERGSP--NPVFISAKTGEG-LDLLRERIIELLS 356 (411)
T ss_pred cCchh-hh----------------hhhhhcCC--CeEEEEeccCcC-HHHHHHHHHHHhh
Confidence 65521 11 11111122 357899999999 9999999998875
No 120
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.07 E-value=1.6e-09 Score=99.28 Aligned_cols=153 Identities=21% Similarity=0.269 Sum_probs=83.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|.+||||||++++|. +.+.. ++.. +..+. .+. ..... ..
T Consensus 2 ~i~~~G~~~~GKssli~~l~------~~~~~-~~~~-----------~~~t~-~~~-~~~~~----------------~~ 45 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLT------RAKPE-VAPY-----------PFTTK-SLF-VGHFD----------------YK 45 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHh------cCCCc-cCCC-----------CCccc-cee-EEEEc----------------cC
Confidence 58999999999999999998 54321 1110 01110 010 00000 12
Q ss_pred CCcEEEEeCCCCCchh---H-HH-HHHHHHHHHhcCCCEEEEEecCCCccc-----HHHHHHHHhc---cCCeeEEEEeC
Q 011076 183 NCDLIIVDTSGRHKQE---A-AL-FEEMRQVSEATNPDLVIFVMDSSIGQA-----AFDQAQAFKQ---SVSVGAVIVTK 249 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~---~-~l-~~el~~i~~~~~~d~vllVvDa~~g~~-----~~~~~~~f~~---~~~i~~vVltK 249 (494)
+..+.|+||||..... . .+ ...+..+ ...+|.+++|+|++.... .......+.. ..++ .+|+||
T Consensus 46 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~--~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pv-ilv~NK 122 (168)
T cd01897 46 YLRWQVIDTPGLLDRPLEERNTIEMQAITAL--AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPV-IVVLNK 122 (168)
T ss_pred ceEEEEEECCCcCCccccCCchHHHHHHHHH--HhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCe-EEEEEc
Confidence 4688999999974211 0 01 0111111 123578999999975321 1112222222 2444 899999
Q ss_pred ccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 250 MDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 250 ~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
+|...... .... +..... ...+...+|++.|.| ++.+++.+.+.+
T Consensus 123 ~Dl~~~~~--~~~~-------------~~~~~~-~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 167 (168)
T cd01897 123 IDLLTFED--LSEI-------------EEEEEL-EGEEVLKISTLTEEG-VDEVKNKACELL 167 (168)
T ss_pred cccCchhh--HHHH-------------HHhhhh-ccCceEEEEecccCC-HHHHHHHHHHHh
Confidence 99854321 1111 111111 123456789999999 999999887654
No 121
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.07 E-value=2.1e-09 Score=102.72 Aligned_cols=124 Identities=20% Similarity=0.183 Sum_probs=70.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEE--cccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC--ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs--~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
.|+++|..|+|||||++.|.....+.|....... .|... +.-+ .++.+.... ..+.
T Consensus 4 ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~----~E~~-----rg~Ti~~~~-------------~~~~ 61 (195)
T cd01884 4 NVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAP----EEKA-----RGITINTAH-------------VEYE 61 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCCh----hhhh-----cCccEEeee-------------eEec
Confidence 5899999999999999999977655443221111 11110 0001 122111100 0111
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH--HHHHHHHhc-cCCeeEEEEeCccCCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~--~~~~~~f~~-~~~i~~vVltK~D~~~ 254 (494)
.++..+++|||||... +..++ ......+|.+++|+|+..|... ...+..... ..+..++++||+|...
T Consensus 62 ~~~~~i~~iDtPG~~~----~~~~~--~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~ 132 (195)
T cd01884 62 TANRHYAHVDCPGHAD----YIKNM--ITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVD 132 (195)
T ss_pred CCCeEEEEEECcCHHH----HHHHH--HHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCC
Confidence 2367889999999853 33333 2334468999999999876432 222333222 2343368899999853
No 122
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.06 E-value=4.9e-09 Score=118.78 Aligned_cols=148 Identities=18% Similarity=0.172 Sum_probs=95.5
Q ss_pred CCCeEEEEEcC-CCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhh---------------------hhccC
Q 011076 99 GKPSVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQN---------------------ATKAK 156 (494)
Q Consensus 99 ~~~~vI~lvG~-~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~---------------------~~~~~ 156 (494)
..+++|+|++. +|+||||++.+||..++..|+||++|++|+++|.....+... ....+
T Consensus 529 ~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~ 608 (726)
T PRK09841 529 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGG 608 (726)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHHHcCCCCCCCHHHHhCCCCCHHHheeccCCCC
Confidence 34678999986 499999999999999999999999999999887653322110 00123
Q ss_pred cceeccCC-CCChHHH-----HHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc--c
Q 011076 157 IPFYGSYT-ESDPVRI-----AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--A 228 (494)
Q Consensus 157 i~~~~~~~-~~dp~~i-----~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~--~ 228 (494)
+.+..... ..+|.++ ..+.+..++ ..||+||||||+.....+.. ..+..+|.+++|+...... .
T Consensus 609 l~vl~~g~~~~~p~ell~~~~~~~ll~~l~-~~yD~IIIDtPP~~~~~Da~-------~la~~ad~~llVvr~~~t~~~~ 680 (726)
T PRK09841 609 FDVITRGQVPPNPSELLMRDRMRQLLEWAN-DHYDLVIVDTPPMLAVSDAA-------VVGRSVGTSLLVARFGLNTAKE 680 (726)
T ss_pred EEEEeCCCCCCCHHHHhCcHHHHHHHHHHH-hcCCEEEEeCCCccccchHH-------HHHHhCCeEEEEEeCCCCCHHH
Confidence 44333221 2344433 333444444 57999999999987654322 1122468889998765322 2
Q ss_pred HHHHHHHHhc-cCCeeEEEEeCccCCC
Q 011076 229 AFDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 229 ~~~~~~~f~~-~~~i~~vVltK~D~~~ 254 (494)
..+..+.+.. ..++.|+|+|++|...
T Consensus 681 ~~~~~~~l~~~~~~~~G~VlN~~~~~~ 707 (726)
T PRK09841 681 VSLSMQRLEQAGVNIKGAILNGVIKRA 707 (726)
T ss_pred HHHHHHHHHhCCCceEEEEEeCcccCc
Confidence 2333444433 3567799999998644
No 123
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=99.06 E-value=8.8e-10 Score=103.64 Aligned_cols=148 Identities=19% Similarity=0.223 Sum_probs=88.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCC---ChHHHHHHHHHHH
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTES---DPVRIAVEGVETF 179 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~---dp~~i~~~~l~~~ 179 (494)
++++.|..||||||++++|.. ...+|.++++|-+|....+--.++- ...++++.....+. ....-...++..+
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~~iD~~~l---~~~~~~v~~l~~gcicc~~~~~~~~~l~~l 77 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFGEVNIDAELL---QEDGVPVVELNNGCICCTLRDDLVEALRRL 77 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTTSTHHHHHHH---HTTT-EEEEECTTTESS-TTS-HHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEccccccccchhhh---cccceEEEEecCCCcccccHHHHHHHHHHH
Confidence 688999999999999999998 6667999999999887654333222 22233333222110 0111123344444
Q ss_pred h-cc--CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhccC-CeeEEEEeCccCCCC
Q 011076 180 K-KE--NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV-SVGAVIVTKMDGHAK 255 (494)
Q Consensus 180 ~-~~--~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~-~i~~vVltK~D~~~~ 255 (494)
. .. .+|+|||.|.|..+...- .-.-..+......+.++.|+|+.......+....+.+.+ --+.+|+||+|....
T Consensus 78 ~~~~~~~~d~IiIE~sG~a~p~~l-~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~ADvIvlnK~D~~~~ 156 (178)
T PF02492_consen 78 LREYEERPDRIIIETSGLADPAPL-ILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFADVIVLNKIDLVSD 156 (178)
T ss_dssp CCCCHGC-SEEEEEEECSSGGGGH-HHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-SEEEEE-GGGHHH
T ss_pred HHhcCCCcCEEEECCccccccchh-hhccccccccccccceeEEeccccccccccchhhhhhcchhcCEEEEeccccCCh
Confidence 3 33 589999999998765543 211234555677899999999965322222222222222 226899999998655
No 124
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.06 E-value=7e-09 Score=103.67 Aligned_cols=156 Identities=18% Similarity=0.259 Sum_probs=81.5
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH--HHHHHHhc-cCCeeEEEEeCccCCCCc-c
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAFKQ-SVSVGAVIVTKMDGHAKG-G 257 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~--~~~~~f~~-~~~i~~vVltK~D~~~~~-g 257 (494)
.++++.|+||||...... +.. .....+|.+++|+|++.+.... ........ ..|. .+|+||+|..... .
T Consensus 62 ~~~~i~liDtPG~~~f~~----~~~--~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~-iivvNK~D~~~~~~~ 134 (268)
T cd04170 62 KGHKINLIDTPGYADFVG----ETR--AALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPR-IIFINKMDRERADFD 134 (268)
T ss_pred CCEEEEEEECcCHHHHHH----HHH--HHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEECCccCCCCHH
Confidence 467899999999853222 221 1223579999999998764432 12222222 2444 8899999986432 1
Q ss_pred chhH-HHHhcCCCeEEe----ccccccccccccCccchh--hc-----ccCCC-Cch----HHHHHHHHhCCCCCchHHH
Q 011076 258 GALS-AVAATKSPVIFI----GTGEHMDEFEVFDVKPFV--SR-----LLGMG-DWS----GFMDKIHEVVPMDQQPELL 320 (494)
Q Consensus 258 ~~ls-~~~~~g~Pi~fi----~~Ge~i~~l~~f~p~~~v--s~-----~~G~G-di~----~L~e~i~~~~~~~~~~~~~ 320 (494)
..+. +....+.|+..+ ..|+.+..+-........ .. ..... +.. .+.+.+.+.+- +.-.+++
T Consensus 135 ~~~~~l~~~~~~~~~~~~ip~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~e~~a-~~dd~l~ 213 (268)
T cd04170 135 KTLAALQEAFGRPVVPLQLPIGEGDDFKGVVDLLTEKAYIYSPGAPSEEIEIPEELKEEVAEAREELLEAVA-ETDDELM 213 (268)
T ss_pred HHHHHHHHHhCCCeEEEEecccCCCceeEEEEcccCEEEEccCCCcceeccCCHHHHHHHHHHHHHHHHHHh-hCCHHHH
Confidence 2222 333456554433 345554332111110000 00 00000 011 11222222221 2235688
Q ss_pred hhhhcc-hhhHHHHHHHHHHHhccCC
Q 011076 321 QKLSEG-NFTLRIMYEQFQNILKMGP 345 (494)
Q Consensus 321 ~~~~~~-~f~~~d~~~ql~~~~~~g~ 345 (494)
++++.+ +++-+++...|+....-|.
T Consensus 214 e~yl~~~~~~~~~l~~~l~~~~~~~~ 239 (268)
T cd04170 214 EKYLEGGELTEEELHAGLRRALRAGL 239 (268)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHhCC
Confidence 888886 8999999999988666664
No 125
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.05 E-value=1.7e-09 Score=108.51 Aligned_cols=215 Identities=18% Similarity=0.163 Sum_probs=105.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhccC
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~~ 183 (494)
|+++|.+|+||||++++|....... .++..|+.... ..+. .+.-...++.+... ...+...+
T Consensus 2 v~ivGh~~~GKTtL~~~Ll~~~g~~-~~~g~v~~~~~---~~D~-~~~E~~rgiti~~~-------------~~~~~~~~ 63 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYTGRI-HKIGEVHGGGA---TMDF-MEQERERGITIQSA-------------ATTCFWKD 63 (270)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCC-cccccccCCcc---ccCC-CccccCCCcCeecc-------------EEEEEECC
Confidence 7899999999999999998644321 12222221000 0000 00001111211100 01112246
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH--HHHHHHhc-cCCeeEEEEeCccCCCC-ccch
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAFKQ-SVSVGAVIVTKMDGHAK-GGGA 259 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~--~~~~~f~~-~~~i~~vVltK~D~~~~-~g~~ 259 (494)
+.+.+|||||..... .+.. ......|.+++|+|+..+.... ........ ..|+ .+++||+|.... ....
T Consensus 64 ~~i~liDTPG~~df~----~~~~--~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~-ivviNK~D~~~a~~~~~ 136 (270)
T cd01886 64 HRINIIDTPGHVDFT----IEVE--RSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPR-IAFVNKMDRTGADFFRV 136 (270)
T ss_pred EEEEEEECCCcHHHH----HHHH--HHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCE-EEEEECCCCCCCCHHHH
Confidence 889999999986432 2222 2233568999999998764332 22332222 2455 899999998532 2222
Q ss_pred hH-HHHhcCCC----eEEeccccccc---cccccCccchhhcccCC----CC--------chHHHHHHHHhCCCCCchHH
Q 011076 260 LS-AVAATKSP----VIFIGTGEHMD---EFEVFDVKPFVSRLLGM----GD--------WSGFMDKIHEVVPMDQQPEL 319 (494)
Q Consensus 260 ls-~~~~~g~P----i~fi~~Ge~i~---~l~~f~p~~~vs~~~G~----Gd--------i~~L~e~i~~~~~~~~~~~~ 319 (494)
+. +....+.+ +..++.+..+. |+-.-....+ +.-.|. .+ +..+.+.+.+.+- +.-.++
T Consensus 137 ~~~l~~~l~~~~~~~~~Pisa~~~f~g~vd~~~~~a~~~-~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~va-e~dd~L 214 (270)
T cd01886 137 VEQIREKLGANPVPLQLPIGEEDDFRGVVDLIEMKALYW-DGELGEKIEETEIPEDLLEEAEEAREELIETLA-EFDDEL 214 (270)
T ss_pred HHHHHHHhCCCceEEEeccccCCCceEEEEccccEEEec-ccCCCceeEEecCCHHHHHHHHHHHHHHHHHHh-cCCHHH
Confidence 22 22333332 22333333221 1111000000 000010 01 1222222222221 223668
Q ss_pred Hhhhhcc-hhhHHHHHHHHHHHhccCC
Q 011076 320 LQKLSEG-NFTLRIMYEQFQNILKMGP 345 (494)
Q Consensus 320 ~~~~~~~-~f~~~d~~~ql~~~~~~g~ 345 (494)
++|.+.| +++.+++++.|+.-...|.
T Consensus 215 ~e~yl~~~~~~~~el~~~l~~~~~~~~ 241 (270)
T cd01886 215 MEKYLEGEEITEEEIKAAIRKGTIANK 241 (270)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCc
Confidence 8888887 8999999999998666664
No 126
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.05 E-value=7.8e-10 Score=101.68 Aligned_cols=151 Identities=17% Similarity=0.189 Sum_probs=83.2
Q ss_pred EEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc-CC
Q 011076 106 FVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE-NC 184 (494)
Q Consensus 106 lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~-~~ 184 (494)
|+|++||||||++++|+ +.++ .++. .+.++..-. ++... .. +.
T Consensus 1 iiG~~~~GKStll~~l~------~~~~-~~~~-----------~~~~t~~~~--~~~~~----------------~~~~~ 44 (176)
T cd01881 1 LVGLPNVGKSTLLNALT------NAKP-KVAN-----------YPFTTLEPN--LGVVE----------------VPDGA 44 (176)
T ss_pred CCCCCCCcHHHHHHHHh------cCCc-cccC-----------CCceeecCc--ceEEE----------------cCCCC
Confidence 57999999999999999 6654 2222 111111100 00000 12 56
Q ss_pred cEEEEeCCCCCchh---HHHHHHHHHHHHhcCCCEEEEEecCCCcc-----cHHH-------HHHHHh--------ccCC
Q 011076 185 DLIIVDTSGRHKQE---AALFEEMRQVSEATNPDLVIFVMDSSIGQ-----AAFD-------QAQAFK--------QSVS 241 (494)
Q Consensus 185 dvIIIDTaG~~~~~---~~l~~el~~i~~~~~~d~vllVvDa~~g~-----~~~~-------~~~~f~--------~~~~ 241 (494)
.+.|+||||..... +.+...+ ......+|.+++|+|++... ...+ ...... ...|
T Consensus 45 ~~~i~DtpG~~~~~~~~~~~~~~~--~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 122 (176)
T cd01881 45 RIQVADIPGLIEGASEGRGLGNQF--LAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKP 122 (176)
T ss_pred eEEEEeccccchhhhcCCCccHHH--HHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC
Confidence 78999999974321 1111111 12234589999999997652 2211 111111 1234
Q ss_pred eeEEEEeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 242 VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 242 i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
+ .+|+||+|........ ... ..........+...+|+..|.| ++.+++.+...
T Consensus 123 ~-ivv~NK~Dl~~~~~~~-~~~-------------~~~~~~~~~~~~~~~Sa~~~~g-l~~l~~~l~~~ 175 (176)
T cd01881 123 V-IYVLNKIDLDDAEELE-EEL-------------VRELALEEGAEVVPISAKTEEG-LDELIRAIYEL 175 (176)
T ss_pred e-EEEEEchhcCchhHHH-HHH-------------HHHHhcCCCCCEEEEehhhhcC-HHHHHHHHHhh
Confidence 4 8999999986542211 110 0011112234457789999999 99998887553
No 127
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.05 E-value=1.4e-09 Score=99.42 Aligned_cols=109 Identities=17% Similarity=0.103 Sum_probs=60.5
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHh-----ccCCeeEEEEeCccCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK-----QSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~-----~~~~i~~vVltK~D~~~ 254 (494)
++.+.++||||....... . ......++.+++|+|++....... ....+. ...|+ .+|+||+|...
T Consensus 49 ~~~~~l~Dt~G~~~~~~~----~--~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~D~~~ 121 (167)
T cd04160 49 NARLKFWDLGGQESLRSL----W--DKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPL-LILANKQDLPD 121 (167)
T ss_pred CEEEEEEECCCChhhHHH----H--HHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCE-EEEEEcccccc
Confidence 578899999997543211 1 122346899999999875432211 112111 12454 89999999744
Q ss_pred CccchhHHHHhcCCCeEEeccccccccccc-cCccchhhcccCCCCchHHHHHHHH
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEV-FDVKPFVSRLLGMGDWSGFMDKIHE 309 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~-f~p~~~vs~~~G~Gdi~~L~e~i~~ 309 (494)
... .-........ ....+.. ..+...+|++.|.| ++++++.+.+
T Consensus 122 ~~~-~~~~~~~~~~---------~~~~~~~~~~~~~~~Sa~~g~g-v~e~~~~l~~ 166 (167)
T cd04160 122 ALS-VEEIKEVFQD---------KAEEIGRRDCLVLPVSALEGTG-VREGIEWLVE 166 (167)
T ss_pred CCC-HHHHHHHhcc---------ccccccCCceEEEEeeCCCCcC-HHHHHHHHhc
Confidence 311 1111111110 0001111 12456789999999 9999888753
No 128
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.04 E-value=3e-09 Score=102.37 Aligned_cols=67 Identities=27% Similarity=0.346 Sum_probs=40.5
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH--HHHHHhc-cCCeeEEEEeCccCCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD--QAQAFKQ-SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~--~~~~f~~-~~~i~~vVltK~D~~~ 254 (494)
.+..+.|+||||.... ..++ +.....+|.+++|+|++.+..... ....... ..+..++|+||+|...
T Consensus 75 ~~~~~~liDTpG~~~~----~~~~--~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~ 144 (208)
T cd04166 75 PKRKFIIADTPGHEQY----TRNM--VTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVD 144 (208)
T ss_pred CCceEEEEECCcHHHH----HHHH--HHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhccc
Confidence 4678899999997432 2222 123447899999999987643221 1111111 2233366899999864
No 129
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=99.04 E-value=2.7e-09 Score=108.41 Aligned_cols=163 Identities=16% Similarity=0.186 Sum_probs=90.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhH------------HHHHhhh------hccCcceec--
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF------------DQLKQNA------TKAKIPFYG-- 161 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~------------~qLk~~~------~~~~i~~~~-- 161 (494)
++|+|+|..|+||||++.+||..|+++|+||++|++|+..+.+. +-+.... ....+.+..
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~~~~~l~g~~~~~~l~dv~~~~~~~~~~~~~~~vi~~~~~ 80 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDSTSLLFGGISLPTIIEVATEKKLAGEEVKVGDVCFKTTI 80 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCCccchhccCCCCCCHHHHHHhhccccCCCCHHHheeeccc
Confidence 36888899999999999999999999999999999998553221 1111000 000011100
Q ss_pred --cC---C---CCCh---------H-HHHHHHHHHHh--ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEe
Q 011076 162 --SY---T---ESDP---------V-RIAVEGVETFK--KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVM 221 (494)
Q Consensus 162 --~~---~---~~dp---------~-~i~~~~l~~~~--~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVv 221 (494)
.. . ...| . ......++.+. ..+||||||||+|........ ..+ ....+|.+++|+
T Consensus 81 ~~~~~~~~~~e~~~~~~~~gc~~~~~~~~~~~l~~l~~~~~~yD~IliD~~~~~~~~g~~-~~~----a~~~Ad~viVvt 155 (296)
T TIGR02016 81 MNGSGGVYGMELGGPEVGRGCGGRGIIHGFDLLEKLGFHDWDFDFVLMDFLGDVVCGGFA-TPL----ARSLAEEVIVIG 155 (296)
T ss_pred cCcCCCcceeecCCCCcccccCcchhhHHHHHHHHhhhhcccCCEEEEecCCCccccccc-cch----hhhhCCeEEEEe
Confidence 00 0 0001 0 11234444432 247999999997753110000 000 112468888888
Q ss_pred cCCCcc-----cHHHHHHHHhc---cCCeeEEEEeCccCCCCccchhHHHHhcCCCeEE
Q 011076 222 DSSIGQ-----AAFDQAQAFKQ---SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIF 272 (494)
Q Consensus 222 Da~~g~-----~~~~~~~~f~~---~~~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~f 272 (494)
++.... .....+..+.+ .+++.++|+|+.+... ....++...++|+.-
T Consensus 156 ~~e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~~~---~~~~~~~~~~i~vLg 211 (296)
T TIGR02016 156 SNDRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDGSG---EAQAFAREVGIPVLA 211 (296)
T ss_pred cchHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCCcc---HHHHHHHHcCCCeEE
Confidence 865211 11222333433 2556799999998632 344556666766653
No 130
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.04 E-value=1.2e-09 Score=115.81 Aligned_cols=154 Identities=16% Similarity=0.227 Sum_probs=88.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
-|+|+|.|||||||++++|+ +.++.+ +. .+++|.. |.++.... ..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt------~ak~kI-a~-----------ypfTTl~--PnlG~v~~---------------~~ 204 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVS------NAKPKI-AN-----------YHFTTLV--PNLGVVET---------------DD 204 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHH------cCCCcc-cc-----------CCcceec--eEEEEEEE---------------eC
Confidence 58999999999999999999 666543 22 1222221 11111100 01
Q ss_pred CCcEEEEeCCCCCchhH---HHHHHHHHHHHhcCCCEEEEEecCCCc--ccHHH-------HHHHHhcc--CCeeEEEEe
Q 011076 183 NCDLIIVDTSGRHKQEA---ALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFD-------QAQAFKQS--VSVGAVIVT 248 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~---~l~~el~~i~~~~~~d~vllVvDa~~g--~~~~~-------~~~~f~~~--~~i~~vVlt 248 (494)
+..++|+||||...... .+.... +..+..++.+++|+|++.. .+..+ .+..+... -.+..+|+|
T Consensus 205 ~~~~~laD~PGliega~~~~gLg~~f--Lrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~N 282 (424)
T PRK12297 205 GRSFVMADIPGLIEGASEGVGLGHQF--LRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVAN 282 (424)
T ss_pred CceEEEEECCCCcccccccchHHHHH--HHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEe
Confidence 46789999999854221 222221 1223357999999998642 12221 12222221 123489999
Q ss_pred CccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 249 KMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 249 K~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
|+|.......+..+.. .+. .+..++|++.|.| ++.|++.+.+.+.
T Consensus 283 K~DL~~~~e~l~~l~~----------------~l~--~~i~~iSA~tgeG-I~eL~~~L~~~l~ 327 (424)
T PRK12297 283 KMDLPEAEENLEEFKE----------------KLG--PKVFPISALTGQG-LDELLYAVAELLE 327 (424)
T ss_pred CCCCcCCHHHHHHHHH----------------HhC--CcEEEEeCCCCCC-HHHHHHHHHHHHH
Confidence 9997322111111111 111 3456789999999 9999999987764
No 131
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.03 E-value=5e-09 Score=104.82 Aligned_cols=147 Identities=18% Similarity=0.126 Sum_probs=87.6
Q ss_pred CeEEEEE-cCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhh---------h--------ccCcceecc
Q 011076 101 PSVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNA---------T--------KAKIPFYGS 162 (494)
Q Consensus 101 ~~vI~lv-G~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~---------~--------~~~i~~~~~ 162 (494)
.++|+++ |.+|+||||++.+||..+++.|+||+++|+|.|.|....-+.... . ..++.....
T Consensus 57 ~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~lsi 136 (265)
T COG0489 57 KNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKVLSI 136 (265)
T ss_pred ceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCCCCCcccccCCCccccceecCccceEEE
Confidence 4556554 899999999999999999999999999999999887644332210 0 000110000
Q ss_pred C----CCCChHH-----HHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCc-ccHHH-
Q 011076 163 Y----TESDPVR-----IAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-QAAFD- 231 (494)
Q Consensus 163 ~----~~~dp~~-----i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g-~~~~~- 231 (494)
. ...++.. ...+-+..++...|||||||||+.....+.. ....-+|.+++|...... .....
T Consensus 137 ~~~~~~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~-------i~~~~~~g~viVt~p~~~~~~~v~k 209 (265)
T COG0489 137 LPLGPVPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADAT-------VLQRIPDGVVIVTTPGKTALEDVKK 209 (265)
T ss_pred EecCCCCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHHH-------HHhccCCeEEEEeCCccchHHHHHH
Confidence 0 1112211 1334455566666999999998876432211 111235677777765422 12222
Q ss_pred HHHHHhc-cCCeeEEEEeCccCCC
Q 011076 232 QAQAFKQ-SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 232 ~~~~f~~-~~~i~~vVltK~D~~~ 254 (494)
....+.+ ..++.|+|.|+.+-..
T Consensus 210 a~~~~~~~~~~vlGvv~Nm~~~~~ 233 (265)
T COG0489 210 AIDMLEKAGIPVLGVVENMSYFIC 233 (265)
T ss_pred HHHHHHhcCCceEEEEecCccCcc
Confidence 2233332 3578899999888643
No 132
>PRK10818 cell division inhibitor MinD; Provisional
Probab=99.03 E-value=4.8e-09 Score=104.66 Aligned_cols=145 Identities=12% Similarity=0.123 Sum_probs=85.1
Q ss_pred eEEEEEc-CCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHH--------------HHhh---------h-hccC
Q 011076 102 SVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQ--------------LKQN---------A-TKAK 156 (494)
Q Consensus 102 ~vI~lvG-~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~q--------------Lk~~---------~-~~~~ 156 (494)
++|+|++ ..||||||++.+||.+|+++|++|++|++|++.+..... +... . ...+
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTEN 82 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCCCChhhhhCCCcccccCHHHHhcCCCcHHHhccccCCcCC
Confidence 5787775 569999999999999999999999999999964332110 1000 0 1123
Q ss_pred cceeccCCCCCh----HHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc--cHH
Q 011076 157 IPFYGSYTESDP----VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAF 230 (494)
Q Consensus 157 i~~~~~~~~~dp----~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~--~~~ 230 (494)
+.+.+.....+. .....+.+..++...||||||||||..... . ......+|.+++|++++... ...
T Consensus 83 ~~~lp~~~~~~~~~~~~~~~~~~l~~l~~~~yd~viiD~p~~~~~~--~------~~~l~~ad~vivv~~p~~~sl~~~~ 154 (270)
T PRK10818 83 LYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETG--A------LMALYFADEAIITTNPEVSSVRDSD 154 (270)
T ss_pred EEEecCCCCcchhhhCHHHHHHHHHHHhhcCCCEEEEeCCCCccHH--H------HHHHHhCCeEEEEcCCCchHHHhHH
Confidence 333332211111 111344555555457999999998876432 1 11234579999999987421 111
Q ss_pred HHHHHHh---c-----cCCe-eEEEEeCccCCC
Q 011076 231 DQAQAFK---Q-----SVSV-GAVIVTKMDGHA 254 (494)
Q Consensus 231 ~~~~~f~---~-----~~~i-~~vVltK~D~~~ 254 (494)
.....+. . ..++ .++|+|++|...
T Consensus 155 ~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~~ 187 (270)
T PRK10818 155 RILGILASKSRRAENGEEPIKEHLLLTRYNPGR 187 (270)
T ss_pred HHHHHHHHhhccccccccccceEEEEeccCHhh
Confidence 2222221 1 1122 378999998653
No 133
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.01 E-value=8.5e-10 Score=120.16 Aligned_cols=136 Identities=18% Similarity=0.164 Sum_probs=85.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|.|||||||+.|.|+ |.+.-+-+. .|+.+..... .++.
T Consensus 4 ~~valvGNPNvGKTtlFN~LT------G~~q~VgNw-----------------pGvTVEkkeg-------------~~~~ 47 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALT------GANQKVGNW-----------------PGVTVEKKEG-------------KLKY 47 (653)
T ss_pred ceEEEecCCCccHHHHHHHHh------ccCceecCC-----------------CCeeEEEEEE-------------EEEe
Confidence 359999999999999999999 765544433 2333321100 1223
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHH--HHHHhcCCCEEEEEecCCCcccHHH-HHHHHhccCCeeEEEEeCccCCCCccc
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMR--QVSEATNPDLVIFVMDSSIGQAAFD-QAQAFKQSVSVGAVIVTKMDGHAKGGG 258 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~--~i~~~~~~d~vllVvDa~~g~~~~~-~~~~f~~~~~i~~vVltK~D~~~~~g~ 258 (494)
.+.++-|||.||.+.......+|.. +...--+||.++.|+||+.-...+. ..+.+.-..| ..+++|++|...+.|-
T Consensus 48 ~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLyltlQLlE~g~p-~ilaLNm~D~A~~~Gi 126 (653)
T COG0370 48 KGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNLYLTLQLLELGIP-MILALNMIDEAKKRGI 126 (653)
T ss_pred cCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHHHHHHHHHHcCCC-eEEEeccHhhHHhcCC
Confidence 4778999999998754433333332 2223346899999999985433333 2333333345 4999999999888776
Q ss_pred hhHH---HHhcCCCeEEec
Q 011076 259 ALSA---VAATKSPVIFIG 274 (494)
Q Consensus 259 ~ls~---~~~~g~Pi~fi~ 274 (494)
-+.. .+..|+||..+.
T Consensus 127 ~ID~~~L~~~LGvPVv~tv 145 (653)
T COG0370 127 RIDIEKLSKLLGVPVVPTV 145 (653)
T ss_pred cccHHHHHHHhCCCEEEEE
Confidence 5543 234566666554
No 134
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.01 E-value=5.1e-09 Score=99.23 Aligned_cols=65 Identities=22% Similarity=0.261 Sum_probs=40.4
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH--HHHHHH-hccCCeeEEEEeCccCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAF-KQSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~--~~~~~f-~~~~~i~~vVltK~D~~~ 254 (494)
++.+.|+||||...... ... .....+|.+++|+|++.+.... ...... ....++ .+|+||+|...
T Consensus 64 ~~~~~l~DtpG~~~~~~----~~~--~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~-iiv~NK~Dl~~ 131 (194)
T cd01891 64 DTKINIVDTPGHADFGG----EVE--RVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKP-IVVINKIDRPD 131 (194)
T ss_pred CEEEEEEECCCcHHHHH----HHH--HHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCE-EEEEECCCCCC
Confidence 56789999999754322 111 1234679999999998653221 122222 223454 88999999853
No 135
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=99.01 E-value=7.6e-09 Score=109.56 Aligned_cols=42 Identities=33% Similarity=0.367 Sum_probs=37.2
Q ss_pred CeEEEEEc-CCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc
Q 011076 101 PSVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (494)
Q Consensus 101 ~~vI~lvG-~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~ 142 (494)
.++|+|+. ..||||||++.+||.+|+.+|+||++||+|++..
T Consensus 121 ~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~~ 163 (405)
T PRK13869 121 LQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQAS 163 (405)
T ss_pred ceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCCC
Confidence 46788874 5699999999999999999999999999999754
No 136
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=99.00 E-value=6.3e-09 Score=104.20 Aligned_cols=43 Identities=23% Similarity=0.125 Sum_probs=38.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHh-cCCceEEEEcccCcchh
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADTFRAGA 144 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~-~g~kVaiVs~D~~r~~a 144 (494)
++|+|+|..||||||++.+||..|++ +|+||++|++|++...+
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~t 46 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADST 46 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcChH
Confidence 57888899999999999999999997 59999999999986543
No 137
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.00 E-value=1.8e-09 Score=111.28 Aligned_cols=155 Identities=16% Similarity=0.238 Sum_probs=87.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
-|+|+|.|||||||++++|. +.++. |+.- +++|.. |..+.... ..
T Consensus 159 dV~lvG~pnaGKSTLl~~lt------~~~~~-va~y-----------~fTT~~--p~ig~v~~---------------~~ 203 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVS------AAKPK-IADY-----------PFTTLV--PNLGVVRV---------------DD 203 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHh------cCCcc-ccCC-----------CCCccC--CEEEEEEe---------------CC
Confidence 48999999999999999998 54432 3331 122221 11111110 01
Q ss_pred CCcEEEEeCCCCCchhH---HHHHHHHHHHHhcCCCEEEEEecCCCcc--cHHHH-------HHHHhcc--CCeeEEEEe
Q 011076 183 NCDLIIVDTSGRHKQEA---ALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQ-------AQAFKQS--VSVGAVIVT 248 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~---~l~~el~~i~~~~~~d~vllVvDa~~g~--~~~~~-------~~~f~~~--~~i~~vVlt 248 (494)
...++|+||||...... .+.... +.....++.+++|+|++..+ +..+. +..+... -.+..+|+|
T Consensus 204 ~~~~~i~D~PGli~~a~~~~gLg~~f--lrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~N 281 (329)
T TIGR02729 204 GRSFVIADIPGLIEGASEGAGLGHRF--LKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLN 281 (329)
T ss_pred ceEEEEEeCCCcccCCcccccHHHHH--HHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEe
Confidence 36789999999854221 122211 11233578999999987431 22221 2222211 123489999
Q ss_pred CccCCCCccchhHHHHhcCCCeEEeccccccc-cccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 249 KMDGHAKGGGALSAVAATKSPVIFIGTGEHMD-EFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 249 K~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~-~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
|+|..... ...... +.+. .+. .+..++|++.|.| ++.|++.+.+.+
T Consensus 282 K~DL~~~~-~~~~~~-------------~~l~~~~~--~~vi~iSAktg~G-I~eL~~~I~~~l 328 (329)
T TIGR02729 282 KIDLLDEE-ELAELL-------------KELKKALG--KPVFPISALTGEG-LDELLYALAELL 328 (329)
T ss_pred CccCCChH-HHHHHH-------------HHHHHHcC--CcEEEEEccCCcC-HHHHHHHHHHHh
Confidence 99985431 111111 1111 111 2456789999999 999999987764
No 138
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.00 E-value=4.9e-09 Score=95.20 Aligned_cols=150 Identities=19% Similarity=0.152 Sum_probs=81.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhccC
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~~ 183 (494)
|+++|++||||||+++++. +.+.. .. .| + .+..+..... ...
T Consensus 2 i~i~G~~~~GKTsl~~~~~------~~~~~--~~---~~----------t-~~~~~~~~~~----------------~~~ 43 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLK------HAELV--TT---IP----------T-VGFNVEMLQL----------------EKH 43 (160)
T ss_pred EEEEcCCCCCHHHHHHHHh------cCCcc--cc---cC----------c-cCcceEEEEe----------------CCc
Confidence 7899999999999999998 44331 10 01 0 0111110000 024
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHH-Hh----ccCCeeEEEEeCccCCCC
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQA-FK----QSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~-f~----~~~~i~~vVltK~D~~~~ 255 (494)
+.+.++||||........ ......+|.+++|+|++....... .... +. ...|+ .+|+||+|....
T Consensus 44 ~~l~i~D~~G~~~~~~~~------~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~ 116 (160)
T cd04156 44 LSLTVWDVGGQEKMRTVW------KCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPV-VLLANKQDLPGA 116 (160)
T ss_pred eEEEEEECCCCHhHHHHH------HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCE-EEEEECcccccC
Confidence 678999999975322111 112346799999999986532111 1111 11 12344 999999998532
Q ss_pred ccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHH
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~ 309 (494)
.. ...+....+. +.... +...+...+|+..|.| ++++++++.+
T Consensus 117 ~~-~~~i~~~~~~--------~~~~~-~~~~~~~~~Sa~~~~g-v~~~~~~i~~ 159 (160)
T cd04156 117 LT-AEEITRRFKL--------KKYCS-DRDWYVQPCSAVTGEG-LAEAFRKLAS 159 (160)
T ss_pred cC-HHHHHHHcCC--------cccCC-CCcEEEEecccccCCC-hHHHHHHHhc
Confidence 11 1111111110 01100 0111345689999999 9999888753
No 139
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=99.00 E-value=2.7e-09 Score=106.83 Aligned_cols=40 Identities=30% Similarity=0.258 Sum_probs=37.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~ 142 (494)
+|++.|..||||||++.+||..|+++|++|++||.|++-.
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~ 41 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKAD 41 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence 6899999999999999999999999999999999998654
No 140
>PRK10037 cell division protein; Provisional
Probab=99.00 E-value=6.1e-09 Score=103.02 Aligned_cols=138 Identities=12% Similarity=0.075 Sum_probs=79.9
Q ss_pred EEEEEcC-CCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhH-------------HHHH------h--hhhccCccee
Q 011076 103 VIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-------------DQLK------Q--NATKAKIPFY 160 (494)
Q Consensus 103 vI~lvG~-~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~-------------~qLk------~--~~~~~~i~~~ 160 (494)
+|++++. .||||||++.+||..|+++|+||++||+|++..... +.+. . .....++.+.
T Consensus 3 ~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii 82 (250)
T PRK10037 3 ILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDNLLRLSFNVDFTHRQGWARALLDGQDWRDAGLRYTSQLDLL 82 (250)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChhhhHHHHhCCCccccchHHHHHhcCCCchhhhccccCCeEEE
Confidence 6777754 599999999999999999999999999999754221 0000 0 0001233333
Q ss_pred ccCCCCC-----hH------HHHHHHHHHHhc-cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc
Q 011076 161 GSYTESD-----PV------RIAVEGVETFKK-ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA 228 (494)
Q Consensus 161 ~~~~~~d-----p~------~i~~~~l~~~~~-~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~ 228 (494)
+...... +. ......+..++. ..|||||||||+..... .......+|.+++++.+..
T Consensus 83 p~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iiIDtpp~~~~~--------~~~al~aaD~vlvpv~~~~--- 151 (250)
T PRK10037 83 PFGQLSIEEQENPQHWQTRLGDICSALQQLKASGRYQWILLDLPRGASPL--------TRQLLSLCDHSLAIVNVDA--- 151 (250)
T ss_pred cCCCCCHHHHHHHHHHHHhHHHHHHHHHHhcccCCCCEEEEECCCCccHH--------HHHHHHhCCEEEEEcCcCH---
Confidence 3211000 00 012344454532 57999999999986421 1122345799999998752
Q ss_pred HHHHHHHHhccCC-eeEEEEeCccC
Q 011076 229 AFDQAQAFKQSVS-VGAVIVTKMDG 252 (494)
Q Consensus 229 ~~~~~~~f~~~~~-i~~vVltK~D~ 252 (494)
....+......+ ...+++|+++.
T Consensus 152 -~~~i~~~~~~~~~~~~i~~n~~~~ 175 (250)
T PRK10037 152 -NCHIRLHQQALPAGAHILINDLRI 175 (250)
T ss_pred -HHHHhhhccccCCCeEEEEecCCc
Confidence 222332222211 12577898874
No 141
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.00 E-value=7.4e-09 Score=97.47 Aligned_cols=158 Identities=20% Similarity=0.213 Sum_probs=86.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCc-eEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWK-PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~k-VaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
...|+++|.+||||||+++.|+ +.+ +.-++.. ..+++ .+.++.
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~------~~~~~~~~~~~-----------~~~t~-~~~~~~------------------ 67 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALT------NRKNLARTSKT-----------PGRTQ-LINFFE------------------ 67 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHh------CCCCcccccCC-----------CCcee-EEEEEe------------------
Confidence 3459999999999999999999 543 3333321 11111 122111
Q ss_pred hccCCcEEEEeCCCCCch--h----HHHHHHHHHHHH-hcCCCEEEEEecCCCcccHHH--HHHHHhc-cCCeeEEEEeC
Q 011076 180 KKENCDLIIVDTSGRHKQ--E----AALFEEMRQVSE-ATNPDLVIFVMDSSIGQAAFD--QAQAFKQ-SVSVGAVIVTK 249 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~--~----~~l~~el~~i~~-~~~~d~vllVvDa~~g~~~~~--~~~~f~~-~~~i~~vVltK 249 (494)
.+.++.|+||||.... . +.....+..... ....+.+++|+|+..+....+ ....+.. ..+ ..+++||
T Consensus 68 --~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~-~iiv~nK 144 (196)
T PRK00454 68 --VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIP-VLIVLTK 144 (196)
T ss_pred --cCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCc-EEEEEEC
Confidence 0357899999996321 1 111111111112 223467888889775433222 2233332 233 3889999
Q ss_pred ccCCCCccchhHHHHhcCCCeEEecccccc-ccccc-cCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 250 MDGHAKGGGALSAVAATKSPVIFIGTGEHM-DEFEV-FDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 250 ~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~-f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
+|....+. .-.... .+ ..+.. ..+..++|++.|.| ++.+++.+.+.+.
T Consensus 145 ~Dl~~~~~-~~~~~~-------------~i~~~l~~~~~~~~~~Sa~~~~g-i~~l~~~i~~~~~ 194 (196)
T PRK00454 145 ADKLKKGE-RKKQLK-------------KVRKALKFGDDEVILFSSLKKQG-IDELRAAIAKWLA 194 (196)
T ss_pred cccCCHHH-HHHHHH-------------HHHHHHHhcCCceEEEEcCCCCC-HHHHHHHHHHHhc
Confidence 99864321 111110 01 01111 23455789999999 9999999988764
No 142
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=98.99 E-value=2.8e-09 Score=108.24 Aligned_cols=43 Identities=28% Similarity=0.246 Sum_probs=38.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchh
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA 144 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a 144 (494)
++|+|+|..||||||++.+||..|++.|+||++||+|++...+
T Consensus 5 ~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~~ 47 (295)
T PRK13234 5 RQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADST 47 (295)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecccccccc
Confidence 5788889999999999999999999999999999999975443
No 143
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=98.99 E-value=5.9e-09 Score=118.73 Aligned_cols=148 Identities=17% Similarity=0.120 Sum_probs=92.0
Q ss_pred CCCeEEEEEcC-CCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhh---------------------hhccC
Q 011076 99 GKPSVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQN---------------------ATKAK 156 (494)
Q Consensus 99 ~~~~vI~lvG~-~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~---------------------~~~~~ 156 (494)
..+++|+|++. +|+||||++.+||..|++.|++|++||+|+++|.....+... ....+
T Consensus 544 ~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~ 623 (754)
T TIGR01005 544 AEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVAREVSGLLDLLAGLRSLLLDLTASGAAS 623 (754)
T ss_pred CCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHhCCcccCChHHHHcCCccHHHHhccCCCCC
Confidence 35678888855 699999999999999999999999999999987543322110 01123
Q ss_pred cceeccCC-CCChHHH-----HHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCC-ccc-
Q 011076 157 IPFYGSYT-ESDPVRI-----AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSI-GQA- 228 (494)
Q Consensus 157 i~~~~~~~-~~dp~~i-----~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~-g~~- 228 (494)
+.+.+... ..+|..+ ..+.+..++ +.||+||||||+.....+.. . + +..+|.+++|+.+.. ...
T Consensus 624 l~~l~~g~~~~~~~~ll~~~~~~~~l~~l~-~~yD~IiID~pp~~~~~d~~--~---l--~~~~D~vl~v~~~~~~~~~~ 695 (754)
T TIGR01005 624 LPMLDSGLFPHGITELLASPAMFSLVIHAR-LYSDCVVVDVGTADPVRDMR--A---A--ARLAIIMLLVTAYDRVVVEC 695 (754)
T ss_pred eeEecCCCCCCCHHHHhccHHHHHHHHHHH-hhCCEEEEcCCCcchhHHHH--H---h--hhhCCeEEEEEEeCceeHHH
Confidence 33333221 1233332 233445543 57999999999987533221 1 1 124688888887642 111
Q ss_pred HHHHHHHHhc-cCCeeEEEEeCccCCC
Q 011076 229 AFDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 229 ~~~~~~~f~~-~~~i~~vVltK~D~~~ 254 (494)
..+..+.+.. ..++.|+|+|++|...
T Consensus 696 ~~~~~~~l~~~~~~~~GvvlN~~~~~~ 722 (754)
T TIGR01005 696 GRADAQGISRLNGEVTGVFLNMLDPND 722 (754)
T ss_pred HHHHHHHHHhcCCceEEEEecCCChhh
Confidence 2223333332 2456799999999654
No 144
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.99 E-value=8.1e-09 Score=97.77 Aligned_cols=158 Identities=23% Similarity=0.230 Sum_probs=96.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCc-eEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWK-PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~k-VaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
.-|+|+|++||||||++|.|. |++ .+=++.-|. -|+. +.||..
T Consensus 25 ~EIaF~GRSNVGKSSlIN~l~------~~k~LArtSktPG-----------rTq~-iNff~~------------------ 68 (200)
T COG0218 25 PEIAFAGRSNVGKSSLINALT------NQKNLARTSKTPG-----------RTQL-INFFEV------------------ 68 (200)
T ss_pred cEEEEEccCcccHHHHHHHHh------CCcceeecCCCCC-----------ccce-eEEEEe------------------
Confidence 359999999999999999999 754 566776332 2222 333331
Q ss_pred ccCCcEEEEeCCCCCch--hHHHHHHHH----HHHHh-cCCCEEEEEecCCCcccHHH--HHHHHhcc-CCeeEEEEeCc
Q 011076 181 KENCDLIIVDTSGRHKQ--EAALFEEMR----QVSEA-TNPDLVIFVMDSSIGQAAFD--QAQAFKQS-VSVGAVIVTKM 250 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~--~~~l~~el~----~i~~~-~~~d~vllVvDa~~g~~~~~--~~~~f~~~-~~i~~vVltK~ 250 (494)
+..+.+||-||+.-. .....+... +.... .+-..+++++|+..+....+ ....+... ++ ..+|+||+
T Consensus 69 --~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~-~~vv~tK~ 145 (200)
T COG0218 69 --DDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIP-VIVVLTKA 145 (200)
T ss_pred --cCcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCC-eEEEEEcc
Confidence 123789999998422 122222222 22221 12456899999998765544 33444433 34 49999999
Q ss_pred cCCCCccch--hHHHHhcCCCeEEecccccccccccc-Cc-cchhhcccCCCCchHHHHHHHHhCC
Q 011076 251 DGHAKGGGA--LSAVAATKSPVIFIGTGEHMDEFEVF-DV-KPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 251 D~~~~~g~~--ls~~~~~g~Pi~fi~~Ge~i~~l~~f-~p-~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
|...++... +.... +.+. +.+. .+ ..+.|...+.| ++.|...|.+.+.
T Consensus 146 DKi~~~~~~k~l~~v~------------~~l~-~~~~~~~~~~~~ss~~k~G-i~~l~~~i~~~~~ 197 (200)
T COG0218 146 DKLKKSERNKQLNKVA------------EELK-KPPPDDQWVVLFSSLKKKG-IDELKAKILEWLK 197 (200)
T ss_pred ccCChhHHHHHHHHHH------------HHhc-CCCCccceEEEEecccccC-HHHHHHHHHHHhh
Confidence 998765432 22222 1110 1111 11 56788999999 9999999888764
No 145
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=98.99 E-value=9e-09 Score=101.42 Aligned_cols=143 Identities=20% Similarity=0.204 Sum_probs=83.2
Q ss_pred eEEEEE-cCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchh--------------HHHHHh----------hhhccC
Q 011076 102 SVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA--------------FDQLKQ----------NATKAK 156 (494)
Q Consensus 102 ~vI~lv-G~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a--------------~~qLk~----------~~~~~~ 156 (494)
++|+|+ +..||||||++.+||.+|+++|++|++|++|++.+.. .+.+.. .....+
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 81 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRLKN 81 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCCCCCeeEEeCCCCcCCCCHHHHhcCcCcHHHHhhcCCCCCC
Confidence 467777 5569999999999999999999999999999863211 111100 001123
Q ss_pred cceeccCCCCCh----HHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc--cHH
Q 011076 157 IPFYGSYTESDP----VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAF 230 (494)
Q Consensus 157 i~~~~~~~~~dp----~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~--~~~ 230 (494)
+.+.+.....+. .....+.+..+. ..||+||||||+..... .. .....+|.+++|+++.... ...
T Consensus 82 l~~l~~~~~~~~~~~~~~~l~~~l~~l~-~~~D~viiD~p~~~~~~--~~------~~l~~aD~viiv~~~~~~s~~~~~ 152 (261)
T TIGR01968 82 LYLLPASQTRDKDAVTPEQMKKLVNELK-EEFDYVIIDCPAGIESG--FR------NAVAPADEAIVVTTPEVSAVRDAD 152 (261)
T ss_pred eEEEeCCCchhhhhCCHHHHHHHHHHHH-HhCCEEEEeCCCCcCHH--HH------HHHHhCCeEEEEcCCCcHHHHHHH
Confidence 333332211110 122344555554 47999999999876422 11 1123578999999886421 111
Q ss_pred HHHHHHhcc-CCeeEEEEeCccCC
Q 011076 231 DQAQAFKQS-VSVGAVIVTKMDGH 253 (494)
Q Consensus 231 ~~~~~f~~~-~~i~~vVltK~D~~ 253 (494)
.....+... ....++|+|+++..
T Consensus 153 ~~~~~l~~~~~~~~~iviN~~~~~ 176 (261)
T TIGR01968 153 RVIGLLEAKGIEKIHLIVNRLRPE 176 (261)
T ss_pred HHHHHHHHcCCCceEEEEeCcCch
Confidence 222222221 22348999999853
No 146
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.98 E-value=6.5e-09 Score=97.84 Aligned_cols=158 Identities=15% Similarity=0.097 Sum_probs=85.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|++||||||+++.+. +.++..+.+ +..+ .+ .. ...
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~------~~~~~~~~~-t~~~-------------~~--~~-----------------~~~ 58 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLK------NDRLAQHQP-TQHP-------------TS--EE-----------------LAI 58 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHh------cCCCcccCC-cccc-------------ce--EE-----------------EEE
Confidence 459999999999999999998 554432211 1100 00 00 001
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHHh-----ccCCeeEEEEeCccCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFK-----QSVSVGAVIVTKMDGH 253 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f~-----~~~~i~~vVltK~D~~ 253 (494)
.++.+.++||||...... +.. .....++.+++|+|++..... ......+. ...| ..+|+||.|..
T Consensus 59 ~~~~~~~~D~~G~~~~~~-~~~-----~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~ 131 (184)
T smart00178 59 GNIKFTTFDLGGHQQARR-LWK-----DYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVP-FLILGNKIDAP 131 (184)
T ss_pred CCEEEEEEECCCCHHHHH-HHH-----HHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCC-EEEEEeCcccc
Confidence 256789999999854321 111 223468999999999753211 11111121 1234 49999999974
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
... ..-.+....+.+-.....++. .. .......+|++.|.| ++++++.+.+.
T Consensus 132 ~~~-~~~~i~~~l~l~~~~~~~~~~--~~-~~~~i~~~Sa~~~~g-~~~~~~wl~~~ 183 (184)
T smart00178 132 YAA-SEDELRYALGLTNTTGSKGKV--GV-RPLEVFMCSVVRRMG-YGEGFKWLSQY 183 (184)
T ss_pred CCC-CHHHHHHHcCCCccccccccc--CC-ceeEEEEeecccCCC-hHHHHHHHHhh
Confidence 221 111222222221000000000 00 122246789999999 99999988654
No 147
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.98 E-value=2e-09 Score=95.43 Aligned_cols=153 Identities=18% Similarity=0.125 Sum_probs=78.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|.+||||||+++++. +.+ .....++ ..+..-..... . ..
T Consensus 3 ki~~~G~~~~GKstl~~~l~------~~~-~~~~~~~-----------~~~~~~~~~~~--~----------------~~ 46 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLL------GNK-FITEYKP-----------GTTRNYVTTVI--E----------------ED 46 (161)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCC-CcCcCCC-----------CceeeeeEEEE--E----------------EC
Confidence 58999999999999999998 443 2222110 11111111000 0 01
Q ss_pred C--CcEEEEeCCCCCchhHHHHHHHHHHHH-hcCCCEEEEEecCCCcc-cHHHHHHHHhc-cCCeeEEEEeCccCCCCcc
Q 011076 183 N--CDLIIVDTSGRHKQEAALFEEMRQVSE-ATNPDLVIFVMDSSIGQ-AAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGG 257 (494)
Q Consensus 183 ~--~dvIIIDTaG~~~~~~~l~~el~~i~~-~~~~d~vllVvDa~~g~-~~~~~~~~f~~-~~~i~~vVltK~D~~~~~g 257 (494)
+ +.+.++||||................. +...|.+++|.|+..+. ........+.. ..|+ .+|+||+|.....
T Consensus 47 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~- 124 (161)
T TIGR00231 47 GKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPI-ILVGNKIDLRDAK- 124 (161)
T ss_pred CEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcE-EEEEEcccCCcch-
Confidence 3 678999999964433221111111111 11244445555544332 22222222222 3444 8999999986532
Q ss_pred chhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHH
Q 011076 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIH 308 (494)
Q Consensus 258 ~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~ 308 (494)
...... ..+.. ....+...+|+..|.| +..+++.+.
T Consensus 125 -~~~~~~------------~~~~~-~~~~~~~~~sa~~~~g-v~~~~~~l~ 160 (161)
T TIGR00231 125 -LKTHVA------------FLFAK-LNGEPIIPLSAETGKN-IDSAFKIVE 160 (161)
T ss_pred -hhHHHH------------HHHhh-ccCCceEEeecCCCCC-HHHHHHHhh
Confidence 111111 11111 1234456789999999 888887764
No 148
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=98.97 E-value=1.1e-08 Score=107.81 Aligned_cols=45 Identities=27% Similarity=0.167 Sum_probs=38.4
Q ss_pred CCCeEEEEEcC-CCCcHHHHHHHHHHHHHhcCCceEEEEc-ccCcch
Q 011076 99 GKPSVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCA-DTFRAG 143 (494)
Q Consensus 99 ~~~~vI~lvG~-~GvGKTTl~~kLA~~l~~~g~kVaiVs~-D~~r~~ 143 (494)
.++++|+|+.. .||||||++.+||.+|+++|+||++||+ |++...
T Consensus 104 ~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~nl 150 (388)
T PRK13705 104 VFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTA 150 (388)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCch
Confidence 34678888754 5999999999999999999999999996 987643
No 149
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.97 E-value=4.7e-09 Score=102.45 Aligned_cols=197 Identities=16% Similarity=0.117 Sum_probs=99.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHh--hhhccCcceec---cCCCCChHHHHHHHHHH
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQ--NATKAKIPFYG---SYTESDPVRIAVEGVET 178 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~--~~~~~~i~~~~---~~~~~dp~~i~~~~l~~ 178 (494)
|+++|.+|+||||+++.+.......|.-.+.+..|.++...-..... .....+....+ .+...... ..+.+.
T Consensus 2 v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~ 78 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLS---ESDIEI 78 (224)
T ss_pred EEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccc---ccccee
Confidence 78899999999999999996544445555555555332211000000 00000000000 00000000 000112
Q ss_pred HhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH--HHHHHHh-ccCCeeEEEEeCccCCCC
Q 011076 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAFK-QSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 179 ~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~--~~~~~f~-~~~~i~~vVltK~D~~~~ 255 (494)
....++.+.+|||||.... ......-.....+|.+++|+|+..+.... ..+.... ..+|+ .+|+||+|...+
T Consensus 79 ~~~~~~~i~liDtpG~~~~----~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~-ivvvNK~D~~~~ 153 (224)
T cd04165 79 CEKSSKLVTFIDLAGHERY----LKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPV-FVVVTKIDLAPA 153 (224)
T ss_pred eeeCCcEEEEEECCCcHHH----HHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCE-EEEEECccccCH
Confidence 2334678899999997432 22221111113589999999998764332 2233222 23554 899999998543
Q ss_pred cc--chhH-HHHhcC------CCeEEeccccccc-----cccccCccchhhcccCCCCchHHHHHHHH
Q 011076 256 GG--GALS-AVAATK------SPVIFIGTGEHMD-----EFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (494)
Q Consensus 256 ~g--~~ls-~~~~~g------~Pi~fi~~Ge~i~-----~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~ 309 (494)
.. ..+. +..... .|.......+-+. ......|.+.+|+..|.| ++.|.+.+..
T Consensus 154 ~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~G-i~~L~~~L~~ 220 (224)
T cd04165 154 NILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEG-LDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccC-HHHHHHHHHh
Confidence 21 1122 111222 3332222211111 123344778899999999 8888877654
No 150
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=98.96 E-value=5.9e-09 Score=94.08 Aligned_cols=103 Identities=24% Similarity=0.231 Sum_probs=70.9
Q ss_pred EEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhccCCc
Q 011076 106 FVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCD 185 (494)
Q Consensus 106 lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~~~d 185 (494)
..+.+|+||||++..+|.+++.+|++|.++++|++++.. .||
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~--------------------------------------~yd 46 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL--------------------------------------DYD 46 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC--------------------------------------CCC
Confidence 347789999999999999999999999999999865411 189
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc--cHHHHHHHHhcc--CCeeEEEEeCccCCC
Q 011076 186 LIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQS--VSVGAVIVTKMDGHA 254 (494)
Q Consensus 186 vIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~--~~~~~~~~f~~~--~~i~~vVltK~D~~~ 254 (494)
+||||||+..... .. .....+|.+++|++++... +.....+.+.+. ....++|+|+++...
T Consensus 47 ~VIiD~p~~~~~~--~~------~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~~ 111 (139)
T cd02038 47 YIIIDTGAGISDN--VL------DFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESPK 111 (139)
T ss_pred EEEEECCCCCCHH--HH------HHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCHH
Confidence 9999999865322 11 1123568999999987432 112223333221 223489999997543
No 151
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.96 E-value=3.9e-09 Score=99.88 Aligned_cols=114 Identities=17% Similarity=0.200 Sum_probs=66.1
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH--HHHHHHh-ccCCeeEEEEeCccCCCCccc
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAFK-QSVSVGAVIVTKMDGHAKGGG 258 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~--~~~~~f~-~~~~i~~vVltK~D~~~~~g~ 258 (494)
.++.+.|+||||... +.... +..+..+|.+++|+|++.+.... +...... ...++ .+|+||+|.......
T Consensus 66 ~~~~~~i~DtpG~~~----~~~~~--~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~-iiv~NK~Dl~~~~~~ 138 (192)
T cd01889 66 ENLQITLVDCPGHAS----LIRTI--IGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKL-IVVLNKIDLIPEEER 138 (192)
T ss_pred cCceEEEEECCCcHH----HHHHH--HHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCE-EEEEECcccCCHHHH
Confidence 367899999999842 22222 12234579999999998754322 1111111 12344 799999998633211
Q ss_pred --hhHHHH-hcCCCeEEeccccccccc-cccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 259 --ALSAVA-ATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 259 --~ls~~~-~~g~Pi~fi~~Ge~i~~l-~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
.+.... ..+ ..+.+. ....+..++|++.|.| +++|++.+.+.++
T Consensus 139 ~~~~~~~~~~l~---------~~~~~~~~~~~~vi~iSa~~g~g-i~~L~~~l~~~~~ 186 (192)
T cd01889 139 ERKIEKMKKKLQ---------KTLEKTRFKNSPIIPVSAKPGGG-EAELGKDLNNLIV 186 (192)
T ss_pred HHHHHHHHHHHH---------HHHHhcCcCCCCEEEEeccCCCC-HHHHHHHHHhccc
Confidence 111111 000 001001 1234567899999999 9999999988775
No 152
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.96 E-value=8.8e-09 Score=93.46 Aligned_cols=107 Identities=21% Similarity=0.162 Sum_probs=59.8
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHHh-------ccCCeeEEEEeCccC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFK-------QSVSVGAVIVTKMDG 252 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f~-------~~~~i~~vVltK~D~ 252 (494)
++.+.++||||...... +.. .....+|.+++|+|++..... ......+. ...|+ .+|+||+|.
T Consensus 44 ~~~~~l~Dt~G~~~~~~-~~~-----~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-iiv~NK~Dl 116 (162)
T cd04157 44 NLSFTAFDMSGQGKYRG-LWE-----HYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPI-LFFANKMDL 116 (162)
T ss_pred CEEEEEEECCCCHhhHH-HHH-----HHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCE-EEEEeCccc
Confidence 56788999999754221 111 123468999999999854321 11122221 12444 899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccccccccccc-cCccchhhcccCCCCchHHHHHHHH
Q 011076 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEV-FDVKPFVSRLLGMGDWSGFMDKIHE 309 (494)
Q Consensus 253 ~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~-f~p~~~vs~~~G~Gdi~~L~e~i~~ 309 (494)
..... ...+....+ +..+.. ..+...+|++.|.| ++++++.+.+
T Consensus 117 ~~~~~-~~~~~~~l~-----------~~~~~~~~~~~~~~Sa~~g~g-v~~~~~~l~~ 161 (162)
T cd04157 117 PDALT-AVKITQLLG-----------LENIKDKPWHIFASNALTGEG-LDEGVQWLQA 161 (162)
T ss_pred cCCCC-HHHHHHHhC-----------CccccCceEEEEEeeCCCCCc-hHHHHHHHhc
Confidence 54311 111111111 111111 11234589999999 9999988753
No 153
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.95 E-value=4.8e-09 Score=96.13 Aligned_cols=106 Identities=13% Similarity=0.006 Sum_probs=59.8
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHHhc----cCCeeEEEEeCccCCCCc
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ----SVSVGAVIVTKMDGHAKG 256 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~~----~~~i~~vVltK~D~~~~~ 256 (494)
+.+.|+||||..... .+. ......+|.+++|+|++...... .....+.. ..|+ .+|.||+|.....
T Consensus 52 ~~l~i~D~~G~~~~~-----~~~-~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~nK~Dl~~~~ 124 (165)
T cd01864 52 VKLQIWDTAGQERFR-----TIT-QSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVL-LLIGNKCDLEEQR 124 (165)
T ss_pred EEEEEEECCChHHHH-----HHH-HHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcE-EEEEECccccccc
Confidence 578999999963211 111 12234689999999998643211 12222221 2344 8999999985432
Q ss_pred cchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 257 g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
....... ..+.......+...+|+..|.| ++.+++.+.+.
T Consensus 125 ~~~~~~~-------------~~~~~~~~~~~~~e~Sa~~~~~-v~~~~~~l~~~ 164 (165)
T cd01864 125 EVLFEEA-------------CTLAEKNGMLAVLETSAKESQN-VEEAFLLMATE 164 (165)
T ss_pred ccCHHHH-------------HHHHHHcCCcEEEEEECCCCCC-HHHHHHHHHHh
Confidence 1111111 0111111122346689999999 99999888654
No 154
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.95 E-value=1.1e-08 Score=91.55 Aligned_cols=148 Identities=18% Similarity=0.129 Sum_probs=81.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhccC
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~~ 183 (494)
|+++|++||||||+++.|. +.+.. .+ +.| ..++.+.... ...
T Consensus 2 i~i~G~~~~GKssl~~~l~------~~~~~---~~-~~~-----------t~~~~~~~~~-----------------~~~ 43 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIA------GGQFS---ED-TIP-----------TVGFNMRKVT-----------------KGN 43 (159)
T ss_pred EEEEcCCCCCHHHHHHHHc------cCCCC---cC-ccC-----------CCCcceEEEE-----------------ECC
Confidence 7899999999999999998 54321 10 001 0111111100 123
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHHh-----ccCCeeEEEEeCccCCCC
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFK-----QSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~-----~~~~i~~vVltK~D~~~~ 255 (494)
..+.++||||....... .. .....+|.+++|+|++...... .....+. ...|+ .+|+||+|....
T Consensus 44 ~~~~~~D~~g~~~~~~~----~~--~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D~~~~ 116 (159)
T cd04159 44 VTLKVWDLGGQPRFRSM----WE--RYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPL-LVLGNKNDLPGA 116 (159)
T ss_pred EEEEEEECCCCHhHHHH----HH--HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCE-EEEEeCccccCC
Confidence 56789999997532211 11 1234689999999987532211 1111111 12344 889999997543
Q ss_pred ccchhHHHHhcCCCeEEeccccccccc-cccCccchhhcccCCCCchHHHHHHHH
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i~~l-~~f~p~~~vs~~~G~Gdi~~L~e~i~~ 309 (494)
. ....+....+. ... ....+...+|+..|.| +..+++.+.+
T Consensus 117 ~-~~~~~~~~~~~-----------~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~ 158 (159)
T cd04159 117 L-SVDELIEQMNL-----------KSITDREVSCYSISCKEKTN-IDIVLDWLIK 158 (159)
T ss_pred c-CHHHHHHHhCc-----------ccccCCceEEEEEEeccCCC-hHHHHHHHhh
Confidence 2 11112211110 111 1112346689999999 9999988754
No 155
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.95 E-value=4.6e-09 Score=97.35 Aligned_cols=148 Identities=20% Similarity=0.158 Sum_probs=81.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|++||||||+++.|. +..+. .+.+ ..+..+... ..
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~------~~~~~-----~~~~-----------t~g~~~~~~-----------------~~ 55 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLL------GEDID-----TISP-----------TLGFQIKTL-----------------EY 55 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHc------cCCCC-----CcCC-----------ccccceEEE-----------------EE
Confidence 468999999999999999998 43221 1111 011111100 01
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHH-h----ccCCeeEEEEeCccCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAF-K----QSVSVGAVIVTKMDGH 253 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f-~----~~~~i~~vVltK~D~~ 253 (494)
+++.+.++||||...... + . ......+|.+++|+|++......+ ....+ . ...+ ..+|+||+|..
T Consensus 56 ~~~~l~l~D~~G~~~~~~-~---~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~ 128 (173)
T cd04154 56 EGYKLNIWDVGGQKTLRP-Y---W--RNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGAT-LLILANKQDLP 128 (173)
T ss_pred CCEEEEEEECCCCHHHHH-H---H--HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECcccc
Confidence 256789999999753221 1 1 112346899999999976432111 11111 1 1234 48999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccc-cccCccchhhcccCCCCchHHHHHHH
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLLGMGDWSGFMDKIH 308 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l-~~f~p~~~vs~~~G~Gdi~~L~e~i~ 308 (494)
... ..-.+....+ .... ....+...+|+..|.| ++.+++++.
T Consensus 129 ~~~-~~~~~~~~~~-----------~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~ 171 (173)
T cd04154 129 GAL-SEEEIREALE-----------LDKISSHHWRIQPCSAVTGEG-LLQGIDWLV 171 (173)
T ss_pred cCC-CHHHHHHHhC-----------ccccCCCceEEEeccCCCCcC-HHHHHHHHh
Confidence 431 1111111000 0000 1123456789999999 999888764
No 156
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=98.95 E-value=3e-08 Score=104.40 Aligned_cols=44 Identities=30% Similarity=0.317 Sum_probs=38.0
Q ss_pred CCCeEEEEE-cCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc
Q 011076 99 GKPSVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (494)
Q Consensus 99 ~~~~vI~lv-G~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~ 142 (494)
.++++|+|+ ...||||||++.+||.+|+..|+||++||+|++..
T Consensus 102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~~ 146 (387)
T TIGR03453 102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQAS 146 (387)
T ss_pred CCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 345778887 45699999999999999999999999999999754
No 157
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.94 E-value=6.3e-09 Score=94.61 Aligned_cols=153 Identities=12% Similarity=0.064 Sum_probs=81.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
-.|+++|.+||||||+++++. +... + +.+.+. .... +...... ..
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~------~~~~--~--~~~~~t---------~~~~--~~~~~~~--------------~~ 47 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFI------QSYF--V--TDYDPT---------IEDS--YTKQCEI--------------DG 47 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHH------hCCC--C--cccCCC---------ccce--EEEEEEE--------------CC
Confidence 359999999999999999998 3221 1 111110 0000 0000000 00
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHh-----ccCCeeEEEEeCccCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK-----QSVSVGAVIVTKMDGH 253 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~-----~~~~i~~vVltK~D~~ 253 (494)
..+.+.|+||||...... +.. .....+|.+++|+|++......+ ....+. ...|+ .+|.||+|..
T Consensus 48 ~~~~~~i~Dt~G~~~~~~-~~~-----~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-iiv~NK~Dl~ 120 (164)
T cd04145 48 QWAILDILDTAGQEEFSA-MRE-----QYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPM-ILVGNKADLE 120 (164)
T ss_pred EEEEEEEEECCCCcchhH-HHH-----HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCE-EEEeeCcccc
Confidence 134678899999754321 211 11235789999999975432111 111221 12344 8899999985
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
........... +....+. .+...+|+..|.| +..+++.+.+.+
T Consensus 121 ~~~~~~~~~~~------------~~~~~~~--~~~~~~Sa~~~~~-i~~l~~~l~~~~ 163 (164)
T cd04145 121 HQRKVSREEGQ------------ELARKLK--IPYIETSAKDRLN-VDKAFHDLVRVI 163 (164)
T ss_pred ccceecHHHHH------------HHHHHcC--CcEEEeeCCCCCC-HHHHHHHHHHhh
Confidence 43211111111 0001111 2446789999999 999998886653
No 158
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.94 E-value=7e-09 Score=95.54 Aligned_cols=150 Identities=19% Similarity=0.186 Sum_probs=82.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|++||||||+++.+. +..+... .+ ..++.+....
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~------~~~~~~~-----~~-----------t~g~~~~~i~----------------- 54 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLA------SEDISHI-----TP-----------TQGFNIKTVQ----------------- 54 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHh------cCCCccc-----CC-----------CCCcceEEEE-----------------
Confidence 4569999999999999999998 5432211 11 0111111100
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHH-h----ccCCeeEEEEeCccC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAF-K----QSVSVGAVIVTKMDG 252 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f-~----~~~~i~~vVltK~D~ 252 (494)
..+.++.++||||....... .. .....++.+++|+|++....... ....+ . ...|+ .+++||+|.
T Consensus 55 ~~~~~~~~~D~~G~~~~~~~----~~--~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~ 127 (173)
T cd04155 55 SDGFKLNVWDIGGQRAIRPY----WR--NYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPV-LVFANKQDL 127 (173)
T ss_pred ECCEEEEEEECCCCHHHHHH----HH--HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCE-EEEEECCCC
Confidence 12567899999997532211 11 11236788999999875321111 11111 1 12344 788999998
Q ss_pred CCCccchhHHHHhcCCCeEEecccccccccc-ccCccchhhcccCCCCchHHHHHHHH
Q 011076 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHE 309 (494)
Q Consensus 253 ~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~-~f~p~~~vs~~~G~Gdi~~L~e~i~~ 309 (494)
..... ...+....+ +.++. ...+...+|+..|.| ++.+++++.+
T Consensus 128 ~~~~~-~~~i~~~l~-----------~~~~~~~~~~~~~~Sa~~~~g-i~~~~~~l~~ 172 (173)
T cd04155 128 ATAAP-AEEIAEALN-----------LHDLRDRTWHIQACSAKTGEG-LQEGMNWVCK 172 (173)
T ss_pred ccCCC-HHHHHHHcC-----------CcccCCCeEEEEEeECCCCCC-HHHHHHHHhc
Confidence 54321 112222111 11111 111234689999999 9999988754
No 159
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.94 E-value=1.3e-08 Score=100.91 Aligned_cols=122 Identities=22% Similarity=0.322 Sum_probs=71.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
+..|+++|.+||||||++|.|. |.+++.++. +.+ ++..-..+.. .
T Consensus 31 ~~~IllvG~tGvGKSSliNaLl------g~~~~~v~~--~~~---------~T~~~~~~~~--~---------------- 75 (249)
T cd01853 31 SLTILVLGKTGVGKSSTINSIF------GERKAATSA--FQS---------ETLRVREVSG--T---------------- 75 (249)
T ss_pred CeEEEEECCCCCcHHHHHHHHh------CCCCcccCC--CCC---------ceEEEEEEEE--E----------------
Confidence 4579999999999999999999 877766643 222 1111111111 0
Q ss_pred ccCCcEEEEeCCCCCchh------HHHHHHHHHHHHhcCCCEEEEEecCCCc---ccHHHHHHHHhccC-----CeeEEE
Q 011076 181 KENCDLIIVDTSGRHKQE------AALFEEMRQVSEATNPDLVIFVMDSSIG---QAAFDQAQAFKQSV-----SVGAVI 246 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~------~~l~~el~~i~~~~~~d~vllVvDa~~g---~~~~~~~~~f~~~~-----~i~~vV 246 (494)
..+..+.+|||||..... +.....+........++.+++|...... ......++.+.+.+ ....+|
T Consensus 76 ~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV 155 (249)
T cd01853 76 VDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVV 155 (249)
T ss_pred ECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEE
Confidence 136788999999997552 1222222223333357788888644321 12223333333321 236999
Q ss_pred EeCccCCCCcc
Q 011076 247 VTKMDGHAKGG 257 (494)
Q Consensus 247 ltK~D~~~~~g 257 (494)
+||+|.....+
T Consensus 156 ~T~~d~~~p~~ 166 (249)
T cd01853 156 LTHAASSPPDG 166 (249)
T ss_pred EeCCccCCCCC
Confidence 99999876543
No 160
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=98.94 E-value=1.6e-08 Score=99.34 Aligned_cols=143 Identities=19% Similarity=0.210 Sum_probs=87.7
Q ss_pred eEEEEEcCC-CCcHHHHHHHHHHHHHhcCCceEEEEcccCc-------------chh-HH-------HHHhhhhccCcce
Q 011076 102 SVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFR-------------AGA-FD-------QLKQNATKAKIPF 159 (494)
Q Consensus 102 ~vI~lvG~~-GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r-------------~~a-~~-------qLk~~~~~~~i~~ 159 (494)
++|+|+|+- ||||||++++||..|++.|++|.+|+.||.- .|- .. +-..+....++.|
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~~~~~~g~~~ 81 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQNLLRLHFGLPLDDRDGWARALLDGADWQQAAYRYSDGVDF 81 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHhcCCCCcccccHHHHHhCCCCHHHHhhccCCCCEE
Confidence 479999997 9999999999999999999999999999721 110 00 1111223345555
Q ss_pred eccCCCC------------ChHHHHHHHHHHHh-ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCc
Q 011076 160 YGSYTES------------DPVRIAVEGVETFK-KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG 226 (494)
Q Consensus 160 ~~~~~~~------------dp~~i~~~~l~~~~-~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g 226 (494)
.+..... +|.. ..+.+..+. ...+++||+|||...... ... ....+|.++.|+.+...
T Consensus 82 LPfG~l~~~~~~~~~~l~~~~~~-l~~~l~~l~~~~~~~~iliD~P~g~~~~---~~~-----al~~aD~vL~V~~~Da~ 152 (243)
T PF06564_consen 82 LPFGQLTEAEREAFEQLAQDPQW-LARALAALKALGPYDWILIDTPPGPSPY---TRQ-----ALAAADLVLVVVNPDAA 152 (243)
T ss_pred EcCCCCCHHHHHHHHHhhcCHHH-HHHHHHHHhccCCCCEEEEeCCCCCcHH---HHH-----HHHhCCeEEEEeCCCHH
Confidence 4422211 1222 345566665 567999999998865321 111 12246888888877532
Q ss_pred ccHHHHHHHHhccCC-eeEEEEeCccCCCCcc
Q 011076 227 QAAFDQAQAFKQSVS-VGAVIVTKMDGHAKGG 257 (494)
Q Consensus 227 ~~~~~~~~~f~~~~~-i~~vVltK~D~~~~~g 257 (494)
..+..-...++ -..+|+|+.|..+.-.
T Consensus 153 ----s~~~L~q~~l~~~~~~liNq~~~~s~l~ 180 (243)
T PF06564_consen 153 ----SHARLHQRALPAGHRFLINQYDPASQLQ 180 (243)
T ss_pred ----HHHHHHHhcccCCcEEEEeccCccchHH
Confidence 11111111121 2488999999876643
No 161
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=98.94 E-value=5e-08 Score=100.14 Aligned_cols=117 Identities=21% Similarity=0.293 Sum_probs=73.5
Q ss_pred CCeEEEEEc-CCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhH-------------HHHHh-------------hh
Q 011076 100 KPSVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-------------DQLKQ-------------NA 152 (494)
Q Consensus 100 ~~~vI~lvG-~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~-------------~qLk~-------------~~ 152 (494)
..++|+|+| ..|+||||++.+||.+++++|++|++||.|++..+.- ..+.. ..
T Consensus 92 ~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 171 (322)
T TIGR03815 92 RGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGGLDLLLGAEDVPGLRWPDLSQARGRLPAGALRDALP 171 (322)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCCeeeeecCCCCCCcCHHHHhhcCCCcCHHHHHHhCC
Confidence 357888886 5699999999999999999999999999998765421 00100 00
Q ss_pred hccCcceeccCCCC---ChHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011076 153 TKAKIPFYGSYTES---DPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSI 225 (494)
Q Consensus 153 ~~~~i~~~~~~~~~---dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~ 225 (494)
+..++.+....... -........+..+ ...|||||||||+..... . ......+|.+++|++++.
T Consensus 172 ~~~~l~vl~~~~~~~~~~~~~~l~~~l~~l-~~~~D~VIID~p~~~~~~--~------~~~L~~AD~vliV~~~~~ 238 (322)
T TIGR03815 172 RRGGLSVLSWGRAVGAALPPAAVRAVLDAA-RRGGDLVVVDLPRRLTPA--A------ETALESADLVLVVVPADV 238 (322)
T ss_pred CcCCeEEEecCCCCcCCCCHHHHHHHHHHH-HhcCCEEEEeCCCCCCHH--H------HHHHHHCCEEEEEcCCcH
Confidence 11233222211110 1122344455544 357999999999886422 1 112235799999998763
No 162
>PRK13236 nitrogenase reductase; Reviewed
Probab=98.93 E-value=1.3e-08 Score=103.46 Aligned_cols=43 Identities=26% Similarity=0.232 Sum_probs=39.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcch
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~ 143 (494)
-++|.|.|..||||||++.+||..|++.|+||++|++|++-+.
T Consensus 6 ~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~ 48 (296)
T PRK13236 6 IRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADS 48 (296)
T ss_pred ceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCc
Confidence 4689999999999999999999999999999999999986533
No 163
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=98.93 E-value=9.2e-09 Score=87.54 Aligned_cols=72 Identities=29% Similarity=0.316 Sum_probs=57.3
Q ss_pred EEEEEc-CCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 103 VIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 103 vI~lvG-~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
+|+|+| ..|+||||++..||.+|+++|.+|+++++|++
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~----------------------------------------- 39 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ----------------------------------------- 39 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC-----------------------------------------
Confidence 367776 45999999999999999999999999999875
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSI 225 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~ 225 (494)
||+||||||+....... .....+|.++++++++.
T Consensus 40 --~d~viiD~p~~~~~~~~--------~~l~~ad~viv~~~~~~ 73 (104)
T cd02042 40 --YDYIIIDTPPSLGLLTR--------NALAAADLVLIPVQPSP 73 (104)
T ss_pred --CCEEEEeCcCCCCHHHH--------HHHHHCCEEEEeccCCH
Confidence 78999999998643211 11224799999999864
No 164
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.93 E-value=9.6e-09 Score=98.24 Aligned_cols=160 Identities=13% Similarity=0.046 Sum_probs=84.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|.+||||||+++.++ +.+. .+.|.|..... ....... .. ..
T Consensus 2 kI~ivG~~~vGKTsLi~~~~------~~~f----~~~~~pt~~~~-------~~~~~i~-~~----------------~~ 47 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFL------AQEF----PEEYIPTEHRR-------LYRPAVV-LS----------------GR 47 (198)
T ss_pred EEEEECCCCCcHHHHHHHHH------cCCC----CcccCCccccc-------cceeEEE-EC----------------CE
Confidence 48999999999999999988 3221 11122211000 0000000 00 12
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHH--HHHHhcCCCEEEEEecCCCcccHHH---HHHHHh-------ccCCeeEEEEeCc
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMR--QVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK-------QSVSVGAVIVTKM 250 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~--~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~-------~~~~i~~vVltK~ 250 (494)
.+.+.|+||||.........++.. .......+|.+++|+|++....... ....+. ...|+ .+|.||+
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~pi-iivgNK~ 126 (198)
T cd04142 48 VYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPI-VVVGNKR 126 (198)
T ss_pred EEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCE-EEEEECc
Confidence 367889999997432111111111 1222346899999999986432211 111111 22344 8999999
Q ss_pred cCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 251 D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
|.....-...... +.+..-....+...+|++.|.| ++.|++.+.+.+
T Consensus 127 Dl~~~~~~~~~~~-------------~~~~~~~~~~~~~e~Sak~g~~-v~~lf~~i~~~~ 173 (198)
T cd04142 127 DQQRHRFAPRHVL-------------SVLVRKSWKCGYLECSAKYNWH-ILLLFKELLISA 173 (198)
T ss_pred cccccccccHHHH-------------HHHHHHhcCCcEEEecCCCCCC-HHHHHHHHHHHh
Confidence 9854211000000 1110001123456789999999 999998887654
No 165
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=98.92 E-value=1.1e-08 Score=88.23 Aligned_cols=73 Identities=25% Similarity=0.324 Sum_probs=56.6
Q ss_pred EEEE-cCCCCcHHHHHHHHHHHHHhc-CCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 104 IMFV-GLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 104 I~lv-G~~GvGKTTl~~kLA~~l~~~-g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
|+++ +..|+||||++..||..+++. |++|+++++|+++..
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~-------------------------------------- 43 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD-------------------------------------- 43 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCC--------------------------------------
Confidence 5555 556999999999999999997 999999999997552
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSI 225 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~ 225 (494)
|+||||||+...... ......+|.+++|+++..
T Consensus 44 ---D~IIiDtpp~~~~~~--------~~~l~~aD~vlvvv~~~~ 76 (106)
T cd03111 44 ---DYVVVDLGRSLDEVS--------LAALDQADRVFLVTQQDL 76 (106)
T ss_pred ---CEEEEeCCCCcCHHH--------HHHHHHcCeEEEEecCCh
Confidence 789999988764321 111224689999998864
No 166
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.92 E-value=9.4e-09 Score=93.72 Aligned_cols=151 Identities=13% Similarity=0.101 Sum_probs=81.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|++||||||+++++. +.+.. +.+.+...+. ....+.. . ..
T Consensus 2 ki~v~G~~~~GKTsli~~~~------~~~~~----~~~~~t~~~~-------~~~~~~~--~----------------~~ 46 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFV------QGHFV----DDYDPTIEDS-------YRKQIEI--D----------------GE 46 (164)
T ss_pred EEEEECCCCCCHHHHHHHHH------hCcCC----cccCCchhhh-------EEEEEEE--C----------------CE
Confidence 48999999999999999998 32211 1111110000 0000000 0 01
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHh---c--cCCeeEEEEeCccCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK---Q--SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~---~--~~~i~~vVltK~D~~~ 254 (494)
.+.+.++||||...... +.. ......+.+++|.|++....... ....+. . ..|+ .+|.||+|...
T Consensus 47 ~~~l~i~Dt~g~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-i~v~nK~Dl~~ 119 (164)
T smart00173 47 VCLLDILDTAGQEEFSA-MRD-----QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPI-VLVGNKCDLES 119 (164)
T ss_pred EEEEEEEECCCcccchH-HHH-----HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccccc
Confidence 35677999999754321 111 11235788999999875432111 111111 1 2344 88999999854
Q ss_pred CccchhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
......... +.+ ..+. .+...+|+..|.| ++.+++.+.+.+
T Consensus 120 ~~~~~~~~~-------------~~~~~~~~--~~~~~~Sa~~~~~-i~~l~~~l~~~~ 161 (164)
T smart00173 120 ERVVSTEEG-------------KELARQWG--CPFLETSAKERVN-VDEAFYDLVREI 161 (164)
T ss_pred cceEcHHHH-------------HHHHHHcC--CEEEEeecCCCCC-HHHHHHHHHHHH
Confidence 321111111 011 1111 2446789999999 999998887654
No 167
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.92 E-value=1.7e-08 Score=91.65 Aligned_cols=148 Identities=20% Similarity=0.162 Sum_probs=83.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhccC
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~~ 183 (494)
|+++|.+||||||+++++. +.+.. .+.+ ..++.+.. +...+
T Consensus 2 i~iiG~~~~GKssli~~~~------~~~~~-----~~~~-----------t~~~~~~~-----------------~~~~~ 42 (158)
T cd00878 2 ILILGLDGAGKTTILYKLK------LGEVV-----TTIP-----------TIGFNVET-----------------VEYKN 42 (158)
T ss_pred EEEEcCCCCCHHHHHHHHh------cCCCC-----CCCC-----------CcCcceEE-----------------EEECC
Confidence 7899999999999999999 54411 1111 01111100 00125
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhc-----cCCeeEEEEeCccCCCC
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ-----SVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~-----~~~i~~vVltK~D~~~~ 255 (494)
+++.|+||||...... +.. .....+|.+++|+|++....... ....+.. ..++ .+|.||+|....
T Consensus 43 ~~~~i~D~~G~~~~~~-~~~-----~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~pi-iiv~nK~D~~~~ 115 (158)
T cd00878 43 VSFTVWDVGGQDKIRP-LWK-----HYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPL-LIFANKQDLPGA 115 (158)
T ss_pred EEEEEEECCCChhhHH-HHH-----HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcE-EEEeeccCCccc
Confidence 6889999999764322 111 12235799999999986532211 1121111 2344 889999998653
Q ss_pred ccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHH
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~ 309 (494)
. ....+....+.+. ......+...+|+..|.| ++.+++.+.+
T Consensus 116 ~-~~~~~~~~~~~~~----------~~~~~~~~~~~Sa~~~~g-v~~~~~~l~~ 157 (158)
T cd00878 116 L-SVSELIEKLGLEK----------ILGRRWHIQPCSAVTGDG-LDEGLDWLLQ 157 (158)
T ss_pred c-CHHHHHHhhChhh----------ccCCcEEEEEeeCCCCCC-HHHHHHHHhh
Confidence 2 1111221111100 011233556789999999 9999888754
No 168
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.91 E-value=6.6e-08 Score=96.90 Aligned_cols=215 Identities=17% Similarity=0.183 Sum_probs=103.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchh-HHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-FDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a-~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
+.|+++|.+|+|||||+++|......- .+..-|..-.....+ .+. .......++.+.... ..+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i-~~~g~v~~~~~~~~t~~D~-~~~e~~rg~si~~~~-------------~~~~ 67 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAI-REAGAVKARKSRKHATSDW-MEIEKQRGISVTSSV-------------MQFE 67 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCc-ccCceecccccCCCccCCC-cHHHHhCCCCeEEEE-------------EEEe
Confidence 569999999999999999998542210 011111100000000 000 001111122111100 0112
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH--HHHHHHh-ccCCeeEEEEeCccCCCCc-
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAFK-QSVSVGAVIVTKMDGHAKG- 256 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~--~~~~~f~-~~~~i~~vVltK~D~~~~~- 256 (494)
..++.+.|+||||......... .....+|.+++|+|++.+.... ...+... ...|+ .+++||+|.....
T Consensus 68 ~~~~~i~liDTPG~~df~~~~~------~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~-iivvNK~D~~~a~~ 140 (267)
T cd04169 68 YRDCVINLLDTPGHEDFSEDTY------RTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPI-ITFINKLDREGRDP 140 (267)
T ss_pred eCCEEEEEEECCCchHHHHHHH------HHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCE-EEEEECCccCCCCH
Confidence 2478899999999754322221 1223579999999998764322 1222211 23454 8899999975432
Q ss_pred cchh-HHHHhcCCCeEEe----ccccccc---cccccCccchhhcccCC-----CC-chHHHHHHHHhCCCCCchHHHhh
Q 011076 257 GGAL-SAVAATKSPVIFI----GTGEHMD---EFEVFDVKPFVSRLLGM-----GD-WSGFMDKIHEVVPMDQQPELLQK 322 (494)
Q Consensus 257 g~~l-s~~~~~g~Pi~fi----~~Ge~i~---~l~~f~p~~~vs~~~G~-----Gd-i~~L~e~i~~~~~~~~~~~~~~~ 322 (494)
...+ .+....+.|+..+ +.|+.+. |+-......+.. -.|. -+ ..++.|.+.+. -.++.++
T Consensus 141 ~~~~~~l~~~l~~~~~~~~~Pi~~~~~~~g~vd~~~~~a~~~~~-~~~~~~~~~~~~p~~~~e~~~e~-----~~~l~e~ 214 (267)
T cd04169 141 LELLDEIEEELGIDCTPLTWPIGMGKDFKGVYDRRTGEVELYDR-GAGGATIAPEETKGLDDPKLDEL-----GGDLAEQ 214 (267)
T ss_pred HHHHHHHHHHHCCCceeEEecccCCCceEEEEEhhhCEEEEecC-CCCCccceeccCCcccHHHHHhc-----CHHHHHH
Confidence 1223 3334456554333 3344332 221111111100 0010 00 12333444332 2568888
Q ss_pred hhcc-hhhHHHHHHHHHHHhccC
Q 011076 323 LSEG-NFTLRIMYEQFQNILKMG 344 (494)
Q Consensus 323 ~~~~-~f~~~d~~~ql~~~~~~g 344 (494)
...+ +++.+++.+.+..-..-|
T Consensus 215 ~~e~~~~~~~~~~~~~~~~~~~~ 237 (267)
T cd04169 215 LREELELLEGAGPEFDQEAFLAG 237 (267)
T ss_pred HhCCCccchhhhHHHhHHHHHcC
Confidence 8887 788888777777644444
No 169
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.91 E-value=7.7e-09 Score=93.88 Aligned_cols=153 Identities=18% Similarity=0.147 Sum_probs=82.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|++||||||++++|. +.+.... . .+ . .+..++...-. ....
T Consensus 2 ki~liG~~~~GKSsli~~l~------~~~~~~~-~---~~--------~---~~~~~~~~~~~-------------~~~~ 47 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFM------YDTFDNQ-Y---QA--------T---IGIDFLSKTMY-------------LEDK 47 (161)
T ss_pred EEEEECCCCCCHHHHHHHHH------cCCCCcc-C---CC--------c---eeeeEEEEEEE-------------ECCE
Confidence 48999999999999999998 5443221 1 11 0 01111000000 0001
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHHhccC---CeeEEEEeCccCCCCc
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQSV---SVGAVIVTKMDGHAKG 256 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f~~~~---~i~~vVltK~D~~~~~ 256 (494)
.+.+.++||||...... + . ......++.+++|.|++..... ......+.... .+..+|+||+|.....
T Consensus 48 ~~~l~~~D~~G~~~~~~-~---~--~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~ 121 (161)
T cd01861 48 TVRLQLWDTAGQERFRS-L---I--PSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKR 121 (161)
T ss_pred EEEEEEEECCCcHHHHH-H---H--HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccC
Confidence 34678999999643221 1 1 1123467899999999754322 12222332221 2348999999984332
Q ss_pred cchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 257 g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
........ ...... ..+...+|+..|.| ++.+++.+.+.
T Consensus 122 ~~~~~~~~------------~~~~~~--~~~~~~~Sa~~~~~-v~~l~~~i~~~ 160 (161)
T cd01861 122 QVSTEEGE------------KKAKEL--NAMFIETSAKAGHN-VKELFRKIASA 160 (161)
T ss_pred ccCHHHHH------------HHHHHh--CCEEEEEeCCCCCC-HHHHHHHHHHh
Confidence 11111111 000111 13345689999999 99999988764
No 170
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.91 E-value=2e-08 Score=93.41 Aligned_cols=150 Identities=18% Similarity=0.147 Sum_probs=81.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|++||||||++++|.. |..+ .. .| . .+..+.. +..
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~-----~~~~---~~---~~------t-----~~~~~~~-----------------~~~ 56 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLL-----GEVV---HT---SP------T-----IGSNVEE-----------------IVY 56 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHcc-----CCCC---Cc---CC------c-----cccceEE-----------------EEE
Confidence 4589999999999999999972 2211 01 01 0 0000000 001
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHH-hc----cCCeeEEEEeCccCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAF-KQ----SVSVGAVIVTKMDGH 253 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f-~~----~~~i~~vVltK~D~~ 253 (494)
++..+.++||||........ . .....+|.+++|+|++...... .....+ .. ..| ..+|+||+|..
T Consensus 57 ~~~~~~l~D~~G~~~~~~~~----~--~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p-~viv~NK~Dl~ 129 (174)
T cd04153 57 KNIRFLMWDIGGQESLRSSW----N--TYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAV-LLVLANKQDLK 129 (174)
T ss_pred CCeEEEEEECCCCHHHHHHH----H--HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCC-EEEEEECCCCC
Confidence 24678999999975322111 1 1123689999999998643211 112222 11 134 48999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHH
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~ 309 (494)
.... .-.+....+. +..... ..+...+|+..|.| ++++++.+.+
T Consensus 130 ~~~~-~~~i~~~l~~--------~~~~~~--~~~~~~~SA~~g~g-i~e~~~~l~~ 173 (174)
T cd04153 130 GAMT-PAEISESLGL--------TSIRDH--TWHIQGCCALTGEG-LPEGLDWIAS 173 (174)
T ss_pred CCCC-HHHHHHHhCc--------ccccCC--ceEEEecccCCCCC-HHHHHHHHhc
Confidence 4211 1111221111 001111 11346789999999 9999888753
No 171
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=98.91 E-value=1.4e-08 Score=106.90 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=38.3
Q ss_pred CCCCeEEEEEcC-CCCcHHHHHHHHHHHHHhcCCceEEEEc-ccCcc
Q 011076 98 KGKPSVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCA-DTFRA 142 (494)
Q Consensus 98 ~~~~~vI~lvG~-~GvGKTTl~~kLA~~l~~~g~kVaiVs~-D~~r~ 142 (494)
..++.+|+|+.. .||||||++.+||.+|+.+|+||++||+ |++..
T Consensus 103 ~~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~n 149 (387)
T PHA02519 103 DKNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGT 149 (387)
T ss_pred CCCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCCC
Confidence 344678888754 5999999999999999999999999996 98654
No 172
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.90 E-value=1.1e-08 Score=100.52 Aligned_cols=86 Identities=22% Similarity=0.347 Sum_probs=50.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|+|||||||+++.|+ |.+..+ .. .++++..-.+ +... ..
T Consensus 2 ~v~lvG~~~~GKStLl~~Lt------g~~~~v-~~-----------~~~tT~~~~~--g~~~----------------~~ 45 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLT------NTKSEV-AA-----------YEFTTLTCVP--GVLE----------------YK 45 (233)
T ss_pred EEEEECCCCCCHHHHHHHHH------CCCccc-cC-----------CCCccccceE--EEEE----------------EC
Confidence 48899999999999999999 654321 11 1112211111 1000 12
Q ss_pred CCcEEEEeCCCCCchhH---HHHHHHHHHHHhcCCCEEEEEecCCCc
Q 011076 183 NCDLIIVDTSGRHKQEA---ALFEEMRQVSEATNPDLVIFVMDSSIG 226 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~---~l~~el~~i~~~~~~d~vllVvDa~~g 226 (494)
+.++.++||||...... ...... +.....+|.+++|+|++..
T Consensus 46 ~~~i~l~DtpG~~~~~~~~~~~~~~~--l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 46 GAKIQLLDLPGIIEGAADGKGRGRQV--IAVARTADLILMVLDATKP 90 (233)
T ss_pred CeEEEEEECCCcccccccchhHHHHH--HHhhccCCEEEEEecCCcc
Confidence 56778999999753321 111111 2234468999999998754
No 173
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.90 E-value=2.4e-08 Score=90.16 Aligned_cols=159 Identities=21% Similarity=0.222 Sum_probs=82.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCC-ceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQKKGW-KPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~~~g~-kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
|+++|.+||||||+++.|+ +. ...-++.. ...+. .+.++. .
T Consensus 2 i~l~G~~g~GKTtL~~~l~------~~~~~~~~~~~-----------~~~t~-~~~~~~--------------------~ 43 (170)
T cd01876 2 IAFAGRSNVGKSSLINALT------NRKKLARTSKT-----------PGKTQ-LINFFN--------------------V 43 (170)
T ss_pred EEEEcCCCCCHHHHHHHHh------cCCceeeecCC-----------CCcce-eEEEEE--------------------c
Confidence 7899999999999999998 32 11112210 00111 111111 0
Q ss_pred CCcEEEEeCCCCCch------hHHHHHHHHHHHHhc-CCCEEEEEecCCCccc-H-HHHHHHHhccCCeeEEEEeCccCC
Q 011076 183 NCDLIIVDTSGRHKQ------EAALFEEMRQVSEAT-NPDLVIFVMDSSIGQA-A-FDQAQAFKQSVSVGAVIVTKMDGH 253 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~------~~~l~~el~~i~~~~-~~d~vllVvDa~~g~~-~-~~~~~~f~~~~~i~~vVltK~D~~ 253 (494)
...+.++||||.... .......+....... ..+.+++|+|...... . ....+.+...-.+..+|+||+|..
T Consensus 44 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~ 123 (170)
T cd01876 44 NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKL 123 (170)
T ss_pred cCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 227799999997542 111111111222221 3467888998875422 1 222333332222338899999985
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
... .......... ..+.......+..++|++.+.| +..+++.+.+.+
T Consensus 124 ~~~-~~~~~~~~~~---------~~l~~~~~~~~~~~~Sa~~~~~-~~~l~~~l~~~~ 170 (170)
T cd01876 124 KKS-ELAKALKEIK---------KELKLFEIDPPIILFSSLKGQG-IDELRALIEKWL 170 (170)
T ss_pred ChH-HHHHHHHHHH---------HHHHhccCCCceEEEecCCCCC-HHHHHHHHHHhC
Confidence 432 1111111000 1111012223445789999998 999999887653
No 174
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.90 E-value=9.4e-09 Score=98.07 Aligned_cols=117 Identities=12% Similarity=0.107 Sum_probs=62.9
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhccCCeeEEEEeCccCCCCcc------
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGG------ 257 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~~i~~vVltK~D~~~~~g------ 257 (494)
.++.++||||.........+.+.. ......|.+++|.|.............+.+.-....+|+||+|......
T Consensus 52 ~~l~l~DtpG~~~~~~~~~~~l~~-~~~~~~d~~l~v~~~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~ 130 (197)
T cd04104 52 PNVTLWDLPGIGSTAFPPDDYLEE-MKFSEYDFFIIISSTRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPR 130 (197)
T ss_pred CCceEEeCCCCCcccCCHHHHHHH-hCccCcCEEEEEeCCCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccc
Confidence 478999999986432111111211 2234578888887665433333334444332223389999999854321
Q ss_pred -----chhHHHHhcCCCeEEecccccccc-c----cccCccchhhcc--cCCCCchHHHHHHHHhCCCC
Q 011076 258 -----GALSAVAATKSPVIFIGTGEHMDE-F----EVFDVKPFVSRL--LGMGDWSGFMDKIHEVVPMD 314 (494)
Q Consensus 258 -----~~ls~~~~~g~Pi~fi~~Ge~i~~-l----~~f~p~~~vs~~--~G~Gdi~~L~e~i~~~~~~~ 314 (494)
..+.... +.+.. + .++.+.+.+|+. .+.+ +..|.+.+...+++.
T Consensus 131 ~~~~~~~l~~i~------------~~~~~~~~~~~~~~p~v~~vS~~~~~~~~-~~~l~~~~~~~l~~~ 186 (197)
T cd04104 131 SFNREQVLQEIR------------DNCLENLQEAGVSEPPVFLVSNFDPSDYD-FPKLRETLLKDLPAH 186 (197)
T ss_pred cccHHHHHHHHH------------HHHHHHHHHcCCCCCCEEEEeCCChhhcC-hHHHHHHHHHHhhHH
Confidence 1111111 11111 1 123345556766 4565 999999999988743
No 175
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.90 E-value=1.3e-08 Score=97.51 Aligned_cols=113 Identities=16% Similarity=0.152 Sum_probs=65.9
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCc---ccHHHHHHHHh-ccCCeeEEEEeCccCCCCccch
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG---QAAFDQAQAFK-QSVSVGAVIVTKMDGHAKGGGA 259 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g---~~~~~~~~~f~-~~~~i~~vVltK~D~~~~~g~~ 259 (494)
..+.|+||||.. .+...+ +..+...|.+++|+|+..+ ....+.+..+. ...+...+|+||+|...... .
T Consensus 83 ~~i~~iDtPG~~----~~~~~~--~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~-~ 155 (203)
T cd01888 83 RHVSFVDCPGHE----ILMATM--LSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQ-A 155 (203)
T ss_pred cEEEEEECCChH----HHHHHH--HHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHH-H
Confidence 678999999953 233332 2334467999999999863 22233333222 22333478999999864311 1
Q ss_pred hHHHHhcCCCeEEeccccccccc-cccCccchhhcccCCCCchHHHHHHHHhCCC
Q 011076 260 LSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (494)
Q Consensus 260 ls~~~~~g~Pi~fi~~Ge~i~~l-~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~ 313 (494)
........ +.+... ....+..++|++.|.| ++.|++.+.+.+++
T Consensus 156 ~~~~~~i~---------~~~~~~~~~~~~i~~vSA~~g~g-i~~L~~~l~~~l~~ 200 (203)
T cd01888 156 LENYEQIK---------KFVKGTIAENAPIIPISAQLKYN-IDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHH---------HHHhccccCCCcEEEEeCCCCCC-HHHHHHHHHHhCCC
Confidence 11111000 011111 1234567899999999 99999999988754
No 176
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=98.89 E-value=7.6e-09 Score=103.02 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=36.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~ 142 (494)
++|+++|..||||||++.+||..|++.| +|++||+|++..
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~ 42 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKAD 42 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCC-EEEEEeEccCcc
Confidence 5788889999999999999999999999 999999998753
No 177
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.89 E-value=2.5e-08 Score=93.63 Aligned_cols=162 Identities=15% Similarity=0.132 Sum_probs=83.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|++||||||+++.+. +.+...... +.++ +...+.
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~------~~~~~~~~~-T~~~----------~~~~i~---------------------- 59 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLK------DDRLAQHVP-TLHP----------TSEELT---------------------- 59 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHh------cCCCcccCC-ccCc----------ceEEEE----------------------
Confidence 3458999999999999999998 433211100 0000 000000
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc---HHHHHHHHhc-----cCCeeEEEEeCccC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ-----SVSVGAVIVTKMDG 252 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~---~~~~~~~f~~-----~~~i~~vVltK~D~ 252 (494)
..+.++.++||||...... + .......++.+++|+|++.... .......+.. ..|+ .+|.||+|.
T Consensus 60 ~~~~~~~l~D~~G~~~~~~-----~-~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pv-ivv~NK~Dl 132 (190)
T cd00879 60 IGNIKFKTFDLGGHEQARR-----L-WKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPF-LILGNKIDL 132 (190)
T ss_pred ECCEEEEEEECCCCHHHHH-----H-HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCE-EEEEeCCCC
Confidence 1246788999999653221 1 1122346789999999874321 1112222211 1344 889999997
Q ss_pred CCCccchhHHHHhcCCCeEEecccccccccc-ccCccchhhcccCCCCchHHHHHHHHh
Q 011076 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 253 ~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~-~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
.... ..-.+....+.+-...+-+....+.. ...+....|+..|.| ++++++.+.+.
T Consensus 133 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-v~e~~~~l~~~ 189 (190)
T cd00879 133 PGAV-SEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQG-YGEAFRWLSQY 189 (190)
T ss_pred CCCc-CHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCC-hHHHHHHHHhh
Confidence 4321 11112221221110000000010011 111345689999999 99999988654
No 178
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.89 E-value=1.1e-08 Score=91.41 Aligned_cols=150 Identities=17% Similarity=0.093 Sum_probs=80.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|++||||||+++++. +.+..-... + ..+..+....... ...
T Consensus 2 ~i~~~G~~~~GKStl~~~l~------~~~~~~~~~----~-----------t~~~~~~~~~~~~-------------~~~ 47 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFV------DGKFDENYK----S-----------TIGVDFKSKTIEI-------------DGK 47 (159)
T ss_pred eEEEECCCCCCHHHHHHHHH------hCcCCCccC----C-----------ceeeeeEEEEEEE-------------CCE
Confidence 38999999999999999997 332221110 0 0011111100000 012
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHHhccC---CeeEEEEeCccCC-CC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQSV---SVGAVIVTKMDGH-AK 255 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f~~~~---~i~~vVltK~D~~-~~ 255 (494)
.+++.++||||...... .. ......+|.+++|+|++..... ......+.... .+..+|+||+|.. ..
T Consensus 48 ~~~~~l~D~~g~~~~~~----~~--~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 121 (159)
T cd00154 48 TVKLQIWDTAGQERFRS----IT--PSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQR 121 (159)
T ss_pred EEEEEEEecCChHHHHH----HH--HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccc
Confidence 46789999999743221 11 1223468999999999753211 11222232221 3348999999985 22
Q ss_pred ccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHH
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIH 308 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~ 308 (494)
......... +.. ....+...+|+..|.| ++.+++.+.
T Consensus 122 ~~~~~~~~~--------------~~~-~~~~~~~~~sa~~~~~-i~~~~~~i~ 158 (159)
T cd00154 122 QVSTEEAQQ--------------FAK-ENGLLFFETSAKTGEN-VEELFQSLA 158 (159)
T ss_pred cccHHHHHH--------------HHH-HcCCeEEEEecCCCCC-HHHHHHHHh
Confidence 111111110 000 1123456788888888 888887764
No 179
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=98.89 E-value=2.3e-08 Score=99.12 Aligned_cols=43 Identities=28% Similarity=0.236 Sum_probs=37.0
Q ss_pred CeEEEEEcCC-CCcHHHHHHHHHHHHH-hcCCceEEEEcccCcch
Q 011076 101 PSVIMFVGLQ-GSGKTTTCTKYAYYHQ-KKGWKPALVCADTFRAG 143 (494)
Q Consensus 101 ~~vI~lvG~~-GvGKTTl~~kLA~~l~-~~g~kVaiVs~D~~r~~ 143 (494)
+.+|.|+... ||||||++.+||.+|+ ..|+||++||.|++...
T Consensus 2 ~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s~ 46 (259)
T COG1192 2 MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGSL 46 (259)
T ss_pred CEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcchh
Confidence 4678888765 9999999999999999 55699999999998543
No 180
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.88 E-value=2.1e-08 Score=92.72 Aligned_cols=152 Identities=18% Similarity=0.118 Sum_probs=82.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhccC
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~~ 183 (494)
|+++|.+||||||++++|. +... . .+.| | .+..+.. . ...+
T Consensus 2 vvlvG~~~~GKTsl~~~l~------~~~~--~---~~~~----------T-~~~~~~~-~----------------~~~~ 42 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLK------QDEF--M---QPIP----------T-IGFNVET-V----------------EYKN 42 (169)
T ss_pred EEEECCCCCCHHHHHHHHh------cCCC--C---CcCC----------c-CceeEEE-E----------------EECC
Confidence 7899999999999999998 3211 0 0111 0 1111110 0 0125
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHHhc-----cCCeeEEEEeCccCCCC
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ-----SVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~~-----~~~i~~vVltK~D~~~~ 255 (494)
+.+.++||||........ ......+|.+++|+|++...... .....+.. ..+ ..+|.||.|...+
T Consensus 43 ~~i~l~Dt~G~~~~~~~~------~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 115 (169)
T cd04158 43 LKFTIWDVGGKHKLRPLW------KHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDAL-LLIFANKQDVAGA 115 (169)
T ss_pred EEEEEEECCCChhcchHH------HHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCC-EEEEEeCcCcccC
Confidence 678999999975432111 11234679999999987542211 11222211 133 4889999998533
Q ss_pred ccchhHHHHhcCCCeEEeccccccccccccC--ccchhhcccCCCCchHHHHHHHHhCCCC
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFD--VKPFVSRLLGMGDWSGFMDKIHEVVPMD 314 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~--p~~~vs~~~G~Gdi~~L~e~i~~~~~~~ 314 (494)
.. .-.+.... ...++.... +...+|++.|.| ++++++++.+.+.+.
T Consensus 116 ~~-~~~~~~~~-----------~~~~~~~~~~~~~~~~Sa~~g~g-v~~~f~~l~~~~~~~ 163 (169)
T cd04158 116 LS-VEEMTELL-----------SLHKLCCGRSWYIQGCDARSGMG-LYEGLDWLSRQLVAA 163 (169)
T ss_pred CC-HHHHHHHh-----------CCccccCCCcEEEEeCcCCCCCC-HHHHHHHHHHHHhhc
Confidence 11 01111100 001111111 223469999999 999999998766443
No 181
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.88 E-value=1.6e-08 Score=91.99 Aligned_cols=154 Identities=16% Similarity=0.109 Sum_probs=81.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|.+||||||++++|+ +.+.. +.+.+ ..++.+...... ....
T Consensus 2 ki~~vG~~~vGKTsli~~l~------~~~~~----~~~~~-----------t~~~~~~~~~~~-------------~~~~ 47 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYC------EGRFV----SKYLP-----------TIGIDYGVKKVS-------------VRNK 47 (168)
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCCC----CCCCC-----------ccceeEEEEEEE-------------ECCe
Confidence 48999999999999999998 43321 01111 011111000000 0012
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc---HHHHHHHHhc--------cCCeeEEEEeCcc
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ--------SVSVGAVIVTKMD 251 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~---~~~~~~~f~~--------~~~i~~vVltK~D 251 (494)
.+.+.|+||||..... .+. -.....++.+++|+|.+.... .......+.. .-.+..+|.||.|
T Consensus 48 ~~~l~i~Dt~G~~~~~-----~~~-~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 121 (168)
T cd04119 48 EVRVNFFDLSGHPEYL-----EVR-NEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121 (168)
T ss_pred EEEEEEEECCccHHHH-----HHH-HHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchh
Confidence 4678899999984322 111 112346899999999875322 1112222211 1123489999999
Q ss_pred CCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 252 GHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 252 ~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
............. +...+.. .+...+|+..|.| ++.+++.+.+.+
T Consensus 122 l~~~~~~~~~~~~------------~~~~~~~--~~~~~~Sa~~~~g-i~~l~~~l~~~l 166 (168)
T cd04119 122 LTKHRAVSEDEGR------------LWAESKG--FKYFETSACTGEG-VNEMFQTLFSSI 166 (168)
T ss_pred cccccccCHHHHH------------HHHHHcC--CeEEEEECCCCCC-HHHHHHHHHHHH
Confidence 8632111111110 0001111 2345689999999 999999886543
No 182
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=98.88 E-value=1.2e-08 Score=99.79 Aligned_cols=93 Identities=22% Similarity=0.297 Sum_probs=51.5
Q ss_pred EEEE-EcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHH---hhhhccCccee--cc--CC-------CCC
Q 011076 103 VIMF-VGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK---QNATKAKIPFY--GS--YT-------ESD 167 (494)
Q Consensus 103 vI~l-vG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk---~~~~~~~i~~~--~~--~~-------~~d 167 (494)
+|++ -|..||||||++.+||..|++.|+||.+++.|.+.+..-..+. .+..+.++++. .. .. ..+
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~~r~l~nr~~~~~~~gi~Lp~p~~~~L~~~~~~v~~~~ 81 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSLPRYLENRAAWAQRDGIELPVPSHFFLPPDQASVWEGE 81 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HHHHHHHHHHHHHHHHT------EEE-SSSHHHHTTS-H
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCHHHHHhccchhHHhcCcccCCccceeecccccccccCc
Confidence 3444 3788999999999999999999999999999998776532222 12222233221 11 11 111
Q ss_pred hHH--HHHHHHHHHhccCCcEEEEeCCCCCc
Q 011076 168 PVR--IAVEGVETFKKENCDLIIVDTSGRHK 196 (494)
Q Consensus 168 p~~--i~~~~l~~~~~~~~dvIIIDTaG~~~ 196 (494)
+.. ...+++..+. .++||+||||||.+.
T Consensus 82 ~~~~~~L~q~l~~l~-~~~DfLVID~PGtd~ 111 (261)
T PF09140_consen 82 NVEDKRLEQALADLE-GDLDFLVIDTPGTDD 111 (261)
T ss_dssp HHHHHHHHHHHHHHH-HH-SEEEEEE-SSS-
T ss_pred chhHHHHHHHHHHHh-cCCCEEEEeCCCCCc
Confidence 111 2334454544 589999999999864
No 183
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.88 E-value=1e-08 Score=93.97 Aligned_cols=107 Identities=16% Similarity=0.066 Sum_probs=59.5
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHH---HHHHhc--------cCCeeEEEEeCccC
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ---AQAFKQ--------SVSVGAVIVTKMDG 252 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~---~~~f~~--------~~~i~~vVltK~D~ 252 (494)
+.+.++||||..... .+ .......+|.+++|+|+...+..... ...+.. ..|+ .+|+||+|.
T Consensus 49 ~~~~~~D~~g~~~~~-~~-----~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl 121 (172)
T cd01862 49 VTLQIWDTAGQERFQ-SL-----GVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPF-VVLGNKIDL 121 (172)
T ss_pred EEEEEEeCCChHHHH-hH-----HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceE-EEEEECccc
Confidence 456799999964321 11 11223468999999998764422111 111111 2344 889999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 253 ~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
............ .......+.+...+|+..|.| ++.+++.+.+.+
T Consensus 122 ~~~~~~~~~~~~-------------~~~~~~~~~~~~~~Sa~~~~g-v~~l~~~i~~~~ 166 (172)
T cd01862 122 EEKRQVSTKKAQ-------------QWCQSNGNIPYFETSAKEAIN-VEQAFETIARKA 166 (172)
T ss_pred ccccccCHHHHH-------------HHHHHcCCceEEEEECCCCCC-HHHHHHHHHHHH
Confidence 632111111110 010011134556789999999 999999887654
No 184
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.88 E-value=1.2e-08 Score=92.72 Aligned_cols=153 Identities=14% Similarity=0.134 Sum_probs=82.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|++||||||+++.|. +.+..- .+.+ . .+..+...... ....
T Consensus 3 ki~v~G~~~~GKSsli~~l~------~~~~~~----~~~~------t-----~~~~~~~~~v~-------------~~~~ 48 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFV------KNEFSE----NQES------T-----IGAAFLTQTVN-------------LDDT 48 (163)
T ss_pred EEEEECCCCCCHHHHHHHHH------cCCCCC----CCCC------c-----cceeEEEEEEE-------------ECCE
Confidence 58999999999999999998 433211 0111 0 01000000000 0012
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHHhcc----CCeeEEEEeCccCCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQS----VSVGAVIVTKMDGHAK 255 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f~~~----~~i~~vVltK~D~~~~ 255 (494)
.+.+.|+||||..... .+. ......+|.+++|+|++..... ......+... .++ .+|.||+|....
T Consensus 49 ~~~~~i~D~~G~~~~~-----~~~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i-ivv~nK~D~~~~ 121 (163)
T cd01860 49 TVKFEIWDTAGQERYR-----SLA-PMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIII-ALVGNKADLESK 121 (163)
T ss_pred EEEEEEEeCCchHHHH-----HHH-HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeE-EEEEECcccccc
Confidence 4567899999964211 111 1223468999999999854322 1122222221 334 789999997532
Q ss_pred ccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
...-..... ....... .+...+|+..|.| +..+++.+.+.+
T Consensus 122 ~~~~~~~~~------------~~~~~~~--~~~~~~Sa~~~~~-v~~l~~~l~~~l 162 (163)
T cd01860 122 RQVSTEEAQ------------EYADENG--LLFFETSAKTGEN-VNELFTEIAKKL 162 (163)
T ss_pred CcCCHHHHH------------HHHHHcC--CEEEEEECCCCCC-HHHHHHHHHHHh
Confidence 111111110 0001111 2346689999999 999999987764
No 185
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.88 E-value=1.1e-08 Score=93.66 Aligned_cols=153 Identities=16% Similarity=0.109 Sum_probs=81.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|++||||||+++.+. +.+... .+.+ ..++.+...... ....
T Consensus 4 ki~i~G~~~vGKSsli~~~~------~~~~~~----~~~~-----------t~~~~~~~~~~~-------------~~~~ 49 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFA------DDTYTE----SYIS-----------TIGVDFKIRTIE-------------LDGK 49 (166)
T ss_pred EEEEECCCCCCHHHHHHHHh------cCCCCC----CCCC-----------ccceeEEEEEEE-------------ECCE
Confidence 58999999999999999998 322110 1111 011111100000 0002
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHh----ccCCeeEEEEeCccCCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK----QSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~----~~~~i~~vVltK~D~~~~ 255 (494)
.+.+-|+||||..... .+. -.....+|.+++|+|++......+ ....+. ...++ .+|.||+|....
T Consensus 50 ~~~~~i~D~~G~~~~~-----~~~-~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~-iiv~nK~Dl~~~ 122 (166)
T cd01869 50 TIKLQIWDTAGQERFR-----TIT-SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNK-LLVGNKCDLTDK 122 (166)
T ss_pred EEEEEEEECCCcHhHH-----HHH-HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcE-EEEEEChhcccc
Confidence 3567899999964321 111 112346899999999975432211 122221 12344 889999997543
Q ss_pred ccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
......... .... ....+...+|+..|.| +..+++.+.+.+
T Consensus 123 ~~~~~~~~~-------------~~~~-~~~~~~~~~Sa~~~~~-v~~~~~~i~~~~ 163 (166)
T cd01869 123 RVVDYSEAQ-------------EFAD-ELGIPFLETSAKNATN-VEQAFMTMAREI 163 (166)
T ss_pred cCCCHHHHH-------------HHHH-HcCCeEEEEECCCCcC-HHHHHHHHHHHH
Confidence 211111110 0000 0112456689999999 999988876643
No 186
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.87 E-value=2.1e-08 Score=91.35 Aligned_cols=107 Identities=17% Similarity=0.120 Sum_probs=60.8
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHH-HHhc----cCCeeEEEEeCccCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQ-AFKQ----SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~-~f~~----~~~i~~vVltK~D~~~ 254 (494)
+..+.|+||||...... + .......++.+++|+|++..... ..... .+.. ..|+ .+|+||+|...
T Consensus 42 ~~~~~i~Dt~G~~~~~~-----~-~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-iiv~nK~Dl~~ 114 (158)
T cd04151 42 NLKFQVWDLGGQTSIRP-----Y-WRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVL-LVFANKQDMPG 114 (158)
T ss_pred CEEEEEEECCCCHHHHH-----H-HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcE-EEEEeCCCCCC
Confidence 46789999999864321 1 11223468999999998753221 11111 1121 2344 99999999853
Q ss_pred CccchhHHHHhcCCCeEEeccccccccc-cccCccchhhcccCCCCchHHHHHHHH
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l-~~f~p~~~vs~~~G~Gdi~~L~e~i~~ 309 (494)
.. ....+....+. ..+ ....+...+|+..|.| ++.+++++.+
T Consensus 115 ~~-~~~~i~~~~~~-----------~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~ 157 (158)
T cd04151 115 AL-SEAEISEKLGL-----------SELKDRTWSIFKTSAIKGEG-LDEGMDWLVN 157 (158)
T ss_pred CC-CHHHHHHHhCc-----------cccCCCcEEEEEeeccCCCC-HHHHHHHHhc
Confidence 31 11112211110 000 1112457799999999 9999988754
No 187
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.87 E-value=1.2e-08 Score=92.70 Aligned_cols=153 Identities=14% Similarity=0.149 Sum_probs=82.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|++||||||+++++. +.+. +. .+.+ ..+..+....... ...
T Consensus 2 kv~v~G~~~~GKTtli~~l~------~~~~---~~-~~~~-----------~~~~~~~~~~~~~-------------~~~ 47 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFT------DGKF---SE-QYKS-----------TIGVDFKTKTIEV-------------DGK 47 (164)
T ss_pred EEEEECCCCCCHHHHHHHHh------cCCC---CC-CCCC-----------ceeeEEEEEEEEE-------------CCE
Confidence 48999999999999999998 4332 10 0111 0011110000000 001
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHh----ccCCeeEEEEeCccCCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK----QSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~----~~~~i~~vVltK~D~~~~ 255 (494)
.+.+.++||||...... + .......+|.+++|+|++....... ....+. ...|+ .+|.||+|....
T Consensus 48 ~~~~~l~D~~G~~~~~~-----~-~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pi-vvv~nK~D~~~~ 120 (164)
T smart00175 48 RVKLQIWDTAGQERFRS-----I-TSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVI-MLVGNKSDLEDQ 120 (164)
T ss_pred EEEEEEEECCChHHHHH-----H-HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeE-EEEEEchhcccc
Confidence 35678999999643221 1 1122346899999999975432211 112221 12344 899999997542
Q ss_pred ccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
......... +...... .+...+|+..|.| ++.+++.+.+.+
T Consensus 121 ~~~~~~~~~------------~~~~~~~--~~~~e~Sa~~~~~-i~~l~~~i~~~~ 161 (164)
T smart00175 121 RQVSREEAE------------AFAEEHG--LPFFETSAKTNTN-VEEAFEELAREI 161 (164)
T ss_pred cCCCHHHHH------------HHHHHcC--CeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 211111111 0001111 2346688899998 999999887754
No 188
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=98.86 E-value=2.5e-08 Score=95.23 Aligned_cols=161 Identities=19% Similarity=0.203 Sum_probs=91.2
Q ss_pred EEEE-EcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC-c----------------------chhHHHHHhhhhc-cCc
Q 011076 103 VIMF-VGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF-R----------------------AGAFDQLKQNATK-AKI 157 (494)
Q Consensus 103 vI~l-vG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~-r----------------------~~a~~qLk~~~~~-~~i 157 (494)
+|++ .|..||||||+.++|+..|++.|+||++|+.|.. | -+...|--.--++ .+.
T Consensus 4 iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDKr~~nL 83 (272)
T COG2894 4 IIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDKRLENL 83 (272)
T ss_pred EEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhcccceeeeeehhhhcCccchhhHhhccccCCce
Confidence 4444 4999999999999999999999999999999972 1 1111111100111 111
Q ss_pred ceeccCCCCCh----HHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCc--ccHHH
Q 011076 158 PFYGSYTESDP----VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFD 231 (494)
Q Consensus 158 ~~~~~~~~~dp----~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g--~~~~~ 231 (494)
-+.+.....|. .+-....+..++..+|||||+|+|.-.... . ..+...+|+.++|..+... .++.+
T Consensus 84 ~lLPAsQtrdKdalt~E~v~~vv~eL~~~~fDyIi~DsPAGIE~G--~------~~A~~~Ad~AiVVtnPEvSsVRDsDR 155 (272)
T COG2894 84 FLLPASQTRDKDALTPEGVKKVVNELKAMDFDYIIIDSPAGIEQG--F------KNAVYFADEAIVVTNPEVSSVRDSDR 155 (272)
T ss_pred EecccccccCcccCCHHHHHHHHHHHHhcCCCEEEecCcchHHHH--H------HhhhhccceEEEEcCCCccccccchh
Confidence 11121111121 223445566666679999999997543222 1 1233467888888877432 22222
Q ss_pred HH---HHHh-----ccCCeeEEEEeCccC-CCCccchhHHH---HhcCCCeE
Q 011076 232 QA---QAFK-----QSVSVGAVIVTKMDG-HAKGGGALSAV---AATKSPVI 271 (494)
Q Consensus 232 ~~---~~f~-----~~~~i~~vVltK~D~-~~~~g~~ls~~---~~~g~Pi~ 271 (494)
.+ .+.. ..-+...+++|+++- ..+.|..+++- ....+|+.
T Consensus 156 iiGlLesk~~rae~~~~~~~~llvnR~~p~~v~~GeMlsv~Dv~~iL~i~li 207 (272)
T COG2894 156 IIGLLESKSRRAEIGEEPKEHLLLNRYRPEMVKRGEMLSVEDVLEILSIPLI 207 (272)
T ss_pred heeehhcccchhhcCCcccceEEEEccCHHHhccCCcccHHHHHHHhCCceE
Confidence 11 1111 111124899999986 34557777754 34555543
No 189
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.86 E-value=2.5e-08 Score=101.11 Aligned_cols=120 Identities=19% Similarity=0.220 Sum_probs=70.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||++|.|. |.+++.++. |.+ ++..-.. .. ..
T Consensus 38 ~~rIllvGktGVGKSSliNsIl------G~~v~~vs~--f~s---------~t~~~~~-~~-~~---------------- 82 (313)
T TIGR00991 38 SLTILVMGKGGVGKSSTVNSII------GERIATVSA--FQS---------EGLRPMM-VS-RT---------------- 82 (313)
T ss_pred ceEEEEECCCCCCHHHHHHHHh------CCCcccccC--CCC---------cceeEEE-EE-EE----------------
Confidence 4579999999999999999999 988877765 111 0000000 00 00
Q ss_pred ccCCcEEEEeCCCCCchhH---HHHHHHHHHHHhcCCCEEEEEe--cCCCcc-cHHHHHH----HHhcc-CCeeEEEEeC
Q 011076 181 KENCDLIIVDTSGRHKQEA---ALFEEMRQVSEATNPDLVIFVM--DSSIGQ-AAFDQAQ----AFKQS-VSVGAVIVTK 249 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~---~l~~el~~i~~~~~~d~vllVv--Da~~g~-~~~~~~~----~f~~~-~~i~~vVltK 249 (494)
..++.+.||||||...... ...+.+..+.....+|.++||. |..... ......+ .|.+. ....++|+|+
T Consensus 83 ~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh 162 (313)
T TIGR00991 83 RAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTH 162 (313)
T ss_pred ECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEEC
Confidence 1367899999999986431 1112222222233688999994 443222 1122222 33222 2346999999
Q ss_pred ccCCCC
Q 011076 250 MDGHAK 255 (494)
Q Consensus 250 ~D~~~~ 255 (494)
.|....
T Consensus 163 ~d~~~p 168 (313)
T TIGR00991 163 AQFSPP 168 (313)
T ss_pred CccCCC
Confidence 997643
No 190
>PLN03127 Elongation factor Tu; Provisional
Probab=98.86 E-value=2.9e-08 Score=106.31 Aligned_cols=126 Identities=19% Similarity=0.169 Sum_probs=73.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEE--cccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC--ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs--~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~ 178 (494)
...|+++|..++|||||+++|..+..+.|+...+.. .|... +.-+...|..-.. ..
T Consensus 61 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~----~E~~rGiTi~~~~-~~----------------- 118 (447)
T PLN03127 61 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAP----EEKARGITIATAH-VE----------------- 118 (447)
T ss_pred eEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCCh----hHhhcCceeeeeE-EE-----------------
Confidence 455999999999999999999877666555433332 22211 1111222222111 11
Q ss_pred HhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH--HHHHHHHhc-cCCeeEEEEeCccCCC
Q 011076 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 179 ~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~--~~~~~~f~~-~~~i~~vVltK~D~~~ 254 (494)
+..++..++||||||... +...+. ..+..+|.+++|+|+..|... .+.+..... .++...+++||+|...
T Consensus 119 ~~~~~~~i~~iDtPGh~~----f~~~~~--~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 119 YETAKRHYAHVDCPGHAD----YVKNMI--TGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVD 191 (447)
T ss_pred EcCCCeEEEEEECCCccc----hHHHHH--HHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCC
Confidence 111356889999999863 333332 233468999999999866322 222332222 2343367899999864
No 191
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.86 E-value=2.2e-08 Score=91.05 Aligned_cols=151 Identities=15% Similarity=0.127 Sum_probs=80.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|++||||||+++.|. +.+...- +.+ . .+....+..+. .. ..
T Consensus 2 ki~v~G~~~~GKSsli~~l~------~~~~~~~----~~~------~-~~~~~~~~~~~-~~----------------~~ 47 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFT------DDTFDPD----LAA------T-IGVDFKVKTLT-VD----------------GK 47 (161)
T ss_pred EEEEECCCCCCHHHHHHHHH------cCCCCcc----cCC------c-ccceEEEEEEE-EC----------------CE
Confidence 48999999999999999998 3322110 001 0 00000000000 00 12
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHH---HH---HHhc--cCCeeEEEEeCccCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ---AQ---AFKQ--SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~---~~---~f~~--~~~i~~vVltK~D~~~ 254 (494)
.+++.++||||..... .+. ......+|.+++|+|++........ .. .+.. ..+ ..+|.||+|...
T Consensus 48 ~~~~~l~D~~g~~~~~-~~~-----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~-~~iv~nK~D~~~ 120 (161)
T cd01863 48 KVKLAIWDTAGQERFR-TLT-----SSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIV-KMLVGNKIDKEN 120 (161)
T ss_pred EEEEEEEECCCchhhh-hhh-----HHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCc-EEEEEECCcccc
Confidence 4678999999964221 111 1112368999999998754322211 11 2211 123 488999999863
Q ss_pred CccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
.....-.... ...+. -.+...+|+..|.| ++.+++.+.+.
T Consensus 121 ~~~~~~~~~~-------------~~~~~--~~~~~~~Sa~~~~g-i~~~~~~~~~~ 160 (161)
T cd01863 121 REVTREEGLK-------------FARKH--NMLFIETSAKTRDG-VQQAFEELVEK 160 (161)
T ss_pred cccCHHHHHH-------------HHHHc--CCEEEEEecCCCCC-HHHHHHHHHHh
Confidence 3211111110 00111 12346689999999 99999887654
No 192
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.86 E-value=1.4e-08 Score=92.34 Aligned_cols=106 Identities=15% Similarity=0.033 Sum_probs=59.6
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHH---HHhc-cCCeeEEEEeCccCCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQ---AFKQ-SVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~---~f~~-~~~i~~vVltK~D~~~~ 255 (494)
.+.+.|+||||...... +. ......+|.+++|+|++....... ... .+.. ..+ ..+|.||+|....
T Consensus 48 ~~~l~l~D~~G~~~~~~-----~~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~ 120 (161)
T cd04113 48 RVKLQIWDTAGQERFRS-----VT-RSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIV-VILVGNKSDLADQ 120 (161)
T ss_pred EEEEEEEECcchHHHHH-----hH-HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhcchh
Confidence 46788999999743221 11 122346899999999986433221 112 1221 234 4889999998543
Q ss_pred ccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
......... +...... .+...+|+..|.| +..+++.+.+.
T Consensus 121 ~~~~~~~~~------------~~~~~~~--~~~~~~Sa~~~~~-i~~~~~~~~~~ 160 (161)
T cd04113 121 REVTFLEAS------------RFAQENG--LLFLETSALTGEN-VEEAFLKCARS 160 (161)
T ss_pred ccCCHHHHH------------HHHHHcC--CEEEEEECCCCCC-HHHHHHHHHHh
Confidence 211111110 0001111 2446689999999 99999887653
No 193
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.86 E-value=1.1e-08 Score=95.23 Aligned_cols=152 Identities=14% Similarity=0.099 Sum_probs=82.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
+.|+++|++||||||+++++. +.+.. +.+.|...+. ... .+.+ . .
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~------~~~~~----~~~~~t~~~~---~~~--~~~~---~-----------------~ 46 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFV------EGHFV----ESYYPTIENT---FSK--IIRY---K-----------------G 46 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHH------hCCCc----cccCcchhhh---EEE--EEEE---C-----------------C
Confidence 358999999999999999998 33321 1111211100 000 0100 0 1
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHHhc-----cCCeeEEEEeCccCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ-----SVSVGAVIVTKMDGH 253 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~~-----~~~i~~vVltK~D~~ 253 (494)
..+.+.|+||||..... .+ .-......+.+++|.|.+...... .....+.+ ..+ ..+|.||+|..
T Consensus 47 ~~~~~~l~D~~g~~~~~-~~-----~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~ 119 (180)
T cd04137 47 QDYHLEIVDTAGQDEYS-IL-----PQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVP-IVLVGNKSDLH 119 (180)
T ss_pred EEEEEEEEECCChHhhH-HH-----HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEchhhh
Confidence 24678999999975321 11 111233578889999987543211 11122211 124 48999999985
Q ss_pred CCccchhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.......... +.+ ..+. .+...+|+..|.| +..+++++.+.+
T Consensus 120 ~~~~~~~~~~-------------~~~~~~~~--~~~~~~Sa~~~~g-v~~l~~~l~~~~ 162 (180)
T cd04137 120 TQRQVSTEEG-------------KELAESWG--AAFLESSARENEN-VEEAFELLIEEI 162 (180)
T ss_pred hcCccCHHHH-------------HHHHHHcC--CeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 4211110000 000 0111 2445689999998 999999887665
No 194
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.85 E-value=1.5e-08 Score=91.85 Aligned_cols=107 Identities=13% Similarity=0.079 Sum_probs=60.0
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc---HHHHHHHHhc-----cCCeeEEEEeCccCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ-----SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~---~~~~~~~f~~-----~~~i~~vVltK~D~~~ 254 (494)
.+.+.|+||||...... +. .......+.+++|+|...... .......+.. ..|+ .+|+||+|...
T Consensus 47 ~~~~~i~D~~g~~~~~~-----~~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-iiv~NK~D~~~ 119 (164)
T cd04139 47 DVQLNILDTAGQEDYAA-----IR-DNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPL-LLVGNKCDLED 119 (164)
T ss_pred EEEEEEEECCChhhhhH-----HH-HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEEcccccc
Confidence 46789999999754321 11 112335678889988765321 1122222221 2454 89999999864
Q ss_pred CccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.......... ....++. .|...+|+..|.| ++.+++.+.+.+
T Consensus 120 ~~~~~~~~~~------------~~~~~~~--~~~~~~Sa~~~~g-i~~l~~~l~~~~ 161 (164)
T cd04139 120 KRQVSSEEAA------------NLARQWG--VPYVETSAKTRQN-VEKAFYDLVREI 161 (164)
T ss_pred ccccCHHHHH------------HHHHHhC--CeEEEeeCCCCCC-HHHHHHHHHHHH
Confidence 2111111110 0001111 2456789999999 999998886654
No 195
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=98.85 E-value=2.2e-08 Score=103.65 Aligned_cols=121 Identities=33% Similarity=0.400 Sum_probs=82.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCc-----chh------------HHHHHhhhhccCccee
Q 011076 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR-----AGA------------FDQLKQNATKAKIPFY 160 (494)
Q Consensus 98 ~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r-----~~a------------~~qLk~~~~~~~i~~~ 160 (494)
.+.+.++|++|+.+|||||+++-|+..+-.+|++|+++|+|+.. |+. ..|+...+. -|.
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~~----~Fv 145 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFTL----YFV 145 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCCceEEeecccCCCCCHHHcCccce----EEE
Confidence 34567899999999999999999999999999999999999743 222 133332222 223
Q ss_pred ccCCCC-Ch---HHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCC
Q 011076 161 GSYTES-DP---VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS 224 (494)
Q Consensus 161 ~~~~~~-dp---~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~ 224 (494)
+..+.. .+ +.-+...++.++.. .|++||||+|....... ++-...+..+++||.++++=++.
T Consensus 146 G~isP~~~~~~~i~~v~rL~~~a~~~-~~~ilIdT~GWi~G~~g-~elk~~li~~ikP~~Ii~l~~~~ 211 (398)
T COG1341 146 GSISPQGFPGRYIAGVARLVDLAKKE-ADFILIDTDGWIKGWGG-LELKRALIDAIKPDLIIALERAN 211 (398)
T ss_pred eccCCCCChHHHHHHHHHHHHHhhcc-CCEEEEcCCCceeCchH-HHHHHHHHhhcCCCEEEEecccc
Confidence 333322 23 22344455555543 79999999999765322 23344677888999999887764
No 196
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.85 E-value=3.4e-08 Score=92.14 Aligned_cols=151 Identities=19% Similarity=0.140 Sum_probs=83.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|.+||||||+++++.. |.-. + +.| + .+..+.. . ..
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~-----~~~~---~---~~~---------t--~~~~~~~-~----------------~~ 54 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKL-----GESV---T---TIP---------T--IGFNVET-V----------------TY 54 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhc-----CCCC---C---cCC---------c--cccceEE-E----------------EE
Confidence 4599999999999999999861 2211 1 111 0 0111110 0 01
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHH-hc----cCCeeEEEEeCccCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAF-KQ----SVSVGAVIVTKMDGH 253 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f-~~----~~~i~~vVltK~D~~ 253 (494)
..+.+.|.||||...... +. -.....++.+++|+|++..... ......+ .. ..|+ .+|.||.|..
T Consensus 55 ~~~~l~l~D~~G~~~~~~-~~-----~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~pi-ilv~NK~Dl~ 127 (175)
T smart00177 55 KNISFTVWDVGGQDKIRP-LW-----RHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVI-LVFANKQDLP 127 (175)
T ss_pred CCEEEEEEECCCChhhHH-HH-----HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcE-EEEEeCcCcc
Confidence 256789999999754321 11 1123478999999998753211 1122222 11 1344 8999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccccC-ccchhhcccCCCCchHHHHHHHHhC
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFD-VKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~-p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.... ...+....+. ..+.... ....+|+.+|.| ++++++.+.+.+
T Consensus 128 ~~~~-~~~i~~~~~~-----------~~~~~~~~~~~~~Sa~~g~g-v~e~~~~l~~~~ 173 (175)
T smart00177 128 DAMK-AAEITEKLGL-----------HSIRDRNWYIQPTCATSGDG-LYEGLTWLSNNL 173 (175)
T ss_pred cCCC-HHHHHHHhCc-----------cccCCCcEEEEEeeCCCCCC-HHHHHHHHHHHh
Confidence 3211 1122221111 1111111 123489999999 999999887653
No 197
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.85 E-value=2.7e-08 Score=91.98 Aligned_cols=105 Identities=21% Similarity=0.288 Sum_probs=60.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhccC
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~~ 183 (494)
|+++|++||||||+++.++ +... +.+.|. .+..... +...+
T Consensus 2 i~~~G~~~~GKTsl~~~l~------~~~~-----~~~~~t-----------~g~~~~~-----------------~~~~~ 42 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQ------GEIP-----KKVAPT-----------VGFTPTK-----------------LRLDK 42 (167)
T ss_pred EEEECCCCCCHHHHHHHHh------CCCC-----ccccCc-----------ccceEEE-----------------EEECC
Confidence 8999999999999999998 3211 111110 0110000 00135
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHHhc-----cCCeeEEEEeCccCCC
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ-----SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~~-----~~~i~~vVltK~D~~~ 254 (494)
+.+.++||||...... + .......++.+++|+|++...... .....+.. ..|+ .+|.||.|...
T Consensus 43 ~~~~i~D~~G~~~~~~-----~-~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~pi-liv~NK~Dl~~ 114 (167)
T cd04161 43 YEVCIFDLGGGANFRG-----I-WVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPI-LVLANKQDKKN 114 (167)
T ss_pred EEEEEEECCCcHHHHH-----H-HHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcE-EEEEeCCCCcC
Confidence 7789999999643221 1 112235789999999997543211 12222211 2344 89999999754
No 198
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.84 E-value=1.8e-08 Score=92.97 Aligned_cols=154 Identities=13% Similarity=0.068 Sum_probs=81.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|.+||||||+++.+. +.+...... + ..+..+...... ...
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~------~~~~~~~~~-~--------------t~~~~~~~~~~~-------------~~~ 50 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFT------DKRFQPVHD-L--------------TIGVEFGARMIT-------------IDG 50 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHH------cCCCCCCCC-C--------------ccceeEEEEEEE-------------ECC
Confidence 359999999999999999998 433211100 0 001111000000 000
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHH---HHHHhc----cCCeeEEEEeCccCCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ---AQAFKQ----SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~---~~~f~~----~~~i~~vVltK~D~~~ 254 (494)
....+.|+||||..... .+. ......+|.+++|+|++......+. ...... ..++ .+|.||+|...
T Consensus 51 ~~~~~~i~Dt~G~~~~~-----~~~-~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pv-ivv~nK~Dl~~ 123 (168)
T cd01866 51 KQIKLQIWDTAGQESFR-----SIT-RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTI-MLIGNKCDLES 123 (168)
T ss_pred EEEEEEEEECCCcHHHH-----HHH-HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcE-EEEEECccccc
Confidence 13567899999964211 111 1223468999999998853322221 222211 2344 89999999863
Q ss_pred CccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.......... ...... ..+...+|+..|.| ++.+++.+.+.+
T Consensus 124 ~~~~~~~~~~------------~~~~~~--~~~~~e~Sa~~~~~-i~~~~~~~~~~~ 165 (168)
T cd01866 124 RREVSYEEGE------------AFAKEH--GLIFMETSAKTASN-VEEAFINTAKEI 165 (168)
T ss_pred ccCCCHHHHH------------HHHHHc--CCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 3211111110 000011 12345689999999 998888776654
No 199
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.84 E-value=2.6e-08 Score=90.50 Aligned_cols=104 Identities=14% Similarity=0.096 Sum_probs=58.3
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHHh---c--cCCeeEEEEeCccCCCC
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFK---Q--SVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~---~--~~~i~~vVltK~D~~~~ 255 (494)
+.+.|+||||..... .+.. .....++.+++|.|.+...... .....+. . ..|+ .+|.||+|....
T Consensus 49 ~~l~i~Dt~G~~~~~-----~~~~-~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~~ 121 (163)
T cd04136 49 CMLEILDTAGTEQFT-----AMRD-LYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPM-VLVGNKCDLEDE 121 (163)
T ss_pred EEEEEEECCCccccc-----hHHH-HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECcccccc
Confidence 456789999975432 1111 1123678899999987532211 1112221 1 2344 889999998543
Q ss_pred ccchhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
........ +.+ ..+. .|...+|+..|.| +..+++++.+.
T Consensus 122 ~~~~~~~~-------------~~~~~~~~--~~~~~~Sa~~~~~-v~~l~~~l~~~ 161 (163)
T cd04136 122 RVVSREEG-------------QALARQWG--CPFYETSAKSKIN-VDEVFADLVRQ 161 (163)
T ss_pred ceecHHHH-------------HHHHHHcC--CeEEEecCCCCCC-HHHHHHHHHHh
Confidence 21111111 111 1111 3456789999999 99999888654
No 200
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.84 E-value=2.9e-08 Score=89.62 Aligned_cols=150 Identities=16% Similarity=0.140 Sum_probs=79.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|.+||||||+++++. +.+. .+.+.|...+. +.. .+.+ . ..
T Consensus 3 ki~iiG~~~vGKTsl~~~~~------~~~~----~~~~~~t~~~~---~~~--~~~~----~----------------~~ 47 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLI------QNHF----VDEYDPTIEDS---YRK--QVVI----D----------------GE 47 (162)
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCC----cCCcCCcchhe---EEE--EEEE----C----------------CE
Confidence 48999999999999999998 3221 01111110000 000 0000 0 01
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHh-----ccCCeeEEEEeCccCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK-----QSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~-----~~~~i~~vVltK~D~~~ 254 (494)
.+.+-|+||||..... .+.. .....++.+++|+|.+......+ ....+. ...|+ .+|.||+|...
T Consensus 48 ~~~~~i~Dt~G~~~~~-~l~~-----~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ivv~nK~Dl~~ 120 (162)
T cd04138 48 TCLLDILDTAGQEEYS-AMRD-----QYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPM-VLVGNKCDLAA 120 (162)
T ss_pred EEEEEEEECCCCcchH-HHHH-----HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccccc
Confidence 2446689999975422 1111 12235788888988764322111 112221 12344 88999999865
Q ss_pred CccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
+......... ....+. .+...+|+..|.| ++++++.+.+.
T Consensus 121 ~~~~~~~~~~-------------~~~~~~--~~~~~~Sa~~~~g-i~~l~~~l~~~ 160 (162)
T cd04138 121 RTVSSRQGQD-------------LAKSYG--IPYIETSAKTRQG-VEEAFYTLVRE 160 (162)
T ss_pred ceecHHHHHH-------------HHHHhC--CeEEEecCCCCCC-HHHHHHHHHHH
Confidence 3211111110 001111 2345689999999 99999888654
No 201
>CHL00071 tufA elongation factor Tu
Probab=98.84 E-value=1.7e-08 Score=107.04 Aligned_cols=129 Identities=21% Similarity=0.183 Sum_probs=69.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+++|||||++.|...+.....+.....+ ..|++.. ....++..-... ..+.
T Consensus 12 ~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~------~~d~~~~-e~~rg~T~~~~~-------------~~~~ 71 (409)
T CHL00071 12 HVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYD------EIDSAPE-EKARGITINTAH-------------VEYE 71 (409)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCccccccccccc------cccCChh-hhcCCEeEEccE-------------EEEc
Confidence 4569999999999999999998554321111111100 0111110 001122111000 0011
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH--HHHHHHh-ccCCeeEEEEeCccCCCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAFK-QSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~--~~~~~f~-~~~~i~~vVltK~D~~~~ 255 (494)
.++..++||||||.. .+...+ +..+..+|.+++|+|+..|.... +.+.... ..++...+++||+|....
T Consensus 72 ~~~~~~~~iDtPGh~----~~~~~~--~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~ 143 (409)
T CHL00071 72 TENRHYAHVDCPGHA----DYVKNM--ITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDD 143 (409)
T ss_pred cCCeEEEEEECCChH----HHHHHH--HHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCH
Confidence 235678999999953 333333 23344689999999998764322 2233222 224434678999998643
No 202
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.83 E-value=1.1e-08 Score=113.29 Aligned_cols=109 Identities=21% Similarity=0.174 Sum_probs=63.5
Q ss_pred CCcEEEEeCCCCCchhHH-HHHHHH-HHHHhcCCCEEEEEecCCCcccHHHHHHHHh-ccCCeeEEEEeCccCCCCccch
Q 011076 183 NCDLIIVDTSGRHKQEAA-LFEEMR-QVSEATNPDLVIFVMDSSIGQAAFDQAQAFK-QSVSVGAVIVTKMDGHAKGGGA 259 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~-l~~el~-~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~-~~~~i~~vVltK~D~~~~~g~~ 259 (494)
+..+.++||||....... ..+++. .......+|.+++|+|++..+.......... ...|+ .+|+||+|...+.+..
T Consensus 40 ~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler~l~l~~ql~~~~~Pi-IIVlNK~Dl~~~~~i~ 118 (591)
T TIGR00437 40 GEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLERNLYLTLQLLELGIPM-ILALNLVDEAEKKGIR 118 (591)
T ss_pred CeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchhhHHHHHHHHhcCCCE-EEEEehhHHHHhCCCh
Confidence 456899999998643211 111121 2222346899999999986544333333332 23444 8999999986443321
Q ss_pred hH---HHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 260 LS---AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 260 ls---~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.. .....+ .|...+|+..|.| ++++.+.+.+..
T Consensus 119 ~d~~~L~~~lg------------------~pvv~tSA~tg~G-i~eL~~~i~~~~ 154 (591)
T TIGR00437 119 IDEEKLEERLG------------------VPVVPTSATEGRG-IERLKDAIRKAI 154 (591)
T ss_pred hhHHHHHHHcC------------------CCEEEEECCCCCC-HHHHHHHHHHHh
Confidence 11 111112 2456678888888 888888876653
No 203
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.83 E-value=3.9e-08 Score=88.61 Aligned_cols=150 Identities=13% Similarity=0.081 Sum_probs=81.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhccC
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~~ 183 (494)
|+++|++||||||+++.+. +.+ . .+.+++... ......+.. . ...
T Consensus 2 i~i~G~~~~GKTsli~~l~------~~~--~--~~~~~~~~~-------~~~~~~~~~--~----------------~~~ 46 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFV------KGT--F--VEEYDPTIE-------DSYRKTIVV--D----------------GET 46 (160)
T ss_pred EEEECCCCCCHHHHHHHHH------hCC--C--CcCcCCChh-------HeEEEEEEE--C----------------CEE
Confidence 8999999999999999997 332 1 111222100 000000000 0 014
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHH---hc--cCCeeEEEEeCccCCCC
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAF---KQ--SVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f---~~--~~~i~~vVltK~D~~~~ 255 (494)
+.+.++||||...... +.. ......|.+++|+|.+......+ ....+ .. ..| ..+|+||+|....
T Consensus 47 ~~~~l~D~~g~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~ 119 (160)
T cd00876 47 YTLDILDTAGQEEFSA-MRD-----LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIP-IVLVGNKCDLENE 119 (160)
T ss_pred EEEEEEECCChHHHHH-HHH-----HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCccccc
Confidence 6778999999754221 111 11235789999999875432211 11122 12 234 4899999998653
Q ss_pred ccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
......... +....+ ..+...+|+..|.| +..+++.+.+.
T Consensus 120 ~~~~~~~~~------------~~~~~~--~~~~~~~S~~~~~~-i~~l~~~l~~~ 159 (160)
T cd00876 120 RQVSKEEGK------------ALAKEW--GCPFIETSAKDNIN-IDEVFKLLVRE 159 (160)
T ss_pred ceecHHHHH------------HHHHHc--CCcEEEeccCCCCC-HHHHHHHHHhh
Confidence 211111111 000111 13556789999988 99999888654
No 204
>PRK00049 elongation factor Tu; Reviewed
Probab=98.83 E-value=3.9e-08 Score=103.93 Aligned_cols=126 Identities=21% Similarity=0.177 Sum_probs=71.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEE--cccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC--ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs--~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~ 178 (494)
...|+++|..++|||||++.|.....+.|..-.... .|... +......+..-. ...
T Consensus 12 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~----~E~~rg~Ti~~~-~~~----------------- 69 (396)
T PRK00049 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAP----EEKARGITINTA-HVE----------------- 69 (396)
T ss_pred EEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCCh----HHHhcCeEEeee-EEE-----------------
Confidence 345999999999999999999976655443221111 11110 111112221111 010
Q ss_pred HhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH--HHHHHHhc-cCCeeEEEEeCccCCC
Q 011076 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAFKQ-SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 179 ~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~--~~~~~f~~-~~~i~~vVltK~D~~~ 254 (494)
+...+..++||||||.. .+...+. ..+..+|.+++|+|+..|.... +.+..... ..+...+++||+|...
T Consensus 70 ~~~~~~~i~~iDtPG~~----~f~~~~~--~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 70 YETEKRHYAHVDCPGHA----DYVKNMI--TGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred EcCCCeEEEEEECCCHH----HHHHHHH--hhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcc
Confidence 11135678999999974 2333332 2345789999999998764322 22322222 2444346899999864
No 205
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=98.83 E-value=1.6e-08 Score=88.69 Aligned_cols=88 Identities=23% Similarity=0.212 Sum_probs=58.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcce---eccC-----CCCChH-HHHHH
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPF---YGSY-----TESDPV-RIAVE 174 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~---~~~~-----~~~dp~-~i~~~ 174 (494)
|++.|.+|+||||++..|+.+++++|++|.++++|+ +...+.+..... +.++ .+.. ....+. ....+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~--~~~~~~~~~~~~--~~~~~i~~g~~~~~~~g~~~~~n~~~~~ 77 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP--DDLPERLSVEVG--EIKLLLVMGMGRPGGEGCYCPENALLNA 77 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc--hhhHHHHhhccC--CceEEEEecccccCCCCCEehhhHHHHH
Confidence 789999999999999999999999999999999999 222222221111 1111 1111 011122 24566
Q ss_pred HHHHHhccCCcEEEEeCCCCC
Q 011076 175 GVETFKKENCDLIIVDTSGRH 195 (494)
Q Consensus 175 ~l~~~~~~~~dvIIIDTaG~~ 195 (494)
.+.++...++|++++||++..
T Consensus 78 ~l~~~~~~~~~~vivDt~ag~ 98 (116)
T cd02034 78 LLRHLVLTRDEQVVVDTEAGL 98 (116)
T ss_pred HHHHeEccCCCEEEEecHHHH
Confidence 677766678999999996653
No 206
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.82 E-value=3e-08 Score=96.24 Aligned_cols=66 Identities=26% Similarity=0.391 Sum_probs=40.1
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCc-------c--cHHHHHHHHhc-cCCeeEEEEeCcc
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-------Q--AAFDQAQAFKQ-SVSVGAVIVTKMD 251 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g-------~--~~~~~~~~f~~-~~~i~~vVltK~D 251 (494)
.++.+.++||||..... .++ +..+..+|.+++|+|++.+ . ........... ..+...+|+||+|
T Consensus 75 ~~~~i~liDtpG~~~~~----~~~--~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~D 148 (219)
T cd01883 75 EKYRFTILDAPGHRDFV----PNM--ITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMD 148 (219)
T ss_pred CCeEEEEEECCChHHHH----HHH--HHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccc
Confidence 47789999999964322 222 2234468999999999863 1 11222221111 2234477999999
Q ss_pred CC
Q 011076 252 GH 253 (494)
Q Consensus 252 ~~ 253 (494)
..
T Consensus 149 l~ 150 (219)
T cd01883 149 DV 150 (219)
T ss_pred cc
Confidence 86
No 207
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.82 E-value=1.8e-08 Score=92.00 Aligned_cols=150 Identities=13% Similarity=0.095 Sum_probs=80.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceec--cCCCCChHHHHHHHHHHHh
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG--SYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~--~~~~~dp~~i~~~~l~~~~ 180 (494)
.|+++|++||||||+++++. +.+..... .| ..+..+.. ....
T Consensus 5 ki~vvG~~~~GKSsli~~l~------~~~~~~~~----~~-----------t~~~~~~~~~~~~~--------------- 48 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFT------RNEFNLDS----KS-----------TIGVEFATRSIQID--------------- 48 (165)
T ss_pred EEEEECCCCCCHHHHHHHHh------cCCCCCCC----CC-----------ccceEEEEEEEEEC---------------
Confidence 58999999999999999998 44321111 11 00111100 0000
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhc----cCCeeEEEEeCccCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDGH 253 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~----~~~i~~vVltK~D~~ 253 (494)
...+.+.++||||..... .+.. .....++.+++|.|++......+ ....+.+ ..| ..+|.||.|..
T Consensus 49 ~~~~~~~l~D~~g~~~~~-----~~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-i~vv~nK~Dl~ 121 (165)
T cd01868 49 GKTIKAQIWDTAGQERYR-----AITS-AYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIV-IMLVGNKSDLR 121 (165)
T ss_pred CEEEEEEEEeCCChHHHH-----HHHH-HHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccc
Confidence 013567899999964321 1111 12235788999999975332221 1222222 133 37899999975
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
.......... +.... ....+...+|+..|.| ++.+++.+.+.
T Consensus 122 ~~~~~~~~~~-------------~~~~~-~~~~~~~~~Sa~~~~~-v~~l~~~l~~~ 163 (165)
T cd01868 122 HLRAVPTEEA-------------KAFAE-KNGLSFIETSALDGTN-VEEAFKQLLTE 163 (165)
T ss_pred ccccCCHHHH-------------HHHHH-HcCCEEEEEECCCCCC-HHHHHHHHHHH
Confidence 3211111000 00100 0112345689999999 99999988654
No 208
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.82 E-value=2.8e-08 Score=91.45 Aligned_cols=154 Identities=15% Similarity=0.107 Sum_probs=83.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|++||||||+++++. +.+. .+.|.+ ..++++...... ...
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~------~~~f----~~~~~~-----------t~~~~~~~~~~~-------------~~~ 49 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFS------EDSF----NPSFIS-----------TIGIDFKIRTIE-------------LDG 49 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHh------hCcC----Cccccc-----------CccceEEEEEEE-------------ECC
Confidence 469999999999999999998 3221 011111 111111100000 001
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhc----cCCeeEEEEeCccCCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~----~~~i~~vVltK~D~~~ 254 (494)
..+.+.|.||||..... .+. ......+|.+++|.|++......+ ....+.. ..+ ..+|.||+|...
T Consensus 50 ~~~~l~l~D~~g~~~~~-----~~~-~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~ 122 (167)
T cd01867 50 KKIKLQIWDTAGQERFR-----TIT-TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVE-RMLVGNKCDMEE 122 (167)
T ss_pred EEEEEEEEeCCchHHHH-----HHH-HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECccccc
Confidence 13567899999964322 111 122346899999999875433211 1222221 233 489999999864
Q ss_pred CccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.......... +....+. .+...+|+..|.| +..+++.+.+.+
T Consensus 123 ~~~~~~~~~~------------~~~~~~~--~~~~~~Sa~~~~~-v~~~~~~i~~~~ 164 (167)
T cd01867 123 KRVVSKEEGE------------ALADEYG--IKFLETSAKANIN-VEEAFFTLAKDI 164 (167)
T ss_pred ccCCCHHHHH------------HHHHHcC--CEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 3111111110 0001111 2446789999998 999998887654
No 209
>PRK12735 elongation factor Tu; Reviewed
Probab=98.82 E-value=5.1e-08 Score=103.03 Aligned_cols=126 Identities=20% Similarity=0.170 Sum_probs=69.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEE--cccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC--ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs--~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~ 178 (494)
...|+++|.+++|||||++.|.......|..-.... .|.. -+.-+...+.. +....
T Consensus 12 ~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~----~~E~~rGiT~~-~~~~~----------------- 69 (396)
T PRK12735 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNA----PEEKARGITIN-TSHVE----------------- 69 (396)
T ss_pred eEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCC----hhHHhcCceEE-EeeeE-----------------
Confidence 355999999999999999999876554443211110 1110 01111111111 10000
Q ss_pred HhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH--HHHHHHHh-ccCCeeEEEEeCccCCC
Q 011076 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFK-QSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 179 ~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~--~~~~~~f~-~~~~i~~vVltK~D~~~ 254 (494)
+..++..++|+||||.. .+...+ +..+..+|.+++|+|+..+... .+.+.... ..++...+++||+|...
T Consensus 70 ~~~~~~~i~~iDtPGh~----~f~~~~--~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 70 YETANRHYAHVDCPGHA----DYVKNM--ITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred EcCCCcEEEEEECCCHH----HHHHHH--HhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcc
Confidence 11135678999999963 333333 2334578999999999876322 22333222 22444345799999864
No 210
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.82 E-value=4.7e-08 Score=90.63 Aligned_cols=149 Identities=18% Similarity=0.105 Sum_probs=81.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|.+||||||++++|.. +..+ .+.|. .++.+.. .. .
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~~-----~~~~------~~~~t-----------~g~~~~~-~~----------------~ 50 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKL-----GQSV------TTIPT-----------VGFNVET-VT----------------Y 50 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHcc-----CCCc------cccCC-----------cccceEE-EE----------------E
Confidence 4589999999999999999862 1111 11110 0111110 00 1
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHH-hc----cCCeeEEEEeCccCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAF-KQ----SVSVGAVIVTKMDGH 253 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f-~~----~~~i~~vVltK~D~~ 253 (494)
.++.+.|.||||...... +.. .....+|.+++|+|++......+ ....+ .. ..| ..+|.||+|..
T Consensus 51 ~~~~~~l~Dt~G~~~~~~-~~~-----~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~ 123 (168)
T cd04149 51 KNVKFNVWDVGGQDKIRP-LWR-----HYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDAL-LLVFANKQDLP 123 (168)
T ss_pred CCEEEEEEECCCCHHHHH-HHH-----HHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCc-EEEEEECcCCc
Confidence 256789999999853321 111 12346899999999885422211 12122 11 134 48999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccc-cCccchhhcccCCCCchHHHHHHHH
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEV-FDVKPFVSRLLGMGDWSGFMDKIHE 309 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~-f~p~~~vs~~~G~Gdi~~L~e~i~~ 309 (494)
.... .-.+....+ ...+.. ..+...+|++.|.| +..+++++.+
T Consensus 124 ~~~~-~~~i~~~~~-----------~~~~~~~~~~~~~~SAk~g~g-v~~~~~~l~~ 167 (168)
T cd04149 124 DAMK-PHEIQEKLG-----------LTRIRDRNWYVQPSCATSGDG-LYEGLTWLSS 167 (168)
T ss_pred cCCC-HHHHHHHcC-----------CCccCCCcEEEEEeeCCCCCC-hHHHHHHHhc
Confidence 4311 111111000 111111 11335689999999 9999888753
No 211
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.82 E-value=3.7e-08 Score=108.58 Aligned_cols=184 Identities=17% Similarity=0.195 Sum_probs=90.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
++.+|+++|.+|+||||++++|. +.++. ... ++. .+...+..+................. ..
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~------~~~v~--~~e---~gg------iTq~iG~~~v~~~~~~~~~~~~~~~~-~v 64 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIR------GSAVA--KRE---AGG------ITQHIGATEIPMDVIEGICGDLLKKF-KI 64 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh------ccccc--ccc---CCc------eecccCeeEeeecccccccccccccc-cc
Confidence 35689999999999999999998 54432 111 000 01111111111000000000000000 00
Q ss_pred hccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc--HHHHHHHHh-ccCCeeEEEEeCccCCCCc
Q 011076 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFK-QSVSVGAVIVTKMDGHAKG 256 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~--~~~~~~~f~-~~~~i~~vVltK~D~~~~~ 256 (494)
......+.|+||||..... .+. ......+|.+++|+|++.|.. ..+.+..+. ...|+ .+++||+|.....
T Consensus 65 ~~~~~~l~~iDTpG~e~f~-----~l~-~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpi-IVv~NK~Dl~~~~ 137 (590)
T TIGR00491 65 RLKIPGLLFIDTPGHEAFT-----NLR-KRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPF-VVAANKIDRIPGW 137 (590)
T ss_pred ccccCcEEEEECCCcHhHH-----HHH-HHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCE-EEEEECCCccchh
Confidence 0011348999999964322 121 122346899999999986532 222333332 23454 8999999986311
Q ss_pred ----c-chhHHHHhcCCCe-------------EEeccc---cc---cccccccCccchhhcccCCCCchHHHHHHHH
Q 011076 257 ----G-GALSAVAATKSPV-------------IFIGTG---EH---MDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (494)
Q Consensus 257 ----g-~~ls~~~~~g~Pi-------------~fi~~G---e~---i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~ 309 (494)
+ ..+......+..+ .+...| +. +.++....|..++|+++|.| ++.|++.+..
T Consensus 138 ~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeG-ideLl~~l~~ 213 (590)
T TIGR00491 138 RSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEG-IPELLTMLAG 213 (590)
T ss_pred hhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCC-hhHHHHHHHH
Confidence 0 0011000000000 000011 10 11233445678899999999 9999987753
No 212
>PLN03118 Rab family protein; Provisional
Probab=98.82 E-value=3.6e-08 Score=94.70 Aligned_cols=154 Identities=14% Similarity=0.103 Sum_probs=83.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+|+|.+||||||++++|+ +.++.-.+ + ..+..+...... ..
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~------~~~~~~~~-----~-----------t~~~~~~~~~~~-------------~~ 58 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFI------SSSVEDLA-----P-----------TIGVDFKIKQLT-------------VG 58 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHH------hCCCCCcC-----C-----------CceeEEEEEEEE-------------EC
Confidence 4569999999999999999998 33321111 0 111111100000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHH-------HHhc--cCCeeEEEEeCcc
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQ-------AFKQ--SVSVGAVIVTKMD 251 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~-------~f~~--~~~i~~vVltK~D 251 (494)
...+.+.|+||||...... +.. .....+|.+++|+|.+......+... .+.. ..+ ..+|.||+|
T Consensus 59 ~~~~~l~l~Dt~G~~~~~~-~~~-----~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~D 131 (211)
T PLN03118 59 GKRLKLTIWDTAGQERFRT-LTS-----SYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCV-KMLVGNKVD 131 (211)
T ss_pred CEEEEEEEEECCCchhhHH-HHH-----HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcc
Confidence 0246789999999754321 111 12336799999999986432222111 1111 123 478999999
Q ss_pred CCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 252 GHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 252 ~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
............. +...+. ..+...+|+..|.| ++.+++.+.+.+
T Consensus 132 l~~~~~i~~~~~~------------~~~~~~--~~~~~e~SAk~~~~-v~~l~~~l~~~~ 176 (211)
T PLN03118 132 RESERDVSREEGM------------ALAKEH--GCLFLECSAKTREN-VEQCFEELALKI 176 (211)
T ss_pred ccccCccCHHHHH------------HHHHHc--CCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 8543211111110 000011 12335679999999 999999887765
No 213
>PRK12736 elongation factor Tu; Reviewed
Probab=98.82 E-value=4.3e-08 Score=103.49 Aligned_cols=173 Identities=20% Similarity=0.191 Sum_probs=91.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEE--cccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC--ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs--~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~ 178 (494)
...|+++|..++|||||+..|.......|....... .|... +.-+...+..-. .. .
T Consensus 12 ~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~----~E~~rg~T~~~~-~~-----------------~ 69 (394)
T PRK12736 12 HVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAP----EEKERGITINTA-HV-----------------E 69 (394)
T ss_pred eeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCH----HHHhcCccEEEE-ee-----------------E
Confidence 456999999999999999999966554443222111 11110 011111111110 00 0
Q ss_pred HhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc--HHHHHHHHh-ccCCeeEEEEeCccCCCC
Q 011076 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFK-QSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 179 ~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~--~~~~~~~f~-~~~~i~~vVltK~D~~~~ 255 (494)
+...+..+.||||||.. ++...+ +..+..+|.+++|+|+..|.. ..+.+.... ..++..++++||+|....
T Consensus 70 ~~~~~~~i~~iDtPGh~----~f~~~~--~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~ 143 (394)
T PRK12736 70 YETEKRHYAHVDCPGHA----DYVKNM--ITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDD 143 (394)
T ss_pred ecCCCcEEEEEECCCHH----HHHHHH--HHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcch
Confidence 11135678999999953 233333 233446899999999987632 222333222 224433678999998632
Q ss_pred ccchhHHHH-hcCCCeEEeccccccccc---cccCccchhhcccCC--------CCchHHHHHHHHhCC
Q 011076 256 GGGALSAVA-ATKSPVIFIGTGEHMDEF---EVFDVKPFVSRLLGM--------GDWSGFMDKIHEVVP 312 (494)
Q Consensus 256 ~g~~ls~~~-~~g~Pi~fi~~Ge~i~~l---~~f~p~~~vs~~~G~--------Gdi~~L~e~i~~~~~ 312 (494)
. ....... ... +.+..+ ....|..++|++.|. + +..|++.+.+.++
T Consensus 144 ~-~~~~~i~~~i~---------~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~-i~~Ll~~l~~~lp 201 (394)
T PRK12736 144 E-ELLELVEMEVR---------ELLSEYDFPGDDIPVIRGSALKALEGDPKWEDA-IMELMDAVDEYIP 201 (394)
T ss_pred H-HHHHHHHHHHH---------HHHHHhCCCcCCccEEEeeccccccCCCcchhh-HHHHHHHHHHhCC
Confidence 2 1222111 000 000000 012355667777763 3 6788888888775
No 214
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.81 E-value=1.2e-08 Score=104.61 Aligned_cols=149 Identities=17% Similarity=0.246 Sum_probs=88.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhH-HH-HHhhhhccCcce-eccCCCC---ChHHHHHHHH
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-DQ-LKQNATKAKIPF-YGSYTES---DPVRIAVEGV 176 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~-~q-Lk~~~~~~~i~~-~~~~~~~---dp~~i~~~~l 176 (494)
+.++.|.-||||||++++|..... |+|++++=++..-.+-- .. +...... -++. -++.+++ +.+..... +
T Consensus 3 VtvitGFLGsGKTTlL~~lL~~~~--g~kiAVIVNEfGEvgID~~~~l~~~~e~-~~El~nGCICCT~r~dl~~~~~~-L 78 (323)
T COG0523 3 VTVITGFLGSGKTTLLNHLLANRD--GKKIAVIVNEFGEVGIDGGALLSDTGEE-VVELTNGCICCTVRDDLLPALER-L 78 (323)
T ss_pred EEEEeecCCCCHHHHHHHHHhccC--CCcEEEEEecCccccccCCCccccCCcc-EEEeCCceEEEeccchhHHHHHH-H
Confidence 688999999999999999986655 89999988865433221 01 1111111 0000 1112222 44443333 3
Q ss_pred HHHhccCCcEEEEeCCCCCchhHHHHHHHH--HHHHhcCCCEEEEEecCCCcccHHH-HHHHHhccCC-eeEEEEeCccC
Q 011076 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMR--QVSEATNPDLVIFVMDSSIGQAAFD-QAQAFKQSVS-VGAVIVTKMDG 252 (494)
Q Consensus 177 ~~~~~~~~dvIIIDTaG~~~~~~~l~~el~--~i~~~~~~d~vllVvDa~~g~~~~~-~~~~f~~~~~-i~~vVltK~D~ 252 (494)
.. ..+++|+|+|.|.|......-...... .+.....-|.++-|||+........ ....+.+.+. -+.+|+||.|.
T Consensus 79 ~~-~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD~ivlNK~Dl 157 (323)
T COG0523 79 LR-RRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFADVIVLNKTDL 157 (323)
T ss_pred Hh-ccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCcEEEEecccC
Confidence 33 456699999999999865322222211 1223334577999999986543333 3344444332 36899999999
Q ss_pred CCCc
Q 011076 253 HAKG 256 (494)
Q Consensus 253 ~~~~ 256 (494)
....
T Consensus 158 v~~~ 161 (323)
T COG0523 158 VDAE 161 (323)
T ss_pred CCHH
Confidence 8764
No 215
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.81 E-value=3.2e-08 Score=90.68 Aligned_cols=105 Identities=12% Similarity=0.042 Sum_probs=59.1
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHHh---c-cCCeeEEEEeCccCCCCc
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFK---Q-SVSVGAVIVTKMDGHAKG 256 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~---~-~~~i~~vVltK~D~~~~~ 256 (494)
+.+.++||||........ ......+|.+++|+|++...... .....++ . .++ ..+|.||+|.....
T Consensus 56 ~~~~~~D~~g~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-~i~v~NK~D~~~~~ 128 (169)
T cd04114 56 IKLQIWDTAGQERFRSIT------QSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVI-TILVGNKIDLAERR 128 (169)
T ss_pred EEEEEEECCCcHHHHHHH------HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccccccc
Confidence 457889999964322111 11234688999999987543221 1222222 2 233 38999999975332
Q ss_pred cchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 257 g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
....... +.+..... .+...+|+..|.| +..+++.+.+.
T Consensus 129 ~i~~~~~-------------~~~~~~~~-~~~~~~Sa~~~~g-v~~l~~~i~~~ 167 (169)
T cd04114 129 EVSQQRA-------------EEFSDAQD-MYYLETSAKESDN-VEKLFLDLACR 167 (169)
T ss_pred ccCHHHH-------------HHHHHHcC-CeEEEeeCCCCCC-HHHHHHHHHHH
Confidence 1111111 11111111 3445689999999 99999988754
No 216
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.81 E-value=3.2e-08 Score=94.12 Aligned_cols=109 Identities=19% Similarity=0.078 Sum_probs=61.7
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHH---HHHH---h--ccCCeeEEEEeCccCCCC
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ---AQAF---K--QSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~---~~~f---~--~~~~i~~vVltK~D~~~~ 255 (494)
+.+.|+||||...... +.. .....+|.+++|+|++......+. ...+ . ...|+ .+|+||+|....
T Consensus 47 ~~l~i~D~~G~~~~~~-----~~~-~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~NK~Dl~~~ 119 (198)
T cd04147 47 LTLDILDTSGSYSFPA-----MRK-LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPI-VVVGNKADSLEE 119 (198)
T ss_pred EEEEEEECCCchhhhH-----HHH-HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcE-EEEEEccccccc
Confidence 5678999999754321 111 123468999999998754322111 1111 1 12444 999999998543
Q ss_pred ccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
... ...... ..........+...+|+..|.| ++.+++.+.+.+.
T Consensus 120 ~~~-v~~~~~-----------~~~~~~~~~~~~~~~Sa~~g~g-v~~l~~~l~~~~~ 163 (198)
T cd04147 120 ERQ-VPAKDA-----------LSTVELDWNCGFVETSAKDNEN-VLEVFKELLRQAN 163 (198)
T ss_pred ccc-ccHHHH-----------HHHHHhhcCCcEEEecCCCCCC-HHHHHHHHHHHhh
Confidence 111 111000 0000011113445689999999 9999999887663
No 217
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.80 E-value=9e-09 Score=94.90 Aligned_cols=119 Identities=13% Similarity=0.106 Sum_probs=62.1
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHH----HHHH---hccCCeeEEEEeCccCCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ----AQAF---KQSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~----~~~f---~~~~~i~~vVltK~D~~~~ 255 (494)
.+.+.|+||||...... +.. ......|.+++|.|.+......+. ...+ ....|+ .+|.||+|....
T Consensus 47 ~~~~~i~Dt~G~~~~~~-----~~~-~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~pi-ivv~nK~Dl~~~ 119 (174)
T cd04135 47 QYLLGLYDTAGQEDYDR-----LRP-LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPY-LLVGTQIDLRDD 119 (174)
T ss_pred EEEEEEEeCCCcccccc-----ccc-ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCE-EEEeEchhhhcC
Confidence 45677999999754321 111 123357888999998754332111 1122 223455 889999998544
Q ss_pred ccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
....-........++. ...++....-....+...+|++.|.| ++++++.+.+.
T Consensus 120 ~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~e~Sa~~~~g-i~~~f~~~~~~ 172 (174)
T cd04135 120 PKTLARLNDMKEKPVT-VEQGQKLAKEIGAHCYVECSALTQKG-LKTVFDEAILA 172 (174)
T ss_pred hhhHHHHhhccCCCCC-HHHHHHHHHHcCCCEEEEecCCcCCC-HHHHHHHHHHH
Confidence 3222111111111111 01111111101112345689999999 99999988654
No 218
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.80 E-value=2.7e-08 Score=91.34 Aligned_cols=153 Identities=14% Similarity=0.117 Sum_probs=82.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|++||||||++++|. +.+.. ..|.+ ..++++....... ...
T Consensus 3 ki~i~G~~~~GKSsli~~l~------~~~~~----~~~~~-----------t~~~~~~~~~~~~-------------~~~ 48 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYA------DDSFT----SAFVS-----------TVGIDFKVKTVFR-------------NDK 48 (165)
T ss_pred EEEEECCCCCCHHHHHHHHh------cCCCC----CCCCC-----------ceeeEEEEEEEEE-------------CCE
Confidence 48999999999999999998 33321 00111 0111111000000 002
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHHhcc---CCeeEEEEeCccCCCCc
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQS---VSVGAVIVTKMDGHAKG 256 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~~~---~~i~~vVltK~D~~~~~ 256 (494)
.+.+.|.||||..... .+ .......++.+++|+|.+...... +....+... ..+..+|.||+|.....
T Consensus 49 ~~~~~l~Dt~g~~~~~-----~~-~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 122 (165)
T cd01865 49 RVKLQIWDTAGQERYR-----TI-TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDER 122 (165)
T ss_pred EEEEEEEECCChHHHH-----HH-HHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCccc
Confidence 3568899999964321 11 112234688999999987432211 112222221 12349999999985432
Q ss_pred cchhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 257 GGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 257 g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
....... +.+ ..+. .+...+|+..|.| +..|++.+.+.+
T Consensus 123 ~~~~~~~-------------~~~~~~~~--~~~~~~Sa~~~~g-v~~l~~~l~~~~ 162 (165)
T cd01865 123 VVSSERG-------------RQLADQLG--FEFFEASAKENIN-VKQVFERLVDII 162 (165)
T ss_pred ccCHHHH-------------HHHHHHcC--CEEEEEECCCCCC-HHHHHHHHHHHH
Confidence 1100000 001 1111 1345689999999 999999987654
No 219
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.80 E-value=3.4e-08 Score=90.03 Aligned_cols=108 Identities=18% Similarity=0.157 Sum_probs=60.3
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHHhcc--CCeeEEEEeCccCCCCcc
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQS--VSVGAVIVTKMDGHAKGG 257 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~~~--~~i~~vVltK~D~~~~~g 257 (494)
.+.+.+.||||..... .+. ......+|.+++|+|.+...... .....+... -.+..+|.||+|......
T Consensus 51 ~~~l~i~Dt~G~~~~~-----~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 124 (164)
T cd04101 51 TVELFIFDSAGQELYS-----DMV-SNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAE 124 (164)
T ss_pred EEEEEEEECCCHHHHH-----HHH-HHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccC
Confidence 4678999999964322 121 11234789999999987543221 112222221 123489999999854321
Q ss_pred chhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 258 ~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
....... ... .....+...+|+..|.| ++.+++.+.+.+
T Consensus 125 ~~~~~~~-------------~~~-~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 163 (164)
T cd04101 125 VTDAQAQ-------------AFA-QANQLKFFKTSALRGVG-YEEPFESLARAF 163 (164)
T ss_pred CCHHHHH-------------HHH-HHcCCeEEEEeCCCCCC-hHHHHHHHHHHh
Confidence 1110000 000 00112345689999999 999998887653
No 220
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.79 E-value=4.7e-08 Score=89.96 Aligned_cols=108 Identities=19% Similarity=0.157 Sum_probs=62.8
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHH----HHHHh---ccCCeeEEEEeCccCCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ----AQAFK---QSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~----~~~f~---~~~~i~~vVltK~D~~~~ 255 (494)
.+++.|+||||.......+. .....+|.+++|+|++........ ...+. ...|+ .+|.||+|....
T Consensus 46 ~~~~~i~Dt~G~~~~~~~~~------~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pv-iiv~nK~Dl~~~ 118 (166)
T cd01893 46 RVPTTIVDTSSRPQDRANLA------AEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPI-ILVGNKSDLRDG 118 (166)
T ss_pred eEEEEEEeCCCchhhhHHHh------hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhcccc
Confidence 56889999999864322211 113568899999998764332221 12222 23444 889999998644
Q ss_pred ccch-h-HHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 256 GGGA-L-SAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 256 ~g~~-l-s~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.... + ... ..+ ..+....+...+|+..|.| ++.+++.+.+.+
T Consensus 119 ~~~~~~~~~~-------------~~~~~~~~~~~~~~e~Sa~~~~~-v~~lf~~~~~~~ 163 (166)
T cd01893 119 SSQAGLEEEM-------------LPIMNEFREIETCVECSAKTLIN-VSEVFYYAQKAV 163 (166)
T ss_pred cchhHHHHHH-------------HHHHHHHhcccEEEEeccccccC-HHHHHHHHHHHh
Confidence 2110 0 000 000 1111122445689999999 999999988765
No 221
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.78 E-value=8.4e-09 Score=94.46 Aligned_cols=160 Identities=16% Similarity=0.128 Sum_probs=82.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|.+||||||+++.|. +.+. ...+.+...+ ..... .... ..
T Consensus 2 ki~i~G~~~~GKSsli~~l~------~~~~----~~~~~~~~~~-------~~~~~-~~~~-----------------~~ 46 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYT------TGKF----PTEYVPTVFD-------NYSAT-VTVD-----------------GK 46 (171)
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCC----CCCCCCceee-------eeEEE-EEEC-----------------CE
Confidence 48999999999999999998 3322 1111111000 00000 0000 12
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHH----HHHHh---ccCCeeEEEEeCccCCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ----AQAFK---QSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~----~~~f~---~~~~i~~vVltK~D~~~~ 255 (494)
.+.+.++||||..... .+.. .....+|.+++|+|++........ ...+. ...|+ .+|.||+|....
T Consensus 47 ~~~l~~~D~~g~~~~~-----~~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~ 119 (171)
T cd00157 47 QVNLGLWDTAGQEEYD-----RLRP-LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPI-ILVGTKIDLRDD 119 (171)
T ss_pred EEEEEEEeCCCccccc-----ccch-hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCE-EEEEccHHhhhc
Confidence 4678999999976421 1111 112468999999998754332221 11222 12444 999999997544
Q ss_pred ccchhHHHHhcCCCeEEecccc--ccccccccCccchhhcccCCCCchHHHHHHHH
Q 011076 256 GGGALSAVAATKSPVIFIGTGE--HMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge--~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~ 309 (494)
.... ... +..-..+...+ .........+...+|+..|.| ++++++.+.+
T Consensus 120 ~~~~-~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~i~~ 170 (171)
T cd00157 120 ENTL-KKL---EKGKEPITPEEGEKLAKEIGAIGYMECSALTQEG-VKEVFEEAIR 170 (171)
T ss_pred hhhh-hhc---ccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCC-HHHHHHHHhh
Confidence 2211 000 00000000001 111111122456689999999 9999988754
No 222
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.78 E-value=2.7e-08 Score=105.98 Aligned_cols=67 Identities=19% Similarity=0.294 Sum_probs=40.5
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCC--ccc--HHHHHHHHh-ccCCeeEEEEeCccCCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSI--GQA--AFDQAQAFK-QSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~--g~~--~~~~~~~f~-~~~~i~~vVltK~D~~~ 254 (494)
+++.+.|+||||..... ..+ +..+..+|.+++|+|++. +.. ....+.... ...+...+|+||+|...
T Consensus 82 ~~~~i~liDtpG~~~~~----~~~--~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFV----KNM--ITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVN 153 (425)
T ss_pred CCeEEEEEECCCcccch----hhH--hhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcccccc
Confidence 47889999999964322 222 122346899999999986 432 112222111 12233478999999864
No 223
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.78 E-value=4.3e-08 Score=88.50 Aligned_cols=106 Identities=19% Similarity=0.128 Sum_probs=58.5
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhc----cCCeeEEEEeCccCCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~----~~~i~~vVltK~D~~~~ 255 (494)
.+.+.++||||..... .+.. .....+|.+++|+|.+....... ....+.. ..+ ..+|+||+|....
T Consensus 48 ~~~~~~~D~~g~~~~~-----~~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~D~~~~ 120 (162)
T cd04123 48 RIDLAIWDTAGQERYH-----ALGP-IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNIS-LVIVGNKIDLERQ 120 (162)
T ss_pred EEEEEEEECCchHHHH-----HhhH-HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccc
Confidence 3467899999964221 1111 11236899999999875432211 1122221 233 4889999998633
Q ss_pred ccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
.....+... +....+ ..+...+|+..|.| ++.+++.+.+.
T Consensus 121 ~~~~~~~~~------------~~~~~~--~~~~~~~s~~~~~g-i~~~~~~l~~~ 160 (162)
T cd04123 121 RVVSKSEAE------------EYAKSV--GAKHFETSAKTGKG-IEELFLSLAKR 160 (162)
T ss_pred cCCCHHHHH------------HHHHHc--CCEEEEEeCCCCCC-HHHHHHHHHHH
Confidence 211111110 000011 12345789999999 99999988654
No 224
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.77 E-value=9.3e-08 Score=89.82 Aligned_cols=109 Identities=18% Similarity=0.199 Sum_probs=60.3
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHh---c--cCCeeEEEEeCccCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK---Q--SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~---~--~~~i~~vVltK~D~~~ 254 (494)
++.+.++||||..... .+.. .....+|.+++|+|++....... ....+. . ..|+ .+|+||+|...
T Consensus 51 ~~~l~l~Dt~G~~~~~-~~~~-----~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~-iiv~NK~D~~~ 123 (183)
T cd04152 51 GITFHFWDVGGQEKLR-PLWK-----SYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPV-LVLANKQDLPN 123 (183)
T ss_pred ceEEEEEECCCcHhHH-HHHH-----HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcE-EEEEECcCccc
Confidence 4678999999974221 1111 11346899999999876432111 111111 1 2344 99999999753
Q ss_pred CccchhHHHHhcCCCeEEecccccccccccc--CccchhhcccCCCCchHHHHHHHHhC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVF--DVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f--~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
... .-...... .+.++..+ .+...+|+..|.| ++.+++.+.+.+
T Consensus 124 ~~~-~~~~~~~~-----------~~~~~~~~~~~~~~~~SA~~~~g-i~~l~~~l~~~l 169 (183)
T cd04152 124 ALS-VSEVEKLL-----------ALHELSASTPWHVQPACAIIGEG-LQEGLEKLYEMI 169 (183)
T ss_pred cCC-HHHHHHHh-----------CccccCCCCceEEEEeecccCCC-HHHHHHHHHHHH
Confidence 210 00111000 01111111 2345689999999 999999987665
No 225
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.76 E-value=5.9e-08 Score=92.48 Aligned_cols=153 Identities=18% Similarity=0.175 Sum_probs=83.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|++||||||+++.++ +.+. .+.+.+ ..++.+....... ..
T Consensus 7 ~kivvvG~~~vGKTsli~~l~------~~~~----~~~~~~-----------t~~~~~~~~~~~~-------------~~ 52 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFA------DNTF----SGSYIT-----------TIGVDFKIRTVEI-------------NG 52 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHh------cCCC----CCCcCc-----------cccceeEEEEEEE-------------CC
Confidence 469999999999999999998 3322 011111 0111111000000 00
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhc---cCCeeEEEEeCccCCCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ---SVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~---~~~i~~vVltK~D~~~~ 255 (494)
..+.+.|+||||..... .+. ......++.+++|+|++......+ ....+.. ..++ .+|.||+|....
T Consensus 53 ~~~~l~l~D~~G~~~~~-----~~~-~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~pi-ivVgNK~Dl~~~ 125 (199)
T cd04110 53 ERVKLQIWDTAGQERFR-----TIT-STYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCK-VLVGNKNDDPER 125 (199)
T ss_pred EEEEEEEEeCCCchhHH-----HHH-HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCE-EEEEECcccccc
Confidence 13467899999964322 111 112345788999999875432211 2222222 2344 889999998543
Q ss_pred ccchhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
........ +.. ..+. .+...+|+..|.| ++.+++.+.+.+
T Consensus 126 ~~~~~~~~-------------~~~~~~~~--~~~~e~Sa~~~~g-i~~lf~~l~~~~ 166 (199)
T cd04110 126 KVVETEDA-------------YKFAGQMG--ISLFETSAKENIN-VEEMFNCITELV 166 (199)
T ss_pred cccCHHHH-------------HHHHHHcC--CEEEEEECCCCcC-HHHHHHHHHHHH
Confidence 21111111 001 0111 2345689999999 999999887765
No 226
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.76 E-value=1e-07 Score=87.32 Aligned_cols=148 Identities=20% Similarity=0.151 Sum_probs=79.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|.+||||||+++++.. |..+ + +.|. .+..+... ...
T Consensus 2 kv~~~G~~~~GKTsli~~l~~-----~~~~---~---~~pt-----------~g~~~~~~-----------------~~~ 42 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKL-----GEIV---T---TIPT-----------IGFNVETV-----------------EYK 42 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhc-----CCCc---c---cCCC-----------CCcceEEE-----------------EEC
Confidence 388999999999999999861 2111 1 1110 01111000 012
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc---HHHHHHHH-hc----cCCeeEEEEeCccCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAF-KQ----SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~---~~~~~~~f-~~----~~~i~~vVltK~D~~~ 254 (494)
.+.+.|.||||...... +. -.....+|.+++|+|++.... .......+ .. ..|+ .+|.||.|...
T Consensus 43 ~~~~~l~D~~G~~~~~~-~~-----~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~NK~Dl~~ 115 (159)
T cd04150 43 NISFTVWDVGGQDKIRP-LW-----RHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVL-LVFANKQDLPN 115 (159)
T ss_pred CEEEEEEECCCCHhHHH-HH-----HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCE-EEEEECCCCCC
Confidence 46789999999753221 11 122357899999999975321 11112211 11 2344 89999999853
Q ss_pred CccchhHHHHhcCCCeEEecccccccccc-ccCccchhhcccCCCCchHHHHHHHH
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHE 309 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~-~f~p~~~vs~~~G~Gdi~~L~e~i~~ 309 (494)
... ...+....+. ..+. .......+|++.|.| ++++++++.+
T Consensus 116 ~~~-~~~i~~~~~~-----------~~~~~~~~~~~~~Sak~g~g-v~~~~~~l~~ 158 (159)
T cd04150 116 AMS-AAEVTDKLGL-----------HSLRNRNWYIQATCATSGDG-LYEGLDWLSN 158 (159)
T ss_pred CCC-HHHHHHHhCc-----------cccCCCCEEEEEeeCCCCCC-HHHHHHHHhc
Confidence 311 1112211111 1111 011223579999999 9999887743
No 227
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.76 E-value=7e-08 Score=87.63 Aligned_cols=104 Identities=12% Similarity=0.115 Sum_probs=58.1
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHh---ccCCeeEEEEeCccCCCCc
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK---QSVSVGAVIVTKMDGHAKG 256 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~---~~~~i~~vVltK~D~~~~~ 256 (494)
.+++.|+||||..... .+. ......++.+++|.|++....... ....+. ...|+ .+|.||+|.....
T Consensus 50 ~~~~~i~D~~G~~~~~-----~~~-~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~-iiv~nK~Dl~~~~ 122 (162)
T cd04106 50 DVRLMLWDTAGQEEFD-----AIT-KAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPM-VLVQTKIDLLDQA 122 (162)
T ss_pred EEEEEEeeCCchHHHH-----HhH-HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEChhccccc
Confidence 4678999999964221 111 112346889999999875432111 112222 23455 8999999985432
Q ss_pred cchhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHH
Q 011076 257 GGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (494)
Q Consensus 257 g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~ 309 (494)
....... +.+ ..+. .|...+|+..|.| ++.+++.+.+
T Consensus 123 ~v~~~~~-------------~~~~~~~~--~~~~~~Sa~~~~~-v~~l~~~l~~ 160 (162)
T cd04106 123 VITNEEA-------------EALAKRLQ--LPLFRTSVKDDFN-VTELFEYLAE 160 (162)
T ss_pred CCCHHHH-------------HHHHHHcC--CeEEEEECCCCCC-HHHHHHHHHH
Confidence 2111111 001 1111 1345688889988 8888887754
No 228
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.76 E-value=4.4e-08 Score=93.36 Aligned_cols=108 Identities=12% Similarity=0.018 Sum_probs=60.4
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHH---HHHHh--------ccCCeeEEEEeCcc
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ---AQAFK--------QSVSVGAVIVTKMD 251 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~---~~~f~--------~~~~i~~vVltK~D 251 (494)
.+.+.|.||||..... .+. -.....++.+++|.|.+........ ...+. ..+|+ .+|.||.|
T Consensus 49 ~~~l~l~Dt~G~~~~~-----~~~-~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~pi-ilv~NK~D 121 (201)
T cd04107 49 VVRLQLWDIAGQERFG-----GMT-RVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPC-LLLANKCD 121 (201)
T ss_pred EEEEEEEECCCchhhh-----hhH-HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcE-EEEEECCC
Confidence 4678899999974321 111 1123468999999998754321111 11111 12344 89999999
Q ss_pred CCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 252 GHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 252 ~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
............ +.+.....+.+...+|+..|.| ++.+++.+.+.+
T Consensus 122 l~~~~~~~~~~~-------------~~~~~~~~~~~~~e~Sak~~~~-v~e~f~~l~~~l 167 (201)
T cd04107 122 LKKRLAKDGEQM-------------DQFCKENGFIGWFETSAKEGIN-IEEAMRFLVKNI 167 (201)
T ss_pred cccccccCHHHH-------------HHHHHHcCCceEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 853211111111 0110111123445689999999 999999887665
No 229
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.75 E-value=1.3e-07 Score=106.85 Aligned_cols=128 Identities=20% Similarity=0.118 Sum_probs=68.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc-ccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA-DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~-D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
-+.|+++|.+|+|||||+++|........ ++.-++. ++++-..-+.-. .++.+.... ..+
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~-~~~~~~~g~~~~D~~~~e~~-----rgiti~~~~-------------~~~ 70 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIH-KIGEVHDGAATMDWMEQEKE-----RGITITSAA-------------TTV 70 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCcc-ccccccCCccccCCCHHHHh-----cCCCEecce-------------EEE
Confidence 35799999999999999999985332110 1110110 000000000001 111111000 011
Q ss_pred hccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH--HHHHHHh-ccCCeeEEEEeCccCCC
Q 011076 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAFK-QSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~--~~~~~f~-~~~~i~~vVltK~D~~~ 254 (494)
...++.+.|+||||...... +.. ......|.+++|+|+..+.... ....... ...++ .+|+||+|...
T Consensus 71 ~~~~~~i~liDTPG~~~~~~----~~~--~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviNK~D~~~ 141 (689)
T TIGR00484 71 FWKGHRINIIDTPGHVDFTV----EVE--RSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPR-IAFVNKMDKTG 141 (689)
T ss_pred EECCeEEEEEECCCCcchhH----HHH--HHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCE-EEEEECCCCCC
Confidence 12478899999999975322 221 2233469999999998764432 2333222 23454 88999999864
No 230
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.74 E-value=3.8e-08 Score=90.19 Aligned_cols=104 Identities=14% Similarity=0.105 Sum_probs=60.4
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHHhc---cCCeeEEEEeCccCCCCc
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ---SVSVGAVIVTKMDGHAKG 256 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~~---~~~i~~vVltK~D~~~~~ 256 (494)
.+.+.|.||||...... +. -.....+|.+++|+|++...... .....+.+ ..|+ .+|.||+|.....
T Consensus 48 ~~~~~i~Dt~G~~~~~~-----~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~-ivv~nK~Dl~~~~ 120 (161)
T cd04124 48 TILVDFWDTAGQERFQT-----MH-ASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPC-IVVANKIDLDPSV 120 (161)
T ss_pred EEEEEEEeCCCchhhhh-----hh-HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcE-EEEEECccCchhH
Confidence 46778999999753221 11 11234689999999987543221 12223322 3444 8999999974321
Q ss_pred cchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 257 g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.... ....+ ....+...+|++.|.| ++.+++.+.+.+
T Consensus 121 ---~~~~-------------~~~~~-~~~~~~~~~Sa~~~~g-v~~l~~~l~~~~ 157 (161)
T cd04124 121 ---TQKK-------------FNFAE-KHNLPLYYVSAADGTN-VVKLFQDAIKLA 157 (161)
T ss_pred ---HHHH-------------HHHHH-HcCCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 0000 00000 0012446689999999 999999887654
No 231
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=98.73 E-value=1.3e-07 Score=77.84 Aligned_cols=70 Identities=30% Similarity=0.339 Sum_probs=55.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
++++.|.+|+||||++..|+.+|++.|++|++++
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~---------------------------------------------- 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID---------------------------------------------- 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC----------------------------------------------
Confidence 3788899999999999999999999999999888
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSI 225 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~ 225 (494)
|++|+|+++.......+ .......+|.+++|+++..
T Consensus 35 --d~iivD~~~~~~~~~~~-----~~~~~~~~~~vi~v~~~~~ 70 (99)
T cd01983 35 --DYVLIDTPPGLGLLVLL-----CLLALLAADLVIIVTTPEA 70 (99)
T ss_pred --CEEEEeCCCCccchhhh-----hhhhhhhCCEEEEecCCch
Confidence 77999999987544211 1122346788999998864
No 232
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.73 E-value=3.4e-08 Score=91.14 Aligned_cols=164 Identities=13% Similarity=0.115 Sum_probs=82.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|++||||||+++++. +..- .+.|.|...+ .....+.. . ..
T Consensus 3 ki~iiG~~~~GKTsl~~~~~------~~~~----~~~~~~t~~~-------~~~~~~~~--~----------------~~ 47 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFS------KDQF----PEVYVPTVFE-------NYVADIEV--D----------------GK 47 (175)
T ss_pred EEEEECCCCCCHHHHHHHHh------cCCC----CCCCCCcccc-------ceEEEEEE--C----------------CE
Confidence 59999999999999999888 2110 0112221000 00000000 0 12
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH----HHHHHh---ccCCeeEEEEeCccCCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFK---QSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~----~~~~f~---~~~~i~~vVltK~D~~~~ 255 (494)
.+.+.|+||||...... +.. ......|.+++|.|.+......+ ....+. ...|+ .+|.||+|....
T Consensus 48 ~~~l~i~Dt~G~~~~~~-----~~~-~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~ 120 (175)
T cd01870 48 QVELALWDTAGQEDYDR-----LRP-LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI-ILVGNKKDLRND 120 (175)
T ss_pred EEEEEEEeCCCchhhhh-----ccc-cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCE-EEEeeChhcccC
Confidence 46789999999743211 110 12245788888888764322111 112222 23455 899999997533
Q ss_pred ccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
....-.+......++.. ..|+.+..-....+...+|++.|.| ++.+++.+.+.
T Consensus 121 ~~~~~~i~~~~~~~v~~-~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~lf~~l~~~ 173 (175)
T cd01870 121 EHTRRELAKMKQEPVKP-EEGRDMANKIGAFGYMECSAKTKEG-VREVFEMATRA 173 (175)
T ss_pred hhhhhhhhhccCCCccH-HHHHHHHHHcCCcEEEEeccccCcC-HHHHHHHHHHH
Confidence 21111111101111111 1112221111122446789999999 99999988754
No 233
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.73 E-value=1.1e-07 Score=87.28 Aligned_cols=106 Identities=16% Similarity=0.132 Sum_probs=58.6
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHh-------ccCCeeEEEEeCccC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK-------QSVSVGAVIVTKMDG 252 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~-------~~~~i~~vVltK~D~ 252 (494)
.+.+.++||||...... +.. .....++.+++|.|.+....... ....+. ...|+ .+|.||+|.
T Consensus 48 ~~~l~i~Dt~G~~~~~~-----~~~-~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pi-ilv~nK~Dl 120 (165)
T cd04140 48 ICTLQITDTTGSHQFPA-----MQR-LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPI-MLVGNKCDE 120 (165)
T ss_pred EEEEEEEECCCCCcchH-----HHH-HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCE-EEEEECccc
Confidence 45778999999864321 111 12336788999999875442211 111121 12444 899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 253 ~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
........... ..... ..-.+...+|+..|.| +..+++.+.+.
T Consensus 121 ~~~~~v~~~~~-------------~~~~~-~~~~~~~e~SA~~g~~-v~~~f~~l~~~ 163 (165)
T cd04140 121 SHKREVSSNEG-------------AACAT-EWNCAFMETSAKTNHN-VQELFQELLNL 163 (165)
T ss_pred cccCeecHHHH-------------HHHHH-HhCCcEEEeecCCCCC-HHHHHHHHHhc
Confidence 54211000000 00000 0011234589999999 99999887643
No 234
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.73 E-value=1e-07 Score=100.68 Aligned_cols=126 Identities=21% Similarity=0.191 Sum_probs=70.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEE--cccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC--ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs--~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~ 178 (494)
...|+++|..++|||||++.|...+...|....... .|... +.-+...|..-..+ .
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~----~E~~rG~Ti~~~~~-~----------------- 69 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAP----EEKARGITINTAHV-E----------------- 69 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCH----HHHhcCcceeeEEE-E-----------------
Confidence 456999999999999999999866555444222111 11110 11112222211110 0
Q ss_pred HhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH--HHHHHHHh-ccCCeeEEEEeCccCCC
Q 011076 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFK-QSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 179 ~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~--~~~~~~f~-~~~~i~~vVltK~D~~~ 254 (494)
+...+..+.|+||||... +...+ +..+..+|.+++|+|+..|... .+.+.... ..++...+++||+|...
T Consensus 70 ~~~~~~~~~liDtpGh~~----f~~~~--~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 70 YETENRHYAHVDCPGHAD----YVKNM--ITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVD 142 (394)
T ss_pred EcCCCEEEEEEECCchHH----HHHHH--HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCC
Confidence 111356789999999753 22232 2334578999999999876322 22233222 23444346899999864
No 235
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.73 E-value=1.1e-07 Score=104.93 Aligned_cols=158 Identities=22% Similarity=0.254 Sum_probs=87.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
++.+|+++|.+|+||||++++|. +.++.--. .++ .++. +..+.....
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~------~~~v~~~e----~~G--------IT~~-ig~~~v~~~-------------- 132 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIR------KTKVAQGE----AGG--------ITQH-IGAYHVENE-------------- 132 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH------hCCccccc----CCc--------eeec-ceEEEEEEC--------------
Confidence 45689999999999999999997 44432111 000 0110 100100000
Q ss_pred hccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc--HHHHHHHHh-ccCCeeEEEEeCccCCCCc
Q 011076 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFK-QSVSVGAVIVTKMDGHAKG 256 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~--~~~~~~~f~-~~~~i~~vVltK~D~~~~~ 256 (494)
.+..+.|+||||...... +. ...+..+|.+++|+|+..|.. ..+.+.... ..+|+ .+++||+|.....
T Consensus 133 --~~~~i~~iDTPGhe~F~~-----~r-~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPi-IVviNKiDl~~~~ 203 (587)
T TIGR00487 133 --DGKMITFLDTPGHEAFTS-----MR-ARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPI-IVAINKIDKPEAN 203 (587)
T ss_pred --CCcEEEEEECCCCcchhh-----HH-HhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCE-EEEEECcccccCC
Confidence 122789999999764321 11 123446899999999986532 222232222 23454 8999999985321
Q ss_pred -cchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHH
Q 011076 257 -GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (494)
Q Consensus 257 -g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~ 309 (494)
......+...+. ....+....+..++|++.|.| +..|++.+..
T Consensus 204 ~e~v~~~L~~~g~---------~~~~~~~~~~~v~iSAktGeG-I~eLl~~I~~ 247 (587)
T TIGR00487 204 PDRVKQELSEYGL---------VPEDWGGDTIFVPVSALTGDG-IDELLDMILL 247 (587)
T ss_pred HHHHHHHHHHhhh---------hHHhcCCCceEEEEECCCCCC-hHHHHHhhhh
Confidence 111122211110 001111123456799999999 9999988753
No 236
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.72 E-value=7.9e-08 Score=96.66 Aligned_cols=104 Identities=24% Similarity=0.272 Sum_probs=65.3
Q ss_pred CCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHH
Q 011076 92 PSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRI 171 (494)
Q Consensus 92 ~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i 171 (494)
.+|...+..-..++|||+|+|||||++++|. +-+.-+.+. +++|..-+|-.-.+
T Consensus 54 ~gf~V~KsGda~v~lVGfPsvGKStLL~~LT------nt~seva~y------------~FTTl~~VPG~l~Y-------- 107 (365)
T COG1163 54 SGFAVKKSGDATVALVGFPSVGKSTLLNKLT------NTKSEVADY------------PFTTLEPVPGMLEY-------- 107 (365)
T ss_pred CcceEeccCCeEEEEEcCCCccHHHHHHHHh------CCCcccccc------------CceecccccceEee--------
Confidence 3455555455789999999999999999999 655544442 34444444322212
Q ss_pred HHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHH-HHHHhcCCCEEEEEecCCCcccHHH
Q 011076 172 AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMR-QVSEATNPDLVIFVMDSSIGQAAFD 231 (494)
Q Consensus 172 ~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~-~i~~~~~~d~vllVvDa~~g~~~~~ 231 (494)
++..+-|+|+||.......-...-. -+..+..+|.+++|+|+.......+
T Consensus 108 ----------~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~ 158 (365)
T COG1163 108 ----------KGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRD 158 (365)
T ss_pred ----------cCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHH
Confidence 3678889999998643221110011 1233557999999999986554343
No 237
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.72 E-value=8.5e-08 Score=105.96 Aligned_cols=62 Identities=23% Similarity=0.380 Sum_probs=38.8
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc--cHHHHHHHHhc-cCCeeEEEEeCccCC
Q 011076 185 DLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQ-SVSVGAVIVTKMDGH 253 (494)
Q Consensus 185 dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~--~~~~~~~~f~~-~~~i~~vVltK~D~~ 253 (494)
.+.|+||||...... +. ......+|.+++|+|++.|. .....+..+.. ..|+ .+++||+|..
T Consensus 72 ~i~~iDTPG~e~f~~-----~~-~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpi-IvviNK~D~~ 136 (586)
T PRK04004 72 GLLFIDTPGHEAFTN-----LR-KRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPF-VVAANKIDRI 136 (586)
T ss_pred CEEEEECCChHHHHH-----HH-HHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCE-EEEEECcCCc
Confidence 378999999754321 11 12234689999999998753 22223333322 3454 8999999975
No 238
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.72 E-value=9.3e-08 Score=105.73 Aligned_cols=176 Identities=20% Similarity=0.210 Sum_probs=92.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHh--cCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQK--KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~--~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
+.|+++|..++|||||+.+|.+.... +...+.--..|. ...-...++.+..... .+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~---------~~~ErerGiTI~~~~~-------------~v 59 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDS---------NDLERERGITILAKNT-------------AI 59 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccC---------chHHHhCCccEEeeeE-------------EE
Confidence 35999999999999999999854321 111111000111 0011112332221110 01
Q ss_pred hccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH--HHHHH-HhccCCeeEEEEeCccCCC-C
Q 011076 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQA-FKQSVSVGAVIVTKMDGHA-K 255 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~--~~~~~-f~~~~~i~~vVltK~D~~~-~ 255 (494)
...++.+.||||||..... .++... ...+|.+++|+|+..|.... ..+.. ....+++ .+|+||+|... +
T Consensus 60 ~~~~~kinlIDTPGh~DF~----~ev~~~--l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~-IVviNKiD~~~a~ 132 (594)
T TIGR01394 60 RYNGTKINIVDTPGHADFG----GEVERV--LGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKP-IVVINKIDRPSAR 132 (594)
T ss_pred EECCEEEEEEECCCHHHHH----HHHHHH--HHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCE-EEEEECCCCCCcC
Confidence 1246788999999975432 233222 23579999999998764322 12222 2233565 89999999843 2
Q ss_pred ccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCC---------CchHHHHHHHHhCCC
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMG---------DWSGFMDKIHEVVPM 313 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~G---------di~~L~e~i~~~~~~ 313 (494)
....++..... |...|.. ++ ....|..++|+..|.+ ++..|++.+.+.+|.
T Consensus 133 ~~~v~~ei~~l-----~~~~g~~-~e-~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 133 PDEVVDEVFDL-----FAELGAD-DE-QLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred HHHHHHHHHHH-----HHhhccc-cc-cccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 22222211100 0000100 01 1113556777777752 388999999998863
No 239
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.72 E-value=3e-08 Score=110.80 Aligned_cols=67 Identities=22% Similarity=0.283 Sum_probs=41.4
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH--HHHHHHHhc-cCCeeEEEEeCccCCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~--~~~~~~f~~-~~~i~~vVltK~D~~~ 254 (494)
.+..++||||||... +...+. ..+..+|.+++|+|+..|... .+.+..... ..+...+|+||+|...
T Consensus 102 ~~~~~~liDtPG~~~----f~~~~~--~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 102 PKRKFIVADTPGHEQ----YTRNMV--TGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVD 171 (632)
T ss_pred CCceEEEEECCChHH----HHHHHH--HHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEeccccc
Confidence 467899999999642 222222 234578999999999866422 122222111 2233477999999864
No 240
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.72 E-value=7.9e-08 Score=90.75 Aligned_cols=106 Identities=13% Similarity=0.080 Sum_probs=57.8
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHHh---c----cCCeeEEEEeCccCC
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFK---Q----SVSVGAVIVTKMDGH 253 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f~---~----~~~i~~vVltK~D~~ 253 (494)
+.+.|+||||...... +.. .....+|.+++|.|.+..... ......+. . ..|+ .+|.||+|..
T Consensus 47 ~~l~i~Dt~G~~~~~~-----~~~-~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pi-ilvgNK~Dl~ 119 (190)
T cd04144 47 CMLEVLDTAGQEEYTA-----LRD-QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPI-MIVGNKCDKV 119 (190)
T ss_pred EEEEEEECCCchhhHH-----HHH-HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCE-EEEEEChhcc
Confidence 4578999999643221 111 123367999999998754321 11222221 1 2344 8899999985
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
........... +....+. .+...+|+..|.| +..+++.+.+.+
T Consensus 120 ~~~~v~~~~~~------------~~~~~~~--~~~~e~SAk~~~~-v~~l~~~l~~~l 162 (190)
T cd04144 120 YEREVSTEEGA------------ALARRLG--CEFIEASAKTNVN-VERAFYTLVRAL 162 (190)
T ss_pred ccCccCHHHHH------------HHHHHhC--CEEEEecCCCCCC-HHHHHHHHHHHH
Confidence 32110000000 0001111 1345689999999 999888886543
No 241
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.72 E-value=2.1e-08 Score=92.47 Aligned_cols=120 Identities=14% Similarity=0.124 Sum_probs=63.0
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHH----HHHHh---ccCCeeEEEEeCccCCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ----AQAFK---QSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~----~~~f~---~~~~i~~vVltK~D~~~~ 255 (494)
.+.+.|+||||...... +.. .....+|.+++|.|.+......+. ...+. ...|+ .+|.||+|....
T Consensus 45 ~~~~~i~Dt~G~~~~~~-----~~~-~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ilv~nK~Dl~~~ 117 (174)
T smart00174 45 PVELGLWDTAGQEDYDR-----LRP-LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPI-ILVGTKLDLRED 117 (174)
T ss_pred EEEEEEEECCCCcccch-----hch-hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCE-EEEecChhhhhC
Confidence 46789999999753221 111 123367999999998754322221 11222 23455 999999998653
Q ss_pred ccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.............+|. ...++.+..-..+.+...+|++.|.| ++++++.+.+.+
T Consensus 118 ~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~e~Sa~~~~~-v~~lf~~l~~~~ 171 (174)
T smart00174 118 KSTLRELSKQKQEPVT-YEQGEALAKRIGAVKYLECSALTQEG-VREVFEEAIRAA 171 (174)
T ss_pred hhhhhhhhcccCCCcc-HHHHHHHHHHcCCcEEEEecCCCCCC-HHHHHHHHHHHh
Confidence 2211111110011110 00111121111122345589999999 999999887653
No 242
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.72 E-value=4.2e-08 Score=100.62 Aligned_cols=148 Identities=17% Similarity=0.222 Sum_probs=84.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceec-------cCCCCChHHHHHH
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG-------SYTESDPVRIAVE 174 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~-------~~~~~dp~~i~~~ 174 (494)
.+.++.|.-||||||++++|... ..|++++++-+|....+--.++-.. ...+++. +....+......+
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~--~~~~riaVi~NEfG~v~iD~~ll~~---~~~~v~eL~~GCiCCs~~~~l~~~l~~ 79 (318)
T PRK11537 5 AVTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEFGEVSVDDQLIGD---RATQIKTLTNGCICCSRSNELEDALLD 79 (318)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc--ccCCcccccccCcCCccccHHHHhC---cCceEEEECCCEEEEccCchHHHHHHH
Confidence 47899999999999999999854 3589999999987644332222211 1111111 1112222222333
Q ss_pred HHHHHhc--cCCcEEEEeCCCCCchhHHHHHHHH---HHHHhcCCCEEEEEecCCCcccHHHHHHHHhccC-CeeEEEEe
Q 011076 175 GVETFKK--ENCDLIIVDTSGRHKQEAALFEEMR---QVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV-SVGAVIVT 248 (494)
Q Consensus 175 ~l~~~~~--~~~dvIIIDTaG~~~~~~~l~~el~---~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~-~i~~vVlt 248 (494)
.+..... ..+|+|+|.|.|..... .+.+.+. .+.....-+.++.|+|+.......+....+...+ .-+.+|+|
T Consensus 80 l~~~~~~~~~~~d~IvIEttG~a~p~-~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~AD~Ivln 158 (318)
T PRK11537 80 LLDNLDKGNIQFDRLVIECTGMADPG-PIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLT 158 (318)
T ss_pred HHHHHhccCCCCCEEEEECCCccCHH-HHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhCCEEEEe
Confidence 2322222 25999999999998644 3333321 2222334577999999975433222111121221 23689999
Q ss_pred CccCCCC
Q 011076 249 KMDGHAK 255 (494)
Q Consensus 249 K~D~~~~ 255 (494)
|+|....
T Consensus 159 K~Dl~~~ 165 (318)
T PRK11537 159 KTDVAGE 165 (318)
T ss_pred ccccCCH
Confidence 9998754
No 243
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.71 E-value=5.4e-08 Score=105.11 Aligned_cols=65 Identities=29% Similarity=0.332 Sum_probs=41.4
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH--HH---HHHHHhccCCeeEEEEeCccCCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FD---QAQAFKQSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~--~~---~~~~f~~~~~i~~vVltK~D~~~ 254 (494)
+++.++||||||.. .+..++. ..+..+|.+++|+|+..|... .+ .+..+. .+..++++||+|...
T Consensus 105 ~~~~i~~iDTPGh~----~f~~~~~--~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg--~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 105 EKRKFIIADTPGHE----QYTRNMA--TGASTCDLAILLIDARKGVLDQTRRHSFIATLLG--IKHLVVAVNKMDLVD 174 (474)
T ss_pred CCcEEEEEECCCcH----HHHHHHH--HHHhhCCEEEEEEECCCCccccchHHHHHHHHhC--CCceEEEEEeecccc
Confidence 46789999999943 2333332 234578999999999876422 11 222222 333478999999864
No 244
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.71 E-value=1.1e-07 Score=105.18 Aligned_cols=108 Identities=16% Similarity=0.181 Sum_probs=66.8
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhccCCeeEEEEeCccCCCCc-cc
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQSVSVGAVIVTKMDGHAKG-GG 258 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~~~~i~~vVltK~D~~~~~-g~ 258 (494)
.+.+.|+||||...... +... ....+|.+++|+|++.+..... ........+++ .+|+||+|..... ..
T Consensus 69 ~~~l~liDTPG~~dF~~----~v~~--~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipi-IiViNKiDl~~~~~~~ 141 (595)
T TIGR01393 69 TYVLNLIDTPGHVDFSY----EVSR--SLAACEGALLLVDAAQGIEAQTLANVYLALENDLEI-IPVINKIDLPSADPER 141 (595)
T ss_pred EEEEEEEECCCcHHHHH----HHHH--HHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCE-EEEEECcCCCccCHHH
Confidence 46789999999975432 2221 2335799999999987643322 12223334554 8999999985321 11
Q ss_pred hh-HHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCCC
Q 011076 259 AL-SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (494)
Q Consensus 259 ~l-s~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~ 313 (494)
.. .+....+. .+.+..++|+..|.| ++.|++.+.+.++.
T Consensus 142 ~~~el~~~lg~---------------~~~~vi~vSAktG~G-I~~Lle~I~~~lp~ 181 (595)
T TIGR01393 142 VKKEIEEVIGL---------------DASEAILASAKTGIG-IEEILEAIVKRVPP 181 (595)
T ss_pred HHHHHHHHhCC---------------CcceEEEeeccCCCC-HHHHHHHHHHhCCC
Confidence 11 11111111 112346799999999 99999999988863
No 245
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.71 E-value=1.7e-07 Score=88.20 Aligned_cols=151 Identities=17% Similarity=0.095 Sum_probs=82.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|++||||||+++++.. |..+. +-| + .+..+.. . ..
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~-----~~~~~------~~~---------T--~~~~~~~-~----------------~~ 58 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKL-----GEVVT------TIP---------T--IGFNVET-V----------------EY 58 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhc-----CCccc------cCC---------c--cccceEE-E----------------EE
Confidence 3599999999999999999861 22111 101 0 0111100 0 01
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHH-hc----cCCeeEEEEeCccCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAF-KQ----SVSVGAVIVTKMDGH 253 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f-~~----~~~i~~vVltK~D~~ 253 (494)
.++.+.|+||||...... + .......+|.+++|+|++..... ......+ .. ..+ ..+|.||.|..
T Consensus 59 ~~~~~~l~D~~G~~~~~~-~-----~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~ 131 (182)
T PTZ00133 59 KNLKFTMWDVGGQDKLRP-L-----WRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAV-LLVFANKQDLP 131 (182)
T ss_pred CCEEEEEEECCCCHhHHH-H-----HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCC-EEEEEeCCCCC
Confidence 257789999999753221 1 11224478999999998753211 1112222 11 134 48899999975
Q ss_pred CCccchhHHHHhcCCCeEEecccccccccccc-CccchhhcccCCCCchHHHHHHHHhC
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVF-DVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f-~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.... ...+....+. +.+... .+...+|+..|.| ++++++.+.+.+
T Consensus 132 ~~~~-~~~i~~~l~~-----------~~~~~~~~~~~~~Sa~tg~g-v~e~~~~l~~~i 177 (182)
T PTZ00133 132 NAMS-TTEVTEKLGL-----------HSVRQRNWYIQGCCATTAQG-LYEGLDWLSANI 177 (182)
T ss_pred CCCC-HHHHHHHhCC-----------CcccCCcEEEEeeeCCCCCC-HHHHHHHHHHHH
Confidence 3211 1122222221 111111 1122469999999 999999987654
No 246
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.70 E-value=1.2e-07 Score=106.48 Aligned_cols=164 Identities=21% Similarity=0.248 Sum_probs=89.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHH
Q 011076 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (494)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~ 178 (494)
.++.+|+++|.+|+||||++++|. +..+..- +.+ ..++ .+.++......
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~------~~~~~~~-----e~~-------GiTq-~i~~~~v~~~~------------ 290 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIR------KTQIAQK-----EAG-------GITQ-KIGAYEVEFEY------------ 290 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHH------hccCccc-----cCC-------cccc-ccceEEEEEEe------------
Confidence 356789999999999999999997 3222210 000 0000 00011100000
Q ss_pred HhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc--HHHHHHHHhc-cCCeeEEEEeCccCCCC
Q 011076 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQ-SVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 179 ~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~--~~~~~~~f~~-~~~i~~vVltK~D~~~~ 255 (494)
...++.+.|+||||..... . +. ...+..+|.+++|+|+..|.. ..+.+..... .+| .++|+||+|....
T Consensus 291 -~~~~~kItfiDTPGhe~F~----~-mr-~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iP-iIVViNKiDl~~~ 362 (742)
T CHL00189 291 -KDENQKIVFLDTPGHEAFS----S-MR-SRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVP-IIVAINKIDKANA 362 (742)
T ss_pred -cCCceEEEEEECCcHHHHH----H-HH-HHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCce-EEEEEECCCcccc
Confidence 0024788999999964321 1 11 123346899999999987632 2233333322 245 4899999998542
Q ss_pred c-cchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 256 G-GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 256 ~-g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
. ......+...+. -..++....|..++|+..|.| +..|++.+....
T Consensus 363 ~~e~v~~eL~~~~l---------l~e~~g~~vpvv~VSAktG~G-IdeLle~I~~l~ 409 (742)
T CHL00189 363 NTERIKQQLAKYNL---------IPEKWGGDTPMIPISASQGTN-IDKLLETILLLA 409 (742)
T ss_pred CHHHHHHHHHHhcc---------chHhhCCCceEEEEECCCCCC-HHHHHHhhhhhh
Confidence 1 111111111100 001112234667899999999 999999886643
No 247
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.70 E-value=1.3e-07 Score=103.16 Aligned_cols=130 Identities=15% Similarity=0.253 Sum_probs=69.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc---ccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA---DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~---D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~ 177 (494)
.+.|+++|.+|+||||++.+|..+... -.+..-|.. +.+....+..+ ....++.+.... .
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~-i~~~g~v~~~~~~~~~~~D~~~~---E~~rgiSi~~~~-------------~ 72 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGA-IQEAGTVKGRKSGRHATSDWMEM---EKQRGISVTSSV-------------M 72 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCC-ccccceeeccccCccccCCCcHH---HHhhCCceeeee-------------E
Confidence 457999999999999999999854321 112222221 11110011111 111122221110 0
Q ss_pred HHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH--HHHHHHh-ccCCeeEEEEeCccCCC
Q 011076 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAFK-QSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 178 ~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~--~~~~~f~-~~~~i~~vVltK~D~~~ 254 (494)
.+...++.+.++||||.......... ....+|.+++|+|++.+.... ....... ..+|+ .+++||+|...
T Consensus 73 ~~~~~~~~inliDTPG~~df~~~~~~------~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPi-iv~iNK~D~~~ 145 (526)
T PRK00741 73 QFPYRDCLINLLDTPGHEDFSEDTYR------TLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPI-FTFINKLDRDG 145 (526)
T ss_pred EEEECCEEEEEEECCCchhhHHHHHH------HHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCE-EEEEECCcccc
Confidence 11124678999999998543322211 123579999999998764432 1222111 23554 89999999754
No 248
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.70 E-value=2.2e-07 Score=87.36 Aligned_cols=150 Identities=18% Similarity=0.145 Sum_probs=81.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|.+||||||+++++.. +.-+ . +.|. .++.+.. ...+
T Consensus 19 ki~ivG~~~~GKTsl~~~l~~-----~~~~---~---~~pt-----------~g~~~~~-----------------~~~~ 59 (181)
T PLN00223 19 RILMVGLDAAGKTTILYKLKL-----GEIV---T---TIPT-----------IGFNVET-----------------VEYK 59 (181)
T ss_pred EEEEECCCCCCHHHHHHHHcc-----CCCc---c---ccCC-----------cceeEEE-----------------EEEC
Confidence 599999999999999998861 2111 1 1110 0111110 0013
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHH-hc----cCCeeEEEEeCccCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAF-KQ----SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f-~~----~~~i~~vVltK~D~~~ 254 (494)
++.+.|.||||..... .+ .......+|.+++|+|++......+ ....+ .. ..|+ .+|.||.|...
T Consensus 60 ~~~~~i~D~~Gq~~~~-----~~-~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~pi-ilv~NK~Dl~~ 132 (181)
T PLN00223 60 NISFTVWDVGGQDKIR-----PL-WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL-LVFANKQDLPN 132 (181)
T ss_pred CEEEEEEECCCCHHHH-----HH-HHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCE-EEEEECCCCCC
Confidence 5678999999964321 11 1112346899999999985432211 12222 11 2344 89999999754
Q ss_pred CccchhHHHHhcCCCeEEeccccccccccccC-ccchhhcccCCCCchHHHHHHHHhC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFD-VKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~-p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
... .-.+....+. +.+.+-. ....+|+..|.| ++++++.+.+.+
T Consensus 133 ~~~-~~~~~~~l~l-----------~~~~~~~~~~~~~Sa~~g~g-v~e~~~~l~~~~ 177 (181)
T PLN00223 133 AMN-AAEITDKLGL-----------HSLRQRHWYIQSTCATSGEG-LYEGLDWLSNNI 177 (181)
T ss_pred CCC-HHHHHHHhCc-----------cccCCCceEEEeccCCCCCC-HHHHHHHHHHHH
Confidence 321 1122211111 1111100 122369999999 999999886654
No 249
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.69 E-value=1.1e-07 Score=86.83 Aligned_cols=106 Identities=13% Similarity=0.103 Sum_probs=59.3
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHHh-----ccCCeeEEEEeCccCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFK-----QSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f~-----~~~~i~~vVltK~D~~~ 254 (494)
.+.+.|+||||...... +.. ......|.+++|.|.+..... .+....+. ...|+ .+|.||+|...
T Consensus 48 ~~~l~i~Dt~G~~~~~~-~~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~ 120 (164)
T cd04175 48 QCMLEILDTAGTEQFTA-MRD-----LYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPM-ILVGNKCDLED 120 (164)
T ss_pred EEEEEEEECCCcccchh-HHH-----HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECCcchh
Confidence 45667999999754321 111 122357889999998643221 11122221 12454 89999999854
Q ss_pred CccchhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
......... +.+ ..+. .+...+|+..|.| ++.+++.+.+.+
T Consensus 121 ~~~~~~~~~-------------~~~~~~~~--~~~~~~Sa~~~~~-v~~~~~~l~~~l 162 (164)
T cd04175 121 ERVVGKEQG-------------QNLARQWG--CAFLETSAKAKIN-VNEIFYDLVRQI 162 (164)
T ss_pred ccEEcHHHH-------------HHHHHHhC--CEEEEeeCCCCCC-HHHHHHHHHHHh
Confidence 321111100 111 0111 2446789999999 999999887654
No 250
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.69 E-value=1.3e-07 Score=104.82 Aligned_cols=108 Identities=19% Similarity=0.200 Sum_probs=66.6
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH--HH-HHHhccCCeeEEEEeCccCCCCc-cc
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD--QA-QAFKQSVSVGAVIVTKMDGHAKG-GG 258 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~--~~-~~f~~~~~i~~vVltK~D~~~~~-g~ 258 (494)
++.+.|+||||....... +... ...+|.+++|+|++.+..... .. ......+++ .+|+||+|..... ..
T Consensus 73 ~~~lnLiDTPGh~dF~~~----v~~s--l~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpi-IvViNKiDl~~a~~~~ 145 (600)
T PRK05433 73 TYILNLIDTPGHVDFSYE----VSRS--LAACEGALLVVDASQGVEAQTLANVYLALENDLEI-IPVLNKIDLPAADPER 145 (600)
T ss_pred cEEEEEEECCCcHHHHHH----HHHH--HHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEEEECCCCCcccHHH
Confidence 577899999999754322 2222 235789999999987744322 12 222234554 8999999975321 11
Q ss_pred hhH-HHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCCC
Q 011076 259 ALS-AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (494)
Q Consensus 259 ~ls-~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~ 313 (494)
... +....+. +.....++|++.|.| ++.|++.+.+.++.
T Consensus 146 v~~ei~~~lg~---------------~~~~vi~iSAktG~G-I~~Ll~~I~~~lp~ 185 (600)
T PRK05433 146 VKQEIEDVIGI---------------DASDAVLVSAKTGIG-IEEVLEAIVERIPP 185 (600)
T ss_pred HHHHHHHHhCC---------------CcceEEEEecCCCCC-HHHHHHHHHHhCcc
Confidence 111 1111111 012246789999999 99999999988863
No 251
>PRK10218 GTP-binding protein; Provisional
Probab=98.68 E-value=1.6e-07 Score=104.03 Aligned_cols=174 Identities=20% Similarity=0.221 Sum_probs=93.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHh--cCCce--EEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK--KGWKP--ALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGV 176 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~--~g~kV--aiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l 176 (494)
-+.|+++|..++|||||+.+|...... ....+ .+.+.++ .....++.+.....
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~-----------~E~erGiTi~~~~~------------ 61 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSND-----------LEKERGITILAKNT------------ 61 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeecccc-----------ccccCceEEEEEEE------------
Confidence 356999999999999999999843211 00000 1111111 01111222221110
Q ss_pred HHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH--HHHH-HHhccCCeeEEEEeCccCC
Q 011076 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQ-AFKQSVSVGAVIVTKMDGH 253 (494)
Q Consensus 177 ~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~--~~~~-~f~~~~~i~~vVltK~D~~ 253 (494)
.+...++.+.|+||||....... .. .....+|.+++|+|+..|.... ..+. .....+++ .+++||+|..
T Consensus 62 -~i~~~~~~inliDTPG~~df~~~----v~--~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~-IVviNKiD~~ 133 (607)
T PRK10218 62 -AIKWNDYRINIVDTPGHADFGGE----VE--RVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKP-IVVINKVDRP 133 (607)
T ss_pred -EEecCCEEEEEEECCCcchhHHH----HH--HHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCE-EEEEECcCCC
Confidence 01123678899999998654322 21 1234689999999998764322 1222 22334565 8999999974
Q ss_pred C-CccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCC---------CchHHHHHHHHhCC
Q 011076 254 A-KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMG---------DWSGFMDKIHEVVP 312 (494)
Q Consensus 254 ~-~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~G---------di~~L~e~i~~~~~ 312 (494)
. +....+...... |...+. .++ ....|..++|+..|.+ ++..|++.+.+.+|
T Consensus 134 ~a~~~~vl~ei~~l-----~~~l~~-~~~-~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 134 GARPDWVVDQVFDL-----FVNLDA-TDE-QLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred CCchhHHHHHHHHH-----HhccCc-ccc-ccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 2 222222221111 000000 000 1124567778888773 37899999999886
No 252
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.68 E-value=1.1e-07 Score=83.00 Aligned_cols=105 Identities=13% Similarity=-0.019 Sum_probs=60.1
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHH-------HHHhccCCeeEEEEeCccCCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQA-------QAFKQSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~-------~~f~~~~~i~~vVltK~D~~~~ 255 (494)
.+++.++||||........ ......+|.+++|+|++.+....... ........+..+|+||+|....
T Consensus 44 ~~~~~l~D~~g~~~~~~~~------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~ 117 (157)
T cd00882 44 KVKLQIWDTAGQERFRSLR------RLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE 117 (157)
T ss_pred EEEEEEEecCChHHHHhHH------HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc
Confidence 5688999999976433221 22334689999999998654322211 1111122234999999998654
Q ss_pred ccchhHH-HHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHH
Q 011076 256 GGGALSA-VAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIH 308 (494)
Q Consensus 256 ~g~~ls~-~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~ 308 (494)
....... .. . .......+...+|+..|.| +..+++++.
T Consensus 118 ~~~~~~~~~~-------------~-~~~~~~~~~~~~s~~~~~~-i~~~~~~l~ 156 (157)
T cd00882 118 RVVSEEELAE-------------Q-LAKELGVPYFETSAKTGEN-VEELFEELA 156 (157)
T ss_pred cchHHHHHHH-------------H-HHhhcCCcEEEEecCCCCC-hHHHHHHHh
Confidence 3222111 00 0 0011223456678888888 888887764
No 253
>PRK00007 elongation factor G; Reviewed
Probab=98.68 E-value=2.2e-07 Score=104.85 Aligned_cols=129 Identities=21% Similarity=0.169 Sum_probs=69.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
-+.|+++|.+|+|||||+++|..+..... ++.-++... +. .|.+. .-...++....... .+.
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~-~~g~v~~~~-~~--~D~~~-~E~~rg~ti~~~~~-------------~~~ 71 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNH-KIGEVHDGA-AT--MDWME-QEQERGITITSAAT-------------TCF 71 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCcc-ccccccCCc-cc--CCCCH-HHHhCCCCEeccEE-------------EEE
Confidence 35799999999999999999985443211 111121100 00 00000 00011111110000 111
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH--HHHHHHh-ccCCeeEEEEeCccCCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAFK-QSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~--~~~~~f~-~~~~i~~vVltK~D~~~ 254 (494)
..++.+.+|||||.... ..+.. ......|.+++|+|+..|.... ..+.... ...+. .+++||+|...
T Consensus 72 ~~~~~~~liDTPG~~~f----~~ev~--~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~-iv~vNK~D~~~ 141 (693)
T PRK00007 72 WKDHRINIIDTPGHVDF----TIEVE--RSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPR-IAFVNKMDRTG 141 (693)
T ss_pred ECCeEEEEEeCCCcHHH----HHHHH--HHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCE-EEEEECCCCCC
Confidence 23678999999997532 22222 2233468999999998774332 2333322 23455 79999999864
No 254
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.68 E-value=1.4e-07 Score=87.60 Aligned_cols=106 Identities=10% Similarity=0.072 Sum_probs=59.4
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhc-----cCCeeEEEEeCccCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ-----SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~-----~~~i~~vVltK~D~~~ 254 (494)
.+.+.|+||||..... .+. -.....+|.+++|.|++......+ ....+.. ..+ ..+|.||+|...
T Consensus 62 ~~~~~i~Dt~G~~~~~-----~~~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~ 134 (180)
T cd04127 62 RIHLQLWDTAGQERFR-----SLT-TAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPD-IVLCGNKADLED 134 (180)
T ss_pred EEEEEEEeCCChHHHH-----HHH-HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEeCccchh
Confidence 4567899999954221 111 112346899999999875433222 1222222 233 488999999854
Q ss_pred CccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
......+... +....+. .+...+|+..|.| ++++++.+.+.
T Consensus 135 ~~~v~~~~~~------------~~~~~~~--~~~~e~Sak~~~~-v~~l~~~l~~~ 175 (180)
T cd04127 135 QRQVSEEQAK------------ALADKYG--IPYFETSAATGTN-VEKAVERLLDL 175 (180)
T ss_pred cCccCHHHHH------------HHHHHcC--CeEEEEeCCCCCC-HHHHHHHHHHH
Confidence 2111111110 0001111 2446789999999 99999888654
No 255
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.68 E-value=1.6e-07 Score=106.37 Aligned_cols=158 Identities=20% Similarity=0.236 Sum_probs=89.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHH
Q 011076 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (494)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~ 178 (494)
.++.+|+++|..|+|||||++.|. +.++. +. .++ ..+. .+..+...
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr------~~~v~--~~-e~~---------GIT~-~iga~~v~--------------- 333 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIR------KTNVA--AG-EAG---------GITQ-HIGAYQVE--------------- 333 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH------hCCcc--cc-ccC---------ceee-eccEEEEE---------------
Confidence 457789999999999999999996 33332 11 000 0010 01111100
Q ss_pred HhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc--HHHHHHHHh-ccCCeeEEEEeCccCCCC
Q 011076 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFK-QSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 179 ~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~--~~~~~~~f~-~~~~i~~vVltK~D~~~~ 255 (494)
..++.+.|+||||...... +. ...+..+|.++||+|+..|.. ..+.+.... ..+|+ ++++||+|....
T Consensus 334 --~~~~~ItfiDTPGhe~F~~-----m~-~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPi-IVviNKiDl~~a 404 (787)
T PRK05306 334 --TNGGKITFLDTPGHEAFTA-----MR-ARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPI-IVAINKIDKPGA 404 (787)
T ss_pred --ECCEEEEEEECCCCccchh-----HH-HhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcE-EEEEECcccccc
Confidence 1246789999999764321 11 122345799999999987532 222222222 23554 899999998532
Q ss_pred c-cchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHH
Q 011076 256 G-GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (494)
Q Consensus 256 ~-g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~ 309 (494)
. ......+...+. ..+++....|..++|++.|.| +..|++.+..
T Consensus 405 ~~e~V~~eL~~~~~---------~~e~~g~~vp~vpvSAktG~G-I~eLle~I~~ 449 (787)
T PRK05306 405 NPDRVKQELSEYGL---------VPEEWGGDTIFVPVSAKTGEG-IDELLEAILL 449 (787)
T ss_pred CHHHHHHHHHHhcc---------cHHHhCCCceEEEEeCCCCCC-chHHHHhhhh
Confidence 1 111111111110 011122234667799999999 9999988864
No 256
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.68 E-value=9.6e-08 Score=101.27 Aligned_cols=67 Identities=21% Similarity=0.308 Sum_probs=41.7
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH--HHHHHHHhc-cCCeeEEEEeCccCCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~--~~~~~~f~~-~~~i~~vVltK~D~~~ 254 (494)
+++.+.|+||||... +..++. ..+..+|.+++|+|+..|... .+.+..... ..+...+++||+|...
T Consensus 78 ~~~~~~liDtPGh~~----f~~~~~--~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 78 DKRKFIVADTPGHEQ----YTRNMA--TGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVD 147 (406)
T ss_pred CCeEEEEEeCCCHHH----HHHHHH--HHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccccc
Confidence 467899999999643 323332 234578999999999876432 122222111 2333378999999864
No 257
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=98.67 E-value=4.1e-07 Score=90.79 Aligned_cols=145 Identities=19% Similarity=0.192 Sum_probs=81.5
Q ss_pred CeEEEEE-cCCCCcHHHHHHHH-HHHHHhcCCceEEEEcccCcchh-------------HHHHHhhhhc---------cC
Q 011076 101 PSVIMFV-GLQGSGKTTTCTKY-AYYHQKKGWKPALVCADTFRAGA-------------FDQLKQNATK---------AK 156 (494)
Q Consensus 101 ~~vI~lv-G~~GvGKTTl~~kL-A~~l~~~g~kVaiVs~D~~r~~a-------------~~qLk~~~~~---------~~ 156 (494)
+++|+++ |..|+||||++++| +..++..|++|+++|+|+..+.- .+-|...+.. .+
T Consensus 2 ~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~g 81 (262)
T COG0455 2 TKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQDG 81 (262)
T ss_pred CEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCcccHHHHHhCCCCHhHeeeecCcCC
Confidence 4578777 99999999999999 55555567888999999855322 2223322221 33
Q ss_pred cceeccCCCCC-h----HHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCc--ccH
Q 011076 157 IPFYGSYTESD-P----VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAA 229 (494)
Q Consensus 157 i~~~~~~~~~d-p----~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g--~~~ 229 (494)
+.+.+...... . .+.....++.+. ..+||||+|||+-...+. +.....+|.+++|..+... .++
T Consensus 82 l~vipg~~~~~~~~~~~~~~~~~~~~~l~-~~~D~iliD~~aGl~~~~--------~~~~~~sd~~viVt~pe~~si~~A 152 (262)
T COG0455 82 LYVLPGGSGLEDLAKLDPEDLEDVIKELE-ELYDYILIDTGAGLSRDT--------LSFILSSDELVIVTTPEPTSITDA 152 (262)
T ss_pred EEEeeCCCChHHHhhcCHHHHHHHHHHHH-hcCCEEEEeCCCCccHHH--------HHHHHhcCcEEEEeCCCcchHHHH
Confidence 33332221111 1 111233344444 356999999976654331 2222345888888876532 233
Q ss_pred HHHHHHHh-ccCCeeE--EEEeCccCCC
Q 011076 230 FDQAQAFK-QSVSVGA--VIVTKMDGHA 254 (494)
Q Consensus 230 ~~~~~~f~-~~~~i~~--vVltK~D~~~ 254 (494)
....+... ...+..+ +|+|+++...
T Consensus 153 ~~~i~~~~~~~~~~~~~~vV~N~v~~~~ 180 (262)
T COG0455 153 YKTIKILSKLGLDLLGRRVVLNRVRSTK 180 (262)
T ss_pred HHHHHHHHHcCCccccceEEEEeccccc
Confidence 33333222 2233334 9999998443
No 258
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.67 E-value=1.1e-07 Score=89.87 Aligned_cols=108 Identities=12% Similarity=0.034 Sum_probs=60.2
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHHhc----cCCeeEEEEeCccCCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f~~----~~~i~~vVltK~D~~~~ 255 (494)
.+.+.|+||||..... .+. ......+|.+++|+|++..... ......+.+ ..|+ .+|.||+|....
T Consensus 49 ~~~~~i~Dt~G~~~~~-----~~~-~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~pi-iiv~NK~Dl~~~ 121 (191)
T cd04112 49 KVKLQIWDTAGQERFR-----SVT-HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVI-MLLGNKADMSGE 121 (191)
T ss_pred EEEEEEEeCCCcHHHH-----Hhh-HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcE-EEEEEcccchhc
Confidence 3567899999963221 111 1123468999999998754221 111122221 2344 889999998532
Q ss_pred ccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
........ +.+... ...|...+|+..|.| ++.|++.+.+.+.
T Consensus 122 ~~~~~~~~-------------~~l~~~-~~~~~~e~Sa~~~~~-v~~l~~~l~~~~~ 163 (191)
T cd04112 122 RVVKREDG-------------ERLAKE-YGVPFMETSAKTGLN-VELAFTAVAKELK 163 (191)
T ss_pred cccCHHHH-------------HHHHHH-cCCeEEEEeCCCCCC-HHHHHHHHHHHHH
Confidence 11111111 111000 012446689999999 9999999987663
No 259
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.67 E-value=1.4e-07 Score=87.46 Aligned_cols=157 Identities=13% Similarity=0.088 Sum_probs=83.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.+. +.+.. .+.|.|.. .....+.... ..
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~------~~~f~---~~~~~~T~-------~~~~~~~~~~-~~---------------- 50 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFL------GRSFS---LNAYSPTI-------KPRYAVNTVE-VY---------------- 50 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHh------CCCCC---cccCCCcc-------CcceEEEEEE-EC----------------
Confidence 3458999999999999999998 43321 11222210 0000000000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhc--cCCeeEEEEeCccCCCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ--SVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~--~~~i~~vVltK~D~~~~ 255 (494)
...+.+.+.||+|...... +. -.....+|.+++|+|++....... ....+.. ..| ..+|.||+|....
T Consensus 51 ~~~~~l~~~d~~g~~~~~~-----~~-~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~ 123 (169)
T cd01892 51 GQEKYLILREVGEDEVAIL-----LN-DAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIP-CLFVAAKADLDEQ 123 (169)
T ss_pred CeEEEEEEEecCCcccccc-----cc-hhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCe-EEEEEEccccccc
Confidence 0124567889998753221 11 111247899999999975432222 1222211 234 4999999998533
Q ss_pred ccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
........ +.+.....+.+...+|+..|.| +..+++.+.+.+
T Consensus 124 ~~~~~~~~-------------~~~~~~~~~~~~~~~Sa~~~~~-v~~lf~~l~~~~ 165 (169)
T cd01892 124 QQRYEVQP-------------DEFCRKLGLPPPLHFSSKLGDS-SNELFTKLATAA 165 (169)
T ss_pred ccccccCH-------------HHHHHHcCCCCCEEEEeccCcc-HHHHHHHHHHHh
Confidence 11000000 1111111122235689999998 999998887654
No 260
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.66 E-value=8.7e-08 Score=105.91 Aligned_cols=159 Identities=19% Similarity=0.249 Sum_probs=88.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
+|+++|.+|+||||++++|. |.. .|.+-. .-+...+. .+.+.. +...
T Consensus 2 ~I~iiG~~d~GKTTLi~aLt------g~~-----~d~~~e----E~~rGiTi-d~~~~~-----------------~~~~ 48 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALT------GIA-----ADRLPE----EKKRGMTI-DLGFAY-----------------FPLP 48 (581)
T ss_pred EEEEECCCCCCHHHHHHHHh------Ccc-----CcCChh----HhcCCceE-EeEEEE-----------------EEeC
Confidence 68999999999999999998 543 222110 00011111 111100 0012
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc--HHHHHHHHh-ccCCeeEEEEeCccCCCCccch
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFK-QSVSVGAVIVTKMDGHAKGGGA 259 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~--~~~~~~~f~-~~~~i~~vVltK~D~~~~~g~~ 259 (494)
++.+.|+||||... +...+ +..+..+|.+++|+|++.|.. ..+.+..+. ..++...+|+||+|..... .
T Consensus 49 ~~~v~~iDtPGhe~----f~~~~--~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~--~ 120 (581)
T TIGR00475 49 DYRLGFIDVPGHEK----FISNA--IAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEE--E 120 (581)
T ss_pred CEEEEEEECCCHHH----HHHHH--HhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHH--H
Confidence 46788999999632 22222 233457899999999987532 222222222 1244248999999986432 1
Q ss_pred hHHHH-hcCCCeEEecccccccc--ccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 260 LSAVA-ATKSPVIFIGTGEHMDE--FEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 260 ls~~~-~~g~Pi~fi~~Ge~i~~--l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
+.... ... +.+.. +.+..|..++|+..|.| ++.+.+.+.+.++
T Consensus 121 ~~~~~~ei~---------~~l~~~~~~~~~~ii~vSA~tG~G-I~eL~~~L~~l~~ 166 (581)
T TIGR00475 121 IKRTEMFMK---------QILNSYIFLKNAKIFKTSAKTGQG-IGELKKELKNLLE 166 (581)
T ss_pred HHHHHHHHH---------HHHHHhCCCCCCcEEEEeCCCCCC-chhHHHHHHHHHH
Confidence 11110 000 00011 11134667789999999 9998888876653
No 261
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.66 E-value=1.6e-07 Score=91.33 Aligned_cols=105 Identities=10% Similarity=-0.009 Sum_probs=59.6
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhc-CCCEEEEEecCCCcccHH---HHHHHHhc-----cCCeeEEEEeCccCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEAT-NPDLVIFVMDSSIGQAAF---DQAQAFKQ-----SVSVGAVIVTKMDGH 253 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~-~~d~vllVvDa~~g~~~~---~~~~~f~~-----~~~i~~vVltK~D~~ 253 (494)
.+.+.|+||||... . +.. .... .+|.+++|.|++...... .....+.. ..|+ .+|.||+|..
T Consensus 49 ~~~l~i~Dt~G~~~---~----~~~-~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~pi-ilV~NK~Dl~ 119 (221)
T cd04148 49 ESTLVVIDHWEQEM---W----TED-SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPI-ILVGNKSDLA 119 (221)
T ss_pred EEEEEEEeCCCcch---H----HHh-HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEEChhcc
Confidence 46789999999861 1 111 1112 789999999998643221 11222221 2344 9999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.......... +....-.. .+...+|+..|.| ++.+++.+.+.+
T Consensus 120 ~~~~v~~~~~-------------~~~a~~~~-~~~~e~SA~~~~g-v~~l~~~l~~~~ 162 (221)
T cd04148 120 RSREVSVQEG-------------RACAVVFD-CKFIETSAGLQHN-VDELLEGIVRQI 162 (221)
T ss_pred ccceecHHHH-------------HHHHHHcC-CeEEEecCCCCCC-HHHHHHHHHHHH
Confidence 4321111100 01100001 1335689999999 999998887665
No 262
>PTZ00369 Ras-like protein; Provisional
Probab=98.66 E-value=1.6e-07 Score=88.57 Aligned_cols=153 Identities=14% Similarity=0.111 Sum_probs=81.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|.+||||||++++++ +.+. .+.+.|..... + ...+.+ . .
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~------~~~~----~~~~~~t~~~~---~--~~~~~~----~----------------~ 50 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFI------QNHF----IDEYDPTIEDS---Y--RKQCVI----D----------------E 50 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHh------cCCC----CcCcCCchhhE---E--EEEEEE----C----------------C
Confidence 458999999999999999988 3221 01111110000 0 000000 0 1
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHHhc-----cCCeeEEEEeCccCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ-----SVSVGAVIVTKMDGH 253 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f~~-----~~~i~~vVltK~D~~ 253 (494)
..+.+-|+||||..... .+.. ......+.+++|+|.+..... ......+.. .+|+ .+|.||.|..
T Consensus 51 ~~~~l~i~Dt~G~~~~~-~l~~-----~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~pi-iiv~nK~Dl~ 123 (189)
T PTZ00369 51 ETCLLDILDTAGQEEYS-AMRD-----QYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPM-ILVGNKCDLD 123 (189)
T ss_pred EEEEEEEEeCCCCccch-hhHH-----HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECcccc
Confidence 23456789999976433 1211 122367899999998754321 111222211 2344 8899999974
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
........... +....+. .|...+|+..|.| ++.+++.+.+.+
T Consensus 124 ~~~~i~~~~~~------------~~~~~~~--~~~~e~Sak~~~g-i~~~~~~l~~~l 166 (189)
T PTZ00369 124 SERQVSTGEGQ------------ELAKSFG--IPFLETSAKQRVN-VDEAFYELVREI 166 (189)
T ss_pred cccccCHHHHH------------HHHHHhC--CEEEEeeCCCCCC-HHHHHHHHHHHH
Confidence 32110000000 0001111 2456789999999 999888886654
No 263
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.65 E-value=1.6e-07 Score=86.14 Aligned_cols=107 Identities=16% Similarity=0.010 Sum_probs=58.0
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHh---ccCCeeEEEEeCccCCCCc
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK---QSVSVGAVIVTKMDGHAKG 256 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~---~~~~i~~vVltK~D~~~~~ 256 (494)
.+.+.|.||||..... .+. ......++.+++|.|.+....... ...... ..-.+..+|.||+|.....
T Consensus 50 ~~~l~i~Dt~G~~~~~-----~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~ 123 (166)
T cd04122 50 KIKLQIWDTAGQERFR-----AVT-RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQR 123 (166)
T ss_pred EEEEEEEECCCcHHHH-----HHH-HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 4678899999964321 111 122346899999999975432211 111111 1112348899999985432
Q ss_pred cchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 257 g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
........ +..... -.+...+|+..|.| +.++++.+.+.
T Consensus 124 ~~~~~~~~------------~~~~~~--~~~~~e~Sa~~~~~-i~e~f~~l~~~ 162 (166)
T cd04122 124 DVTYEEAK------------QFADEN--GLLFLECSAKTGEN-VEDAFLETAKK 162 (166)
T ss_pred CcCHHHHH------------HHHHHc--CCEEEEEECCCCCC-HHHHHHHHHHH
Confidence 11111110 000111 12445689999999 88887776543
No 264
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.65 E-value=1.7e-07 Score=86.50 Aligned_cols=105 Identities=10% Similarity=0.022 Sum_probs=60.4
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHh---ccCCeeEEEEeCccCCCCc
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK---QSVSVGAVIVTKMDGHAKG 256 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~---~~~~i~~vVltK~D~~~~~ 256 (494)
.+.+.+.||||..... . +.. .....+|.+++|+|.+....... ....+. ...|+ .+|.||+|...+.
T Consensus 48 ~~~l~i~Dt~G~~~~~-~----~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~pi-iiv~nK~Dl~~~~ 120 (166)
T cd00877 48 KIRFNVWDTAGQEKFG-G----LRD-GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPI-VLCGNKVDIKDRK 120 (166)
T ss_pred EEEEEEEECCCChhhc-c----ccH-HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcE-EEEEEchhccccc
Confidence 4678899999974322 1 111 12346899999999986533221 112221 23455 8999999985321
Q ss_pred cchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 257 g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
-. ... ..... ....+...+|+..|.| ++.+++.+.+.+
T Consensus 121 ~~--~~~-------------~~~~~-~~~~~~~e~Sa~~~~~-v~~~f~~l~~~~ 158 (166)
T cd00877 121 VK--AKQ-------------ITFHR-KKNLQYYEISAKSNYN-FEKPFLWLARKL 158 (166)
T ss_pred CC--HHH-------------HHHHH-HcCCEEEEEeCCCCCC-hHHHHHHHHHHH
Confidence 00 000 00000 1112345689999999 999999987654
No 265
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.65 E-value=1.9e-07 Score=102.14 Aligned_cols=120 Identities=18% Similarity=0.250 Sum_probs=71.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
+..|+++|++|||||||+|.|. |.++..++. +++ .+++. ..++...
T Consensus 118 slrIvLVGKTGVGKSSLINSIL------Gekvf~vss--~~~--------~TTr~-~ei~~~i----------------- 163 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIF------GEVKFSTDA--FGM--------GTTSV-QEIEGLV----------------- 163 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHh------ccccccccC--CCC--------CceEE-EEEEEEE-----------------
Confidence 4569999999999999999999 888776643 322 22221 1111111
Q ss_pred ccCCcEEEEeCCCCCchh------HHHHHHHHHHHHhcCCCEEEEEecCCC-ccc--HHHHHHH----Hhcc-CCeeEEE
Q 011076 181 KENCDLIIVDTSGRHKQE------AALFEEMRQVSEATNPDLVIFVMDSSI-GQA--AFDQAQA----FKQS-VSVGAVI 246 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~------~~l~~el~~i~~~~~~d~vllVvDa~~-g~~--~~~~~~~----f~~~-~~i~~vV 246 (494)
.+..+.||||||..... ..+..++........+|.++||..... ..+ ....++. |-+. ..-.+||
T Consensus 164 -dG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVV 242 (763)
T TIGR00993 164 -QGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVT 242 (763)
T ss_pred -CCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEE
Confidence 25678999999997642 122222222223335788888875432 222 2223333 3322 2456999
Q ss_pred EeCccCCCC
Q 011076 247 VTKMDGHAK 255 (494)
Q Consensus 247 ltK~D~~~~ 255 (494)
+|+.|....
T Consensus 243 FThgD~lpp 251 (763)
T TIGR00993 243 LTHAASAPP 251 (763)
T ss_pred EeCCccCCC
Confidence 999998753
No 266
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.64 E-value=2.5e-07 Score=89.26 Aligned_cols=108 Identities=12% Similarity=0.055 Sum_probs=59.3
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhcc------CCeeEEEEeCccCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQS------VSVGAVIVTKMDGH 253 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~~------~~i~~vVltK~D~~ 253 (494)
.+.+.|.||||..... .+.. .....+|.+++|+|.+......+ ....+.+. -++..+|.||+|..
T Consensus 49 ~~~~~i~Dt~G~~~~~-~l~~-----~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 49 NVTLQVWDIGGQSIGG-KMLD-----KYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred EEEEEEEECCCcHHHH-HHHH-----HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 3567899999964221 1111 12347899999999875422111 11222211 12347899999985
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.......... +.+..... .+...+|++.|.| ++.+++.+.+.+
T Consensus 123 ~~~~v~~~~~-------------~~~~~~~~-~~~~~iSAktg~g-v~~lf~~l~~~l 165 (215)
T cd04109 123 HNRTVKDDKH-------------ARFAQANG-MESCLVSAKTGDR-VNLLFQQLAAEL 165 (215)
T ss_pred cccccCHHHH-------------HHHHHHcC-CEEEEEECCCCCC-HHHHHHHHHHHH
Confidence 3211100000 11100011 2345689999999 999998887654
No 267
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.64 E-value=2e-07 Score=85.65 Aligned_cols=106 Identities=15% Similarity=0.049 Sum_probs=56.9
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc--HH-HHHHHHh--------ccCCeeEEEEeCcc
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AF-DQAQAFK--------QSVSVGAVIVTKMD 251 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~--~~-~~~~~f~--------~~~~i~~vVltK~D 251 (494)
.+.+.|.||||..... .+.. .....+|.+++|.|.+.... .. .....+. ..+|+ .+|.||+|
T Consensus 53 ~~~l~i~D~~G~~~~~-----~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D 125 (170)
T cd04116 53 FVTLQIWDTAGQERFR-----SLRT-PFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPF-VVLGNKND 125 (170)
T ss_pred EEEEEEEeCCChHHHH-----HhHH-HHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcE-EEEEECcc
Confidence 4677899999964321 1111 12335788888888764321 11 1112121 12344 88999999
Q ss_pred CCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 252 GHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 252 ~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
...+......+. +...++. ..+...+|+..|.| +..+++.+.+.
T Consensus 126 l~~~~~~~~~~~-------------~~~~~~~-~~~~~e~Sa~~~~~-v~~~~~~~~~~ 169 (170)
T cd04116 126 IPERQVSTEEAQ-------------AWCRENG-DYPYFETSAKDATN-VAAAFEEAVRR 169 (170)
T ss_pred ccccccCHHHHH-------------HHHHHCC-CCeEEEEECCCCCC-HHHHHHHHHhh
Confidence 863321111111 0111111 12445689999999 99998887653
No 268
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.64 E-value=1.2e-07 Score=95.13 Aligned_cols=149 Identities=19% Similarity=0.306 Sum_probs=86.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc--ccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA--DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~--D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
+.+||.||+||||++++|. ..|..|.+. -|-+| ..+.-.| .
T Consensus 199 vGLVG~PNAGKSTLL~als------~AKpkVa~YaFTTL~P-----------~iG~v~y---d----------------- 241 (366)
T KOG1489|consen 199 VGLVGFPNAGKSTLLNALS------RAKPKVAHYAFTTLRP-----------HIGTVNY---D----------------- 241 (366)
T ss_pred cceecCCCCcHHHHHHHhh------ccCCcccccceeeecc-----------ccceeec---c-----------------
Confidence 6899999999999999999 444443332 11111 1121111 1
Q ss_pred cCCcEEEEeCCCCCchh---HHH-HHHHHHHHHhcCCCEEEEEecCCCccc--HHH-------HHHHHhccC--CeeEEE
Q 011076 182 ENCDLIIVDTSGRHKQE---AAL-FEEMRQVSEATNPDLVIFVMDSSIGQA--AFD-------QAQAFKQSV--SVGAVI 246 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~---~~l-~~el~~i~~~~~~d~vllVvDa~~g~~--~~~-------~~~~f~~~~--~i~~vV 246 (494)
+.-++-+-|-||+.+.. ..+ .+.++.+ -.++..+||+|.+.++. +.+ ..+.+.+.+ .+..+|
T Consensus 242 df~q~tVADiPGiI~GAh~nkGlG~~FLrHi---ER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liV 318 (366)
T KOG1489|consen 242 DFSQITVADIPGIIEGAHMNKGLGYKFLRHI---ERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIV 318 (366)
T ss_pred ccceeEeccCccccccccccCcccHHHHHHH---HhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEE
Confidence 12347888999985422 111 1223333 24688999999987732 222 233444433 456899
Q ss_pred EeCccCCCCccchhHH-HHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 247 VTKMDGHAKGGGALSA-VAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 247 ltK~D~~~~~g~~ls~-~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
+||+|........++. ...+..| ...++|+..|.| ++.|++.+.+.
T Consensus 319 aNKiD~~eae~~~l~~L~~~lq~~-----------------~V~pvsA~~~eg-l~~ll~~lr~~ 365 (366)
T KOG1489|consen 319 ANKIDLPEAEKNLLSSLAKRLQNP-----------------HVVPVSAKSGEG-LEELLNGLREL 365 (366)
T ss_pred EeccCchhHHHHHHHHHHHHcCCC-----------------cEEEeeeccccc-hHHHHHHHhhc
Confidence 9999984222222222 2211111 356789999999 99999888764
No 269
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.64 E-value=2.1e-07 Score=101.56 Aligned_cols=132 Identities=17% Similarity=0.197 Sum_probs=69.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc-CcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT-FRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~-~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
.+.|+++|.+|+||||++.+|..+...- .+..-|..+. .+.+..|. .+.-...++.+..... .+
T Consensus 11 ~RniaiiGh~~aGKTTL~e~Ll~~~g~i-~~~g~v~~~g~~~~t~~D~-~~~E~~rgisi~~~~~-------------~~ 75 (527)
T TIGR00503 11 RRTFAIISHPDAGKTTITEKVLLYGGAI-QTAGAVKGRGSQRHAKSDW-MEMEKQRGISITTSVM-------------QF 75 (527)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhCCCc-cccceeccccccccccCCC-CHHHHhcCCcEEEEEE-------------EE
Confidence 4579999999999999999997542210 1111222110 00000000 0111112232211100 11
Q ss_pred hccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH--HHHHHHh-ccCCeeEEEEeCccCCC
Q 011076 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAFK-QSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~--~~~~~f~-~~~~i~~vVltK~D~~~ 254 (494)
...++.+.|+||||...... +. ......+|.+++|+|++.+.... ...+... ...| ..+++||+|...
T Consensus 76 ~~~~~~inliDTPG~~df~~----~~--~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~P-iivviNKiD~~~ 146 (527)
T TIGR00503 76 PYRDCLVNLLDTPGHEDFSE----DT--YRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTP-IFTFMNKLDRDI 146 (527)
T ss_pred eeCCeEEEEEECCChhhHHH----HH--HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEECccccC
Confidence 12478899999999853222 21 11233689999999998764322 1222222 2244 489999999853
No 270
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.64 E-value=2.4e-07 Score=84.48 Aligned_cols=105 Identities=14% Similarity=0.031 Sum_probs=58.4
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHHhc-----cCCeeEEEEeCccCCCC
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ-----SVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f~~-----~~~i~~vVltK~D~~~~ 255 (494)
+.+.|.||||..... .+... ....+|.+++|.|.+..... ......+.. ..|+ .+|.||+|....
T Consensus 49 ~~l~i~Dt~G~~~~~-~~~~~-----~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-viv~nK~Dl~~~ 121 (163)
T cd04176 49 SVLEILDTAGTEQFA-SMRDL-----YIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPI-ILVGNKVDLESE 121 (163)
T ss_pred EEEEEEECCCccccc-chHHH-----HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccchhc
Confidence 456789999964332 12111 12367899999998754321 122222221 2344 889999998543
Q ss_pred ccchhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
........ +.+ ..+ ..+...+|+..|.| +..+++.+.+.+
T Consensus 122 ~~~~~~~~-------------~~~~~~~--~~~~~~~Sa~~~~~-v~~l~~~l~~~l 162 (163)
T cd04176 122 REVSSAEG-------------RALAEEW--GCPFMETSAKSKTM-VNELFAEIVRQM 162 (163)
T ss_pred CccCHHHH-------------HHHHHHh--CCEEEEecCCCCCC-HHHHHHHHHHhc
Confidence 21111000 111 111 12446689999999 999988886543
No 271
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=98.64 E-value=6.9e-08 Score=98.86 Aligned_cols=40 Identities=33% Similarity=0.410 Sum_probs=37.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~ 140 (494)
.++++|+|..||||||+++++|.++++.|++|++|+.||-
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPA 41 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPA 41 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 3689999999999999999999999999999999999983
No 272
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.63 E-value=1.8e-07 Score=87.89 Aligned_cols=154 Identities=11% Similarity=0.023 Sum_probs=80.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|.+||||||+++++. +.+... .|.+ +.+.......+... ..
T Consensus 2 ki~v~G~~~vGKSsli~~~~------~~~~~~----~~~~-------t~~~~~~~~~~~~~-----------------~~ 47 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFT------EDEFSE----STKS-------TIGVDFKIKTVYIE-----------------NK 47 (188)
T ss_pred EEEEECCCCCCHHHHHHHHh------cCCCCC----CCCC-------ceeeEEEEEEEEEC-----------------CE
Confidence 48999999999999999998 433210 0100 00000000000000 02
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHH---HHHHh---ccCCeeEEEEeCccCCCCc
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ---AQAFK---QSVSVGAVIVTKMDGHAKG 256 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~---~~~f~---~~~~i~~vVltK~D~~~~~ 256 (494)
.+.+.|.||||...... + .......+|.+++|+|.+........ ...+. ....+..+|.||.|.....
T Consensus 48 ~~~~~i~Dt~g~~~~~~-----~-~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~ 121 (188)
T cd04125 48 IIKLQIWDTNGQERFRS-----L-NNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNK 121 (188)
T ss_pred EEEEEEEECCCcHHHHh-----h-HHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccc
Confidence 35678999999642211 1 11223468999999998754322211 11121 1112348899999975321
Q ss_pred cchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 257 g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
..-..... ...+... .+...+|+..|.| ++.+++.+.+.+
T Consensus 122 ~v~~~~~~-------------~~~~~~~-~~~~evSa~~~~~-i~~~f~~l~~~~ 161 (188)
T cd04125 122 VVDSNIAK-------------SFCDSLN-IPFFETSAKQSIN-VEEAFILLVKLI 161 (188)
T ss_pred cCCHHHHH-------------HHHHHcC-CeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 10000100 0000001 1445689999998 988888776654
No 273
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.63 E-value=7.6e-08 Score=90.67 Aligned_cols=108 Identities=17% Similarity=0.087 Sum_probs=58.6
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHHhc---cCCeeEEEEeCccCCCCcc
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ---SVSVGAVIVTKMDGHAKGG 257 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~~---~~~i~~vVltK~D~~~~~g 257 (494)
+.+.|+||||..... . +.. .....+|.+++|+|.+...... .....+.. ..|+ .+|.||+|......
T Consensus 50 ~~l~i~D~~G~~~~~-~----~~~-~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~pi-ilv~nK~Dl~~~~~ 122 (193)
T cd04118 50 VTLGIWDTAGSERYE-A----MSR-IYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKI-YLCGTKSDLIEQDR 122 (193)
T ss_pred EEEEEEECCCchhhh-h----hhH-hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCE-EEEEEccccccccc
Confidence 456789999974322 1 111 1123689999999987542211 12222222 2444 89999999753311
Q ss_pred chhHHHHhcCCCeEEeccccccccc-cc-cCccchhhcccCCCCchHHHHHHHHhC
Q 011076 258 GALSAVAATKSPVIFIGTGEHMDEF-EV-FDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 258 ~~ls~~~~~g~Pi~fi~~Ge~i~~l-~~-f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
....+.. +.+..+ .. ..+...+|+..|.| ++.|++.+.+.+
T Consensus 123 ~~~~v~~------------~~~~~~~~~~~~~~~~~Sa~~~~g-v~~l~~~i~~~~ 165 (193)
T cd04118 123 SLRQVDF------------HDVQDFADEIKAQHFETSSKTGQN-VDELFQKVAEDF 165 (193)
T ss_pred ccCccCH------------HHHHHHHHHcCCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 0000000 000011 01 12345689999999 999998887654
No 274
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.62 E-value=3.2e-07 Score=101.98 Aligned_cols=161 Identities=17% Similarity=0.206 Sum_probs=88.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
+|+++|..++||||++++|. |.. .|.+.. .-+...|. .+.+.. ... ..
T Consensus 2 ii~~~GhvdhGKTtLi~aLt------g~~-----~dr~~e----E~~rGiTI-~l~~~~-~~~---------------~~ 49 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAIT------GVN-----ADRLPE----EKKRGMTI-DLGYAY-WPQ---------------PD 49 (614)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCC-----Cccchh----cccCCceE-EeeeEE-Eec---------------CC
Confidence 68999999999999999998 532 222210 00001111 111100 000 01
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc--HHHHHHHHhc-cCCeeEEEEeCccCCCCccch
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQ-SVSVGAVIVTKMDGHAKGGGA 259 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~--~~~~~~~f~~-~~~i~~vVltK~D~~~~~g~~ 259 (494)
+..+.||||||... +...+ +..+...|.+++|+|+..|.. ..+.+..+.. ..+..++|+||+|..... ..
T Consensus 50 g~~i~~IDtPGhe~----fi~~m--~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~-~~ 122 (614)
T PRK10512 50 GRVLGFIDVPGHEK----FLSNM--LAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEA-RI 122 (614)
T ss_pred CcEEEEEECCCHHH----HHHHH--HHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHH-HH
Confidence 34568999999732 22332 233456899999999987632 2222332222 234346899999986431 11
Q ss_pred hHHHHhcCCCeEEecccccccccc-ccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 260 LSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 260 ls~~~~~g~Pi~fi~~Ge~i~~l~-~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
........ +.+.... ...|..++|+..|.| ++.|++.+.+...
T Consensus 123 ~~v~~ei~---------~~l~~~~~~~~~ii~VSA~tG~g-I~~L~~~L~~~~~ 166 (614)
T PRK10512 123 AEVRRQVK---------AVLREYGFAEAKLFVTAATEGRG-IDALREHLLQLPE 166 (614)
T ss_pred HHHHHHHH---------HHHHhcCCCCCcEEEEeCCCCCC-CHHHHHHHHHhhc
Confidence 11111000 0000000 134667899999999 9999999987653
No 275
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.62 E-value=2.8e-07 Score=84.79 Aligned_cols=107 Identities=13% Similarity=0.025 Sum_probs=57.3
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHHh-----ccCCeeEEEEeCccCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFK-----QSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~-----~~~~i~~vVltK~D~~~ 254 (494)
.+.+.++||||...... +.+. .....+.+++|+|.+...... .....+. ...|+ .+|.||.|...
T Consensus 48 ~~~~~i~Dt~G~~~~~~-~~~~-----~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~pi-iiv~nK~D~~~ 120 (168)
T cd04177 48 QCDLEILDTAGTEQFTA-MREL-----YIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPM-VLVGNKADLED 120 (168)
T ss_pred EEEEEEEeCCCcccchh-hhHH-----HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCE-EEEEEChhccc
Confidence 35678999999754321 1111 122468888999987543211 1112121 12454 78999999754
Q ss_pred CccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
.......... .+..-....|...+|+..|.| +..+++++...
T Consensus 121 ~~~~~~~~~~-------------~~~~~~~~~~~~~~SA~~~~~-i~~~f~~i~~~ 162 (168)
T cd04177 121 DRQVSREDGV-------------SLSQQWGNVPFYETSARKRTN-VDEVFIDLVRQ 162 (168)
T ss_pred cCccCHHHHH-------------HHHHHcCCceEEEeeCCCCCC-HHHHHHHHHHH
Confidence 3211100000 000000113456689999999 98888887653
No 276
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.60 E-value=2.2e-07 Score=98.55 Aligned_cols=113 Identities=18% Similarity=0.179 Sum_probs=65.3
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc---cHHHHHHHHhc-cCCeeEEEEeCccCCCCccc
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---AAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGGG 258 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~---~~~~~~~~f~~-~~~i~~vVltK~D~~~~~g~ 258 (494)
...+.|+||||... +...+ +..+..+|.+++|+|++.+. ...+.+..+.. ..+...+|+||+|.......
T Consensus 79 ~~~i~liDtPGh~~----f~~~~--~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~ 152 (406)
T TIGR03680 79 LRRVSFVDAPGHET----LMATM--LSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKA 152 (406)
T ss_pred ccEEEEEECCCHHH----HHHHH--HHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHH
Confidence 35689999999642 22332 22334689999999998642 22233332222 13334788999998643211
Q ss_pred hhHHHHhcCCCeEEecccccccc-ccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 259 ALSAVAATKSPVIFIGTGEHMDE-FEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 259 ~ls~~~~~g~Pi~fi~~Ge~i~~-l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
. ....... +.+.. .....|..++|+..|.| ++.|++.+...++
T Consensus 153 ~-~~~~~i~---------~~l~~~~~~~~~ii~vSA~~g~g-i~~L~e~L~~~l~ 196 (406)
T TIGR03680 153 L-ENYEEIK---------EFVKGTVAENAPIIPVSALHNAN-IDALLEAIEKFIP 196 (406)
T ss_pred H-HHHHHHH---------hhhhhcccCCCeEEEEECCCCCC-hHHHHHHHHHhCC
Confidence 0 0010000 00000 01123567799999999 9999999998765
No 277
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.59 E-value=2.8e-07 Score=86.25 Aligned_cols=109 Identities=12% Similarity=0.055 Sum_probs=61.0
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHH----HHH---HhccCCeeEEEEeCccCCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ----AQA---FKQSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~----~~~---f~~~~~i~~vVltK~D~~~~ 255 (494)
.+.+.|.||||..... .+. -.....+|.+++|.|.+......+. ... +....|+ .+|.||.|....
T Consensus 48 ~~~l~i~Dt~G~~~~~-----~~~-~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~ 120 (187)
T cd04132 48 IIELALWDTAGQEEYD-----RLR-PLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPI-MLVGLKTDLRKD 120 (187)
T ss_pred EEEEEEEECCCchhHH-----HHH-HHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEeChhhhhC
Confidence 4577899999964321 111 1123468999999998754322111 111 2223455 899999998542
Q ss_pred ccc--hhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 256 GGG--ALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 256 ~g~--~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
... ...... .+.+ ..+. ..+...+|+..|.| +..+++.+.+.+
T Consensus 121 ~~~~~~v~~~~-----------~~~~~~~~~-~~~~~e~Sa~~~~~-v~~~f~~l~~~~ 166 (187)
T cd04132 121 KNLDRKVTPAQ-----------AESVAKKQG-AFAYLECSAKTMEN-VEEVFDTAIEEA 166 (187)
T ss_pred ccccCCcCHHH-----------HHHHHHHcC-CcEEEEccCCCCCC-HHHHHHHHHHHH
Confidence 100 000000 0111 1111 11446789999999 999999887765
No 278
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.59 E-value=3.2e-07 Score=84.00 Aligned_cols=106 Identities=14% Similarity=0.100 Sum_probs=56.6
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH------HHHHHHhc---cCCeeEEEEeCccCCC
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF------DQAQAFKQ---SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~------~~~~~f~~---~~~i~~vVltK~D~~~ 254 (494)
+.+-|+||||........ .. .....+|.+++|+|++...... ..+..... ..|+ .+|.||+|...
T Consensus 47 ~~~~i~D~~g~~~~~~~~---~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~ 120 (165)
T cd04146 47 VSLEILDTAGQQQADTEQ---LE--RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPV-ILVGNKADLLH 120 (165)
T ss_pred EEEEEEECCCCcccccch---HH--HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECCchHH
Confidence 457799999976311111 11 1123579999999998653211 11222221 3444 89999999743
Q ss_pred CccchhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
......... +.+ .++. .+...+|+..|.++++.+++.+.+.
T Consensus 121 ~~~v~~~~~-------------~~~~~~~~--~~~~e~Sa~~~~~~v~~~f~~l~~~ 162 (165)
T cd04146 121 YRQVSTEEG-------------EKLASELG--CLFFEVSAAEDYDGVHSVFHELCRE 162 (165)
T ss_pred hCccCHHHH-------------HHHHHHcC--CEEEEeCCCCCchhHHHHHHHHHHH
Confidence 211000000 111 1111 2345578888852399988887654
No 279
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.59 E-value=1.3e-07 Score=87.56 Aligned_cols=116 Identities=12% Similarity=0.083 Sum_probs=60.7
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH----HHHHHhc---cCCeeEEEEeCccCCCCc
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ---SVSVGAVIVTKMDGHAKG 256 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~----~~~~f~~---~~~i~~vVltK~D~~~~~ 256 (494)
..+.|+||||..... .+.. .....+|.+++|.|.+......+ ....+.. ..++ .+|.||+|.....
T Consensus 48 ~~~~i~Dt~G~~~~~-----~~~~-~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~ 120 (173)
T cd04130 48 VRLQLCDTAGQDEFD-----KLRP-LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPI-ILVGTQADLRTDV 120 (173)
T ss_pred EEEEEEECCCChhhc-----cccc-cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCE-EEEeeChhhccCh
Confidence 467899999974321 1111 12346899999999875432211 1222222 2444 8999999986543
Q ss_pred cchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHH
Q 011076 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIH 308 (494)
Q Consensus 257 g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~ 308 (494)
+...........++.. ..++.+..-....+...+|++.|.| ++.+++.+.
T Consensus 121 ~~~~~~~~~~~~~v~~-~~~~~~a~~~~~~~~~e~Sa~~~~~-v~~lf~~~~ 170 (173)
T cd04130 121 NVLIQLARYGEKPVSQ-SRAKALAEKIGACEYIECSALTQKN-LKEVFDTAI 170 (173)
T ss_pred hHHHHHhhcCCCCcCH-HHHHHHHHHhCCCeEEEEeCCCCCC-HHHHHHHHH
Confidence 3222211111111110 0001111111122445689999999 999988764
No 280
>PRK12739 elongation factor G; Reviewed
Probab=98.58 E-value=6.7e-07 Score=101.03 Aligned_cols=129 Identities=24% Similarity=0.203 Sum_probs=69.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
.+.|+++|.+++|||||+++|..+.... .++..|+.. ....|.+.. -...++...... ..+.
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~-~~~~~v~~~---~~~~D~~~~-E~~rgiti~~~~-------------~~~~ 69 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKS-HKIGEVHDG---AATMDWMEQ-EQERGITITSAA-------------TTCF 69 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCc-cccccccCC---ccccCCChh-HhhcCCCcccee-------------EEEE
Confidence 4579999999999999999998543321 111111110 000000000 000111110000 0112
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH--HHHHHHh-ccCCeeEEEEeCccCCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAFK-QSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~--~~~~~f~-~~~~i~~vVltK~D~~~ 254 (494)
..++.+++|||||.+.. ..+. .......|.+++|+|+..|.... ..+.... ...+. .+++||+|...
T Consensus 70 ~~~~~i~liDTPG~~~f----~~e~--~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~-iv~iNK~D~~~ 139 (691)
T PRK12739 70 WKGHRINIIDTPGHVDF----TIEV--ERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPR-IVFVNKMDRIG 139 (691)
T ss_pred ECCEEEEEEcCCCHHHH----HHHH--HHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEECCCCCC
Confidence 24788999999997632 2222 22233569999999998775432 2233222 23555 79999999864
No 281
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.58 E-value=4.3e-07 Score=87.59 Aligned_cols=64 Identities=17% Similarity=0.197 Sum_probs=41.0
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH--HHHHHH-hccCCeeEEEEeCccCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAF-KQSVSVGAVIVTKMDGH 253 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~--~~~~~f-~~~~~i~~vVltK~D~~ 253 (494)
.+.+.|+||||........ ......+|.+++|+|++.+.... ...... ....+ ..+|+||+|..
T Consensus 70 ~~~i~iiDtpG~~~f~~~~------~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p-~iiviNK~D~~ 136 (213)
T cd04167 70 SYLFNIIDTPGHVNFMDEV------AAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLP-IVLVINKIDRL 136 (213)
T ss_pred EEEEEEEECCCCcchHHHH------HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccC
Confidence 4678999999986532221 22234689999999998765332 122222 22344 48999999975
No 282
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.58 E-value=6.7e-07 Score=82.49 Aligned_cols=106 Identities=16% Similarity=0.265 Sum_probs=61.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhccC
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~~ 183 (494)
|+++|++||||||+++++. +.+.. +.+.|. .+..+... ...+
T Consensus 2 i~ivG~~~vGKTsli~~~~------~~~~~----~~~~pt-----------~g~~~~~i-----------------~~~~ 43 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLS------SERSL----ESVVPT-----------TGFNSVAI-----------------PTQD 43 (164)
T ss_pred EEEECCCCCCHHHHHHHHh------cCCCc----cccccc-----------CCcceEEE-----------------eeCC
Confidence 7899999999999999998 32210 111110 01111110 0135
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHHh---ccCCeeEEEEeCccCCC
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFK---QSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f~---~~~~i~~vVltK~D~~~ 254 (494)
+.+.|.||||...... +.. .....+|.+++|+|++..... ......+. ...|+ .+|.||.|...
T Consensus 44 ~~l~i~Dt~G~~~~~~-~~~-----~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~pi-ilv~NK~Dl~~ 113 (164)
T cd04162 44 AIMELLEIGGSQNLRK-YWK-----RYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPL-VVLANKQDLPA 113 (164)
T ss_pred eEEEEEECCCCcchhH-HHH-----HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcE-EEEEeCcCCcC
Confidence 6789999999754321 111 123467999999998754321 11222232 22344 89999999753
No 283
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.58 E-value=2.9e-07 Score=85.02 Aligned_cols=66 Identities=17% Similarity=0.197 Sum_probs=38.7
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHh-----ccCCeeEEEEeCccCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK-----QSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~-----~~~~i~~vVltK~D~~~ 254 (494)
.+++.|+||||.......+.. .....+|.+++|+|++....... ....+. ..+|+ .+|.||+|...
T Consensus 50 ~~~~~i~Dt~G~~~~~~~~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-iiv~nK~Dl~~ 123 (170)
T cd04115 50 RIKVQLWDTAGQERFRKSMVQ-----HYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPR-ILVGNKCDLRE 123 (170)
T ss_pred EEEEEEEeCCChHHHHHhhHH-----HhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCE-EEEEECccchh
Confidence 467899999996432211111 11346799999999975432211 111111 12445 99999999753
No 284
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=98.58 E-value=4.6e-07 Score=82.41 Aligned_cols=115 Identities=23% Similarity=0.233 Sum_probs=70.0
Q ss_pred eEEEEEcC-CCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhH------------HHHH---------------hhhh
Q 011076 102 SVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF------------DQLK---------------QNAT 153 (494)
Q Consensus 102 ~vI~lvG~-~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~------------~qLk---------------~~~~ 153 (494)
++|+|+|+ +|+||||++..||..|++.|++|++|+.|.+.+... +-+. ....
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~ 80 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSLSRLLGIEPERGLSDLLYDKKSGDENLSERDLSDHIY 80 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HHHHHTTSSSSSSHHHHHTTSHC--C-HHHSHHHHHCE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCcccccccccccchhhHhcCccccccchhhhhHHHHhe
Confidence 47999995 599999999999999999999999999998665322 1111 1111
Q ss_pred ---ccCcceeccCCCCChHH-----HHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCC
Q 011076 154 ---KAKIPFYGSYTESDPVR-----IAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS 224 (494)
Q Consensus 154 ---~~~i~~~~~~~~~dp~~-----i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~ 224 (494)
..++.+.......++.. .....+..++. .||+||||+|+........ ..+..+|.+++|+.+.
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~li~~l~~-~yd~IivD~~~~~~~~~~~-------~~l~~~D~ii~v~~~~ 151 (157)
T PF13614_consen 81 SDAHDGLDLLPPPSSPEDLEELTPEDVEELIDALKE-HYDYIIVDLPSSLSNPDTQ-------AVLELADKIILVVRPD 151 (157)
T ss_dssp EESSTTEEEE--SSSSHHHHHHTSHHHHHHHHHHHH-HSSEEEEEEESTTTHTHHH-------HHHTTHSEEEEEEETT
T ss_pred eccCCCeEEecCCCCCCchhhcCHHHHHHHHHHHHH-cCCEEEEECcCCccHHHHH-------HHHHHCCEEEEEECCC
Confidence 12233333222222222 24444555554 8999999999987543221 1233579999999875
No 285
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.58 E-value=4.2e-07 Score=88.73 Aligned_cols=109 Identities=20% Similarity=0.226 Sum_probs=64.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHH
Q 011076 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (494)
Q Consensus 98 ~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~ 177 (494)
..+|.+|+++|++|+||||+++.|...+... .+.. .. + .+.+..
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~-----~~~~-~~-----------g---~i~i~~---------------- 79 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ-----NISD-IK-----------G---PITVVT---------------- 79 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccC-----cccc-cc-----------c---cEEEEe----------------
Confidence 3457889999999999999999998432210 1110 00 0 011111
Q ss_pred HHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH--HHHHHHhc-cCCeeEEEEeCccCCC
Q 011076 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAFKQ-SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 178 ~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~--~~~~~f~~-~~~i~~vVltK~D~~~ 254 (494)
..+..++++||||.. .++. ..+..+|.+++|+|++.+.... .....+.. ..+...+|+||+|...
T Consensus 80 ---~~~~~i~~vDtPg~~-------~~~l--~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~ 147 (225)
T cd01882 80 ---GKKRRLTFIECPNDI-------NAMI--DIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFK 147 (225)
T ss_pred ---cCCceEEEEeCCchH-------HHHH--HHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCC
Confidence 025678999999853 1221 2234579999999998665432 22333322 2444356999999864
No 286
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.57 E-value=3.1e-07 Score=85.94 Aligned_cols=152 Identities=20% Similarity=0.153 Sum_probs=85.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
+...|+++|++||||||++++|. ..+..-+.+ + .+..+....
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~------~~~~~~~~p--------------T--~g~~~~~i~---------------- 54 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLK------NGEISETIP--------------T--IGFNIEEIK---------------- 54 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHH------SSSEEEEEE--------------E--SSEEEEEEE----------------
T ss_pred cEEEEEEECCCccchHHHHHHhh------hccccccCc--------------c--cccccceee----------------
Confidence 35679999999999999999997 333221111 0 122111111
Q ss_pred hccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc---HHHHHHHHhc-----cCCeeEEEEeCcc
Q 011076 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ-----SVSVGAVIVTKMD 251 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~---~~~~~~~f~~-----~~~i~~vVltK~D 251 (494)
..++.+.+.|.+|...... +.+. ....++.++||+|++.... +......+.. ..| ..+++||.|
T Consensus 55 -~~~~~~~~~d~gG~~~~~~-~w~~-----y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~p-iLIl~NK~D 126 (175)
T PF00025_consen 55 -YKGYSLTIWDLGGQESFRP-LWKS-----YFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIP-ILILANKQD 126 (175)
T ss_dssp -ETTEEEEEEEESSSGGGGG-GGGG-----GHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSE-EEEEEESTT
T ss_pred -eCcEEEEEEeccccccccc-ccee-----eccccceeEEEEecccceeecccccchhhhcchhhcccce-EEEEecccc
Confidence 1367889999999754221 1111 1235789999999985432 2222222211 133 478899999
Q ss_pred CCCCccchhHHHHhcCCCeEEecccccccccc--ccCccchhhcccCCCCchHHHHHHHHh
Q 011076 252 GHAKGGGALSAVAATKSPVIFIGTGEHMDEFE--VFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 252 ~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~--~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
..... ....+....+ ++++. ........|+..|.| +.+.++++.+.
T Consensus 127 ~~~~~-~~~~i~~~l~-----------l~~l~~~~~~~v~~~sa~~g~G-v~e~l~WL~~~ 174 (175)
T PF00025_consen 127 LPDAM-SEEEIKEYLG-----------LEKLKNKRPWSVFSCSAKTGEG-VDEGLEWLIEQ 174 (175)
T ss_dssp STTSS-THHHHHHHTT-----------GGGTTSSSCEEEEEEBTTTTBT-HHHHHHHHHHH
T ss_pred ccCcc-hhhHHHhhhh-----------hhhcccCCceEEEeeeccCCcC-HHHHHHHHHhc
Confidence 75321 1112221111 12232 122234579999999 99888887653
No 287
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=98.56 E-value=1.7e-07 Score=95.68 Aligned_cols=40 Identities=30% Similarity=0.459 Sum_probs=36.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r 141 (494)
++++|.|..||||||+++++|.+++++|++|++|+.||..
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 4789999999999999999999999999999999999843
No 288
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.56 E-value=3.9e-07 Score=87.88 Aligned_cols=155 Identities=14% Similarity=0.115 Sum_probs=81.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|.+||||||+++.|. +.+.... +.+ ..++.++....... ..
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~------~~~~~~~----~~~-----------ti~~d~~~~~i~~~------------~~ 49 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFT------EGRFAEV----SDP-----------TVGVDFFSRLIEIE------------PG 49 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHH------cCCCCCC----CCc-----------eeceEEEEEEEEEC------------CC
Confidence 359999999999999999998 3221110 111 01111111000000 00
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhcc----CCeeEEEEeCccCCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQS----VSVGAVIVTKMDGHA 254 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~~----~~i~~vVltK~D~~~ 254 (494)
..+.+.|+||||..... .+. ......+|.+++|.|.+......+ ....+.+. ..+..+|.||.|...
T Consensus 50 ~~~~l~i~Dt~G~~~~~-----~~~-~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 50 VRIKLQLWDTAGQERFR-----SIT-RSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLES 123 (211)
T ss_pred CEEEEEEEeCCcchhHH-----HHH-HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccc
Confidence 13567899999964321 111 122346789999999875432211 12222111 123477889999854
Q ss_pred CccchhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
......... +.+ ..+. .+...+|+..|.| ++.+++.+.+.+
T Consensus 124 ~~~v~~~~~-------------~~~~~~~~--~~~~e~Sak~g~~-v~e~f~~l~~~~ 165 (211)
T cd04111 124 QRQVTREEA-------------EKLAKDLG--MKYIETSARTGDN-VEEAFELLTQEI 165 (211)
T ss_pred ccccCHHHH-------------HHHHHHhC--CEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 311111111 111 1111 2344579999999 988888876543
No 289
>PF02881 SRP54_N: SRP54-type protein, helical bundle domain; InterPro: IPR013822 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 1J8M_F 1J8Y_F 2J37_W 2OG2_A 3B9Q_A 2V3C_C 3NDB_B 1ZU5_B 1ZU4_A 1WGW_A ....
Probab=98.56 E-value=5.7e-07 Score=72.43 Aligned_cols=75 Identities=31% Similarity=0.475 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHH
Q 011076 6 LGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNEL 83 (494)
Q Consensus 6 l~~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL 83 (494)
|+++|+++++++.++..++++.+++.+.+|..+|+++||+++++.+++++++++... .+++++.+.+.++|+++|
T Consensus 1 L~~~l~kt~~~l~~~~~~~~~~i~~~l~ele~~Li~aDVg~~~a~~i~~~ik~~~~~---~~~~~~~~~v~~~l~~~L 75 (75)
T PF02881_consen 1 LKKGLSKTFKKLSGSIFLTEKDIEEFLEELEEALIEADVGVEVAEKIIENIKKKLIK---KKGINPREEVKKALKEEL 75 (75)
T ss_dssp HHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHC---TTSSHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhCcccccHHhHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHhc---ccCCCcHHHHHHHHHHHC
Confidence 689999999999999888999999999999999999999999999999999993332 467788899999999886
No 290
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.56 E-value=5.2e-07 Score=87.88 Aligned_cols=106 Identities=21% Similarity=0.171 Sum_probs=61.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|.+||||||+++++. +.+.. . +.+ ..+..++... ..
T Consensus 2 KIvivG~~~vGKTSLi~r~~------~~~f~--~---~~~-----------Tig~~~~~~~-----------------~~ 42 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYM------ERRFK--D---TVS-----------TVGGAFYLKQ-----------------WG 42 (220)
T ss_pred EEEEECCCCCcHHHHHHHHh------cCCCC--C---CCC-----------ccceEEEEEE-----------------ee
Confidence 48899999999999999998 32210 0 001 0111111100 02
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHH---HHHHh----ccCCeeEEEEeCccCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ---AQAFK----QSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~---~~~f~----~~~~i~~vVltK~D~~~ 254 (494)
.+.+.|+||||...... + .. .....++.+++|.|.+..+...+. ...+. ...+ .++|.||+|...
T Consensus 43 ~~~l~iwDt~G~e~~~~-l----~~-~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~p-iIlVgNK~DL~~ 114 (220)
T cd04126 43 PYNISIWDTAGREQFHG-L----GS-MYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCL-FAVVGNKLDLTE 114 (220)
T ss_pred EEEEEEEeCCCcccchh-h----HH-HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccccc
Confidence 46789999999754321 1 11 123468999999998864322221 11111 1233 489999999854
No 291
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.55 E-value=2.9e-07 Score=98.76 Aligned_cols=65 Identities=23% Similarity=0.389 Sum_probs=41.2
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc---------cHHHHHHHHhc-cCCeeEEEEeCcc
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---------AAFDQAQAFKQ-SVSVGAVIVTKMD 251 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~---------~~~~~~~~f~~-~~~i~~vVltK~D 251 (494)
.++.+.||||||... +..++ +..+..+|.+++|+|+..|. ...+.+..... .++..++++||+|
T Consensus 83 ~~~~i~lIDtPGh~~----f~~~~--~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD 156 (446)
T PTZ00141 83 PKYYFTIIDAPGHRD----FIKNM--ITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMD 156 (446)
T ss_pred CCeEEEEEECCChHH----HHHHH--HHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccc
Confidence 477899999999542 33333 23345789999999998763 22222322221 2343468999999
Q ss_pred C
Q 011076 252 G 252 (494)
Q Consensus 252 ~ 252 (494)
.
T Consensus 157 ~ 157 (446)
T PTZ00141 157 D 157 (446)
T ss_pred c
Confidence 4
No 292
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.53 E-value=3e-07 Score=98.09 Aligned_cols=67 Identities=21% Similarity=0.372 Sum_probs=40.2
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc---c--HHHHHHHHh-ccCCeeEEEEeCccCCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---A--AFDQAQAFK-QSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~---~--~~~~~~~f~-~~~~i~~vVltK~D~~~ 254 (494)
.++.+.|+||||.. .+...+ +.....+|.+++|+|++.+. . ......... ...+...+|+||+|...
T Consensus 83 ~~~~i~iiDtpGh~----~f~~~~--~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 83 DKYEVTIVDCPGHR----DFIKNM--ITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVN 155 (426)
T ss_pred CCeEEEEEECCCHH----HHHHHH--HhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccC
Confidence 46789999999953 222222 22245689999999998762 1 111111111 11233478999999853
No 293
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=98.52 E-value=1.7e-07 Score=90.41 Aligned_cols=150 Identities=17% Similarity=0.198 Sum_probs=79.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC------cchh-HHHHHh---hhhccCcc-----eeccCCCCCh
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF------RAGA-FDQLKQ---NATKAKIP-----FYGSYTESDP 168 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~------r~~a-~~qLk~---~~~~~~i~-----~~~~~~~~dp 168 (494)
.+++|||||||||.|+-+...|...|++|++|..||- -++- +..+.. .-++.++- .|....-...
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~~~ 84 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLEAN 84 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHHHhh
Confidence 6789999999999999999999999999999999973 2221 222211 11112110 0000000111
Q ss_pred HHHHHHHHHHHhccCCcEEEEeCCCCCch---hHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHH----H----Hh
Q 011076 169 VRIAVEGVETFKKENCDLIIVDTSGRHKQ---EAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQ----A----FK 237 (494)
Q Consensus 169 ~~i~~~~l~~~~~~~~dvIIIDTaG~~~~---~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~----~----f~ 237 (494)
.++... .++.....|+|+|+||.... ...+..-++.+...--.-.++-.+|+....+....+. . ..
T Consensus 85 idwl~~---~l~~~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~ 161 (290)
T KOG1533|consen 85 IDWLLE---KLKPLTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLH 161 (290)
T ss_pred hHHHHH---HhhhccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHh
Confidence 122222 22334678999999997321 1233333333333111223455566654433222211 1 11
Q ss_pred ccCCeeEEEEeCccCCCCcc
Q 011076 238 QSVSVGAVIVTKMDGHAKGG 257 (494)
Q Consensus 238 ~~~~i~~vVltK~D~~~~~g 257 (494)
-..| ..-|++|+|...+.|
T Consensus 162 melp-hVNvlSK~Dl~~~yg 180 (290)
T KOG1533|consen 162 MELP-HVNVLSKADLLKKYG 180 (290)
T ss_pred hccc-chhhhhHhHHHHhhc
Confidence 1223 367899999876654
No 294
>PLN03110 Rab GTPase; Provisional
Probab=98.52 E-value=4.2e-07 Score=87.95 Aligned_cols=154 Identities=14% Similarity=0.076 Sum_probs=82.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|.+||||||+++.|. +.+... . +.+ ..++.+....-. ...
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~------~~~~~~-~---~~~-----------t~g~~~~~~~v~-------------~~~ 58 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFT------RNEFCL-E---SKS-----------TIGVEFATRTLQ-------------VEG 58 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHh------cCCCCC-C---CCC-----------ceeEEEEEEEEE-------------ECC
Confidence 469999999999999999997 322110 0 000 011111100000 001
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhc----cCCeeEEEEeCccCCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~----~~~i~~vVltK~D~~~ 254 (494)
..+.+.|.||||...... +. -.....++.+++|.|.+....... ....+.. ..++ .+|.||+|...
T Consensus 59 ~~~~l~l~Dt~G~~~~~~-----~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-iiv~nK~Dl~~ 131 (216)
T PLN03110 59 KTVKAQIWDTAGQERYRA-----IT-SAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVI-MMAGNKSDLNH 131 (216)
T ss_pred EEEEEEEEECCCcHHHHH-----HH-HHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeE-EEEEEChhccc
Confidence 235778999999643221 11 112346788999999875332111 1222222 2334 88999999743
Q ss_pred CccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
......... ..+.+. .-.+...+|+..|.| ++.+++.+.+.+
T Consensus 132 ~~~~~~~~~-------------~~l~~~-~~~~~~e~SA~~g~~-v~~lf~~l~~~i 173 (216)
T PLN03110 132 LRSVAEEDG-------------QALAEK-EGLSFLETSALEATN-VEKAFQTILLEI 173 (216)
T ss_pred ccCCCHHHH-------------HHHHHH-cCCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 211111111 111111 123456689999999 988888876654
No 295
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=98.51 E-value=7.5e-07 Score=92.33 Aligned_cols=120 Identities=18% Similarity=0.258 Sum_probs=71.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhc-----cC-ccee-ccCCCCChHHHHHH
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATK-----AK-IPFY-GSYTESDPVRIAVE 174 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~-----~~-i~~~-~~~~~~dp~~i~~~ 174 (494)
.+.++.|.-||||||++++|... .+|.+++++-+|....+--..+-..... .. ++.. ++.++.-..++ ..
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~--~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl-~~ 81 (341)
T TIGR02475 5 PVTIVTGFLGAGKTTLIRHLLQN--AAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDF-IP 81 (341)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc--cCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHH-HH
Confidence 47899999999999999999863 3589999999987655432223221110 01 1110 11112212222 23
Q ss_pred HHHHHh--ccCCcEEEEeCCCCCchhHHHHHHHH--HHHHhcCCCEEEEEecCCC
Q 011076 175 GVETFK--KENCDLIIVDTSGRHKQEAALFEEMR--QVSEATNPDLVIFVMDSSI 225 (494)
Q Consensus 175 ~l~~~~--~~~~dvIIIDTaG~~~~~~~l~~el~--~i~~~~~~d~vllVvDa~~ 225 (494)
++..+. ...+|+|+|.|.|..... .+.+.+. .+...+.-+.++.|+|+..
T Consensus 82 ~l~~l~~~~~~~d~IvIEtsG~a~P~-~i~~~~~~~~l~~~~~l~~vvtvVDa~~ 135 (341)
T TIGR02475 82 TMTKLLARRQRPDHILIETSGLALPK-PLVQAFQWPEIRSRVTVDGVVTVVDGPA 135 (341)
T ss_pred HHHHHHhccCCCCEEEEeCCCCCCHH-HHHHHhcCccccceEEeeeEEEEEECch
Confidence 344432 357999999999997644 3333331 1222334577999999974
No 296
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.50 E-value=5.8e-07 Score=90.51 Aligned_cols=150 Identities=13% Similarity=0.140 Sum_probs=77.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+|+||||++|.|. +..+......+..+. ........+..+......+
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~------~~~~~~~~~~~~~~~-----~~~~~T~~i~~~~~~i~~~------------- 59 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLF------NTKLIPSDYPPDPAE-----EHIDKTVEIKSSKAEIEEN------------- 59 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHH------cCCCccccCCCCccc-----cccCCceEEEEEEEEEEEC-------------
Confidence 4579999999999999999998 655543322110000 0000001111111000000
Q ss_pred ccCCcEEEEeCCCCCchh------HHHHHHHH-----------HHHH--hc---CCCEEEEEecCCC-ccc--HHHHHHH
Q 011076 181 KENCDLIIVDTSGRHKQE------AALFEEMR-----------QVSE--AT---NPDLVIFVMDSSI-GQA--AFDQAQA 235 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~------~~l~~el~-----------~i~~--~~---~~d~vllVvDa~~-g~~--~~~~~~~ 235 (494)
.....+.|+||||..... ..+...+. ++.+ .. ..+.++++++++. +.. ....++.
T Consensus 60 g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~ 139 (276)
T cd01850 60 GVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKR 139 (276)
T ss_pred CEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 012568999999974321 11111111 1111 01 2567888888763 332 3455666
Q ss_pred HhccCCeeEEEEeCccCCCCccc------hhHHHHhcCCCeEEecc
Q 011076 236 FKQSVSVGAVIVTKMDGHAKGGG------ALSAVAATKSPVIFIGT 275 (494)
Q Consensus 236 f~~~~~i~~vVltK~D~~~~~g~------~ls~~~~~g~Pi~fi~~ 275 (494)
+...+++ .+|+||+|....... ....+...++++.....
T Consensus 140 l~~~v~v-i~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~ 184 (276)
T cd01850 140 LSKRVNI-IPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPE 184 (276)
T ss_pred HhccCCE-EEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCC
Confidence 6665666 899999998553211 12233445677665543
No 297
>PLN03108 Rab family protein; Provisional
Probab=98.49 E-value=7.2e-07 Score=85.91 Aligned_cols=152 Identities=14% Similarity=0.069 Sum_probs=79.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|++||||||+++.|+ +.+... .+.+ ..++.+..... ....
T Consensus 7 ~kivivG~~gvGKStLi~~l~------~~~~~~----~~~~-----------ti~~~~~~~~i-------------~~~~ 52 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFT------DKRFQP----VHDL-----------TIGVEFGARMI-------------TIDN 52 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHH------hCCCCC----CCCC-----------CccceEEEEEE-------------EECC
Confidence 469999999999999999998 322210 0101 00111100000 0000
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHHh----ccCCeeEEEEeCccCCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFK----QSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~----~~~~i~~vVltK~D~~~ 254 (494)
..+.+-|+||||..... .+ .......+|.+++|+|++...... .....+. ...++ .+|.||+|...
T Consensus 53 ~~i~l~l~Dt~G~~~~~-----~~-~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~pi-iiv~nK~Dl~~ 125 (210)
T PLN03108 53 KPIKLQIWDTAGQESFR-----SI-TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTI-MLIGNKCDLAH 125 (210)
T ss_pred EEEEEEEEeCCCcHHHH-----HH-HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcE-EEEEECccCcc
Confidence 13456799999964321 11 112234678999999987532211 1111111 12344 89999999854
Q ss_pred CccchhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
+.....+.. +.. ..+ ..+...+|+..|.| +..+++.+.+.
T Consensus 126 ~~~~~~~~~-------------~~~~~~~--~~~~~e~Sa~~~~~-v~e~f~~l~~~ 166 (210)
T PLN03108 126 RRAVSTEEG-------------EQFAKEH--GLIFMEASAKTAQN-VEEAFIKTAAK 166 (210)
T ss_pred ccCCCHHHH-------------HHHHHHc--CCEEEEEeCCCCCC-HHHHHHHHHHH
Confidence 321111111 111 111 12446689999999 88877766544
No 298
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.49 E-value=1e-06 Score=85.98 Aligned_cols=64 Identities=16% Similarity=0.215 Sum_probs=42.5
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH--HHHHHH-hccCCeeEEEEeCccCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAF-KQSVSVGAVIVTKMDGH 253 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~--~~~~~f-~~~~~i~~vVltK~D~~ 253 (494)
++.+.|+||||........ ......+|.+++|+|+..|.... ...+.. ...+++ .+|+||+|..
T Consensus 72 ~~~i~iiDTPG~~~f~~~~------~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~-ilviNKiD~~ 138 (222)
T cd01885 72 EYLINLIDSPGHVDFSSEV------TAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKP-VLVINKIDRL 138 (222)
T ss_pred ceEEEEECCCCccccHHHH------HHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCE-EEEEECCCcc
Confidence 6778999999997543322 22234679999999998775332 222322 234555 8999999975
No 299
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.48 E-value=1.9e-06 Score=91.58 Aligned_cols=111 Identities=19% Similarity=0.199 Sum_probs=65.7
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc---cHHHHHHHHhc-cCCeeEEEEeCccCCCCccch
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---AAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGGGA 259 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~---~~~~~~~~f~~-~~~i~~vVltK~D~~~~~g~~ 259 (494)
+.+.|+||||.. .+...+ +..+..+|.+++|+|++.+. ...+.+..+.. ..+...+|+||+|........
T Consensus 85 ~~i~liDtPG~~----~f~~~~--~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~ 158 (411)
T PRK04000 85 RRVSFVDAPGHE----TLMATM--LSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERAL 158 (411)
T ss_pred cEEEEEECCCHH----HHHHHH--HHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHH
Confidence 578999999953 232222 23344679999999998642 22233333222 233347889999986432111
Q ss_pred --hHHHHhcCCCeEEecccccccc-ccccCccchhhcccCCCCchHHHHHHHHhCCC
Q 011076 260 --LSAVAATKSPVIFIGTGEHMDE-FEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (494)
Q Consensus 260 --ls~~~~~g~Pi~fi~~Ge~i~~-l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~ 313 (494)
..... +.+.. .....|..++|++.|.| ++.|++.+.+.++.
T Consensus 159 ~~~~~i~------------~~l~~~~~~~~~ii~vSA~~g~g-I~~L~~~L~~~l~~ 202 (411)
T PRK04000 159 ENYEQIK------------EFVKGTVAENAPIIPVSALHKVN-IDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHH------------HHhccccCCCCeEEEEECCCCcC-HHHHHHHHHHhCCC
Confidence 11111 00000 11234567799999999 99999999987753
No 300
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.48 E-value=2.6e-07 Score=87.20 Aligned_cols=119 Identities=13% Similarity=0.146 Sum_probs=61.5
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH----HHHHHhc---cCCeeEEEEeCccCCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ---SVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~----~~~~f~~---~~~i~~vVltK~D~~~~ 255 (494)
.+.+.|.||||..... .+... ....++.+++|.|.+....... ....+.. ..|+ .+|.||.|....
T Consensus 47 ~~~l~i~Dt~G~~~~~-----~l~~~-~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~pi-ilvgNK~Dl~~~ 119 (189)
T cd04134 47 HIELSLWDTAGQEEFD-----RLRSL-SYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKL-VLVALKCDLREA 119 (189)
T ss_pred EEEEEEEECCCChhcc-----ccccc-cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEEChhhccC
Confidence 4678999999974321 11111 2346788998888765322211 1222222 2444 999999998543
Q ss_pred ccchhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
... .......+.+......|... .... ..+...+|++.|.| ++.+++.+.+.+
T Consensus 120 ~~~-~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~SAk~~~~-v~e~f~~l~~~~ 173 (189)
T cd04134 120 RNE-RDDLQRYGKHTISYEEGLAVAKRIN-ALRYLECSAKLNRG-VNEAFTEAARVA 173 (189)
T ss_pred hhh-HHHHhhccCCCCCHHHHHHHHHHcC-CCEEEEccCCcCCC-HHHHHHHHHHHH
Confidence 211 11111111111111111111 1111 12345689999999 999999887655
No 301
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=1.1e-06 Score=86.70 Aligned_cols=43 Identities=26% Similarity=0.318 Sum_probs=37.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchh
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA 144 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a 144 (494)
.++++.|..||||||++.+||..|++.|++|.+.|.|.+.|.-
T Consensus 49 iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSi 91 (300)
T KOG3022|consen 49 IILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSI 91 (300)
T ss_pred EEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCCc
Confidence 3445569999999999999999999999999999999988754
No 302
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.47 E-value=3.1e-07 Score=93.09 Aligned_cols=156 Identities=17% Similarity=0.233 Sum_probs=89.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhccC
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~~ 183 (494)
|.+||.||+||||+++.++ ..|+-|.+. ++||.. |..+.... ..+
T Consensus 162 VGLVG~PNaGKSTlls~vS------~AkPKIadY------------pFTTL~--PnLGvV~~---------------~~~ 206 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVS------AAKPKIADY------------PFTTLV--PNLGVVRV---------------DGG 206 (369)
T ss_pred cccccCCCCcHHHHHHHHh------hcCCcccCC------------cccccc--CcccEEEe---------------cCC
Confidence 6799999999999999999 555554443 223321 11111110 024
Q ss_pred CcEEEEeCCCCCchhHH---H-HHHHHHHHHhcCCCEEEEEecCCCcc--cHHH-------HHHHHhccC--CeeEEEEe
Q 011076 184 CDLIIVDTSGRHKQEAA---L-FEEMRQVSEATNPDLVIFVMDSSIGQ--AAFD-------QAQAFKQSV--SVGAVIVT 248 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~---l-~~el~~i~~~~~~d~vllVvDa~~g~--~~~~-------~~~~f~~~~--~i~~vVlt 248 (494)
..+|+-|-||..+..++ + .+.|+.+. .+-..++|+|.+... +..+ .+..+...+ ++..+|+|
T Consensus 207 ~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE---Rt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~N 283 (369)
T COG0536 207 ESFVVADIPGLIEGASEGVGLGLRFLRHIE---RTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLN 283 (369)
T ss_pred CcEEEecCcccccccccCCCccHHHHHHHH---hhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEe
Confidence 56899999998543211 1 12233333 356789999987432 2222 223343332 45689999
Q ss_pred CccCCCCccchhHHHHhcCCCeEEeccccccc-cccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 249 KMDGHAKGGGALSAVAATKSPVIFIGTGEHMD-EFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 249 K~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~-~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
|+|.......+..... .+. ....+ +..++|+..+.| ++.|+..+.+.++
T Consensus 284 KiD~~~~~e~~~~~~~-------------~l~~~~~~~-~~~~ISa~t~~g-~~~L~~~~~~~l~ 333 (369)
T COG0536 284 KIDLPLDEEELEELKK-------------ALAEALGWE-VFYLISALTREG-LDELLRALAELLE 333 (369)
T ss_pred ccCCCcCHHHHHHHHH-------------HHHHhcCCC-cceeeehhcccC-HHHHHHHHHHHHH
Confidence 9995433222222221 111 11111 112299999999 9999999988774
No 303
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.47 E-value=3.2e-07 Score=84.30 Aligned_cols=66 Identities=21% Similarity=0.284 Sum_probs=38.1
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH--HHHHH-HHhccCCeeEEEEeCc
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQ-AFKQSVSVGAVIVTKM 250 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~--~~~~~-~f~~~~~i~~vVltK~ 250 (494)
..+++||||||.........+.... ....+|.++||+++...... ..... ..........+|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~--~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEE--YLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHH--HHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHH--hhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 4679999999996432211111111 12578999999999864332 22222 2233344579999985
No 304
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.47 E-value=2.4e-06 Score=73.89 Aligned_cols=92 Identities=23% Similarity=0.172 Sum_probs=61.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..++|+|+||+||||++..++..+...++.+..++++........+.. ...+................+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALARK 76 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------hhhhhccCCCCCHHHHHHHHHHHHHh
Confidence 469999999999999999999888877667888888765543322111 11111112223334445555666665
Q ss_pred cCCcEEEEeCCCCCchhH
Q 011076 182 ENCDLIIVDTSGRHKQEA 199 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~ 199 (494)
..++++++|.++......
T Consensus 77 ~~~~viiiDei~~~~~~~ 94 (148)
T smart00382 77 LKPDVLILDEITSLLDAE 94 (148)
T ss_pred cCCCEEEEECCcccCCHH
Confidence 567999999999876543
No 305
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.46 E-value=8.4e-07 Score=85.17 Aligned_cols=65 Identities=26% Similarity=0.328 Sum_probs=39.2
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCC-CEEEEEecCCCcccH-HHHHHH----Hh------ccCCeeEEEEeCc
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNP-DLVIFVMDSSIGQAA-FDQAQA----FK------QSVSVGAVIVTKM 250 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~-d~vllVvDa~~g~~~-~~~~~~----f~------~~~~i~~vVltK~ 250 (494)
+..+.|+||||.......+... .... +.++||+|++..+.. .+.+.. +. ...|+ .+|.||.
T Consensus 47 ~~~~~l~D~pG~~~~~~~~~~~------~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pv-liv~NK~ 119 (203)
T cd04105 47 GKKFRLVDVPGHPKLRDKLLET------LKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPV-LIACNKQ 119 (203)
T ss_pred CceEEEEECCCCHHHHHHHHHH------HhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCE-EEEecch
Confidence 5678999999976433222221 1234 899999999876322 221111 11 23444 8999999
Q ss_pred cCCC
Q 011076 251 DGHA 254 (494)
Q Consensus 251 D~~~ 254 (494)
|...
T Consensus 120 Dl~~ 123 (203)
T cd04105 120 DLFT 123 (203)
T ss_pred hhcc
Confidence 9753
No 306
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.46 E-value=1.1e-06 Score=81.67 Aligned_cols=106 Identities=15% Similarity=0.123 Sum_probs=58.7
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH------HHHHHh--ccCCeeEEEEeCccCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD------QAQAFK--QSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~------~~~~f~--~~~~i~~vVltK~D~~~ 254 (494)
.+.+.|+||||..... . +.. .....+|.+++|.|.+....... ....+. ..+|+ .+|.||+|...
T Consensus 49 ~~~l~i~Dt~G~~~~~-~----l~~-~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~pi-ilvgNK~Dl~~ 121 (172)
T cd04141 49 PALLDILDTAGQAEFT-A----MRD-QYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPL-VLVGNKVDLES 121 (172)
T ss_pred EEEEEEEeCCCchhhH-H----HhH-HHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCE-EEEEEChhhhh
Confidence 3567899999975322 1 111 11335788999999875432111 122221 12444 89999999753
Q ss_pred CccchhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
... ++... ++.+ ... -.+...+|++.|.| ++.+++.+...+
T Consensus 122 ~~~--v~~~~-----------~~~~a~~~--~~~~~e~Sa~~~~~-v~~~f~~l~~~~ 163 (172)
T cd04141 122 QRQ--VTTEE-----------GRNLAREF--NCPFFETSAALRHY-IDDAFHGLVREI 163 (172)
T ss_pred cCc--cCHHH-----------HHHHHHHh--CCEEEEEecCCCCC-HHHHHHHHHHHH
Confidence 211 11000 0111 111 12445689999999 999988886544
No 307
>PRK12740 elongation factor G; Reviewed
Probab=98.45 E-value=1.7e-06 Score=97.38 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=42.1
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH--HHHHHhc-cCCeeEEEEeCccCCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD--QAQAFKQ-SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~--~~~~f~~-~~~i~~vVltK~D~~~ 254 (494)
.++++.||||||...... +.. .....+|.+++|+|++.+..... ....... ..++ .+|+||+|...
T Consensus 58 ~~~~i~liDtPG~~~~~~----~~~--~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~-iiv~NK~D~~~ 126 (668)
T PRK12740 58 KGHKINLIDTPGHVDFTG----EVE--RALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPR-IIFVNKMDRAG 126 (668)
T ss_pred CCEEEEEEECCCcHHHHH----HHH--HHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCE-EEEEECCCCCC
Confidence 478999999999864222 221 12336899999999987643322 2222222 2444 88999999864
No 308
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.44 E-value=1.5e-06 Score=86.07 Aligned_cols=108 Identities=16% Similarity=0.096 Sum_probs=60.6
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHHh-------------ccCCeeEEE
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFK-------------QSVSVGAVI 246 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~-------------~~~~i~~vV 246 (494)
.+.+-|+||+|..... .+.. .....+|.+++|.|.+...... .....+. ...++ .+|
T Consensus 47 ~~~l~I~Dt~G~~~~~-----~~~~-~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~pi-Iiv 119 (247)
T cd04143 47 VYQLDILDTSGNHPFP-----AMRR-LSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPM-VIC 119 (247)
T ss_pred EEEEEEEECCCChhhh-----HHHH-HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcE-EEE
Confidence 4677899999975322 1221 1234689999999987532211 1111111 12344 899
Q ss_pred EeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 247 VTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 247 ltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.||+|.......-..... +.+.. ....+...+|+..|.| ++++++.+.+..
T Consensus 120 gNK~Dl~~~~~v~~~ei~------------~~~~~-~~~~~~~evSAktg~g-I~elf~~L~~~~ 170 (247)
T cd04143 120 GNKADRDFPREVQRDEVE------------QLVGG-DENCAYFEVSAKKNSN-LDEMFRALFSLA 170 (247)
T ss_pred EECccchhccccCHHHHH------------HHHHh-cCCCEEEEEeCCCCCC-HHHHHHHHHHHh
Confidence 999998642111111110 00000 1112345689999999 999999998755
No 309
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.44 E-value=1.7e-06 Score=79.36 Aligned_cols=104 Identities=14% Similarity=0.094 Sum_probs=56.8
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhc----cCCeeEEEEeCccCCCCc
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDGHAKG 256 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~----~~~i~~vVltK~D~~~~~ 256 (494)
+.+.|.||||..... .+.. .....+|.+++|.|.+......+ ....+.. ..+ ..+|.||.|.....
T Consensus 49 ~~l~i~D~~g~~~~~-~~~~-----~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~-iilvgnK~Dl~~~~ 121 (161)
T cd04117 49 VRIQIWDTAGQERYQ-TITK-----QYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQ-KILIGNKADEEQKR 121 (161)
T ss_pred EEEEEEeCCCcHhHH-hhHH-----HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccccccc
Confidence 567899999964322 1111 12346899999999875322111 1111111 233 48899999975331
Q ss_pred cchhHHHHhcCCCeEEeccccccc-cccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 257 GGALSAVAATKSPVIFIGTGEHMD-EFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 257 g~~ls~~~~~g~Pi~fi~~Ge~i~-~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
....... +.+. .+. .+...+|+..|.| ++.+++.+.+.
T Consensus 122 ~v~~~~~-------------~~~~~~~~--~~~~e~Sa~~~~~-v~~~f~~l~~~ 160 (161)
T cd04117 122 QVGDEQG-------------NKLAKEYG--MDFFETSACTNSN-IKESFTRLTEL 160 (161)
T ss_pred CCCHHHH-------------HHHHHHcC--CEEEEEeCCCCCC-HHHHHHHHHhh
Confidence 1100111 1111 111 2335689999998 99998887653
No 310
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.43 E-value=4.3e-07 Score=87.78 Aligned_cols=119 Identities=16% Similarity=0.249 Sum_probs=66.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|.+||||||++|.+. |.++.-..... ...+. .+..+.. ...
T Consensus 2 ~IlllG~tGsGKSs~~N~il------g~~~f~~~~~~---------~~~t~--~~~~~~~-----------------~~~ 47 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSIL------GKEVFKSGSSA---------KSVTQ--ECQKYSG-----------------EVD 47 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHH------TSS-SS--TTT---------SS--S--S-EEEEE-----------------EET
T ss_pred EEEEECCCCCCHHHHHHHHh------cccceeecccc---------CCccc--ccceeee-----------------eec
Confidence 48999999999999999998 87763222100 00011 1111110 013
Q ss_pred CCcEEEEeCCCCCch---hHHHHHHHHHHHHh--cCCCEEEEEecCCCcc-cHHHHHH----HHhcc-CCeeEEEEeCcc
Q 011076 183 NCDLIIVDTSGRHKQ---EAALFEEMRQVSEA--TNPDLVIFVMDSSIGQ-AAFDQAQ----AFKQS-VSVGAVIVTKMD 251 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~---~~~l~~el~~i~~~--~~~d~vllVvDa~~g~-~~~~~~~----~f~~~-~~i~~vVltK~D 251 (494)
+..+.+|||||.... ++...+++...... -.++.++||++...-. .....++ .|... ..-+.||+|..|
T Consensus 48 g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d 127 (212)
T PF04548_consen 48 GRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIWKHTIVVFTHAD 127 (212)
T ss_dssp TEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGG
T ss_pred ceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHHhHhhHHhhhcc
Confidence 678899999998653 34555666543332 3478999999987322 1222222 33332 344689999998
Q ss_pred CCCC
Q 011076 252 GHAK 255 (494)
Q Consensus 252 ~~~~ 255 (494)
....
T Consensus 128 ~~~~ 131 (212)
T PF04548_consen 128 ELED 131 (212)
T ss_dssp GGTT
T ss_pred cccc
Confidence 6543
No 311
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.43 E-value=2.4e-06 Score=84.58 Aligned_cols=184 Identities=19% Similarity=0.215 Sum_probs=100.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHH
Q 011076 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (494)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~ 178 (494)
..|-.|+++|.+|+|||+|||+|- ....+.|..|..++ +|..- ..
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF---~~~~~~v~~vg~~t---------------------------~~~~~-----~~ 81 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALF---QGEVKEVSKVGVGT---------------------------DITTR-----LR 81 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHH---hccCceeeecccCC---------------------------Cchhh-----HH
Confidence 345567799999999999999997 11223343332211 00000 00
Q ss_pred HhccCCcEEEEeCCCCCch---hHHHHHHHHHHHHhcCCCEEEEEecCCCcc--cHHHHHHHHh-ccC-CeeEEEEeCcc
Q 011076 179 FKKENCDLIIVDTSGRHKQ---EAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFK-QSV-SVGAVIVTKMD 251 (494)
Q Consensus 179 ~~~~~~dvIIIDTaG~~~~---~~~l~~el~~i~~~~~~d~vllVvDa~~g~--~~~~~~~~f~-~~~-~i~~vVltK~D 251 (494)
..-++--++|.||||..+. |.+..+-...+ .-+.|.+++++|+.... ...+.++... ... ....+++|..|
T Consensus 82 ~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~--l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D 159 (296)
T COG3596 82 LSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDY--LPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQAD 159 (296)
T ss_pred hhccccceEEecCCCcccchhhhHHHHHHHHHH--hhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhh
Confidence 0012345799999999763 32232222211 33568899999986321 1222222211 112 33589999999
Q ss_pred CCCCccchhHHHHhcCCCeEEec--cccccc----cccccCccchhhcccCCCCchHHHHHHHHhCCCCCchHHHhhh
Q 011076 252 GHAKGGGALSAVAATKSPVIFIG--TGEHMD----EFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKL 323 (494)
Q Consensus 252 ~~~~~g~~ls~~~~~g~Pi~fi~--~Ge~i~----~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~~~~~~~~~~~ 323 (494)
...++ -++-..-+.|..-+- +-++.+ -+.+-+|..+++..++.| ++.|+..+-..+|.+...-.+.++
T Consensus 160 ~a~p~---~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wg-l~~l~~ali~~lp~e~rs~~a~~~ 233 (296)
T COG3596 160 RAEPG---REWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWG-LKELVRALITALPVEARSPLAARL 233 (296)
T ss_pred hhccc---cccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCcc-HHHHHHHHHHhCcccccchhhhhh
Confidence 86653 000000111110000 002221 234567888889899999 999999999999865444444444
No 312
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.42 E-value=1.5e-06 Score=83.53 Aligned_cols=107 Identities=13% Similarity=0.075 Sum_probs=59.5
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHh----ccCCeeEEEEeCccCCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK----QSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~----~~~~i~~vVltK~D~~~~ 255 (494)
.+.+.|.||||..... .+.. .....+|.+++|.|.+......+ ....+. ...++ .+|.||+|....
T Consensus 48 ~v~l~iwDtaGqe~~~-----~l~~-~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~pi-ilVgNK~DL~~~ 120 (202)
T cd04120 48 KIRLQIWDTAGQERFN-----SITS-AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAEL-LLVGNKLDCETD 120 (202)
T ss_pred EEEEEEEeCCCchhhH-----HHHH-HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcE-EEEEECcccccc
Confidence 4678899999975322 1111 22347899999999885432211 112222 12344 889999998532
Q ss_pred ccchhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
........ +.. ..+. ..+...+|++.|.| ++++++++.+.+
T Consensus 121 ~~v~~~~~-------------~~~a~~~~-~~~~~etSAktg~g-V~e~F~~l~~~~ 162 (202)
T cd04120 121 REISRQQG-------------EKFAQQIT-GMRFCEASAKDNFN-VDEIFLKLVDDI 162 (202)
T ss_pred cccCHHHH-------------HHHHHhcC-CCEEEEecCCCCCC-HHHHHHHHHHHH
Confidence 11100000 111 0110 12334589999999 999888876543
No 313
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.42 E-value=1.8e-06 Score=88.56 Aligned_cols=30 Identities=10% Similarity=-0.048 Sum_probs=25.2
Q ss_pred cCccchhhcccCCCCchHHHH-HHHHhCCCCC
Q 011076 285 FDVKPFVSRLLGMGDWSGFMD-KIHEVVPMDQ 315 (494)
Q Consensus 285 f~p~~~vs~~~G~Gdi~~L~e-~i~~~~~~~~ 315 (494)
+.+..++|+..+.+ +..|.+ .+.+++|+..
T Consensus 242 ~~~iI~iSA~~e~~-L~~L~~~~i~~~lPe~~ 272 (318)
T cd01899 242 DEIVVPTSAEAELA-LRRAAKQGLIKYDPGDS 272 (318)
T ss_pred CCeEEEEeCccccc-HHHHHHhhHHHhCCCCC
Confidence 55678899999999 999998 6999998653
No 314
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.42 E-value=9.2e-07 Score=82.10 Aligned_cols=108 Identities=16% Similarity=0.084 Sum_probs=59.8
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHHhc-cC---CeeEEEEeCccCCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ-SV---SVGAVIVTKMDGHAK 255 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~~-~~---~i~~vVltK~D~~~~ 255 (494)
.+.+.|.||||..... .+. ......+|.+++|.|++...... .....+.+ .. .+..+|.||.|....
T Consensus 48 ~~~l~i~Dt~G~~~~~-----~~~-~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~ 121 (170)
T cd04108 48 PFSLQLWDTAGQERFK-----CIA-STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121 (170)
T ss_pred EEEEEEEeCCChHHHH-----hhH-HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcc
Confidence 3568899999975322 111 12244789999999997532221 12222221 11 234899999998543
Q ss_pred ccch-hHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 256 GGGA-LSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 256 ~g~~-ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.... .... +... ..+. .+...+|+..|.| ++.+++.+.+.+
T Consensus 122 ~~~~~~~~~------------~~~~~~~~~--~~~~e~Sa~~g~~-v~~lf~~l~~~~ 164 (170)
T cd04108 122 AQYALMEQD------------AIKLAAEMQ--AEYWSVSALSGEN-VREFFFRVAALT 164 (170)
T ss_pred ccccccHHH------------HHHHHHHcC--CeEEEEECCCCCC-HHHHHHHHHHHH
Confidence 2110 0000 0001 1111 2334679999999 999988886654
No 315
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=98.41 E-value=2.8e-06 Score=78.45 Aligned_cols=134 Identities=15% Similarity=0.152 Sum_probs=69.1
Q ss_pred CCCcHHHHHHHHHHHHHhcCCceEEEEcccCcch----hHHHHHh-------hhhccCcceeccC---------CCCChH
Q 011076 110 QGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG----AFDQLKQ-------NATKAKIPFYGSY---------TESDPV 169 (494)
Q Consensus 110 ~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~----a~~qLk~-------~~~~~~i~~~~~~---------~~~dp~ 169 (494)
+|+||||++..|+.+|+++|+||+++.+...... ..+.+.. +.....+.+.... ......
T Consensus 7 ~~~GKT~va~~L~~~l~~~g~~V~~~kP~~~~~~~~d~d~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 86 (166)
T TIGR00347 7 TGVGKTVASSALAAKLKKAGYSVGYYKPVQTGIEKTNSDALLLQNISGTALDWDEVNPYAFALPLSPHIAADQEGRPIDL 86 (166)
T ss_pred CCccHHHHHHHHHHHHHHCCCcEEEEEeeeeCCCCCchHHHHHHHHcCCCCchhccCCeeeCCCCChHHHHHHhCCCCCH
Confidence 6999999999999999999999999743221111 1111111 1110001110000 000001
Q ss_pred HHHHHHHHHHhccCCcEEEEeCCCCCchh--HH-HHHHHHHHHHhcCCCEEEEEecCCCccc--HHHHHHHHhc-cCCee
Q 011076 170 RIAVEGVETFKKENCDLIIVDTSGRHKQE--AA-LFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQ-SVSVG 243 (494)
Q Consensus 170 ~i~~~~l~~~~~~~~dvIIIDTaG~~~~~--~~-l~~el~~i~~~~~~d~vllVvDa~~g~~--~~~~~~~f~~-~~~i~ 243 (494)
....+.+..+. ++||++|||+||..... .. ... .+.... .+.+++|+++..+.- .....+.+++ .+++.
T Consensus 87 ~~i~~~~~~l~-~~~D~viid~~g~~~~~~~~~~~~~---dl~~~~-~~~vilV~~~~~~~~~~~~~~~~~l~~~~~~i~ 161 (166)
T TIGR00347 87 EELSKHLRTLE-QKYDFVLVEGAGGLCVPITEEYTTA---DLIKLL-QLPVILVVRVKLGTINHTLLTVEHARQTGLTLA 161 (166)
T ss_pred HHHHHHHHHHH-hcCCEEEEEcCCccccCCCCCCcHH---HHHHHh-CCCEEEEECCCCcHHHHHHHHHHHHHHCCCCeE
Confidence 11233444443 67999999999863311 11 111 122222 345788998865531 1122334433 46778
Q ss_pred EEEEe
Q 011076 244 AVIVT 248 (494)
Q Consensus 244 ~vVlt 248 (494)
++|+|
T Consensus 162 gvv~N 166 (166)
T TIGR00347 162 GVILN 166 (166)
T ss_pred EEEeC
Confidence 99987
No 316
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.41 E-value=3.1e-06 Score=89.44 Aligned_cols=50 Identities=8% Similarity=0.113 Sum_probs=33.5
Q ss_pred cCccchhhcccCCCCchH-HHHHHHHhCC-------CCCchHHHhhhhcchhhHHHHHHHHH
Q 011076 285 FDVKPFVSRLLGMGDWSG-FMDKIHEVVP-------MDQQPELLQKLSEGNFTLRIMYEQFQ 338 (494)
Q Consensus 285 f~p~~~vs~~~G~Gdi~~-L~e~i~~~~~-------~~~~~~~~~~~~~~~f~~~d~~~ql~ 338 (494)
+.+..++|+..+.+ +.. |.+.+.+++| .++.++..++ ..|+.+ .++..++
T Consensus 244 ~~~vvpISA~~e~~-l~~~l~~~i~~~lp~~p~~~~~d~ltd~~~r--~~E~IR-k~l~~~g 301 (396)
T PRK09602 244 YYIVVPTSAEAELA-LRRAAKAGLIDYIPGDSDFEILGELSEKQKK--ALEYIR-EVLKKYG 301 (396)
T ss_pred CCcEEEEcchhhhh-HHHHHHHhHHhhCCCCCccCccccCCHHHHH--HHHHHH-HHHHHhC
Confidence 45567899999998 888 8888888765 3334555555 445555 5555543
No 317
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=5.5e-07 Score=95.77 Aligned_cols=172 Identities=16% Similarity=0.183 Sum_probs=105.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
+.+.+|-.--=|||||+-.|...- | .|+.+.......|.|.. -..-||.+....+. +.+-..
T Consensus 61 RNfsIIAHVDHGKSTLaDrLLe~t---g----~i~~~~~q~q~LDkl~v-ERERGITIkaQtas----------ify~~~ 122 (650)
T KOG0462|consen 61 RNFSIIAHVDHGKSTLADRLLELT---G----TIDNNIGQEQVLDKLQV-ERERGITIKAQTAS----------IFYKDG 122 (650)
T ss_pred cceEEEEEecCCcchHHHHHHHHh---C----CCCCCCchhhhhhhhhh-hhhcCcEEEeeeeE----------EEEEcC
Confidence 457777788889999998887321 2 44454444444444332 12234433221110 000001
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHHhccCCeeEEEEeCccCCC-Ccc
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQSVSVGAVIVTKMDGHA-KGG 257 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~~~~~i~~vVltK~D~~~-~~g 257 (494)
..|-+-+|||||......+..+.+ ..++-+++||||+.|..+. +...+|...+.+ +.|+||+|... +..
T Consensus 123 ~~ylLNLIDTPGHvDFs~EVsRsl------aac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~i-IpVlNKIDlp~adpe 195 (650)
T KOG0462|consen 123 QSYLLNLIDTPGHVDFSGEVSRSL------AACDGALLVVDASQGVQAQTVANFYLAFEAGLAI-IPVLNKIDLPSADPE 195 (650)
T ss_pred CceEEEeecCCCcccccceehehh------hhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeE-EEeeeccCCCCCCHH
Confidence 247889999999986654433322 2468899999999986554 345677666666 88999999843 322
Q ss_pred chhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCCC
Q 011076 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (494)
Q Consensus 258 ~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~ 313 (494)
...+-.. .+-++. -.+..++|+++|.| +++++++|-+.+|.
T Consensus 196 ~V~~q~~-------------~lF~~~-~~~~i~vSAK~G~~-v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 196 RVENQLF-------------ELFDIP-PAEVIYVSAKTGLN-VEELLEAIIRRVPP 236 (650)
T ss_pred HHHHHHH-------------HHhcCC-ccceEEEEeccCcc-HHHHHHHHHhhCCC
Confidence 2222221 111122 23557899999999 99999999999964
No 318
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.40 E-value=6.5e-07 Score=82.09 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
...|+++|.|||||||++|.|. +.+.+.++.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~------~~~~~~~~~ 132 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLR------SKKVCKVAP 132 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHh------cCCceeeCC
Confidence 4568899999999999999999 877777766
No 319
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.40 E-value=2.3e-06 Score=83.01 Aligned_cols=152 Identities=13% Similarity=0.047 Sum_probs=82.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
....|+++|.+||||||+++++.. +.-. +.| ....++.++..... .
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~-----~~f~-----~~~-----------~~tig~~~~~~~~~-------------~ 57 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLT-----GEFE-----KKY-----------EPTIGVEVHPLDFF-------------T 57 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhh-----CCCC-----Ccc-----------CCccceeEEEEEEE-------------E
Confidence 345799999999999999998762 1100 000 01112222110000 0
Q ss_pred hccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHH---hccCCeeEEEEeCccCC
Q 011076 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAF---KQSVSVGAVIVTKMDGH 253 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f---~~~~~i~~vVltK~D~~ 253 (494)
....+.+.|.||||..... .+.. .....++.+++|.|.+....... ....+ ....++ .+|.||+|..
T Consensus 58 ~~~~~~l~i~Dt~G~~~~~-----~~~~-~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~pi-ilvgNK~Dl~ 130 (219)
T PLN03071 58 NCGKIRFYCWDTAGQEKFG-----GLRD-GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVK 130 (219)
T ss_pred CCeEEEEEEEECCCchhhh-----hhhH-HHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcE-EEEEEchhhh
Confidence 0124678899999975322 1111 11336788999999886432221 11222 223455 8999999985
Q ss_pred CCccch--hHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 254 AKGGGA--LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 254 ~~~g~~--ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.+.-.. +.... ....+...+|+..|.| +..+++.+.+.+
T Consensus 131 ~~~v~~~~~~~~~------------------~~~~~~~e~SAk~~~~-i~~~f~~l~~~~ 171 (219)
T PLN03071 131 NRQVKAKQVTFHR------------------KKNLQYYEISAKSNYN-FEKPFLYLARKL 171 (219)
T ss_pred hccCCHHHHHHHH------------------hcCCEEEEcCCCCCCC-HHHHHHHHHHHH
Confidence 331100 01110 0111234579999999 999998887655
No 320
>PRK13351 elongation factor G; Reviewed
Probab=98.39 E-value=4.1e-06 Score=94.63 Aligned_cols=129 Identities=18% Similarity=0.196 Sum_probs=66.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
-+.|+++|..|+|||||+.+|..+...-. +..-++...+ ...+ +. .....++.+.... ..+.
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~-~~~~v~~~~~-~~d~--~~-~e~~r~~ti~~~~-------------~~~~ 69 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIH-KMGEVEDGTT-VTDW--MP-QEQERGITIESAA-------------TSCD 69 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCcc-ccccccCCcc-cCCC--CH-HHHhcCCCcccce-------------EEEE
Confidence 35799999999999999999985432100 1111110000 0000 00 0000111100000 0111
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH--HHHHHHhc-cCCeeEEEEeCccCCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAFKQ-SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~--~~~~~f~~-~~~i~~vVltK~D~~~ 254 (494)
..++.+.|+||||...... +.. ......|.+++|+|++.+.... .....+.. ..|+ .+|+||+|...
T Consensus 70 ~~~~~i~liDtPG~~df~~----~~~--~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~-iiviNK~D~~~ 139 (687)
T PRK13351 70 WDNHRINLIDTPGHIDFTG----EVE--RSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPR-LIFINKMDRVG 139 (687)
T ss_pred ECCEEEEEEECCCcHHHHH----HHH--HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCE-EEEEECCCCCC
Confidence 2367889999999864322 221 2233569999999998764322 22222222 3455 88999999753
No 321
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.39 E-value=1.4e-06 Score=81.35 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=60.4
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHH----HHHHh---ccCCeeEEEEeCccCCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ----AQAFK---QSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~----~~~f~---~~~~i~~vVltK~D~~~~ 255 (494)
.+.+.|.||||..... .+.. .....+|.+++|.|.+......+. ...+. ...|+ .+|.||.|....
T Consensus 48 ~~~l~i~Dt~G~~~~~-----~~~~-~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~pi-ilvgnK~Dl~~~ 120 (174)
T cd01871 48 PVNLGLWDTAGQEDYD-----RLRP-LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTKLDLRDD 120 (174)
T ss_pred EEEEEEEECCCchhhh-----hhhh-hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEeeChhhccC
Confidence 4677899999964322 1111 123468999999999754322111 11122 12444 889999998532
Q ss_pred ccchhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHH
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~ 309 (494)
....-........+|. ...|+.+ .++. ..+..-+|+..|.| ++.+++.+.+
T Consensus 121 ~~~~~~~~~~~~~~v~-~~~~~~~~~~~~-~~~~~e~Sa~~~~~-i~~~f~~l~~ 172 (174)
T cd01871 121 KDTIEKLKEKKLTPIT-YPQGLAMAKEIG-AVKYLECSALTQKG-LKTVFDEAIR 172 (174)
T ss_pred hhhHHHHhhccCCCCC-HHHHHHHHHHcC-CcEEEEecccccCC-HHHHHHHHHH
Confidence 1111111110001110 0011111 1121 12335589999999 9999888764
No 322
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.39 E-value=9.2e-07 Score=94.88 Aligned_cols=66 Identities=18% Similarity=0.318 Sum_probs=41.1
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc---------cHHHHHHHHh-ccCCeeEEEEeCcc
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---------AAFDQAQAFK-QSVSVGAVIVTKMD 251 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~---------~~~~~~~~f~-~~~~i~~vVltK~D 251 (494)
.++.+.||||||... +..++ +..+..+|.+++|+|+..|. ...+.+.... ..++..++++||+|
T Consensus 83 ~~~~i~liDtPGh~d----f~~~~--~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD 156 (447)
T PLN00043 83 TKYYCTVIDAPGHRD----FIKNM--ITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 156 (447)
T ss_pred CCEEEEEEECCCHHH----HHHHH--HhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEccc
Confidence 467889999999643 33333 23345789999999998752 1222222111 22443477899999
Q ss_pred CC
Q 011076 252 GH 253 (494)
Q Consensus 252 ~~ 253 (494)
..
T Consensus 157 ~~ 158 (447)
T PLN00043 157 AT 158 (447)
T ss_pred CC
Confidence 75
No 323
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.39 E-value=7.1e-07 Score=83.32 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=61.4
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH----HHHHHh---ccCCeeEEEEeCccCCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFK---QSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~----~~~~f~---~~~~i~~vVltK~D~~~~ 255 (494)
.+.+.|.||||..... .+.. .....+|.+++|.|.+......+ ....+. ...|+ .+|.||.|....
T Consensus 48 ~~~l~i~Dt~G~~~~~-----~~~~-~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~pi-ilvgnK~Dl~~~ 120 (175)
T cd01874 48 PYTLGLFDTAGQEDYD-----RLRP-LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPF-LLVGTQIDLRDD 120 (175)
T ss_pred EEEEEEEECCCccchh-----hhhh-hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEECHhhhhC
Confidence 4678899999985432 1111 12346899999999875432211 111222 23445 899999997543
Q ss_pred ccchhHHHHhc-CCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHH
Q 011076 256 GGGALSAVAAT-KSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (494)
Q Consensus 256 ~g~~ls~~~~~-g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~ 309 (494)
. ...+..... ..+|. ...|+.+..-....+...+|++.|.| +..+++.+..
T Consensus 121 ~-~~~~~l~~~~~~~v~-~~~~~~~a~~~~~~~~~e~SA~tg~~-v~~~f~~~~~ 172 (175)
T cd01874 121 P-STIEKLAKNKQKPIT-PETGEKLARDLKAVKYVECSALTQKG-LKNVFDEAIL 172 (175)
T ss_pred h-hhHHHhhhccCCCcC-HHHHHHHHHHhCCcEEEEecCCCCCC-HHHHHHHHHH
Confidence 1 111111100 01110 00111111101123445689999999 9999988765
No 324
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.39 E-value=1.1e-06 Score=91.68 Aligned_cols=219 Identities=15% Similarity=0.182 Sum_probs=110.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC-cchhHHHHHhhhhccCcceeccC---CCCChHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF-RAGAFDQLKQNATKAKIPFYGSY---TESDPVRIAVEGV 176 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~-r~~a~~qLk~~~~~~~i~~~~~~---~~~dp~~i~~~~l 176 (494)
.-.|.++|+-++||||+++++. +.=|+=--.|.| |..|.| .+|-.... +.++|.-+-.+|+
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm------~q~VlP~i~~~~~k~Ra~D---------ELpqs~~GktItTTePkfvP~kAv 81 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFM------ELLVLPNISNEYDKERAQD---------ELPQSAAGKTIMTTEPKFVPNEAV 81 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHH------hhhccccccchhHHhHHHh---------ccCcCCCCCCcccCCCccccCcce
Confidence 4569999999999999999999 542211111222 222222 33333333 4556655444444
Q ss_pred HHHhc--cCCcEEEEeCCCCCchhH-----------------------HHHHHHHHHHHhc-CCCEEEEEe-cCCCc---
Q 011076 177 ETFKK--ENCDLIIVDTSGRHKQEA-----------------------ALFEEMRQVSEAT-NPDLVIFVM-DSSIG--- 226 (494)
Q Consensus 177 ~~~~~--~~~dvIIIDTaG~~~~~~-----------------------~l~~el~~i~~~~-~~d~vllVv-Da~~g--- 226 (494)
+-.-. -...+.+|||+|+..... ....|+-...... .++..++|. |++.+
T Consensus 82 EI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~ 161 (492)
T TIGR02836 82 EININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIP 161 (492)
T ss_pred EEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccc
Confidence 33221 247899999999843210 0111111112222 477778888 88632
Q ss_pred ---c--cHHHHHHHHhccCCeeEEEEeCccCC-CCccchh-HHHHhcCCCeEEeccccccccccccCccchhhcccCCCC
Q 011076 227 ---Q--AAFDQAQAFKQSVSVGAVIVTKMDGH-AKGGGAL-SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 299 (494)
Q Consensus 227 ---~--~~~~~~~~f~~~~~i~~vVltK~D~~-~~~g~~l-s~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gd 299 (494)
. ...+....+++.-.+..+|+||.|-. ....... ......+.|+.+++.-+ +...|
T Consensus 162 Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~~-----------------l~~~D 224 (492)
T TIGR02836 162 REDYVEAEERVIEELKELNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVES-----------------MRESD 224 (492)
T ss_pred cccchHHHHHHHHHHHhcCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHHH-----------------cCHHH
Confidence 1 12335566665544559999999943 2221122 23333455655554311 23345
Q ss_pred chHHHHHHHHhCCCCC----chHHHhhhhcchhhHHHHH----HHHHHHhccCChhHHhh
Q 011076 300 WSGFMDKIHEVVPMDQ----QPELLQKLSEGNFTLRIMY----EQFQNILKMGPIGQVFS 351 (494)
Q Consensus 300 i~~L~e~i~~~~~~~~----~~~~~~~~~~~~f~~~d~~----~ql~~~~~~g~~~~~~~ 351 (494)
+..+++.+.--+|-.+ ..++.+.+....-...+++ +.++.+.++..+.....
T Consensus 225 I~~il~~vL~EFPv~Ei~~~~P~Wve~L~~~Hwlk~~~~~~i~~~~~~i~~irDv~~~~~ 284 (492)
T TIGR02836 225 ILSVLEEVLYEFPILEINIDLPSWVEVLDENHWLKENFQSSVKETVKDVYRLRDVDNVVG 284 (492)
T ss_pred HHHHHHHHHhcCCceEEEeeCchHHHhcCCCchHHHHHHHHHHHHHHhhhHHhhHHhhhc
Confidence 5555555554444221 2334444444433333333 33444555555555554
No 325
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.37 E-value=9.9e-07 Score=83.18 Aligned_cols=114 Identities=25% Similarity=0.330 Sum_probs=61.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+|+||.|||||++..+|.. |..+.-++. . ..++.+.. ..
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~-----~~~~~T~tS-------------~--e~n~~~~~--~~--------------- 45 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVN-----GKTVPTVTS-------------M--ENNIAYNV--NN--------------- 45 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHH-----SS---B----------------S--SEEEECCG--SS---------------
T ss_pred CceEEEEcCCCCCHHHHHHHHhc-----CCcCCeecc-------------c--cCCceEEe--ec---------------
Confidence 35799999999999999999994 322211111 0 01111100 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc-HHHHHHHHh---------ccCCeeEEEEeCc
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA-AFDQAQAFK---------QSVSVGAVIVTKM 250 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~-~~~~~~~f~---------~~~~i~~vVltK~ 250 (494)
..+..+-+||+||.......+.+++. ....+..++||+|++.-+. ..+.++.+. ...++..|++||.
T Consensus 46 ~~~~~~~lvD~PGH~rlr~~~~~~~~---~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~ 122 (181)
T PF09439_consen 46 SKGKKLRLVDIPGHPRLRSKLLDELK---YLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQ 122 (181)
T ss_dssp TCGTCECEEEETT-HCCCHHHHHHHH---HHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-T
T ss_pred CCCCEEEEEECCCcHHHHHHHHHhhh---chhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCc
Confidence 12456789999998766655555432 2334678999999985332 222332211 1122348899999
Q ss_pred cCCC
Q 011076 251 DGHA 254 (494)
Q Consensus 251 D~~~ 254 (494)
|...
T Consensus 123 Dl~~ 126 (181)
T PF09439_consen 123 DLFT 126 (181)
T ss_dssp TSTT
T ss_pred cccc
Confidence 9854
No 326
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.37 E-value=1.2e-06 Score=85.45 Aligned_cols=164 Identities=17% Similarity=0.132 Sum_probs=86.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|.+|||||+++..++ +..- .+.|-|...+. + ...+.. . ..
T Consensus 3 KIvvvGd~~vGKTsLi~~~~------~~~f----~~~y~pTi~~~---~----~~~~~~--~----------------~~ 47 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFA------KDAY----PGSYVPTVFEN---Y----TASFEI--D----------------KR 47 (222)
T ss_pred EEEEECCCCCCHHHHHHHHH------cCCC----CCccCCccccc---e----EEEEEE--C----------------CE
Confidence 58999999999999999998 2110 11122211000 0 001100 0 12
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHH-------hccCCeeEEEEeCccCCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAF-------KQSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f-------~~~~~i~~vVltK~D~~~~ 255 (494)
.+.+.|.||+|....+ .+.. .....+|.+++|.|.+......+....+ ....|+ .+|.||+|....
T Consensus 48 ~v~L~iwDt~G~e~~~-----~l~~-~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~pi-iLVgnK~DL~~~ 120 (222)
T cd04173 48 RIELNMWDTSGSSYYD-----NVRP-LAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKV-VLVGCKLDMRTD 120 (222)
T ss_pred EEEEEEEeCCCcHHHH-----HHhH-HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCE-EEEEECcccccc
Confidence 4678899999975322 1211 2234789999999988653322221222 122444 889999998543
Q ss_pred ccchhHHHHhc-CCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 256 GGGALSAVAAT-KSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 256 ~g~~ls~~~~~-g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
.. .+...... -.||.. ..|+.+.......+..-.|+..+.+++.++++.+...
T Consensus 121 ~~-~~~~~~~~~~~pIs~-e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 121 LA-TLRELSKQRLIPVTH-EQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred hh-hhhhhhhccCCccCH-HHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHH
Confidence 21 11111111 123221 1344443322222444578888885588888887664
No 327
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=98.35 E-value=2.3e-06 Score=84.63 Aligned_cols=165 Identities=18% Similarity=0.210 Sum_probs=92.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchh------------HHHHHhhhh--c-----------cC
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA------------FDQLKQNAT--K-----------AK 156 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a------------~~qLk~~~~--~-----------~~ 156 (494)
+.|+|.|..|.||||++.+|+..|++.|+||+.|-|||....+ .+.++.... . .+
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~DST~~ll~g~~~~Tvld~~~~~~~~e~~~ledvv~~G~~g 80 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKADSTRLLLGGKAIPTVLDLLREKGSVEDLELEDVVKEGFKG 80 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSSTSSCHHHTTSS-SBHHHHHHHHCTGGGS-HHHHSEEEGGG
T ss_pred CeEEEEcCCCcccChhhhHHHHHHHhccceeeEecccCCCccceeccCCccchhHHHHHhhccccccCCCCcEEEeccCC
Confidence 3599999999999999999999999999999999999844222 344433322 1 11
Q ss_pred cceeccCCCCCh--------HHHHHHHHHHHh--ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCc
Q 011076 157 IPFYGSYTESDP--------VRIAVEGVETFK--KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG 226 (494)
Q Consensus 157 i~~~~~~~~~dp--------~~i~~~~l~~~~--~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g 226 (494)
+...... ...| +..+.+.+++.. ..++|+|+.|.-|-.-..-..+. .+.-.++++++|.....-
T Consensus 81 i~CvEsG-GPePGvGCaGRGI~~a~~~L~~~~~~~~~~D~v~yDVLGDVVCGGFamP-----ir~g~a~evyIVtSge~m 154 (273)
T PF00142_consen 81 ILCVESG-GPEPGVGCAGRGIITALELLEELGAYEDDYDFVLYDVLGDVVCGGFAMP-----IREGYAQEVYIVTSGEFM 154 (273)
T ss_dssp EEEEE----SCTTSSBHHHHHHHHHHHHHHTTTSTSTSSEEEEEEESSSSCTTTTHH-----HHTTS-SEEEEEEBSSHH
T ss_pred ceeeccC-CCcccccccccchhhhhhhHHhhhhhhcCCceEEEEEEeeeEEeeeehh-----hhhccCCEEEEEecCcHH
Confidence 2111111 1122 223444444432 24589999998775321100000 111246888888776421
Q ss_pred --ccHHHHHH---HHhc--cCCeeEEEEeCccCCCCccchhHHHHhcCCCeEE
Q 011076 227 --QAAFDQAQ---AFKQ--SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIF 272 (494)
Q Consensus 227 --~~~~~~~~---~f~~--~~~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~f 272 (494)
..+.+..+ .|.. ..++.++|+|.-+.......+-.++..++.||..
T Consensus 155 slyAANNI~~~i~~~~~~g~~~l~GiI~N~r~~~~e~~~v~~fa~~~g~~i~~ 207 (273)
T PF00142_consen 155 SLYAANNICKAIKNFADRGGARLGGIICNSRNVDDEEEIVEDFAERIGTPIIA 207 (273)
T ss_dssp HHHHHHHHHHHHHHHCTTSS-EEEEEEEE-SSSTTHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHHHhccCCCceEEEEecCCCCCCchHHHHHHHHHcCCcEEE
Confidence 12233333 3432 2357899999665443334455677778888754
No 328
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.35 E-value=7e-06 Score=82.71 Aligned_cols=150 Identities=21% Similarity=0.204 Sum_probs=91.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
..+|++||-+|+||||++++|.. .+-.-..-+..+.||.+.. ...|
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~-Aal~p~drLFATLDpT~h~-----------a~Lp---------------------- 223 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTK-AALYPNDRLFATLDPTLHS-----------AHLP---------------------- 223 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHh-hhcCccchhheeccchhhh-----------ccCC----------------------
Confidence 46899999999999999999992 2222334455555553221 1111
Q ss_pred ccCCcEEEEeCCCCCc-hhHHHHHHHH-HHHHhcCCCEEEEEecCCCcccHH---HHHHHHhccCCe--------eEEEE
Q 011076 181 KENCDLIIVDTSGRHK-QEAALFEEMR-QVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQSVSV--------GAVIV 247 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~-~~~~l~~el~-~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~~~~~i--------~~vVl 247 (494)
.+-.+++.||-|+.. ..-.+..... .+..+..+|.++.|+|.+...... .+...++ .+.+ -+=|-
T Consensus 224 -sg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~-~igv~~~pkl~~mieVd 301 (410)
T KOG0410|consen 224 -SGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLN-QIGVPSEPKLQNMIEVD 301 (410)
T ss_pred -CCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHH-hcCCCcHHHHhHHHhhc
Confidence 255789999999854 2344555554 344566899999999998653211 1222222 2222 12355
Q ss_pred eCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 248 TKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 248 tK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
||+|..+.. ..-++. -...+|++.|.| +++|++.+...+
T Consensus 302 nkiD~e~~~-----------------------~e~E~n-~~v~isaltgdg-l~el~~a~~~kv 340 (410)
T KOG0410|consen 302 NKIDYEEDE-----------------------VEEEKN-LDVGISALTGDG-LEELLKAEETKV 340 (410)
T ss_pred ccccccccc-----------------------CccccC-CccccccccCcc-HHHHHHHHHHHh
Confidence 666643220 111222 257899999999 999999887765
No 329
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=98.35 E-value=8.9e-07 Score=88.99 Aligned_cols=89 Identities=16% Similarity=0.190 Sum_probs=57.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCc----ch--hHHHHHhhhhccCc----ceeccCCCCChHHH
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR----AG--AFDQLKQNATKAKI----PFYGSYTESDPVRI 171 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r----~~--a~~qLk~~~~~~~i----~~~~~~~~~dp~~i 171 (494)
++|.|+|.+||||||++.+|+..|+++| +|++|..|+.. ++ .....+..+...-+ .+.......+
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~~~~~~g~Ds~~~~~aGa~~v~~~s~~~~~~~~~~~~---- 76 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMDTERLNPDGTDTGRHFDAGADVVYGLTDGEWVASGRDRS---- 76 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcCCCcCCCCCCCcHHHHHCCCcEEEEecCCeEEEEecCCC----
Confidence 4799999999999999999999999999 89999999854 44 22222322221100 0110011112
Q ss_pred HHHHHHHHhccCCcEEEEeCCCCCc
Q 011076 172 AVEGVETFKKENCDLIIVDTSGRHK 196 (494)
Q Consensus 172 ~~~~l~~~~~~~~dvIIIDTaG~~~ 196 (494)
..+.+..+. .++|+||||+++...
T Consensus 77 l~~~l~~l~-~~~D~vlVEG~k~~~ 100 (274)
T PRK14493 77 LDDALDDLA-PGMDYAVVEGFKDSR 100 (274)
T ss_pred HHHHHHhhC-cCCCEEEEECCCCCC
Confidence 223344443 479999999998864
No 330
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.35 E-value=5.2e-06 Score=76.18 Aligned_cols=96 Identities=24% Similarity=0.333 Sum_probs=57.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceE-EEEcccCcchhHH-------------HHHh-hhhccCcceeccCCC
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPA-LVCADTFRAGAFD-------------QLKQ-NATKAKIPFYGSYTE 165 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVa-iVs~D~~r~~a~~-------------qLk~-~~~~~~i~~~~~~~~ 165 (494)
+..|.+.|+|||||||++.+++..|.++|++|. +++....+-+-.. +|.. ...+..+.-|+.. .
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~-v 83 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVN-V 83 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEee-H
Confidence 456999999999999999999999999999986 5555432111100 0000 0001111111110 1
Q ss_pred CChHHHHHHHHHHHhccCCcEEEEeCCCCCchh
Q 011076 166 SDPVRIAVEGVETFKKENCDLIIVDTSGRHKQE 198 (494)
Q Consensus 166 ~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~ 198 (494)
.+.-.++..+++.+.. ..|+||||--|-....
T Consensus 84 ~~le~i~~~al~rA~~-~aDvIIIDEIGpMElk 115 (179)
T COG1618 84 EGLEEIAIPALRRALE-EADVIIIDEIGPMELK 115 (179)
T ss_pred HHHHHHhHHHHHHHhh-cCCEEEEecccchhhc
Confidence 1122356667776654 4799999999986554
No 331
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.34 E-value=2.4e-06 Score=90.22 Aligned_cols=139 Identities=17% Similarity=0.232 Sum_probs=81.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
..+++++||-||||||++.+++. -..|-+- + -+++|+.-. .+ ++
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vt------radvevq---p---------YaFTTksL~--vG----------------H~ 210 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVT------RADDEVQ---P---------YAFTTKLLL--VG----------------HL 210 (620)
T ss_pred CcCeEEEecCCCCCcHhhccccc------ccccccC---C---------cccccchhh--hh----------------hh
Confidence 35679999999999999998887 2222111 1 112222100 11 11
Q ss_pred hccCCcEEEEeCCCCCchh--HHHHHHHHHHHHhcC-CCEEEEEecCC--CcccHHHHHHHHhccC-----CeeEEEEeC
Q 011076 180 KKENCDLIIVDTSGRHKQE--AALFEEMRQVSEATN-PDLVIFVMDSS--IGQAAFDQAQAFKQSV-----SVGAVIVTK 249 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~--~~l~~el~~i~~~~~-~d~vllVvDa~--~g~~~~~~~~~f~~~~-----~i~~vVltK 249 (494)
......+.+|||||++... +.-.-||..|.+... ...|+|++|-+ .|....+++..|+.-- .+.++|+||
T Consensus 211 dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK 290 (620)
T KOG1490|consen 211 DYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNK 290 (620)
T ss_pred hhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeec
Confidence 1123457899999996543 223334554444322 45689999976 5777777887776532 457999999
Q ss_pred ccCCCCc------cchhHHHHhc-CCCeEEec
Q 011076 250 MDGHAKG------GGALSAVAAT-KSPVIFIG 274 (494)
Q Consensus 250 ~D~~~~~------g~~ls~~~~~-g~Pi~fi~ 274 (494)
+|..... ...++-...- +.||.-.+
T Consensus 291 ~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS 322 (620)
T KOG1490|consen 291 IDAMRPEDLDQKNQELLQTIIDDGNVKVVQTS 322 (620)
T ss_pred ccccCccccCHHHHHHHHHHHhccCceEEEec
Confidence 9975432 2233333333 36666555
No 332
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.33 E-value=1.9e-06 Score=81.19 Aligned_cols=111 Identities=11% Similarity=0.052 Sum_probs=59.7
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHh---ccCCeeEEEEeCccCCCCc
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK---QSVSVGAVIVTKMDGHAKG 256 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~---~~~~i~~vVltK~D~~~~~ 256 (494)
.+.+.|.||+|..... .+.. .....++.+++|+|.+......+ ....+. ....+ .+|.||+|.....
T Consensus 48 ~~~l~iwDt~G~~~~~-----~~~~-~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~ 120 (182)
T cd04128 48 EITFSIWDLGGQREFI-----NMLP-LVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADL 120 (182)
T ss_pred EEEEEEEeCCCchhHH-----HhhH-HHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccc
Confidence 3678899999975322 1111 12346899999999875432211 122221 22223 6889999984210
Q ss_pred c-chhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 257 G-GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 257 g-~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
. ....... ..++.+.+... .+...+|++.|.| ++.+++.+.+.+
T Consensus 121 ~~~~~~~~~---------~~~~~~a~~~~-~~~~e~SAk~g~~-v~~lf~~l~~~l 165 (182)
T cd04128 121 PPEEQEEIT---------KQARKYAKAMK-APLIFCSTSHSIN-VQKIFKIVLAKA 165 (182)
T ss_pred cchhhhhhH---------HHHHHHHHHcC-CEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 0 0000000 00111111111 3446689999999 999999886654
No 333
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.33 E-value=1.8e-06 Score=80.98 Aligned_cols=119 Identities=14% Similarity=0.098 Sum_probs=60.9
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHH----HH---hccCCeeEEEEeCccCCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQ----AF---KQSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~----~f---~~~~~i~~vVltK~D~~~~ 255 (494)
.+.+.|.||||..... .+.. .....++.+++|.|.+......+... .+ ....++ .+|.||.|+...
T Consensus 48 ~~~l~iwDt~G~~~~~-----~~~~-~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~i-ilVgnK~DL~~~ 120 (178)
T cd04131 48 RIELSLWDTSGSPYYD-----NVRP-LCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKV-LLVGCKTDLRTD 120 (178)
T ss_pred EEEEEEEECCCchhhh-----hcch-hhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCE-EEEEEChhhhcC
Confidence 4678899999964322 1111 12346899999999875432222112 12 222344 889999998543
Q ss_pred ccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHH
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~ 309 (494)
.+...........||.. ..|+.+..-....+-.-+|++.|.+++++++..+.+
T Consensus 121 ~~~~~~~~~~~~~~v~~-~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 121 LSTLMELSHQRQAPVSY-EQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred hhHHHHHHhcCCCCCCH-HHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHH
Confidence 22111111100112211 122222111111133457999998548888887765
No 334
>PLN03126 Elongation factor Tu; Provisional
Probab=98.32 E-value=3.3e-06 Score=91.25 Aligned_cols=126 Identities=20% Similarity=0.156 Sum_probs=68.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceE--EEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPA--LVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVa--iVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~ 178 (494)
...|+++|.+++|||||+++|...+..-+.+.. ....|... .+ -....+..-.. ..
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~---~E-r~rGiTi~~~~-~~----------------- 138 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAP---EE-RARGITINTAT-VE----------------- 138 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCCh---hH-HhCCeeEEEEE-EE-----------------
Confidence 356899999999999999999965432111110 00011110 00 01111111000 00
Q ss_pred HhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH--HHHHHHHh-ccCCeeEEEEeCccCCC
Q 011076 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFK-QSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 179 ~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~--~~~~~~f~-~~~~i~~vVltK~D~~~ 254 (494)
+..++..+.||||||... +..++ +..+..+|.+++|+|+..|... .+.+.... ..++...+++||+|...
T Consensus 139 ~~~~~~~i~liDtPGh~~----f~~~~--~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 139 YETENRHYAHVDCPGHAD----YVKNM--ITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 211 (478)
T ss_pred EecCCcEEEEEECCCHHH----HHHHH--HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccC
Confidence 111356889999999753 33333 2334468999999999876432 22222222 22443367899999864
No 335
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.31 E-value=6e-06 Score=86.54 Aligned_cols=174 Identities=18% Similarity=0.217 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHh--cCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQK--KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~--~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
+.|+++-.---||||++-+|.+.-.- .+..|+=-..|. ..+-..-||.+....+. +
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDS---------nDlEkERGITILaKnTa----------v--- 63 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDS---------NDLEKERGITILAKNTA----------V--- 63 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCc---------cchhhhcCcEEEeccce----------e---
Confidence 35888888888999999999743211 111221100110 11112234544432221 1
Q ss_pred hccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc---HHHHHHHHhccCCeeEEEEeCccCC-CC
Q 011076 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQSVSVGAVIVTKMDGH-AK 255 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~---~~~~~~~f~~~~~i~~vVltK~D~~-~~ 255 (494)
..+++.+-||||||......+..+- .. -.|.++++|||..|.- -.-.-++|...+++ +||+||+|.. ++
T Consensus 64 ~~~~~~INIvDTPGHADFGGEVERv----l~--MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~P-IVVvNKiDrp~Ar 136 (603)
T COG1217 64 NYNGTRINIVDTPGHADFGGEVERV----LS--MVDGVLLLVDASEGPMPQTRFVLKKALALGLKP-IVVINKIDRPDAR 136 (603)
T ss_pred ecCCeEEEEecCCCcCCccchhhhh----hh--hcceEEEEEEcccCCCCchhhhHHHHHHcCCCc-EEEEeCCCCCCCC
Confidence 1247888999999998665443332 22 3589999999997743 33355677777877 9999999984 33
Q ss_pred ccchhH----HHH-------hcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCCC
Q 011076 256 GGGALS----AVA-------ATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (494)
Q Consensus 256 ~g~~ls----~~~-------~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~ 313 (494)
...+.. ... ..+.||.|.+--.....+.+..+ ..|+..|++.|.+++|.
T Consensus 137 p~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~---------~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 137 PDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDE---------ADDMAPLFETILDHVPA 196 (603)
T ss_pred HHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCcccc---------ccchhHHHHHHHHhCCC
Confidence 322222 111 23567777664344433333222 24589999999999963
No 336
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.30 E-value=2.3e-06 Score=84.10 Aligned_cols=167 Identities=16% Similarity=0.142 Sum_probs=84.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|.+|||||+++..+. +..- .+.|.|...+. +.. .+.+ ..
T Consensus 14 ~KIvvvGd~~VGKTsLi~r~~------~~~F----~~~y~pTi~~~---~~~--~i~~--------------------~~ 58 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLA------KDCY----PETYVPTVFEN---YTA--GLET--------------------EE 58 (232)
T ss_pred EEEEEECCCCCcHHHHHHHHh------cCCC----CCCcCCceeee---eEE--EEEE--------------------CC
Confidence 468999999999999999887 2110 11222211000 000 0110 01
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHH----HHHHh---ccCCeeEEEEeCccCCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ----AQAFK---QSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~----~~~f~---~~~~i~~vVltK~D~~~ 254 (494)
..+.+.|.||||..... .+.. .....++.+++|.|.+......+. ...+. ...++ .+|.||+|+..
T Consensus 59 ~~v~l~iwDTaG~e~~~-----~~~~-~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~pi-ilVgNK~DL~~ 131 (232)
T cd04174 59 QRVELSLWDTSGSPYYD-----NVRP-LCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRI-LLIGCKTDLRT 131 (232)
T ss_pred EEEEEEEEeCCCchhhH-----HHHH-HHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCE-EEEEECccccc
Confidence 24678999999964321 1211 223478999999999754332221 12222 22344 89999999854
Q ss_pred CccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
..+...........+|. ...|+.+..-....+-..+|++.|.++++.+++.+...+
T Consensus 132 ~~~~~~~l~~~~~~~Vs-~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 132 DLSTLMELSNQKQAPIS-YEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred ccchhhhhccccCCcCC-HHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 32221111100001111 011222211111112345899999733999988876554
No 337
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.29 E-value=3.9e-06 Score=79.19 Aligned_cols=119 Identities=15% Similarity=0.100 Sum_probs=62.0
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHH----HHh---ccCCeeEEEEeCccCCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQ----AFK---QSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~----~f~---~~~~i~~vVltK~D~~~~ 255 (494)
.+.+-|.||+|..... .+.. .....+|.+++|.|.+......+... .+. ...++ .+|.||.|+...
T Consensus 52 ~~~l~iwDtaG~e~~~-----~~~~-~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~pi-ilVgNK~DL~~~ 124 (182)
T cd04172 52 RIELSLWDTSGSPYYD-----NVRP-LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKM-LLVGCKSDLRTD 124 (182)
T ss_pred EEEEEEEECCCchhhH-----hhhh-hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCE-EEEeEChhhhcC
Confidence 4678899999974322 1211 22346899999999875433222212 222 22344 889999998543
Q ss_pred ccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHH
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~ 309 (494)
.+...........||. ...|+.+..-....+-.-+|++.|.|++.++++.+.+
T Consensus 125 ~~~~~~~~~~~~~~v~-~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 125 LTTLVELSNHRQTPVS-YDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred hhhHHHHHhcCCCCCC-HHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHH
Confidence 2222111111111111 1122322111111233457999998768888887765
No 338
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.28 E-value=4.2e-06 Score=79.53 Aligned_cols=154 Identities=14% Similarity=0.084 Sum_probs=83.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|.+||||||++.++. ..+. ...|.+ ..++.+....-. ...
T Consensus 7 ~KivviG~~~vGKTsll~~~~------~~~~----~~~~~~-----------t~~~~~~~~~i~-------------~~~ 52 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQ------DGST----ESPYGY-----------NMGIDYKTTTIL-------------LDG 52 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHH------cCCC----CCCCCC-----------cceeEEEEEEEE-------------ECC
Confidence 469999999999999999988 2110 011111 111111100000 001
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHh---ccCCeeEEEEeCccCCCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK---QSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~---~~~~i~~vVltK~D~~~~ 255 (494)
..+.+-|.||||..... . +.. .....+|.+++|.|.+......+ ....+. ...++ .+|.||.|....
T Consensus 53 ~~~~l~iwDt~G~~~~~-~----l~~-~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~pi-ilVGNK~DL~~~ 125 (189)
T cd04121 53 RRVKLQLWDTSGQGRFC-T----IFR-SYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPK-ILVGNRLHLAFK 125 (189)
T ss_pred EEEEEEEEeCCCcHHHH-H----HHH-HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEECccchhc
Confidence 23667899999985322 1 211 12347899999999975432211 112222 23444 899999998532
Q ss_pred ccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
...-.+.. +....-.. .+...+|+..|.| ++.+++.+.+.+
T Consensus 126 ~~v~~~~~-------------~~~a~~~~-~~~~e~SAk~g~~-V~~~F~~l~~~i 166 (189)
T cd04121 126 RQVATEQA-------------QAYAERNG-MTFFEVSPLCNFN-ITESFTELARIV 166 (189)
T ss_pred cCCCHHHH-------------HHHHHHcC-CEEEEecCCCCCC-HHHHHHHHHHHH
Confidence 10000000 11111011 2345689999999 999998887654
No 339
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.27 E-value=1.8e-06 Score=86.70 Aligned_cols=100 Identities=19% Similarity=0.103 Sum_probs=53.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhccC
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~~ 183 (494)
|+++|+|||||||+.|+|+ +.++ .++. .+++|+.-..-...... .-.+...+.....+.-.
T Consensus 1 igivG~PN~GKSTLfn~Lt------~~~~-~~~n-----------~pftTi~p~~g~v~v~d-~r~~~l~~~~~~~k~~~ 61 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALT------KAGA-EAAN-----------YPFCTIEPNVGIVPVPD-ERLDKLAEIVKPKKIVP 61 (274)
T ss_pred CeEeCCCCCcHHHHHHHHh------CCCC-cccc-----------ccccchhceeeeEEecc-chhhhHHHHhCCceeee
Confidence 5789999999999999999 8777 4444 23333221110000000 00010000000001112
Q ss_pred CcEEEEeCCCCCchhH---HHHHHHHHHHHhcCCCEEEEEecCC
Q 011076 184 CDLIIVDTSGRHKQEA---ALFEEMRQVSEATNPDLVIFVMDSS 224 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~---~l~~el~~i~~~~~~d~vllVvDa~ 224 (494)
..+.++||||...... .+.... +..+..+|.+++|+|+.
T Consensus 62 ~~i~lvD~pGl~~~a~~~~glg~~f--L~~i~~~D~li~VV~~f 103 (274)
T cd01900 62 ATIEFVDIAGLVKGASKGEGLGNKF--LSHIREVDAIAHVVRCF 103 (274)
T ss_pred eEEEEEECCCcCCCCchhhHHHHHH--HHHHHhCCEEEEEEeCc
Confidence 3689999999864322 222221 22345789999999985
No 340
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.27 E-value=7.3e-06 Score=88.11 Aligned_cols=113 Identities=13% Similarity=0.152 Sum_probs=67.0
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCc-cc--HHHHHHHHh-ccCCeeEEEEeCccCCCCccch
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-QA--AFDQAQAFK-QSVSVGAVIVTKMDGHAKGGGA 259 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g-~~--~~~~~~~f~-~~~~i~~vVltK~D~~~~~g~~ 259 (494)
..+.||||||.. .+...+ +..+..+|.+++|+|+..+ .. ..+.+.... -.++..++|+||+|..... ..
T Consensus 117 ~~i~~IDtPGH~----~fi~~m--~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~-~~ 189 (460)
T PTZ00327 117 RHVSFVDCPGHD----ILMATM--LNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEA-QA 189 (460)
T ss_pred ceEeeeeCCCHH----HHHHHH--HHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHH-HH
Confidence 468999999953 333333 2334568999999999864 22 122222111 1234347899999986421 11
Q ss_pred hHHHHhcCCCeEEecccccccc-ccccCccchhhcccCCCCchHHHHHHHHhCCC
Q 011076 260 LSAVAATKSPVIFIGTGEHMDE-FEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (494)
Q Consensus 260 ls~~~~~g~Pi~fi~~Ge~i~~-l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~ 313 (494)
........ +.+.. .....|..++|+..|.| ++.|++.+.+.++.
T Consensus 190 ~~~~~ei~---------~~l~~~~~~~~~iipVSA~~G~n-I~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 190 QDQYEEIR---------NFVKGTIADNAPIIPISAQLKYN-IDVVLEYICTQIPI 234 (460)
T ss_pred HHHHHHHH---------HHHHhhccCCCeEEEeeCCCCCC-HHHHHHHHHhhCCC
Confidence 11111000 00000 11345778899999999 99999999987763
No 341
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.26 E-value=1.4e-06 Score=82.03 Aligned_cols=115 Identities=14% Similarity=0.126 Sum_probs=57.7
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH----HHHHH---hccCCeeEEEEeCccCCCCc
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAF---KQSVSVGAVIVTKMDGHAKG 256 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~----~~~~f---~~~~~i~~vVltK~D~~~~~ 256 (494)
.++.+.||+|...... +.. .....++.+++|.|.+......+ ....+ ....|+ .+|.||+|.....
T Consensus 49 ~~l~i~Dt~g~~~~~~-----~~~-~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~pi-ilvgnK~Dl~~~~ 121 (187)
T cd04129 49 VQLALWDTAGQEEYER-----LRP-LSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPV-ILVGLKKDLRQDA 121 (187)
T ss_pred EEEEEEECCCChhccc-----cch-hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEeeChhhhhCc
Confidence 4578999999743221 111 12346788888888764322111 11222 223455 8999999974321
Q ss_pred cchhHHHHhcCCCeEEec--cccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 257 GGALSAVAATKSPVIFIG--TGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 257 g~~ls~~~~~g~Pi~fi~--~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
... ... .+-.++. .++.+..-..+.+.+.+|++.|.| ++.+++.+.+.+
T Consensus 122 ~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~-v~~~f~~l~~~~ 172 (187)
T cd04129 122 VAK---EEY--RTQRFVPIQQGKRVAKEIGAKKYMECSALTGEG-VDDVFEAATRAA 172 (187)
T ss_pred ccc---ccc--ccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCC-HHHHHHHHHHHH
Confidence 100 000 0000000 001111001112345689999999 999999987644
No 342
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.26 E-value=4.8e-06 Score=78.84 Aligned_cols=119 Identities=14% Similarity=0.135 Sum_probs=62.3
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHH-----HHHh---ccCCeeEEEEeCccCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQA-----QAFK---QSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~-----~~f~---~~~~i~~vVltK~D~~~ 254 (494)
.+.+-|.||||..... .+.. .....+|.+++|.|.+.... .+.+ ..+. ..+|+ .+|.||.|+..
T Consensus 50 ~~~l~i~Dt~G~e~~~-----~l~~-~~~~~a~~~ilvydit~~~S-f~~~~~~w~~~i~~~~~~~pi-ilvgNK~DL~~ 121 (191)
T cd01875 50 TVSLNLWDTAGQEEYD-----RLRT-LSYPQTNVFIICFSIASPSS-YENVRHKWHPEVCHHCPNVPI-LLVGTKKDLRN 121 (191)
T ss_pred EEEEEEEECCCchhhh-----hhhh-hhccCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhhCCCCCE-EEEEeChhhhc
Confidence 4678899999985322 1211 12346899999999875432 2211 1111 23455 89999999853
Q ss_pred CccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
... ..+.....+........|+.+..-....+...+|++.|.| ++.+++.+.+.+
T Consensus 122 ~~~-~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~-v~e~f~~l~~~~ 176 (191)
T cd01875 122 DAD-TLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDG-VKEVFAEAVRAV 176 (191)
T ss_pred Chh-hHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCC-HHHHHHHHHHHH
Confidence 321 1111111111000000112221101112345589999999 999998887655
No 343
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=98.25 E-value=1.5e-05 Score=78.83 Aligned_cols=79 Identities=14% Similarity=0.267 Sum_probs=48.4
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCC-cccHHHHHHHHhccCC-eeEEEEeCccCCCCccchhH
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSI-GQAAFDQAQAFKQSVS-VGAVIVTKMDGHAKGGGALS 261 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~-g~~~~~~~~~f~~~~~-i~~vVltK~D~~~~~g~~ls 261 (494)
.|++|||||+-..-. . +.....+|.+++|..++. |......+...-+.++ ..++|+||.+.-.. ....
T Consensus 164 ~~~~IIDsaaG~gCp--V------i~sl~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g~s--~ie~ 233 (284)
T COG1149 164 ADLLIIDSAAGTGCP--V------IASLKGADLAILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLGDS--EIEE 233 (284)
T ss_pred cceeEEecCCCCCCh--H------HHhhccCCEEEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCCch--HHHH
Confidence 799999996544332 1 234457899999999873 4333332222222222 24999999953222 4566
Q ss_pred HHHhcCCCeEE
Q 011076 262 AVAATKSPVIF 272 (494)
Q Consensus 262 ~~~~~g~Pi~f 272 (494)
.....|+||..
T Consensus 234 ~~~e~gi~il~ 244 (284)
T COG1149 234 YCEEEGIPILG 244 (284)
T ss_pred HHHHcCCCeeE
Confidence 67777887764
No 344
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.25 E-value=2.8e-05 Score=81.14 Aligned_cols=119 Identities=19% Similarity=0.186 Sum_probs=60.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
+-.|+++|.+|+||||++|+|- |.. .-|..-+ ..- ...+|....+ |.+.
T Consensus 35 ~l~IaV~G~sGsGKSSfINalr------Gl~----~~d~~aA-~tG--v~etT~~~~~-Y~~p----------------- 83 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALR------GLG----HEDEGAA-PTG--VVETTMEPTP-YPHP----------------- 83 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHT------T------TTSTTS---SS--SHSCCTS-EE-EE-S-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHh------CCC----CCCcCcC-CCC--CCcCCCCCee-CCCC-----------------
Confidence 3469999999999999999996 420 0111100 000 0112222222 2211
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhccCCeeEEEEeCccC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDG 252 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~~i~~vVltK~D~ 252 (494)
...++++.|.||.....-.....+... ....-|.+++|.+..........++.+...-....+|-||+|.
T Consensus 84 -~~pnv~lWDlPG~gt~~f~~~~Yl~~~-~~~~yD~fiii~s~rf~~ndv~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 84 -KFPNVTLWDLPGIGTPNFPPEEYLKEV-KFYRYDFFIIISSERFTENDVQLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp -S-TTEEEEEE--GGGSS--HHHHHHHT-TGGG-SEEEEEESSS--HHHHHHHHHHHHTT-EEEEEE--HHH
T ss_pred -CCCCCeEEeCCCCCCCCCCHHHHHHHc-cccccCEEEEEeCCCCchhhHHHHHHHHHcCCcEEEEEecccc
Confidence 145799999999865443333333322 2334677777766655555566677766655556999999996
No 345
>PTZ00258 GTP-binding protein; Provisional
Probab=98.24 E-value=3.2e-06 Score=88.75 Aligned_cols=103 Identities=17% Similarity=0.037 Sum_probs=56.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|+|||||||++|+|. +.++ .++. .+++|+.-..-.... .....+.........+
T Consensus 21 ~~kvgIVG~PNvGKSTLfnaLt------~~~~-~v~n-----------~pftTi~p~~g~v~~-~d~r~~~l~~~~~~~~ 81 (390)
T PTZ00258 21 NLKMGIVGLPNVGKSTTFNALC------KQQV-PAEN-----------FPFCTIDPNTARVNV-PDERFDWLCKHFKPKS 81 (390)
T ss_pred CcEEEEECCCCCChHHHHHHHh------cCcc-cccC-----------CCCCcccceEEEEec-ccchhhHHHHHcCCcc
Confidence 4469999999999999999998 7665 4444 233443211100000 0111111111111111
Q ss_pred ccCCcEEEEeCCCCCchhH---HHHHHHHHHHHhcCCCEEEEEecCC
Q 011076 181 KENCDLIIVDTSGRHKQEA---ALFEEMRQVSEATNPDLVIFVMDSS 224 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~---~l~~el~~i~~~~~~d~vllVvDa~ 224 (494)
.-...+.++||||...... .+... -+..+..+|.+++|+|+.
T Consensus 82 ~~~aqi~lvDtpGLv~ga~~g~gLg~~--fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 82 IVPAQLDITDIAGLVKGASEGEGLGNA--FLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCCCeEEEECCCcCcCCcchhHHHHH--HHHHHHHCCEEEEEEeCC
Confidence 1245789999999864322 22221 123345789999999985
No 346
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.24 E-value=2.7e-06 Score=90.54 Aligned_cols=102 Identities=16% Similarity=0.292 Sum_probs=71.1
Q ss_pred HHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHHHhhcCCC-CCCCC----CC-CCCCeEEEEEc
Q 011076 35 ITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPG-KPSFT----PK-KGKPSVIMFVG 108 (494)
Q Consensus 35 i~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL~~ll~~~-~~~~~----~~-~~~~~vI~lvG 108 (494)
|.+.|+++||.++++..+.++++..+..+. ........+...|.+.+.+.++.. ...+. .. ..+|.+|+++|
T Consensus 185 LaRsLi~aDV~~~~A~~Ia~~Lk~~L~~kg--~~~~~ra~VR~~V~~~L~~~l~~~~a~~y~la~~i~~~k~p~vil~~G 262 (475)
T PRK12337 185 LAQSLMAAGLAPDVARRLARETERDLRRSG--DRVVRRDQLRRKVEALLLEEAGEEVARRYRLLRSIRRPPRPLHVLIGG 262 (475)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhcc--cccccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhccCCCeEEEEEC
Confidence 889999999999999999999988653211 112233556667777776655432 11111 11 23588999999
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc
Q 011076 109 LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (494)
Q Consensus 109 ~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~ 142 (494)
++|+||||++.+||.++ |. ..++++|.+|-
T Consensus 263 ~~G~GKSt~a~~LA~~l---g~-~~ii~tD~iR~ 292 (475)
T PRK12337 263 VSGVGKSVLASALAYRL---GI-TRIVSTDAVRE 292 (475)
T ss_pred CCCCCHHHHHHHHHHHc---CC-cEEeehhHHHH
Confidence 99999999999999654 22 33889998765
No 347
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=98.21 E-value=4.7e-05 Score=75.02 Aligned_cols=41 Identities=32% Similarity=0.459 Sum_probs=36.2
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcch
Q 011076 103 VIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (494)
Q Consensus 103 vI~lv-G~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~ 143 (494)
+++++ |..||||||++..||.+++++|++|.++++|+..+.
T Consensus 4 i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~ 45 (241)
T PRK13886 4 IHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNAT 45 (241)
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCch
Confidence 44454 888999999999999999999999999999998763
No 348
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.21 E-value=1.4e-05 Score=72.00 Aligned_cols=93 Identities=23% Similarity=0.217 Sum_probs=56.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHH---hhhhccCcceeccCCCCChH-HHHHHHHHH
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK---QNATKAKIPFYGSYTESDPV-RIAVEGVET 178 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk---~~~~~~~i~~~~~~~~~dp~-~i~~~~l~~ 178 (494)
+++++|+||+||||++..++..+..+|.+|..++.+.........+. ......+..++......... .....+...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL 80 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHH
Confidence 37899999999999999999999989999999999865443332221 11112223333322222211 111122233
Q ss_pred HhccCCcEEEEeCCCCC
Q 011076 179 FKKENCDLIIVDTSGRH 195 (494)
Q Consensus 179 ~~~~~~dvIIIDTaG~~ 195 (494)
....++++++||.+...
T Consensus 81 ~~~~~~~~lviDe~~~~ 97 (165)
T cd01120 81 RERGGDDLIILDELTRL 97 (165)
T ss_pred HhCCCCEEEEEEcHHHH
Confidence 34557788888887643
No 349
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.21 E-value=3.3e-06 Score=87.83 Aligned_cols=100 Identities=18% Similarity=0.078 Sum_probs=54.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCc-ceeccCCCCChHHHHHHHHHHHhc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKI-PFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i-~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
.|+++|+|||||||+.|+|+ +.+ +.++. .+++|+.-. -+...... -.+...+....-+.
T Consensus 4 ~vgIVG~PNvGKSTLfnaLt------~~~-~~v~n-----------ypftTi~p~~G~~~v~d~--r~~~l~~~~~p~~~ 63 (364)
T PRK09601 4 KCGIVGLPNVGKSTLFNALT------KAG-AEAAN-----------YPFCTIEPNVGVVPVPDP--RLDKLAEIVKPKKI 63 (364)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCC-Ceecc-----------cccccccceEEEEEeccc--cchhhHHhcCCccc
Confidence 58999999999999999999 777 35554 234443211 11110110 00000000000001
Q ss_pred cCCcEEEEeCCCCCchhH---HHHHHHHHHHHhcCCCEEEEEecCC
Q 011076 182 ENCDLIIVDTSGRHKQEA---ALFEEMRQVSEATNPDLVIFVMDSS 224 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~---~l~~el~~i~~~~~~d~vllVvDa~ 224 (494)
-...+.++||||...... .+... -+.....+|.+++|+|+.
T Consensus 64 ~~a~i~lvD~pGL~~~a~~g~glg~~--fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 64 VPATIEFVDIAGLVKGASKGEGLGNQ--FLANIREVDAIVHVVRCF 107 (364)
T ss_pred cCceEEEEECCCCCCCCChHHHHHHH--HHHHHHhCCEEEEEEeCC
Confidence 124689999999865322 22211 223345789999999985
No 350
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.21 E-value=4.1e-06 Score=84.88 Aligned_cols=102 Identities=17% Similarity=0.309 Sum_probs=74.5
Q ss_pred HHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHHHhhcCCCCCC-CC-----CCCCCCeEEEEEc
Q 011076 35 ITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPS-FT-----PKKGKPSVIMFVG 108 (494)
Q Consensus 35 i~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL~~ll~~~~~~-~~-----~~~~~~~vI~lvG 108 (494)
+.+.|..+++...++-++..++.+.+..+. ...-..+.+.+.|++.|.+........ +. .....|.+|++.|
T Consensus 22 L~rsL~~~g~~~~~A~~iA~~i~~~L~~~g--~~~i~~~el~~~V~~~L~~~~~~~~~~~y~~~~~i~~~~~p~iIlI~G 99 (301)
T PRK04220 22 LARSLTAAGMKPSIAYEIASEIEEELKKEG--IKEITKEELRRRVYYKLIEKDYEEVAEKYLLWRRIRKSKEPIIILIGG 99 (301)
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHcC--CEEeeHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 568899999999999988888888765442 223345667788888888776543211 11 1124578899999
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc
Q 011076 109 LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (494)
Q Consensus 109 ~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~ 142 (494)
++||||||++.+||.+| |.. .+|++|++|-
T Consensus 100 ~sgsGKStlA~~La~~l---~~~-~vi~~D~~re 129 (301)
T PRK04220 100 ASGVGTSTIAFELASRL---GIR-SVIGTDSIRE 129 (301)
T ss_pred CCCCCHHHHHHHHHHHh---CCC-EEEechHHHH
Confidence 99999999999999887 444 5889999873
No 351
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.19 E-value=3.8e-06 Score=73.76 Aligned_cols=141 Identities=21% Similarity=0.228 Sum_probs=80.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
+.|+++|+.|+||||++++|- |..+.- | ++ .-|+|
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~------G~~~ly------k-------KT----QAve~---------------------- 36 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLY------GNDTLY------K-------KT----QAVEF---------------------- 36 (148)
T ss_pred ceeEEecccccCchhHHHHhh------cchhhh------c-------cc----ceeec----------------------
Confidence 359999999999999999998 542210 0 00 01211
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH--HHHHHhccCCeeEEEEeCccCCCCccch
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD--QAQAFKQSVSVGAVIVTKMDGHAKGGGA 259 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~--~~~~f~~~~~i~~vVltK~D~~~~~g~~ 259 (494)
.|--.|||||-.-....+...+. ....++|.+++|-.+..+..... ....|.+ + .+-|+||.|.... +-
T Consensus 37 --~d~~~IDTPGEy~~~~~~Y~aL~--tt~~dadvi~~v~~and~~s~f~p~f~~~~~k--~-vIgvVTK~DLaed--~d 107 (148)
T COG4917 37 --NDKGDIDTPGEYFEHPRWYHALI--TTLQDADVIIYVHAANDPESRFPPGFLDIGVK--K-VIGVVTKADLAED--AD 107 (148)
T ss_pred --cCccccCCchhhhhhhHHHHHHH--HHhhccceeeeeecccCccccCCccccccccc--c-eEEEEecccccch--Hh
Confidence 12246899997655545544442 22346788888887765432211 1222222 2 4789999999753 22
Q ss_pred hHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 260 LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 260 ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
++... +++-+.. ..|.+.+|+....| ++.|++.+...
T Consensus 108 I~~~~------------~~L~eaG-a~~IF~~s~~d~~g-v~~l~~~L~~~ 144 (148)
T COG4917 108 ISLVK------------RWLREAG-AEPIFETSAVDNQG-VEELVDYLASL 144 (148)
T ss_pred HHHHH------------HHHHHcC-CcceEEEeccCccc-HHHHHHHHHhh
Confidence 33222 1111111 34555667777778 88887776543
No 352
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.18 E-value=8.9e-06 Score=92.35 Aligned_cols=65 Identities=17% Similarity=0.174 Sum_probs=43.4
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc--HHHHHHHH-hccCCeeEEEEeCccCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAF-KQSVSVGAVIVTKMDGH 253 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~--~~~~~~~f-~~~~~i~~vVltK~D~~ 253 (494)
.++++.|+||||........ ......+|.+++|+|+..|.. .....+.. ....++ .+++||+|..
T Consensus 84 ~~~~i~liDTPG~~~f~~~~------~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~-ivviNKiD~~ 151 (720)
T TIGR00490 84 NEYLINLIDTPGHVDFGGDV------TRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKP-VLFINKVDRL 151 (720)
T ss_pred CceEEEEEeCCCccccHHHH------HHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCE-EEEEEChhcc
Confidence 47899999999997643222 122346799999999987632 22333322 334565 7999999975
No 353
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.18 E-value=9.1e-06 Score=77.85 Aligned_cols=113 Identities=21% Similarity=0.318 Sum_probs=69.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|++||||||++++|....-..++...++..++... + .. ..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~--------------~--~~-~~----------------- 51 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKT--------------I--EP-YR----------------- 51 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEE--------------E--Ee-CC-----------------
Confidence 46999999999999999999966655555555554432110 0 00 00
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHH----HHHhc----cCCeeEEEEeCccCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQA----QAFKQ----SVSVGAVIVTKMDGH 253 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~----~~f~~----~~~i~~vVltK~D~~ 253 (494)
..+++.++||+|...... +.. .....++.+++|.|.+......+.. ..+.. ..++ .+|.||+|..
T Consensus 52 ~~~~~~~~Dt~gq~~~~~-~~~-----~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~i-ilv~nK~Dl~ 124 (219)
T COG1100 52 RNIKLQLWDTAGQEEYRS-LRP-----EYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPI-LLVGNKIDLF 124 (219)
T ss_pred CEEEEEeecCCCHHHHHH-HHH-----HHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceE-EEEecccccc
Confidence 035678999999864331 111 2235788999999987533222221 12222 2344 8899999986
Q ss_pred CC
Q 011076 254 AK 255 (494)
Q Consensus 254 ~~ 255 (494)
..
T Consensus 125 ~~ 126 (219)
T COG1100 125 DE 126 (219)
T ss_pred cc
Confidence 55
No 354
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=98.16 E-value=1.8e-05 Score=78.91 Aligned_cols=146 Identities=19% Similarity=0.225 Sum_probs=85.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHH-----------HHhhhh-ccCcceeccCCCCChH
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQ-----------LKQNAT-KAKIPFYGSYTESDPV 169 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~q-----------Lk~~~~-~~~i~~~~~~~~~dp~ 169 (494)
.+-.+.|.-||||||+++.++ ..++|+|++++-....-..+++. .+.|-. +.|+- .+.-..+.+
T Consensus 58 PvtIITGyLGaGKtTLLn~Il--~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGCl--CCtVk~~gv 133 (391)
T KOG2743|consen 58 PVTIITGYLGAGKTTLLNYIL--TGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCL--CCTVKDNGV 133 (391)
T ss_pred ceEEEEecccCChHHHHHHHH--ccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeE--EEEecchHH
Confidence 467889999999999999987 34679999999875544333331 111111 12331 112223344
Q ss_pred HHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHH----hcCCCEEEEEecCCCcccHHH-------HHHHHhc
Q 011076 170 RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSE----ATNPDLVIFVMDSSIGQAAFD-------QAQAFKQ 238 (494)
Q Consensus 170 ~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~----~~~~d~vllVvDa~~g~~~~~-------~~~~f~~ 238 (494)
....+.++ +...||+|++.|.|...+. .+. .+-.+.+ -+.-|-++-|+||-.....++ .-+++.+
T Consensus 134 raie~lvq--kkGkfD~IllETTGlAnPa-Pia-~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~Q 209 (391)
T KOG2743|consen 134 RAIENLVQ--KKGKFDHILLETTGLANPA-PIA-SMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQ 209 (391)
T ss_pred HHHHHHHh--cCCCcceEEEeccCCCCcH-HHH-HHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHH
Confidence 44444444 5678999999999997543 121 2222222 334577899999864321111 1122222
Q ss_pred cCCeeEEEEeCccCCCC
Q 011076 239 SVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 239 ~~~i~~vVltK~D~~~~ 255 (494)
-.-.+.+|+||.|....
T Consensus 210 iA~AD~II~NKtDli~~ 226 (391)
T KOG2743|consen 210 IALADRIIMNKTDLVSE 226 (391)
T ss_pred HhhhheeeeccccccCH
Confidence 22236889999999866
No 355
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.16 E-value=3.4e-05 Score=83.18 Aligned_cols=189 Identities=15% Similarity=0.047 Sum_probs=95.4
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCC-CCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhcc
Q 011076 77 QAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKA 155 (494)
Q Consensus 77 ~~v~~eL~~ll~~~~~~~~~~~~~~~vI~lvG~~-GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~ 155 (494)
+.+++.|...++-.........++++.++++|.. ||||||++..|+.+|+++ |....+.+ -..+ +.+...+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~---v~~fK~Gp---D~id-~~p~~~~~ 286 (476)
T PRK06278 214 KILKEKLKSRSGISTNNKKEERNKPKGIILLATGSESGKTFLTTSIAGKLRGK---VFVAKIGP---DVRD-IVPSLYLL 286 (476)
T ss_pred HHHHHHHHHHhcccccccchhhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHhC---eEEEcCCC---Chhh-cCCcceec
Confidence 3455555555554332223333446678899885 999999999999999975 44443311 0011 00100000
Q ss_pred Ccceecc---CCCCChHHHHHHHHHHHhccCCcEEEEeCCCCCchh--HHHH-HHHHHHHHhcCCCEEEEEecCCCcc--
Q 011076 156 KIPFYGS---YTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQE--AALF-EEMRQVSEATNPDLVIFVMDSSIGQ-- 227 (494)
Q Consensus 156 ~i~~~~~---~~~~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~--~~l~-~el~~i~~~~~~d~vllVvDa~~g~-- 227 (494)
..+..+. ..+.++.-...+.+..+...++|++||+-+|-.... .... .....+....+ --+++|+|+..+.
T Consensus 287 ~~~~sp~~a~n~~~d~~~~~~~~~~~~~~~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l~-~PVILV~~~~~g~i~ 365 (476)
T PRK06278 287 REKMTKYNSIKIGDRGWSDVEEFLEFVKNSDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKALG-FPVYIVSSCSKSGIE 365 (476)
T ss_pred ccccCChHHHhhcCCcccCHHHHHHHHHhcCCCEEEEECCCCcccccCCCCccccHHHHHHHhC-CCEEEEEcCCCChHH
Confidence 0011000 001122111223344443347899999998653211 0000 00112333333 3578899987653
Q ss_pred cHHHHH---HHH--hccCCeeEEEEeCccCCCCccchhHHHHhcCCCeEEe
Q 011076 228 AAFDQA---QAF--KQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFI 273 (494)
Q Consensus 228 ~~~~~~---~~f--~~~~~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi 273 (494)
.+...+ ..| ...+++.++|+|++...........+...+|+||.=+
T Consensus 366 ~~~~~i~G~~~~l~~~~i~i~GVIlN~v~~~~~~~~~~~~le~~gvpVLG~ 416 (476)
T PRK06278 366 GAFVESMAYYSLLKKMGVKVEGIILNKVYNMEIFEKVKKIAENSNINLIGV 416 (476)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEECCCcHHHHHHHHHHHHhcCCCEEEe
Confidence 233332 233 2346788999999985332233344555578887633
No 356
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.15 E-value=2.9e-05 Score=74.67 Aligned_cols=105 Identities=10% Similarity=0.018 Sum_probs=56.4
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHH---HHhccCCeeEEEEeCccCCCCc
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQ---AFKQSVSVGAVIVTKMDGHAKG 256 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~---~f~~~~~i~~vVltK~D~~~~~ 256 (494)
.+.+.+.||+|..... .+. .......+.+++|.|.+....... ... ...+.+++ .+|.||+|...+.
T Consensus 57 ~i~i~~~Dt~g~~~~~-----~~~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i-~lv~nK~Dl~~~~ 129 (215)
T PTZ00132 57 PICFNVWDTAGQEKFG-----GLR-DGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPI-VLVGNKVDVKDRQ 129 (215)
T ss_pred EEEEEEEECCCchhhh-----hhh-HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEECccCcccc
Confidence 4677899999964321 111 122336788999999875432211 111 12233454 6789999975331
Q ss_pred cchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 257 g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
-. ..... ..... ......+|+..|.| ++..+..+.+.+
T Consensus 130 ~~-~~~~~--------------~~~~~-~~~~~e~Sa~~~~~-v~~~f~~ia~~l 167 (215)
T PTZ00132 130 VK-ARQIT--------------FHRKK-NLQYYDISAKSNYN-FEKPFLWLARRL 167 (215)
T ss_pred CC-HHHHH--------------HHHHc-CCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 10 01100 00000 11224578888988 888777776655
No 357
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.15 E-value=1.9e-05 Score=73.72 Aligned_cols=120 Identities=20% Similarity=0.201 Sum_probs=71.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc----CcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT----FRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGV 176 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~----~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l 176 (494)
...|+++|+.|+||||++.+++ -+....++.|. ++. +..++ ...+ |+....
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s------~k~~v~t~~~~~~~s~k~------kr~tT-va~D-~g~~~~----------- 64 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALS------DKPLVITEADASSVSGKG------KRPTT-VAMD-FGSIEL----------- 64 (187)
T ss_pred ceeEEEEcccccchhhHHHHhh------ccccceeecccccccccc------cccee-Eeec-ccceEE-----------
Confidence 4569999999999999999999 55554454432 111 11111 1111 111110
Q ss_pred HHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH--HHHHHHHhccC-CeeEEEEeCccCC
Q 011076 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSV-SVGAVIVTKMDGH 253 (494)
Q Consensus 177 ~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~--~~~~~~f~~~~-~i~~vVltK~D~~ 253 (494)
.+++-+-++||||....+ .|..+. ...+.-.++++|++.+++. ...+..|.... .+..|.+||.|+.
T Consensus 65 ----~~~~~v~LfgtPGq~RF~-----fm~~~l-~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~ 134 (187)
T COG2229 65 ----DEDTGVHLFGTPGQERFK-----FMWEIL-SRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLF 134 (187)
T ss_pred ----cCcceEEEecCCCcHHHH-----HHHHHH-hCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccC
Confidence 124678899999987543 121111 2247888999999987764 33344443322 2348889999985
Q ss_pred CC
Q 011076 254 AK 255 (494)
Q Consensus 254 ~~ 255 (494)
..
T Consensus 135 ~a 136 (187)
T COG2229 135 DA 136 (187)
T ss_pred CC
Confidence 44
No 358
>PRK04296 thymidine kinase; Provisional
Probab=98.15 E-value=2.7e-05 Score=74.06 Aligned_cols=87 Identities=21% Similarity=0.235 Sum_probs=56.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc--ccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA--DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~--D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
.+++++|++|+||||++..++..+..+|++|.++.. |+ |.+ .....++.++++... ....+.++.. .+..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~-~~~----~~~i~~~lg~~~~~~-~~~~~~~~~~-~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDD-RYG----EGKVVSRIGLSREAI-PVSSDTDIFE-LIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccc-ccc----CCcEecCCCCcccce-EeCChHHHHH-HHHh-
Confidence 468899999999999999999999989999999954 54 222 122345555543221 0111222221 1222
Q ss_pred hccCCcEEEEeCCCCCc
Q 011076 180 KKENCDLIIVDTSGRHK 196 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~ 196 (494)
....+|+|+||.+++.+
T Consensus 75 ~~~~~dvviIDEaq~l~ 91 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLD 91 (190)
T ss_pred hCCCCCEEEEEccccCC
Confidence 34579999999998864
No 359
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.12 E-value=2.3e-05 Score=89.17 Aligned_cols=140 Identities=16% Similarity=0.154 Sum_probs=73.9
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceE--EEEcccCcchhHHHHHhhhhccC-
Q 011076 80 FNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPA--LVCADTFRAGAFDQLKQNATKAK- 156 (494)
Q Consensus 80 ~~eL~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVa--iVs~D~~r~~a~~qLk~~~~~~~- 156 (494)
.+.+.+++... .+-+.|+++|..++|||||+.+|......-..++. -...|.. + .++-+..+-...
T Consensus 7 ~~~~~~~~~~~--------~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~-~--~E~~rgiTi~~~~ 75 (731)
T PRK07560 7 VEKILELMKNP--------EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFD-E--EEQARGITIKAAN 75 (731)
T ss_pred HHHHHHHhhch--------hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCcc-H--HHHHhhhhhhccc
Confidence 45566666532 12356999999999999999999854321100100 0001111 0 111111110111
Q ss_pred cceeccCCCCChHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH--HHHHH
Q 011076 157 IPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQ 234 (494)
Q Consensus 157 i~~~~~~~~~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~--~~~~~ 234 (494)
+.++... ...++.+.||||||.+.... +.. ......|.+++|+|+..|... .....
T Consensus 76 ~~~~~~~----------------~~~~~~i~liDtPG~~df~~----~~~--~~l~~~D~avlVvda~~g~~~~t~~~~~ 133 (731)
T PRK07560 76 VSMVHEY----------------EGKEYLINLIDTPGHVDFGG----DVT--RAMRAVDGAIVVVDAVEGVMPQTETVLR 133 (731)
T ss_pred eEEEEEe----------------cCCcEEEEEEcCCCccChHH----HHH--HHHHhcCEEEEEEECCCCCCccHHHHHH
Confidence 1111000 01357789999999986432 221 122356999999999876332 22333
Q ss_pred H-HhccCCeeEEEEeCccCC
Q 011076 235 A-FKQSVSVGAVIVTKMDGH 253 (494)
Q Consensus 235 ~-f~~~~~i~~vVltK~D~~ 253 (494)
. .....++ .+++||+|..
T Consensus 134 ~~~~~~~~~-iv~iNK~D~~ 152 (731)
T PRK07560 134 QALRERVKP-VLFINKVDRL 152 (731)
T ss_pred HHHHcCCCe-EEEEECchhh
Confidence 2 2334565 8999999975
No 360
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=98.11 E-value=0.0001 Score=71.45 Aligned_cols=145 Identities=15% Similarity=0.201 Sum_probs=76.4
Q ss_pred EEEEcC-CCCcHHHHHHHHHHHHHhcCCceEEEEc---ccC---cchhHHHHHhhhhccC----c-ceeccCC-------
Q 011076 104 IMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCA---DTF---RAGAFDQLKQNATKAK----I-PFYGSYT------- 164 (494)
Q Consensus 104 I~lvG~-~GvGKTTl~~kLA~~l~~~g~kVaiVs~---D~~---r~~a~~qLk~~~~~~~----i-~~~~~~~------- 164 (494)
++++|. +|+|||+++..|+.+|+++|++|...-+ ... +......+........ + ++.....
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~KPv~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~ 81 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYKPVQSGCEETDRNGDALALQRLSGLPLDYEDVNPYRFEEPLSPHLAA 81 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEeeEecCCCCCCCcHHHHHHHHHcCCCCChhhcCceeeCCCCCHHHHH
Confidence 556666 4999999999999999999998876542 211 1222333333221110 0 1111000
Q ss_pred -----CCChHHHHHHHHHHHhccCCcEEEEeCCCCCchh--HHHHHHHHHHHHhcCCCEEEEEecCCCccc--HHHHHHH
Q 011076 165 -----ESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQE--AALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQA 235 (494)
Q Consensus 165 -----~~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~--~~l~~el~~i~~~~~~d~vllVvDa~~g~~--~~~~~~~ 235 (494)
..++ +...+.++.+. .+||+||||+||..... ..+ ....+.... ...+++|.++..+.- .....+.
T Consensus 82 ~~~~~~~~~-~~i~~~~~~l~-~~~D~viIEg~gg~~~~~~~~~--~~adl~~~l-~~pvilV~~~~~~~i~~~~~~i~~ 156 (222)
T PRK00090 82 ALEGVAIDL-EKISAALRRLA-QQYDLVLVEGAGGLLVPLTEDL--TLADLAKQL-QLPVILVVGVKLGCINHTLLTLEA 156 (222)
T ss_pred HHhCCCCCH-HHHHHHHHHHH-hhCCEEEEECCCceeccCCCCC--cHHHHHHHh-CCCEEEEECCCCcHHHHHHHHHHH
Confidence 0111 22334444433 57999999999864211 110 011122222 245778888765521 1122222
Q ss_pred Hhc-cCCeeEEEEeCccCC
Q 011076 236 FKQ-SVSVGAVIVTKMDGH 253 (494)
Q Consensus 236 f~~-~~~i~~vVltK~D~~ 253 (494)
+.. .+++.++|+|+++..
T Consensus 157 l~~~~~~i~gvIlN~~~~~ 175 (222)
T PRK00090 157 IRARGLPLAGWVANGIPPE 175 (222)
T ss_pred HHHCCCCeEEEEEccCCCc
Confidence 322 456779999999865
No 361
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.10 E-value=4.2e-06 Score=78.45 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=27.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
+..++++|.|||||||++|.|. |.+++-++.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~------~~~~~~~~~ 147 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLK------RSRACNVGA 147 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHh------CcccceecC
Confidence 4579999999999999999999 888877766
No 362
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=98.10 E-value=5e-05 Score=73.55 Aligned_cols=164 Identities=20% Similarity=0.223 Sum_probs=91.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcch------------hHHHHHhhhh--c---c--------C
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG------------AFDQLKQNAT--K---A--------K 156 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~------------a~~qLk~~~~--~---~--------~ 156 (494)
+.|++.|..|-|||||..++++.|++.|+||++|-|||-.-. -.+.|+.... . . +
T Consensus 2 r~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~Gf~G 81 (278)
T COG1348 2 RQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTGFGG 81 (278)
T ss_pred ceEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchHHHHhCCcccchHHHHHHhcCccccCCHHHheeccCCc
Confidence 359999999999999999999999999999999999984432 2344444331 0 0 1
Q ss_pred cceeccCCCCCh--------HHHHHHHHHHHh--ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCc
Q 011076 157 IPFYGSYTESDP--------VRIAVEGVETFK--KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG 226 (494)
Q Consensus 157 i~~~~~~~~~dp--------~~i~~~~l~~~~--~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g 226 (494)
+.+..+. ...| +-.+.+-++.+. .+..||||.|..|-.-..-.-+. .+--.+|++++|.+...-
T Consensus 82 v~CVEsG-GPepGvGCAGRGVitai~~Le~lgaf~~~~DvviyDVLGDVVCGGFAmP-----iReg~AdeiyIVtSge~M 155 (278)
T COG1348 82 VKCVESG-GPEPGVGCAGRGVITAINLLEELGAFEEDLDVVIYDVLGDVVCGGFAMP-----IREGYADEIYIVTSGEMM 155 (278)
T ss_pred eEEeecC-CCCCCCCcccchHHHHHHHHHHhCCccccCCEEEEeccCceeecceeee-----hhcccCcEEEEEecCchH
Confidence 1111100 0111 222333344431 13469999999985321100000 011247888888876421
Q ss_pred --ccHHHHHHH---Hhcc--CCeeEEEEeCccCCCCccchhHHHHhcCCCeE
Q 011076 227 --QAAFDQAQA---FKQS--VSVGAVIVTKMDGHAKGGGALSAVAATKSPVI 271 (494)
Q Consensus 227 --~~~~~~~~~---f~~~--~~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~ 271 (494)
..+-+.++. |.+. +.+.++|.|---.+.....+..++...+.|++
T Consensus 156 alYAANNI~kgi~k~a~~~~~rLgGiIcNsr~~~~e~e~v~~fa~~igt~li 207 (278)
T COG1348 156 ALYAANNIAKGIRKYAKTGGVRLGGIICNSRSVDRERELVEAFAERLGTQLI 207 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCCcceeeEEecCCCcccHHHHHHHHHHHhCCceE
Confidence 223334443 3332 34789999864433333333445556676654
No 363
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.09 E-value=0.00012 Score=78.84 Aligned_cols=159 Identities=13% Similarity=0.101 Sum_probs=86.3
Q ss_pred EEEEEcC-CCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccC-CCCChHHHHHHHHHHHh
Q 011076 103 VIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSY-TESDPVRIAVEGVETFK 180 (494)
Q Consensus 103 vI~lvG~-~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~-~~~dp~~i~~~~l~~~~ 180 (494)
.++|+|. +||||||++..|+.+|+++|++|....+++....+. .+... .+.+..... ...+ .+.+.+.+..+
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~~d~~-~~~~~---~g~~~~~ld~~~~~-~~~v~~~~~~~- 78 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYIDPA-YHTAA---TGRPSRNLDSWMMG-EELVRALFARA- 78 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCcccHH-HHHHH---hCCCcccCCceeCC-HHHHHHHHHHh-
Confidence 4778876 599999999999999999999999988865322111 11111 122211100 0011 12334444443
Q ss_pred ccCCcEEEEeCCCCCch------hHHHHHHHHHHHHhcCCCEEEEEecCCCcc-cHHHHH---HHHhccCCeeEEEEeCc
Q 011076 181 KENCDLIIVDTSGRHKQ------EAALFEEMRQVSEATNPDLVIFVMDSSIGQ-AAFDQA---QAFKQSVSVGAVIVTKM 250 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~------~~~l~~el~~i~~~~~~d~vllVvDa~~g~-~~~~~~---~~f~~~~~i~~vVltK~ 250 (494)
..++|++||+-+|-... +..... .+..... -.+++|+|+.... ...... ..+...+++.++|+||+
T Consensus 79 ~~~~D~vlVEGagGl~~g~~~~~~~~s~a---diA~~l~-~pviLV~~~~~~~~~~a~l~~~~~~~~~~i~i~GvI~N~v 154 (451)
T PRK01077 79 AQGADIAVIEGVMGLFDGAGSDPDEGSTA---DIAKLLG-APVVLVVDASGMAQSAAALVLGFATFDPDVRIAGVILNRV 154 (451)
T ss_pred cccCCEEEEECCCccccCCccCCCCCCHH---HHHHHhC-CCEEEEECCchHHHHHHHHHHHHHHhCCCCCEEEEEEECC
Confidence 24799999998753311 111111 2333333 3477888876422 111222 33444567889999999
Q ss_pred cCCCCccchhHHHHhcCCCeE
Q 011076 251 DGHAKGGGALSAVAATKSPVI 271 (494)
Q Consensus 251 D~~~~~g~~ls~~~~~g~Pi~ 271 (494)
............+..+++|+.
T Consensus 155 ~~~~~~~~l~~~l~~~gipvL 175 (451)
T PRK01077 155 GSERHYQLLREALERCGIPVL 175 (451)
T ss_pred CChhHHHHHHHHHHhcCCCEE
Confidence 643222122334444677764
No 364
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.08 E-value=5.1e-06 Score=71.70 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 011076 103 VIMFVGLQGSGKTTTCTKYA 122 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA 122 (494)
.|+++|.+||||||+++.|+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~ 20 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLC 20 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHh
Confidence 38899999999999999999
No 365
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=4.9e-05 Score=85.30 Aligned_cols=218 Identities=17% Similarity=0.114 Sum_probs=110.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
+.+.|.++++-.+|||||+-.|..|-..-.+ .. +.+.. .+..|. ...-...|+.+....+ .+
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k-~G--~v~~g-~~~~D~-~e~EqeRGITI~saa~-------------s~ 70 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISK-IG--EVHDG-AATMDW-MEQEQERGITITSAAT-------------TL 70 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCC-Cc--cccCC-CccCCC-cHHHHhcCCEEeeeee-------------EE
Confidence 3467999999999999999999866443211 11 11000 000111 1111122333222111 11
Q ss_pred hcc-CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH--HHHHH-HhccCCeeEEEEeCccCCCC
Q 011076 180 KKE-NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQA-FKQSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 180 ~~~-~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~--~~~~~-f~~~~~i~~vVltK~D~~~~ 255 (494)
... ++.+-||||||......+....|+ -.|..++|+|+..|-... ...+. ....+|. .+++||+|....
T Consensus 71 ~~~~~~~iNlIDTPGHVDFt~EV~rslr------vlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~-i~fiNKmDR~~a 143 (697)
T COG0480 71 FWKGDYRINLIDTPGHVDFTIEVERSLR------VLDGAVVVVDAVEGVEPQTETVWRQADKYGVPR-ILFVNKMDRLGA 143 (697)
T ss_pred EEcCceEEEEeCCCCccccHHHHHHHHH------hhcceEEEEECCCCeeecHHHHHHHHhhcCCCe-EEEEECcccccc
Confidence 123 388999999999876555444432 358889999998775432 22222 2233555 999999997543
Q ss_pred c-cchh-HHHHhcCCCeEEec----cccccc---cccccCccchh-hcccCCCCc--------hHHHHHHHHhCCCCCch
Q 011076 256 G-GGAL-SAVAATKSPVIFIG----TGEHMD---EFEVFDVKPFV-SRLLGMGDW--------SGFMDKIHEVVPMDQQP 317 (494)
Q Consensus 256 ~-g~~l-s~~~~~g~Pi~fi~----~Ge~i~---~l~~f~p~~~v-s~~~G~Gdi--------~~L~e~i~~~~~~~~~~ 317 (494)
. .... .+...++.++..+. .++.+. ++..-....|- +......++ .++...+.+.+-+- ..
T Consensus 144 ~~~~~~~~l~~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~-de 222 (697)
T COG0480 144 DFYLVVEQLKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEF-DE 222 (697)
T ss_pred ChhhhHHHHHHHhCCCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhc-CH
Confidence 2 1122 22233444433322 322221 11111111111 112111111 22333333333221 26
Q ss_pred HHHhhhhcc-hhhHHHHHHHHHHHhcc
Q 011076 318 ELLQKLSEG-NFTLRIMYEQFQNILKM 343 (494)
Q Consensus 318 ~~~~~~~~~-~f~~~d~~~ql~~~~~~ 343 (494)
++.++.+.| +++.+.++..|+.-..-
T Consensus 223 ~l~e~yl~g~e~~~~~i~~~i~~~~~~ 249 (697)
T COG0480 223 ELMEKYLEGEEPTEEEIKKALRKGTIA 249 (697)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHhhhc
Confidence 688999988 79999999999874433
No 366
>PTZ00416 elongation factor 2; Provisional
Probab=98.06 E-value=7.5e-06 Score=94.32 Aligned_cols=64 Identities=14% Similarity=0.170 Sum_probs=42.1
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH--HHHHHHHh-ccCCeeEEEEeCccCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFK-QSVSVGAVIVTKMDGH 253 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~--~~~~~~f~-~~~~i~~vVltK~D~~ 253 (494)
++.+.|+||||.+.. ..+. ......+|.+++|+|+..|... ....+... ...++ .+++||+|..
T Consensus 91 ~~~i~liDtPG~~~f----~~~~--~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~-iv~iNK~D~~ 157 (836)
T PTZ00416 91 PFLINLIDSPGHVDF----SSEV--TAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRP-VLFINKVDRA 157 (836)
T ss_pred ceEEEEEcCCCHHhH----HHHH--HHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCE-EEEEEChhhh
Confidence 566899999999753 2332 2233468999999999877432 22333322 23444 8999999986
No 367
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.05 E-value=2.5e-05 Score=74.80 Aligned_cols=43 Identities=23% Similarity=0.360 Sum_probs=37.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcch
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~ 143 (494)
..++.++|+||+||||++..++....+.|.+|+.++++-+.+.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~ 54 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPE 54 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHH
Confidence 4689999999999999999999999888999999999754443
No 368
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.05 E-value=8.7e-05 Score=72.59 Aligned_cols=39 Identities=28% Similarity=0.537 Sum_probs=35.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~ 139 (494)
..+++++|+||+||||++..++....++|.+|..++.+-
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 457899999999999999999988777899999999963
No 369
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.05 E-value=2.1e-05 Score=75.48 Aligned_cols=105 Identities=10% Similarity=0.050 Sum_probs=60.0
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHH---HHHHh---ccCCeeEEEEeCccCCCCc
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ---AQAFK---QSVSVGAVIVTKMDGHAKG 256 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~---~~~f~---~~~~i~~vVltK~D~~~~~ 256 (494)
.+.+-|.||||..... .+.. .....++.+++|.|.+........ ...+. ..+++ .+|.||+|...+.
T Consensus 43 ~~~l~iwDt~G~e~~~-----~l~~-~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~pi-ilvgNK~Dl~~~~ 115 (200)
T smart00176 43 PIRFNVWDTAGQEKFG-----GLRD-GYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPI-VLCGNKVDVKDRK 115 (200)
T ss_pred EEEEEEEECCCchhhh-----hhhH-HHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCE-EEEEECccccccc
Confidence 4678899999985321 1111 123467899999999865432211 11122 23455 8999999975331
Q ss_pred cchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 257 g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
-. ..... ..... -.+...+|++.|.| +..+++.+.+.+
T Consensus 116 v~-~~~~~--------------~~~~~-~~~~~e~SAk~~~~-v~~~F~~l~~~i 153 (200)
T smart00176 116 VK-AKSIT--------------FHRKK-NLQYYDISAKSNYN-FEKPFLWLARKL 153 (200)
T ss_pred CC-HHHHH--------------HHHHc-CCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 00 00000 00001 11235589999999 999999886654
No 370
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=0.00015 Score=77.60 Aligned_cols=160 Identities=20% Similarity=0.209 Sum_probs=93.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHH
Q 011076 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (494)
Q Consensus 98 ~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~ 177 (494)
..+|.+|-+.|.--=||||++-+|- +.+|+-..+ | ..|+ .|-.|...-.
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lR------ks~VAA~E~-----G-------GITQ-hIGAF~V~~p------------ 198 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALR------KSSVAAGEA-----G-------GITQ-HIGAFTVTLP------------ 198 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHh------hCceehhhc-----C-------Cccc-eeceEEEecC------------
Confidence 4567899999999999999998886 555543332 0 1111 1111111110
Q ss_pred HHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc--HHHHHHHHhc-cCCeeEEEEeCccCCC
Q 011076 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 178 ~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~--~~~~~~~f~~-~~~i~~vVltK~D~~~ 254 (494)
.+-.+.|.||||..... .|+. .-+.-.|.+++|+.+..|-. ..+.++.-+. .+|+ .+.+||+|...
T Consensus 199 ----~G~~iTFLDTPGHaAF~-----aMRa-RGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~Vpi-VvAinKiDkp~ 267 (683)
T KOG1145|consen 199 ----SGKSITFLDTPGHAAFS-----AMRA-RGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPI-VVAINKIDKPG 267 (683)
T ss_pred ----CCCEEEEecCCcHHHHH-----HHHh-ccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCE-EEEEeccCCCC
Confidence 25678999999986432 3431 22445789999998876632 2222232222 3565 89999999542
Q ss_pred C-ccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHH
Q 011076 255 K-GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (494)
Q Consensus 255 ~-~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~ 309 (494)
. ...+..-+...|+++ +++.---+..++|++.|.| ++.|.|.+.-
T Consensus 268 a~pekv~~eL~~~gi~~---------E~~GGdVQvipiSAl~g~n-l~~L~eaill 313 (683)
T KOG1145|consen 268 ANPEKVKRELLSQGIVV---------EDLGGDVQVIPISALTGEN-LDLLEEAILL 313 (683)
T ss_pred CCHHHHHHHHHHcCccH---------HHcCCceeEEEeecccCCC-hHHHHHHHHH
Confidence 2 111222222334333 3333333457799999999 8888887644
No 371
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.00 E-value=5.2e-05 Score=73.61 Aligned_cols=47 Identities=28% Similarity=0.401 Sum_probs=39.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQ 147 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~q 147 (494)
..++.++|+||+||||++..++....+.|++|..++++.+.+.-+.+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~ 69 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQ 69 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHH
Confidence 45899999999999999999999998889999999998444433333
No 372
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.00 E-value=2e-05 Score=90.91 Aligned_cols=64 Identities=19% Similarity=0.220 Sum_probs=41.4
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH--HHHHH-HHhccCCeeEEEEeCccCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQ-AFKQSVSVGAVIVTKMDGH 253 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~--~~~~~-~f~~~~~i~~vVltK~D~~ 253 (494)
++-+-||||||.... ..++ ......+|.+++|+|+..|-.. ....+ .....+++ .+++||+|..
T Consensus 97 ~~~inliDtPGh~dF----~~e~--~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~-i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDF----SSEV--TAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHH----HHHH--HHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCE-EEEEECCccc
Confidence 456679999998643 2332 2223457999999999977432 22222 22333555 8999999986
No 373
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.99 E-value=3.5e-05 Score=71.81 Aligned_cols=43 Identities=28% Similarity=0.464 Sum_probs=38.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~ 142 (494)
++.+|+|+|++||||||++..|+..+...|.++.+++.|..|.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~ 45 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRT 45 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHH
Confidence 4568999999999999999999999988899999999997754
No 374
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.98 E-value=7.1e-05 Score=69.93 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=34.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~ 140 (494)
+++.|+||+||||++..++....+.|.+|..++.+..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~ 38 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES 38 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 7889999999999999999999999999999998653
No 375
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.98 E-value=2.9e-05 Score=70.40 Aligned_cols=152 Identities=19% Similarity=0.160 Sum_probs=80.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|.+||||||+++.+... .. .+.+.+ ..+.+++...... ...
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~----~~------~~~~~~-----------t~~~~~~~~~~~~-------------~~~ 46 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLING----EF------PENYIP-----------TIGIDSYSKEVSI-------------DGK 46 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS----ST------TSSSET-----------TSSEEEEEEEEEE-------------TTE
T ss_pred CEEEECCCCCCHHHHHHHHHhh----cc------cccccc-----------ccccccccccccc-------------ccc
Confidence 3899999999999999998721 11 011111 0111111100000 013
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHHh---ccCCeeEEEEeCccCCCCc
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFK---QSVSVGAVIVTKMDGHAKG 256 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~---~~~~i~~vVltK~D~~~~~ 256 (494)
.+.+-|.||+|...... + . -.....+|.+++|.|.+...... .....+. ....+..+|.||.|.....
T Consensus 47 ~~~l~i~D~~g~~~~~~-~----~-~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~ 120 (162)
T PF00071_consen 47 PVNLEIWDTSGQERFDS-L----R-DIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDER 120 (162)
T ss_dssp EEEEEEEEETTSGGGHH-H----H-HHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGS
T ss_pred ccccccccccccccccc-c----c-cccccccccccccccccccccccccccccccccccccccccceeeeccccccccc
Confidence 56788999999754331 1 1 12234678999999986532211 1222222 2113448888999976521
Q ss_pred cchhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 257 GGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 257 g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
..-.... +.+ .++. .+..-+|+..+.| +..++..+.+.
T Consensus 121 ~v~~~~~-------------~~~~~~~~--~~~~e~Sa~~~~~-v~~~f~~~i~~ 159 (162)
T PF00071_consen 121 EVSVEEA-------------QEFAKELG--VPYFEVSAKNGEN-VKEIFQELIRK 159 (162)
T ss_dssp SSCHHHH-------------HHHHHHTT--SEEEEEBTTTTTT-HHHHHHHHHHH
T ss_pred cchhhHH-------------HHHHHHhC--CEEEEEECCCCCC-HHHHHHHHHHH
Confidence 1100000 111 1122 3445578888888 88877776553
No 376
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.97 E-value=2.6e-05 Score=73.21 Aligned_cols=118 Identities=16% Similarity=0.143 Sum_probs=60.8
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH----HHHHHh---ccCCeeEEEEeCccCCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFK---QSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~----~~~~f~---~~~~i~~vVltK~D~~~~ 255 (494)
.+.+-|.||+|...... +.. .....++.+++|.|.+......+ ....+. ...++ .+|-||+|....
T Consensus 48 ~v~l~i~Dt~G~~~~~~-----~~~-~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~pi-ilvgnK~Dl~~~ 120 (176)
T cd04133 48 TVNLGLWDTAGQEDYNR-----LRP-LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPI-VLVGTKLDLRDD 120 (176)
T ss_pred EEEEEEEECCCCccccc-----cch-hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEeChhhccC
Confidence 46778999999753221 111 12346899999999875432211 122222 23444 899999998543
Q ss_pred ccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.... .......+|. ...++.+..-....+..-+|+..|.| ++.+++.+.+.+
T Consensus 121 ~~~~--~~~~~~~~v~-~~~~~~~a~~~~~~~~~E~SAk~~~n-V~~~F~~~~~~~ 172 (176)
T cd04133 121 KQYL--ADHPGASPIT-TAQGEELRKQIGAAAYIECSSKTQQN-VKAVFDAAIKVV 172 (176)
T ss_pred hhhh--hhccCCCCCC-HHHHHHHHHHcCCCEEEECCCCcccC-HHHHHHHHHHHH
Confidence 2100 0000000000 00111111101111234589999999 999999887654
No 377
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.96 E-value=0.00012 Score=71.90 Aligned_cols=48 Identities=21% Similarity=0.346 Sum_probs=40.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHH
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK 149 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk 149 (494)
.+++++|++|+||||++.+++..+.++|+++..++.+.......+++.
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~ 72 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMM 72 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHH
Confidence 479999999999999999999888888999999998776555555543
No 378
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.96 E-value=4.9e-05 Score=74.22 Aligned_cols=99 Identities=17% Similarity=0.184 Sum_probs=58.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCC--ceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGW--KPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~--kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~ 177 (494)
+-.+|+++|++++||||++|.|. |. ...+.+. ...+|+ ||-........
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~------~~~~~f~~~~~-----------~~~~T~-gi~~~~~~~~~----------- 56 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLF------GTLSGFDVMDT-----------SQQTTK-GIWMWSVPFKL----------- 56 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh------CCCCCeEecCC-----------CCCCcc-ceEEEeccccC-----------
Confidence 34689999999999999999999 66 3333332 223333 33222111100
Q ss_pred HHhccCCcEEEEeCCCCCchhHHH-HHH--HHHHHHhcCCCEEEEEecCCCcccHHH
Q 011076 178 TFKKENCDLIIVDTSGRHKQEAAL-FEE--MRQVSEATNPDLVIFVMDSSIGQAAFD 231 (494)
Q Consensus 178 ~~~~~~~dvIIIDTaG~~~~~~~l-~~e--l~~i~~~~~~d~vllVvDa~~g~~~~~ 231 (494)
..+..++++||+|....+... ... +..+. ..-++.+++.++...-..+.+
T Consensus 57 ---~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~-~llss~~i~n~~~~~~~~~~~ 109 (224)
T cd01851 57 ---GKEHAVLLLDTEGTDGRERGEFEDDARLFALA-TLLSSVLIYNSWETILGDDLA 109 (224)
T ss_pred ---CCcceEEEEecCCcCccccCchhhhhHHHHHH-HHHhCEEEEeccCcccHHHHH
Confidence 125689999999997654322 111 22222 223788888888875444443
No 379
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.95 E-value=0.00011 Score=73.31 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=41.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKI 157 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i 157 (494)
..+++++|+||+||||++..++...+++|.+|+.++.+.-..-..+++...+...+.
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~ 92 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGV 92 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCC
Confidence 457899999999999999999998888899999999973111112345444444443
No 380
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=2e-05 Score=81.90 Aligned_cols=136 Identities=18% Similarity=0.279 Sum_probs=72.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcc-eeccC-CCCChHHH-----HHH
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIP-FYGSY-TESDPVRI-----AVE 174 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~-~~~~~-~~~dp~~i-----~~~ 174 (494)
-.++|+|...+||||++..|.+.+.. |+ +...+.++..+...+-. |+-.. ......+. ..-
T Consensus 8 ~nl~~iGHVD~GKSTl~GrLly~~G~-------id-----~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~ 75 (428)
T COG5256 8 LNLVFIGHVDAGKSTLVGRLLYDLGE-------ID-----KRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDV 75 (428)
T ss_pred eEEEEEcCCCCCchhhhhhhHHHhCC-------CC-----HHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEE
Confidence 45899999999999999999854321 11 12233333333322222 00000 00000000 000
Q ss_pred HHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc----------cHHHHHHHHhccCCeeE
Q 011076 175 GVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ----------AAFDQAQAFKQSVSVGA 244 (494)
Q Consensus 175 ~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~----------~~~~~~~~f~~~~~i~~ 244 (494)
+...|..+.|.+-|+||||.. +...+| +.-+..+|..+||+||..+. .-.....+.--.+.-.+
T Consensus 76 ~~~~fet~k~~~tIiDaPGHr----dFvknm--ItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lI 149 (428)
T COG5256 76 AHSKFETDKYNFTIIDAPGHR----DFVKNM--ITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLI 149 (428)
T ss_pred EEEEeecCCceEEEeeCCchH----HHHHHh--hcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEE
Confidence 112334457889999999943 233343 44456789999999998662 21111111111133348
Q ss_pred EEEeCccCCCC
Q 011076 245 VIVTKMDGHAK 255 (494)
Q Consensus 245 vVltK~D~~~~ 255 (494)
|.+||+|...-
T Consensus 150 VavNKMD~v~w 160 (428)
T COG5256 150 VAVNKMDLVSW 160 (428)
T ss_pred EEEEccccccc
Confidence 88999999763
No 381
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.95 E-value=3.2e-05 Score=76.46 Aligned_cols=39 Identities=28% Similarity=0.405 Sum_probs=35.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~ 142 (494)
|+|+|+|||||||++..|+.++...|++|.+++.|..|.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~ 40 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRE 40 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHH
Confidence 889999999999999999999998899999999887653
No 382
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.94 E-value=1.2e-05 Score=71.71 Aligned_cols=35 Identities=29% Similarity=0.472 Sum_probs=28.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~ 142 (494)
+|+++|+|||||||++..|+..+. ..+|+.|.++.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~~~~ 35 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVISQDEIRR 35 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-----EEEEEHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHHHHH
Confidence 589999999999999999985433 67888877543
No 383
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.94 E-value=1.3e-05 Score=75.72 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAY 123 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~ 123 (494)
..++|+|.|||||||++|.|..
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~ 149 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLK 149 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHH
Confidence 3599999999999999999993
No 384
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=97.93 E-value=0.00013 Score=65.41 Aligned_cols=102 Identities=20% Similarity=0.261 Sum_probs=63.9
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhccCC
Q 011076 105 MFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENC 184 (494)
Q Consensus 105 ~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~~~ 184 (494)
.++| +|+||||++..|+.+|.++|.+|....+.. .+
T Consensus 4 ~~~~-~~~Gkt~~~~~l~~~l~~~~~~v~~~kp~~-------------------------------------------~~ 39 (134)
T cd03109 4 FGTG-TDIGKTVATAILARALKEKGYRVAPLKPVQ-------------------------------------------TY 39 (134)
T ss_pred EeCC-CCcCHHHHHHHHHHHHHHCCCeEEEEecCC-------------------------------------------CC
Confidence 3446 779999999999999999999998776621 16
Q ss_pred cEEEEeCCCCCchh--HHHHHHHHHHHHhcCCCEEEEEecCCCcc--cHHHHHHHHh-ccCCeeEEEEeCccCC
Q 011076 185 DLIIVDTSGRHKQE--AALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFK-QSVSVGAVIVTKMDGH 253 (494)
Q Consensus 185 dvIIIDTaG~~~~~--~~l~~el~~i~~~~~~d~vllVvDa~~g~--~~~~~~~~f~-~~~~i~~vVltK~D~~ 253 (494)
|+++|+.+|..... ... ....+....+. .+++|.++..+. ++....+..+ ..+.+.++|.|.++..
T Consensus 40 d~vliEGaGg~~~p~~~~~--~~~d~~~~~~~-~vllV~~~~~g~i~~a~~~~~~l~~~g~~i~gvi~N~~~~~ 110 (134)
T cd03109 40 DFVLVEGAGGLCVPLKEDF--TNADVAKELNL-PAILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIVEK 110 (134)
T ss_pred CEEEEECCCccccCCCCCC--CHHHHHHHhCC-CEEEEEcCCCCcHhHHHHHHHHHHhcCCceeEEEEccCCCc
Confidence 89999999763310 000 01122222232 367888776552 1222223222 2356789999988864
No 385
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.92 E-value=4.5e-05 Score=66.94 Aligned_cols=102 Identities=16% Similarity=0.203 Sum_probs=55.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhc-----CCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK-----GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEG 175 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~-----g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~ 175 (494)
.+.++++|++|+||||++..++..+... ..++..+++...+ ...+-........+.+... ......+....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~---~~~~~~l~~~~ 79 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR-TPRDFAQEILEALGLPLKS---RQTSDELRSLL 79 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS-SHHHHHHHHHHHHT-SSSS---TS-HHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC-CHHHHHHHHHHHhCccccc---cCCHHHHHHHH
Confidence 4579999999999999999999988754 5566666665444 1111122333333332211 22334444444
Q ss_pred HHHHhccCCcEEEEeCCCCCchhHHHHHHHHH
Q 011076 176 VETFKKENCDLIIVDTSGRHKQEAALFEEMRQ 207 (494)
Q Consensus 176 l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~ 207 (494)
.+.+......+++||-+-... .......+..
T Consensus 80 ~~~l~~~~~~~lviDe~~~l~-~~~~l~~l~~ 110 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEADHLF-SDEFLEFLRS 110 (131)
T ss_dssp HHHHHHCTEEEEEEETTHHHH-THHHHHHHHH
T ss_pred HHHHHhcCCeEEEEeChHhcC-CHHHHHHHHH
Confidence 444444444678888776642 3444444433
No 386
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.92 E-value=9.1e-05 Score=71.44 Aligned_cols=39 Identities=26% Similarity=0.292 Sum_probs=35.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~ 139 (494)
..++.+.|+||+||||++..+|..+..+|.+|+.++.|.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~ 57 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 457899999999999999999999988899999999874
No 387
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.92 E-value=6.1e-05 Score=71.92 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=34.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~ 139 (494)
-+++.||.||||||.|+.+-.|...-|+++-+|..||
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDP 41 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDP 41 (273)
T ss_pred eEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCH
Confidence 3678899999999999999999999999999999997
No 388
>PRK06762 hypothetical protein; Provisional
Probab=97.91 E-value=9.7e-05 Score=68.09 Aligned_cols=39 Identities=33% Similarity=0.430 Sum_probs=32.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~ 142 (494)
|.+|+++|++||||||++..|+.++ +..+.+++.|.+|.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l---~~~~~~i~~D~~r~ 40 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL---GRGTLLVSQDVVRR 40 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEecHHHHHH
Confidence 5689999999999999999999777 44678888877653
No 389
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.90 E-value=2e-05 Score=71.05 Aligned_cols=29 Identities=31% Similarity=0.368 Sum_probs=24.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
.++++|.+||||||++|.|. +.+..-++.
T Consensus 85 ~~~~~G~~~vGKstlin~l~------~~~~~~~~~ 113 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALV------GKKKVSVSA 113 (141)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCCceeeCC
Confidence 79999999999999999998 666554444
No 390
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.89 E-value=1.8e-05 Score=72.49 Aligned_cols=31 Identities=13% Similarity=0.108 Sum_probs=24.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
...++++|.|||||||++|.|. +.+..-++.
T Consensus 100 ~~~~~~~G~~~~GKstlin~l~------~~~~~~~~~ 130 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINALL------NKLKLKVGN 130 (155)
T ss_pred CcEEEEEccCCCCHHHHHHHHH------ccccccccC
Confidence 4569999999999999999999 655444443
No 391
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.88 E-value=6e-05 Score=68.81 Aligned_cols=40 Identities=30% Similarity=0.389 Sum_probs=36.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~ 142 (494)
+|+++|+|||||||++..|+.++...|.++..++.|.+|.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 4889999999999999999999998898998899888765
No 392
>PRK06526 transposase; Provisional
Probab=97.88 E-value=2e-05 Score=78.48 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=51.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..++|+|+||+|||+++..++..+.++|++|..++... -.+++.... ..... ...+..+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~----l~~~l~~~~-----------~~~~~----~~~l~~l-- 157 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQ----WVARLAAAH-----------HAGRL----QAELVKL-- 157 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHH----HHHHHHHHH-----------hcCcH----HHHHHHh--
Confidence 35899999999999999999999999999998766521 123332110 00011 1112222
Q ss_pred cCCcEEEEeCCCCCchhHH
Q 011076 182 ENCDLIIVDTSGRHKQEAA 200 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~ 200 (494)
..+|++|||..|..+.+..
T Consensus 158 ~~~dlLIIDD~g~~~~~~~ 176 (254)
T PRK06526 158 GRYPLLIVDEVGYIPFEPE 176 (254)
T ss_pred ccCCEEEEcccccCCCCHH
Confidence 3689999999998765433
No 393
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=97.88 E-value=4.8e-05 Score=69.89 Aligned_cols=101 Identities=12% Similarity=0.111 Sum_probs=54.7
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HH---HHHHh--ccCCeeEEEEeCccCCCC
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQ---AQAFK--QSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~---~~~f~--~~~~i~~vVltK~D~~~~ 255 (494)
+.+-|-||+|.... . ....+|.+++|.|.+...... .. +.... ..+|+ .+|.||.|....
T Consensus 47 ~~l~i~D~~g~~~~--~---------~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~pi-ilvgnK~Dl~~~ 114 (158)
T cd04103 47 HLLLIRDEGGAPDA--Q---------FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPL-ILVGTQDAISES 114 (158)
T ss_pred EEEEEEECCCCCch--h---------HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEeeHHHhhhc
Confidence 45678999998531 1 113578999999987532211 11 11221 12344 899999997421
Q ss_pred ccchhHHHHhcCCCeEEeccccccc-cccccCccchhhcccCCCCchHHHHHHHH
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHMD-EFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i~-~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~ 309 (494)
.....+.. .++.+. ... ..+...+|++.|.| ++++++.+.+
T Consensus 115 ~~~~v~~~-----------~~~~~~~~~~-~~~~~e~SAk~~~~-i~~~f~~~~~ 156 (158)
T cd04103 115 NPRVIDDA-----------RARQLCADMK-RCSYYETCATYGLN-VERVFQEAAQ 156 (158)
T ss_pred CCcccCHH-----------HHHHHHHHhC-CCcEEEEecCCCCC-HHHHHHHHHh
Confidence 11111100 001111 111 12334579999999 9999888764
No 394
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.86 E-value=0.00018 Score=67.10 Aligned_cols=42 Identities=31% Similarity=0.268 Sum_probs=36.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCc
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r 141 (494)
++.+|+|+|++||||||++..|+.+|...+..+.+++.|.+|
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r 47 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELR 47 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHH
Confidence 456899999999999999999999998888888888876643
No 395
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.85 E-value=1.8e-05 Score=80.12 Aligned_cols=31 Identities=29% Similarity=0.339 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
+..++++|.|||||||++|+|. |.+++-++.
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~------~~~~~~~~~ 151 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLA------GKKIAKTGN 151 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHh------cCCccccCC
Confidence 4579999999999999999999 877776665
No 396
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.85 E-value=0.00024 Score=70.76 Aligned_cols=117 Identities=16% Similarity=0.152 Sum_probs=65.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhc-CCceEEEEcccCcchhHHHHHhhhhccCcceeccCC-CCChHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYT-ESDPVRIAVEGVET 178 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~-g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~-~~dp~~i~~~~l~~ 178 (494)
..++++.|+||+||||++..++..++.. |++|+.++.+.-..-....+... ..++++..... ..........++..
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQ--YAGKRLHLPDTVFIYTLEEFDAAFDE 107 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHHHH--HhCCCcccCCccccccHHHHHHHHHH
Confidence 3478999999999999999999998876 99999999965221112222111 12333221110 11111222333444
Q ss_pred HhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecC
Q 011076 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDS 223 (494)
Q Consensus 179 ~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa 223 (494)
+.. ...+.++|+++.... +.+...+........+ -++|+|.
T Consensus 108 ~~~-~~~l~i~d~~~~~~~-~~i~~~i~~~~~~~~~--~~vvID~ 148 (271)
T cd01122 108 FEG-TGRLFMYDSFGEYSM-DSVLEKVRYMAVSHGI--QHIIIDN 148 (271)
T ss_pred hcC-CCcEEEEcCCCccCH-HHHHHHHHHHHhcCCc--eEEEECC
Confidence 432 234677888775433 3444444433333333 4788887
No 397
>PRK04328 hypothetical protein; Provisional
Probab=97.85 E-value=0.00047 Score=68.41 Aligned_cols=39 Identities=18% Similarity=0.341 Sum_probs=34.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~ 139 (494)
..++++.|+||+||||++..++....++|.++..|+.+-
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 457999999999999999999988777899999999865
No 398
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.84 E-value=2.4e-05 Score=78.72 Aligned_cols=31 Identities=39% Similarity=0.466 Sum_probs=26.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
+..++++|.|||||||++|.|. +.+++-++.
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~------~~~~~~~~~ 148 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLA------GKKVAKVGN 148 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHh------CCCccccCC
Confidence 4579999999999999999998 777666655
No 399
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=97.83 E-value=0.00036 Score=66.47 Aligned_cols=161 Identities=19% Similarity=0.256 Sum_probs=86.6
Q ss_pred EEEEEcC-CCCcHHHHHHHHHHHHHhcCCceEEEEc---ccCcchhHHHHHhhhhccC----cceeccCCCCChHHHH--
Q 011076 103 VIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCA---DTFRAGAFDQLKQNATKAK----IPFYGSYTESDPVRIA-- 172 (494)
Q Consensus 103 vI~lvG~-~GvGKTTl~~kLA~~l~~~g~kVaiVs~---D~~r~~a~~qLk~~~~~~~----i~~~~~~~~~dp~~i~-- 172 (494)
.|.++|. +|||||+++..|+.+|.++|.+|...-+ ........+.+........ +..+.......|.-.+
T Consensus 2 ~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~KPi~~~~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (199)
T PF13500_consen 2 TIFITGTDTGVGKTVVSLGLARALRRRGIKVGYFKPIQTGPEDDEDAELIRELFGLSEPPDDPSPYTFDEPASPHLAAEL 81 (199)
T ss_dssp EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEEEEEEEESCCCSSHHHHHHHHCCTCCCHHHHECEEESSSS-HHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEEEeeeEecCCCCchHHHHHHHhCCCcccccccccccCcccCHHHHhhc
Confidence 4778887 6999999999999999999999986443 2222233343433322211 1111111111221111
Q ss_pred ------HHHH--HHHhccCCcEEEEeCCCCCch---hHHHHHHHHHHHHhcCCCEEEEEecCCCcc--cHHHHHHHHhc-
Q 011076 173 ------VEGV--ETFKKENCDLIIVDTSGRHKQ---EAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQ- 238 (494)
Q Consensus 173 ------~~~l--~~~~~~~~dvIIIDTaG~~~~---~~~l~~el~~i~~~~~~d~vllVvDa~~g~--~~~~~~~~f~~- 238 (494)
.+.+ +.+ ...+|++||+.+|.... ...+.. .+....++ .+++|+++..+. +.....+.+..
T Consensus 82 ~~~~~~~~~i~~~~l-~~~~D~vlVEGag~~~~~~~~~~~n~---dia~~L~a-~vIlV~~~~~g~i~~~l~~~~~~~~~ 156 (199)
T PF13500_consen 82 EGVDIDLERIIYKEL-AEEYDVVLVEGAGGLMVPIFSGDLNA---DIAKALGA-PVILVASGRLGTINHTLLTIEALKQR 156 (199)
T ss_dssp HT----HHHHHHHHC-HTTTCEEEEEESSSTTSECCTTEEHH---HHHHHHT--EEEEEEESSTTHHHHHHHHHHHHHCT
T ss_pred cCCcccHHHHHHHHH-hhcCCEEEEeCCcccCcccccChHHH---HHHHHcCC-CEEEEeCCCCCCHHHHHHHHHHHHhc
Confidence 1112 222 34899999999987432 111211 23333343 578899887653 12223344433
Q ss_pred cCCeeEEEEeCccCCCCccchhHHHHhcCCCeE
Q 011076 239 SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVI 271 (494)
Q Consensus 239 ~~~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~ 271 (494)
.+++.++|+|+++... ..-.+...+++|+.
T Consensus 157 g~~v~GvI~N~~~~~~---~~~~l~~~~~i~vl 186 (199)
T PF13500_consen 157 GIRVLGVILNRVPEPE---NLEALREKSGIPVL 186 (199)
T ss_dssp TS-EEEEEEEECTCCH---HHHHHHHHHCCEEC
T ss_pred CCCEEEEEEECCCCHH---HHHHHHHhCCCCEE
Confidence 3678899999976542 23334445565554
No 400
>PHA02542 41 41 helicase; Provisional
Probab=97.82 E-value=0.0012 Score=71.45 Aligned_cols=41 Identities=10% Similarity=0.122 Sum_probs=36.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~ 142 (494)
..+++.|+||+||||++..+|..+++.|++|++++.+.-..
T Consensus 191 ~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ 231 (473)
T PHA02542 191 TLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEE 231 (473)
T ss_pred cEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHH
Confidence 46888999999999999999999888899999999987544
No 401
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.82 E-value=0.00025 Score=74.45 Aligned_cols=98 Identities=28% Similarity=0.331 Sum_probs=62.6
Q ss_pred HHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCccee
Q 011076 81 NELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160 (494)
Q Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~ 160 (494)
.+|-++|+.. +. +..++++.|+||+||||++..++..+.+.|.+|+.++.+. ..+|++..+.+.++...
T Consensus 69 ~eLD~vLgGG---i~----~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE----s~~qi~~Ra~rlg~~~~ 137 (372)
T cd01121 69 EELDRVLGGG---LV----PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE----SPEQIKLRADRLGISTE 137 (372)
T ss_pred HHHHHhhcCC---cc----CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc----CHHHHHHHHHHcCCCcc
Confidence 4566666542 21 1357899999999999999999999998889999998753 23566655555554321
Q ss_pred c--cCCCCChHHHHHHHHHHHhccCCcEEEEeCCC
Q 011076 161 G--SYTESDPVRIAVEGVETFKKENCDLIIVDTSG 193 (494)
Q Consensus 161 ~--~~~~~dp~~i~~~~l~~~~~~~~dvIIIDTaG 193 (494)
. ...+.+...+ +..+...++++|+||.--
T Consensus 138 ~l~l~~e~~le~I----~~~i~~~~~~lVVIDSIq 168 (372)
T cd01121 138 NLYLLAETNLEDI----LASIEELKPDLVIIDSIQ 168 (372)
T ss_pred cEEEEccCcHHHH----HHHHHhcCCcEEEEcchH
Confidence 1 0112222222 223344578889999843
No 402
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=97.82 E-value=0.00027 Score=76.54 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=28.3
Q ss_pred EEEEcCC-CCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 104 IMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 104 I~lvG~~-GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
|+|+|.. +||||+++..|+++|+++|++|+-.-+
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~fKp 35 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILARRGYRVAPFKS 35 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 3566764 899999999999999999998875544
No 403
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=0.00013 Score=78.27 Aligned_cols=161 Identities=20% Similarity=0.217 Sum_probs=89.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHH
Q 011076 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (494)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~ 178 (494)
.+|.+|.+.|.---|||||+-++= +-+|+ ..+. |.+ +...+- |.......
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR------~t~Va--~~Ea---GGI------TQhIGA--~~v~~~~~----------- 52 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIR------KTNVA--AGEA---GGI------TQHIGA--YQVPLDVI----------- 52 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHh------cCccc--cccC---Cce------eeEeee--EEEEeccC-----------
Confidence 356799999999999999998886 43333 2211 111 111111 11111000
Q ss_pred HhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH--HHHHHHHhc-cCCeeEEEEeCccCCCC
Q 011076 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQ-SVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 179 ~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~--~~~~~~f~~-~~~i~~vVltK~D~~~~ 255 (494)
...-+.|+||||..... .|+. .-+.-.|.++||+|+..|-.. .+.....+. ..|+ .+.+||+|....
T Consensus 53 ---~~~~itFiDTPGHeAFt-----~mRa-RGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~-iVAiNKiDk~~~ 122 (509)
T COG0532 53 ---KIPGITFIDTPGHEAFT-----AMRA-RGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPI-VVAINKIDKPEA 122 (509)
T ss_pred ---CCceEEEEcCCcHHHHH-----HHHh-cCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCE-EEEEecccCCCC
Confidence 13467899999986432 2221 112337899999999877432 222222222 2455 999999998643
Q ss_pred cc-chhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHH
Q 011076 256 GG-GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (494)
Q Consensus 256 ~g-~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~ 309 (494)
.. ....-....|+. .+.+..-....++|++.|.| +.+|++.+.-
T Consensus 123 np~~v~~el~~~gl~---------~E~~gg~v~~VpvSA~tg~G-i~eLL~~ill 167 (509)
T COG0532 123 NPDKVKQELQEYGLV---------PEEWGGDVIFVPVSAKTGEG-IDELLELILL 167 (509)
T ss_pred CHHHHHHHHHHcCCC---------HhhcCCceEEEEeeccCCCC-HHHHHHHHHH
Confidence 21 111122222211 11111123446789999999 9999988744
No 404
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.80 E-value=0.00092 Score=65.34 Aligned_cols=144 Identities=15% Similarity=0.164 Sum_probs=77.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhc-CCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCC-Ch--HHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTES-DP--VRIAVEGV 176 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~-g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~-dp--~~i~~~~l 176 (494)
..++++.|+||+||||++..++..+... |++|+.++.+.-......++. +...+++........ .. ......+.
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLL--ASESGISLSKLRTGSLSDEDWERLAEAI 90 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHH--HHhcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 3579999999999999999999998887 999999999763332233221 122233322111111 11 11112222
Q ss_pred HHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCC----cc---cH-------HHHHHHHhccCCe
Q 011076 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSI----GQ---AA-------FDQAQAFKQSVSV 242 (494)
Q Consensus 177 ~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~----g~---~~-------~~~~~~f~~~~~i 242 (494)
... ....+.+.|.++.. -+.+...+........+ -++|+|... +. +. ...++.|....++
T Consensus 91 ~~~--~~~~~~i~~~~~~~--~~~l~~~i~~~~~~~~~--~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~~~ 164 (242)
T cd00984 91 GEL--KELPIYIDDSSSLT--VSDIRSRARRLKKEHGL--GLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNV 164 (242)
T ss_pred HHH--hcCCEEEeCCCCCC--HHHHHHHHHHHHHhcCC--CEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 222 24556666765543 23455555444333334 367777642 11 11 1223344445566
Q ss_pred eEEEEeCccC
Q 011076 243 GAVIVTKMDG 252 (494)
Q Consensus 243 ~~vVltK~D~ 252 (494)
.+++++.+..
T Consensus 165 ~ii~~~q~~r 174 (242)
T cd00984 165 PVIALSQLSR 174 (242)
T ss_pred eEEEecccCh
Confidence 6777776653
No 405
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.80 E-value=1.4e-05 Score=73.96 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 011076 102 SVIMFVGLQGSGKTTTCTKYA 122 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA 122 (494)
++++|+|++||||||++|.|.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~ 56 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALL 56 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999999
No 406
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.80 E-value=0.00013 Score=73.22 Aligned_cols=106 Identities=21% Similarity=0.296 Sum_probs=55.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|.|||||||++..|..++...+++|.+|+.|..+. .+. . +.....+.......+.+++.....
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~----------~~~-~-y~~~~~Ek~~R~~l~s~v~r~ls~ 70 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGI----------DRN-D-YADSKKEKEARGSLKSAVERALSK 70 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-----------TTS-S-S--GGGHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccccccc----------chh-h-hhchhhhHHHHHHHHHHHHHhhcc
Confidence 5899999999999999999999999999999999854320 111 1 111111111222234444444433
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS 224 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~ 224 (494)
-++||+|-.=+.. .+--|+-.+.+.......++-+++.
T Consensus 71 -~~iVI~Dd~nYiK---g~RYelyclAr~~~~~~c~i~~~~~ 108 (270)
T PF08433_consen 71 -DTIVILDDNNYIK---GMRYELYCLARAYGTTFCVIYCDCP 108 (270)
T ss_dssp --SEEEE-S---SH---HHHHHHHHHHHHTT-EEEEEEEE--
T ss_pred -CeEEEEeCCchHH---HHHHHHHHHHHHcCCCEEEEEECCC
Confidence 3899999877653 3334555556666655555555553
No 407
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.79 E-value=3.7e-05 Score=69.66 Aligned_cols=37 Identities=32% Similarity=0.467 Sum_probs=31.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceE-EEEccc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPA-LVCADT 139 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVa-iVs~D~ 139 (494)
+|+++|+.||||||++..|+.+|.++|++|+ +.+.|.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 7999999999999999999999999999999 666655
No 408
>PRK06696 uridine kinase; Validated
Probab=97.79 E-value=6.9e-05 Score=72.91 Aligned_cols=44 Identities=27% Similarity=0.340 Sum_probs=39.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcch
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~ 143 (494)
.+.+|++.|++||||||++.+|+..|...|..|.+++.|-|...
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~ 64 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP 64 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence 47799999999999999999999999888989999998876543
No 409
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.79 E-value=2.9e-05 Score=79.97 Aligned_cols=31 Identities=26% Similarity=0.244 Sum_probs=28.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
+..++++|-|||||||++|.|+ |++++.++.
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~------~k~~~~~s~ 162 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLL------GKKVAKTSN 162 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHh------cccceeeCC
Confidence 3569999999999999999999 999988888
No 410
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.79 E-value=9.5e-05 Score=70.63 Aligned_cols=92 Identities=23% Similarity=0.340 Sum_probs=51.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchh--HHHHHhhhhccCcceeccCCCCChHHHHHHH
Q 011076 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA--FDQLKQNATKAKIPFYGSYTESDPVRIAVEG 175 (494)
Q Consensus 98 ~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a--~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~ 175 (494)
...|..+++.|+|||||||++..+...+. +....+|+.|.+|..- ++.+........ ...+......++...
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~----~~~~~~~a~~~~~~~ 85 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQFHPDYDELLKADPDEA----SELTQKEASRLAEKL 85 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGGGSTTHHHHHHHHCCCT----HHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHHhccchhhhhhhhhhhh----HHHHHHHHHHHHHHH
Confidence 35688999999999999999999986655 6678899999988543 333322111110 011112223456666
Q ss_pred HHHHhccCCcEEEEeCCCCCc
Q 011076 176 VETFKKENCDLIIVDTSGRHK 196 (494)
Q Consensus 176 l~~~~~~~~dvIIIDTaG~~~ 196 (494)
++.+...++++|+ ||.....
T Consensus 86 ~~~a~~~~~nii~-E~tl~~~ 105 (199)
T PF06414_consen 86 IEYAIENRYNIIF-EGTLSNP 105 (199)
T ss_dssp HHHHHHCT--EEE-E--TTSS
T ss_pred HHHHHHcCCCEEE-ecCCCCh
Confidence 7777777887555 9877654
No 411
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.78 E-value=0.00021 Score=73.37 Aligned_cols=88 Identities=28% Similarity=0.300 Sum_probs=53.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceecc-CCCCChHHHHHHHHHH-
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS-YTESDPVRIAVEGVET- 178 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~-~~~~dp~~i~~~~l~~- 178 (494)
..++.++|+||+||||++..++...++.|.+|+.|++.- +.++ .++.+.+++.... ....+..+-+...+..
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~----~~~~--~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~l 128 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH----ALDP--VYARKLGVDIDNLLVSQPDTGEQALEIAETL 128 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccc----hhHH--HHHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 457999999999999999999999998999999998742 1111 1233333321100 0111112222222322
Q ss_pred HhccCCcEEEEeCCCC
Q 011076 179 FKKENCDLIIVDTSGR 194 (494)
Q Consensus 179 ~~~~~~dvIIIDTaG~ 194 (494)
.+...+++|+||+...
T Consensus 129 i~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 129 VRSGAVDIIVVDSVAA 144 (321)
T ss_pred hhccCCcEEEEcchhh
Confidence 2445789999998664
No 412
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.78 E-value=0.00032 Score=67.08 Aligned_cols=81 Identities=19% Similarity=0.238 Sum_probs=46.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhc-CCceEEEEcccCcchhHHHHHhhhhccCcceec-cCCCCChHHHHHHHHHHH
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQNATKAKIPFYG-SYTESDPVRIAVEGVETF 179 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~-g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~-~~~~~dp~~i~~~~l~~~ 179 (494)
+.|+|+|++||||||+++.|+.++... +.++..+. |+.- ...+ ....+.. .....++ ....+++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e-~~~E-----~~~~----~~~~~i~q~~vg~~~-~~~~~~i~~a 70 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE-DPIE-----FVHE----SKRSLINQREVGLDT-LSFENALKAA 70 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc-CCcc-----cccc----CccceeeecccCCCc-cCHHHHHHHH
Confidence 469999999999999999999888754 33444333 3311 0000 0111110 0001111 1234455565
Q ss_pred hccCCcEEEEeCCC
Q 011076 180 KKENCDLIIVDTSG 193 (494)
Q Consensus 180 ~~~~~dvIIIDTaG 193 (494)
...+.|++++|-+.
T Consensus 71 Lr~~pd~ii~gEir 84 (198)
T cd01131 71 LRQDPDVILVGEMR 84 (198)
T ss_pred hcCCcCEEEEcCCC
Confidence 55689999999974
No 413
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.78 E-value=3.3e-05 Score=81.33 Aligned_cols=109 Identities=20% Similarity=0.273 Sum_probs=72.0
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHH---HHHhccCCeeEEEEeCccCCCCc-cc
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQA---QAFKQSVSVGAVIVTKMDGHAKG-GG 258 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~---~~f~~~~~i~~vVltK~D~~~~~-g~ 258 (494)
.|-+-+|||||.....-+..+.+ ..+.-.++||||+.|-++...+ .++...+.+ .-|+||+|+.+.. ..
T Consensus 75 ~Y~lnlIDTPGHVDFsYEVSRSL------AACEGalLvVDAsQGveAQTlAN~YlAle~~LeI-iPViNKIDLP~Adper 147 (603)
T COG0481 75 TYVLNLIDTPGHVDFSYEVSRSL------AACEGALLVVDASQGVEAQTLANVYLALENNLEI-IPVLNKIDLPAADPER 147 (603)
T ss_pred EEEEEEcCCCCccceEEEehhhH------hhCCCcEEEEECccchHHHHHHHHHHHHHcCcEE-EEeeecccCCCCCHHH
Confidence 57788999999876543332222 2457789999999987665544 455555655 7799999996542 11
Q ss_pred hhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCCC
Q 011076 259 ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (494)
Q Consensus 259 ~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~ 313 (494)
...-. |.+-.+.. .....+|++.|.| +++++|+|-+.+|.
T Consensus 148 vk~eI-------------e~~iGid~-~dav~~SAKtG~g-I~~iLe~Iv~~iP~ 187 (603)
T COG0481 148 VKQEI-------------EDIIGIDA-SDAVLVSAKTGIG-IEDVLEAIVEKIPP 187 (603)
T ss_pred HHHHH-------------HHHhCCCc-chheeEecccCCC-HHHHHHHHHhhCCC
Confidence 11111 11112222 2336789999999 99999999999963
No 414
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.78 E-value=0.00013 Score=75.03 Aligned_cols=147 Identities=20% Similarity=0.254 Sum_probs=82.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc---ccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHH
Q 011076 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA---DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVE 174 (494)
Q Consensus 98 ~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~---D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~ 174 (494)
.|.+..|++||+.|+||||++|.|.. . .+++. |..|+.. ......+.++...-..+-
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~------~--~l~~~~~~~~~~~~~------~~~~~~i~~~~~~l~e~~------ 79 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFG------T--SLVDETEIDDIRAEG------TSPTLEIKITKAELEEDG------ 79 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhH------h--hccCCCCccCccccc------CCcceEEEeeeeeeecCC------
Confidence 45677899999999999999999993 3 23333 3333311 011112222221111110
Q ss_pred HHHHHhccCCcEEEEeCCCCCch------hHHHHHHHHH-----------HHHh-----cCCCEEEEEecCC-CcccH--
Q 011076 175 GVETFKKENCDLIIVDTSGRHKQ------EAALFEEMRQ-----------VSEA-----TNPDLVIFVMDSS-IGQAA-- 229 (494)
Q Consensus 175 ~l~~~~~~~~dvIIIDTaG~~~~------~~~l~~el~~-----------i~~~-----~~~d~vllVvDa~-~g~~~-- 229 (494)
-...+.+|||||+... -+.+...+.. +.+. ...+.+|+.+.++ .|-..
T Consensus 80 -------~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~D 152 (373)
T COG5019 80 -------FHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLD 152 (373)
T ss_pred -------eEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHH
Confidence 1357889999998432 1222222221 1111 0246677888765 34444
Q ss_pred HHHHHHHhccCCeeEEEEeCccCCCCcc------chhHHHHhcCCCeEE
Q 011076 230 FDQAQAFKQSVSVGAVIVTKMDGHAKGG------GALSAVAATKSPVIF 272 (494)
Q Consensus 230 ~~~~~~f~~~~~i~~vVltK~D~~~~~g------~~ls~~~~~g~Pi~f 272 (494)
+..++.+.+.+++ +=|+.|.|.-+... ..........+||.+
T Consensus 153 Ie~Mk~ls~~vNl-IPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 153 IEAMKRLSKRVNL-IPVIAKADTLTDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred HHHHHHHhcccCe-eeeeeccccCCHHHHHHHHHHHHHHHHHhCCceeC
Confidence 4467788888877 77899999865532 122334456777775
No 415
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.77 E-value=0.00019 Score=68.60 Aligned_cols=106 Identities=18% Similarity=0.169 Sum_probs=59.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCC-----CCChHHHHHHHH
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYT-----ESDPVRIAVEGV 176 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~-----~~dp~~i~~~~l 176 (494)
+++++.|++|+||||++..++..+...|++|.++++ -..|...|...+ +++...... ......
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap---T~~Aa~~L~~~~---~~~a~Ti~~~l~~~~~~~~~------ 86 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAP---TNKAAKELREKT---GIEAQTIHSFLYRIPNGDDE------ 86 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEES---SHHHHHHHHHHH---TS-EEEHHHHTTEECCEECC------
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECC---cHHHHHHHHHhh---CcchhhHHHHHhcCCccccc------
Confidence 468888999999999999999999999999999887 223333343331 121111000 000000
Q ss_pred HHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCC--CEEEEEecCC
Q 011076 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNP--DLVIFVMDSS 224 (494)
Q Consensus 177 ~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~--d~vllVvDa~ 224 (494)
.......++++|||-++..... . +..+...+.. ..++||-|..
T Consensus 87 ~~~~~~~~~vliVDEasmv~~~--~---~~~ll~~~~~~~~klilvGD~~ 131 (196)
T PF13604_consen 87 GRPELPKKDVLIVDEASMVDSR--Q---LARLLRLAKKSGAKLILVGDPN 131 (196)
T ss_dssp SSCC-TSTSEEEESSGGG-BHH--H---HHHHHHHS-T-T-EEEEEE-TT
T ss_pred ccccCCcccEEEEecccccCHH--H---HHHHHHHHHhcCCEEEEECCcc
Confidence 0000135789999999997643 2 2233343333 4688999975
No 416
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.76 E-value=0.00016 Score=78.59 Aligned_cols=54 Identities=26% Similarity=0.240 Sum_probs=44.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIP 158 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~ 158 (494)
..++++.|+||+||||++..++...+++|.+++.++.+-. .+|+...+.+.+++
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs----~~~i~~~~~~lg~~ 316 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANKERAILFAYEES----RAQLLRNAYSWGID 316 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC----HHHHHHHHHHcCCC
Confidence 4679999999999999999999999999999999998643 44566666666654
No 417
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.75 E-value=0.00012 Score=71.17 Aligned_cols=39 Identities=36% Similarity=0.468 Sum_probs=33.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhc-CCceEEEEccc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADT 139 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~-g~kVaiVs~D~ 139 (494)
..++++.|+||+|||+++..++....++ |.+|..|+.+.
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 4579999999999999999999888888 99999999864
No 418
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.74 E-value=8.2e-05 Score=74.72 Aligned_cols=79 Identities=24% Similarity=0.322 Sum_probs=49.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc--CcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT--FRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~--~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~ 178 (494)
.+.|++.||+|||||||++++..|+.+...+..+.--|| |......-|. .+-.+ + . ...-...|+..
T Consensus 125 ~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI---~QREv---G----~-dT~sF~~aLra 193 (353)
T COG2805 125 RGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLI---NQREV---G----R-DTLSFANALRA 193 (353)
T ss_pred CceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhh---hHHHh---c----c-cHHHHHHHHHH
Confidence 467999999999999999999999998765555555566 1111100000 00000 0 1 11224557777
Q ss_pred HhccCCcEEEEe
Q 011076 179 FKKENCDLIIVD 190 (494)
Q Consensus 179 ~~~~~~dvIIID 190 (494)
+.++++|+|+|-
T Consensus 194 ALReDPDVIlvG 205 (353)
T COG2805 194 ALREDPDVILVG 205 (353)
T ss_pred HhhcCCCEEEEe
Confidence 778899999973
No 419
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.74 E-value=3.4e-05 Score=71.10 Aligned_cols=43 Identities=37% Similarity=0.435 Sum_probs=38.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcch
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~ 143 (494)
+.+|.|+|++||||||++..|...|...|+++.+++.|..|.+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~ 44 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHG 44 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhc
Confidence 5789999999999999999999999999999999999987763
No 420
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=0.00011 Score=77.01 Aligned_cols=133 Identities=17% Similarity=0.270 Sum_probs=80.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcc-cCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD-TFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D-~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
.++.+++..|-+||||++-||..+=.-- ....-|..- ..+.+..|.++ .-++-||.+..+.- .|
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaI-q~AG~Vk~rk~~~~a~SDWM~-iEkqRGISVtsSVM-------------qF 76 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAI-QEAGTVKGRKSGKHAKSDWME-IEKQRGISVTSSVM-------------QF 76 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchh-hhcceeeeccCCcccccHHHH-HHHhcCceEEeeEE-------------Ee
Confidence 4579999999999999999998652100 000111110 11222223222 23344565433221 22
Q ss_pred hccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhc----cCCeeEEEEeCccCCCC
Q 011076 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQ----SVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~----~~~i~~vVltK~D~~~~ 255 (494)
.-.++-+-|+||||.....++-.+-| ...|..++|+||.-|-+.. ..+.|.- .+|| .-.+||+|...+
T Consensus 77 ~Y~~~~iNLLDTPGHeDFSEDTYRtL------tAvDsAvMVIDaAKGiE~q-T~KLfeVcrlR~iPI-~TFiNKlDR~~r 148 (528)
T COG4108 77 DYADCLVNLLDTPGHEDFSEDTYRTL------TAVDSAVMVIDAAKGIEPQ-TLKLFEVCRLRDIPI-FTFINKLDREGR 148 (528)
T ss_pred ccCCeEEeccCCCCccccchhHHHHH------HhhheeeEEEecccCccHH-HHHHHHHHhhcCCce-EEEeeccccccC
Confidence 22467788999999988776665544 2458889999998886543 2333332 2566 788999999777
Q ss_pred c
Q 011076 256 G 256 (494)
Q Consensus 256 ~ 256 (494)
.
T Consensus 149 d 149 (528)
T COG4108 149 D 149 (528)
T ss_pred C
Confidence 4
No 421
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.72 E-value=6.3e-05 Score=73.65 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=33.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
++|.++|++||||||++.+|+.+|..+|++|+++..
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 478999999999999999999999999999999964
No 422
>PRK07667 uridine kinase; Provisional
Probab=97.71 E-value=6.1e-05 Score=71.74 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=37.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~ 140 (494)
+.+|++.|++||||||++..|+..|...|.++.+++.|.|
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 4789999999999999999999999999999999999975
No 423
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=97.70 E-value=0.00019 Score=68.47 Aligned_cols=115 Identities=16% Similarity=0.142 Sum_probs=59.4
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH----HHHHHh---ccCCeeEEEEeCccCCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFK---QSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~----~~~~f~---~~~~i~~vVltK~D~~~~ 255 (494)
.+.+.|.||||.... +.. .....+|.+++|.|.+......+ ....+. ...|+ .+|.||.|+...
T Consensus 65 ~v~l~iwDTaG~~~~-------~~~-~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~pi-ilvgNK~DL~~~ 135 (195)
T cd01873 65 SVSLRLWDTFGDHDK-------DRR-FAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPV-ILVGCKLDLRYA 135 (195)
T ss_pred EEEEEEEeCCCChhh-------hhc-ccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhcccc
Confidence 467889999998531 111 12347899999999875432211 112222 22344 899999997431
Q ss_pred ccchh-----HHHHhc-CCCeEEeccccccc-cccccCccchhhcccCCCCchHHHHHHHH
Q 011076 256 GGGAL-----SAVAAT-KSPVIFIGTGEHMD-EFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (494)
Q Consensus 256 ~g~~l-----s~~~~~-g~Pi~fi~~Ge~i~-~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~ 309 (494)
..... ...... +........|+.+. .+. .+..-+|++.|.| ++++++.+.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~--~~~~E~SAkt~~~-V~e~F~~~~~ 193 (195)
T cd01873 136 DLDEVNRARRPLARPIKNADILPPETGRAVAKELG--IPYYETSVVTQFG-VKDVFDNAIR 193 (195)
T ss_pred ccchhhhcccccccccccCCccCHHHHHHHHHHhC--CEEEEcCCCCCCC-HHHHHHHHHH
Confidence 00000 000000 00000111222221 111 1334579999999 9998888754
No 424
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.70 E-value=0.00011 Score=74.40 Aligned_cols=41 Identities=12% Similarity=0.248 Sum_probs=28.5
Q ss_pred CCEEEEEecCCC-c--ccHHHHHHHHhccCCeeEEEEeCccCCCC
Q 011076 214 PDLVIFVMDSSI-G--QAAFDQAQAFKQSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 214 ~d~vllVvDa~~-g--~~~~~~~~~f~~~~~i~~vVltK~D~~~~ 255 (494)
.+.+++.++++. + +..+..++.+.+.+++ +=|+.|.|.-+.
T Consensus 114 VH~cLYfI~pt~~~L~~~Di~~mk~Ls~~vNv-IPvIaKaD~lt~ 157 (281)
T PF00735_consen 114 VHACLYFIPPTGHGLKPLDIEFMKRLSKRVNV-IPVIAKADTLTP 157 (281)
T ss_dssp EEEEEEEE-TTSSSS-HHHHHHHHHHTTTSEE-EEEESTGGGS-H
T ss_pred cceEEEEEcCCCccchHHHHHHHHHhcccccE-EeEEecccccCH
Confidence 356888998763 3 3345577888888877 789999998654
No 425
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.70 E-value=4.6e-05 Score=70.22 Aligned_cols=37 Identities=30% Similarity=0.427 Sum_probs=34.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~ 139 (494)
++.|+|++||||||++.+|+..|..+|++|++|..|.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~ 37 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDH 37 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 4789999999999999999999999999999998764
No 426
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.69 E-value=0.00082 Score=65.30 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=34.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~ 139 (494)
...++++|+||+||||++..++....++|.++..++.+.
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE 58 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 357999999999999999999987777899999999854
No 427
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.00015 Score=68.45 Aligned_cols=158 Identities=18% Similarity=0.223 Sum_probs=91.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..++|+|-++||||++++...+---.+.| -...|++|..... ++..
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd~~Y---------------------qATIGiDFlskt~-------------~l~d 68 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFDNTY---------------------QATIGIDFLSKTM-------------YLED 68 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhcccc---------------------cceeeeEEEEEEE-------------EEcC
Confidence 56999999999999999998843222222 2223555432110 0011
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhc------cC-CeeEEEEeCccCCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQ------SV-SVGAVIVTKMDGHA 254 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~------~~-~i~~vVltK~D~~~ 254 (494)
..+.+-+-||||...... +.. ....++..+++|-|-+.-+...+.-+.+++ .- .+..+|-||.|+..
T Consensus 69 ~~vrLQlWDTAGQERFrs-lip-----sY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~d 142 (221)
T KOG0094|consen 69 RTVRLQLWDTAGQERFRS-LIP-----SYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSD 142 (221)
T ss_pred cEEEEEEEecccHHHHhh-hhh-----hhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccc
Confidence 246677999999753221 111 113467888999998755443332222221 11 23477889999977
Q ss_pred CccchhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHHhCCCCC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQ 315 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~~~ 315 (494)
+.+..... |++. .++..+ -.-.|+..|.+ +..|+.+|...+++.+
T Consensus 143 krqvs~eE-------------g~~kAkel~a~--f~etsak~g~N-Vk~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 143 KRQVSIEE-------------GERKAKELNAE--FIETSAKAGEN-VKQLFRRIAAALPGME 188 (221)
T ss_pred hhhhhHHH-------------HHHHHHHhCcE--EEEecccCCCC-HHHHHHHHHHhccCcc
Confidence 63322211 1211 223321 12368999999 9999999999987553
No 428
>COG4240 Predicted kinase [General function prediction only]
Probab=97.68 E-value=0.00024 Score=68.82 Aligned_cols=44 Identities=30% Similarity=0.457 Sum_probs=39.1
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcC-CceEEEEcccC
Q 011076 97 KKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKG-WKPALVCADTF 140 (494)
Q Consensus 97 ~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g-~kVaiVs~D~~ 140 (494)
..++|.++.|+|+|||||||++..+-..|..+| ++++-.|.|.+
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDl 90 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDL 90 (300)
T ss_pred hcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhh
Confidence 356789999999999999999999999999987 79998888754
No 429
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.68 E-value=0.00043 Score=68.03 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=34.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~ 139 (494)
..++++.|+||+||||++..++....++|.++..|+.+-
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 457999999999999999999988778899999999865
No 430
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.67 E-value=0.00018 Score=71.29 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=32.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
.++|.|++|+|||+++.+++.++.++|++|.+++.
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 58999999999999999999999999999999876
No 431
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.67 E-value=5.4e-05 Score=70.59 Aligned_cols=45 Identities=38% Similarity=0.506 Sum_probs=41.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcch
Q 011076 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (494)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~ 143 (494)
.++.+|-|+|++||||||++++|...|..+|+.+.+.+-|.-|.+
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~g 65 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHG 65 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhc
Confidence 457799999999999999999999999999999999999987653
No 432
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=97.65 E-value=0.016 Score=61.75 Aligned_cols=117 Identities=21% Similarity=0.166 Sum_probs=66.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH-hcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCC-Ch--HHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ-KKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTES-DP--VRIAVEGV 176 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~-~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~-dp--~~i~~~~l 176 (494)
..++++.|+||+||||++..+|..++ +.|++|+++|.+.-...-...+ .+...+++........ +. ......++
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~Rl--~~~~~~v~~~~~~~~~l~~~~~~~~~~~~ 271 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERL--LASKSGINTGNIRTGRFNDSDFNRLLNAV 271 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHH--HHHHcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 45789999999999999999998887 6799999999875322222222 2233444433211111 11 12233344
Q ss_pred HHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCC
Q 011076 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS 224 (494)
Q Consensus 177 ~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~ 224 (494)
..+. +.++.|.|+++... +.+...++.+.... .+.-++|+|.-
T Consensus 272 ~~l~--~~~l~i~d~~~~t~--~~i~~~~r~~~~~~-~~~~lvvIDyL 314 (421)
T TIGR03600 272 DRLS--EKDLYIDDTGGLTV--AQIRSIARRIKRKK-GGLDLIVVDYI 314 (421)
T ss_pred HHHh--cCCEEEECCCCCCH--HHHHHHHHHHHHhc-CCCCEEEEecc
Confidence 4443 45677778877542 23333333333322 23346788863
No 433
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.65 E-value=0.00045 Score=65.22 Aligned_cols=36 Identities=25% Similarity=0.403 Sum_probs=32.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
.+|+|.|++||||||++..|+.+|...|++|.++..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 39 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTRE 39 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 579999999999999999999999999999977654
No 434
>PRK12289 GTPase RsgA; Reviewed
Probab=97.64 E-value=5e-05 Score=79.06 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 011076 102 SVIMFVGLQGSGKTTTCTKYA 122 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA 122 (494)
.+++|+|++||||||++|.|.
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~ 193 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLI 193 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHc
Confidence 368999999999999999999
No 435
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.64 E-value=0.00064 Score=73.28 Aligned_cols=98 Identities=24% Similarity=0.309 Sum_probs=63.7
Q ss_pred HHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCccee
Q 011076 81 NELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160 (494)
Q Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~ 160 (494)
.+|-++|+.. +. +..++++.|.||+||||++..++..+.+.|.+|+.|+.+- ..+|++..+.+.++.+.
T Consensus 81 ~~LD~vLgGG---i~----~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE----s~~qi~~ra~rlg~~~~ 149 (454)
T TIGR00416 81 GELDRVLGGG---IV----PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE----SLQQIKMRAIRLGLPEP 149 (454)
T ss_pred HHHHHHhcCC---cc----CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC----CHHHHHHHHHHcCCChH
Confidence 4566666542 11 1457899999999999999999999988888999999853 23556655555554321
Q ss_pred c--cCCCCChHHHHHHHHHHHhccCCcEEEEeCCC
Q 011076 161 G--SYTESDPVRIAVEGVETFKKENCDLIIVDTSG 193 (494)
Q Consensus 161 ~--~~~~~dp~~i~~~~l~~~~~~~~dvIIIDTaG 193 (494)
. ...+.+...+ +..+...++++++||.--
T Consensus 150 ~l~~~~e~~~~~I----~~~i~~~~~~~vVIDSIq 180 (454)
T TIGR00416 150 NLYVLSETNWEQI----CANIEEENPQACVIDSIQ 180 (454)
T ss_pred HeEEcCCCCHHHH----HHHHHhcCCcEEEEecch
Confidence 1 1222333222 233344589999999743
No 436
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.62 E-value=0.00072 Score=72.75 Aligned_cols=98 Identities=26% Similarity=0.313 Sum_probs=63.6
Q ss_pred HHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCccee
Q 011076 81 NELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160 (494)
Q Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~ 160 (494)
.+|-++|+.. +. +..++++.|+||+||||++..++..+.++|.+|+.++..- ..+|+...+.+.++...
T Consensus 67 ~~LD~~LgGG---i~----~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee----s~~qi~~ra~rlg~~~~ 135 (446)
T PRK11823 67 GELDRVLGGG---LV----PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE----SASQIKLRAERLGLPSD 135 (446)
T ss_pred HHHHHHhcCC---cc----CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc----cHHHHHHHHHHcCCChh
Confidence 5566666642 21 1347899999999999999999999988899999999743 23455555555544211
Q ss_pred c--cCCCCChHHHHHHHHHHHhccCCcEEEEeCCC
Q 011076 161 G--SYTESDPVRIAVEGVETFKKENCDLIIVDTSG 193 (494)
Q Consensus 161 ~--~~~~~dp~~i~~~~l~~~~~~~~dvIIIDTaG 193 (494)
. ...+.+.. ..+..++..++++|+||..-
T Consensus 136 ~l~~~~e~~l~----~i~~~i~~~~~~lVVIDSIq 166 (446)
T PRK11823 136 NLYLLAETNLE----AILATIEEEKPDLVVIDSIQ 166 (446)
T ss_pred cEEEeCCCCHH----HHHHHHHhhCCCEEEEechh
Confidence 0 11222322 22333445678999999855
No 437
>PRK08233 hypothetical protein; Provisional
Probab=97.62 E-value=0.00012 Score=68.07 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=28.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r 141 (494)
+.+|++.|++||||||++..|+.+|.. ..++..|.|+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~----~~~~~~d~~~ 39 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKN----SKALYFDRYD 39 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCC----CceEEECCEE
Confidence 468999999999999999999977632 2445555554
No 438
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.62 E-value=0.00094 Score=58.18 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=34.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~ 142 (494)
..++++|+||+||||++..++..+...+..+..++++.+..
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~ 60 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLE 60 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhh
Confidence 46899999999999999999999887788888888865443
No 439
>PRK08760 replicative DNA helicase; Provisional
Probab=97.61 E-value=0.0035 Score=68.03 Aligned_cols=115 Identities=18% Similarity=0.190 Sum_probs=67.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHh-cCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCC-Ch--HHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTES-DP--VRIAVEGV 176 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~-~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~-dp--~~i~~~~l 176 (494)
...|++.|+||+||||++..+|...+. .|++|++.+.+.-...-...+.... .+++........ .. ......++
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~a~~--s~i~~~~i~~g~l~~~e~~~~~~a~ 306 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISSN--GRINAQRLRTGALEDEDWARVTGAI 306 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHHHhh--CCCcHHHHhcCCCCHHHHHHHHHHH
Confidence 457899999999999999999998874 5999999999765433333332222 223222111111 11 12233444
Q ss_pred HHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecC
Q 011076 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDS 223 (494)
Q Consensus 177 ~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa 223 (494)
..+. ...+.|-|+|+.. -+.+...++.+..... .-++|+|.
T Consensus 307 ~~l~--~~~l~I~d~~~~t--~~~I~~~~r~l~~~~~--~~lVvIDy 347 (476)
T PRK08760 307 KMLK--ETKIFIDDTPGVS--PEVLRSKCRRLKREHD--LGLIVIDY 347 (476)
T ss_pred HHHh--cCCEEEeCCCCCC--HHHHHHHHHHHHHhcC--CCEEEEec
Confidence 4443 3567788888864 2344444444443323 34777885
No 440
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=97.61 E-value=0.00077 Score=69.04 Aligned_cols=154 Identities=19% Similarity=0.223 Sum_probs=85.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc-----hhHHH-----HHhhhh--c---cCcceeccCCCCC
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA-----GAFDQ-----LKQNAT--K---AKIPFYGSYTESD 167 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~-----~a~~q-----Lk~~~~--~---~~i~~~~~~~~~d 167 (494)
.+++||+..+||||++.-|..|..+.|+++..|+.|+..+ |++.. +..-.+ . .-+-.|+..+...
T Consensus 105 rv~vVGp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~sitiPGsiaA~~i~~~~D~~eGf~l~~pLV~~FG~~sp~~ 184 (415)
T KOG2749|consen 105 RVMVVGPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQGSITIPGSIAAIPIEMPLDVIEGFSLTAPLVYNFGLTSPST 184 (415)
T ss_pred EEEEECCCccchHHHHHHHHHHHHHcCCcceEEEcCCCCCceecccchhheecccccchhhCcccCCceeeeccCCCCCc
Confidence 6999999999999999999999999999999999998653 33211 110000 0 1112233333333
Q ss_pred hHHHHHHHHH--------HH---hccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHH
Q 011076 168 PVRIAVEGVE--------TF---KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAF 236 (494)
Q Consensus 168 p~~i~~~~l~--------~~---~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f 236 (494)
..++....+. .+ .+....=.||||.|+.. .+ -.+.+..+....+.|.+ +|+|.-. -..+..+.+
T Consensus 185 N~~LY~~~~s~La~v~~~~~~~n~~ar~sG~iInT~g~i~-~e-gy~~llhai~~f~v~vv-iVLg~Er--Ly~~lkk~~ 259 (415)
T KOG2749|consen 185 NLELYKALVSELAEVLKQRLSLNPEARVSGCIINTCGWIE-GE-GYAALLHAIKAFEVDVV-IVLGQER--LYSSLKKDL 259 (415)
T ss_pred CHHHHHHHHHHHHHHHHHHhccCchhcccceEEeccceec-cc-cHHHHHHHHHHcCccEE-EEeccHH--HHHHHHhhc
Confidence 3333222221 11 11122347999999986 32 33444455566666654 5555321 111122233
Q ss_pred hccCCeeEEEEeCccCC-CCccchhH
Q 011076 237 KQSVSVGAVIVTKMDGH-AKGGGALS 261 (494)
Q Consensus 237 ~~~~~i~~vVltK~D~~-~~~g~~ls 261 (494)
...-.+..+-+-|.++. .+.+....
T Consensus 260 ~~~~~v~vv~lpKsgGv~~Rs~~~r~ 285 (415)
T KOG2749|consen 260 PPKKNVRVVKLPKSGGVVARSKEVRR 285 (415)
T ss_pred cccccceEEEecCCCCeEeehHHHHH
Confidence 32234567778888874 34444333
No 441
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.61 E-value=0.0002 Score=71.55 Aligned_cols=43 Identities=30% Similarity=0.446 Sum_probs=38.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhH
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF 145 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~ 145 (494)
+|+++|.+||||||++.+|+..|.+.|.++++++.|.|..-..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r 43 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYER 43 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCc
Confidence 4889999999999999999999998899999999999876433
No 442
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.60 E-value=6.6e-05 Score=70.72 Aligned_cols=39 Identities=31% Similarity=0.460 Sum_probs=35.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r 141 (494)
+|+++|.+||||||++..|+..+...|.++.+++.|-|-
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 488999999999999999999999889999999998754
No 443
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=97.60 E-value=0.001 Score=75.35 Aligned_cols=141 Identities=13% Similarity=0.175 Sum_probs=78.1
Q ss_pred EEEEEcC-CCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 103 VIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 103 vI~lvG~-~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
.++++|. +|+|||+++..|+.+|.++|++|...-++...|-..+....+ ..........+...+.+..+.
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~p~~~~~~~~~--------~~~~~~~~~~~~I~~~~~~l~- 74 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQPPLTMSEVEAL--------LASGQLDELLEEIVARYHALA- 74 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCHHHHHHH--------HhccCChHHHHHHHHHHHHhc-
Confidence 4677766 499999999999999999999999887654333222222110 000111112233344444433
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc--cHHHHH----HHHh--ccCCeeEEEEeC--cc
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQA----QAFK--QSVSVGAVIVTK--MD 251 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~--~~~~~~----~~f~--~~~~i~~vVltK--~D 251 (494)
.+||++|||+++.......-......+.... ...+++|+++..+. ++.+.+ ..|. ...++.++|+|+ +|
T Consensus 75 ~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L-~~pVILV~~~~~~si~d~~~~i~~~~~~l~~~~~~~v~GVIvNr~~v~ 153 (684)
T PRK05632 75 KDCDVVLVEGLDPTRKHPFEFSLNAEIAKNL-GAEVVLVSSGGNDTPEELAERIELAASSFGGAKNANILGVIINKLNAP 153 (684)
T ss_pred cCCCEEEEeCcCCCCcCcccCchHHHHHHHh-CCCEEEEECCCCCChHHHHHHHHHHHHHhccCCCCcEEEEEEECCCCC
Confidence 6899999999875432100000011223222 34677888876442 223322 2332 235678999999 55
Q ss_pred CC
Q 011076 252 GH 253 (494)
Q Consensus 252 ~~ 253 (494)
..
T Consensus 154 ~~ 155 (684)
T PRK05632 154 VD 155 (684)
T ss_pred HH
Confidence 43
No 444
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.60 E-value=0.00058 Score=70.29 Aligned_cols=38 Identities=32% Similarity=0.269 Sum_probs=34.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D 138 (494)
..++.++|+||+||||++..++...++.|.+++.|++.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E 92 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAE 92 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECcc
Confidence 45788999999999999999999999999999999984
No 445
>PRK15453 phosphoribulokinase; Provisional
Probab=97.60 E-value=0.00027 Score=71.03 Aligned_cols=49 Identities=22% Similarity=0.358 Sum_probs=41.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQL 148 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qL 148 (494)
++.+|+++|.+||||||++..|+..|...+.++++++.|.|..-...++
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~ 52 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEM 52 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhH
Confidence 3568999999999999999999999988788899999999876444333
No 446
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.59 E-value=0.00017 Score=66.76 Aligned_cols=110 Identities=23% Similarity=0.242 Sum_probs=56.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCCh----HHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDP----VRIAVEGV 176 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp----~~i~~~~l 176 (494)
+++++++|-|||||||.+..+...+ .+.-+|+.-.+. -..+.+.|.......-...| .++-..+.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l----~~~~ivNyG~~M-------le~A~k~glve~rD~~Rklp~e~Q~~lq~~Aa 72 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL----VKHKIVNYGDLM-------LEIAKKKGLVEHRDEMRKLPLENQRELQAEAA 72 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH----hhceeeeHhHHH-------HHHHHHhCCcccHHHHhcCCHHHHHHHHHHHH
Confidence 5789999999999999999988666 234445542211 11112222211111111222 23334444
Q ss_pred HHHhccCCcEEEEeCCCCCchhHHHHHHHH-HHHHhcCCCEEEEEec
Q 011076 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMR-QVSEATNPDLVIFVMD 222 (494)
Q Consensus 177 ~~~~~~~~dvIIIDTaG~~~~~~~l~~el~-~i~~~~~~d~vllVvD 222 (494)
.+..+...+ +|+||-+...+...+..-+- ++...++||.++++-+
T Consensus 73 ~rI~~~~~~-iivDtH~~IkTP~GylpgLP~~Vl~~l~pd~ivllEa 118 (189)
T COG2019 73 KRIAEMALE-IIVDTHATIKTPAGYLPGLPSWVLEELNPDVIVLLEA 118 (189)
T ss_pred HHHHHhhhc-eEEeccceecCCCccCCCCcHHHHHhcCCCEEEEEeC
Confidence 444433444 88887655433322222222 3455678997666554
No 447
>PRK05439 pantothenate kinase; Provisional
Probab=97.59 E-value=0.00018 Score=73.58 Aligned_cols=43 Identities=28% Similarity=0.297 Sum_probs=37.8
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHh--cCCceEEEEcccC
Q 011076 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQK--KGWKPALVCADTF 140 (494)
Q Consensus 98 ~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~--~g~kVaiVs~D~~ 140 (494)
.+.|.+|.+.|+|||||||++..|+..|.+ .+.+|.+|+.|-|
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF 127 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF 127 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence 345789999999999999999999998876 3789999999976
No 448
>PF13245 AAA_19: Part of AAA domain
Probab=97.59 E-value=0.00015 Score=58.76 Aligned_cols=45 Identities=24% Similarity=0.297 Sum_probs=34.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhc----CCceEEEEcccCcchhHHHHH
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKK----GWKPALVCADTFRAGAFDQLK 149 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~----g~kVaiVs~D~~r~~a~~qLk 149 (494)
.++++.|+||+||||++..++.++... +.+|++++. ...+.+.+.
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~---t~~aa~~l~ 59 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP---TRAAADELR 59 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC---CHHHHHHHH
Confidence 457779999999998888888888754 788888876 444444443
No 449
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.59 E-value=0.00045 Score=66.80 Aligned_cols=38 Identities=29% Similarity=0.331 Sum_probs=33.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcC------CceEEEEcc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKG------WKPALVCAD 138 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g------~kVaiVs~D 138 (494)
..++.++|+||+||||++..++......+ .+|..++.+
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC
Confidence 35799999999999999999998877666 888888885
No 450
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=97.59 E-value=0.0096 Score=63.71 Aligned_cols=115 Identities=15% Similarity=0.117 Sum_probs=66.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHh-cCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCC-CChHH--HHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE-SDPVR--IAVEGV 176 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~-~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~-~dp~~--i~~~~l 176 (494)
...+++.|+||+||||++..++..++. .|++|++++.+.-.......+.. ...++++...... -...+ ....+.
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~R~~~--~~~~v~~~~~~~g~l~~~~~~~~~~a~ 272 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAMRMLS--SESRVDSQKLRTGKLSDEDWEKLTSAA 272 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHHHHHH--HhcCCCHHHhccCCCCHHHHHHHHHHH
Confidence 357899999999999999999998875 69999999998644333333322 2223332221111 11111 123334
Q ss_pred HHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecC
Q 011076 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDS 223 (494)
Q Consensus 177 ~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa 223 (494)
..+. ...+.|.|+++.. -+.+...+..+.....+ -++|+|.
T Consensus 273 ~~l~--~~~l~i~d~~~~~--~~~i~~~i~~~~~~~~~--~~vvID~ 313 (434)
T TIGR00665 273 GKLS--EAPLYIDDTPGLT--ITELRAKARRLKREHGL--GLIVIDY 313 (434)
T ss_pred HHHh--cCCEEEECCCCCC--HHHHHHHHHHHHHhcCC--CEEEEcc
Confidence 4443 3456677887653 23344444444433333 3677886
No 451
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.58 E-value=0.00021 Score=67.16 Aligned_cols=45 Identities=18% Similarity=0.181 Sum_probs=33.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHh----------cCCceEEEEcccCcchhHH
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQK----------KGWKPALVCADTFRAGAFD 146 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~----------~g~kVaiVs~D~~r~~a~~ 146 (494)
.+++++|++|+||||++..++..+.. ++.+|+.++.|........
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~ 87 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIAR 87 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHH
Confidence 47899999999999999999999886 5779999999865433333
No 452
>PRK04040 adenylate kinase; Provisional
Probab=97.57 E-value=9.2e-05 Score=70.42 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~ 139 (494)
+.+|+++|.|||||||++..|+..|. .+ ...++.+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~-~~--~~~~~~g~ 37 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK-ED--YKIVNFGD 37 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc-cC--CeEEecch
Confidence 46899999999999999999998774 13 33455544
No 453
>PRK12288 GTPase RsgA; Reviewed
Probab=97.56 E-value=7e-05 Score=77.90 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEE
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALV 135 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiV 135 (494)
+++|+|.+|||||||+|.|. +.....+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll------~~~~~~t 233 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALL------PEAEILV 233 (347)
T ss_pred CEEEECCCCCCHHHHHHHhc------cccceee
Confidence 58999999999999999999 6554443
No 454
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.56 E-value=0.00055 Score=61.91 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=29.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcch
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~ 143 (494)
+|+++|+|||||||++..|+..+ ...+++.|.++..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~-----~~~~i~~D~~~~~ 36 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL-----GAPFIDGDDLHPP 36 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc-----CCEEEeCcccccH
Confidence 37899999999999999999653 4567899998875
No 455
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.56 E-value=0.00013 Score=67.56 Aligned_cols=39 Identities=38% Similarity=0.466 Sum_probs=35.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~ 140 (494)
.++.|+|++||||||++.+|+..|..+|++|++|..|..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~ 40 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHH 40 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 479999999999999999999999999999999987654
No 456
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.56 E-value=0.00014 Score=71.09 Aligned_cols=43 Identities=28% Similarity=0.404 Sum_probs=37.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEE-EEcccCc
Q 011076 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPAL-VCADTFR 141 (494)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVai-Vs~D~~r 141 (494)
+++.+|+|+|++||||||++..|+..+...+..+.+ ++.|.|.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~ 74 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH 74 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc
Confidence 457899999999999999999999999987777777 8887654
No 457
>PHA00729 NTP-binding motif containing protein
Probab=97.55 E-value=0.00058 Score=66.65 Aligned_cols=24 Identities=42% Similarity=0.339 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQ 126 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~ 126 (494)
.|+++|+|||||||++.+|+..+.
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998764
No 458
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00045 Score=72.16 Aligned_cols=98 Identities=28% Similarity=0.376 Sum_probs=71.3
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCc
Q 011076 78 AIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKI 157 (494)
Q Consensus 78 ~v~~eL~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i 157 (494)
.-..||-+.|+..--+ ..+|++-|-||.|||||+-.++..+++++ +|+-|+. -.+..|++--++|.++
T Consensus 77 tg~~EldRVLGGG~V~-------Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsG----EES~~QiklRA~RL~~ 144 (456)
T COG1066 77 TGIEELDRVLGGGLVP-------GSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSG----EESLQQIKLRADRLGL 144 (456)
T ss_pred CChHHHHhhhcCCccc-------ccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeC----CcCHHHHHHHHHHhCC
Confidence 3457777788764321 34688889999999999999999999988 9999997 3456788888888886
Q ss_pred ceec--cCCCCChHHHHHHHHHHHhccCCcEEEEeC
Q 011076 158 PFYG--SYTESDPVRIAVEGVETFKKENCDLIIVDT 191 (494)
Q Consensus 158 ~~~~--~~~~~dp~~i~~~~l~~~~~~~~dvIIIDT 191 (494)
+... ...+++..+| ++.+....+++++||.
T Consensus 145 ~~~~l~l~aEt~~e~I----~~~l~~~~p~lvVIDS 176 (456)
T COG1066 145 PTNNLYLLAETNLEDI----IAELEQEKPDLVVIDS 176 (456)
T ss_pred CccceEEehhcCHHHH----HHHHHhcCCCEEEEec
Confidence 5422 1234443333 4455567899999996
No 459
>PRK13796 GTPase YqeH; Provisional
Probab=97.54 E-value=0.00021 Score=74.96 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYY 124 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~ 124 (494)
..++++|.|||||||++|+|...
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhh
Confidence 35899999999999999999843
No 460
>PLN02796 D-glycerate 3-kinase
Probab=97.54 E-value=0.0004 Score=71.77 Aligned_cols=42 Identities=33% Similarity=0.436 Sum_probs=37.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCc
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r 141 (494)
+|.+|+|+|++||||||++..|+..+...|.++..|+.|-|-
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 478899999999999999999999998778889999987654
No 461
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.53 E-value=0.00018 Score=66.95 Aligned_cols=30 Identities=33% Similarity=0.339 Sum_probs=24.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEE
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs 136 (494)
...++++|.+||||||+++.|. +.+..-++
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~------~~~~~~~~ 144 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLR------GKKVAKVG 144 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHh------CCCceeec
Confidence 3578999999999999999999 65554443
No 462
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.53 E-value=0.00015 Score=68.05 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=35.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcc
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D 138 (494)
.+.++.|+|++||||||++.+|...|..+|++|+.|..+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~ 43 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEc
Confidence 456899999999999999999999999889999999874
No 463
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.52 E-value=0.00011 Score=68.14 Aligned_cols=38 Identities=29% Similarity=0.361 Sum_probs=35.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D 138 (494)
+.++.|+|..||||||++.+|...|..+|++|++|-.+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~ 39 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHA 39 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEec
Confidence 46899999999999999999999999999999999874
No 464
>PRK05973 replicative DNA helicase; Provisional
Probab=97.51 E-value=0.00079 Score=66.36 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=35.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~ 140 (494)
...+++.|+||+||||++..++....++|++|..++.+-.
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes 103 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT 103 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC
Confidence 3478999999999999999999988888999999998654
No 465
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=97.51 E-value=0.00085 Score=64.54 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 011076 103 VIMFVGLQGSGKTTTCTKYA 122 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA 122 (494)
.|+++|.+||||||+++.++
T Consensus 2 KIvlvGd~gVGKTSLi~~~~ 21 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLIC 21 (202)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999998
No 466
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.51 E-value=0.00015 Score=69.60 Aligned_cols=40 Identities=30% Similarity=0.312 Sum_probs=35.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCc
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r 141 (494)
++.+|+++|++||||||++..|+..+ .+..+.+++.|.|-
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~~ 44 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL--GDESIAVIPQDSYY 44 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh--CCCceEEEeCCccc
Confidence 46799999999999999999999887 45689999998763
No 467
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.51 E-value=0.014 Score=61.22 Aligned_cols=40 Identities=23% Similarity=0.192 Sum_probs=31.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcC--CceEEEEcccC
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKG--WKPALVCADTF 140 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g--~kVaiVs~D~~ 140 (494)
+..+++.|+||+||||++..++..+...+ ..+.-|++..+
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~ 96 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID 96 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC
Confidence 34588999999999999999999998764 55666666443
No 468
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=97.50 E-value=0.00015 Score=71.06 Aligned_cols=40 Identities=25% Similarity=0.198 Sum_probs=35.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r 141 (494)
+.|.+-|..||||||....||..+++-+.+|+||++||-.
T Consensus 20 KwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAH 59 (323)
T KOG2825|consen 20 KWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAH 59 (323)
T ss_pred eEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCccc
Confidence 4466668889999999999999999999999999999844
No 469
>PRK06893 DNA replication initiation factor; Validated
Probab=97.50 E-value=0.00024 Score=69.58 Aligned_cols=35 Identities=11% Similarity=0.008 Sum_probs=31.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
.+.+.|++|+|||+++..++..+.+++.++..++.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 58899999999999999999999888888887776
No 470
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.49 E-value=0.00016 Score=67.50 Aligned_cols=30 Identities=37% Similarity=0.382 Sum_probs=26.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCceE
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPA 133 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~~~g~kVa 133 (494)
|+++|+||+||||++.+++.+|.+.|.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v~ 31 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLPVG 31 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGGEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCccc
Confidence 789999999999999999999988776664
No 471
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.49 E-value=0.0014 Score=67.86 Aligned_cols=38 Identities=24% Similarity=0.478 Sum_probs=34.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHH-hcCCceEEEEcccCc
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQ-KKGWKPALVCADTFR 141 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~-~~g~kVaiVs~D~~r 141 (494)
++|+|++||||||++..|+.+|. ..|++|++++.|-+-
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i 40 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII 40 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccc
Confidence 68999999999999999999998 579999999999755
No 472
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.48 E-value=0.00013 Score=63.35 Aligned_cols=32 Identities=34% Similarity=0.472 Sum_probs=25.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~ 139 (494)
+|+|+|+|||||||++..|+..+ | ..+++.|.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~---~--~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL---G--FPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---T--CEEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---C--CeEEEecc
Confidence 58999999999999999999765 4 44556655
No 473
>PRK05595 replicative DNA helicase; Provisional
Probab=97.48 E-value=0.013 Score=63.03 Aligned_cols=115 Identities=17% Similarity=0.198 Sum_probs=65.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH-hcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCC---ChHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ-KKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTES---DPVRIAVEGV 176 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~-~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~---dp~~i~~~~l 176 (494)
...+++.|+||+||||++..+|.+++ ++|++|++++.+.-...-...+ .+...+++........ ........+.
T Consensus 201 g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~R~--~a~~~~v~~~~~~~~~l~~~e~~~~~~~~ 278 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAYKL--LCSEANVDMLRLRTGNLEDKDWENIARAS 278 (444)
T ss_pred CcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHHHH--HHHhcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 45788899999999999999998866 5699999999975322222221 2333344433221111 1112233333
Q ss_pred HHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecC
Q 011076 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDS 223 (494)
Q Consensus 177 ~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa 223 (494)
..+. ...+.|-|+++.. -..+...++.+.....++ ++|+|.
T Consensus 279 ~~l~--~~~l~i~d~~~~t--~~~i~~~~r~~~~~~~~~--~vvIDy 319 (444)
T PRK05595 279 GPLA--AAKIFIDDTAGVS--VMEMRSKCRRLKIEHGID--MILIDY 319 (444)
T ss_pred HHHh--cCCEEEECCCCCC--HHHHHHHHHHHHHhcCCC--EEEEeH
Confidence 3333 3456677888864 223444444443333333 677775
No 474
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.48 E-value=0.00011 Score=72.76 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 011076 102 SVIMFVGLQGSGKTTTCTKYA 122 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA 122 (494)
.+++|+|++||||||++|+|.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~ 141 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALD 141 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999999
No 475
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.47 E-value=0.00092 Score=64.84 Aligned_cols=53 Identities=25% Similarity=0.325 Sum_probs=41.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKI 157 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i 157 (494)
..++++.|+||+|||+++..++....++|++|..++.+- ..+++...+...+.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~----~~~~l~~~~~~~~~ 68 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE----REERILGYAKSKGW 68 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC----CHHHHHHHHHHcCC
Confidence 457899999999999999999988878899999999965 23444444444443
No 476
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.46 E-value=0.00014 Score=70.80 Aligned_cols=39 Identities=23% Similarity=0.253 Sum_probs=34.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh--cCCceEEEEcccCc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQK--KGWKPALVCADTFR 141 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~--~g~kVaiVs~D~~r 141 (494)
+|+++|++||||||++..|+..|.. .+.+|.+|+.|-|-
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 4789999999999999999999875 56789999999763
No 477
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=97.45 E-value=0.0048 Score=60.43 Aligned_cols=146 Identities=16% Similarity=0.150 Sum_probs=76.6
Q ss_pred EEEEEcC-CCCcHHHHHHHHHHHHHhcCCceEEEEcccCc---------chhHHHHHhhhhcc----Cc-ceeccCC---
Q 011076 103 VIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADTFR---------AGAFDQLKQNATKA----KI-PFYGSYT--- 164 (494)
Q Consensus 103 vI~lvG~-~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r---------~~a~~qLk~~~~~~----~i-~~~~~~~--- 164 (494)
.+.++|. +|+|||+++..|+.+|.++|++|...-+=..+ ......+....... .+ |+.....
T Consensus 4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~KPi~~g~~~~~~~~~~~D~~~l~~~~~~~~~~~~~~p~~~~~~~a~ 83 (231)
T PRK12374 4 RFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKPVAKGSKETPEGLRNKDALVLQSVSSIELPYEAVNPIALSEEESS 83 (231)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECccccCCccCCCCCchHHHHHHHHhcCCCCCHHhccCeecCCCcCh
Confidence 3777775 69999999999999999999988765431111 11122222211110 00 1000000
Q ss_pred --CCChH--HHHHHHHHHHhccCCcEEEEeCCCCCchh---HHHHHHHHHHHHhcCCCEEEEEecCCCccc--HHHHHHH
Q 011076 165 --ESDPV--RIAVEGVETFKKENCDLIIVDTSGRHKQE---AALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQA 235 (494)
Q Consensus 165 --~~dp~--~i~~~~l~~~~~~~~dvIIIDTaG~~~~~---~~l~~el~~i~~~~~~d~vllVvDa~~g~~--~~~~~~~ 235 (494)
...+. +-..+.++.+ ...+|+||||.+|..... ...... +.... .-.+++|++...|.- +.-..+.
T Consensus 84 ~~~~~~i~~~~i~~~~~~l-~~~~D~VlVEGaGgl~~p~~~~~~~~d---~~~~~-~~pvilV~~~~lg~in~~lLt~~~ 158 (231)
T PRK12374 84 VAHSCPINYTLMSNGLANL-SEKVDHVVVEGTGGWRSLMNDLRPLSE---WVVQE-QLPVLMVVGIQEGCINHALLTAQA 158 (231)
T ss_pred HHcCCcCCHHHHHHHHHHH-HhhCCEEEEECCCCcceeccCcccHHH---HHHHh-CCCEEEEECCCcChHHHHHHHHHH
Confidence 11111 2233444443 368999999999932111 011111 11111 334777887766641 1112333
Q ss_pred Hh-ccCCeeEEEEeCccCC
Q 011076 236 FK-QSVSVGAVIVTKMDGH 253 (494)
Q Consensus 236 f~-~~~~i~~vVltK~D~~ 253 (494)
+. +.+++.++|+|+++..
T Consensus 159 l~~~~~~~~gvV~N~~~~~ 177 (231)
T PRK12374 159 IANDGLPLIGWVANRINPG 177 (231)
T ss_pred HHhCCCcEEEEEEeCccCc
Confidence 33 3567889999999864
No 478
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00092 Score=66.95 Aligned_cols=128 Identities=21% Similarity=0.198 Sum_probs=75.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
-.|..+|.-.-|||||.+++...|++++...+ .+.|.-+. .+.-+..+|.+.....+ ...
T Consensus 13 VNigtiGHvdHGKTTLtaAit~~la~~~~~~~-~~y~~id~------aPeEk~rGITIntahve-------------yet 72 (394)
T COG0050 13 VNVGTIGHVDHGKTTLTAAITTVLAKKGGAEA-KAYDQIDN------APEEKARGITINTAHVE-------------YET 72 (394)
T ss_pred eEEEEeccccCchhhHHHHHHHHHHhhccccc-cchhhhcc------CchHhhcCceeccceeE-------------Eec
Confidence 34788999999999999999999998763222 11111111 11122234433221111 111
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH--HH-HHHHHhccCCeeEEEEeCccCCCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FD-QAQAFKQSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~--~~-~~~~f~~~~~i~~vVltK~D~~~~ 255 (494)
..-.|-.||+||... ..+.| |..+.+.|..++|+.|..|+-. .+ .+.+-.-.+|...+++||+|....
T Consensus 73 ~~rhyahVDcPGHaD----YvKNM--ItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd 143 (394)
T COG0050 73 ANRHYAHVDCPGHAD----YVKNM--ITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDD 143 (394)
T ss_pred CCceEEeccCCChHH----HHHHH--hhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCc
Confidence 345688999999863 33333 3445677999999999876432 22 222212224545788999999763
No 479
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.44 E-value=0.00017 Score=68.55 Aligned_cols=39 Identities=33% Similarity=0.476 Sum_probs=34.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCc----eEEEEcccCc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWK----PALVCADTFR 141 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~k----VaiVs~D~~r 141 (494)
+|.+.|++||||||++..|+..|.+.|.. +.+++.|.|.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~ 43 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFY 43 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGB
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccc
Confidence 68999999999999999999999988876 7788887764
No 480
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=97.44 E-value=0.0029 Score=68.22 Aligned_cols=138 Identities=15% Similarity=0.192 Sum_probs=74.8
Q ss_pred EEEEcCC-CCcHHHHHHHHHHHHHhcCCceEEEEccc-CcchhHHHHHhhhhcc--CcceeccCCCCChHHHHHHHHHHH
Q 011076 104 IMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADT-FRAGAFDQLKQNATKA--KIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 104 I~lvG~~-GvGKTTl~~kLA~~l~~~g~kVaiVs~D~-~r~~a~~qLk~~~~~~--~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
++|+|.. ||||||++..|+.+|+++|++|....+-+ +....+. ...+.+. ++..+. .+ .+.+.+.+..+
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~d~~D~~~~--~~~~g~~~~~ld~~~----~~-~~~i~~~~~~~ 74 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGPDYIDPMFH--TQATGRPSRNLDSFF----MS-EAQIQECFHRH 74 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCCCCCCHHHH--HHHhCCchhhCCccc----CC-HHHHHHHHHHh
Confidence 6677775 99999999999999999999988766521 1101111 1111110 111010 11 23334444443
Q ss_pred hccCCcEEEEeCCCCCc-----h-hHHHHHHHHHHHHhcCCCEEEEEecCCCc-ccHHHH---HHHHhccCCeeEEEEeC
Q 011076 180 KKENCDLIIVDTSGRHK-----Q-EAALFEEMRQVSEATNPDLVIFVMDSSIG-QAAFDQ---AQAFKQSVSVGAVIVTK 249 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~-----~-~~~l~~el~~i~~~~~~d~vllVvDa~~g-~~~~~~---~~~f~~~~~i~~vVltK 249 (494)
..++|++||+-+|-.. . +.....+ +....+ --+++|+|+..- ...... ...+...+++.++|+|+
T Consensus 75 -~~~~D~viVEGagGl~~g~~p~~~~~s~ad---lAk~l~-~pVILV~~~~~~~~t~~al~~~~~~~~~~i~i~GvIlN~ 149 (449)
T TIGR00379 75 -SKGTDYSIIEGVRGLYDGISAITDYGSTAS---VAKALD-APIVLVMNCQRLSRSAAAIVLGYRSFDPGVKLKGVILNR 149 (449)
T ss_pred -cccCCEEEEecCCccccCCCCCCCCccHHH---HHHHhC-CCEEEEECCchHHHHHHHHHHHHHhhCCCCCEEEEEEEC
Confidence 2478999999875321 1 1111222 233332 357888887631 111121 22344457788999999
Q ss_pred ccCC
Q 011076 250 MDGH 253 (494)
Q Consensus 250 ~D~~ 253 (494)
++..
T Consensus 150 v~~~ 153 (449)
T TIGR00379 150 VGSE 153 (449)
T ss_pred CCCH
Confidence 9853
No 481
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=97.44 E-value=0.00036 Score=73.15 Aligned_cols=41 Identities=27% Similarity=0.399 Sum_probs=37.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~ 140 (494)
++.+|.|+|.+||||||++.+|...|.++|++|++|-.|..
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h 244 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHSHH 244 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEECCc
Confidence 35689999999999999999999999999999999998653
No 482
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.43 E-value=0.00091 Score=62.84 Aligned_cols=43 Identities=30% Similarity=0.468 Sum_probs=38.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~ 142 (494)
++.+|.++|++|+||||++..|+..+...|..+.+++.|..|.
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~ 59 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRH 59 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHh
Confidence 3578999999999999999999999988888888899887664
No 483
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.41 E-value=0.00072 Score=65.77 Aligned_cols=39 Identities=28% Similarity=0.294 Sum_probs=31.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhc------CCceEEEEccc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK------GWKPALVCADT 139 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~------g~kVaiVs~D~ 139 (494)
..++.++|+||+||||++..++...... +.+|..++.+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 4579999999999999999999765433 37888888854
No 484
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.41 E-value=0.00015 Score=73.18 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAY 123 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~ 123 (494)
.++.+|+|.+||||||++|+|+-
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCc
Confidence 45799999999999999999993
No 485
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.41 E-value=0.0019 Score=67.19 Aligned_cols=112 Identities=19% Similarity=0.249 Sum_probs=59.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhc-CCceEEEEcccCcchhHHHHHhhhhccCcce-eccCCCCChHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQNATKAKIPF-YGSYTESDPVRIAVEGVET 178 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~-g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~-~~~~~~~dp~~i~~~~l~~ 178 (494)
...|+|+|++|||||||++.|+.++.+. +.++..+ .|+. +..... ...+ .......+.. -..+++..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti-Edp~-----E~~~~~----~~~~i~q~evg~~~~-~~~~~l~~ 190 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI-EDPI-----EYVHRN----KRSLINQREVGLDTL-SFANALRA 190 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE-cCCh-----hhhccC----ccceEEccccCCCCc-CHHHHHHH
Confidence 4679999999999999999999887654 3344433 3331 111000 0000 0000011111 12444555
Q ss_pred HhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH
Q 011076 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA 229 (494)
Q Consensus 179 ~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~ 229 (494)
+...++|+|++|-+- +.+..... +..+..-..++..+.+.....+
T Consensus 191 ~lr~~pd~i~vgEir----d~~~~~~~--l~aa~tGh~v~~T~Ha~~~~~~ 235 (343)
T TIGR01420 191 ALREDPDVILIGEMR----DLETVELA--LTAAETGHLVFGTLHTNSAAQT 235 (343)
T ss_pred hhccCCCEEEEeCCC----CHHHHHHH--HHHHHcCCcEEEEEcCCCHHHH
Confidence 556799999999984 22222221 2223334557777777544333
No 486
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.40 E-value=0.00023 Score=56.34 Aligned_cols=33 Identities=30% Similarity=0.355 Sum_probs=28.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
+|+++|++||||||+++.|+..| .+.++.+++.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 47899999999999999999988 5677777764
No 487
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.40 E-value=0.00044 Score=63.00 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=26.9
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHH
Q 011076 77 QAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYA 122 (494)
Q Consensus 77 ~~v~~eL~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA 122 (494)
+.+.+.+.+++.. .+....++++|.+|+||||+++.|.
T Consensus 85 ~~L~~~l~~~~~~--------~~~~~~~~~ig~~~~Gkssl~~~l~ 122 (156)
T cd01859 85 KILRRTIKELAKI--------DGKEGKVGVVGYPNVGKSSIINALK 122 (156)
T ss_pred HHHHHHHHHHHhh--------cCCCcEEEEECCCCCCHHHHHHHHh
Confidence 4455555555431 1223457999999999999999998
No 488
>PRK08506 replicative DNA helicase; Provisional
Probab=97.40 E-value=0.021 Score=62.01 Aligned_cols=117 Identities=16% Similarity=0.217 Sum_probs=68.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCC-Ch--HHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTES-DP--VRIAVEGVE 177 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~-dp--~~i~~~~l~ 177 (494)
...+++.|+||+||||++..+|..+.++|++|++++.+.-...-...+ .+...++++....... +. ......+..
T Consensus 192 G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~Rl--la~~s~v~~~~i~~~~l~~~e~~~~~~a~~ 269 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLMLRM--LSAKTSIPLQNLRTGDLDDDEWERLSDACD 269 (472)
T ss_pred CceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHHHH--HHHhcCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999988899999999976433222222 2223344433221111 11 112334444
Q ss_pred HHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCC
Q 011076 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS 224 (494)
Q Consensus 178 ~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~ 224 (494)
.+. +..+.|.|+++.. -..+...++.+... .++.-++|+|.-
T Consensus 270 ~l~--~~~l~I~d~~~~t--i~~I~~~~r~l~~~-~~~~~lvvIDyL 311 (472)
T PRK08506 270 ELS--KKKLFVYDSGYVN--IHQVRAQLRKLKSQ-HPEIGLAVIDYL 311 (472)
T ss_pred HHH--cCCeEEECCCCCC--HHHHHHHHHHHHHh-CCCCCEEEEcCh
Confidence 443 3467778887653 22333333333322 234557778863
No 489
>PRK13695 putative NTPase; Provisional
Probab=97.40 E-value=0.0064 Score=56.58 Aligned_cols=31 Identities=35% Similarity=0.415 Sum_probs=27.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceE
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPA 133 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVa 133 (494)
.|+|+|.+|+||||++..++..+...|.++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~ 32 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVG 32 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4889999999999999999988887787754
No 490
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.39 E-value=0.0019 Score=66.27 Aligned_cols=44 Identities=25% Similarity=0.201 Sum_probs=33.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH------hcCCceEEEEcc-cCcchh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ------KKGWKPALVCAD-TFRAGA 144 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~------~~g~kVaiVs~D-~~r~~a 144 (494)
..++-++|+||+|||++|..++...+ ..+.+|+-||+. +|+|.-
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eR 146 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDR 146 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHH
Confidence 35788999999999999999886543 135688888875 466643
No 491
>PRK08181 transposase; Validated
Probab=97.39 E-value=0.00033 Score=70.33 Aligned_cols=77 Identities=17% Similarity=0.339 Sum_probs=51.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.++|+|++|+|||.++..++..+.++|++|..++.+ ..+++++.... .... ...+..+ .
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~----~L~~~l~~a~~-----------~~~~----~~~l~~l--~ 166 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTT----DLVQKLQVARR-----------ELQL----ESAIAKL--D 166 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHH----HHHHHHHHHHh-----------CCcH----HHHHHHH--h
Confidence 499999999999999999999999999999888762 12333322100 0000 0112222 3
Q ss_pred CCcEEEEeCCCCCchhHH
Q 011076 183 NCDLIIVDTSGRHKQEAA 200 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~ 200 (494)
.+|++|||=.|....+..
T Consensus 167 ~~dLLIIDDlg~~~~~~~ 184 (269)
T PRK08181 167 KFDLLILDDLAYVTKDQA 184 (269)
T ss_pred cCCEEEEeccccccCCHH
Confidence 789999999998765443
No 492
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.38 E-value=0.00055 Score=69.09 Aligned_cols=58 Identities=24% Similarity=0.257 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 71 KRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 71 ~~~~i~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
+--.+...+..+|....+... ....++++|-||+||||++|++...-.++. +.+.|-+
T Consensus 121 ~l~~il~~~~~~l~r~irt~~--------~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~-k~a~vG~ 178 (335)
T KOG2485|consen 121 PLLKILTILSEELVRFIRTLN--------SEYNVMVVGVPNVGKSSLINALRNVHLRKK-KAARVGA 178 (335)
T ss_pred cHHHHHHHHHHHHHHhhcccC--------CceeEEEEcCCCCChHHHHHHHHHHHhhhc-cceeccC
Confidence 333445555566666555321 124599999999999999998887655544 7776666
No 493
>PRK05748 replicative DNA helicase; Provisional
Probab=97.37 E-value=0.023 Score=61.17 Aligned_cols=117 Identities=14% Similarity=0.107 Sum_probs=66.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH-hcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCC-CChH--HHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ-KKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE-SDPV--RIAVEGV 176 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~-~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~-~dp~--~i~~~~l 176 (494)
...+++.|+||+||||++..++...+ +.|++|++++.+.-...-...+- +...+++....... -... .....++
T Consensus 203 G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~l--~~~~~v~~~~i~~~~l~~~e~~~~~~a~ 280 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRML--CAEGNIDAQRLRTGQLTDDDWPKLTIAM 280 (448)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHH--HHhcCCCHHHhhcCCCCHHHHHHHHHHH
Confidence 45789999999999999999999877 45999999999764332222221 12223332211111 1111 1233444
Q ss_pred HHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCC
Q 011076 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS 224 (494)
Q Consensus 177 ~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~ 224 (494)
..+. +..+.|-|+|+... ..+...+..+.... +..-++|+|..
T Consensus 281 ~~l~--~~~~~i~d~~~~ti--~~i~~~~r~~~~~~-~~~~~vvIDyL 323 (448)
T PRK05748 281 GSLS--DAPIYIDDTPGIKV--TEIRARCRRLAQEH-GGLGLILIDYL 323 (448)
T ss_pred HHHh--cCCEEEECCCCCCH--HHHHHHHHHHHHhc-CCCCEEEEccc
Confidence 4443 45667778887542 23444444443332 23347778863
No 494
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.37 E-value=0.00065 Score=59.22 Aligned_cols=68 Identities=22% Similarity=0.252 Sum_probs=42.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhccC
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~~ 183 (494)
|++.|+||+||||++..+|.++ +..+.-+++.... .....+........+..++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~--------------------~~~~~~~~~~i~~~~~~~~~~~ 57 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELI--------------------SSYAGDSEQKIRDFFKKAKKSA 57 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHH--------------------TSSTTHHHHHHHHHHHHHHHTS
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccccccc--------------------cccccccccccccccccccccc
Confidence 6899999999999999999876 4555556652210 0011222333444455554444
Q ss_pred -CcEEEEeCCCC
Q 011076 184 -CDLIIVDTSGR 194 (494)
Q Consensus 184 -~dvIIIDTaG~ 194 (494)
..+++||-...
T Consensus 58 ~~~vl~iDe~d~ 69 (132)
T PF00004_consen 58 KPCVLFIDEIDK 69 (132)
T ss_dssp TSEEEEEETGGG
T ss_pred cceeeeeccchh
Confidence 67888886554
No 495
>PRK08727 hypothetical protein; Validated
Probab=97.36 E-value=0.0015 Score=64.05 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=32.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
.+.+.|++|+|||+++..++..+.++|++|..++.
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~ 77 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL 77 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH
Confidence 49999999999999999999999988999888876
No 496
>PTZ00035 Rad51 protein; Provisional
Probab=97.36 E-value=0.0014 Score=67.89 Aligned_cols=48 Identities=25% Similarity=0.267 Sum_probs=34.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHh------cCCceEEEEcc-cCcchhHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK------KGWKPALVCAD-TFRAGAFDQL 148 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~------~g~kVaiVs~D-~~r~~a~~qL 148 (494)
..++.++|++|+||||++..++..... .+.+|+.|+.. +|++.-+.++
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~i 172 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQI 172 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHH
Confidence 457899999999999999999866552 35577777764 4666544333
No 497
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.36 E-value=0.00041 Score=65.39 Aligned_cols=78 Identities=24% Similarity=0.362 Sum_probs=49.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
.-++|.|++|+|||.++..++..+.++|++|..++.+ .-++.++.. +. ... ..+.+..+
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~----~L~~~l~~~--------~~---~~~----~~~~~~~l-- 106 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITAS----DLLDELKQS--------RS---DGS----YEELLKRL-- 106 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHH----HHHHHHHCC--------HC---CTT----HCHHHHHH--
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecC----ceecccccc--------cc---ccc----hhhhcCcc--
Confidence 3599999999999999999999999999999999872 123333321 00 000 11123333
Q ss_pred cCCcEEEEeCCCCCchhHH
Q 011076 182 ENCDLIIVDTSGRHKQEAA 200 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~ 200 (494)
..+|++|+|=-|....++.
T Consensus 107 ~~~dlLilDDlG~~~~~~~ 125 (178)
T PF01695_consen 107 KRVDLLILDDLGYEPLSEW 125 (178)
T ss_dssp HTSSCEEEETCTSS---HH
T ss_pred ccccEecccccceeeeccc
Confidence 3689999999998765443
No 498
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.36 E-value=0.00021 Score=67.98 Aligned_cols=37 Identities=27% Similarity=0.322 Sum_probs=32.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r 141 (494)
+|+++|++||||||+++.|+..+ .+.++.+++.|.|-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccc
Confidence 48999999999999999999887 46689999999764
No 499
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.36 E-value=0.00073 Score=68.34 Aligned_cols=38 Identities=34% Similarity=0.480 Sum_probs=31.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~ 142 (494)
+.+|+++|+|||||||++..|+..+. ....++.|.+|.
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~~r~ 39 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDDLRQ 39 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccHHHH
Confidence 35789999999999999999996552 567888888764
No 500
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.36 E-value=0.00074 Score=69.80 Aligned_cols=90 Identities=23% Similarity=0.296 Sum_probs=57.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..++|.|++|+|||+++.++|..+..+|++|..++++. .++.++... +. .. .+. ...+..+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~----l~~~l~~~~-------~~-~~-~~~----~~~~~~l-- 244 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADE----LIEILREIR-------FN-ND-KEL----EEVYDLL-- 244 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHH----HHHHHHHHH-------hc-cc-hhH----HHHHHHh--
Confidence 34999999999999999999999999999999888732 123332210 00 00 000 0012222
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHH
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSE 210 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~ 210 (494)
..+|++|||--|.....+....++-.+..
T Consensus 245 ~~~DLLIIDDlG~e~~t~~~~~~Lf~iin 273 (329)
T PRK06835 245 INCDLLIIDDLGTEKITEFSKSELFNLIN 273 (329)
T ss_pred ccCCEEEEeccCCCCCCHHHHHHHHHHHH
Confidence 37899999999987655444444444433
Done!