Query 011076
Match_columns 494
No_of_seqs 520 out of 3912
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 20:18:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011076.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011076hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dm5_A SRP54, signal recogniti 100.0 1.8E-96 6E-101 775.9 43.9 436 1-447 1-438 (443)
2 2j37_W Signal recognition part 100.0 3.6E-94 1.2E-98 771.7 23.9 480 1-483 1-490 (504)
3 3kl4_A SRP54, signal recogniti 100.0 1.5E-90 5E-95 730.7 37.2 423 8-433 4-433 (433)
4 2xxa_A Signal recognition part 100.0 5E-84 1.7E-88 683.3 41.6 430 2-434 1-432 (433)
5 2ffh_A Protein (FFH); SRP54, s 100.0 3.2E-83 1.1E-87 673.9 44.6 418 2-434 1-418 (425)
6 2v3c_C SRP54, signal recogniti 100.0 1.9E-81 6.5E-86 663.4 30.0 425 3-433 1-427 (432)
7 1j8m_F SRP54, signal recogniti 100.0 4.3E-46 1.5E-50 375.7 32.2 293 4-297 1-296 (297)
8 3e70_C DPA, signal recognition 100.0 2.3E-43 7.8E-48 360.3 28.8 296 2-298 7-326 (328)
9 1ls1_A Signal recognition part 100.0 5.7E-42 2E-46 345.3 32.6 295 2-298 1-295 (295)
10 1zu4_A FTSY; GTPase, signal re 100.0 1E-41 3.6E-46 347.0 29.8 287 3-300 11-313 (320)
11 1vma_A Cell division protein F 100.0 1.3E-41 4.6E-46 344.1 29.9 271 8-296 28-305 (306)
12 2og2_A Putative signal recogni 100.0 4.1E-39 1.4E-43 332.1 31.1 289 1-296 55-359 (359)
13 1rj9_A FTSY, signal recognitio 100.0 1.7E-39 5.8E-44 328.5 23.5 283 2-296 3-303 (304)
14 2yhs_A FTSY, cell division pro 100.0 4.2E-39 1.4E-43 342.1 27.1 277 14-298 214-496 (503)
15 3b9q_A Chloroplast SRP recepto 100.0 9.3E-37 3.2E-41 308.2 30.0 284 5-296 9-302 (302)
16 2jqe_A SRP54, signal recogniti 100.0 3.8E-38 1.3E-42 272.8 5.3 112 320-434 2-114 (119)
17 1hq1_A Signal recognition part 100.0 2.6E-37 8.9E-42 261.9 6.9 105 327-434 1-105 (105)
18 1mfq_C SRP54, signal recogniti 100.0 1.5E-36 5.3E-41 265.0 7.7 110 324-434 11-124 (129)
19 1qb2_A SRP54, human signal rec 100.0 8.1E-36 2.8E-40 254.6 6.9 105 327-432 1-109 (109)
20 2px0_A Flagellar biosynthesis 100.0 1.4E-33 4.9E-38 284.1 23.8 259 24-296 34-296 (296)
21 1dul_A Signal recognition part 99.9 6.5E-26 2.2E-30 177.2 6.7 64 367-432 6-69 (69)
22 3iev_A GTP-binding protein ERA 99.9 9.2E-24 3.1E-28 213.4 3.7 250 98-419 7-278 (308)
23 1wf3_A GTP-binding protein; GT 99.8 5.4E-22 1.8E-26 200.0 1.6 244 101-420 7-269 (301)
24 1ega_A Protein (GTP-binding pr 99.8 1.8E-20 6.2E-25 188.7 4.5 247 100-419 7-269 (301)
25 3p32_A Probable GTPase RV1496/ 99.7 8.4E-17 2.9E-21 165.5 11.7 191 100-312 78-283 (355)
26 3geh_A MNME, tRNA modification 99.6 3.2E-16 1.1E-20 166.7 4.7 232 8-312 148-383 (462)
27 3gee_A MNME, tRNA modification 99.6 1E-16 3.4E-21 171.2 -0.9 234 8-312 156-397 (476)
28 1yrb_A ATP(GTP)binding protein 99.6 1.4E-14 4.8E-19 141.0 11.5 206 100-311 13-255 (262)
29 2p67_A LAO/AO transport system 99.5 2.3E-14 7.8E-19 146.6 12.7 190 100-311 55-259 (341)
30 2www_A Methylmalonic aciduria 99.5 3.3E-14 1.1E-18 145.9 13.7 187 101-311 74-277 (349)
31 1xzp_A Probable tRNA modificat 99.5 3.5E-15 1.2E-19 159.4 -0.2 230 9-311 169-403 (482)
32 2wsm_A Hydrogenase expression/ 99.5 9.1E-14 3.1E-18 131.7 9.5 180 101-312 30-213 (221)
33 2qm8_A GTPase/ATPase; G protei 99.5 2.4E-13 8.3E-18 138.9 12.0 191 100-311 54-259 (337)
34 1jwy_B Dynamin A GTPase domain 99.4 1.5E-12 5E-17 130.4 14.6 118 183-313 130-262 (315)
35 2aka_B Dynamin-1; fusion prote 99.4 5.6E-12 1.9E-16 124.9 16.2 143 183-339 124-286 (299)
36 4dzz_A Plasmid partitioning pr 99.4 9.6E-12 3.3E-16 116.2 15.4 151 102-270 2-161 (206)
37 2hjg_A GTP-binding protein ENG 99.4 1.3E-12 4.3E-17 137.9 10.0 157 102-312 4-164 (436)
38 3cio_A ETK, tyrosine-protein k 99.3 3.6E-11 1.2E-15 120.7 19.5 148 100-255 103-281 (299)
39 4dhe_A Probable GTP-binding pr 99.3 2.1E-12 7.3E-17 122.0 9.4 166 101-314 29-212 (223)
40 3la6_A Tyrosine-protein kinase 99.3 5.7E-11 2E-15 118.5 20.1 148 100-255 91-269 (286)
41 3bfv_A CAPA1, CAPB2, membrane 99.3 3.5E-11 1.2E-15 119.1 17.7 147 100-254 81-258 (271)
42 3zvr_A Dynamin-1; hydrolase, D 99.3 2.2E-11 7.5E-16 135.9 16.8 145 183-339 149-311 (772)
43 2hjg_A GTP-binding protein ENG 99.3 7.3E-12 2.5E-16 132.0 11.8 187 77-311 153-347 (436)
44 3end_A Light-independent proto 99.3 3.7E-11 1.3E-15 120.2 16.3 163 99-271 39-241 (307)
45 3i8s_A Ferrous iron transport 99.3 7.1E-12 2.4E-16 124.1 10.8 158 101-314 3-170 (274)
46 2ph1_A Nucleotide-binding prot 99.3 4.7E-11 1.6E-15 116.9 16.2 146 101-252 18-194 (262)
47 1g3q_A MIND ATPase, cell divis 99.3 1E-10 3.5E-15 111.8 18.2 160 102-270 3-193 (237)
48 3ea0_A ATPase, para family; al 99.3 2.4E-11 8.2E-16 116.7 13.7 162 100-271 3-202 (245)
49 1mky_A Probable GTP-binding pr 99.3 6.1E-12 2.1E-16 132.7 10.3 157 103-312 3-165 (439)
50 4dcu_A GTP-binding protein ENG 99.3 4.9E-12 1.7E-16 134.1 9.5 158 101-312 23-184 (456)
51 4dcu_A GTP-binding protein ENG 99.3 1.8E-11 6.3E-16 129.6 13.4 185 77-311 173-367 (456)
52 1hyq_A MIND, cell division inh 99.3 4.3E-11 1.5E-15 116.6 14.7 160 102-270 3-192 (263)
53 3pqc_A Probable GTP-binding pr 99.3 2.4E-11 8.2E-16 111.5 11.9 158 101-312 23-193 (195)
54 3iby_A Ferrous iron transport 99.3 5.8E-12 2E-16 123.7 8.1 153 103-310 3-164 (256)
55 2dyk_A GTP-binding protein; GT 99.3 2.7E-11 9.3E-16 107.6 11.6 154 103-312 3-161 (161)
56 2hf9_A Probable hydrogenase ni 99.3 1.2E-11 4E-16 117.5 9.5 180 101-311 38-222 (226)
57 2e87_A Hypothetical protein PH 99.3 7.5E-11 2.6E-15 121.0 15.9 156 100-311 166-334 (357)
58 3k53_A Ferrous iron transport 99.2 2.6E-11 8.7E-16 119.5 11.6 154 102-311 4-164 (271)
59 3k9g_A PF-32 protein; ssgcid, 99.2 9.7E-11 3.3E-15 114.5 15.7 144 99-253 25-210 (267)
60 1cp2_A CP2, nitrogenase iron p 99.2 7.4E-11 2.5E-15 115.3 14.8 146 102-252 2-186 (269)
61 2x2e_A Dynamin-1; nitration, h 99.2 2.9E-11 1E-15 123.9 12.4 144 183-339 129-291 (353)
62 2qpt_A EH domain-containing pr 99.2 1.4E-12 4.8E-17 141.5 2.6 172 185-405 155-340 (550)
63 1svi_A GTP-binding protein YSX 99.2 1.4E-10 4.9E-15 106.8 15.7 158 101-311 23-193 (195)
64 2oze_A ORF delta'; para, walke 99.2 5E-11 1.7E-15 118.5 13.0 144 102-254 35-226 (298)
65 3q9l_A Septum site-determining 99.2 1.4E-10 4.9E-15 112.3 15.9 144 102-253 3-186 (260)
66 3kjh_A CO dehydrogenase/acetyl 99.2 3.2E-11 1.1E-15 115.7 11.1 140 104-252 3-195 (254)
67 3izq_1 HBS1P, elongation facto 99.2 2.5E-11 8.5E-16 133.2 11.2 205 10-254 41-319 (611)
68 2xtp_A GTPase IMAP family memb 99.2 1.1E-11 3.9E-16 120.7 7.5 172 100-312 21-207 (260)
69 2gj8_A MNME, tRNA modification 99.2 4.1E-11 1.4E-15 109.4 10.4 154 101-312 4-165 (172)
70 2afh_E Nitrogenase iron protei 99.2 5.3E-11 1.8E-15 118.0 11.5 146 102-252 3-189 (289)
71 2qu8_A Putative nucleolar GTP- 99.2 1.2E-10 4.1E-15 111.1 13.5 162 100-311 28-203 (228)
72 3a1s_A Iron(II) transport prot 99.2 2.4E-11 8.1E-16 119.4 8.5 155 101-311 5-165 (258)
73 1wcv_1 SOJ, segregation protei 99.2 9.9E-11 3.4E-15 114.2 11.5 145 100-255 5-184 (257)
74 1mky_A Probable GTP-binding pr 99.2 1.1E-10 3.7E-15 123.1 12.2 166 100-311 179-353 (439)
75 3cwq_A Para family chromosome 99.1 5.7E-10 2E-14 105.8 14.2 127 103-254 2-134 (209)
76 2wji_A Ferrous iron transport 99.1 8.1E-11 2.8E-15 106.3 7.4 154 102-311 4-163 (165)
77 2xj4_A MIPZ; replication, cell 99.1 1.3E-09 4.3E-14 108.2 16.2 115 101-224 4-136 (286)
78 1fzq_A ADP-ribosylation factor 99.1 7.4E-10 2.5E-14 101.6 13.2 153 101-312 16-177 (181)
79 3ug7_A Arsenical pump-driving 99.1 1.1E-09 3.7E-14 112.2 15.4 45 101-146 26-70 (349)
80 3lxw_A GTPase IMAP family memb 99.1 1.8E-10 6.1E-15 112.2 9.0 121 100-254 20-153 (247)
81 3zq6_A Putative arsenical pump 99.1 1.7E-09 5.7E-14 109.6 16.0 44 101-145 14-57 (324)
82 2qtf_A Protein HFLX, GTP-bindi 99.1 5.3E-10 1.8E-14 115.3 12.3 183 77-311 154-352 (364)
83 3b1v_A Ferrous iron uptake tra 99.1 1.3E-10 4.5E-15 115.1 7.1 155 101-312 3-163 (272)
84 2nzj_A GTP-binding protein REM 99.1 4.3E-10 1.5E-14 101.2 9.7 156 101-311 4-167 (175)
85 2wjg_A FEOB, ferrous iron tran 99.1 1.3E-10 4.5E-15 106.4 6.3 158 101-314 7-170 (188)
86 2h17_A ADP-ribosylation factor 99.1 7.8E-10 2.7E-14 101.1 11.3 153 100-310 20-180 (181)
87 1c1y_A RAS-related protein RAP 99.0 3.7E-10 1.2E-14 100.7 8.6 154 102-311 4-165 (167)
88 1u8z_A RAS-related protein RAL 99.0 3E-10 1E-14 101.0 7.9 154 101-311 4-165 (168)
89 3q85_A GTP-binding protein REM 99.0 4.3E-10 1.5E-14 100.8 8.8 153 103-311 4-165 (169)
90 2ce2_X GTPase HRAS; signaling 99.0 4.9E-10 1.7E-14 99.2 9.1 149 102-311 4-163 (166)
91 2j69_A Bacterial dynamin-like 99.0 6.1E-10 2.1E-14 124.0 11.8 85 32-139 17-101 (695)
92 3tr5_A RF-3, peptide chain rel 99.0 4.4E-10 1.5E-14 121.3 10.3 67 182-255 80-149 (528)
93 1f6b_A SAR1; gtpases, N-termin 99.0 4.4E-10 1.5E-14 104.9 8.9 161 101-311 25-197 (198)
94 3fwy_A Light-independent proto 99.0 3.2E-09 1.1E-13 107.3 15.4 163 99-271 46-248 (314)
95 4bas_A ADP-ribosylation factor 99.0 4.7E-10 1.6E-14 103.4 8.6 155 100-311 16-187 (199)
96 2a9k_A RAS-related protein RAL 99.0 4.8E-10 1.6E-14 101.8 8.5 154 101-311 18-179 (187)
97 3q72_A GTP-binding protein RAD 99.0 7.8E-10 2.7E-14 98.8 9.6 151 103-311 4-162 (166)
98 2efe_B Small GTP-binding prote 99.0 3.5E-10 1.2E-14 102.5 7.4 158 101-313 12-175 (181)
99 1zj6_A ADP-ribosylation factor 99.0 3.1E-09 1.1E-13 97.4 13.8 154 101-312 16-177 (187)
100 1r2q_A RAS-related protein RAB 99.0 3.8E-10 1.3E-14 100.7 7.4 157 101-312 6-168 (170)
101 2erx_A GTP-binding protein DI- 99.0 9E-10 3.1E-14 98.5 9.8 154 102-312 4-166 (172)
102 1z0f_A RAB14, member RAS oncog 99.0 4.8E-10 1.6E-14 101.1 8.1 156 101-311 15-176 (179)
103 1byi_A Dethiobiotin synthase; 99.0 2.3E-08 7.7E-13 94.7 19.9 165 102-271 2-200 (224)
104 1zd9_A ADP-ribosylation factor 99.0 1.9E-09 6.6E-14 99.2 12.0 154 101-312 22-184 (188)
105 2il1_A RAB12; G-protein, GDP, 99.0 6.9E-10 2.3E-14 102.7 8.9 157 101-311 26-188 (192)
106 2fg5_A RAB-22B, RAS-related pr 99.0 8.7E-10 3E-14 101.9 9.5 157 101-312 23-185 (192)
107 2y8e_A RAB-protein 6, GH09086P 99.0 2.9E-10 1E-14 102.5 6.0 155 102-312 15-176 (179)
108 2h5e_A Peptide chain release f 99.0 1E-09 3.6E-14 118.4 11.2 134 101-255 13-149 (529)
109 3iqw_A Tail-anchored protein t 99.0 3.3E-09 1.1E-13 108.1 14.2 40 101-140 16-55 (334)
110 1r8s_A ADP-ribosylation factor 99.0 4.3E-09 1.5E-13 93.7 13.3 152 103-312 2-161 (164)
111 2lkc_A Translation initiation 99.0 4.7E-10 1.6E-14 101.4 7.0 158 101-311 8-169 (178)
112 1upt_A ARL1, ADP-ribosylation 99.0 8.9E-10 3.1E-14 98.7 8.7 155 101-312 7-168 (171)
113 1ky3_A GTP-binding protein YPT 99.0 2.9E-10 1E-14 102.8 5.5 157 101-311 8-176 (182)
114 3cph_A RAS-related protein SEC 99.0 5.1E-10 1.8E-14 104.5 7.3 154 101-311 20-180 (213)
115 3pg5_A Uncharacterized protein 99.0 3.3E-09 1.1E-13 109.0 14.1 43 102-144 2-45 (361)
116 3tw8_B RAS-related protein RAB 99.0 1.7E-10 6E-15 104.2 3.9 152 101-311 9-169 (181)
117 1m2o_B GTP-binding protein SAR 99.0 1E-09 3.4E-14 101.7 9.1 159 101-310 23-189 (190)
118 3fkq_A NTRC-like two-domain pr 99.0 4.1E-09 1.4E-13 108.7 14.6 122 96-225 138-293 (373)
119 3clv_A RAB5 protein, putative; 99.0 1.5E-09 5E-14 99.6 10.0 106 184-311 93-202 (208)
120 1z0j_A RAB-22, RAS-related pro 99.0 1.3E-09 4.5E-14 97.3 9.4 156 102-312 7-168 (170)
121 2woj_A ATPase GET3; tail-ancho 99.0 4E-09 1.4E-13 108.3 14.2 42 102-144 19-62 (354)
122 1moz_A ARL1, ADP-ribosylation 99.0 3.8E-10 1.3E-14 102.6 5.7 153 101-311 18-178 (183)
123 1z2a_A RAS-related protein RAB 99.0 3.4E-10 1.2E-14 101.0 5.2 155 101-311 5-165 (168)
124 2b6h_A ADP-ribosylation factor 99.0 5.5E-09 1.9E-13 96.8 13.4 155 100-312 28-190 (192)
125 2a5j_A RAS-related protein RAB 99.0 5.6E-10 1.9E-14 103.0 6.6 155 101-311 21-182 (191)
126 3tkl_A RAS-related protein RAB 99.0 7.9E-10 2.7E-14 101.6 7.5 152 101-311 16-177 (196)
127 4dsu_A GTPase KRAS, isoform 2B 99.0 1.4E-09 4.8E-14 99.0 9.0 150 101-311 4-164 (189)
128 3t1o_A Gliding protein MGLA; G 99.0 2.2E-09 7.5E-14 98.3 10.3 106 183-311 73-190 (198)
129 2woo_A ATPase GET3; tail-ancho 99.0 7.9E-09 2.7E-13 104.9 15.4 40 101-140 19-58 (329)
130 3qq5_A Small GTP-binding prote 99.0 6.3E-10 2.2E-14 116.9 7.4 161 100-313 33-196 (423)
131 2hxs_A RAB-26, RAS-related pro 99.0 1.6E-09 5.6E-14 97.8 9.2 157 101-312 6-172 (178)
132 2bov_A RAla, RAS-related prote 99.0 1.2E-09 4E-14 101.3 8.4 154 101-311 14-175 (206)
133 1kao_A RAP2A; GTP-binding prot 99.0 6E-10 2E-14 99.0 6.2 149 102-311 4-164 (167)
134 1zbd_A Rabphilin-3A; G protein 99.0 9.1E-10 3.1E-14 102.3 7.7 155 101-311 8-169 (203)
135 1wms_A RAB-9, RAB9, RAS-relate 99.0 1.3E-09 4.5E-14 98.3 8.3 155 101-311 7-172 (177)
136 3bc1_A RAS-related protein RAB 98.9 9.3E-10 3.2E-14 100.4 7.3 107 183-311 69-183 (195)
137 1ksh_A ARF-like protein 2; sma 98.9 9.6E-10 3.3E-14 100.5 7.4 155 100-312 17-179 (186)
138 2h57_A ADP-ribosylation factor 98.9 1.5E-09 5.1E-14 99.8 8.7 156 100-312 20-186 (190)
139 1ihu_A Arsenical pump-driving 98.9 5.4E-09 1.8E-13 114.1 14.4 48 100-148 7-54 (589)
140 2oil_A CATX-8, RAS-related pro 98.9 4.9E-10 1.7E-14 103.2 5.3 156 101-311 25-186 (193)
141 2gf0_A GTP-binding protein DI- 98.9 2.1E-09 7.1E-14 99.1 9.5 155 101-313 8-171 (199)
142 1vg8_A RAS-related protein RAB 98.9 3.1E-10 1.1E-14 105.4 4.0 155 101-311 8-173 (207)
143 3con_A GTPase NRAS; structural 98.9 1.1E-09 3.7E-14 100.5 7.5 153 101-311 21-181 (190)
144 1g16_A RAS-related protein SEC 98.9 9.9E-10 3.4E-14 98.1 7.0 153 102-311 4-163 (170)
145 2p5s_A RAS and EF-hand domain 98.9 2.9E-09 9.8E-14 98.9 10.0 156 100-311 27-195 (199)
146 1ek0_A Protein (GTP-binding pr 98.9 1.5E-09 5E-14 96.9 7.7 156 102-312 4-168 (170)
147 2gf9_A RAS-related protein RAB 98.9 4.3E-10 1.5E-14 103.4 3.9 155 101-311 22-183 (189)
148 2cxx_A Probable GTP-binding pr 98.9 3.8E-09 1.3E-13 96.4 10.1 157 103-312 3-183 (190)
149 3sjy_A Translation initiation 98.9 5.2E-09 1.8E-13 109.0 12.4 113 184-313 75-192 (403)
150 3j2k_7 ERF3, eukaryotic polype 98.9 3.7E-09 1.3E-13 111.5 11.4 66 182-253 93-168 (439)
151 2hup_A RAS-related protein RAB 98.9 3.7E-09 1.3E-13 98.7 9.8 157 101-311 29-191 (201)
152 2g6b_A RAS-related protein RAB 98.9 1.3E-09 4.5E-14 98.6 6.4 156 101-311 10-172 (180)
153 3t5d_A Septin-7; GTP-binding p 98.9 3E-09 1E-13 104.9 9.4 172 99-312 6-203 (274)
154 2bcg_Y Protein YP2, GTP-bindin 98.9 7.4E-10 2.5E-14 103.3 4.5 156 101-311 8-169 (206)
155 3dz8_A RAS-related protein RAB 98.9 7.2E-10 2.5E-14 102.2 4.2 156 101-311 23-184 (191)
156 3ez9_A Para; DNA binding, wing 98.9 3.5E-09 1.2E-13 110.2 9.8 43 99-141 109-158 (403)
157 3ez2_A Plasmid partition prote 98.9 6.2E-09 2.1E-13 108.0 11.6 44 98-141 105-155 (398)
158 2fh5_B SR-beta, signal recogni 98.9 8.5E-09 2.9E-13 96.6 11.5 114 101-255 7-130 (214)
159 2xex_A Elongation factor G; GT 98.9 1.8E-08 6.1E-13 112.2 15.9 131 100-255 9-142 (693)
160 1x3s_A RAS-related protein RAB 98.9 1.5E-09 5E-14 99.6 5.8 153 101-312 15-177 (195)
161 2bme_A RAB4A, RAS-related prot 98.9 1.5E-09 5.1E-14 98.9 5.8 155 101-311 10-171 (186)
162 1h65_A Chloroplast outer envel 98.9 4.1E-09 1.4E-13 103.6 9.3 120 101-255 39-169 (270)
163 3dpu_A RAB family protein; roc 98.9 9.1E-09 3.1E-13 111.0 12.8 163 101-312 41-207 (535)
164 4djt_A GTP-binding nuclear pro 98.9 1.6E-09 5.6E-14 101.8 6.1 156 101-312 11-174 (218)
165 2j1l_A RHO-related GTP-binding 98.9 2.1E-09 7E-14 101.4 6.8 167 101-311 34-207 (214)
166 4gzl_A RAS-related C3 botulinu 98.9 1.2E-09 4.1E-14 102.3 5.0 168 100-311 29-203 (204)
167 2x77_A ADP-ribosylation factor 98.9 1.5E-09 5.1E-14 99.6 5.4 155 101-312 22-183 (189)
168 1z06_A RAS-related protein RAB 98.9 1.9E-09 6.4E-14 99.1 6.1 156 101-311 20-186 (189)
169 3gj0_A GTP-binding nuclear pro 98.9 2.1E-09 7.3E-14 101.5 6.6 151 101-311 15-173 (221)
170 1z08_A RAS-related protein RAB 98.9 1.2E-09 4.2E-14 97.7 4.6 155 101-311 6-167 (170)
171 2o52_A RAS-related protein RAB 98.9 2.1E-09 7.2E-14 100.2 6.3 155 101-311 25-186 (200)
172 2fn4_A P23, RAS-related protei 98.9 3.2E-09 1.1E-13 95.8 7.2 154 101-311 9-170 (181)
173 1lnz_A SPO0B-associated GTP-bi 98.9 2.5E-09 8.7E-14 109.3 7.2 155 103-313 160-330 (342)
174 2ged_A SR-beta, signal recogni 98.9 7.3E-09 2.5E-13 95.2 9.5 131 77-255 27-171 (193)
175 2fv8_A H6, RHO-related GTP-bin 98.8 2.5E-09 8.4E-14 100.2 6.4 166 101-311 25-198 (207)
176 3cpj_B GTP-binding protein YPT 98.8 1.6E-09 5.3E-14 102.8 5.0 157 101-312 13-175 (223)
177 2f7s_A C25KG, RAS-related prot 98.8 4.4E-09 1.5E-13 98.8 8.0 108 183-311 83-197 (217)
178 2yc2_C IFT27, small RAB-relate 98.8 1.6E-09 5.3E-14 100.4 4.9 158 101-311 20-190 (208)
179 4a9a_A Ribosome-interacting GT 98.8 4.8E-09 1.6E-13 108.4 8.9 116 101-252 72-194 (376)
180 2atv_A RERG, RAS-like estrogen 98.8 3.6E-09 1.2E-13 97.9 7.2 153 101-311 28-189 (196)
181 3kkq_A RAS-related protein M-R 98.8 5.4E-09 1.9E-13 95.1 8.0 154 101-311 18-180 (183)
182 3io3_A DEHA2D07832P; chaperone 98.8 1.4E-08 4.8E-13 104.0 11.8 39 101-139 18-58 (348)
183 3oes_A GTPase rhebl1; small GT 98.8 7.2E-10 2.5E-14 103.2 1.9 154 101-311 24-185 (201)
184 3bwd_D RAC-like GTP-binding pr 98.8 2.4E-09 8.3E-14 97.0 5.3 165 101-311 8-179 (182)
185 1pui_A ENGB, probable GTP-bind 98.8 1.7E-08 5.8E-13 94.1 11.2 161 101-313 26-199 (210)
186 3p26_A Elongation factor 1 alp 98.8 1.3E-08 4.4E-13 108.6 11.7 67 182-254 109-185 (483)
187 2q3h_A RAS homolog gene family 98.8 4.4E-09 1.5E-13 97.4 7.0 167 101-311 20-193 (201)
188 2ywe_A GTP-binding protein LEP 98.8 1.9E-08 6.5E-13 109.9 13.0 108 183-313 72-184 (600)
189 2c78_A Elongation factor TU-A; 98.8 7.1E-09 2.4E-13 108.0 9.2 128 101-254 11-142 (405)
190 1mh1_A RAC1; GTP-binding, GTPa 98.8 1.9E-09 6.4E-14 98.0 4.1 166 102-312 6-179 (186)
191 2fu5_C RAS-related protein RAB 98.8 2.1E-09 7.2E-14 97.8 4.2 156 101-311 8-169 (183)
192 3o47_A ADP-ribosylation factor 98.8 1.4E-08 4.9E-13 102.9 10.7 155 101-312 165-326 (329)
193 3lxx_A GTPase IMAP family memb 98.8 3.4E-08 1.1E-12 94.9 12.6 120 101-254 29-159 (239)
194 2gco_A H9, RHO-related GTP-bin 98.8 5.1E-09 1.8E-13 97.5 6.5 165 101-310 25-197 (201)
195 3lvq_E ARF-GAP with SH3 domain 98.8 1.4E-08 4.6E-13 108.4 10.5 156 101-313 322-484 (497)
196 3cbq_A GTP-binding protein REM 98.8 8.2E-09 2.8E-13 96.1 7.6 155 101-311 23-186 (195)
197 2ew1_A RAS-related protein RAB 98.8 4.3E-09 1.5E-13 98.8 5.6 156 101-311 26-187 (201)
198 3reg_A RHO-like small GTPase; 98.8 2.8E-09 9.7E-14 98.3 4.3 157 101-311 23-186 (194)
199 1dar_A EF-G, elongation factor 98.8 5.6E-08 1.9E-12 108.1 15.4 131 100-255 11-144 (691)
200 1wb1_A Translation elongation 98.8 1.2E-08 4E-13 109.0 9.4 163 101-311 19-187 (482)
201 3ihw_A Centg3; RAS, centaurin, 98.8 9.5E-09 3.3E-13 94.6 7.5 151 100-311 19-178 (184)
202 3izy_P Translation initiation 98.8 1.8E-09 6.3E-14 116.5 2.6 159 101-311 4-166 (537)
203 3def_A T7I23.11 protein; chlor 98.8 1.8E-08 6.3E-13 98.5 9.6 119 101-254 36-165 (262)
204 3t5g_A GTP-binding protein RHE 98.8 3.4E-09 1.2E-13 96.2 3.8 154 101-311 6-167 (181)
205 2iwr_A Centaurin gamma 1; ANK 98.8 9.8E-09 3.4E-13 92.9 6.8 151 101-311 7-167 (178)
206 1f60_A Elongation factor EEF1A 98.8 2.5E-08 8.4E-13 105.8 10.9 96 182-283 83-203 (458)
207 2elf_A Protein translation elo 98.7 2.4E-08 8.3E-13 103.0 10.4 155 94-312 14-179 (370)
208 3cb4_D GTP-binding protein LEP 98.7 3.4E-08 1.2E-12 108.0 11.3 108 183-313 70-182 (599)
209 3vqt_A RF-3, peptide chain rel 98.7 6.2E-08 2.1E-12 105.0 12.8 123 101-254 31-166 (548)
210 3th5_A RAS-related C3 botulinu 98.2 1.4E-09 4.9E-14 101.3 0.0 166 101-310 30-202 (204)
211 1d2e_A Elongation factor TU (E 98.7 2.2E-08 7.6E-13 104.1 8.9 126 102-254 4-133 (397)
212 3l0i_B RAS-related protein RAB 98.7 6.4E-10 2.2E-14 103.4 -2.5 153 101-312 33-195 (199)
213 3t34_A Dynamin-related protein 98.7 6.6E-08 2.3E-12 99.0 12.2 80 183-262 135-225 (360)
214 3mca_A HBS1, elongation factor 98.7 1.3E-09 4.4E-14 119.2 -0.6 67 182-254 253-329 (592)
215 3c5c_A RAS-like protein 12; GD 98.7 9.6E-09 3.3E-13 94.6 4.8 150 100-311 20-184 (187)
216 1s0u_A EIF-2-gamma, translatio 98.7 7.8E-08 2.7E-12 100.2 12.2 110 184-312 81-197 (408)
217 2j0v_A RAC-like GTP-binding pr 98.7 1E-08 3.5E-13 95.9 4.9 163 101-312 9-179 (212)
218 1kk1_A EIF2gamma; initiation o 98.7 4.1E-08 1.4E-12 102.4 9.8 110 184-312 83-199 (410)
219 2atx_A Small GTP binding prote 98.7 2.5E-08 8.7E-13 91.7 7.2 165 101-310 18-190 (194)
220 2rdo_7 EF-G, elongation factor 98.7 2.6E-07 8.9E-12 103.0 16.1 65 183-254 81-148 (704)
221 2g3y_A GTP-binding protein GEM 98.7 4.3E-08 1.5E-12 93.2 8.2 156 101-311 37-201 (211)
222 1zo1_I IF2, translation initia 98.6 3.3E-08 1.1E-12 105.9 8.1 158 100-310 3-164 (501)
223 1nrj_B SR-beta, signal recogni 98.6 1.1E-07 3.8E-12 89.2 10.8 113 100-255 11-135 (218)
224 1g7s_A Translation initiation 98.6 1.1E-07 3.8E-12 103.9 11.7 117 184-311 70-216 (594)
225 1zun_B Sulfate adenylate trans 98.6 1E-07 3.6E-12 100.1 11.1 66 183-254 103-171 (434)
226 3igf_A ALL4481 protein; two-do 98.6 3.1E-07 1.1E-11 94.9 14.2 36 102-137 3-38 (374)
227 1wxq_A GTP-binding protein; st 98.6 3.3E-08 1.1E-12 103.0 6.6 28 103-137 2-29 (397)
228 1jny_A EF-1-alpha, elongation 98.6 1.8E-07 6E-12 98.5 11.5 67 182-254 82-158 (435)
229 3j25_A Tetracycline resistance 98.6 1.1E-07 3.9E-12 104.7 10.2 182 103-312 4-238 (638)
230 2dy1_A Elongation factor G; tr 98.6 2.2E-07 7.6E-12 102.9 12.5 125 101-253 9-139 (665)
231 1m7b_A RND3/RHOE small GTP-bin 98.6 1.8E-08 6.1E-13 92.2 3.0 166 101-310 7-180 (184)
232 3llu_A RAS-related GTP-binding 98.6 9.8E-08 3.4E-12 88.3 7.5 113 183-310 68-194 (196)
233 3avx_A Elongation factor TS, e 98.5 2.6E-07 9E-12 106.6 12.0 169 101-312 296-485 (1289)
234 2cjw_A GTP-binding protein GEM 98.5 7.9E-08 2.7E-12 89.1 6.3 156 102-311 7-170 (192)
235 3r7w_A Gtpase1, GTP-binding pr 98.5 7.5E-08 2.6E-12 96.6 6.5 117 102-254 4-129 (307)
236 1tq4_A IIGP1, interferon-induc 98.5 6.9E-07 2.3E-11 93.4 13.9 261 101-422 69-348 (413)
237 2zej_A Dardarin, leucine-rich 98.5 1E-07 3.5E-12 87.3 6.3 162 103-312 4-177 (184)
238 1gwn_A RHO-related GTP-binding 98.5 1.7E-08 5.9E-13 94.8 0.9 166 101-310 28-201 (205)
239 1jal_A YCHF protein; nucleotid 98.5 1E-06 3.5E-11 90.6 13.1 102 103-225 4-108 (363)
240 2wkq_A NPH1-1, RAS-related C3 98.5 6E-08 2E-12 96.7 3.6 167 101-311 155-328 (332)
241 3q3j_B RHO-related GTP-binding 98.5 5.8E-08 2E-12 91.6 3.2 168 101-311 27-201 (214)
242 1ihu_A Arsenical pump-driving 98.4 3.3E-07 1.1E-11 99.9 9.4 41 101-141 327-367 (589)
243 2r8r_A Sensor protein; KDPD, P 98.4 3.4E-07 1.2E-11 88.0 8.2 44 102-145 7-50 (228)
244 3of5_A Dethiobiotin synthetase 98.4 3.5E-06 1.2E-10 81.0 15.4 166 101-271 4-202 (228)
245 1r5b_A Eukaryotic peptide chai 98.4 2.7E-07 9.3E-12 98.0 7.8 66 183-254 120-195 (467)
246 4dkx_A RAS-related protein RAB 98.4 1.3E-06 4.5E-11 83.2 11.6 151 102-312 14-175 (216)
247 1udx_A The GTP-binding protein 98.4 6.6E-07 2.2E-11 93.7 10.2 156 102-312 158-324 (416)
248 2f9l_A RAB11B, member RAS onco 98.4 2.4E-07 8.1E-12 85.9 5.7 150 102-311 6-166 (199)
249 2qag_A Septin-2, protein NEDD5 98.3 1.8E-06 6.2E-11 88.6 10.5 22 101-122 37-58 (361)
250 3fgn_A Dethiobiotin synthetase 98.3 1.4E-05 4.6E-10 78.1 16.0 147 101-252 26-198 (251)
251 3h2y_A GTPase family protein; 98.3 3.9E-07 1.3E-11 93.9 4.3 122 103-256 162-289 (368)
252 1oix_A RAS-related protein RAB 98.2 5.4E-07 1.9E-11 83.2 4.1 22 101-122 29-50 (191)
253 3qxc_A Dethiobiotin synthetase 98.2 5.9E-05 2E-09 73.2 18.4 148 101-254 21-203 (242)
254 2i3b_A HCR-ntpase, human cance 98.2 2.3E-07 7.8E-12 86.8 1.0 27 103-129 3-29 (189)
255 3a4m_A L-seryl-tRNA(SEC) kinas 98.2 3.1E-06 1.1E-10 82.6 9.2 42 101-142 4-45 (260)
256 3ec1_A YQEH GTPase; atnos1, at 98.2 1.7E-07 5.8E-12 96.6 0.1 119 103-255 164-289 (369)
257 1gvn_B Zeta; postsegregational 98.2 1.3E-05 4.5E-10 79.5 13.4 66 68-142 6-71 (287)
258 2dby_A GTP-binding protein; GD 98.2 3.6E-06 1.2E-10 86.7 8.5 22 103-124 3-24 (368)
259 2qag_B Septin-6, protein NEDD5 98.1 1.7E-06 5.8E-11 90.7 6.0 59 216-275 151-217 (427)
260 1xjc_A MOBB protein homolog; s 98.1 3.9E-06 1.3E-10 77.2 7.7 40 101-140 4-43 (169)
261 2orw_A Thymidine kinase; TMTK, 98.1 3.2E-06 1.1E-10 78.5 6.8 163 102-281 4-171 (184)
262 3ec2_A DNA replication protein 98.1 6.2E-06 2.1E-10 75.3 7.4 37 101-137 38-75 (180)
263 2w0m_A SSO2452; RECA, SSPF, un 98.1 4.7E-05 1.6E-09 71.3 13.6 39 102-140 24-62 (235)
264 1n0u_A EF-2, elongation factor 98.1 3.7E-06 1.3E-10 95.5 7.0 64 183-253 97-163 (842)
265 4fn5_A EF-G 1, elongation fact 98.1 1E-05 3.5E-10 90.2 10.2 128 101-253 13-150 (709)
266 2qnr_A Septin-2, protein NEDD5 98.0 2.1E-05 7.3E-10 78.6 11.1 23 100-122 17-39 (301)
267 1nij_A Hypothetical protein YJ 98.0 5.3E-05 1.8E-09 76.2 14.1 172 102-277 5-189 (318)
268 2cvh_A DNA repair and recombin 98.0 5.6E-05 1.9E-09 70.5 13.2 35 102-139 21-55 (220)
269 2dr3_A UPF0273 protein PH0284; 98.0 5.6E-05 1.9E-09 71.7 13.1 40 101-140 23-62 (247)
270 3c5h_A Glucocorticoid receptor 98.0 1E-05 3.4E-10 78.6 7.8 82 213-311 162-253 (255)
271 2ohf_A Protein OLA1, GTP-bindi 98.0 9.5E-06 3.2E-10 84.3 7.8 104 101-225 22-128 (396)
272 1puj_A YLQF, conserved hypothe 98.0 8.4E-06 2.9E-10 80.9 6.8 32 100-137 119-150 (282)
273 2r6a_A DNAB helicase, replicat 97.9 0.0013 4.5E-08 69.2 23.3 39 101-139 203-242 (454)
274 2b8t_A Thymidine kinase; deoxy 97.9 4.7E-05 1.6E-09 73.0 10.3 101 101-210 12-114 (223)
275 1xp8_A RECA protein, recombina 97.9 9.9E-05 3.4E-09 75.9 13.2 89 101-196 74-165 (366)
276 3sop_A Neuronal-specific septi 97.9 3.8E-05 1.3E-09 75.6 9.4 128 102-255 3-155 (270)
277 3hr8_A Protein RECA; alpha and 97.8 0.00014 4.8E-09 74.4 13.4 88 101-196 61-152 (356)
278 1u94_A RECA protein, recombina 97.8 7.3E-05 2.5E-09 76.6 10.9 88 101-196 63-154 (356)
279 2qag_C Septin-7; cell cycle, c 97.8 0.00014 4.7E-09 76.1 13.1 25 98-122 28-52 (418)
280 2p5t_B PEZT; postsegregational 97.8 0.00012 4.1E-09 70.9 11.6 42 99-143 30-71 (253)
281 2q6t_A DNAB replication FORK h 97.8 0.0017 5.7E-08 68.1 20.8 116 101-224 200-319 (444)
282 3bh0_A DNAB-like replicative h 97.8 0.00026 9E-09 70.9 13.7 117 101-224 68-190 (315)
283 1cr0_A DNA primase/helicase; R 97.7 0.00038 1.3E-08 68.5 14.5 38 102-139 36-74 (296)
284 2axn_A 6-phosphofructo-2-kinas 97.7 0.00012 4E-09 78.8 11.4 45 99-143 33-77 (520)
285 1xx6_A Thymidine kinase; NESG, 97.7 0.00017 5.7E-09 67.4 11.0 97 101-210 8-106 (191)
286 3szr_A Interferon-induced GTP- 97.7 6E-05 2E-09 82.6 8.6 74 183-256 146-230 (608)
287 3bgw_A DNAB-like replicative h 97.7 0.00038 1.3E-08 73.3 14.3 117 101-224 197-319 (444)
288 2zr9_A Protein RECA, recombina 97.7 0.00038 1.3E-08 71.0 13.6 89 101-196 61-152 (349)
289 1f5n_A Interferon-induced guan 97.7 3.5E-05 1.2E-09 83.9 6.0 29 100-134 37-65 (592)
290 2ehv_A Hypothetical protein PH 97.6 0.00017 5.7E-09 68.5 9.6 39 101-139 30-69 (251)
291 2z43_A DNA repair and recombin 97.6 0.00014 4.7E-09 73.2 9.2 92 101-195 107-215 (324)
292 4a1f_A DNAB helicase, replicat 97.6 0.00032 1.1E-08 71.3 11.9 143 102-251 47-206 (338)
293 2kjq_A DNAA-related protein; s 97.6 0.00019 6.6E-09 64.0 9.1 37 102-138 37-73 (149)
294 1v5w_A DMC1, meiotic recombina 97.6 0.00045 1.5E-08 70.1 12.9 92 101-195 122-231 (343)
295 1ni3_A YCHF GTPase, YCHF GTP-b 97.6 1.5E-05 5.2E-10 82.7 1.9 22 101-122 20-41 (392)
296 2yvu_A Probable adenylyl-sulfa 97.6 5.2E-05 1.8E-09 69.4 5.3 43 100-142 12-54 (186)
297 3lv8_A DTMP kinase, thymidylat 97.6 0.0003 1E-08 67.9 10.8 40 100-139 26-65 (236)
298 3lda_A DNA repair protein RAD5 97.6 0.00075 2.6E-08 70.1 14.5 42 101-142 178-226 (400)
299 2i1q_A DNA repair and recombin 97.6 0.00056 1.9E-08 68.4 12.7 42 101-142 98-156 (322)
300 1n0w_A DNA repair protein RAD5 97.6 0.00022 7.5E-09 67.4 9.1 39 101-139 24-68 (243)
301 3c8u_A Fructokinase; YP_612366 97.5 0.00019 6.5E-09 67.2 8.4 42 100-141 21-62 (208)
302 3e1s_A Exodeoxyribonuclease V, 97.5 0.00027 9.2E-09 76.8 10.6 102 101-224 204-316 (574)
303 1ly1_A Polynucleotide kinase; 97.5 0.00016 5.6E-09 65.0 7.5 38 101-142 2-39 (181)
304 4a74_A DNA repair and recombin 97.5 0.00035 1.2E-08 65.4 9.8 38 101-138 25-68 (231)
305 1rz3_A Hypothetical protein rb 97.5 0.00025 8.5E-09 66.0 8.6 43 100-142 21-63 (201)
306 3cnl_A YLQF, putative uncharac 97.5 7.6E-05 2.6E-09 73.1 4.7 29 102-136 100-128 (262)
307 1np6_A Molybdopterin-guanine d 97.5 0.00012 4.2E-09 67.3 5.7 39 101-139 6-44 (174)
308 3bos_A Putative DNA replicatio 97.4 0.00037 1.3E-08 65.3 8.7 39 101-139 52-90 (242)
309 1knq_A Gluconate kinase; ALFA/ 97.4 0.00043 1.5E-08 62.4 8.7 37 101-142 8-44 (175)
310 3t61_A Gluconokinase; PSI-biol 97.4 0.00057 1.9E-08 63.2 9.8 37 101-142 18-54 (202)
311 1nks_A Adenylate kinase; therm 97.4 0.00012 4.2E-09 66.5 5.1 37 102-138 2-38 (194)
312 3jvv_A Twitching mobility prot 97.4 0.0011 3.9E-08 67.7 11.9 83 101-193 123-206 (356)
313 1l8q_A Chromosomal replication 97.3 0.00014 4.8E-09 72.6 5.1 39 102-140 38-76 (324)
314 4eaq_A DTMP kinase, thymidylat 97.3 0.0033 1.1E-07 60.0 14.3 35 100-135 25-59 (229)
315 1kht_A Adenylate kinase; phosp 97.3 0.00017 5.7E-09 65.6 5.0 37 102-138 4-40 (192)
316 4b3f_X DNA-binding protein smu 97.3 0.00045 1.5E-08 76.0 9.3 43 103-148 207-249 (646)
317 1nlf_A Regulatory protein REPA 97.3 0.0012 4.1E-08 64.5 11.3 39 101-139 30-78 (279)
318 4eun_A Thermoresistant glucoki 97.3 0.00056 1.9E-08 63.4 8.3 37 101-142 29-65 (200)
319 4edh_A DTMP kinase, thymidylat 97.3 0.0019 6.5E-08 61.1 12.1 36 101-136 6-41 (213)
320 3v9p_A DTMP kinase, thymidylat 97.3 0.00099 3.4E-08 63.8 10.1 36 101-136 25-64 (227)
321 2qz4_A Paraplegin; AAA+, SPG7, 97.3 0.0043 1.5E-07 59.1 14.6 72 101-195 39-110 (262)
322 2vhj_A Ntpase P4, P4; non- hyd 97.3 0.002 6.9E-08 65.0 12.5 34 101-137 123-156 (331)
323 3io5_A Recombination and repai 97.3 0.00077 2.6E-08 67.9 9.3 87 102-195 29-123 (333)
324 4tmk_A Protein (thymidylate ki 97.3 0.0017 5.7E-08 61.6 11.2 39 101-140 3-42 (213)
325 1q57_A DNA primase/helicase; d 97.3 0.0024 8.2E-08 67.9 13.7 40 101-140 242-282 (503)
326 1odf_A YGR205W, hypothetical 3 97.2 0.00054 1.9E-08 68.0 7.9 42 99-140 29-73 (290)
327 2zts_A Putative uncharacterize 97.2 0.0014 4.6E-08 62.0 10.4 39 101-139 30-69 (251)
328 2obn_A Hypothetical protein; s 97.2 0.0028 9.6E-08 64.5 13.1 137 101-253 152-312 (349)
329 3zvl_A Bifunctional polynucleo 97.2 0.0012 4.3E-08 68.6 10.6 38 99-141 256-293 (416)
330 3uie_A Adenylyl-sulfate kinase 97.2 0.00031 1.1E-08 65.2 5.2 42 101-142 25-66 (200)
331 3tqc_A Pantothenate kinase; bi 97.2 0.00037 1.3E-08 70.3 6.2 43 99-141 90-134 (321)
332 2chg_A Replication factor C sm 97.2 0.0015 5E-08 59.8 9.7 34 104-137 41-74 (226)
333 2qt1_A Nicotinamide riboside k 97.2 0.00043 1.5E-08 64.3 6.0 42 93-140 13-56 (207)
334 2eyu_A Twitching motility prot 97.1 0.00087 3E-08 65.5 8.2 38 101-138 25-63 (261)
335 1m7g_A Adenylylsulfate kinase; 97.1 0.00029 9.9E-09 65.9 4.5 42 101-142 25-67 (211)
336 3t15_A Ribulose bisphosphate c 97.1 0.0015 5.1E-08 64.7 9.8 35 100-137 35-69 (293)
337 2qgz_A Helicase loader, putati 97.1 0.00088 3E-08 66.9 8.0 37 102-138 153-190 (308)
338 2qby_B CDC6 homolog 3, cell di 97.1 0.0025 8.4E-08 64.4 11.5 57 73-138 26-90 (384)
339 1a7j_A Phosphoribulokinase; tr 97.1 0.00024 8.1E-09 70.6 3.8 41 101-141 5-45 (290)
340 1fnn_A CDC6P, cell division co 97.1 0.0046 1.6E-07 62.3 13.4 113 73-195 23-137 (389)
341 1uj2_A Uridine-cytidine kinase 97.1 0.00038 1.3E-08 67.1 5.0 42 99-140 20-66 (252)
342 2pez_A Bifunctional 3'-phospho 97.1 0.00043 1.5E-08 62.8 5.0 41 101-141 5-45 (179)
343 3syl_A Protein CBBX; photosynt 97.1 0.017 5.7E-07 56.6 17.0 30 101-130 67-96 (309)
344 2qby_A CDC6 homolog 1, cell di 97.1 0.002 6.7E-08 64.7 10.2 38 101-138 45-85 (386)
345 1g5t_A COB(I)alamin adenosyltr 97.1 0.011 3.7E-07 55.3 14.4 88 102-193 29-130 (196)
346 3te6_A Regulatory protein SIR3 97.0 0.016 5.4E-07 58.3 16.5 43 76-127 29-71 (318)
347 1nn5_A Similar to deoxythymidy 97.0 0.00071 2.4E-08 62.7 6.0 36 100-135 8-43 (215)
348 3r7w_B Gtpase2, GTP-binding pr 97.0 0.0011 3.7E-08 67.1 7.7 69 183-255 45-121 (331)
349 2v1u_A Cell division control p 97.0 0.0048 1.6E-07 61.9 12.7 39 101-139 44-88 (387)
350 3asz_A Uridine kinase; cytidin 97.0 0.00067 2.3E-08 63.1 5.8 38 100-140 5-42 (211)
351 2rhm_A Putative kinase; P-loop 97.0 0.00034 1.2E-08 63.8 3.6 37 100-141 4-40 (193)
352 2ewv_A Twitching motility prot 97.0 0.00078 2.7E-08 69.2 6.7 83 100-193 135-219 (372)
353 2j9r_A Thymidine kinase; TK1, 97.0 0.0027 9.4E-08 60.2 9.9 112 100-224 27-139 (214)
354 1ltq_A Polynucleotide kinase; 97.0 0.0013 4.5E-08 64.6 8.1 38 101-142 2-39 (301)
355 1gtv_A TMK, thymidylate kinase 97.0 0.0002 6.9E-09 66.5 1.7 37 103-139 2-38 (214)
356 3llm_A ATP-dependent RNA helic 97.0 0.0056 1.9E-07 58.1 11.9 124 102-228 77-221 (235)
357 2z0h_A DTMP kinase, thymidylat 97.0 0.00078 2.7E-08 61.5 5.6 34 103-136 2-35 (197)
358 3q5d_A Atlastin-1; G protein, 96.9 0.00085 2.9E-08 70.6 6.1 28 99-126 65-92 (447)
359 2w58_A DNAI, primosome compone 96.9 0.00082 2.8E-08 62.0 5.4 36 102-137 55-90 (202)
360 2gk6_A Regulator of nonsense t 96.9 0.0064 2.2E-07 66.6 13.3 45 103-150 197-242 (624)
361 1pzn_A RAD51, DNA repair and r 96.9 0.005 1.7E-07 62.6 11.6 38 101-138 131-174 (349)
362 4hlc_A DTMP kinase, thymidylat 96.9 0.0045 1.5E-07 58.1 10.5 35 102-137 3-37 (205)
363 2wwf_A Thymidilate kinase, put 96.9 0.00099 3.4E-08 61.7 5.8 36 101-136 10-45 (212)
364 2f1r_A Molybdopterin-guanine d 96.9 0.00058 2E-08 62.5 3.9 39 102-140 3-41 (171)
365 2plr_A DTMP kinase, probable t 96.9 0.00097 3.3E-08 61.5 5.4 32 101-133 4-35 (213)
366 1qhx_A CPT, protein (chloramph 96.9 0.00048 1.6E-08 62.1 3.2 38 101-141 3-40 (178)
367 3h4m_A Proteasome-activating n 96.8 0.0073 2.5E-07 58.5 11.8 34 101-137 51-84 (285)
368 3upu_A ATP-dependent DNA helic 96.8 0.0033 1.1E-07 66.1 9.9 35 103-137 47-82 (459)
369 1tf7_A KAIC; homohexamer, hexa 96.8 0.0056 1.9E-07 65.5 11.8 38 101-138 281-318 (525)
370 2pbr_A DTMP kinase, thymidylat 96.8 0.0012 4.1E-08 60.0 5.6 32 103-134 2-33 (195)
371 3kb2_A SPBC2 prophage-derived 96.8 0.0007 2.4E-08 60.3 3.9 35 103-142 3-37 (173)
372 2p65_A Hypothetical protein PF 96.8 0.00087 3E-08 59.9 4.4 26 102-127 44-69 (187)
373 1sq5_A Pantothenate kinase; P- 96.8 0.0013 4.3E-08 65.7 6.0 43 99-141 78-122 (308)
374 4a0g_A Adenosylmethionine-8-am 96.8 0.013 4.4E-07 66.4 14.7 36 101-136 34-75 (831)
375 2z4s_A Chromosomal replication 96.8 0.0012 4E-08 69.4 5.7 38 102-139 131-170 (440)
376 3vkw_A Replicase large subunit 96.8 0.0065 2.2E-07 63.7 11.3 110 99-225 159-271 (446)
377 2v54_A DTMP kinase, thymidylat 96.8 0.0013 4.5E-08 60.4 5.4 35 101-137 4-38 (204)
378 3aez_A Pantothenate kinase; tr 96.7 0.0016 5.4E-08 65.3 6.2 42 99-140 88-131 (312)
379 3cmu_A Protein RECA, recombina 96.7 0.0038 1.3E-07 76.1 10.4 90 100-196 1426-1519(2050)
380 4gp7_A Metallophosphoesterase; 96.7 0.011 3.7E-07 53.4 11.1 22 101-122 9-30 (171)
381 1w36_D RECD, exodeoxyribonucle 96.7 0.0039 1.3E-07 68.1 9.6 36 102-137 165-204 (608)
382 3e2i_A Thymidine kinase; Zn-bi 96.7 0.0047 1.6E-07 58.7 8.8 111 100-224 27-139 (219)
383 4b4t_J 26S protease regulatory 96.7 0.015 5.1E-07 60.3 13.3 68 101-191 182-249 (405)
384 3d3q_A TRNA delta(2)-isopenten 96.7 0.0013 4.4E-08 66.8 5.2 34 102-140 8-41 (340)
385 1xwi_A SKD1 protein; VPS4B, AA 96.7 0.007 2.4E-07 60.6 10.5 72 101-194 45-116 (322)
386 4b4t_K 26S protease regulatory 96.7 0.0046 1.6E-07 64.7 9.2 68 101-191 206-273 (428)
387 1sxj_E Activator 1 40 kDa subu 96.7 0.016 5.3E-07 57.9 12.8 25 101-126 37-61 (354)
388 3umf_A Adenylate kinase; rossm 96.7 0.0012 4.3E-08 62.7 4.4 39 99-142 27-66 (217)
389 3cmw_A Protein RECA, recombina 96.7 0.0062 2.1E-07 73.4 11.3 89 101-196 732-823 (1706)
390 3exa_A TRNA delta(2)-isopenten 96.6 0.0033 1.1E-07 63.2 7.3 34 101-139 3-36 (322)
391 1njg_A DNA polymerase III subu 96.6 0.013 4.5E-07 53.9 11.1 28 101-128 45-72 (250)
392 4fcw_A Chaperone protein CLPB; 96.6 0.002 6.7E-08 63.3 5.6 42 101-142 47-88 (311)
393 1tev_A UMP-CMP kinase; ploop, 96.6 0.0014 4.7E-08 59.5 4.1 34 101-139 3-36 (196)
394 3a8t_A Adenylate isopentenyltr 96.6 0.004 1.4E-07 63.1 7.8 35 101-140 40-74 (339)
395 1y63_A LMAJ004144AAA protein; 96.6 0.0011 3.8E-08 60.6 3.4 36 100-139 9-44 (184)
396 2bwj_A Adenylate kinase 5; pho 96.6 0.0015 5E-08 59.7 4.2 34 101-139 12-45 (199)
397 1sxj_C Activator 1 40 kDa subu 96.6 0.0048 1.6E-07 61.9 8.4 33 104-136 49-81 (340)
398 3ld9_A DTMP kinase, thymidylat 96.6 0.0035 1.2E-07 59.9 6.9 42 99-140 19-61 (223)
399 2orv_A Thymidine kinase; TP4A 96.6 0.012 4.1E-07 56.5 10.6 84 100-196 18-103 (234)
400 1bif_A 6-phosphofructo-2-kinas 96.5 0.0068 2.3E-07 63.9 9.6 43 100-142 38-80 (469)
401 3u61_B DNA polymerase accessor 96.5 0.021 7.1E-07 56.5 12.6 37 101-140 48-84 (324)
402 2c95_A Adenylate kinase 1; tra 96.5 0.0017 5.7E-08 59.2 4.1 34 101-139 9-42 (196)
403 4b4t_M 26S protease regulatory 96.5 0.0034 1.2E-07 65.8 6.9 68 101-191 215-282 (434)
404 2jeo_A Uridine-cytidine kinase 96.5 0.0026 8.9E-08 60.9 5.6 40 100-139 24-68 (245)
405 1jjv_A Dephospho-COA kinase; P 96.5 0.0016 5.5E-08 60.3 4.0 32 102-139 3-34 (206)
406 1jbk_A CLPB protein; beta barr 96.5 0.0026 8.8E-08 56.7 5.2 37 101-137 43-86 (195)
407 4b4t_I 26S protease regulatory 96.5 0.014 4.6E-07 61.1 11.2 68 101-191 216-283 (437)
408 1ukz_A Uridylate kinase; trans 96.5 0.0019 6.5E-08 59.5 4.4 36 98-138 12-47 (203)
409 3cmw_A Protein RECA, recombina 96.5 0.009 3.1E-07 72.0 11.1 89 101-196 383-474 (1706)
410 3b9p_A CG5977-PA, isoform A; A 96.5 0.0075 2.6E-07 58.9 8.9 71 101-194 54-124 (297)
411 1lv7_A FTSH; alpha/beta domain 96.5 0.023 7.9E-07 54.3 12.2 25 101-125 45-69 (257)
412 3a00_A Guanylate kinase, GMP k 96.5 0.0015 5E-08 59.9 3.4 25 102-126 2-26 (186)
413 3crm_A TRNA delta(2)-isopenten 96.5 0.0033 1.1E-07 63.4 6.2 35 101-140 5-39 (323)
414 1uf9_A TT1252 protein; P-loop, 96.4 0.0016 5.5E-08 59.7 3.6 36 99-140 6-41 (203)
415 3d8b_A Fidgetin-like protein 1 96.4 0.018 6.1E-07 58.4 11.7 35 100-137 116-150 (357)
416 4b4t_L 26S protease subunit RP 96.4 0.0041 1.4E-07 65.3 7.0 69 101-192 215-283 (437)
417 1kgd_A CASK, peripheral plasma 96.4 0.0016 5.3E-08 59.4 3.3 25 101-125 5-29 (180)
418 2cdn_A Adenylate kinase; phosp 96.4 0.0022 7.5E-08 59.2 4.4 35 99-138 18-52 (201)
419 1zp6_A Hypothetical protein AT 96.4 0.0019 6.4E-08 58.8 3.9 22 101-122 9-30 (191)
420 3cmu_A Protein RECA, recombina 96.4 0.011 3.6E-07 72.3 11.3 88 101-195 383-473 (2050)
421 3cm0_A Adenylate kinase; ATP-b 96.4 0.0019 6.5E-08 58.5 3.8 33 101-138 4-36 (186)
422 1qf9_A UMP/CMP kinase, protein 96.4 0.0027 9.4E-08 57.4 4.8 33 101-138 6-38 (194)
423 3vaa_A Shikimate kinase, SK; s 96.4 0.0021 7.2E-08 59.4 4.1 35 101-140 25-59 (199)
424 3eph_A TRNA isopentenyltransfe 96.4 0.008 2.7E-07 62.3 8.8 34 101-139 2-35 (409)
425 3trf_A Shikimate kinase, SK; a 96.4 0.0021 7.2E-08 58.2 4.0 35 101-140 5-39 (185)
426 1x6v_B Bifunctional 3'-phospho 96.4 0.0025 8.5E-08 69.8 5.1 43 100-142 51-93 (630)
427 2bbw_A Adenylate kinase 4, AK4 96.4 0.0022 7.4E-08 61.4 4.1 25 101-125 27-51 (246)
428 2qor_A Guanylate kinase; phosp 96.4 0.0015 5.2E-08 60.6 2.9 25 101-125 12-36 (204)
429 2ze6_A Isopentenyl transferase 96.3 0.0025 8.6E-08 61.6 4.5 34 102-140 2-35 (253)
430 1aky_A Adenylate kinase; ATP:A 96.3 0.0023 8E-08 59.9 4.1 33 101-138 4-36 (220)
431 3lw7_A Adenylate kinase relate 96.3 0.0025 8.5E-08 56.3 4.1 20 102-121 2-21 (179)
432 1kag_A SKI, shikimate kinase I 96.3 0.0017 5.9E-08 58.0 3.0 33 102-139 5-37 (173)
433 3tau_A Guanylate kinase, GMP k 96.3 0.0017 5.8E-08 60.7 3.0 25 101-125 8-32 (208)
434 3eie_A Vacuolar protein sortin 96.3 0.01 3.6E-07 59.1 9.0 72 101-195 51-122 (322)
435 2if2_A Dephospho-COA kinase; a 96.3 0.002 6.9E-08 59.4 3.4 32 103-140 3-34 (204)
436 1zak_A Adenylate kinase; ATP:A 96.3 0.0023 7.8E-08 60.1 3.8 26 101-126 5-30 (222)
437 1vht_A Dephospho-COA kinase; s 96.2 0.0026 9E-08 59.4 3.9 33 101-139 4-36 (218)
438 1lvg_A Guanylate kinase, GMP k 96.2 0.0023 7.8E-08 59.4 3.4 25 102-126 5-29 (198)
439 1m8p_A Sulfate adenylyltransfe 96.2 0.0032 1.1E-07 68.4 4.7 44 99-142 394-438 (573)
440 1d2n_A N-ethylmaleimide-sensit 96.2 0.0071 2.4E-07 58.5 6.8 33 101-136 64-96 (272)
441 2jaq_A Deoxyguanosine kinase; 96.2 0.0029 1E-07 57.8 3.8 24 103-126 2-25 (205)
442 3iij_A Coilin-interacting nucl 96.2 0.0029 9.9E-08 57.2 3.7 33 101-138 11-43 (180)
443 3tr0_A Guanylate kinase, GMP k 96.2 0.0029 1E-07 58.1 3.7 25 101-125 7-31 (205)
444 3foz_A TRNA delta(2)-isopenten 96.2 0.009 3.1E-07 59.9 7.5 34 101-139 10-43 (316)
445 2pt5_A Shikimate kinase, SK; a 96.2 0.003 1E-07 56.1 3.7 33 103-140 2-34 (168)
446 2j41_A Guanylate kinase; GMP, 96.2 0.0023 8E-08 58.7 3.0 25 101-125 6-30 (207)
447 1iqp_A RFCS; clamp loader, ext 96.1 0.012 4E-07 57.7 8.3 26 104-129 49-74 (327)
448 2qp9_X Vacuolar protein sortin 96.1 0.022 7.5E-07 57.8 10.4 34 101-137 84-117 (355)
449 1sxj_B Activator 1 37 kDa subu 96.1 0.01 3.5E-07 58.1 7.8 26 104-129 45-70 (323)
450 2vli_A Antibiotic resistance p 96.1 0.0018 6.1E-08 58.4 2.0 25 101-125 5-29 (183)
451 1zd8_A GTP:AMP phosphotransfer 96.1 0.0027 9.3E-08 59.8 3.2 33 101-138 7-39 (227)
452 3sr0_A Adenylate kinase; phosp 96.1 0.0034 1.2E-07 59.1 3.8 36 103-143 2-38 (206)
453 2f6r_A COA synthase, bifunctio 96.1 0.0028 9.5E-08 62.4 3.4 37 98-140 72-108 (281)
454 2iyv_A Shikimate kinase, SK; t 96.1 0.003 1E-07 57.2 3.4 33 103-140 4-36 (184)
455 1r6b_X CLPA protein; AAA+, N-t 96.1 0.045 1.5E-06 61.0 13.5 34 101-137 488-521 (758)
456 2pt7_A CAG-ALFA; ATPase, prote 96.1 0.0047 1.6E-07 62.3 5.1 80 102-194 172-251 (330)
457 2gks_A Bifunctional SAT/APS ki 96.1 0.0036 1.2E-07 67.6 4.4 41 101-141 372-412 (546)
458 3tlx_A Adenylate kinase 2; str 96.1 0.0042 1.4E-07 59.6 4.4 34 100-138 28-61 (243)
459 3pxi_A Negative regulator of g 96.0 0.013 4.5E-07 65.4 9.0 36 102-137 522-557 (758)
460 1cke_A CK, MSSA, protein (cyti 96.0 0.0038 1.3E-07 58.4 3.9 33 102-139 6-38 (227)
461 1ye8_A Protein THEP1, hypothet 96.0 0.0039 1.3E-07 57.2 3.8 24 103-126 2-25 (178)
462 3ney_A 55 kDa erythrocyte memb 96.0 0.0036 1.2E-07 58.7 3.6 26 100-125 18-43 (197)
463 1w4r_A Thymidine kinase; type 96.0 0.034 1.2E-06 51.9 10.2 106 101-224 20-128 (195)
464 1e6c_A Shikimate kinase; phosp 96.0 0.0039 1.3E-07 55.6 3.5 34 102-140 3-36 (173)
465 1w5s_A Origin recognition comp 96.0 0.033 1.1E-06 56.5 10.8 38 101-138 50-95 (412)
466 1via_A Shikimate kinase; struc 95.9 0.0039 1.3E-07 56.1 3.4 33 103-140 6-38 (175)
467 3fb4_A Adenylate kinase; psych 95.9 0.0045 1.5E-07 57.5 3.8 31 103-138 2-32 (216)
468 3be4_A Adenylate kinase; malar 95.9 0.0039 1.3E-07 58.4 3.4 33 101-138 5-37 (217)
469 2bdt_A BH3686; alpha-beta prot 95.9 0.0044 1.5E-07 56.4 3.5 22 102-123 3-24 (189)
470 2gza_A Type IV secretion syste 95.9 0.0058 2E-07 62.4 4.7 26 102-127 176-201 (361)
471 1ak2_A Adenylate kinase isoenz 95.8 0.0058 2E-07 57.9 4.3 33 101-138 16-48 (233)
472 1p9r_A General secretion pathw 95.8 0.0076 2.6E-07 62.9 5.5 38 101-138 167-204 (418)
473 1z6g_A Guanylate kinase; struc 95.8 0.0041 1.4E-07 58.7 3.0 25 101-125 23-47 (218)
474 2ce7_A Cell division protein F 95.8 0.027 9.2E-07 59.7 9.6 71 101-194 49-119 (476)
475 3hjn_A DTMP kinase, thymidylat 95.8 0.01 3.4E-07 55.3 5.6 46 103-149 2-47 (197)
476 2grj_A Dephospho-COA kinase; T 95.8 0.0042 1.4E-07 57.8 2.9 35 101-140 12-46 (192)
477 1zuh_A Shikimate kinase; alpha 95.8 0.0059 2E-07 54.4 3.8 34 101-139 7-40 (168)
478 3dl0_A Adenylate kinase; phosp 95.7 0.0049 1.7E-07 57.4 3.1 34 103-141 2-36 (216)
479 1znw_A Guanylate kinase, GMP k 95.7 0.0059 2E-07 56.7 3.6 25 101-125 20-44 (207)
480 2qmh_A HPR kinase/phosphorylas 95.7 0.009 3.1E-07 56.2 4.8 33 101-139 34-66 (205)
481 2xb4_A Adenylate kinase; ATP-b 95.7 0.0064 2.2E-07 57.3 3.8 31 103-138 2-32 (223)
482 4b4t_H 26S protease regulatory 95.7 0.02 7E-07 60.3 8.0 70 100-192 242-311 (467)
483 2chq_A Replication factor C sm 95.7 0.0088 3E-07 58.4 5.0 26 104-129 41-66 (319)
484 1e4v_A Adenylate kinase; trans 95.6 0.0069 2.4E-07 56.5 3.8 30 103-137 2-31 (214)
485 2zan_A Vacuolar protein sortin 95.6 0.012 4E-07 61.7 5.8 35 101-137 167-201 (444)
486 2wjy_A Regulator of nonsense t 95.6 0.017 5.8E-07 65.1 7.5 46 103-151 373-419 (800)
487 2g0t_A Conserved hypothetical 95.6 0.14 4.9E-06 51.9 13.6 112 101-224 169-284 (350)
488 3vfd_A Spastin; ATPase, microt 95.6 0.045 1.5E-06 55.9 10.0 34 101-137 148-181 (389)
489 2gno_A DNA polymerase III, gam 95.5 0.059 2E-06 53.6 10.5 24 101-124 18-41 (305)
490 3hws_A ATP-dependent CLP prote 95.5 0.051 1.8E-06 54.8 10.2 34 101-137 51-84 (363)
491 1sxj_D Activator 1 41 kDa subu 95.5 0.043 1.5E-06 54.5 9.5 24 104-127 61-84 (353)
492 3lnc_A Guanylate kinase, GMP k 95.5 0.0041 1.4E-07 58.7 1.9 26 100-125 26-52 (231)
493 1ex7_A Guanylate kinase; subst 95.5 0.0092 3.1E-07 55.3 4.1 21 104-124 4-24 (186)
494 1um8_A ATP-dependent CLP prote 95.5 0.013 4.5E-07 59.5 5.7 33 102-137 73-105 (376)
495 3cf2_A TER ATPase, transitiona 95.5 0.027 9.4E-07 63.3 8.7 69 100-191 237-305 (806)
496 3ake_A Cytidylate kinase; CMP 95.5 0.0083 2.8E-07 55.0 3.8 33 103-140 4-36 (208)
497 1a5t_A Delta prime, HOLB; zinc 95.5 0.11 3.9E-06 51.8 12.5 27 101-127 24-50 (334)
498 1tue_A Replication protein E1; 95.5 0.0066 2.3E-07 57.4 3.1 24 102-125 59-82 (212)
499 1jr3_A DNA polymerase III subu 95.5 0.044 1.5E-06 54.8 9.4 27 101-127 38-64 (373)
500 1c9k_A COBU, adenosylcobinamid 95.4 0.013 4.4E-07 54.1 4.8 30 104-137 2-31 (180)
No 1
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=100.00 E-value=1.8e-96 Score=775.87 Aligned_cols=436 Identities=43% Similarity=0.745 Sum_probs=392.7
Q ss_pred ChhHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHH
Q 011076 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIF 80 (494)
Q Consensus 1 m~~~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~ 80 (494)
|||++|+++|+.++++|+|+++|||+++++.+++|+.+|+++||+++++.+|++++++.+..+++..++++.++++++|+
T Consensus 1 m~~~~l~~~l~~~~~~l~~~~~l~e~~~~~~l~ei~~~Ll~adv~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~v~~~l~ 80 (443)
T 3dm5_A 1 MVLDNLGKALANTLKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVY 80 (443)
T ss_dssp CCSTHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999988888889999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCccee
Q 011076 81 NELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160 (494)
Q Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~ 160 (494)
++|.++|++.... ....++|.+|+++|++|||||||+++||.+|+++|++|++|++|+||++|++||+.++.+.++|++
T Consensus 81 ~eL~~~L~~~~~~-~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~ 159 (443)
T 3dm5_A 81 EELTKFLGTEAKP-IEIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVF 159 (443)
T ss_dssp HHHHHHTTSSCCC-CCCCSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEE
T ss_pred HHHHHHhcCcccc-cccCCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEE
Confidence 9999999974333 333446899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhccC
Q 011076 161 GSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240 (494)
Q Consensus 161 ~~~~~~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~ 240 (494)
...+..+|+.++.+++..+..++||+|||||||+++.+..++.++..+..+..||+++||+|++.|+++.+++..|++.+
T Consensus 160 ~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~~~ 239 (443)
T 3dm5_A 160 GNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEAT 239 (443)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHSC
T ss_pred ecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHhhC
Confidence 98888999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCCCCC--chH
Q 011076 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQ--QPE 318 (494)
Q Consensus 241 ~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~~~--~~~ 318 (494)
+++++|+||+|+++++|.++++...+++||.|+++||++++|++|+|++|+++++|+||+.+|+|++++.+++++ ++
T Consensus 240 ~i~gVIlTKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg~gd~~~l~e~~~~~~~~~~~~~~- 318 (443)
T 3dm5_A 240 PIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLGLGDIQGLLEKFKELEKEVEIKEE- 318 (443)
T ss_dssp TTEEEEEECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTTTTCHHHHHHHHHHHHTTHHHHHH-
T ss_pred CCeEEEEECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcCCCcHHHHHHHHHHhhhhhHHHHH-
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998765 54
Q ss_pred HHhhhhcchhhHHHHHHHHHHHhccCChhHHhhcCCCCCCccCcchhhhhhHHhHHhHhHhhcCCCHHhhcCCCCCCcch
Q 011076 319 LLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMND 398 (494)
Q Consensus 319 ~~~~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~i~~ 398 (494)
+.+|+.+|+|||+||++|+++|+||||+++||+||||++ ..+++...+.++++++||+|||+|||++||+|| .+|++
T Consensus 319 ~~~k~~~~~f~l~d~~~q~~~~~kmg~~~~~~~m~pg~~-~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~p--~~~~~ 395 (443)
T 3dm5_A 319 DIERFLRGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLG-YSLPDDVISIGEERLKKFKVIMDSMTEEELLNP--EIINY 395 (443)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHTTCC--------------------CCCCHHHHHHHHHHHTTSCHHHHHCG--GGCCH
T ss_pred HHHHHhhCCcCHHHHHHHHHHHHhccCHHHHHHHCCCch-hhcchhhhhhhHHHHHHHHHHHHcCCHHHhcCc--hhcCh
Confidence 899999999999999999999999999999999999998 333433345678999999999999999999997 88999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhhh
Q 011076 399 SRIMRIARGSGRQVREVMEMLEEYKRLAKIWSKMKGLKIPKKGEMSALS 447 (494)
Q Consensus 399 sr~~rIa~gsg~~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (494)
||++|||+||||+++|||+||+||++|++|||+|++ |++.+||
T Consensus 396 sr~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~~------~~~~~~~ 438 (443)
T 3dm5_A 396 SRIKRIARGSGTSTKDVKELLDQYRQMKKLFKSMNK------RQLSRLA 438 (443)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTCCS------CCCC---
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHcC------CCHHHHH
Confidence 999999999999999999999999999999999976 4555555
No 2
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=100.00 E-value=3.6e-94 Score=771.71 Aligned_cols=480 Identities=59% Similarity=0.969 Sum_probs=426.1
Q ss_pred ChhHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHH
Q 011076 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIF 80 (494)
Q Consensus 1 m~~~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~ 80 (494)
|||++|+++|+.++++|++++++||+++++.+++|+.+|+++||+++++.+|++++++.+.++++.++++|.+++.++|+
T Consensus 1 m~~~~l~~~l~~~~~~l~~~~~~~e~~~~~~l~el~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~ 80 (504)
T 2j37_W 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVF 80 (504)
T ss_dssp -------CTTTTTTTCCCSCSSCCHHHHHHHHHHHHHHHCCTTTSSSTTHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCcccccCChHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999998888888899999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCccee
Q 011076 81 NELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160 (494)
Q Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~ 160 (494)
++|++++++...++.+...++.+|+|+|+||||||||+++||.+|+++|++|++|++|+||+++++||+.++++.+++++
T Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~ 160 (504)
T 2j37_W 81 KELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFY 160 (504)
T ss_dssp HHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEE
Confidence 99999999877666665567889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhccC
Q 011076 161 GSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240 (494)
Q Consensus 161 ~~~~~~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~ 240 (494)
...+..+|++++.+++..+...+||++||||||+++.+..++.++..+..+..||.+++|+|++.++++...+..|++.+
T Consensus 161 ~~~~~~dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~~~~~~ 240 (504)
T 2j37_W 161 GSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV 240 (504)
T ss_dssp ECCCCSCHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHHHHhhc
Confidence 88788899999999999987789999999999999887788888887777779999999999999988888888888777
Q ss_pred CeeEEEEeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCCCCCchHHH
Q 011076 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELL 320 (494)
Q Consensus 241 ~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~~~~~~~~ 320 (494)
+++++|+||+|..++++.++++...+++||.|+++|++++++.+|+|.+++|+++|+||+..|+|++.+. ++++.+++.
T Consensus 241 ~i~gvVlNK~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~-~~~~~~~l~ 319 (504)
T 2j37_W 241 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL-KLDDNEALI 319 (504)
T ss_dssp CCCCEEEECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT-TTCCCTTTT
T ss_pred CceEEEEeCCccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH-HHHHHHHHH
Confidence 7789999999999998889999999999999999999999999999999999999999999999999998 566678899
Q ss_pred hhhhcchhhHHHHHHHHHHHhccCChhHHhhcCCCCCCc--cCcchhhhhhHHhHHhHhHhhcCCCHHhhcCCC-CCCc-
Q 011076 321 QKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSE--LMPKGREKESQAKIKRYMTMMDSMTNEELDSSN-PKLM- 396 (494)
Q Consensus 321 ~~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~--~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~-~~~i- 396 (494)
+|+..|+|+++||++|++++.+||++++|++||||++ . +. ....+.+++.++|++|||+|||++||++++ |++|
T Consensus 320 ~k~~~g~~~l~d~~~~l~~~~~~G~~~~~~~~ipg~~-~~~~~-~~~~~~~~~~~~~~~~ii~smt~~Er~~~~~p~~~~ 397 (504)
T 2j37_W 320 EKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFG-TDFMS-KGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFS 397 (504)
T ss_dssp TSCTTSGGGGCCCHHHHHHCCCCCCCCSSCCCCSCCS-CGGGC-SCCCCCHHHHHHHHHHHHTTSCHHHHHCTTHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHhccccc-hhhcc-ccccccChHhhhhhHHHHHhCCHHHhcCCCCCcccC
Confidence 9999999999999999999999999999999999998 4 32 222345788999999999999999999966 7899
Q ss_pred -chHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCCcch----hhhcchhHHHhhhcCChhHHHhcCCc
Q 011076 397 -NDSRIMRIARGSGRQVREVMEMLEEYKRLAKIWSKMKGLK-IPKKGEMS----ALSRNMNAQHMSKVLPQGMLKQIGGV 470 (494)
Q Consensus 397 -~~sr~~rIa~gsg~~~~~v~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (494)
++||++|||+||||+++|||+||+||++|++|||+|++.+ ++..+.++ .+..++++++|+++|||+++++|||+
T Consensus 398 ~~~sr~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (504)
T 2j37_W 398 KQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGM 477 (504)
T ss_dssp HCTHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCCCCCSCTTHHHHTCCCCSSHHHHHHHHHCCCCCCSHHHHHHHHHHTT
T ss_pred CChHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcccccCCcCCchhhhhhhhhhhHHHHHHHhhcCHHHHHhcCCC
Confidence 9999999999999999999999999999999999998743 22223332 22222346788999999999999999
Q ss_pred ccHHHHHHHcCCc
Q 011076 471 GGLQNLMKQMGST 483 (494)
Q Consensus 471 ~~~~~~~~~~~~~ 483 (494)
+||++||+||+++
T Consensus 478 ~~~~~~~~~~~~~ 490 (504)
T 2j37_W 478 AGLQSMMRQFQQG 490 (504)
T ss_dssp SSSSHHHHHHC--
T ss_pred chHHHHHHHHhcc
Confidence 9999999999963
No 3
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=100.00 E-value=1.5e-90 Score=730.74 Aligned_cols=423 Identities=39% Similarity=0.680 Sum_probs=381.9
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHHHhhc
Q 011076 8 GSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKML 87 (494)
Q Consensus 8 ~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL~~ll 87 (494)
++|+++|++|+++++|||+++++.+++|+.+|+++||+++++.+|++++++.+.++++..+++|.++++++|+++|.++|
T Consensus 4 ~~l~~~~~~l~~~~~l~e~~~~~~l~el~~~Ll~aDv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~eL~~~L 83 (433)
T 3kl4_A 4 ENIRDAVRKFLTGSTPYEKAVDEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLF 83 (433)
T ss_dssp TTHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHhc
Confidence 46788889999999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCC
Q 011076 88 DPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESD 167 (494)
Q Consensus 88 ~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~d 167 (494)
++...+......++.+|+++|++|||||||+++||.+|+.+|++|+++++|+||+++++||..++.+.++|++......+
T Consensus 84 ~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~d 163 (433)
T 3kl4_A 84 GGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQN 163 (433)
T ss_dssp CSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSC
T ss_pred CccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCC
Confidence 97644444445568999999999999999999999999999999999999999999999999999999999999888889
Q ss_pred hHHHHHHHHHHHhccCCcEEEEeCCCCCc--hhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhccCCeeEE
Q 011076 168 PVRIAVEGVETFKKENCDLIIVDTSGRHK--QEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAV 245 (494)
Q Consensus 168 p~~i~~~~l~~~~~~~~dvIIIDTaG~~~--~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~~i~~v 245 (494)
|+.++..++..+..++||+|||||||+++ .+..++.++..+..+..|+.++||+|++.|+++.+++..|++.++++++
T Consensus 164 p~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~~~~~gV 243 (433)
T 3kl4_A 164 PIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQASPIGSV 243 (433)
T ss_dssp HHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHHCSSEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcccCCcEE
Confidence 99999999999988899999999999988 8889999999999999999999999999999999999999999999999
Q ss_pred EEeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCCCCCchHHHhhhhc
Q 011076 246 IVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSE 325 (494)
Q Consensus 246 VltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~~~~~~~~~~~~~ 325 (494)
|+||+|+++++|.++++...+++||+|+|+||++++|++|+|.+++++++|+||+.+|+|++++.+++++++++.+|+.+
T Consensus 244 IlTKlD~~a~~G~als~~~~~g~Pi~fig~Ge~v~dL~~f~p~~~~~~llg~gd~~~l~e~~~~~~~~~~~~~~~~k~~~ 323 (433)
T 3kl4_A 244 IITKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRILGMGDIESILEKVKGLEEYDKIQKKMEDVME 323 (433)
T ss_dssp EEECGGGCSCHHHHHHHHHHHTCEEEEEECCSSSSCEEECCHHHHHHHHHCSSHHHHHHHHHHHC---------------
T ss_pred EEecccccccchHHHHHHHHHCCCEEEEECCCChHhCccCCHHHHHHHhcCCchHHHHHHHHHHhhhHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred c--hhhHHHHHHHHHHHhccCChhHHhhcCCCCCCccCcc---hhhhhhHHhHHhHhHhhcCCCHHhhcCCCCCCcchHH
Q 011076 326 G--NFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPK---GREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSR 400 (494)
Q Consensus 326 ~--~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~~~~~---~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~i~~sr 400 (494)
| +||++||++||++|+||||+++||+||||++ ..++. ...+.++++++||+|||+|||++||+|| .+|++||
T Consensus 324 g~~~f~~~d~~~q~~~~~kmg~~~~~~~m~pg~~-~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~p--~~~~~sr 400 (433)
T 3kl4_A 324 GKGKLTLRDVYAQIIALRKMGPLSKVLQHIPGLG-IMLPTPSEDQLKIGEEKIRRWLAALNSMTYKELENP--NIIDKSR 400 (433)
T ss_dssp ----CCHHHHHHHHHHHHHCCSSSGGGGTTTCCC-CCSSTTHHHHHHTTSSCCCSHHHHHHSSCSSTTTCG--GGCCHHH
T ss_pred CCCCCCHHHHHHHHHHHHhccCHHHHHHhCCCCc-cccccchhhhhhhhHHHHHHHHHHHHcCCHHHhhCc--hhccHHH
Confidence 9 8999999999999999999999999999998 33342 3345678899999999999999999996 8899999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhc
Q 011076 401 IMRIARGSGRQVREVMEMLEEYKRLAKIWSKMK 433 (494)
Q Consensus 401 ~~rIa~gsg~~~~~v~~ll~~~~~~~~~~~~~~ 433 (494)
++|||+||||+++|||+||+||++|++|||+|+
T Consensus 401 ~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~ 433 (433)
T 3kl4_A 401 MRRIAEGSGLEVEEVRELLEWYNNMNRLLKMVK 433 (433)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHccCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999984
No 4
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=100.00 E-value=5e-84 Score=683.33 Aligned_cols=430 Identities=30% Similarity=0.503 Sum_probs=389.3
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHH
Q 011076 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFN 81 (494)
Q Consensus 2 ~~~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~ 81 (494)
||++|+++|++++++|+|+++|||+++++.+++|+.+|+++||+++++.+|++++++.+.++++..+++|.+++.++|++
T Consensus 1 m~~~l~~~l~~~~~~~~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (433)
T 2xxa_A 1 MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRN 80 (433)
T ss_dssp ---CHHHHHHHHHHHSCCCSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHSSSCCCSSSCTTTTTHHHHHH
T ss_pred ChHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred HHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhc-CCceEEEEcccCcchhHHHHHhhhhccCccee
Q 011076 82 ELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160 (494)
Q Consensus 82 eL~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~-g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~ 160 (494)
+|.+++++...++.+...++++|+++|++||||||++++||.+|+++ |++|++|++|+||+++++|++.++...+++++
T Consensus 81 ~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~ 160 (433)
T 2xxa_A 81 ELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF 160 (433)
T ss_dssp HHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEEC
T ss_pred HHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEE
Confidence 99999997666666655678999999999999999999999999998 99999999999999999999999999999998
Q ss_pred ccCCCCChHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhccC
Q 011076 161 GSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240 (494)
Q Consensus 161 ~~~~~~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~ 240 (494)
......+|..++.+++..+...+||||||||||+++.+..++.++..+..+..|+.+++|+|++.++++...++.|+..+
T Consensus 161 ~~~~~~dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~~~f~~~l 240 (433)
T 2xxa_A 161 PSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEAL 240 (433)
T ss_dssp CCCSSSCHHHHHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHHHHHHHHS
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHHHHHhccC
Confidence 87777889999889999888779999999999999888889999988888889999999999999999998899998888
Q ss_pred CeeEEEEeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCCCCCchHHH
Q 011076 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELL 320 (494)
Q Consensus 241 ~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~~~~~~~~ 320 (494)
++.++|+||+|.++++|.++++...++.||.|+|+|++++++.+|+|..++++++|+||+..|++++.+.+++++.+++.
T Consensus 241 ~i~gvVlnK~D~~~~~g~~l~i~~~~~~Pi~~iG~ge~v~dl~~f~p~~~a~~l~g~gD~~~Lie~a~~~~~~~~~~~l~ 320 (433)
T 2xxa_A 241 PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLA 320 (433)
T ss_dssp CCCCEEEECTTSSSCCTHHHHHHHHHCCCEEEEECSSSSSCEEECCHHHHHHHHHCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCCCCccHHHHHHHHHHHCCCeEEEecCCCchhhhhcChHHHHHHHhCccchHHHHHHHHHhhhhhhhHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999988777778899
Q ss_pred hhhhcc-hhhHHHHHHHHHHHhccCChhHHhhcCCCCCCccCcchhhhhhHHhHHhHhHhhcCCCHHhhcCCCCCCcchH
Q 011076 321 QKLSEG-NFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDS 399 (494)
Q Consensus 321 ~~~~~~-~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~i~~s 399 (494)
+|+.+| +|+++||++||+++.+|||++++++||||++ ++.....+..+++.++|++|||+|||++||++| ++|++|
T Consensus 321 ~k~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~-~~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~--~~~~~s 397 (433)
T 2xxa_A 321 SKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMG-QIPDNVKSQMDDKVLVRMEAIINSMTMKERAKP--EIIKGS 397 (433)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHSCSSCHHHHCC----------------CHHHHHHHHHHHHTSCHHHHHCG--GGCCHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCchhhhhcCcCcc-hhhhhhhccccHHHHHHHHHHHHcCCHHHhcCc--cccCHH
Confidence 999999 8999999999999999999999999999998 453222222567889999999999999999997 788999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 011076 400 RIMRIARGSGRQVREVMEMLEEYKRLAKIWSKMKG 434 (494)
Q Consensus 400 r~~rIa~gsg~~~~~v~~ll~~~~~~~~~~~~~~~ 434 (494)
|++|||+||||+++|||+||+||++|++|||+|++
T Consensus 398 r~~ria~gsg~~~~~v~~l~~~~~~~~~~~~~~~~ 432 (433)
T 2xxa_A 398 RKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKMKK 432 (433)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999975
No 5
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=100.00 E-value=3.2e-83 Score=673.90 Aligned_cols=418 Identities=32% Similarity=0.503 Sum_probs=383.6
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHH
Q 011076 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFN 81 (494)
Q Consensus 2 ~~~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~ 81 (494)
||++|+++|++++++|+++++|||+++++.+++|+.+|+++||+++++++|++++++.+.++++..+++|.+++.++|++
T Consensus 1 m~~~l~~~l~~~~~~l~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (425)
T 2ffh_A 1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVILATVYE 80 (425)
T ss_dssp CCHHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTGGGCSCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceec
Q 011076 82 ELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161 (494)
Q Consensus 82 eL~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~ 161 (494)
+|...+++...++.+. ++.+|+++|++||||||++.+||.+++..|++|+++++|+||+++++||+.++++.+++++.
T Consensus 81 ~L~~~~~~~~~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~ 158 (425)
T 2ffh_A 81 ALKEALGGEARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLE 158 (425)
T ss_dssp HHHHHTTSSCCCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHhCCCcccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEe
Confidence 9999998765555554 67899999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCChHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhccCC
Q 011076 162 SYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVS 241 (494)
Q Consensus 162 ~~~~~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~~ 241 (494)
.....+|.+++.+++..++..+||+|||||||+++.+..++.++..+..+..|+.+++|+|++.++++.+.++.|++.++
T Consensus 159 ~~~~~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a~~f~~~l~ 238 (425)
T 2ffh_A 159 VMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG 238 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHHHHHHhcCC
Confidence 77778999999999998877899999999999998888899999888888899999999999999999999999998888
Q ss_pred eeEEEEeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCCCCCchHHHh
Q 011076 242 VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQ 321 (494)
Q Consensus 242 i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~~~~~~~~~ 321 (494)
++++|+||+|.+.++|.++++...+++||.|+|+||+++++++|+|++++++++|+||+.+|+|++++.+++++++++.
T Consensus 239 i~GVIlTKlD~~~~~g~alsi~~~~g~PI~flg~Ge~~~dl~~f~~~~~a~~ilg~gD~~~lie~a~~~~~~~~~~~~~- 317 (425)
T 2ffh_A 239 VTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDVASLAEKVRAAGLEAEAPKSA- 317 (425)
T ss_dssp CCEEEEESGGGCSSCHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHTSSCCCCHHHHHHHC-----------
T ss_pred ceEEEEeCcCCcccHHHHHHHHHHHCCCEEEEeCCCChhhccccCHHHHHHHHhcCCcHHHHHHhcccccCHHHHHHHH-
Confidence 8999999999999999999999999999999999999999999999999999999999999999999887766555543
Q ss_pred hhhcchhhHHHHHHHHHHHhccCChhHHhhcCCCCCCccCcchhhhhhHHhHHhHhHhhcCCCHHhhcCCCCCCcchHHH
Q 011076 322 KLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRI 401 (494)
Q Consensus 322 ~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~i~~sr~ 401 (494)
+ +|+++||++|++++.||||++++++||||++ .. .+.++++++|++|||+|||++||++| .+|++||+
T Consensus 318 ---~-~f~~~d~~~ql~~~~kmg~~~~~~~~~Pg~~-~~-----~~~~~~~~~~~~~i~~smt~~e~~~p--~~~~~sr~ 385 (425)
T 2ffh_A 318 ---K-ELSLEDFLKQMQNLKRLGPFSEILGLLPGVP-QG-----LKVDEKAIKRLEAIVLSMTPEERKDP--RILNGSRR 385 (425)
T ss_dssp -----CCCHHHHHHHHHHHHHTCCCTTGGGTSCSCS-CC-----TTSCHHHHHHHHHHHHTSCHHHHHCG--GGCCHHHH
T ss_pred ---H-hcCHHHHHHHHHHhhCcCChhhhhccCCCch-hh-----ccccHHHHHHHHHHHHcCCHHHhcCc--cccChHHH
Confidence 2 8999999999999999999999999999997 22 12577899999999999999999986 88999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 011076 402 MRIARGSGRQVREVMEMLEEYKRLAKIWSKMKG 434 (494)
Q Consensus 402 ~rIa~gsg~~~~~v~~ll~~~~~~~~~~~~~~~ 434 (494)
+|||+||||+++|||+||+||++|++|||+|++
T Consensus 386 ~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~~ 418 (425)
T 2ffh_A 386 KRIAKGSGTSVQEVNRFIKAFEEMKALMKSLEK 418 (425)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHccCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999976
No 6
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=100.00 E-value=1.9e-81 Score=663.41 Aligned_cols=425 Identities=44% Similarity=0.733 Sum_probs=373.5
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHH
Q 011076 3 LAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNE 82 (494)
Q Consensus 3 ~~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~e 82 (494)
|++|+++|++++++|++++++||+++++.+++++.+|+++||+.+++++|.+++++.....++..++++.+.+.++++++
T Consensus 1 ~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~e~~~~Ll~adv~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (432)
T 2v3c_C 1 MDKLGENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYEE 80 (432)
T ss_dssp CCHHHHHHHHHHHHCCSSSCCCSSTTHHHHHHHHHHHHHTCCCHHHHHHHTHHHHHHHSSSCSSCSSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccccCChHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999888877788899999999999999
Q ss_pred HHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceecc
Q 011076 83 LCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS 162 (494)
Q Consensus 83 L~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~ 162 (494)
|.++++....++.+..+++.+|+|+|++||||||++++||.+++++|++|++|++|+||+++++||+.++.+.+++++..
T Consensus 81 l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~ 160 (432)
T 2v3c_C 81 LVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGD 160 (432)
T ss_dssp HHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECC
T ss_pred HHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEec
Confidence 99999976656655556678999999999999999999999999999999999999999999999999999999999987
Q ss_pred C-CCCChHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhccC-
Q 011076 163 Y-TESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV- 240 (494)
Q Consensus 163 ~-~~~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~- 240 (494)
. +..+|..++.+++..+ .+||+|||||||+.+.+..++.++..+..+..||.++||+|++.++++.+.+..|+..+
T Consensus 161 ~~~~~dp~~i~~~~l~~~--~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~~~~~ 238 (432)
T 2v3c_C 161 ETRTKSPVDIVKEGMEKF--KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAVG 238 (432)
T ss_dssp SSSCCSSSTTHHHHHHTT--SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHHHHHHHHHTTSC
T ss_pred CCCCCCHHHHHHHHHHHh--hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHHHHHHHHHhhccc
Confidence 6 6678888877888777 68999999999999888888888877777778999999999999998888888898878
Q ss_pred CeeEEEEeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCCCCCchHHH
Q 011076 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELL 320 (494)
Q Consensus 241 ~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~~~~~~~~ 320 (494)
++.++|+||+|..+++|.++++...++.||.|+|+||+++++.+|+|.+++|+++|+||+..|++++.+.+++++ +++.
T Consensus 239 ~i~gvVlnK~D~~~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~e~~-~~~~ 317 (432)
T 2v3c_C 239 EIGSIIVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVDEKT-EESI 317 (432)
T ss_dssp SCEEEEEECSSSCSTTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSCSSS-STTH
T ss_pred CCeEEEEeCCCCccchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHHHhhh-HHHH
Confidence 878999999999988888999999999999999999999999999999999999999999999999999998887 8899
Q ss_pred hhhhcchhhHHHHHHHHHHHhccCChhHHhhcCCCCCCccCcchhhhhhHHhHHhHhHhhcCCCHHhhcCCCCCCcchHH
Q 011076 321 QKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSR 400 (494)
Q Consensus 321 ~~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~i~~sr 400 (494)
+|+..|+|+++||++|+++++||||+++||+||||++ .+.+....+.+++.+++|+|||+|||++||++| ++|+|||
T Consensus 318 ~k~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~P~~~-~~~~~~~~~~~~~~~~~~~a~i~smt~~er~~~--~~i~~sr 394 (432)
T 2v3c_C 318 DAIMRGKFTLNELMTQLEAIENMGSMKKILSMIPGFG-GAMPKELSHLTEAKIKKYKVIISSMTKEERENP--KIIKASR 394 (432)
T ss_dssp HHHCCSCCHHHHHHHHTTTTSCC------------------------CCHHHHHHHHHHHTTSCHHHHSSC--TTCCHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHccccc-cccchhhhcccHHHHHHHHHHHHhCCHHHhhCc--cccCHHH
Confidence 9999999999999999999999999999999999987 432222223467789999999999999999997 5789999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhc
Q 011076 401 IMRIARGSGRQVREVMEMLEEYKRLAKIWSKMK 433 (494)
Q Consensus 401 ~~rIa~gsg~~~~~v~~ll~~~~~~~~~~~~~~ 433 (494)
++|||+|||++++|||+||+||++|++||+++.
T Consensus 395 ~~rI~~gsg~~~~~v~~ll~~~~~~~~~~~~~~ 427 (432)
T 2v3c_C 395 IRRIARGSGTTENDVREVLRYYETTKNAIDKLH 427 (432)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHCCCC-
T ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999998753
No 7
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=100.00 E-value=4.3e-46 Score=375.66 Aligned_cols=293 Identities=43% Similarity=0.688 Sum_probs=270.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHH
Q 011076 4 AQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNEL 83 (494)
Q Consensus 4 ~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL 83 (494)
++|+++|+++++++++++++||+++++.+++++.+|+++||+.+++.+|++++++.+.++++.+++++.+++.+++.++|
T Consensus 1 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (297)
T 1j8m_F 1 SKLLDNLRDTVRKFLTGSSSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDEL 80 (297)
T ss_dssp --CHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccccCChHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999888888889999999999999999
Q ss_pred HhhcCCCCCC-CCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceecc
Q 011076 84 CKMLDPGKPS-FTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS 162 (494)
Q Consensus 84 ~~ll~~~~~~-~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~ 162 (494)
...+++...+ +.+.. ++.+|+++|++|+||||++++||.+++..|++|+++++|+||+++.+|++.++++.+++++..
T Consensus 81 ~~~~~~~~~~~i~~~~-~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~ 159 (297)
T 1j8m_F 81 SNLFGGDKEPKVIPDK-IPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGE 159 (297)
T ss_dssp HHHTTCSCCCCCSCSS-SSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECC
T ss_pred HHHhccccccccccCC-CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEec
Confidence 9999876544 54443 378999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCChHHHHHHHHHHHhccCCcEEEEeCCCCCc--hhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhccC
Q 011076 163 YTESDPVRIAVEGVETFKKENCDLIIVDTSGRHK--QEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240 (494)
Q Consensus 163 ~~~~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~--~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~ 240 (494)
....+|.+++.+++..++..+||+|||||||+.+ .++.++.++..+..+..+|.+++|+|++.+++..+.++.|++.+
T Consensus 160 ~~~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~~~~ 239 (297)
T 1j8m_F 160 PGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQAS 239 (297)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHHHHHHHHHhhC
Confidence 6778999998899999877899999999999998 87788888888888889999999999999988888888898878
Q ss_pred CeeEEEEeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCC
Q 011076 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGM 297 (494)
Q Consensus 241 ~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~ 297 (494)
++.++|+||+|..+++|.++++...++.||.|+++||+++++++|+|+.|+++++|+
T Consensus 240 ~i~gvVlnk~D~~~~~g~~~~~~~~~~~pi~~i~~Ge~v~dl~~f~~~~~~~~ll~~ 296 (297)
T 1j8m_F 240 KIGTIIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEVFNPRRFVARLHHH 296 (297)
T ss_dssp TTEEEEEECGGGCTTHHHHHHHHHTTTCCEEEEECSSSTTCEEECCHHHHHHTTCTT
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHCcCEEEEeCCCChhhcccCCHHHHHHHHhCC
Confidence 888999999999999999999999999999999999999999999999999999986
No 8
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=100.00 E-value=2.3e-43 Score=360.26 Aligned_cols=296 Identities=32% Similarity=0.590 Sum_probs=268.3
Q ss_pred hhHHHHHHHHHHHHHhh-------------------CCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhch
Q 011076 2 VLAQLGGSISRAIQQMS-------------------NATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNL 62 (494)
Q Consensus 2 ~~~~l~~~l~~~~~~l~-------------------~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~ 62 (494)
||+.|.++|+...+++. ++++++|+++++.+++|+.+|+++||+++++.+|++++++.+.+
T Consensus 7 mf~~l~~~l~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~adv~~~~~~~~~~~~~~~~~~ 86 (328)
T 3e70_C 7 MFGKLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKDVDKALDELEIDLLEADVALEVVDALREKIKQKLVG 86 (328)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTC--------CCEEECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhhhccccccccccccHHHHHhhccCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Confidence 68999999987766433 36789999999999999999999999999999999999999998
Q ss_pred hhhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCC-----CCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 63 DDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTP-----KKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 63 ~~~~~~~~~~~~i~~~v~~eL~~ll~~~~~~~~~-----~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
+++..+.++.+.+.++++++|.+++++.. +..+ ...++.+++|+|++|||||||+++|+.++...+.+|.+++.
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~~~~~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~ 165 (328)
T 3e70_C 87 KKVRIGTDKGKIIEEAVKEAVSEILETSR-RIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAAS 165 (328)
T ss_dssp CEEECC---CHHHHHHHHHHHHHHSCCSS-CCCHHHHHHSSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cccCCccCHHHHHHHHHHHHHHHHhCCcc-ccchhhhcccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEee
Confidence 88888899999999999999999998753 2222 34567899999999999999999999999999999999999
Q ss_pred ccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEE
Q 011076 138 DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLV 217 (494)
Q Consensus 138 D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~v 217 (494)
|+||+++.+|++.++.+.+++++......+|...+.+++......++|++++||+|+.+.+..++.++..+..++.||+.
T Consensus 166 D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~ 245 (328)
T 3e70_C 166 DTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLV 245 (328)
T ss_dssp CCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEE
T ss_pred cccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999998877888999999999988877899999999999998888899999988888999999
Q ss_pred EEEecCCCcccHHHHHHHHhccCCeeEEEEeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCC
Q 011076 218 IFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGM 297 (494)
Q Consensus 218 llVvDa~~g~~~~~~~~~f~~~~~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~ 297 (494)
++|+|++.+++..++++.|++..+++++|+||+|+++++|.++++...++.||.|+++||+++|+++|+|+.++++++|.
T Consensus 246 llvLDa~t~~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v~dl~~~~~~~~~~~llg~ 325 (328)
T 3e70_C 246 IFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLERIFGE 325 (328)
T ss_dssp EEEEEGGGTTHHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSSTTCEEECCHHHHHHHHTC-
T ss_pred EEEEecHHHHHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCccccccCCHHHHHHHHhCC
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 011076 298 G 298 (494)
Q Consensus 298 G 298 (494)
.
T Consensus 326 ~ 326 (328)
T 3e70_C 326 E 326 (328)
T ss_dssp -
T ss_pred c
Confidence 4
No 9
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=100.00 E-value=5.7e-42 Score=345.27 Aligned_cols=295 Identities=34% Similarity=0.509 Sum_probs=260.7
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHH
Q 011076 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFN 81 (494)
Q Consensus 2 ~~~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~ 81 (494)
||++|+++|+++++++.+++.++|+++.+.+++++.+|+.+|++++++.++.+++.....+..+..+.++.+.+.+.+.+
T Consensus 1 m~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~Ll~ad~~~~~~~~l~d~v~~~~~g~~~~~~~~~~~~~~~~~~~ 80 (295)
T 1ls1_A 1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYE 80 (295)
T ss_dssp CCHHHHHHHHHHHHTTTTSCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTTTCSCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999998877766655556777888889999
Q ss_pred HHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceec
Q 011076 82 ELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161 (494)
Q Consensus 82 eL~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~ 161 (494)
++...++....+..+. ++.+++++|++|+||||++.+||.+++..|.+|.++++|++|+++.+|+..+....+++++.
T Consensus 81 ~l~~~~~~~~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~ 158 (295)
T 1ls1_A 81 ALKEALGGEARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLE 158 (295)
T ss_dssp HHHHHTTSSCCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHCCCCceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEE
Confidence 9998887543444444 67899999999999999999999999999999999999999999999999888888998887
Q ss_pred cCCCCChHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhccCC
Q 011076 162 SYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVS 241 (494)
Q Consensus 162 ~~~~~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~~ 241 (494)
.....+|..+.+.++..+...+||+|||||||+...+...+.++..+.....|+.+++|+|+..+++..+.++.|++.++
T Consensus 159 ~~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~~~ 238 (295)
T 1ls1_A 159 VMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG 238 (295)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHHHHhhcCC
Confidence 66667898888888888876789999999999988888888888888888889999999999988888888888888888
Q ss_pred eeEEEEeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCC
Q 011076 242 VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMG 298 (494)
Q Consensus 242 i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~G 298 (494)
+.++|+||+|..+++|.++++...+++||.|+++||+++|+++|+|+.|+++++|+|
T Consensus 239 i~givlnk~d~~~~~g~~~~~~~~~~~pi~~i~~g~~~~dl~~f~~~~~~~~ll~~g 295 (295)
T 1ls1_A 239 VTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMG 295 (295)
T ss_dssp CCEEEEECGGGCSSCHHHHHHHHHHCCCEEEEC------CCEECCHHHHHHHHTTCC
T ss_pred CCEEEEECCCCCccHHHHHHHHHHHCcCEEEEeCCCCccccccCCHHHHHHHHhcCC
Confidence 889999999999999999999999999999999999999999999999999999987
No 10
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=100.00 E-value=1e-41 Score=347.01 Aligned_cols=287 Identities=28% Similarity=0.499 Sum_probs=251.4
Q ss_pred hHHHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHH
Q 011076 3 LAQLGGSISRAIQQMSNA-TIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFN 81 (494)
Q Consensus 3 ~~~l~~~l~~~~~~l~~~-~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~ 81 (494)
|..++++|+..++++.+. +.++|+ .+++|+.+|+++||+++++.+|++++++++..+++..+ +.+++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 80 (320)
T 1zu4_A 11 MLKSAFNFSKDIKKLSKKYKQADDE----FFEELEDVLIQTDMGMKMVLKVSNLVRKKTKRDTSFEN------IKDALVE 80 (320)
T ss_dssp THHHHHHHHHHHHHHHHTCCCCSHH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTTCCHHH------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhchhHHH------HHHHHHH
Confidence 456778888888888764 789986 57899999999999999999999999998776554322 8899999
Q ss_pred HHHhhcCCCC-----CCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhh---
Q 011076 82 ELCKMLDPGK-----PSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNAT--- 153 (494)
Q Consensus 82 eL~~ll~~~~-----~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~--- 153 (494)
+|.+++++.. .++.+...++.+|+|+|++|+||||++.+||.+++..|++|+++++|+||+++.+|+..++.
T Consensus 81 ~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~ 160 (320)
T 1zu4_A 81 SLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRL 160 (320)
T ss_dssp HHHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTS
T ss_pred HHHHHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccc
Confidence 9999998765 55666566788999999999999999999999999999999999999999999999998887
Q ss_pred ccCccee-ccCCCCChHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhc------CCCEEEEEecCCCc
Q 011076 154 KAKIPFY-GSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEAT------NPDLVIFVMDSSIG 226 (494)
Q Consensus 154 ~~~i~~~-~~~~~~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~------~~d~vllVvDa~~g 226 (494)
+.+++++ ......+|...+.+.+......+||+|||||||+.+.++.++.++..+..++ .||.+++|+|++.+
T Consensus 161 ~~~l~vip~~~~~~~p~~~~~~~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~ 240 (320)
T 1zu4_A 161 NNKVDLVKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG 240 (320)
T ss_dssp CTTEEEECCSSTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT
T ss_pred cCCceEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc
Confidence 7888887 4445667887888888887778999999999999998888888887666544 38999999999988
Q ss_pred ccHHHHHHHHhccCCeeEEEEeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCc
Q 011076 227 QAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300 (494)
Q Consensus 227 ~~~~~~~~~f~~~~~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi 300 (494)
++.++.++.|++.+++.++|+||+|.+.++|.++++...+++||.|+++||+++|+++|+|..|+++++| ||+
T Consensus 241 ~~~l~~~~~~~~~~~i~GvVltk~d~~~~~g~~~~~~~~~~~Pi~~i~~Ge~~~dl~~~~~~~~~~~ll~-~~~ 313 (320)
T 1zu4_A 241 QNGVIQAEEFSKVADVSGIILTKMDSTSKGGIGLAIKELLNIPIKMIGVGEKVDDLLAFDIDQYIVHLSS-GFM 313 (320)
T ss_dssp HHHHHHHHHHTTTSCCCEEEEECGGGCSCTTHHHHHHHHHCCCEEEEECSSSTTCEEECCHHHHHHHHTG-GGC
T ss_pred HHHHHHHHHHhhcCCCcEEEEeCCCCCCchhHHHHHHHHHCcCEEEEeCCCCccccccCCHHHHHHHHhC-Ccc
Confidence 8888888889888888999999999999999999999999999999999999999999999999999998 544
No 11
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=100.00 E-value=1.3e-41 Score=344.09 Aligned_cols=271 Identities=31% Similarity=0.498 Sum_probs=240.8
Q ss_pred HHHHHHHHHhh-CCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHHHhh
Q 011076 8 GSISRAIQQMS-NATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKM 86 (494)
Q Consensus 8 ~~l~~~~~~l~-~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL~~l 86 (494)
++|+..++++. |+ .+|| +.+++++.+|+++||+.+++.+|++++++ .+|. +.++++++|.++
T Consensus 28 ~~~~~~~~~~~~~~-~~~~----~~~~~l~~~L~~~dv~~~~~~~~~~~~~~----------~~~~--~~~~~~~~l~~~ 90 (306)
T 1vma_A 28 ETFFGRVVKLLKGK-KLDD----ETREELEELLIQADVGVETTEYILERLEE----------KDGD--ALESLKEIILEI 90 (306)
T ss_dssp HHTHHHHHHHHTTC-CCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHHTT----------CCSC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCH----HHHHHHHHHHHHCCCCHHHHHHHHHHHHh----------cCHH--HHHHHHHHHHHH
Confidence 34455566665 45 8998 46899999999999999999999998866 3343 789999999999
Q ss_pred cCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCC
Q 011076 87 LDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTES 166 (494)
Q Consensus 87 l~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~ 166 (494)
+++.. ++.+...++.+|+++|++||||||++.+||.+++..|.+|.++++|+||+++.+|+..++.+.+++++......
T Consensus 91 l~~~~-~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~ 169 (306)
T 1vma_A 91 LNFDT-KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGA 169 (306)
T ss_dssp TCSCC-CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTC
T ss_pred hCCCC-CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCcc
Confidence 98765 55555566889999999999999999999999999999999999999999999999999999999988877778
Q ss_pred ChHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhc------CCCEEEEEecCCCcccHHHHHHHHhccC
Q 011076 167 DPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEAT------NPDLVIFVMDSSIGQAAFDQAQAFKQSV 240 (494)
Q Consensus 167 dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~------~~d~vllVvDa~~g~~~~~~~~~f~~~~ 240 (494)
+|..++.+++..+...+||+||+||||+.+..+.+++++..+...+ .|+.+++|+|++++++++++++.|.+..
T Consensus 170 ~~~~v~~~al~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~a~~~~~~~ 249 (306)
T 1vma_A 170 DPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV 249 (306)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHHHHHHHhcC
Confidence 8988888888887778999999999999888888999988777654 4899999999998888888888898888
Q ss_pred CeeEEEEeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccC
Q 011076 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 296 (494)
Q Consensus 241 ~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G 296 (494)
+++++|+||+|.++++|.++++...+++||.|+++||+++|+++|+|+.++++++|
T Consensus 250 ~i~gvVlTk~D~~~~gG~~l~~~~~~~~Pi~~i~~Ge~~~dl~~f~~~~~~~~ll~ 305 (306)
T 1vma_A 250 NVTGIILTKLDGTAKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAFVEVLLS 305 (306)
T ss_dssp CCCEEEEECGGGCSCTTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHTC
T ss_pred CCCEEEEeCCCCccchHHHHHHHHHHCCCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999987
No 12
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=4.1e-39 Score=332.15 Aligned_cols=289 Identities=28% Similarity=0.430 Sum_probs=253.4
Q ss_pred ChhHHHHHHHHHHHHHhh-------CCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHH
Q 011076 1 MVLAQLGGSISRAIQQMS-------NATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRR 73 (494)
Q Consensus 1 m~~~~l~~~l~~~~~~l~-------~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~ 73 (494)
++|+.|+++|+.+.++|. +.+.++ +++.+++|+.+|+++||+.+++.+|++++++.+..++ +++.+
T Consensus 55 ~~f~~l~~~l~~~~~~~~~~~~l~~~~~~~~---~~~~~~~l~~~Ll~adv~~~~~~~~~~~~~~~~~~~~----~~~~~ 127 (359)
T 2og2_A 55 SDVEKVFSGFSKTRENLAVIDELLLFWNLAE---TDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGK----LKSGS 127 (359)
T ss_dssp CHHHHHHHHTHHHHHHHTHHHHHHTTCCGGG---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTS----CCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcC----CCCHH
Confidence 368899999999988886 445454 7888999999999999999999999999999876543 46778
Q ss_pred HHHHHHHHHHHhhcCCCC--CCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhh
Q 011076 74 IIQQAIFNELCKMLDPGK--PSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQN 151 (494)
Q Consensus 74 ~i~~~v~~eL~~ll~~~~--~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~ 151 (494)
++.++|+++|.+++++.. .++.+...++.+++++|++|||||||+.+||.++...+.+|.+++.|+||+++.+|+..+
T Consensus 128 ~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~ 207 (359)
T 2og2_A 128 EIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIW 207 (359)
T ss_dssp HHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHH
Confidence 999999999999998765 566665566889999999999999999999999998899999999999999999999999
Q ss_pred hhccCcceeccCCC-CChHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHh------cCCCEEEEEecCC
Q 011076 152 ATKAKIPFYGSYTE-SDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEA------TNPDLVIFVMDSS 224 (494)
Q Consensus 152 ~~~~~i~~~~~~~~-~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~------~~~d~vllVvDa~ 224 (494)
+.+.+++++..... .+|...+.+.+..+...++|++++||+|+.+..+.++.++.....+ ..|+++++|+|++
T Consensus 208 ~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpt 287 (359)
T 2og2_A 208 AERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGN 287 (359)
T ss_dssp HHHHTCEEECCSSSSCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGG
T ss_pred HHhcCeEEEEecccccChhhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCC
Confidence 88888988776666 6888888888887666678999999999988777777777643332 3599999999999
Q ss_pred CcccHHHHHHHHhccCCeeEEEEeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccC
Q 011076 225 IGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 296 (494)
Q Consensus 225 ~g~~~~~~~~~f~~~~~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G 296 (494)
.|++...++..|++..+++++|+||+|+++++|.+++++..++.||.|+++||.++||++|+|+.|+++++|
T Consensus 288 tglD~~~~~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~~Dl~~f~~~~~~~~ll~ 359 (359)
T 2og2_A 288 TGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS 359 (359)
T ss_dssp GGGGGHHHHHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCChHhccCCCHHHHHHHHhC
Confidence 999999999999888888999999999999999999999999999999999999999999999999999875
No 13
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=100.00 E-value=1.7e-39 Score=328.49 Aligned_cols=283 Identities=33% Similarity=0.516 Sum_probs=227.1
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHH
Q 011076 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFN 81 (494)
Q Consensus 2 ~~~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~ 81 (494)
+|+.|+++|+++.+++.++..+++ ++++.+++++.+|+++||+.+++.+|++++++.+. +.+.+++++
T Consensus 3 ~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 70 (304)
T 1rj9_A 3 FFDRLKAGLAKTRERLLKAIPWGG-NLEEVLEELEMALLAADVGLSATEEILQEVRASGR-----------KDLKEAVKE 70 (304)
T ss_dssp -------------------------CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCC-----------SSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccch-hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Confidence 689999999999999999988998 88999999999999999999999999999988654 345688999
Q ss_pred HHHhhcCCCCC-----CCCCC-------CCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHH
Q 011076 82 ELCKMLDPGKP-----SFTPK-------KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK 149 (494)
Q Consensus 82 eL~~ll~~~~~-----~~~~~-------~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk 149 (494)
+|.+++++... ++.+. .+++.+|+++|++|||||||+++|+.++...+.+|.+++.|+||+++.+|+.
T Consensus 71 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~ 150 (304)
T 1rj9_A 71 KLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLS 150 (304)
T ss_dssp HHTTTTCTTCHHHHHHHTTCCCCCCCCCCCSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHH
T ss_pred HHHHHhCcccccccccccccccccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHH
Confidence 99999987543 33332 2356799999999999999999999999988999999999999999999999
Q ss_pred hhhhccCcceeccCCCCChHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHh------cCCCEEEEEecC
Q 011076 150 QNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEA------TNPDLVIFVMDS 223 (494)
Q Consensus 150 ~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~------~~~d~vllVvDa 223 (494)
.+..+.+++++......+|...+.+.+..+...++|++++||+|+.+....++.++.....+ ..|+++++++|+
T Consensus 151 ~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa 230 (304)
T 1rj9_A 151 EWGKRLSIPVIQGPEGTDSAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDA 230 (304)
T ss_dssp HHHHHHTCCEECCCTTCCHHHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEET
T ss_pred HHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcH
Confidence 99888888887766667888888888877666789999999999988777777777644432 259999999999
Q ss_pred CCcccHHHHHHHHhccCCeeEEEEeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccC
Q 011076 224 SIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 296 (494)
Q Consensus 224 ~~g~~~~~~~~~f~~~~~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G 296 (494)
+.+++..+.+..|++..+++++|+||.|.++++|.++++...++.||.|+|+||+++||++|+|+.|+++++|
T Consensus 231 ~t~~~~~~~~~~~~~~~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~~~ll~ 303 (304)
T 1rj9_A 231 VTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEALLE 303 (304)
T ss_dssp TBCTHHHHHHHHHHHHHCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSSSTTCEEECCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 9999999999999887788899999999999999999999999999999999999999999999999999987
No 14
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=100.00 E-value=4.2e-39 Score=342.11 Aligned_cols=277 Identities=29% Similarity=0.470 Sum_probs=245.8
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHHHhhcCCCCCC
Q 011076 14 IQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPS 93 (494)
Q Consensus 14 ~~~l~~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL~~ll~~~~~~ 93 (494)
+.++.+.+.++++ .+++|+.+|+++||+++++.+|++++++++.. .++++.+.+.++|+++|.++|+....+
T Consensus 214 l~~~~~~~~ide~----~l~el~~~Ll~aDv~~~~~~~l~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~~l~~~~~~ 285 (503)
T 2yhs_A 214 FISLFRGKKIDDD----LFEELEEQLLIADVGVETTRKIITNLTEGASR----KQLRDAEALYGLLKEEMGEILAKVDEP 285 (503)
T ss_dssp HHHHHTTCBCSHH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH----HTCCBGGGHHHHHHHHHHHHHHTTBCC
T ss_pred HHHHhccCCCCHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh----ccCCCHHHHHHHHHHHHHHHhCCCCCC
Confidence 4444455778875 57899999999999999999999999987655 356677889999999999999876666
Q ss_pred CCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHH
Q 011076 94 FTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAV 173 (494)
Q Consensus 94 ~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~ 173 (494)
+.+...++.+|+|+|++|||||||+.+|+.++...+.+|.+++.|+||.++.+||..++.+.+++++......++...+.
T Consensus 286 Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~ 365 (503)
T 2yhs_A 286 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIF 365 (503)
T ss_dssp CCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHH
T ss_pred ceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHH
Confidence 66666678899999999999999999999999988999999999999999999999988888888887666667888888
Q ss_pred HHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhc------CCCEEEEEecCCCcccHHHHHHHHhccCCeeEEEE
Q 011076 174 EGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEAT------NPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIV 247 (494)
Q Consensus 174 ~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~------~~d~vllVvDa~~g~~~~~~~~~f~~~~~i~~vVl 247 (494)
+.+..+...++|+|||||+|+.+.+..++.++..+..+. .|+.++||+|+++|++++++++.|++.++++++|+
T Consensus 366 e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~~~~~itgvIl 445 (503)
T 2yhs_A 366 DAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITL 445 (503)
T ss_dssp HHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHHHHTCCSEEEE
T ss_pred HHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHHhhcCCCEEEE
Confidence 889888888999999999999988888888887665533 38899999999999999999999999899999999
Q ss_pred eCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCC
Q 011076 248 TKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMG 298 (494)
Q Consensus 248 tK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~G 298 (494)
||+|++.++|.+++++..+++||.|+|+|++++||.+|++..|+++++|+.
T Consensus 446 TKLD~takgG~~lsi~~~~~~PI~fig~Ge~vdDL~~f~~~~~v~~llg~~ 496 (503)
T 2yhs_A 446 TKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFARE 496 (503)
T ss_dssp ECGGGCSCCTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHCC-
T ss_pred EcCCCcccccHHHHHHHHHCCCEEEEecCCChhhcccCCHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999876
No 15
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=100.00 E-value=9.3e-37 Score=308.21 Aligned_cols=284 Identities=28% Similarity=0.442 Sum_probs=241.3
Q ss_pred HHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHH
Q 011076 5 QLGGSISRAIQQMS-NATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNEL 83 (494)
Q Consensus 5 ~l~~~l~~~~~~l~-~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL 83 (494)
...+.|. .+.++. |.+.+| +++.+++++.+|+++||+.+++.+|++++++.+..++ +++.+.+.++++++|
T Consensus 9 ~~~~~~~-~~~~~~~~~~~~~---~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l 80 (302)
T 3b9q_A 9 KTRENLA-VIDELLLFWNLAE---TDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGK----LKSGSEIKDALKESV 80 (302)
T ss_dssp HHHHHHT-HHHHHHTTCCGGG---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTS----CCSHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHcCCCcCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcC----CCCHHHHHHHHHHHH
Confidence 3445555 566665 467777 5678899999999999999999999999998776543 456788999999999
Q ss_pred HhhcCCCC--CCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceec
Q 011076 84 CKMLDPGK--PSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161 (494)
Q Consensus 84 ~~ll~~~~--~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~ 161 (494)
.+++++.. .++.+...++.+++++|++|||||||+++||.++...+.+|.+.+.|+||+++.+|+..++.+.+++++.
T Consensus 81 ~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~ 160 (302)
T 3b9q_A 81 LEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVV 160 (302)
T ss_dssp HHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEEC
T ss_pred HHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEE
Confidence 99998765 5666555667899999999999999999999999988999999999999999999999998888888877
Q ss_pred cCCC-CChHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHh------cCCCEEEEEecCCCcccHHHHHH
Q 011076 162 SYTE-SDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEA------TNPDLVIFVMDSSIGQAAFDQAQ 234 (494)
Q Consensus 162 ~~~~-~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~------~~~d~vllVvDa~~g~~~~~~~~ 234 (494)
.... .+|...+.+.+..+...++|++++||+|+.+..+.++.++.+...+ ..|+++++|+|++.|++...++.
T Consensus 161 q~~~~~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~~~ 240 (302)
T 3b9q_A 161 AEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAR 240 (302)
T ss_dssp CC--CCCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHHHH
T ss_pred ecCCccCHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHHHH
Confidence 6555 6787788888877665678999999999988777777777643332 25999999999999999999999
Q ss_pred HHhccCCeeEEEEeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccC
Q 011076 235 AFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 296 (494)
Q Consensus 235 ~f~~~~~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G 296 (494)
.|++..+++++|+||+|++.++|.+++++..++.||.|+++||.++|+++|+|+.++++++|
T Consensus 241 ~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~~dl~~f~~~~~~~~llg 302 (302)
T 3b9q_A 241 EFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS 302 (302)
T ss_dssp HHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHC
T ss_pred HHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 99877788999999999999999999999999999999999999999999999999999875
No 16
>2jqe_A SRP54, signal recognition 54 kDa protein; AF54, structure, solution, signaling protein; NMR {Archaeoglobus fulgidus}
Probab=100.00 E-value=3.8e-38 Score=272.79 Aligned_cols=112 Identities=40% Similarity=0.662 Sum_probs=99.2
Q ss_pred HhhhhcchhhHHHHHHHHHHHhccCChhHHhhcCC-CCCCccCcchhhhhhHHhHHhHhHhhcCCCHHhhcCCCCCCcch
Q 011076 320 LQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLP-GFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMND 398 (494)
Q Consensus 320 ~~~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~lP-g~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~i~~ 398 (494)
++++.+|+|||+||++|+++++||||+++|++||| |++ ..++..+.+.+++.++|++|||+|||++||++| .+|++
T Consensus 2 ~~k~~~g~Ftl~Df~~Ql~qi~kMG~l~~i~~MiP~G~~-~~~~~~~~~~~e~~lkr~~aII~SMT~~Er~~P--~ii~~ 78 (119)
T 2jqe_A 2 SGTMEKGTFTLKDIYKQIEAMNKMGPVRKIFEMLPFGLG-LKVDNDVMEMTQEKMKKFRVIMDSMTEEELLNP--KIIDS 78 (119)
T ss_dssp ---CCCCSSCTHHHHHHHTTCCCCCCCSCSSCCCCSCCC-SSCCCCSSCCCCCHHHHHHHHHHHSCHHHHHCG--GGCCH
T ss_pred hhHHHcCCcCHHHHHHHHHHHHhcCCHHHHHHHCccchh-hccchhhHhhhHHHHHHHHHHHHhCCHHHHhCh--hhcCH
Confidence 46888999999999999999999999999999999 997 422322234578899999999999999999986 88999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 011076 399 SRIMRIARGSGRQVREVMEMLEEYKRLAKIWSKMKG 434 (494)
Q Consensus 399 sr~~rIa~gsg~~~~~v~~ll~~~~~~~~~~~~~~~ 434 (494)
||++|||+||||+|+|||+||+||++|++|||+|++
T Consensus 79 SR~~RIA~GSG~~v~eVn~LLkqf~~m~kmmk~m~~ 114 (119)
T 2jqe_A 79 SRIRRIAIGSGTSPQEVKELLNYYKTMKNLMKKMKK 114 (119)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999976
No 17
>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A
Probab=100.00 E-value=2.6e-37 Score=261.86 Aligned_cols=105 Identities=28% Similarity=0.496 Sum_probs=73.2
Q ss_pred hhhHHHHHHHHHHHhccCChhHHhhcCCCCCCccCcchhhhhhHHhHHhHhHhhcCCCHHhhcCCCCCCcchHHHHHHHh
Q 011076 327 NFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIAR 406 (494)
Q Consensus 327 ~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~i~~sr~~rIa~ 406 (494)
+|||+||++|+++++||||+++|++||||++ .+......+.+++.++|++|||+|||++||++| .+|++||++|||+
T Consensus 1 ~F~l~Df~~Ql~qi~kMG~l~~i~~miPG~~-~~~~~~~~~~~~~~lkr~~aII~SMT~~Er~~P--~ii~~SR~~RIA~ 77 (105)
T 1hq1_A 1 GFDLNDFLEQLRQMKNMGGMASLMGKLPGMG-QIPDNVKSQMDDKVLVRMEAIINSMTMKERAKP--EIIKGSRKRRIAA 77 (105)
T ss_dssp CCCHHHHHHHHTC-----------------------------CCSSHHHHHHHHHTSCHHHHHCG--GGCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHCCCCC-cccchhhhhhhHHHHHHHHHHHHcCCHHHhhCh--hhcCHHHHHHHHc
Confidence 5999999999999999999999999999998 443222234578899999999999999999986 8899999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 011076 407 GSGRQVREVMEMLEEYKRLAKIWSKMKG 434 (494)
Q Consensus 407 gsg~~~~~v~~ll~~~~~~~~~~~~~~~ 434 (494)
||||+|+|||+||+||++|++|||+|++
T Consensus 78 GSG~~v~eVn~LLkqf~~m~kmmk~m~~ 105 (105)
T 1hq1_A 78 GSGMQVQDVNRLLKQFDDMQRMMKKMKK 105 (105)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999864
No 18
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=100.00 E-value=1.5e-36 Score=265.05 Aligned_cols=110 Identities=53% Similarity=0.901 Sum_probs=95.6
Q ss_pred hcchhhHHHHHHHHHHHhccCChhHHhhcCCCCCCcc-CcchhhhhhHHhHHhHhHhhcCCCHHhhcCCC-CCCc--chH
Q 011076 324 SEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSEL-MPKGREKESQAKIKRYMTMMDSMTNEELDSSN-PKLM--NDS 399 (494)
Q Consensus 324 ~~~~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~~-~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~-~~~i--~~s 399 (494)
..|+|||+||++|+++|+||||+++|++||||++ .. ++....+.++++++|++|||+|||++||++.+ |.+| ++|
T Consensus 11 ~~g~Ftl~Df~~Ql~qi~KMG~l~~im~MiPGm~-~~~~~~~~~~~~e~~lkr~eaII~SMT~~Er~n~~~P~ii~~~~S 89 (129)
T 1mfq_C 11 KHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFG-TDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPG 89 (129)
T ss_dssp CCSSCCHHHHHHHHHHTTSSHHHHHTTTTCSCC---------CCHHHHHHHHHHHHHHTTSCHHHHTCTTHHHHHHHCTH
T ss_pred ccCCcCHHHHHHHHHHHHHcCCHHHHHHHCCCCC-ccccchhhhhhhHHHHHHHHHHHHccCHHHHhcCCCcccccCChH
Confidence 4689999999999999999999999999999998 41 23333456788999999999999999999822 3889 999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 011076 400 RIMRIARGSGRQVREVMEMLEEYKRLAKIWSKMKG 434 (494)
Q Consensus 400 r~~rIa~gsg~~~~~v~~ll~~~~~~~~~~~~~~~ 434 (494)
|++|||+||||+|+|||+||+||++|++|||+|++
T Consensus 90 Rk~RIA~GSG~~v~eVn~LLkqf~qm~kmmKkm~~ 124 (129)
T 1mfq_C 90 RIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGG 124 (129)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999976
No 19
>1qb2_A SRP54, human signal recognition particle 54 KD protein; alpha-helix, helix-turn-helix, signaling protein; 2.10A {Homo sapiens} SCOP: a.36.1.1 PDB: 1ry1_W* 2go5_W
Probab=100.00 E-value=8.1e-36 Score=254.60 Aligned_cols=105 Identities=53% Similarity=0.924 Sum_probs=91.4
Q ss_pred hhhHHHHHHHHHHHhccCChhHHhhcCCCCCCc-cCcchhhhhhHHhHHhHhHhhcCCCHHhhcCCC-CCCcc--hHHHH
Q 011076 327 NFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSE-LMPKGREKESQAKIKRYMTMMDSMTNEELDSSN-PKLMN--DSRIM 402 (494)
Q Consensus 327 ~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~-~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~-~~~i~--~sr~~ 402 (494)
+|||+||++|+++++||||+++|++||||++ . +.+....+.++++++|++|||+|||++||++.+ |.+|+ +||++
T Consensus 1 ~Ftl~Df~~Ql~qi~kMG~l~~i~~MiPG~~-~~~~~~~~~~~~~~~lkr~~aII~SMT~~Er~~~~~P~ii~~~~SR~~ 79 (109)
T 1qb2_A 1 QFTLRDMYEQFQNIMKMGPFSQILGMIPGFG-TDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQ 79 (109)
T ss_dssp CCCHHHHHHHHHHHHHTHHHHHHHHHSTTSC-TTTTCTTCHHHHHHHHHHHHHHHTTSCHHHHHSTTTHHHHHHSTHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHCCCCc-ccccchhhhhhhHHHHHHHHHHHHcCCHHHHhcCCCccccccchHHHH
Confidence 5999999999999999999999999999998 4 313233446788999999999999999999822 37888 99999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHHHHh
Q 011076 403 RIARGSGRQVREVMEMLEEYKRLAKIWSKM 432 (494)
Q Consensus 403 rIa~gsg~~~~~v~~ll~~~~~~~~~~~~~ 432 (494)
|||+||||+|+|||+||+||++|++|||+|
T Consensus 80 RIA~GSG~~v~eVn~LLkqf~~m~kmmk~m 109 (109)
T 1qb2_A 80 RVARGSGVSTRDVQELLTQYTKFAQMVKKM 109 (109)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHC---
T ss_pred HHHccCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999875
No 20
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=100.00 E-value=1.4e-33 Score=284.11 Aligned_cols=259 Identities=23% Similarity=0.313 Sum_probs=209.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHH-HHhhchhhhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCe
Q 011076 24 DEKVLNECLNEITRALLQADVQFKLVREMQTNI-KKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPS 102 (494)
Q Consensus 24 ~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v-~~~~~~~~~~~~~~~~~~i~~~v~~eL~~ll~~~~~~~~~~~~~~~ 102 (494)
.+.++++.+++++.+|+++||+.+++.+|.+++ +..+... +.++ +.+.++++++|.+++++... ..+ ..++.
T Consensus 34 ~~~~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~l~~~l~~~~~-~~~-~~~g~ 106 (296)
T 2px0_A 34 YQSVLPEPLRKAEKLLQETGIKESTKTNTLKKLLRFSVEAG----GLTE-ENVVGKLQEILCDMLPSADK-WQE-PIHSK 106 (296)
T ss_dssp -----CCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHSSS----CCCT-TTHHHHHHHHHHTTSCCGGG-SCC-CCCSS
T ss_pred cccccHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhccc----CCCH-HHHHHHHHHHHHHHhCCccc-ccc-cCCCc
Confidence 344567889999999999999999999999999 4444332 3344 66889999999999976432 222 23467
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh-cCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~-~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
+|+|+|++||||||++.+||.++.. .|++|+++++|+||+++.+||..++...+++++.. .++.. ...++..+
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~---~~~~~-l~~al~~~-- 180 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVC---YTKEE-FQQAKELF-- 180 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBC---SSHHH-HHHHHHHG--
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEec---CCHHH-HHHHHHHh--
Confidence 9999999999999999999999985 79999999999999999999999999989887653 23433 34555544
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH-HHHHHhccCCeeEEEEeCccCCCCccchh
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD-QAQAFKQSVSVGAVIVTKMDGHAKGGGAL 260 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~-~~~~f~~~~~i~~vVltK~D~~~~~g~~l 260 (494)
.++|+|||||||+.+.+..++.++..+.....++.+++|+|++.+..... .+..|. .+++.++|+||+|.+.++|.++
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~-~l~~~giVltk~D~~~~~g~~~ 259 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFS-SVPVNQYIFTKIDETTSLGSVF 259 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTS-SSCCCEEEEECTTTCSCCHHHH
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHh-cCCCCEEEEeCCCcccchhHHH
Confidence 57999999999999888777777766544445889999999998754443 344454 4677899999999999999999
Q ss_pred HHHHhcCCCeEEecccccc-ccccccCccchhhcccC
Q 011076 261 SAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLG 296 (494)
Q Consensus 261 s~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G 296 (494)
++...+++||.|+++||++ +|+.+|+|..++++++|
T Consensus 260 ~~~~~~~~pi~~i~~ge~vp~dl~~f~~~~~~~~llg 296 (296)
T 2px0_A 260 NILAESKIGVGFMTNGQNVPEDIQTVSPLGFVRMLCR 296 (296)
T ss_dssp HHHHTCSCCCSEECCSSCTTTSCBCCCHHHHHHHHTC
T ss_pred HHHHHHCcCEEEEECCCCChHHHhcCCHHHHHHHHcC
Confidence 9999999999999999999 89999999999999886
No 21
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=99.92 E-value=6.5e-26 Score=177.21 Aligned_cols=64 Identities=31% Similarity=0.479 Sum_probs=60.4
Q ss_pred hhhHHhHHhHhHhhcCCCHHhhcCCCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHh
Q 011076 367 KESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREVMEMLEEYKRLAKIWSKM 432 (494)
Q Consensus 367 ~~~~~~~~~~~~ii~smt~~er~~~~~~~i~~sr~~rIa~gsg~~~~~v~~ll~~~~~~~~~~~~~ 432 (494)
+.+++.+++++|||+|||++||++| .+|++||++|||+||||+++|||+||+||++|++|||+|
T Consensus 6 ~~~e~~lkr~~aII~SMT~~Er~nP--~ii~~SR~~RIA~GSG~~v~eVn~Llkqf~~m~kmmk~m 69 (69)
T 1dul_A 6 FLEQKVLVRMEAIINSMTMKERAKP--EIIKGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM 69 (69)
T ss_dssp HHHCCHHHHHHHHHHTSCHHHHHCG--GGCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHcCCHHHHhCc--cccCHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 3567889999999999999999986 889999999999999999999999999999999999985
No 22
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.88 E-value=9.2e-24 Score=213.41 Aligned_cols=250 Identities=16% Similarity=0.222 Sum_probs=174.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHH
Q 011076 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (494)
Q Consensus 98 ~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~ 177 (494)
..++..|+++|.|||||||++|.|. |.++++++. .+.+++..+.... +
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~------g~~~~i~s~-----------~~~tT~~~~~~~~--~------------- 54 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLL------GTKVSIISP-----------KAGTTRMRVLGVK--N------------- 54 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHH------TSCCSCCCS-----------SSCCCCSCEEEEE--E-------------
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHh------CCCccccCC-----------CCCceeeEEEEEE--e-------------
Confidence 4457899999999999999999999 988887776 3445554432211 1
Q ss_pred HHhcc-CCcEEEEeCCCCCchh--HHHHHHHHHH--HHhcCCCEEEEEecCCCcccHH--HH-HHHHhccCCeeEEEEeC
Q 011076 178 TFKKE-NCDLIIVDTSGRHKQE--AALFEEMRQV--SEATNPDLVIFVMDSSIGQAAF--DQ-AQAFKQSVSVGAVIVTK 249 (494)
Q Consensus 178 ~~~~~-~~dvIIIDTaG~~~~~--~~l~~el~~i--~~~~~~d~vllVvDa~~g~~~~--~~-~~~f~~~~~i~~vVltK 249 (494)
.. +++++|+||||.+... ..+.+.+... .....+|.+++|+|++.+.... .. ...+...-.+..+|+||
T Consensus 55 ---~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK 131 (308)
T 3iev_A 55 ---IPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINK 131 (308)
T ss_dssp ---ETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEEC
T ss_pred ---cCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEEC
Confidence 12 6789999999996544 3343444322 2234689999999998654332 22 33443322234999999
Q ss_pred ccCCCCccchhHHHHhcCCCeEEeccccccc-cccccCccchhhcccCCCCchHHHHHHHHhCC-------CCCchHHHh
Q 011076 250 MDGHAKGGGALSAVAATKSPVIFIGTGEHMD-EFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP-------MDQQPELLQ 321 (494)
Q Consensus 250 ~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~-~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~-------~~~~~~~~~ 321 (494)
+|............ +.+. .+..+.+..++|+..|.| ++.|++.+.+.++ ++..++..+
T Consensus 132 ~Dl~~~~~~~~~~~-------------~~l~~~~~~~~~i~~vSA~~g~g-v~~L~~~l~~~l~~~~~~~~~~~~td~~~ 197 (308)
T 3iev_A 132 IDKIGPAKNVLPLI-------------DEIHKKHPELTEIVPISALKGAN-LDELVKTILKYLPEGEPLFPEDMITDLPL 197 (308)
T ss_dssp GGGSSSGGGGHHHH-------------HHHHHHCTTCCCEEECBTTTTBS-HHHHHHHHHHHSCBCCCSSCTTCCBCCCH
T ss_pred ccCCCCHHHHHHHH-------------HHHHHhccCCCeEEEEeCCCCCC-HHHHHHHHHHhCccCCCCCCcccccCCCH
Confidence 99863222222222 1121 223566778899999999 9999999999874 344566677
Q ss_pred hhhcchhhHHHHHHHHHHHhccCChhHHhhcCCCCCCccCcchhhhh--hH--HhHHhHhHhhcCCCHHhhcCCCCCCc-
Q 011076 322 KLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKE--SQ--AKIKRYMTMMDSMTNEELDSSNPKLM- 396 (494)
Q Consensus 322 ~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~~~~~~~~~~--~~--~~~~~~~~ii~smt~~er~~~~~~~i- 396 (494)
++...++.++.+++++++ ++||.. ++ .+ +++ .+ +...+|.|+|. +||++|++++|
T Consensus 198 ~~~~~e~irek~~~~~~~------------eiP~~~-~v--~i-~~~~~~~~~~~~~~i~a~i~----ve~~~~k~i~ig 257 (308)
T 3iev_A 198 RLLAAEIVREKAMMLTRE------------EVPTSI-AV--KI-NEIKPGDANPNMLVIKGEII----VDRENLKPIIIG 257 (308)
T ss_dssp HHHHHHHHHHHHHHTCCT------------THHHHC-EE--EE-EEEEECSSCTTSEEEEEEEE----ESSGGGHHHHHC
T ss_pred HHHHHHHHHHHHHhhhhh------------hcCCee-EE--Ee-EEEEEccCCCCeEEEEEEEE----EccCCcceEEEc
Confidence 888889999999998887 999975 34 22 222 12 35678999999 99999988877
Q ss_pred -chHHHHHHHhhcCCCHHHHHHHH
Q 011076 397 -NDSRIMRIARGSGRQVREVMEML 419 (494)
Q Consensus 397 -~~sr~~rIa~gsg~~~~~v~~ll 419 (494)
+|+++|+|+..|. +|+++|+
T Consensus 258 ~~g~~ik~i~~~ar---~~~~~~~ 278 (308)
T 3iev_A 258 KKGQRLKEIGKRAR---QELELIL 278 (308)
T ss_dssp GGGHHHHHHHHHHH---HHHHHHH
T ss_pred CCcHHHHHHHHHHH---HHHHHHh
Confidence 7999999999998 6666555
No 23
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.83 E-value=5.4e-22 Score=200.01 Aligned_cols=244 Identities=19% Similarity=0.193 Sum_probs=167.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.|||||||++|.|. |.++++++. .+.+++..+.... +
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~------g~~~~ivs~-----------~~~tTr~~i~~i~--~---------------- 51 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLL------GVKVAPISP-----------RPQTTRKRLRGIL--T---------------- 51 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------TSCCSCCCS-----------SSCCCCSCEEEEE--E----------------
T ss_pred CCEEEEECCCCCCHHHHHHHHh------CCceeeecC-----------CCCceeEEEEEEE--E----------------
Confidence 4679999999999999999999 888887766 3344444332111 1
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHH--HHhcCCCEEEEEecCCCcccHHH--HHHHHhc---cCCeeEEEEeCccCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQV--SEATNPDLVIFVMDSSIGQAAFD--QAQAFKQ---SVSVGAVIVTKMDGH 253 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i--~~~~~~d~vllVvDa~~g~~~~~--~~~~f~~---~~~i~~vVltK~D~~ 253 (494)
..++.++|+||||.+.....+.+.+... .....+|.+++|+|++.+....+ ....+.. ..|+ .+|+||+|..
T Consensus 52 ~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~-ilV~NK~Dl~ 130 (301)
T 1wf3_A 52 EGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPI-LLVGNKLDAA 130 (301)
T ss_dssp ETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCE-EEEEECGGGC
T ss_pred eCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCE-EEEEECcccC
Confidence 1257889999999976544444444322 23457899999999986543332 2233443 2444 9999999986
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC-------CCCc-hHHHhhhhc
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP-------MDQQ-PELLQKLSE 325 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~-------~~~~-~~~~~~~~~ 325 (494)
........... .+..|.+..++|+..|.| ++.|++.+.+.++ ++.. ++..+++..
T Consensus 131 ~~~~~~~~~~~----------------~~~~~~~~~~iSA~~g~g-v~~l~~~l~~~l~~~~~~y~~~~~~td~~~~~~~ 193 (301)
T 1wf3_A 131 KYPEEAMKAYH----------------ELLPEAEPRMLSALDERQ-VAELKADLLALMPEGPFFYPEDYAKSDQTFGEWV 193 (301)
T ss_dssp SSHHHHHHHHH----------------HTSTTSEEEECCTTCHHH-HHHHHHHHHTTCCBCCCSSCTTCCSBSSCHHHHH
T ss_pred CchHHHHHHHH----------------HhcCcCcEEEEeCCCCCC-HHHHHHHHHHhcccCCCCCCcccccCCCCHHHHH
Confidence 44221122221 123455667899999999 9999999988763 3334 556667777
Q ss_pred chhhHHHHHHHHHHHhccCChhHHhhcCCCCCCccCcchhhhhh--HHhHHhHhHhhcCCCHHhhcCCCCCCc--chHHH
Q 011076 326 GNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKES--QAKIKRYMTMMDSMTNEELDSSNPKLM--NDSRI 401 (494)
Q Consensus 326 ~~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~~~~~~~~~~~--~~~~~~~~~ii~smt~~er~~~~~~~i--~~sr~ 401 (494)
.+..++.+++++++ ++||.. .+ .+ +.+. ++...++.+.|. +||++|+.++| +|+++
T Consensus 194 ~e~~Re~~~~~l~~------------eiP~~~-~v--~i-~~~~~~~~~~~~i~~~i~----ve~~~~k~iiig~~g~~l 253 (301)
T 1wf3_A 194 AEILREEAMKRLWH------------EVPYAV-AT--KV-EEVAERENGVLYIKAILY----VERPSQKAIVIGEGGRKI 253 (301)
T ss_dssp HHHHHHHHHHTCCT------------THHHHC-EE--EE-EEEEEETTTEEEEEEEEE----ESSHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHhhc------------ccCceE-EE--EE-EEEEecCCCeEEEEEEEE----EeeCCceEEEEeCCchHH
Confidence 78888888888887 899865 33 22 2222 334567888888 99999987777 68999
Q ss_pred HHHHhhcCCCHHHHHHHHH
Q 011076 402 MRIARGSGRQVREVMEMLE 420 (494)
Q Consensus 402 ~rIa~gsg~~~~~v~~ll~ 420 (494)
|+|+..|. +|+++|+.
T Consensus 254 k~i~~~ar---~~~~~~~~ 269 (301)
T 1wf3_A 254 KEIGQATR---KQLEALLG 269 (301)
T ss_dssp HHHHHHHH---HHHHHHHT
T ss_pred HHHHHHHH---HHHHHHHC
Confidence 99999998 67666553
No 24
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.79 E-value=1.8e-20 Score=188.70 Aligned_cols=247 Identities=19% Similarity=0.198 Sum_probs=161.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
++.+|+++|+|||||||+++.|. |.++++++. .+.+++..+. +...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~------g~~~~i~s~-----------~~~tTr~~~~--gi~~--------------- 52 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLL------GQKISITSR-----------KAQTTRHRIV--GIHT--------------- 52 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHH------TCSEEECCC-----------CSSCCSSCEE--EEEE---------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHH------CCCccccCC-----------CCCcceeeEE--EEEE---------------
Confidence 35679999999999999999999 989887765 2334443321 1111
Q ss_pred hccCCcEEEEeCCCCC-chhHHHHHHHHHH-HH-hcCCCEEEEEecCCCcccHH--HHHHHHhccCCeeEEEEeCccCCC
Q 011076 180 KKENCDLIIVDTSGRH-KQEAALFEEMRQV-SE-ATNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~-~~~~~l~~el~~i-~~-~~~~d~vllVvDa~~g~~~~--~~~~~f~~~~~i~~vVltK~D~~~ 254 (494)
..++.++++||||.+ .....+.+.+... .. ...+|.+++|+|++. .... ..+..+...-.+..+|+||+|...
T Consensus 53 -~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 53 -EGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp -ETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred -ECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCc
Confidence 125678999999997 3333333333211 11 234788999999865 3222 233344332223489999999865
Q ss_pred CccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC-------CCCchHHHhhhhcch
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP-------MDQQPELLQKLSEGN 327 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~-------~~~~~~~~~~~~~~~ 327 (494)
.......... .+.+...+.+..++|+..|.| ++.|++.+.+.++ ++..++..+++...+
T Consensus 131 ~~~~~~~~l~-------------~l~~~~~~~~~i~iSA~~g~~-v~~l~~~i~~~l~~~~~~~~~~~~~d~~~~~~~~e 196 (301)
T 1ega_A 131 EKADLLPHLQ-------------FLASQMNFLDIVPISAETGLN-VDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASE 196 (301)
T ss_dssp CHHHHHHHHH-------------HHHTTSCCSEEEECCTTTTTT-HHHHHHHHHTTCCBCCCSSCTTCCSCCSHHHHHHH
T ss_pred cHHHHHHHHH-------------HHHHhcCcCceEEEECCCCCC-HHHHHHHHHHhCCcCCCCCCccccCCCCHHHHHHH
Confidence 2111222221 111111233567799999999 9999999998764 234455666777778
Q ss_pred hhHHHHHHHHHHHhccCChhHHhhcCCCCCCccCcchhhhhh--HHhHHhHhHhhcCCCHHhhcCCCCCCc--chHHHHH
Q 011076 328 FTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKES--QAKIKRYMTMMDSMTNEELDSSNPKLM--NDSRIMR 403 (494)
Q Consensus 328 f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~~~~~~~~~~~--~~~~~~~~~ii~smt~~er~~~~~~~i--~~sr~~r 403 (494)
..++.+++.+.+ ++||.. .+ .+ +.+. ++...++.|.|. +||++++.++| +|+|+|+
T Consensus 197 ~~re~l~~~l~~------------e~p~~~-~v--~i-~~~~~~~~~~~~i~~~i~----v~~~~~k~i~ig~~G~~~k~ 256 (301)
T 1ega_A 197 IIREKLMRFLGA------------ELPYSV-TV--EI-ERFVSNERGGYDINGLIL----VEREGQKKMVIGNKGAKIKT 256 (301)
T ss_dssp HHHHHHHHHHGG------------GCCTTE-EE--EE-EEEECCSSCSEEEEEEEE----ESSHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHhCC------------CCCeEE-EE--EE-EEEEecCCCeEEEEEEEE----EEECCceEEEECCCcHHHHH
Confidence 889999998887 999985 34 22 2221 234567888888 99999977777 7999999
Q ss_pred HHhhcCCCHHHHHHHH
Q 011076 404 IARGSGRQVREVMEML 419 (494)
Q Consensus 404 Ia~gsg~~~~~v~~ll 419 (494)
|+..|. .|+..|+
T Consensus 257 ig~~ar---~~i~~~~ 269 (301)
T 1ega_A 257 IGIEAR---KDMQEMF 269 (301)
T ss_dssp HHHHHH---HHHHHHT
T ss_pred HHHHHH---HHHHHHH
Confidence 999987 6665554
No 25
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.68 E-value=8.4e-17 Score=165.47 Aligned_cols=191 Identities=18% Similarity=0.204 Sum_probs=115.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcch---hHH----HHHhhhhccCcceeccCCCCC---hH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG---AFD----QLKQNATKAKIPFYGSYTESD---PV 169 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~---a~~----qLk~~~~~~~i~~~~~~~~~d---p~ 169 (494)
++.+|+|+|.|||||||++++|+.++...|++|+++++|+..+. ++. .+.......++.+....+... ..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 45789999999999999999999999999999999999986653 211 111122222333322222211 12
Q ss_pred HHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhccCCeeEEEEeC
Q 011076 170 RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTK 249 (494)
Q Consensus 170 ~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~~i~~vVltK 249 (494)
....+.+..+...+++++||||||.......+ ...+|.+++|+|+..+.........+. ..+ .++|+||
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~~~~~~---------~~~aD~vl~V~d~~~~~~~~~l~~~~~-~~p-~ivVlNK 226 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQSEVAV---------ANMVDTFVLLTLARTGDQLQGIKKGVL-ELA-DIVVVNK 226 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSSHHHHH---------HTTCSEEEEEEESSTTCTTTTCCTTSG-GGC-SEEEEEC
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCcHHHHH---------HHhCCEEEEEECCCCCccHHHHHHhHh-hcC-CEEEEEC
Confidence 33455566666678999999999987643322 246899999999876543211111111 123 4999999
Q ss_pred ccCCCCccchhHHHHhcCCCeEEeccccccccc-----cccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 250 MDGHAKGGGALSAVAATKSPVIFIGTGEHMDEF-----EVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 250 ~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l-----~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
+|.....+... ...... +.+..+ ....|..++|++.|.| ++.|++.+.+.++
T Consensus 227 ~Dl~~~~~~~~-~~~~l~---------~~l~~~~~~~~~~~~~vi~iSA~~g~G-i~~L~~~i~~~~~ 283 (355)
T 3p32_A 227 ADGEHHKEARL-AARELS---------AAIRLIYPREALWRPPVLTMSAVEGRG-LAELWDTVERHRQ 283 (355)
T ss_dssp CCGGGHHHHHH-HHHHHH---------HHHHHHSTTCCSCCCCEEEEBGGGTBS-HHHHHHHHHHHHH
T ss_pred CCCcChhHHHH-HHHHHH---------HHHhhccccccCCCCceEEEEcCCCCC-HHHHHHHHHHHHH
Confidence 99864322111 110000 000001 1124667899999999 9999999988764
No 26
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.59 E-value=3.2e-16 Score=166.70 Aligned_cols=232 Identities=14% Similarity=0.149 Sum_probs=134.6
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHHHhhc
Q 011076 8 GSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKML 87 (494)
Q Consensus 8 ~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL~~ll 87 (494)
...+.|+++++| .++..+.+|+..|++.-..+++..+|.+.+ +......+ ...+..+.+++..++
T Consensus 148 ~~~~~a~~~l~g-------~~~~~~~~~r~~l~~~~a~iEa~iDf~ed~-~~~~~~~~-------~~~i~~l~~~l~~~~ 212 (462)
T 3geh_A 148 QAAQTALAGLQG-------KLAHPIRQLRANCLDILAEIEARIDFEEDL-PPLDDEAI-------ISDIENIAAEISQLL 212 (462)
T ss_dssp HHHHHHHHHHHT-------TTHHHHHHHHHHHHHHHHHHHHHTTSSSSS-CCCCTTTH-------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhch-------hHHHHHHHHHHHHHHHHHHHHhhccccccC-ChhhHHHH-------HHHHHHHHHHHHHHH
Confidence 467889999999 688889999999999988888888886621 11111111 233466777777776
Q ss_pred CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCC
Q 011076 88 DPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESD 167 (494)
Q Consensus 88 ~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~d 167 (494)
.........+. ...|+++|.|||||||++|.|+ +.+.++++.- + .+++.-+.
T Consensus 213 ~~~~~~~~~r~--~~kV~ivG~~nvGKSSLln~L~------~~~~a~v~~~---~--------gtT~d~~~--------- 264 (462)
T 3geh_A 213 ATKDKGELLRT--GLKVAIVGRPNVGKSSLLNAWS------QSDRAIVTDL---P--------GTTRDVVE--------- 264 (462)
T ss_dssp TTHHHHHHHHH--CEEEEEEECTTSSHHHHHHHHH------HHHBSCCSCC---T--------TCCHHHHH---------
T ss_pred HHhhhhhhhcC--CCEEEEEcCCCCCHHHHHHHHh------CCCcccccCC---C--------CeeEEEEE---------
Confidence 54322211222 3459999999999999999999 4444443331 1 11111110
Q ss_pred hHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHH-HHH-HHhcCCCEEEEEecCCCcccHHH--HHHHHhccCCee
Q 011076 168 PVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEM-RQV-SEATNPDLVIFVMDSSIGQAAFD--QAQAFKQSVSVG 243 (494)
Q Consensus 168 p~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el-~~i-~~~~~~d~vllVvDa~~g~~~~~--~~~~f~~~~~i~ 243 (494)
......++++.|+||||.....+...... ... .....+|.+++|+|++.+....+ ....+.. .| .
T Consensus 265 ---------~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~-~p-i 333 (462)
T 3geh_A 265 ---------SQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH-RP-L 333 (462)
T ss_dssp ---------HEEEETTEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT-SC-E
T ss_pred ---------EEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC-Cc-E
Confidence 00111367889999999865432222211 111 12346899999999987544332 2233322 34 4
Q ss_pred EEEEeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 244 AVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 244 ~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
.+|+||+|....... +.+.++....+...+|+..|.| ++.|++.+.+.+.
T Consensus 334 ivV~NK~Dl~~~~~~------------------~~~~~~~~~~~~i~iSAktg~G-i~eL~~~i~~~~~ 383 (462)
T 3geh_A 334 ILVMNKIDLVEKQLI------------------TSLEYPENITQIVHTAAAQKQG-IDSLETAILEIVQ 383 (462)
T ss_dssp EEEEECTTSSCGGGS------------------TTCCCCTTCCCEEEEBTTTTBS-HHHHHHHHHHHHT
T ss_pred EEEEECCCCCcchhh------------------HHHHHhccCCcEEEEECCCCCC-HHHHHHHHHHHHh
Confidence 899999998643211 0111222334567799999999 9999999988764
No 27
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.58 E-value=1e-16 Score=171.16 Aligned_cols=234 Identities=16% Similarity=0.181 Sum_probs=124.5
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHHHhhc
Q 011076 8 GSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKML 87 (494)
Q Consensus 8 ~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL~~ll 87 (494)
...+.|+++|+| .++..+.+|+..|++.-..+++..||.++..+......+ ...+..+.++|..++
T Consensus 156 ~~~~~a~~~l~G-------~ls~~i~~lr~~L~~~~a~iea~iDf~eedi~~~~~~~l-------~~~i~~l~~~l~~~~ 221 (476)
T 3gee_A 156 SAYRTAVSQMKG-------DLSVRLGGLREQLIRSCALIELELDFSEEDVEFQSRDEL-------TMQIETLRSEVNRLI 221 (476)
T ss_dssp HHHHHHHHHHHT-------HHHHHHHHHHTHHHHHHHTTTTCSSCCSSCCSSSCHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCC-------cHHHHHHHHHHHHHHHHHHhheecCCCcccccchhHHHH-------HHHHHHHHHHHHHHH
Confidence 467889999999 899999999999999877777777775531111111111 112344455555554
Q ss_pred CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCC
Q 011076 88 DPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESD 167 (494)
Q Consensus 88 ~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~d 167 (494)
.........+. ...|+++|.|||||||++|+|+ +.++++++. .+.+++.-+.....
T Consensus 222 ~~~~~~~~~r~--~~kV~ivG~~nvGKSSLln~L~------~~~~a~vs~-----------~~gtT~d~~~~~i~----- 277 (476)
T 3gee_A 222 DSYQHGRIVSE--GVSTVIAGKPNAGKSTLLNTLL------GQERAIVSH-----------MPGTTRDYIEECFI----- 277 (476)
T ss_dssp HHHHHHHHHHH--CEEEEEECCTTSSHHHHHHHCC-----------------------------------CEEEE-----
T ss_pred HHHHhhHhhcC--CCEEEEECCCCCCHHHHHHHHh------CCCCcccCC-----------CCCceEEEEEEEEE-----
Confidence 32211111111 3459999999999999999999 766666665 23333332211111
Q ss_pred hHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHH-H-HHHHhcCCCEEEEEecCCCcccH------HHHHHHHhcc
Q 011076 168 PVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEM-R-QVSEATNPDLVIFVMDSSIGQAA------FDQAQAFKQS 239 (494)
Q Consensus 168 p~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el-~-~i~~~~~~d~vllVvDa~~g~~~------~~~~~~f~~~ 239 (494)
..++++.|+||||.....+...... . .......+|.+++|+|++.+... ......+. .
T Consensus 278 -------------~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~-~ 343 (476)
T 3gee_A 278 -------------HDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP-A 343 (476)
T ss_dssp -------------ETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT-T
T ss_pred -------------ECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC-C
Confidence 1367899999999865432222211 1 11224468999999999876432 11222222 2
Q ss_pred CCeeEEEEeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 240 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 240 ~~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
. +..+|+||+|....... .. +.+.+. .+.+...+|++.|.| ++.|++.+.+.+.
T Consensus 344 ~-piIvV~NK~Dl~~~~~~--~~--------------~~l~~~-~~~~~i~vSAktg~G-I~eL~~~i~~~~~ 397 (476)
T 3gee_A 344 A-KFLTVANKLDRAANADA--LI--------------RAIADG-TGTEVIGISALNGDG-IDTLKQHMGDLVK 397 (476)
T ss_dssp S-EEEEEEECTTSCTTTHH--HH--------------HHHHHH-HTSCEEECBTTTTBS-HHHHHHHHTHHHH
T ss_pred C-CEEEEEECcCCCCccch--hH--------------HHHHhc-CCCceEEEEECCCCC-HHHHHHHHHHHHh
Confidence 3 34899999998654321 11 001111 124557789999999 9999999988764
No 28
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.55 E-value=1.4e-14 Score=141.01 Aligned_cols=206 Identities=17% Similarity=0.173 Sum_probs=109.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchh-------------HHHHHhhhhccCcceecc-CCC
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-------------FDQLKQNATKAKIPFYGS-YTE 165 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a-------------~~qLk~~~~~~~i~~~~~-~~~ 165 (494)
++.+++++|.+||||||++++|+.+++ .|++|++|++|++.... .+.........+..+... ...
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL 91 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence 457788899999999999999999999 99999999999874321 110000000000000000 000
Q ss_pred CChHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHh-cCCCEEEEEecCCCcccHHHHHH--------HH
Q 011076 166 SDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEA-TNPDLVIFVMDSSIGQAAFDQAQ--------AF 236 (494)
Q Consensus 166 ~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~-~~~d~vllVvDa~~g~~~~~~~~--------~f 236 (494)
........+.+..+. .+||++||||||...... .......+... .. +.+++|+|++...+..+... ..
T Consensus 92 ~~~~~~l~~~l~~~~-~~~d~iiiDtpG~~~~~~-~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~ 168 (262)
T 1yrb_A 92 MEKFNEYLNKILRLE-KENDYVLIDTPGQMETFL-FHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL 168 (262)
T ss_dssp HTTHHHHHHHHHHHH-HHCSEEEEECCSSHHHHH-HSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHh-hcCCEEEEeCCCccchhh-hhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc
Confidence 011122333444443 368999999999864321 10001112222 34 78999999876544333211 11
Q ss_pred hccCCeeEEEEeCccCCCCccc--hhHHHHhcC--------CCe--EE--eccccccccccccCccchhhcccCCCCchH
Q 011076 237 KQSVSVGAVIVTKMDGHAKGGG--ALSAVAATK--------SPV--IF--IGTGEHMDEFEVFDVKPFVSRLLGMGDWSG 302 (494)
Q Consensus 237 ~~~~~i~~vVltK~D~~~~~g~--~ls~~~~~g--------~Pi--~f--i~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~ 302 (494)
....++ .+|+||+|....... +........ .|- .| ++..+.+.++.+..+..++|+..|.| ++.
T Consensus 169 ~~~~p~-~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~g-i~~ 246 (262)
T 1yrb_A 169 RLGATT-IPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREG-FED 246 (262)
T ss_dssp HHTSCE-EEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTT-HHH
T ss_pred ccCCCe-EEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCccc-HHH
Confidence 123454 799999998643210 011100000 000 00 00000012222233557789999999 999
Q ss_pred HHHHHHHhC
Q 011076 303 FMDKIHEVV 311 (494)
Q Consensus 303 L~e~i~~~~ 311 (494)
|++.+.+.+
T Consensus 247 l~~~i~~~~ 255 (262)
T 1yrb_A 247 LETLAYEHY 255 (262)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999887765
No 29
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.54 E-value=2.3e-14 Score=146.56 Aligned_cols=190 Identities=17% Similarity=0.116 Sum_probs=106.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHH-HH------hhhhccCcceeccCCCC---ChH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQ-LK------QNATKAKIPFYGSYTES---DPV 169 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~q-Lk------~~~~~~~i~~~~~~~~~---dp~ 169 (494)
+..+|+++|++|+||||+++.|+..+...|.+|++++.|++++..... +. .+....+..+....+.. ...
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~ 134 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGAS 134 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchhH
Confidence 457899999999999999999999999889999999999987642110 10 00000111111111111 011
Q ss_pred HHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhccCCeeEEEEeC
Q 011076 170 RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTK 249 (494)
Q Consensus 170 ~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~~i~~vVltK 249 (494)
.-..+.+..+...+++++||||||........ ...+|.+++|+|++.+... ..........+ ..+|+||
T Consensus 135 ~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~~---------~~~aD~vl~Vvd~~~~~~~-~~l~~~~~~~p-~ivv~NK 203 (341)
T 2p67_A 135 QRARELMLLCEAAGYDVVIVETVGVGQSETEV---------ARMVDCFISLQIAGGGDDL-QGIKKGLMEVA-DLIVINK 203 (341)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEECCTTHHHHH---------HTTCSEEEEEECC-------CCCCHHHHHHC-SEEEECC
T ss_pred HHHHHHHHHhhccCCCEEEEeCCCccchHHHH---------HHhCCEEEEEEeCCccHHH-HHHHHhhhccc-CEEEEEC
Confidence 11223334444568999999999987643221 2578999999999755321 10000001123 3899999
Q ss_pred ccCCCCccchhHHHHhcCCCeEEecccccccccc-----ccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 250 MDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFE-----VFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 250 ~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~-----~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
+|...... +........ +.+..+. .+.+..++|+..|.| ++.|++.+.+.+
T Consensus 204 ~Dl~~~~~-~~~~~~~l~---------~~l~~~~~~~~~~~~~vi~iSA~~g~g-i~~L~~~l~~~~ 259 (341)
T 2p67_A 204 DDGDNHTN-VAIARHMYE---------SALHILRRKYDEWQPRVLTCSALEKRG-IDEIWHAIIDFK 259 (341)
T ss_dssp CCTTCHHH-HHHHHHHHH---------HHHHHSCCSBTTBCCEEEECBGGGTBS-HHHHHHHHHHHH
T ss_pred CCCCChHH-HHHHHHHHH---------HHHHhccccccCCCCcEEEeeCCCCCC-HHHHHHHHHHHH
Confidence 99864211 111110000 0000011 134556799999999 999999998765
No 30
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.54 E-value=3.3e-14 Score=145.93 Aligned_cols=187 Identities=18% Similarity=0.182 Sum_probs=103.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchh-------HHHHHhhhhccCcceeccC-------CCC
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-------FDQLKQNATKAKIPFYGSY-------TES 166 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a-------~~qLk~~~~~~~i~~~~~~-------~~~ 166 (494)
..+|+|+|+|||||||++|.|+.++...+.+|+++..|++.... ...+..++....+-+.... +..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr 153 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTR 153 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchH
Confidence 56899999999999999999999998889999999999986632 1122222221221111100 111
Q ss_pred ChHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhccCCeeEEE
Q 011076 167 DPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVI 246 (494)
Q Consensus 167 dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~~i~~vV 246 (494)
+ ..+++..+...+++++|+||||..+....+ ...+|.+++|+|++.+.+.......+. ..+ ..+|
T Consensus 154 ~----~~~~~~~~~~~~~~~iliDT~Gi~~~~~~l---------~~~~d~vl~V~d~~~~~~~~~i~~~il-~~~-~ivV 218 (349)
T 2www_A 154 T----TNEAILLCEGAGYDIILIETVGVGQSEFAV---------ADMVDMFVLLLPPAGGDELQGIKRGII-EMA-DLVA 218 (349)
T ss_dssp T----HHHHHHHHHHTTCSEEEEECCCC--CHHHH---------HTTCSEEEEEECCC------------C-CSC-SEEE
T ss_pred H----HHHHHHhhccCCCCEEEEECCCcchhhhhH---------HhhCCEEEEEEcCCcchhHHHhHHHHH-hcC-CEEE
Confidence 1 223333444568999999999986543222 236899999999986643211111111 123 4889
Q ss_pred EeCccCCCCccch--hH-HHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 247 VTKMDGHAKGGGA--LS-AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 247 ltK~D~~~~~g~~--ls-~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
+||+|.....+.. .. +...... + .........+..++|++.|.| ++.|++.+.+.+
T Consensus 219 lNK~Dl~~~~~~~~~~~~l~~~l~~-~-------~~~a~~~~~~vi~iSA~~g~G-i~~L~~~I~~~~ 277 (349)
T 2www_A 219 VTKSDGDLIVPARRIQAEYVSALKL-L-------RKRSQVWKPKVIRISARSGEG-ISEMWDKMKDFQ 277 (349)
T ss_dssp ECCCSGGGHHHHHHHHHHHHHHHTT-C-------C-----CCCEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred EeeecCCCchhHHHHHHHHHHHHHh-c-------CccccCCCceEEEEecCCCCC-HHHHHHHHHHHH
Confidence 9999985322111 01 1100000 0 000001123456799999999 999999998875
No 31
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.47 E-value=3.5e-15 Score=159.40 Aligned_cols=230 Identities=17% Similarity=0.182 Sum_probs=135.6
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHHHhhcC
Q 011076 9 SISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLD 88 (494)
Q Consensus 9 ~l~~~~~~l~~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL~~ll~ 88 (494)
++..++++++| .+...++.|+..|+..-..++...+|.++ .+..... + ...+..+..+|..++.
T Consensus 169 ~~~~a~~~l~g-------~l~~~~~~~r~~l~~~~~~ie~~idf~ee-i~~~~~~-i-------~~~~~~l~~eL~~l~~ 232 (482)
T 1xzp_A 169 SLKLSLRNLKG-------GLRDFVDSLRRELIEVLAEIRVELDYPDE-IETNTGE-V-------VTRLERIKEKLTEELK 232 (482)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHHHHHHHHSTTT-CCCCHHH-H-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcch-------hHhHHHHHHHHHHHHHHHHhhhcCCCCcc-ccchHHH-H-------HHHHHHHHHHHHHHHH
Confidence 56788899988 78889999999998876667777677553 1100000 1 1223455666666554
Q ss_pred CCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCCh
Q 011076 89 PGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDP 168 (494)
Q Consensus 89 ~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp 168 (494)
........+. ...|+++|.|||||||++|.|+ +.+.++++. .+.++++-+.....
T Consensus 233 ~~~~~~~~r~--~~kV~ivG~pnvGKSSLln~L~------~~~~a~vs~-----------~~gTT~d~~~~~i~------ 287 (482)
T 1xzp_A 233 KADAGILLNR--GLRMVIVGKPNVGKSTLLNRLL------NEDRAIVTD-----------IPGTTRDVISEEIV------ 287 (482)
T ss_dssp HHHHHHHHHH--CEEEEEECCHHHHTCHHHHHHH------HHTBCCCCC-----------SSCCSSCSCCEEEE------
T ss_pred hhhhhhhccC--CCEEEEECcCCCcHHHHHHHHH------CCCCCccCC-----------CCCeeeeeEEEEEe------
Confidence 3211111111 3469999999999999999999 555555554 22334332221111
Q ss_pred HHHHHHHHHHHhccCCcEEEEeCCCCC-chhHHHHHH-H-HHHHHhcCCCEEEEEecCCCcccHH--HHHHHHhccCCee
Q 011076 169 VRIAVEGVETFKKENCDLIIVDTSGRH-KQEAALFEE-M-RQVSEATNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVG 243 (494)
Q Consensus 169 ~~i~~~~l~~~~~~~~dvIIIDTaG~~-~~~~~l~~e-l-~~i~~~~~~d~vllVvDa~~g~~~~--~~~~~f~~~~~i~ 243 (494)
..+++++|+||||.. ...+..... + ........+|.+++|+|++.+.... +....+ ...|+
T Consensus 288 ------------~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l-~~~pi- 353 (482)
T 1xzp_A 288 ------------IRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI-KNKRY- 353 (482)
T ss_dssp ------------ETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH-TTSSE-
T ss_pred ------------cCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh-cCCCE-
Confidence 125678999999986 432110000 0 0112234689999999997654322 222222 23444
Q ss_pred EEEEeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 244 AVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 244 ~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.+|+||+|..... ...... + . +....+...+|++.|.| ++.|++.+.+.+
T Consensus 354 ivV~NK~DL~~~~--~~~~~~------------~-~--~~~~~~~i~iSAktg~G-i~eL~~~l~~~~ 403 (482)
T 1xzp_A 354 LVVINKVDVVEKI--NEEEIK------------N-K--LGTDRHMVKISALKGEG-LEKLEESIYRET 403 (482)
T ss_dssp EEEEEECSSCCCC--CHHHHH------------H-H--HTCSTTEEEEEGGGTCC-HHHHHHHHHHHT
T ss_pred EEEEECccccccc--CHHHHH------------H-H--hcCCCcEEEEECCCCCC-HHHHHHHHHHHH
Confidence 9999999985431 111111 0 0 01113556789999999 999999998865
No 32
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.47 E-value=9.1e-14 Score=131.68 Aligned_cols=180 Identities=13% Similarity=0.191 Sum_probs=108.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCC---CCChHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYT---ESDPVRIAVEGVE 177 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~---~~dp~~i~~~~l~ 177 (494)
..+|+++|.+||||||++++|+..+... +++++|+.|++.......+.. .++++..... ..-......+.+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVSKADYERVRR----FGIKAEAISTGKECHLDAHMIYHRLK 104 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCCHHHHHHHHT----TTCEEEECCCTTCSSCCHHHHHTTGG
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCCchhHHHHHh----CCCcEEEecCCceeecccHHHHHHHH
Confidence 4679999999999999999999888665 899999999976533333332 2222111111 0111111222222
Q ss_pred HHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHH-HHHHhccCCeeEEEEeCccCCCCc
Q 011076 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ-AQAFKQSVSVGAVIVTKMDGHAKG 256 (494)
Q Consensus 178 ~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~-~~~f~~~~~i~~vVltK~D~~~~~ 256 (494)
...++|++|+||+|....... ....++.+++|+|++.+...... ...+ ..+. .+|+||+|.....
T Consensus 105 --~~~~~d~iiidt~G~~~~~~~---------~~~~~~~~i~vvd~~~~~~~~~~~~~~~--~~~~-iiv~NK~Dl~~~~ 170 (221)
T 2wsm_A 105 --KFSDCDLLLIENVGNLICPVD---------FDLGENYRVVMVSVTEGDDVVEKHPEIF--RVAD-LIVINKVALAEAV 170 (221)
T ss_dssp --GGTTCSEEEEEEEEBSSGGGG---------CCCSCSEEEEEEEGGGCTTHHHHCHHHH--HTCS-EEEEECGGGHHHH
T ss_pred --hcCCCCEEEEeCCCCCCCCch---------hccccCcEEEEEeCCCcchhhhhhhhhh--hcCC-EEEEecccCCcch
Confidence 335799999999995321110 01246789999999876533221 2222 2343 8999999974321
Q ss_pred cchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 257 g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
........ +.+..+.+..+...+|+..|.| ++.|++.+.+.+.
T Consensus 171 ~~~~~~~~------------~~~~~~~~~~~i~~~Sa~~g~g-i~~l~~~l~~~~~ 213 (221)
T 2wsm_A 171 GADVEKMK------------ADAKLINPRAKIIEMDLKTGKG-FEEWIDFLRGILN 213 (221)
T ss_dssp TCCHHHHH------------HHHHHHCTTSEEEECBTTTTBT-HHHHHHHHHHHHC
T ss_pred hhHHHHHH------------HHHHHhCCCCeEEEeecCCCCC-HHHHHHHHHHHHH
Confidence 11111111 1112222334567789999999 9999999987663
No 33
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.45 E-value=2.4e-13 Score=138.87 Aligned_cols=191 Identities=18% Similarity=0.191 Sum_probs=108.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchh-------HHHHHhhhhccCcceeccCCCCC---hH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-------FDQLKQNATKAKIPFYGSYTESD---PV 169 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a-------~~qLk~~~~~~~i~~~~~~~~~d---p~ 169 (494)
+..+++++|+|||||||+++.|+.++...+.+|++++.|++.... ...+.......+........... ..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~t 133 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVA 133 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchH
Confidence 356899999999999999999999998888999999999864321 00000011111111111111111 11
Q ss_pred HHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhccCCeeEEEEeC
Q 011076 170 RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTK 249 (494)
Q Consensus 170 ~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~~i~~vVltK 249 (494)
....+++..+...++|++||||||..+.+..+ ...+|.+++|+|+..+.+.........+ . ...+|+||
T Consensus 134 r~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v---------~~~~d~vl~v~d~~~~~~~~~i~~~i~~-~-~~ivvlNK 202 (337)
T 2qm8_A 134 AKTRETMLLCEAAGFDVILVETVGVGQSETAV---------ADLTDFFLVLMLPGAGDELQGIKKGIFE-L-ADMIAVNK 202 (337)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSSSSCHHHH---------HTTSSEEEEEECSCC------CCTTHHH-H-CSEEEEEC
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCcchhhH---------HhhCCEEEEEEcCCCcccHHHHHHHHhc-c-ccEEEEEc
Confidence 22344444455579999999999998754322 2367999999998754321100000111 1 23778899
Q ss_pred ccCCCCccchhHHHHhcCCCeEEeccccccccccc-----cCccchhhcccCCCCchHHHHHHHHhC
Q 011076 250 MDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEV-----FDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 250 ~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~-----f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
+|................ ..+.-+.+ +.+..++|++.|.| ++.|++.+.+..
T Consensus 203 ~Dl~~~~~~s~~~~~~l~---------~a~~l~~~~~~~~~~~vl~~Sal~g~g-i~~L~~~I~~~~ 259 (337)
T 2qm8_A 203 ADDGDGERRASAAASEYR---------AALHILTPPSATWTPPVVTISGLHGKG-LDSLWSRIEDHR 259 (337)
T ss_dssp CSTTCCHHHHHHHHHHHH---------HHHTTBCCSBTTBCCCEEEEBTTTTBS-HHHHHHHHHHHH
T ss_pred hhccCchhHHHHHHHHHH---------HHHHhccccccCCCCCEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 996432111111110000 00000111 23556799999999 999999998875
No 34
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.42 E-value=1.5e-12 Score=130.38 Aligned_cols=118 Identities=14% Similarity=0.087 Sum_probs=69.2
Q ss_pred CCcEEEEeCCCCCchh-----HHHHHHHH--HHHHhcCCCEEEEEecC-CCc---ccHHHHHHHHhccCCeeEEEEeCcc
Q 011076 183 NCDLIIVDTSGRHKQE-----AALFEEMR--QVSEATNPDLVIFVMDS-SIG---QAAFDQAQAFKQSVSVGAVIVTKMD 251 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~-----~~l~~el~--~i~~~~~~d~vllVvDa-~~g---~~~~~~~~~f~~~~~i~~vVltK~D 251 (494)
+++++|+||||..... ..+...+. .......+|.+++|+|+ +.+ .+....+..+...-.+..+|+||+|
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~D 209 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLD 209 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTT
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcc
Confidence 4789999999987421 11111222 11223478999999997 333 2223445555433234589999999
Q ss_pred CCCCccchhHHHHhcCCCeEEeccccccccc-cccCccchhhccc---CCCCchHHHHHHHHhCCC
Q 011076 252 GHAKGGGALSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLL---GMGDWSGFMDKIHEVVPM 313 (494)
Q Consensus 252 ~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l-~~f~p~~~vs~~~---G~Gdi~~L~e~i~~~~~~ 313 (494)
............. +....+ ..|.|...+|+.. |.| +..+++.+.+.++.
T Consensus 210 l~~~~~~~~~~~~------------~~~~~~~~~~~~v~~~sa~~~~~~~g-v~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 210 LMDKGTDAMEVLT------------GRVIPLTLGFIGVINRSQEDIIAKKS-IRESLKSEILYFKN 262 (315)
T ss_dssp SSCSSCCCHHHHT------------TSSSCCTTCEEECCCCCHHHHSSSCC-HHHHHHHHHHHHHT
T ss_pred cCCcchHHHHHHh------------CCCccCCCCeEEEecCChhhhccCCC-HHHHHHHHHHHHhC
Confidence 8755433333332 111111 2345666677777 788 99999998888754
No 35
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.38 E-value=5.6e-12 Score=124.90 Aligned_cols=143 Identities=13% Similarity=0.058 Sum_probs=78.3
Q ss_pred CCcEEEEeCCCCCch-----hHH---HHHHHHHHHHhcCCCEE-EEEecCCCcccH---HHHHHHHhccCCeeEEEEeCc
Q 011076 183 NCDLIIVDTSGRHKQ-----EAA---LFEEMRQVSEATNPDLV-IFVMDSSIGQAA---FDQAQAFKQSVSVGAVIVTKM 250 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~-----~~~---l~~el~~i~~~~~~d~v-llVvDa~~g~~~---~~~~~~f~~~~~i~~vVltK~ 250 (494)
.+++.|+||||.... .+. ....+. ......++.+ ++|+|++.+... ...+..+...-.+..+|+||+
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~ 202 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDML-MQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKL 202 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHH-HHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECG
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHH-HHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEcc
Confidence 378999999998531 111 222221 1122345554 479999764322 233444433223359999999
Q ss_pred cCCCCccchhHHHHhcCCCeEEecccccccccc-ccCccchhhcccCCCCchHHHHHHHHhC----CCCCchHHHhh---
Q 011076 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHEVV----PMDQQPELLQK--- 322 (494)
Q Consensus 251 D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~-~f~p~~~vs~~~G~Gdi~~L~e~i~~~~----~~~~~~~~~~~--- 322 (494)
|............. .....+. .+.+...+|+..|.| ++.|++.+.+.. +.+..++...+
T Consensus 203 Dl~~~~~~~~~~~~------------~~~~~~~~~~~~v~~~SA~~~~g-i~~l~~~l~~~~~~~~~~~~~~~~~~r~~~ 269 (299)
T 2aka_B 203 DLMDEGTDARDVLE------------NKLLPLRRGYIGVVNRSQKDIDG-KKDITAALAAERKFFLSHPSYRHLADRMGT 269 (299)
T ss_dssp GGSCTTCCCHHHHT------------TCSSCCTTCEEECCCCCCBCTTS-CBCHHHHHHHHHHHHHHCTTTGGGGGGCSH
T ss_pred ccCCCCchHHHHHh------------CCcCcCCCCcEEEECCChhhccc-cccHHHHHHHHHHHHhcCCccccchhhhCH
Confidence 98654322222221 1111111 234667799999999 999998876632 22333334344
Q ss_pred hhcchhhHHHHHHHHHH
Q 011076 323 LSEGNFTLRIMYEQFQN 339 (494)
Q Consensus 323 ~~~~~f~~~d~~~ql~~ 339 (494)
..-.++..+.++.++++
T Consensus 270 ~~l~~~l~~~l~~~~~~ 286 (299)
T 2aka_B 270 PYLQKVLNQQLTNHIRD 286 (299)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33345666666666666
No 36
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=99.36 E-value=9.6e-12 Score=116.20 Aligned_cols=151 Identities=23% Similarity=0.184 Sum_probs=93.7
Q ss_pred eEEEEE-cCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 102 SVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 102 ~vI~lv-G~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
++|+|+ +..|+||||++.+||.+|+++|++|++|++|++..... .+. ....++++..... ....+.+..+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~-~~~--~~~~~~~~~~~~~-----~~l~~~l~~l~ 73 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTN-WSK--AGKAAFDVFTAAS-----EKDVYGIRKDL 73 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH-HHT--TSCCSSEEEECCS-----HHHHHTHHHHT
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHH-HHh--cCCCCCcEEecCc-----HHHHHHHHHhc
Confidence 467787 55699999999999999999999999999998765432 111 1223444444222 33445555554
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc-HHHHHHHHhc------cCCeeEEEEeCccCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA-AFDQAQAFKQ------SVSVGAVIVTKMDGH 253 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~-~~~~~~~f~~------~~~i~~vVltK~D~~ 253 (494)
..||+|||||||..... .. .....+|.+++|+++..... .......+.+ .+++ ++|+|++|..
T Consensus 74 -~~yD~viiD~~~~~~~~--~~------~~l~~ad~viiv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~vv~N~~~~~ 143 (206)
T 4dzz_A 74 -ADYDFAIVDGAGSLSVI--TS------AAVMVSDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEA-RFLITRKIEM 143 (206)
T ss_dssp -TTSSEEEEECCSSSSHH--HH------HHHHHCSEEEEEECSCTTTHHHHHHHHHHHTTSCGGGCCEE-EEEECSBCTT
T ss_pred -CCCCEEEEECCCCCCHH--HH------HHHHHCCEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCcE-EEEEeccCCC
Confidence 46999999999887321 11 11223789999998864322 2223333322 2345 9999999964
Q ss_pred CCc-cchhHHHHhcCCCe
Q 011076 254 AKG-GGALSAVAATKSPV 270 (494)
Q Consensus 254 ~~~-g~~ls~~~~~g~Pi 270 (494)
... ..+.......+.|+
T Consensus 144 ~~~~~~~~~~l~~~~~~v 161 (206)
T 4dzz_A 144 ATMLNVLKESIKDTGVKA 161 (206)
T ss_dssp EEEEHHHHHHHHHHTCCB
T ss_pred chHHHHHHHHHHHcCCce
Confidence 432 22334444445444
No 37
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.36 E-value=1.3e-12 Score=137.87 Aligned_cols=157 Identities=22% Similarity=0.303 Sum_probs=87.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|.|||||||++|.|+ |.+.++++. .+.+++....... . .
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~------~~~~~~v~~-----------~~g~T~d~~~~~~--~----------------~ 48 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIA------GERISIVED-----------TPGVTRDRIYSSA--E----------------W 48 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHE------EEECC----------------------CEEEEC--T----------------T
T ss_pred CEEEEECCCCCCHHHHHHHHh------CCCceeecC-----------CCCCccceEEEEE--E----------------E
Confidence 369999999999999999999 877777765 3344444332111 1 1
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHH--HHhcCCCEEEEEecCCCcccHHH--HHHHHhccCCeeEEEEeCccCCCCcc
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQV--SEATNPDLVIFVMDSSIGQAAFD--QAQAFKQSVSVGAVIVTKMDGHAKGG 257 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i--~~~~~~d~vllVvDa~~g~~~~~--~~~~f~~~~~i~~vVltK~D~~~~~g 257 (494)
.+.++.|+||||....+..+.+++... .....+|.+++|+|++.+....+ .+..+...-.+..+|+||+|......
T Consensus 49 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~ 128 (436)
T 2hjg_A 49 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA 128 (436)
T ss_dssp CSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----
T ss_pred CCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh
Confidence 256789999999864333333344322 22346899999999987654433 33334333233499999999864311
Q ss_pred chhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 258 ~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
.+ .....+ .+.+...+|+..|.| +.+|++.+.+.++
T Consensus 129 ~~-----------------~~~~~l-g~~~~~~iSA~~g~g-v~~L~~~i~~~l~ 164 (436)
T 2hjg_A 129 NI-----------------YDFYSL-GFGEPYPISGTHGLG-LGDLLDAVAEHFK 164 (436)
T ss_dssp CC-----------------CSSGGG-SSCCCEECBTTTTBT-HHHHHHHHHHTGG
T ss_pred hH-----------------HHHHHc-CCCCeEEEeCcCCCC-hHHHHHHHHHhcC
Confidence 10 001111 122446789999999 9999999988875
No 38
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=99.35 E-value=3.6e-11 Score=120.68 Aligned_cols=148 Identities=18% Similarity=0.173 Sum_probs=95.8
Q ss_pred CCeEEEEEcC-CCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhh---------------------hhccCc
Q 011076 100 KPSVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQN---------------------ATKAKI 157 (494)
Q Consensus 100 ~~~vI~lvG~-~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~---------------------~~~~~i 157 (494)
.+++|+|+|. +|+||||++.+||..|++.|+||++|++|+.++.....+... ....++
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l 182 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGF 182 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETTTTE
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCCCCE
Confidence 3568999986 699999999999999999999999999999876654332110 011234
Q ss_pred ceeccCC-CCChHHH-----HHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCc-cc-H
Q 011076 158 PFYGSYT-ESDPVRI-----AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-QA-A 229 (494)
Q Consensus 158 ~~~~~~~-~~dp~~i-----~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g-~~-~ 229 (494)
.+..... ..+|.++ ..+.++.++ ..||+||||||+.....+.. ..+..+|.+++|+.+... .. .
T Consensus 183 ~vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~-------~l~~~ad~vilV~~~~~~~~~~~ 254 (299)
T 3cio_A 183 DVITRGQVPPNPSELLMRDRMRQLLEWAN-DHYDLVIVDTPPMLAVSDAA-------VVGRSVGTSLLVARFGLNTAKEV 254 (299)
T ss_dssp EEECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCTHHH-------HHGGGCSEEEEEEETTTSCTTHH
T ss_pred EEEECCCCCCCHHHHhCHHHHHHHHHHHH-hCCCEEEEcCCCCchhHHHH-------HHHHHCCEEEEEEcCCCChHHHH
Confidence 4333221 2344432 334455554 57999999999987543221 112347899999987643 22 2
Q ss_pred HHHHHHHhc-cCCeeEEEEeCccCCCC
Q 011076 230 FDQAQAFKQ-SVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 230 ~~~~~~f~~-~~~i~~vVltK~D~~~~ 255 (494)
....+.+.. ..++.++|+|++|....
T Consensus 255 ~~~~~~l~~~~~~~~GvVlN~~~~~~~ 281 (299)
T 3cio_A 255 SLSMQRLEQAGVNIKGAILNGVIKRAS 281 (299)
T ss_dssp HHHHHHHHHTTCCCCCEEEEECCCCCS
T ss_pred HHHHHHHHhCCCCeEEEEEeCCccCCC
Confidence 333444443 35667999999997543
No 39
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.34 E-value=2.1e-12 Score=122.00 Aligned_cols=166 Identities=17% Similarity=0.148 Sum_probs=95.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCc-eEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWK-PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~k-VaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
...|+++|.+||||||+++.|. +.+ ++.++..+ .+++. +.++....
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~------~~~~~~~~~~~~-----------~~t~~-~~~~~~~~--------------- 75 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLC------NQKRLAFASKTP-----------GRTQH-INYFSVGP--------------- 75 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHT------TCSSSSCTTCCC-----------CSCCC-EEEEEESC---------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHh------CCCcceeecCCC-----------Ccccc-eEEEEecC---------------
Confidence 4579999999999999999998 554 33333211 11111 11111110
Q ss_pred hccCCcEEEEeCCCCCch------hHHHHHHHHHHHH-hcCCCEEEEEecCCCcccHH--HHHHHHhcc-CCeeEEEEeC
Q 011076 180 KKENCDLIIVDTSGRHKQ------EAALFEEMRQVSE-ATNPDLVIFVMDSSIGQAAF--DQAQAFKQS-VSVGAVIVTK 249 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~------~~~l~~el~~i~~-~~~~d~vllVvDa~~g~~~~--~~~~~f~~~-~~i~~vVltK 249 (494)
..++.+.|+||||.... .+.....+..... ...+|.+++|+|++.+.... .....+... .+ ..+|+||
T Consensus 76 -~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK 153 (223)
T 4dhe_A 76 -AAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKP-IHSLLTK 153 (223)
T ss_dssp -TTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCC-EEEEEEC
T ss_pred -CCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEec
Confidence 12578999999997542 1112222222222 33468899999998653322 233444433 44 4899999
Q ss_pred ccCCCCccc--hhHHHHhcCCCeEEeccccccccc-----cccCccchhhcccCCCCchHHHHHHHHhCCCC
Q 011076 250 MDGHAKGGG--ALSAVAATKSPVIFIGTGEHMDEF-----EVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMD 314 (494)
Q Consensus 250 ~D~~~~~g~--~ls~~~~~g~Pi~fi~~Ge~i~~l-----~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~~ 314 (494)
+|....... ...... +.+..+ ....+...+|++.|.| ++.|++.+.+.++..
T Consensus 154 ~Dl~~~~~~~~~~~~~~------------~~l~~~~~~~~~~~~~~~~~SA~~g~g-v~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 154 CDKLTRQESINALRATQ------------KSLDAYRDAGYAGKLTVQLFSALKRTG-LDDAHALIESWLRPA 212 (223)
T ss_dssp GGGSCHHHHHHHHHHHH------------HHHHHHHHHTCCSCEEEEEEBTTTTBS-HHHHHHHHHHHHC--
T ss_pred cccCChhhHHHHHHHHH------------HHHHhhhhcccCCCCeEEEeecCCCcC-HHHHHHHHHHhcCcc
Confidence 998643211 011110 111111 2344567799999999 999999999988644
No 40
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=99.34 E-value=5.7e-11 Score=118.54 Aligned_cols=148 Identities=19% Similarity=0.234 Sum_probs=95.4
Q ss_pred CCeEEEEEcC-CCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHH------------hhh---------hccCc
Q 011076 100 KPSVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK------------QNA---------TKAKI 157 (494)
Q Consensus 100 ~~~vI~lvG~-~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk------------~~~---------~~~~i 157 (494)
++++|+|++. +|+||||++.+||..|++.|++|++|++|+.++.....+. ... ...++
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~l 170 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAKF 170 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTTCHHHHHHTSSCTTTTCEECSSTTE
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCCCHHHHccCCCCHHHheeccCCCCE
Confidence 3568888865 6999999999999999999999999999998875543221 100 01233
Q ss_pred ceeccCC-CCChHHH-----HHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCc-ccHH
Q 011076 158 PFYGSYT-ESDPVRI-----AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-QAAF 230 (494)
Q Consensus 158 ~~~~~~~-~~dp~~i-----~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g-~~~~ 230 (494)
.+..... ..+|.++ ..+.++.++ ..||+||||||+.....+.. ..+..+|.+++|+.+... ....
T Consensus 171 ~vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~da~-------~l~~~aD~vllVv~~~~~~~~~~ 242 (286)
T 3la6_A 171 DLIPRGQVPPNPSELLMSERFAELVNWAS-KNYDLVLIDTPPILAVTDAA-------IVGRHVGTTLMVARYAVNTLKEV 242 (286)
T ss_dssp EEECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCTHHH-------HHTTTCSEEEEEEETTTSBHHHH
T ss_pred EEEeCCCCCCCHHHHhchHHHHHHHHHHH-hCCCEEEEcCCCCcchHHHH-------HHHHHCCeEEEEEeCCCCcHHHH
Confidence 3333222 2344443 334445544 47999999999987543221 123357999999998743 2222
Q ss_pred -HHHHHHhc-cCCeeEEEEeCccCCCC
Q 011076 231 -DQAQAFKQ-SVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 231 -~~~~~f~~-~~~i~~vVltK~D~~~~ 255 (494)
...+.+.. ..++.++|+|++|....
T Consensus 243 ~~~~~~l~~~g~~~~GvVlN~v~~~~~ 269 (286)
T 3la6_A 243 ETSLSRFEQNGIPVKGVILNSIFRRAS 269 (286)
T ss_dssp HHHHHHHHHTTCCCCEEEEEEECCCCC
T ss_pred HHHHHHHHhCCCCEEEEEEcCcccccc
Confidence 23344433 25677999999986543
No 41
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=99.33 E-value=3.5e-11 Score=119.11 Aligned_cols=147 Identities=16% Similarity=0.212 Sum_probs=92.8
Q ss_pred CCeEEEEEcC-CCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhh---------------------hhccCc
Q 011076 100 KPSVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQN---------------------ATKAKI 157 (494)
Q Consensus 100 ~~~vI~lvG~-~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~---------------------~~~~~i 157 (494)
.+++|+|++. +|+||||++.+||..|++.|+||++|++|+.++.....+... ....++
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l 160 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIEDL 160 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHHTTSSCHHHHEEECSSTTE
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHhCCCCCHHHcEEeCCCCCE
Confidence 3568999876 799999999999999999999999999999887654322110 001234
Q ss_pred ceeccCC-CCChHHH-----HHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc-cHH
Q 011076 158 PFYGSYT-ESDPVRI-----AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ-AAF 230 (494)
Q Consensus 158 ~~~~~~~-~~dp~~i-----~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~-~~~ 230 (494)
.+..... ..+|.++ ..+.++.++ ..||+||||||+.....+.. .+. ..+|.+++|+.+.... ...
T Consensus 161 ~vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~-----~l~--~~aD~vilVv~~~~~~~~~~ 232 (271)
T 3bfv_A 161 DVLTSGPIPPNPSELITSRAFANLYDTLL-MNYNFVIIDTPPVNTVTDAQ-----LFS--KFTGNVVYVVNSENNNKDEV 232 (271)
T ss_dssp EEECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCSHHH-----HHH--HHHCEEEEEEETTSCCHHHH
T ss_pred EEEECCCCCCCHHHHhChHHHHHHHHHHH-hCCCEEEEeCCCCchHHHHH-----HHH--HHCCEEEEEEeCCCCcHHHH
Confidence 4333222 2344443 334455554 47999999999976533211 011 1358899999986432 222
Q ss_pred -HHHHHHhc-cCCeeEEEEeCccCCC
Q 011076 231 -DQAQAFKQ-SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 231 -~~~~~f~~-~~~i~~vVltK~D~~~ 254 (494)
...+.+.. ..++.++|+|++|...
T Consensus 233 ~~~~~~l~~~~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 233 KKGKELIEATGAKLLGVVLNRMPKDK 258 (271)
T ss_dssp HHHHHHHHTTTCEEEEEEEEEECC--
T ss_pred HHHHHHHHhCCCCEEEEEEeCCcCCC
Confidence 23334433 3456799999999653
No 42
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.31 E-value=2.2e-11 Score=135.88 Aligned_cols=145 Identities=12% Similarity=0.023 Sum_probs=92.5
Q ss_pred CCcEEEEeCCCCCchh--------HHHHHHHHHHHHhcCCCEEEEEecCCCcc---cHHHHHHHHhccCCeeEEEEeCcc
Q 011076 183 NCDLIIVDTSGRHKQE--------AALFEEMRQVSEATNPDLVIFVMDSSIGQ---AAFDQAQAFKQSVSVGAVIVTKMD 251 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~--------~~l~~el~~i~~~~~~d~vllVvDa~~g~---~~~~~~~~f~~~~~i~~vVltK~D 251 (494)
..+++||||||+.... .....++..-.....+|.+++|+|++.+. +....+..+...-.+..+|+||+|
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiD 228 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 228 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTT
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcc
Confidence 4579999999987621 12222222111124678999999998642 222455555543334599999999
Q ss_pred CCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh---CC----CCCchHHHhhhh
Q 011076 252 GHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV---VP----MDQQPELLQKLS 324 (494)
Q Consensus 252 ~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~---~~----~~~~~~~~~~~~ 324 (494)
...+......+.. + +...-...|.+..++|+..|.| ++.|++.+.+. ++ -+...+...++.
T Consensus 229 lv~~~~~~~~il~--~---------~~~~l~lg~~~VV~iSA~~G~G-vdeL~eaI~~e~~ffpe~P~yd~ltDr~g~~~ 296 (772)
T 3zvr_A 229 LMDEGTDARDVLE--N---------KLLPLRRGYIGVVNRSQKDIDG-KKDITAALAAERKFFLSHPSYRHLADRMGTPY 296 (772)
T ss_dssp SSCTTCCSHHHHT--T---------CSSCCSSCEEECCCCCCEESSS-SEEHHHHHHHHHHHHHHCTTTGGGGGGCSHHH
T ss_pred cCCcchhhHHHHH--H---------HhhhhhccCCceEEeccccccc-chhHHHHHHHHHHhccCCcchhhhhhcccHHH
Confidence 9766543333321 0 1111012456778899999999 99999998862 31 234456666777
Q ss_pred cchhhHHHHHHHHHH
Q 011076 325 EGNFTLRIMYEQFQN 339 (494)
Q Consensus 325 ~~~f~~~d~~~ql~~ 339 (494)
-.++..+.+++++++
T Consensus 297 LaEiLrEkL~~hi~~ 311 (772)
T 3zvr_A 297 LQKVLNQQLTNHIRD 311 (772)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 778899999999988
No 43
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.30 E-value=7.3e-12 Score=132.00 Aligned_cols=187 Identities=16% Similarity=0.221 Sum_probs=105.9
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccC
Q 011076 77 QAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAK 156 (494)
Q Consensus 77 ~~v~~eL~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~ 156 (494)
..+.+++.+.+...... .....+..|+++|.|||||||++|+|. |.....++. .+.+++.-
T Consensus 153 ~~L~~~i~~~l~~~~~~--~~~~~~~ki~lvG~~nvGKSSLin~l~------~~~~~~~~~-----------~~gtT~d~ 213 (436)
T 2hjg_A 153 GDLLDAVAEHFKNIPET--KYNEEVIQFCLIGRPNVGKSSLVNAML------GEERVIVSN-----------VAGTTRDA 213 (436)
T ss_dssp HHHHHHHHHTGGGCCSS--CCCTTCEEEEEECSTTSSHHHHHHHHH------TSTTEEEC--------------------
T ss_pred HHHHHHHHHhcCccccc--cccccCcEEEEEcCCCCCHHHHHHHHh------CCCceeecC-----------CCCceeee
Confidence 44566666665422111 112335679999999999999999999 777766665 33344332
Q ss_pred cceeccCCCCChHHHHHHHHHHHhccCCcEEEEeCCCCCchhH-----HHHHHHHHHHHhcCCCEEEEEecCCCcccHHH
Q 011076 157 IPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEA-----ALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD 231 (494)
Q Consensus 157 i~~~~~~~~~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~-----~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~ 231 (494)
+..... ..+..+.|+||||...... +....+..+.....+|.+++|+|++.+....+
T Consensus 214 ~~~~~~------------------~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~ 275 (436)
T 2hjg_A 214 VDTSFT------------------YNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQD 275 (436)
T ss_dssp CCEEEE------------------ETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHH
T ss_pred eEEEEE------------------ECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHH
Confidence 211110 1245689999999742211 11222333334446899999999987654332
Q ss_pred --HHHHHhccCCeeEEEEeCccCCCCccchhH-HHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHH
Q 011076 232 --QAQAFKQSVSVGAVIVTKMDGHAKGGGALS-AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIH 308 (494)
Q Consensus 232 --~~~~f~~~~~i~~vVltK~D~~~~~g~~ls-~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~ 308 (494)
.+....+.-....+|+||+|.......... +..... +.+. .....|..++|++.|.| ++.|++.+.
T Consensus 276 ~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~---------~~l~-~~~~~~~~~~SA~tg~~-v~~l~~~i~ 344 (436)
T 2hjg_A 276 KRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIR---------DHFQ-FLDYAPILFMSALTKKR-IHTLMPAII 344 (436)
T ss_dssp HHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHH---------HHCG-GGTTSCEEECCTTTCTT-GGGHHHHHH
T ss_pred HHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHH---------Hhcc-cCCCCCEEEEecccCCC-HHHHHHHHH
Confidence 233233322334899999998654321111 111000 1111 11245678899999999 999999998
Q ss_pred HhC
Q 011076 309 EVV 311 (494)
Q Consensus 309 ~~~ 311 (494)
+.+
T Consensus 345 ~~~ 347 (436)
T 2hjg_A 345 KAS 347 (436)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
No 44
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=99.30 E-value=3.7e-11 Score=120.20 Aligned_cols=163 Identities=15% Similarity=0.122 Sum_probs=94.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhH-----------HHHHh------------h--hh
Q 011076 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-----------DQLKQ------------N--AT 153 (494)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~-----------~qLk~------------~--~~ 153 (494)
..+++|+|+|..|+||||++.+||.+|+++|++|++|++|++..... +.+.. . ..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~l~~~~~~~l~d~l~~~~~~~~~~~~~~~i~~~ 118 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFEG 118 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEEC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHHHHhCccCCCCHHHHHhhccccccCCCHHHhhccC
Confidence 34678999999999999999999999999999999999999663321 11111 0 01
Q ss_pred ccCcceeccCCC------CChH-HHHHHHHHHH-hccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011076 154 KAKIPFYGSYTE------SDPV-RIAVEGVETF-KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSI 225 (494)
Q Consensus 154 ~~~i~~~~~~~~------~dp~-~i~~~~l~~~-~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~ 225 (494)
..++.+.+.... .... .-....+..+ ....|||||||||+....... ......+|.+++|+++..
T Consensus 119 ~~~l~vlp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~ViiD~p~~~~~~~~-------~~~l~~aD~viiv~~~~~ 191 (307)
T 3end_A 119 FNGVMCVEAGGPPAGTGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGF-------AAPLQHADQAVVVTANDF 191 (307)
T ss_dssp GGGCEEEECCCCCSSSSCTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGG-------GGGGGTCSEEEEEECSSH
T ss_pred CCCceEEECCCcccccccchhhhHHHHHHHHhhhccccCCEEEEeCCCccchHHH-------HHHHHHCCEEEEEecCcH
Confidence 123333321110 0111 1111223331 235799999999887643210 012346899999998763
Q ss_pred c--ccHHHHHHHHhc-----cCCeeEEEEeCccCCCCccchhHHHHhcCCCeE
Q 011076 226 G--QAAFDQAQAFKQ-----SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVI 271 (494)
Q Consensus 226 g--~~~~~~~~~f~~-----~~~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~ 271 (494)
. .........+.. .+++.++|+|+++.. ..+-.+....+.|+.
T Consensus 192 ~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~---~~~~~~~~~~g~~v~ 241 (307)
T 3end_A 192 DSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT---DEVDRFCKETNFRRL 241 (307)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC---HHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH---HHHHHHHHHcCCCce
Confidence 2 122222333332 244568999999853 223344445666654
No 45
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.30 E-value=7.1e-12 Score=124.09 Aligned_cols=158 Identities=18% Similarity=0.142 Sum_probs=94.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||++|.|. |.+ ..++.. +.++.... .... .
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~------g~~-~~v~~~-----------~g~t~~~~--~~~~----------------~ 46 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLT------GSR-QRVGNW-----------AGVTVERK--EGQF----------------S 46 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH------TTC-EEEEEC-----------TTSSSEEE--EEEE----------------E
T ss_pred ccEEEEECCCCCCHHHHHHHHh------CCC-cccCCC-----------CCeeEEEE--EEEE----------------E
Confidence 3569999999999999999998 766 344431 11121111 1100 0
Q ss_pred ccCCcEEEEeCCCCCchh-----HHHHHHHH-HHHHhcCCCEEEEEecCCCcccHHHHHHHHhc-cCCeeEEEEeCccCC
Q 011076 181 KENCDLIIVDTSGRHKQE-----AALFEEMR-QVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQ-SVSVGAVIVTKMDGH 253 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~-----~~l~~el~-~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~-~~~i~~vVltK~D~~ 253 (494)
..+.++.|+||||..... ..+.+.+. .......+|.+++|+|++...........+.+ ..|+ .+|+||+|..
T Consensus 47 ~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~-ivv~NK~Dl~ 125 (274)
T 3i8s_A 47 TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPC-IVALNMLDIA 125 (274)
T ss_dssp CSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCE-EEEEECHHHH
T ss_pred eCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHhcCCCE-EEEEECccch
Confidence 125688999999986533 12222222 22233579999999999864333333333333 3454 9999999975
Q ss_pred CCccc---hhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCCCC
Q 011076 254 AKGGG---ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMD 314 (494)
Q Consensus 254 ~~~g~---~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~~ 314 (494)
...+. ...+....+ .|...+|+..|.| ++.|++.+.+.++.+
T Consensus 126 ~~~~~~~~~~~l~~~lg------------------~~~i~~SA~~g~g-i~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 126 EKQNIRIEIDALSARLG------------------CPVIPLVSTRGRG-IEALKLAIDRYKANE 170 (274)
T ss_dssp HHTTEEECHHHHHHHHT------------------SCEEECCCGGGHH-HHHHHHHHHTCCCCC
T ss_pred hhhhHHHHHHHHHHhcC------------------CCEEEEEcCCCCC-HHHHHHHHHHHHhcC
Confidence 33211 111111122 2456678888888 899998888877543
No 46
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=99.29 E-value=4.7e-11 Score=116.92 Aligned_cols=146 Identities=18% Similarity=0.115 Sum_probs=86.8
Q ss_pred CeEEEEE-cCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhh---------------hccCcceeccCC
Q 011076 101 PSVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNA---------------TKAKIPFYGSYT 164 (494)
Q Consensus 101 ~~vI~lv-G~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~---------------~~~~i~~~~~~~ 164 (494)
+++|+|+ +..|+||||++.+||.+|+++|++|++|++|++.+.....+.... ...++.+.+...
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~vlp~~~ 97 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNARIAVSAEGLEPVLTQKYGIKVMSMQF 97 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCCSCCCEEETTEEECEECTTTCCEEECGGG
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHhcCCCccccccccCccccccCCCCeEEEeccc
Confidence 4577777 556999999999999999999999999999999875533322110 011122221110
Q ss_pred ----CC------Ch--HHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc--cHH
Q 011076 165 ----ES------DP--VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAF 230 (494)
Q Consensus 165 ----~~------dp--~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~--~~~ 230 (494)
.. .+ .....+.+..+....||||||||||...... + .......+|.+++|+.+.... ...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~-~-----~~~~~~~aD~viiv~~~~~~s~~~~~ 171 (262)
T 2ph1_A 98 LLPKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAP-L-----TVMQDAKPTGVVVVSTPQELTAVIVE 171 (262)
T ss_dssp GSTTCSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHH-H-----HHHHHHCCSEEEEEECSSSCCHHHHH
T ss_pred cCCCcccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHH-H-----HHHhhccCCeEEEEecCccchHHHHH
Confidence 00 01 1223333333333689999999998764321 1 111222579999999876432 122
Q ss_pred HHHHHHhc-cCCeeEEEEeCccC
Q 011076 231 DQAQAFKQ-SVSVGAVIVTKMDG 252 (494)
Q Consensus 231 ~~~~~f~~-~~~i~~vVltK~D~ 252 (494)
.....+.+ .+++.++|+|++|.
T Consensus 172 ~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 172 KAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp HHHHHHHTTTCCEEEEEETTCCE
T ss_pred HHHHHHHhCCCCEEEEEECCCcc
Confidence 22333332 35667899999984
No 47
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=99.29 E-value=1e-10 Score=111.82 Aligned_cols=160 Identities=17% Similarity=0.215 Sum_probs=94.2
Q ss_pred eEEEEEc-CCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhH-------------HHHHhhhh---------ccCcc
Q 011076 102 SVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-------------DQLKQNAT---------KAKIP 158 (494)
Q Consensus 102 ~vI~lvG-~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~-------------~qLk~~~~---------~~~i~ 158 (494)
++|+|++ ..|+||||++.+||.+|+++|++|++|++|++.+... +.+..... ..++.
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~l~ 82 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDNVY 82 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSSTTEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhHhcCCCCCCCCHHHHhcCCCCHHHHhhcCCCCCEE
Confidence 5677775 5699999999999999999999999999999754322 22211000 02232
Q ss_pred eeccCCCCCh-----HHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc--cHHH
Q 011076 159 FYGSYTESDP-----VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFD 231 (494)
Q Consensus 159 ~~~~~~~~dp-----~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~--~~~~ 231 (494)
+.+.....+. .....+.+..++ ..||+||||||+..... . ......+|.+++|+++.... ....
T Consensus 83 ~lp~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~~~--~------~~~~~~ad~vi~v~~~~~~~~~~~~~ 153 (237)
T 1g3q_A 83 VLPGAVDWEHVLKADPRKLPEVIKSLK-DKFDFILIDCPAGLQLD--A------MSAMLSGEEALLVTNPEISCLTDTMK 153 (237)
T ss_dssp EECCCCSHHHHHHCCGGGHHHHHHTTG-GGCSEEEEECCSSSSHH--H------HHHHTTCSEEEEEECSCHHHHHHHHH
T ss_pred EEeCCCccchhhhcCHHHHHHHHHHHH-hcCCEEEEECCCCcCHH--H------HHHHHHCCeEEEEecCCcccHHHHHH
Confidence 2221110001 122334444444 57999999999876522 1 12234678999999886421 1222
Q ss_pred HHHHHhc-cCCeeEEEEeCccCCCCccchhHHHHhcCCCe
Q 011076 232 QAQAFKQ-SVSVGAVIVTKMDGHAKGGGALSAVAATKSPV 270 (494)
Q Consensus 232 ~~~~f~~-~~~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi 270 (494)
....+.+ ..++.++|+|+++..........+....+.|+
T Consensus 154 ~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~~~~~~~ 193 (237)
T 1g3q_A 154 VGIVLKKAGLAILGFVLNRYGRSDRDIPPEAAEDVMEVPL 193 (237)
T ss_dssp HHHHHHHTTCEEEEEEEEEETSCTTCCCHHHHHHHHCSCE
T ss_pred HHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHhCccc
Confidence 3333332 24567999999997544322333444456554
No 48
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=99.29 E-value=2.4e-11 Score=116.71 Aligned_cols=162 Identities=14% Similarity=0.082 Sum_probs=94.6
Q ss_pred CCeEEEEEcC-CCCcHHHHHHHHHHHHHhc-CCceEEEEcccCcchhHHH-------------HHhh-------------
Q 011076 100 KPSVIMFVGL-QGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQ-------------LKQN------------- 151 (494)
Q Consensus 100 ~~~vI~lvG~-~GvGKTTl~~kLA~~l~~~-g~kVaiVs~D~~r~~a~~q-------------Lk~~------------- 151 (494)
..++|+|++. .|+||||++.+||.+|++. |++|++|++|++++..... +...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 82 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDTMVQ 82 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHHHHSE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHHHHhE
Confidence 3568888854 6999999999999999998 9999999999884433211 1110
Q ss_pred hhccCcceeccCCCCCh-----HHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCc
Q 011076 152 ATKAKIPFYGSYTESDP-----VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG 226 (494)
Q Consensus 152 ~~~~~i~~~~~~~~~dp-----~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g 226 (494)
....++.+.+....... .....+.+..++ ..||+||||||+...... ......+|.+++|+.+...
T Consensus 83 ~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~~~--------~~~l~~ad~viiv~~~~~~ 153 (245)
T 3ea0_A 83 HISPSLDLIPSPATFEKIVNIEPERVSDLIHIAA-SFYDYIIVDFGASIDHVG--------VWVLEHLDELCIVTTPSLQ 153 (245)
T ss_dssp EEETTEEEECCCSSHHHHHHCCHHHHHHHHHHHH-HHCSEEEEEEESSCCTTH--------HHHGGGCSEEEEEECSSHH
T ss_pred ecCCCeEEEcCCCChHhhhcCCHHHHHHHHHHHH-hhCCEEEEeCCCCCchHH--------HHHHHHCCEEEEEecCcHH
Confidence 01123333332111000 122344454444 479999999988764321 1223458999999988632
Q ss_pred c--cHHHHHHHHhc---cCCeeEEEEeCccCCCCccchhHHHHhcCCCeE
Q 011076 227 Q--AAFDQAQAFKQ---SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVI 271 (494)
Q Consensus 227 ~--~~~~~~~~f~~---~~~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~ 271 (494)
. ......+.+.. .....++|+|+++...... .-.+....+.|+.
T Consensus 154 ~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~~~-~~~~~~~~~~~v~ 202 (245)
T 3ea0_A 154 SLRRAGQLLKLCKEFEKPISRIEIILNRADTNSRIT-SDEIEKVIGRPIS 202 (245)
T ss_dssp HHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTTSC-HHHHHHHHTSCEE
T ss_pred HHHHHHHHHHHHHHhCCCccceEEEEecCCCCCCCC-HHHHHHHhCCCeE
Confidence 1 12222333322 2344699999999754321 2233344555543
No 49
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.29 E-value=6.1e-12 Score=132.70 Aligned_cols=157 Identities=20% Similarity=0.258 Sum_probs=88.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|.|||||||++|.|+ |.+.++++. .+..+++........ .
T Consensus 3 ~v~ivG~pnvGKStL~nrl~------~~~~~~v~~-----------~~g~T~d~~~~~~~~------------------~ 47 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLV------KKKKAIVED-----------EEGVTRDPVQDTVEW------------------Y 47 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHH------C-------------------------CCSEEEEEE------------------T
T ss_pred EEEEECCCCCCHHHHHHHHh------CCCCceecC-----------CCCCccceeeEEEEE------------------C
Confidence 59999999999999999999 888777766 444555443211111 2
Q ss_pred CCcEEEEeCCCCCchh-HHHHHHHH--HHHHhcCCCEEEEEecCCCcccHHH--HHHHHhc-cCCeeEEEEeCccCCCCc
Q 011076 183 NCDLIIVDTSGRHKQE-AALFEEMR--QVSEATNPDLVIFVMDSSIGQAAFD--QAQAFKQ-SVSVGAVIVTKMDGHAKG 256 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~-~~l~~el~--~i~~~~~~d~vllVvDa~~g~~~~~--~~~~f~~-~~~i~~vVltK~D~~~~~ 256 (494)
+..+.|+||||..... +.+.+++. .......+|.+++|+|++.+....+ ....+.. ..++ .+|+||+|.....
T Consensus 48 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~-ilv~NK~D~~~~~ 126 (439)
T 1mky_A 48 GKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDT-ILVANKAENLREF 126 (439)
T ss_dssp TEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCE-EEEEESCCSHHHH
T ss_pred CeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCE-EEEEeCCCCcccc
Confidence 4568999999986421 11212222 1233457999999999987654332 3333332 3444 8999999974220
Q ss_pred cchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 257 g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
...+.. + ...+ .+.+...+|+..|.| +.+|++.+.+.++
T Consensus 127 --~~~~~~------------~-~~~l-g~~~~~~iSA~~g~g-v~~L~~~i~~~l~ 165 (439)
T 1mky_A 127 --EREVKP------------E-LYSL-GFGEPIPVSAEHNIN-LDTMLETIIKKLE 165 (439)
T ss_dssp --HHHTHH------------H-HGGG-SSCSCEECBTTTTBS-HHHHHHHHHHHHH
T ss_pred --HHHHHH------------H-HHhc-CCCCEEEEeccCCCC-HHHHHHHHHHhcc
Confidence 011100 0 0011 122335689999999 9999999977664
No 50
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.28 E-value=4.9e-12 Score=134.09 Aligned_cols=158 Identities=22% Similarity=0.316 Sum_probs=87.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
..+|+++|.|||||||++|.|+ |.+.++|+. .+..++....... .
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~------~~~~~~v~~-----------~~g~t~~~~~~~~--~---------------- 67 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIA------GERISIVED-----------TPGVTRDRIYSSA--E---------------- 67 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHE------EEEEC----------------------CEEEEC--T----------------
T ss_pred CCEEEEECCCCCcHHHHHHHHh------CCCCcccCC-----------CCCcceeEEEEEE--E----------------
Confidence 3479999999999999999999 888777665 2233433332111 1
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHH--HhcCCCEEEEEecCCCcccHHH--HHHHHhccCCeeEEEEeCccCCCCc
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVS--EATNPDLVIFVMDSSIGQAAFD--QAQAFKQSVSVGAVIVTKMDGHAKG 256 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~--~~~~~d~vllVvDa~~g~~~~~--~~~~f~~~~~i~~vVltK~D~~~~~ 256 (494)
..+..+.|+||||....++.+.+++.... ....+|.++||+|+..+....+ .+..+.+.-.+..+|+||+|.....
T Consensus 68 ~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~ 147 (456)
T 4dcu_A 68 WLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR 147 (456)
T ss_dssp TCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC------
T ss_pred ECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh
Confidence 12567899999998643333333333222 2336899999999987654333 3444443323348999999975331
Q ss_pred cchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 257 g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
.... + ...+ .+.+...+|+..|.| +.+|++.+.+.++
T Consensus 148 ~~~~----------------e-~~~l-g~~~~~~iSA~~g~g-v~~L~~~i~~~l~ 184 (456)
T 4dcu_A 148 ANIY----------------D-FYSL-GFGEPYPISGTHGLG-LGDLLDAVAEHFK 184 (456)
T ss_dssp ---C----------------C-SGGG-SSSSEEECCTTTCTT-HHHHHHHHHTTGG
T ss_pred hhHH----------------H-HHHc-CCCceEEeecccccc-hHHHHHHHHhhcc
Confidence 1100 0 0011 122335789999999 9999999988764
No 51
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.28 E-value=1.8e-11 Score=129.65 Aligned_cols=185 Identities=16% Similarity=0.226 Sum_probs=106.8
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccC
Q 011076 77 QAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAK 156 (494)
Q Consensus 77 ~~v~~eL~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~ 156 (494)
..+.+++.+.+...... ........|+++|.+||||||+++.|. +.....++. .+.+++..
T Consensus 173 ~~L~~~i~~~l~~~~~~--~~~~~~~ki~ivG~~~vGKSslin~l~------~~~~~~~~~-----------~~gtt~~~ 233 (456)
T 4dcu_A 173 GDLLDAVAEHFKNIPET--KYNEEVIQFCLIGRPNVGKSSLVNAML------GEERVIVSN-----------VAGTTRDA 233 (456)
T ss_dssp HHHHHHHHTTGGGSCSS--CCCTTCEEEEEECSTTSSHHHHHHHHH------TSTTEEECC-----------------CT
T ss_pred HHHHHHHHhhccccccc--ccccccceeEEecCCCCCHHHHHHHHh------CCCccccCC-----------CCCeEEEE
Confidence 34555555554322111 112345679999999999999999999 777677665 33334333
Q ss_pred cceeccCCCCChHHHHHHHHHHHhccCCcEEEEeCCCCCchh-----HHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH
Q 011076 157 IPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQE-----AALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD 231 (494)
Q Consensus 157 i~~~~~~~~~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~-----~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~ 231 (494)
+..... ..+..+.|+||||..... .+-...+..+.....+|.+++|+|++.+....+
T Consensus 234 ~~~~~~------------------~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~ 295 (456)
T 4dcu_A 234 VDTSFT------------------YNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQD 295 (456)
T ss_dssp TSEEEE------------------ETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHH
T ss_pred EEEEEE------------------ECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHH
Confidence 221110 124578999999963211 111222333334446899999999987644322
Q ss_pred --HHHHHhccCCeeEEEEeCccCCCCccchhHHHHhcCCCeEEecccccccc---ccccCccchhhcccCCCCchHHHHH
Q 011076 232 --QAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDE---FEVFDVKPFVSRLLGMGDWSGFMDK 306 (494)
Q Consensus 232 --~~~~f~~~~~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~---l~~f~p~~~vs~~~G~Gdi~~L~e~ 306 (494)
.+....+.-.+..+|+||+|............. +.+.. ...+.|..++|++.|.| ++.|++.
T Consensus 296 ~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~SA~~g~g-v~~l~~~ 362 (456)
T 4dcu_A 296 KRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFE------------ENIRDHFQFLDYAPILFMSALTKKR-IHTLMPA 362 (456)
T ss_dssp HHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHH------------HHHHHHCGGGTTSCEEECCTTTCTT-GGGHHHH
T ss_pred HHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHH------------HHHHHhcccCCCCCEEEEcCCCCcC-HHHHHHH
Confidence 233333222334899999998654322211111 11111 12245778899999999 9999999
Q ss_pred HHHhC
Q 011076 307 IHEVV 311 (494)
Q Consensus 307 i~~~~ 311 (494)
+.+.+
T Consensus 363 i~~~~ 367 (456)
T 4dcu_A 363 IIKAS 367 (456)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98876
No 52
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=99.27 E-value=4.3e-11 Score=116.55 Aligned_cols=160 Identities=15% Similarity=0.157 Sum_probs=92.5
Q ss_pred eEEEEE-cCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhH-------------HHHHhhh--------hccCcce
Q 011076 102 SVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-------------DQLKQNA--------TKAKIPF 159 (494)
Q Consensus 102 ~vI~lv-G~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~-------------~qLk~~~--------~~~~i~~ 159 (494)
++|+|+ +..|+||||++.+||.+|+++|++|++|++|++.+... +.+.... ...++.+
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~~~l~~~l~~~~~~~~~i~~~~~~l~~ 82 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYVGPGGVKV 82 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEECGGGCEE
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcchhcCCCCCCCCHHHHHcCCCcHHHhheeCCCCeEE
Confidence 467776 56799999999999999999999999999999754332 2121100 0123333
Q ss_pred eccCCCCCh-----HHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc--cHHHH
Q 011076 160 YGSYTESDP-----VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQ 232 (494)
Q Consensus 160 ~~~~~~~dp-----~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~--~~~~~ 232 (494)
.+.....++ .....+.+..+. ..||+||||||+..... .. .....+|.+++|+++.... .....
T Consensus 83 lp~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~~~--~~------~~~~~ad~vi~v~~~~~~~~~~~~~~ 153 (263)
T 1hyq_A 83 VPAGVSLEGLRKANPEKLEDVLTQIM-ESTDILLLDAPAGLERS--AV------IAIAAAQELLLVVNPEISSITDGLKT 153 (263)
T ss_dssp EECCSCHHHHHHHCHHHHHHHHHHHH-HTCSEEEEECCSSSSHH--HH------HHHHHSSEEEEEECSSHHHHHHHHHH
T ss_pred EcCCCCcChhhccChHHHHHHHHHHH-hhCCEEEEeCCCCCChH--HH------HHHHHCCEEEEEeCCChhHHHHHHHH
Confidence 331111111 122233444444 58999999999876422 11 1122468999999876321 12222
Q ss_pred HHHHhc-cCCeeEEEEeCccCCCCccchhHHHHhcCCCe
Q 011076 233 AQAFKQ-SVSVGAVIVTKMDGHAKGGGALSAVAATKSPV 270 (494)
Q Consensus 233 ~~~f~~-~~~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi 270 (494)
...+.. ..++.++|+|++|..........+....+.|+
T Consensus 154 ~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~~~~~~~ 192 (263)
T 1hyq_A 154 KIVAERLGTKVLGVVVNRITTLGIEMAKNEIEAILEAKV 192 (263)
T ss_dssp HHHHHHHTCEEEEEEEEEECTTTHHHHHHHHHHHTTSCE
T ss_pred HHHHHhcCCCeeEEEEccCCcccccchHHHHHHHhCCCe
Confidence 233322 24567999999997543322223334456554
No 53
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.27 E-value=2.4e-11 Score=111.49 Aligned_cols=158 Identities=22% Similarity=0.256 Sum_probs=90.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+...++.. ...+. .+.++.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~------~~~~~~~~~~-----------~~~t~-~~~~~~------------------- 65 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALF------NRKIAFVSKT-----------PGKTR-SINFYL------------------- 65 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHH------TSCCSCCCSS-----------CCCCC-CEEEEE-------------------
T ss_pred CeEEEEECCCCCCHHHHHHHHH------cCccccccCC-----------CCCcc-CeEEEE-------------------
Confidence 3569999999999999999998 6553222221 01111 111111
Q ss_pred ccCCcEEEEeCCCCCch-----hHHHHHHH-HHHH-HhcCCCEEEEEecCCCcccHH--HHHHHHhc-cCCeeEEEEeCc
Q 011076 181 KENCDLIIVDTSGRHKQ-----EAALFEEM-RQVS-EATNPDLVIFVMDSSIGQAAF--DQAQAFKQ-SVSVGAVIVTKM 250 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~-----~~~l~~el-~~i~-~~~~~d~vllVvDa~~g~~~~--~~~~~f~~-~~~i~~vVltK~ 250 (494)
.+..+.++||||.... .......+ .... .+..++.+++|+|++.+.... .....+.. ..|+ .+|+||+
T Consensus 66 -~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~-i~v~nK~ 143 (195)
T 3pqc_A 66 -VNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPF-TIVLTKM 143 (195)
T ss_dssp -ETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCE-EEEEECG
T ss_pred -ECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCE-EEEEECh
Confidence 1457899999996422 11112222 1222 233468899999987653322 22333333 2444 8999999
Q ss_pred cCCCCccchhHHHHhcCCCeEEecccccccc-cc--ccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDE-FE--VFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 251 D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~-l~--~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
|...... ..... +.+.. +. ...+...+|+..|.| ++.|++.+.+.++
T Consensus 144 Dl~~~~~--~~~~~------------~~~~~~~~~~~~~~~~~~Sa~~~~g-v~~l~~~l~~~l~ 193 (195)
T 3pqc_A 144 DKVKMSE--RAKKL------------EEHRKVFSKYGEYTIIPTSSVTGEG-ISELLDLISTLLK 193 (195)
T ss_dssp GGSCGGG--HHHHH------------HHHHHHHHSSCCSCEEECCTTTCTT-HHHHHHHHHHHHC
T ss_pred hcCChHH--HHHHH------------HHHHHHHhhcCCCceEEEecCCCCC-HHHHHHHHHHHhh
Confidence 9864321 11110 11111 11 123556789999999 9999999988764
No 54
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.27 E-value=5.8e-12 Score=123.68 Aligned_cols=153 Identities=16% Similarity=0.076 Sum_probs=91.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|.|||||||++|.|. |.+.. +.. .+..+..... +.. ...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~------g~~~~-v~~-----------~pg~Tv~~~~--~~~----------------~~~ 46 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALT------NANQR-VGN-----------WPGVTVEKKT--GEF----------------LLG 46 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHH------TTSEE-EEE-----------CTTSSSEEEE--EEE----------------EET
T ss_pred EEEEECCCCCCHHHHHHHHH------CCCCC-ccC-----------CCCceEEEEE--EEE----------------EEC
Confidence 58999999999999999998 76633 332 1111111110 000 012
Q ss_pred CCcEEEEeCCCCCchhH-----HHHHHHH-HHHHhcCCCEEEEEecCCCcccHHHHHHHHhccCCeeEEEEeCccCCCCc
Q 011076 183 NCDLIIVDTSGRHKQEA-----ALFEEMR-QVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKG 256 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~-----~l~~el~-~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~~i~~vVltK~D~~~~~ 256 (494)
+.++.|+||||...... ...+.+. .......+|.+++|+|++...........+.+.-.+..+|+||+|.....
T Consensus 47 ~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~ 126 (256)
T 3iby_A 47 EHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIAEHR 126 (256)
T ss_dssp TEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHHHHT
T ss_pred CeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcCCcC
Confidence 45789999999865432 2222222 22223579999999999864333333334443322349999999975432
Q ss_pred cchh---HHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 257 GGAL---SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 257 g~~l---s~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
+... .+....+ .|..++|+..|.| ++.|++.+.+.
T Consensus 127 ~~~~~~~~l~~~lg------------------~~vi~~SA~~g~g-i~el~~~i~~~ 164 (256)
T 3iby_A 127 GISIDTEKLESLLG------------------CSVIPIQAHKNIG-IPALQQSLLHC 164 (256)
T ss_dssp TCEECHHHHHHHHC------------------SCEEECBGGGTBS-HHHHHHHHHTC
T ss_pred CcHHHHHHHHHHcC------------------CCEEEEECCCCCC-HHHHHHHHHhh
Confidence 2111 1111111 3566789999999 99999999887
No 55
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.26 E-value=2.7e-11 Score=107.62 Aligned_cols=154 Identities=17% Similarity=0.222 Sum_probs=87.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|.+||||||+++.|. +.+...++. ....+..... .. . ...
T Consensus 3 ki~v~G~~~~GKSsli~~l~------~~~~~~~~~-----------~~~~~~~~~~-~~-~----------------~~~ 47 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLL------KKRSAVVAD-----------VPGVTRDLKE-GV-V----------------ETD 47 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHH------HCCC----------------------CCEE-EE-E----------------EET
T ss_pred EEEEECCCCCCHHHHHHHHh------CCCeeeccC-----------CCCceecceE-EE-E----------------EeC
Confidence 58999999999999999998 444332222 1111111110 00 0 012
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHH--HHHhcCCCEEEEEecCCCcccHHH--HHHHHhc-cCCeeEEEEeCccCCCCcc
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQ--VSEATNPDLVIFVMDSSIGQAAFD--QAQAFKQ-SVSVGAVIVTKMDGHAKGG 257 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~--i~~~~~~d~vllVvDa~~g~~~~~--~~~~f~~-~~~i~~vVltK~D~~~~~g 257 (494)
+..+.|+||||...... +...+.. ......+|.+++|+|++.+....+ ....+.. ..|+ .+|+||+|......
T Consensus 48 ~~~~~l~Dt~G~~~~~~-~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~~~ 125 (161)
T 2dyk_A 48 RGRFLLVDTGGLWSGDK-WEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPV-ILVATKVDDPKHEL 125 (161)
T ss_dssp TEEEEEEECGGGCSSSS-CCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCE-EEEEECCCSGGGGG
T ss_pred CceEEEEECCCCCCccc-hHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCE-EEEEECcccccchH
Confidence 45789999999865211 1111111 122346899999999986543322 2222322 3454 99999999864311
Q ss_pred chhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 258 ~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
.. +.+..+ .+.+...+|+..|.| ++.+++.+.+.+|
T Consensus 126 ~~-----------------~~~~~~-~~~~~~~~Sa~~~~g-v~~l~~~l~~~l~ 161 (161)
T 2dyk_A 126 YL-----------------GPLYGL-GFGDPIPTSSEHARG-LEELLEAIWERLP 161 (161)
T ss_dssp GC-----------------GGGGGG-SSCSCEECBTTTTBS-HHHHHHHHHHHCC
T ss_pred hH-----------------HHHHhC-CCCCeEEEecccCCC-hHHHHHHHHHhCc
Confidence 11 111111 122456789999999 9999999987763
No 56
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.26 E-value=1.2e-11 Score=117.47 Aligned_cols=180 Identities=16% Similarity=0.194 Sum_probs=104.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccC----CCCChHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSY----TESDPVRIAVEGV 176 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~----~~~dp~~i~~~~l 176 (494)
..+|+++|.+||||||++++|+..+... +++++|..|++.....+.+... +..+.... ......+ ..+.+
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~~~~d~~~~~~~----~~~~~~~~~~~~~~l~~~~-~~~~~ 111 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVIAKFDAERMEKH----GAKVVPLNTGKECHLDAHL-VGHAL 111 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETTTHHHHHHHHTT----TCEEEEEECTTCSSCCHHH-HHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCCCCCccHHHHHhc----CCcEEEecCCceEeccHHH-HHHHH
Confidence 4679999999999999999999887664 7899999998754334433322 22211111 1111222 23444
Q ss_pred HHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH-HHHHHHhccCCeeEEEEeCccCCCC
Q 011076 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF-DQAQAFKQSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 177 ~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~-~~~~~f~~~~~i~~vVltK~D~~~~ 255 (494)
..+...++|++++||+|....... .....+..+.|+|+..+.... .....+. .+ ..+|+||+|....
T Consensus 112 ~~l~~~~~d~~~id~~g~i~~~~s---------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~-~iiv~NK~Dl~~~ 179 (226)
T 2hf9_A 112 EDLNLDEIDLLFIENVGNLICPAD---------FDLGTHKRIVVISTTEGDDTIEKHPGIMK--TA-DLIVINKIDLADA 179 (226)
T ss_dssp TTSCGGGCSEEEEECCSCSSGGGG---------CCCSCSEEEEEEEGGGCTTTTTTCHHHHT--TC-SEEEEECGGGHHH
T ss_pred HHHhcCCCCEEEEeCCCCccCcch---------hhhccCcEEEEEecCcchhhHhhhhhHhh--cC-CEEEEeccccCch
Confidence 444445789999999996432111 012356677888864332211 1122232 23 4899999997532
Q ss_pred ccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
......... +.+..+.+..+...+|+..|.| ++.|++.+.+.+
T Consensus 180 ~~~~~~~~~------------~~~~~~~~~~~~~~~Sa~~g~g-v~~l~~~l~~~~ 222 (226)
T 2hf9_A 180 VGADIKKME------------NDAKRINPDAEVVLLSLKTMEG-FDKVLEFIEKSV 222 (226)
T ss_dssp HTCCHHHHH------------HHHHHHCTTSEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred hHHHHHHHH------------HHHHHhCCCCeEEEEEecCCCC-HHHHHHHHHHHH
Confidence 111111111 1111222334556789999999 999999887654
No 57
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.25 E-value=7.5e-11 Score=120.99 Aligned_cols=156 Identities=17% Similarity=0.178 Sum_probs=90.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
.+..|+++|.+||||||+++.|+ +..+. +...+ +++.. +.+.. .
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~------~~~~~-~~~~~-----------~~t~~-~~~~~-----------------~ 209 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALT------TAKPE-IASYP-----------FTTRG-INVGQ-----------------F 209 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHC------SSCCE-EECCT-----------TCSSC-EEEEE-----------------E
T ss_pred CCCEEEEECCCCCCHHHHHHHHh------CCCCc-cCCCC-----------Ceeec-eeEEE-----------------E
Confidence 35689999999999999999998 65532 22211 11111 11000 0
Q ss_pred hccCCcEEEEeCCCCCchh----HHHHHHHHHHHH-hcCCCEEEEEecCCCcc--cHHH---HHHHHhc---cCCeeEEE
Q 011076 180 KKENCDLIIVDTSGRHKQE----AALFEEMRQVSE-ATNPDLVIFVMDSSIGQ--AAFD---QAQAFKQ---SVSVGAVI 246 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~----~~l~~el~~i~~-~~~~d~vllVvDa~~g~--~~~~---~~~~f~~---~~~i~~vV 246 (494)
...+.++.++||||..... .... ...+.. ...+|.+++|+|++... +..+ ....+.. ..++ .+|
T Consensus 210 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~pi-ilV 286 (357)
T 2e87_A 210 EDGYFRYQIIDTPGLLDRPISERNEIE--KQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPF-LVV 286 (357)
T ss_dssp EETTEEEEEEECTTTSSSCSTTSCHHH--HHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCE-EEE
T ss_pred EecCceEEEEeCCCccccchhhhhHHH--HHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCE-EEE
Confidence 0124578999999985421 1111 111222 23589999999987543 3222 2222322 3444 899
Q ss_pred EeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 247 VTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 247 ltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
+||+|...... .-.+.. ... ....+...+|+..|.| ++.|++.+.+.+
T Consensus 287 ~NK~Dl~~~~~-~~~~~~-------------~~~--~~~~~~~~iSA~~g~g-i~~l~~~i~~~l 334 (357)
T 2e87_A 287 INKIDVADEEN-IKRLEK-------------FVK--EKGLNPIKISALKGTG-IDLVKEEIIKTL 334 (357)
T ss_dssp ECCTTTCCHHH-HHHHHH-------------HHH--HTTCCCEECBTTTTBT-HHHHHHHHHHHH
T ss_pred EECcccCChHH-HHHHHH-------------HHH--hcCCCeEEEeCCCCcC-HHHHHHHHHHHH
Confidence 99999865422 111110 000 1123556789999999 999999998876
No 58
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.25 E-value=2.6e-11 Score=119.48 Aligned_cols=154 Identities=16% Similarity=0.128 Sum_probs=90.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+|+|++||||||+++.|+ |.+. .+...+ ..+ +.+.... +..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~------g~~~-~~~~~~-----------~~t---~~~~~~~---------------~~~ 47 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALT------GLRQ-HVGNWP-----------GVT---VEKKEGI---------------MEY 47 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHH------TTCE-EEEECT-----------TSS---CEEEEEE---------------EEE
T ss_pred eEEEEECCCCCCHHHHHHHHh------CCCc-ccCCCC-----------CeE---EEeeEEE---------------EEE
Confidence 569999999999999999998 7655 333211 111 1110000 001
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHH--HHHHhcCCCEEEEEecCCCcccHHHHHHHHhc-c-CCeeEEEEeCccCCCCcc
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMR--QVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQ-S-VSVGAVIVTKMDGHAKGG 257 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~--~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~-~-~~i~~vVltK~D~~~~~g 257 (494)
.+..+.|+||||..........+.. .......+|.+++|+|++...........+.+ . .| ..+|+||+|...+.+
T Consensus 48 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~ 126 (271)
T 3k53_A 48 REKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMRNLFLTLELFEMEVKN-IILVLNKFDLLKKKG 126 (271)
T ss_dssp TTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTTCCS-EEEEEECHHHHHHHT
T ss_pred CCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchhhHHHHHHHHhcCCCC-EEEEEEChhcCcccc
Confidence 2557899999997643322122221 22223579999999999875443333333322 2 44 489999999643221
Q ss_pred c---hhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 258 G---ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 258 ~---~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
. ...+....+. |..++|+..|.| +..|++.+.+.+
T Consensus 127 ~~~~~~~l~~~lg~------------------~~~~~Sa~~g~g-i~~l~~~i~~~~ 164 (271)
T 3k53_A 127 AKIDIKKMRKELGV------------------PVIPTNAKKGEG-VEELKRMIALMA 164 (271)
T ss_dssp CCCCHHHHHHHHSS------------------CEEECBGGGTBT-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCC------------------cEEEEEeCCCCC-HHHHHHHHHHHH
Confidence 1 1112222222 445678888888 998888887765
No 59
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=99.25 E-value=9.7e-11 Score=114.54 Aligned_cols=144 Identities=19% Similarity=0.175 Sum_probs=85.1
Q ss_pred CCCeEEEEE-cCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhh-------------------------
Q 011076 99 GKPSVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNA------------------------- 152 (494)
Q Consensus 99 ~~~~vI~lv-G~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~------------------------- 152 (494)
.++++|+|+ +..|+||||++..||.+|+ +|++|++|++|++.+....-.....
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i 103 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEILKENVDIDSTI 103 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHTHHHHHHTTCCTTTSSHHHHHTTSSCGGGGC
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCCHHHHhhccccccccCcccccHHHHhcCCCCHHHhh
Confidence 456788887 5569999999999999999 9999999999998754321111000
Q ss_pred --hccCcceeccCCC-----CC----hHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEe
Q 011076 153 --TKAKIPFYGSYTE-----SD----PVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVM 221 (494)
Q Consensus 153 --~~~~i~~~~~~~~-----~d----p~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVv 221 (494)
...++.+.+.... .. ......+.+..+. ..||+||||||+..... . ......+|.+++|+
T Consensus 104 ~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~pp~~~~~--~------~~~l~~aD~vivv~ 174 (267)
T 3k9g_A 104 INVDNNLDLIPSYLTLHNFSEDKIEHKDFLLKTSLGTLY-YKYDYIVIDTNPSLDVT--L------KNALLCSDYVIIPM 174 (267)
T ss_dssp EEEETTEEEECCCGGGGGTTTCCCTTGGGHHHHHHHTTC-TTCSEEEEEECSSCSHH--H------HHHHTTCSEEEEEE
T ss_pred ccCCCCEEEEeCChHHHHHHHhhhhhHHHHHHHHHHHhh-cCCCEEEEECcCCccHH--H------HHHHHHCCeEEEEe
Confidence 0012222221110 00 1223444555543 57999999999876321 1 12233589999999
Q ss_pred cCCCcc-cHH-HHHHHHhc---cCCeeEEEEeCccCC
Q 011076 222 DSSIGQ-AAF-DQAQAFKQ---SVSVGAVIVTKMDGH 253 (494)
Q Consensus 222 Da~~g~-~~~-~~~~~f~~---~~~i~~vVltK~D~~ 253 (494)
.+.... ... .....+.. ..++ ++|+|+++..
T Consensus 175 ~~~~~s~~~~~~~~~~l~~~~~~~~~-~vv~N~~~~~ 210 (267)
T 3k9g_A 175 TAEKWAVESLDLFNFFVRKLNLFLPI-FLIITRFKKN 210 (267)
T ss_dssp ESCTTHHHHHHHHHHHHHTTTCCCCE-EEEEEEECTT
T ss_pred CCChHHHHHHHHHHHHHHHHhccCCE-EEEEecccCc
Confidence 886421 111 12222222 2345 6999999543
No 60
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=99.24 E-value=7.4e-11 Score=115.29 Aligned_cols=146 Identities=16% Similarity=0.142 Sum_probs=84.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHH------------HHhh-----------hhccCcc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQ------------LKQN-----------ATKAKIP 158 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~q------------Lk~~-----------~~~~~i~ 158 (494)
++|+|.|..|+||||++.+||.+|+++|++|++|++|++.+....- +... ....++.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~l~ 81 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDSILKEGYGGIR 81 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHHHCEECGGGCE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCHHHHhcCCCCcccHHHHHhccCcCCCHHHhhccCCCCee
Confidence 4688889999999999999999999999999999999987544211 2111 0012333
Q ss_pred eeccCCCC-Ch----HHH--HHHHHHHHh--ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc--
Q 011076 159 FYGSYTES-DP----VRI--AVEGVETFK--KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ-- 227 (494)
Q Consensus 159 ~~~~~~~~-dp----~~i--~~~~l~~~~--~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~-- 227 (494)
+....... +. ... ....+..+. .+.||||||||||....+ .+.. ......+|.+++|+.+....
T Consensus 82 vl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~yD~iiiD~~~~~~~~-~~~~----~~~~~~aD~viiv~~~~~~s~~ 156 (269)
T 1cp2_A 82 CVESGGPEPGVGCAGRGIITSINMLEQLGAYTDDLDYVFYDVLGDVVCG-GFAM----PIREGKAQEIYIVASGEMMALY 156 (269)
T ss_dssp EEECCCCCTTSSCHHHHHHHHHHHHHHTTCCCTTCSEEEEEEECSSCST-TTTH----HHHTTSCCEEEEEECSSHHHHH
T ss_pred EEeCCCchhhccccCcchhhHHHHHHHHHhhccCCCEEEEeCCchhhhh-hhhh----hhhHhhCCEEEEeecCchhhHH
Confidence 33221111 00 111 011112222 347999999999875432 1110 11123589999999886321
Q ss_pred cH---HHHHHHHhc--cCCeeEEEEeCccC
Q 011076 228 AA---FDQAQAFKQ--SVSVGAVIVTKMDG 252 (494)
Q Consensus 228 ~~---~~~~~~f~~--~~~i~~vVltK~D~ 252 (494)
.. .+.+..+.. .+++.++|+|+.+.
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 157 AANNISKGIQKYAKSGGVRLGGIICNSRKV 186 (269)
T ss_dssp HHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence 11 122223322 24456899999974
No 61
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.24 E-value=2.9e-11 Score=123.86 Aligned_cols=144 Identities=13% Similarity=0.050 Sum_probs=76.9
Q ss_pred CCcEEEEeCCCCCch------h--HHHHHHHHHHHHhcCCCEEEEEecCCCccc---HHHHHHHHhccCCeeEEEEeCcc
Q 011076 183 NCDLIIVDTSGRHKQ------E--AALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQSVSVGAVIVTKMD 251 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~------~--~~l~~el~~i~~~~~~d~vllVvDa~~g~~---~~~~~~~f~~~~~i~~vVltK~D 251 (494)
.++++||||||.... . ......+.........+.+++|+|+..+.. ....++.+...-....+|+||+|
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~D 208 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLD 208 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGG
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEecccc
Confidence 478999999998642 1 112222221111223456777888765322 22344444433234599999999
Q ss_pred CCCCccchhHHHHhcCCCeEEeccccccccc-cccCccchhhcccCCCCchHHHHHHHHhC----CCCCchHHHhh---h
Q 011076 252 GHAKGGGALSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLLGMGDWSGFMDKIHEVV----PMDQQPELLQK---L 323 (494)
Q Consensus 252 ~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l-~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~----~~~~~~~~~~~---~ 323 (494)
.......+...... +.. .+ ..+.+...+|+..|.| +..|++.+.+.- +.+..++..++ .
T Consensus 209 l~~~~~~~~~~~~~-----------~~~-~l~~~~~~v~~~SA~~~~~-i~~l~~~l~~e~~~f~~~~~~~~~~~r~~~~ 275 (353)
T 2x2e_A 209 LMDEGTDARDVLEN-----------KLL-PLRRGYIGVVNRSQKDIDG-KKDITAALAAERKFFLSHPSYRHLADRMGTP 275 (353)
T ss_dssp GSCTTCCCHHHHTT-----------CSS-CCTTCEEECCCCCHHHHHT-TCCHHHHHHHHHHHHHHCTTTGGGGGGCSHH
T ss_pred ccCcchhHHHHHhC-----------Ccc-cccCCceEEEeCCcccccc-cccHHHHHHHHHHHhccCCcccccHHhhCHH
Confidence 86553323333221 111 11 1244567789999999 888888886621 12222333333 2
Q ss_pred hcchhhHHHHHHHHHH
Q 011076 324 SEGNFTLRIMYEQFQN 339 (494)
Q Consensus 324 ~~~~f~~~d~~~ql~~ 339 (494)
.-.++..+.++.++++
T Consensus 276 ~l~~~l~e~l~~~i~~ 291 (353)
T 2x2e_A 276 YLQKVLNQQLTNHIRD 291 (353)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 2235556666666665
No 62
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.24 E-value=1.4e-12 Score=141.52 Aligned_cols=172 Identities=15% Similarity=0.095 Sum_probs=84.8
Q ss_pred cEEEEeCCCCCchhH-HH-----HHHHHHHHHhcCCCEEEEEecCCCc-c--cHHHHHHHHhccCCeeEEEEeCccCCCC
Q 011076 185 DLIIVDTSGRHKQEA-AL-----FEEMRQVSEATNPDLVIFVMDSSIG-Q--AAFDQAQAFKQSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 185 dvIIIDTaG~~~~~~-~l-----~~el~~i~~~~~~d~vllVvDa~~g-~--~~~~~~~~f~~~~~i~~vVltK~D~~~~ 255 (494)
.++||||||...... .+ +..+. ......+|.+++|+|++.. . .....+..+...-....+|+||+|....
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~-~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVL-RWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVET 233 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHH-HHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCH
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHH-HHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCH
Confidence 579999999975221 11 11111 1112357999999999752 2 2223344443322235999999998643
Q ss_pred ccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh-C-CCCCchHHHhhhhcchhhHHHH
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV-V-PMDQQPELLQKLSEGNFTLRIM 333 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~-~-~~~~~~~~~~~~~~~~f~~~d~ 333 (494)
. ....+..... ..+.+...+|.+.. ..... . +.+.. +..+++...|+ +++
T Consensus 234 ~-el~~~~~~l~---------------~s~~~i~~vs~l~~---------~~~~~~~~~~~~~-~~~~~~~~~E~--e~l 285 (550)
T 2qpt_A 234 Q-QLMRVYGALM---------------WALGKVVGTPEVLR---------VYIGSFWSQPLLV-PDNRRLFELEE--QDL 285 (550)
T ss_dssp H-HHHHHHHHHH---------------HHHHHHHCCSSCCC---------EEESCCSSSCCSS-CTTHHHHHHHH--HHH
T ss_pred H-HHHHHHHHhh---------------cchhheeechHhhh---------hccccCCCCcccC-CCCHHHHHHHH--HHH
Confidence 2 1111111100 00000000110000 00000 0 11111 23345555555 777
Q ss_pred HHHHHHHhccCChhHHhhcCCCCCCccCcchhhhh-hHHhHHhHhHhhcCCCHHhhcCCCCCCc--chHHHHHHH
Q 011076 334 YEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKE-SQAKIKRYMTMMDSMTNEELDSSNPKLM--NDSRIMRIA 405 (494)
Q Consensus 334 ~~ql~~~~~~g~~~~~~~~lPg~~~~~~~~~~~~~-~~~~~~~~~~ii~smt~~er~~~~~~~i--~~sr~~rIa 405 (494)
+.++ + ++||.. .+ ..-+++ ......++.|.|. +||+++++++| +|++++.|+
T Consensus 286 ~~~l-~------------elP~~~-~v--~~i~~~~~~~~~~~I~a~I~----v~~~sqk~i~iGk~g~~~~li~ 340 (550)
T 2qpt_A 286 FRDI-Q------------GLPRHA-AL--RKLNDLVKRARLVRVHAYII----SYLKKEMPTVFGKENKKKQLIL 340 (550)
T ss_dssp HHHH-H------------TTGGGH-HH--HHHHHHHHHHHHHHHHHHHH----HHHHHHSCSSSCHHHHHHHHHH
T ss_pred HHHh-h------------hccHHH-HH--HHHHHHhccCCeEEEEEEEE----EeecccceeEECCchHHHHHHH
Confidence 7775 4 899865 33 211222 2235778999998 99999998888 345554443
No 63
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.24 E-value=1.4e-10 Score=106.76 Aligned_cols=158 Identities=21% Similarity=0.184 Sum_probs=87.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCc-eEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWK-PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~k-VaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
...|+++|.+||||||+++.|. +.+ ...++. ....+.. +.++.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~------~~~~~~~~~~-----------~~~~t~~-~~~~~------------------ 66 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLI------NRKNLARTSS-----------KPGKTQT-LNFYI------------------ 66 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHH------TC------------------------CC-EEEEE------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHh------CCCCccccCC-----------CCCceee-EEEEE------------------
Confidence 4579999999999999999998 543 222222 1111111 11111
Q ss_pred hccCCcEEEEeCCCCCch------hHHHHHHHHHHHH-hcCCCEEEEEecCCCcccHHH--HHHHHhc-cCCeeEEEEeC
Q 011076 180 KKENCDLIIVDTSGRHKQ------EAALFEEMRQVSE-ATNPDLVIFVMDSSIGQAAFD--QAQAFKQ-SVSVGAVIVTK 249 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~------~~~l~~el~~i~~-~~~~d~vllVvDa~~g~~~~~--~~~~f~~-~~~i~~vVltK 249 (494)
.+..+.|+||||.... .+........... +...|.+++|+|++.+....+ ....+.. ..|+ .+|+||
T Consensus 67 --~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~-i~v~nK 143 (195)
T 1svi_A 67 --INDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPV-IVIATK 143 (195)
T ss_dssp --ETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCE-EEEEEC
T ss_pred --ECCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCE-EEEEEC
Confidence 1346899999996432 1111111222222 223488999999986544332 2333333 2444 999999
Q ss_pred ccCCCCccch--hHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 250 MDGHAKGGGA--LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 250 ~D~~~~~g~~--ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
+|........ ..... +.+. .....+...+|+..|.| ++.|++.+.+.+
T Consensus 144 ~Dl~~~~~~~~~~~~~~------------~~~~-~~~~~~~~~~Sa~~~~g-v~~l~~~l~~~l 193 (195)
T 1svi_A 144 ADKIPKGKWDKHAKVVR------------QTLN-IDPEDELILFSSETKKG-KDEAWGAIKKMI 193 (195)
T ss_dssp GGGSCGGGHHHHHHHHH------------HHHT-CCTTSEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHH------------HHHc-ccCCCceEEEEccCCCC-HHHHHHHHHHHh
Confidence 9986542111 01110 0010 11234556789999999 999999987765
No 64
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=99.23 E-value=5e-11 Score=118.50 Aligned_cols=144 Identities=17% Similarity=0.177 Sum_probs=85.7
Q ss_pred eEEEEEc---CCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhh-----------------------cc
Q 011076 102 SVIMFVG---LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNAT-----------------------KA 155 (494)
Q Consensus 102 ~vI~lvG---~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~-----------------------~~ 155 (494)
++|+|++ ..|+||||++.+||.+|+++|++|++|++|++++.+......... ..
T Consensus 35 ~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 114 (298)
T 2oze_A 35 EAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNLASSIVHLTD 114 (298)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTTTSCCCCCSSCHHHHHHHTCCGGGCEESSS
T ss_pred cEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHhccCCCCcccHHHHHhcCChhhhhcccCC
Confidence 4577776 889999999999999999999999999999987643211000000 01
Q ss_pred CcceeccCCCC-Ch------------HHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEec
Q 011076 156 KIPFYGSYTES-DP------------VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMD 222 (494)
Q Consensus 156 ~i~~~~~~~~~-dp------------~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvD 222 (494)
++.+.+..... .. .....+.+..++ ..||+||||||+...... . .....+|.+++|+.
T Consensus 115 ~l~vlp~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~~~--~------~~l~~aD~viiv~~ 185 (298)
T 2oze_A 115 NLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLK-SDYDLIIIDTVPTPSVYT--N------NAIVASDYVMIPLQ 185 (298)
T ss_dssp SEEEECCCGGGGGHHHHTTTSCHHHHHTHHHHHHGGGG-GGCSEEEEEECSSCSHHH--H------HHHHHCSEEEEEEC
T ss_pred CeEEEeCCchHHHHHHHhhhhccccHHHHHHHHHHHHh-cCCCEEEEECCCCccHHH--H------HHHHHCCeEEEEec
Confidence 22222211100 00 111333344443 579999999998764321 1 11123799999998
Q ss_pred CCCcc-c-H---HHHHHH----HhccCCeeEEEEeCccCCC
Q 011076 223 SSIGQ-A-A---FDQAQA----FKQSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 223 a~~g~-~-~---~~~~~~----f~~~~~i~~vVltK~D~~~ 254 (494)
+.... . . .+.+.. ++..+++.++|+|++|...
T Consensus 186 ~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~ 226 (298)
T 2oze_A 186 AEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS 226 (298)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc
Confidence 76421 1 1 122222 2234566799999999754
No 65
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=99.23 E-value=1.4e-10 Score=112.28 Aligned_cols=144 Identities=12% Similarity=0.086 Sum_probs=86.9
Q ss_pred eEEEEEc-CCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHH--------------h------h----hhccC
Q 011076 102 SVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK--------------Q------N----ATKAK 156 (494)
Q Consensus 102 ~vI~lvG-~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk--------------~------~----~~~~~ 156 (494)
++|+|++ ..|+||||++.+||.+|+++|++|++|++|++.+.....+. . . ....+
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 82 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTEN 82 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECSSSTT
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccCCCCC
Confidence 5788875 46999999999999999999999999999996544322111 0 0 01123
Q ss_pred cceeccCCCCC----hHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc--cHH
Q 011076 157 IPFYGSYTESD----PVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAF 230 (494)
Q Consensus 157 i~~~~~~~~~d----p~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~--~~~ 230 (494)
+.+.+.....+ ......+.+..++...||+||||||+..... . ......+|.+++|+++.... ...
T Consensus 83 l~~lp~~~~~~~~~~~~~~~~~~l~~l~~~~yD~viiD~p~~~~~~--~------~~~l~~ad~vi~v~~~~~~s~~~~~ 154 (260)
T 3q9l_A 83 LYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETG--A------LMALYFADEAIITTNPEVSSVRDSD 154 (260)
T ss_dssp EEEECCCSCCCTTSSCHHHHHHHHHHHHHTTCSEEEEECCSSSSHH--H------HHHHHTCSEEEEEECSSHHHHHHHH
T ss_pred EEEecCCCccchhhCCHHHHHHHHHHHhccCCCEEEEcCCCCCCHH--H------HHHHHhCCEEEEEecCChhHHHHHH
Confidence 33333221111 1223445555555338999999999866422 1 12223689999999986321 112
Q ss_pred HHHHHHhccC---------CeeEEEEeCccCC
Q 011076 231 DQAQAFKQSV---------SVGAVIVTKMDGH 253 (494)
Q Consensus 231 ~~~~~f~~~~---------~i~~vVltK~D~~ 253 (494)
.....+.... ...++|+|++|..
T Consensus 155 ~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~ 186 (260)
T 3q9l_A 155 RILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (260)
T ss_dssp HHHHHHTTSSHHHHTTCSCCEEEEEEEEECHH
T ss_pred HHHHHHHHhccccccccCCcceEEEEecCCcc
Confidence 2223332211 3469999999853
No 66
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=99.23 E-value=3.2e-11 Score=115.66 Aligned_cols=140 Identities=13% Similarity=0.066 Sum_probs=84.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHH----------------hhhh--------------
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK----------------QNAT-------------- 153 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk----------------~~~~-------------- 153 (494)
|+|.|..|+||||++.+||.+|+++|+||++|++|++ +.....+. ....
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~-~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD-SCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLILNPK 81 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT-SCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCCSSCC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC-cChHHHhCCCcccccccccchhHHHHHHhhccCCcccccCCc
Confidence 6779999999999999999999999999999999995 43322110 0000
Q ss_pred -----------ccCcce-eccC------CCC-ChH-HHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcC
Q 011076 154 -----------KAKIPF-YGSY------TES-DPV-RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATN 213 (494)
Q Consensus 154 -----------~~~i~~-~~~~------~~~-dp~-~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~ 213 (494)
..++.+ .... ... .+. ....+.+..+....||+||||||+...... ......
T Consensus 82 l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~viiD~pp~~~~~~--------~~~l~~ 153 (254)
T 3kjh_A 82 VDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCYCRENSFLGSVVSALFLDKKEAVVMDMGAGIEHLT--------RGTAKA 153 (254)
T ss_dssp CTTSGGGSSEESSSSEEEEECCCCCCCCSSCCHHHHHHHHHHHHHHHHTCCSEEEEEECTTCTTCC--------HHHHTT
T ss_pred hhccHHhcccccCCeEEEEEecccccCCCCCCcchHHHHHHHHHHhccCCCCEEEEeCCCcccHHH--------HHHHHH
Confidence 011111 1100 000 111 345666666635689999999988654321 122346
Q ss_pred CCEEEEEecCCCc-ccHHHHHHHHhcc--CCeeEEEEeCccC
Q 011076 214 PDLVIFVMDSSIG-QAAFDQAQAFKQS--VSVGAVIVTKMDG 252 (494)
Q Consensus 214 ~d~vllVvDa~~g-~~~~~~~~~f~~~--~~i~~vVltK~D~ 252 (494)
+|.+++|+++... ......+..+... .+..++|+|+++.
T Consensus 154 aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 154 VDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp CSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred CCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 8999999998632 1112222222222 2445899999984
No 67
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.22 E-value=2.5e-11 Score=133.24 Aligned_cols=205 Identities=15% Similarity=0.188 Sum_probs=96.4
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHHHhh---
Q 011076 10 ISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKM--- 86 (494)
Q Consensus 10 l~~~~~~l~~~~~~~e~~i~~~l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL~~l--- 86 (494)
|...+++..+ |+|..++.+ |-+..+++ .+..++++..+.+..+....+|...+.+.+.+.+.++
T Consensus 41 ~~~~~~~~~~---~~~~~~~~~-------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (611)
T 3izq_1 41 LKAQLQDYQG---WDNLSLKLA-------LFDNNFDL---ESTLAELKKTLKKKKTPKKPIAAANGSANVTQKLANISIS 107 (611)
T ss_dssp HHHHHHHHHC---CCSSHHHHH-------HHHTTTCS---SHHHHHHHHTTCSSSCC-----------------------
T ss_pred HHHHHHHhcC---cchhHHHHH-------HHHhhccH---HHHHHHHHHHhccccccCCCChHHHHHHHHHHHHHhhccc
Confidence 3444444554 888776654 44555555 4445677777777667666677766666666666554
Q ss_pred -----------cC-----------------------------CCCC-----CCCCCCCCCeEEEEEcCCCCcHHHHHHHH
Q 011076 87 -----------LD-----------------------------PGKP-----SFTPKKGKPSVIMFVGLQGSGKTTTCTKY 121 (494)
Q Consensus 87 -----------l~-----------------------------~~~~-----~~~~~~~~~~vI~lvG~~GvGKTTl~~kL 121 (494)
++ .... ...........|+++|.+|+|||||+++|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~k~~lkV~ivG~~n~GKSTLin~L 187 (611)
T 3izq_1 108 QQRPNDRLPDWLDEEESEGERNGEEANDEKTVQRYYKTTVPTKPKKPHDISAFVKSALPHLSFVVLGHVDAGKSTLMGRL 187 (611)
T ss_dssp -----------------------------------------------------CCCCCCCCEEEEECCSSSCHHHHHHHH
T ss_pred ccccchhcccccccccccccccccchhhhhhhhhhhhccccCCCCcchhHHHHHhccCCceEEEEEECCCCCHHHHHHHH
Confidence 00 0000 00011223457999999999999999999
Q ss_pred HHHHHhcCCceEEEEccc---------------Ccch-hHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhccCCc
Q 011076 122 AYYHQKKGWKPALVCADT---------------FRAG-AFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCD 185 (494)
Q Consensus 122 A~~l~~~g~kVaiVs~D~---------------~r~~-a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~~~d 185 (494)
. +....+. .|. +..+ ..+++...-. .++.+..... .+...++.
T Consensus 188 l------~~~~~i~-~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~-~GiTid~~~~-------------~~~~~~~~ 246 (611)
T 3izq_1 188 L------YDLNIVN-QSQLRKLQRESETMGKSSFKFAWIMDQTNEERE-RGVTVSICTS-------------HFSTHRAN 246 (611)
T ss_dssp H------SCSSCSC-CHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHH-TTTCCSCSCC-------------EEECSSCE
T ss_pred H------HhcCCcc-HHHHHHHHhhhhhccccccceeeeeccchhhhh-CCeeEeeeeE-------------EEecCCce
Confidence 8 4322221 110 0000 0122211111 1221110000 11123678
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCc---------ccHHHHHHHHhc-cCCeeEEEEeCccCCC
Q 011076 186 LIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG---------QAAFDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 186 vIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g---------~~~~~~~~~f~~-~~~i~~vVltK~D~~~ 254 (494)
+.|+||||..... .. .+..+..+|.+++|+|++.| ......+..... .++..++|+||+|...
T Consensus 247 ~~iiDTPG~e~f~----~~--~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 247 FTIVDAPGHRDFV----PN--AIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp EEEEECCSSSCHH----HH--HTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTT
T ss_pred EEEEECCCCcccH----HH--HHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccc
Confidence 9999999986422 11 12234568999999999864 122222222222 2343588999999865
No 68
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.22 E-value=1.1e-11 Score=120.71 Aligned_cols=172 Identities=17% Similarity=0.188 Sum_probs=92.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
++..|+|+|.+||||||+++.|. +.++...+..+. .+++.......
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~------~~~~~~~~~~~~----------~~t~~~~~~~~------------------ 66 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSIL------RKQAFESKLGSQ----------TLTKTCSKSQG------------------ 66 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH------TSCCSCCCTTSC----------CCCCSCEEEEE------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHh------CCCCcccCCCCC----------ceeeeeEEEEE------------------
Confidence 35679999999999999999999 766544332110 01111110000
Q ss_pred hccCCcEEEEeCCCCCchh---HHHHHHHHHHH--HhcCCCEEEEEecCCCcccH-HHHHHHHhcc-----CCeeEEEEe
Q 011076 180 KKENCDLIIVDTSGRHKQE---AALFEEMRQVS--EATNPDLVIFVMDSSIGQAA-FDQAQAFKQS-----VSVGAVIVT 248 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~---~~l~~el~~i~--~~~~~d~vllVvDa~~g~~~-~~~~~~f~~~-----~~i~~vVlt 248 (494)
...+.+++|+||||..... ....+++.... ....+|.+++|+|++.-... ......+.+. ..+..+|+|
T Consensus 67 ~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~ 146 (260)
T 2xtp_A 67 SWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFT 146 (260)
T ss_dssp EETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred EeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEE
Confidence 0125689999999986432 22333333222 23468999999999752211 1122222221 123477777
Q ss_pred -CccCCCCccchhHHHHhcCCC-eE-Eecccccccc-ccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 249 -KMDGHAKGGGALSAVAATKSP-VI-FIGTGEHMDE-FEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 249 -K~D~~~~~g~~ls~~~~~g~P-i~-fi~~Ge~i~~-l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
|+|.... ............ +. ++ +.+.. +.+|.+ ..+|+..|.| ++.|++.+.+.++
T Consensus 147 nK~Dl~~~--~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~-~~~SA~~~~g-v~~l~~~i~~~~~ 207 (260)
T 2xtp_A 147 HKEDLNGG--SLMDYMHDSDNKALSKLV---AACGGRICAFNN-RAEGSNQDDQ-VKELMDCIEDLLM 207 (260)
T ss_dssp CGGGGTTC--CHHHHHHHCCCHHHHHHH---HHTTTCEEECCT-TCCHHHHHHH-HHHHHHHHHHHHH
T ss_pred cccccCCc--cHHHHHHhcchHHHHHHH---HHhCCeEEEecC-cccccccHHH-HHHHHHHHHHHHH
Confidence 9998632 122211100000 00 00 11111 112555 6789999999 9999998877653
No 69
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.21 E-value=4.1e-11 Score=109.45 Aligned_cols=154 Identities=18% Similarity=0.195 Sum_probs=89.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|++||||||+++.|+ +.+...++. .+.+++....-.. .
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~------~~~~~~~~~-----------~~~~t~~~~~~~~------------------~ 48 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALA------GREAAIVTD-----------IAGTTRDVLREHI------------------H 48 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH------TSCCSCCCS-----------STTCCCSCEEEEE------------------E
T ss_pred CCEEEEECCCCCCHHHHHHHHh------CCCcceeeC-----------CCCceeceeeEEE------------------E
Confidence 3569999999999999999999 655433332 1111211110000 0
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHH-HH-HHHHhcCCCEEEEEecCCCccc--HHHHHHHHhc----cCCeeEEEEeCccC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEE-MR-QVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQ----SVSVGAVIVTKMDG 252 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~e-l~-~i~~~~~~d~vllVvDa~~g~~--~~~~~~~f~~----~~~i~~vVltK~D~ 252 (494)
..+.++.++||||........... +. .......+|.+++|+|++.... .......+.+ ..|+ .+|+||+|.
T Consensus 49 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl 127 (172)
T 2gj8_A 49 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPI-TVVRNKADI 127 (172)
T ss_dssp ETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCE-EEEEECHHH
T ss_pred ECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCE-EEEEECccC
Confidence 123467899999986432111111 11 1223457899999999975432 2222222222 2444 899999997
Q ss_pred CCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 253 ~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
.... . .+. . ....+...+|++.|.| ++.|++.+.+.+.
T Consensus 128 ~~~~---~----------~~~-------~-~~~~~~~~~SA~~g~g-v~~l~~~l~~~~~ 165 (172)
T 2gj8_A 128 TGET---L----------GMS-------E-VNGHALIRLSARTGEG-VDVLRNHLKQSMG 165 (172)
T ss_dssp HCCC---C----------EEE-------E-ETTEEEEECCTTTCTT-HHHHHHHHHHHC-
T ss_pred Ccch---h----------hhh-------h-ccCCceEEEeCCCCCC-HHHHHHHHHHHhh
Confidence 4221 0 000 0 0123456799999999 9999999988874
No 70
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=99.20 E-value=5.3e-11 Score=118.00 Aligned_cols=146 Identities=15% Similarity=0.110 Sum_probs=84.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHH------------HHhhh-------------hccC
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQ------------LKQNA-------------TKAK 156 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~q------------Lk~~~-------------~~~~ 156 (494)
++|+|.|..|+||||++.+||.+|+++|++|++||+|++.+..... +.... ...+
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~~ 82 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVLKAGYGG 82 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHHHCCSSCCBHHHHHHTTSSGGGCCHHHHCEECGGG
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCHHHHhcCCCCCCcHHHHHhcccccccCCHHHhhccCCCC
Confidence 5788889999999999999999999999999999999987544221 11100 0112
Q ss_pred cceeccCCCC-C---h-HHH--HHHHHHHHh--ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc
Q 011076 157 IPFYGSYTES-D---P-VRI--AVEGVETFK--KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ 227 (494)
Q Consensus 157 i~~~~~~~~~-d---p-~~i--~~~~l~~~~--~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~ 227 (494)
+.+....... . . ... ....+..+. ...||||||||||....+. +.. ......+|.+++|+.+....
T Consensus 83 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~ViID~~~~~~~~~-~~~----~~~~~~aD~viiv~~~~~~s 157 (289)
T 2afh_E 83 VKCVESGGPEPGVGCAGRGVITAINFLEEEGAYEDDLDFVFYDVLGDVVCGG-FAM----PIRENKAQEIYIVCSGEMMA 157 (289)
T ss_dssp CEEEECCCCCTTTCCHHHHHHHHHHHHHHTTCSSTTCSEEEEEEECSSCCTT-TTH----HHHTTCCCEEEEEECSSHHH
T ss_pred eEEEeCCCccccccccchhhhHHHHHHHHHHhhccCCCEEEEeCCCccccch-hhh----hhhhhhCCEEEEEecCCHHH
Confidence 2222211100 0 0 011 111222222 3479999999998753321 100 01123589999999876321
Q ss_pred -c-H---HHHHHHHhc--cCCeeEEEEeCccC
Q 011076 228 -A-A---FDQAQAFKQ--SVSVGAVIVTKMDG 252 (494)
Q Consensus 228 -~-~---~~~~~~f~~--~~~i~~vVltK~D~ 252 (494)
. . .+.+..+.+ .+++.++|+|+.+.
T Consensus 158 ~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 158 MYAANNISKGIVKYANSGSVRLGGLICNSRNT 189 (289)
T ss_dssp HHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 1 1 122233322 24456899999874
No 71
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.20 E-value=1.2e-10 Score=111.13 Aligned_cols=162 Identities=15% Similarity=0.139 Sum_probs=90.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
+...|+|+|.+||||||+++.|. +.+.. ++. ...+++. +.+.. ..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~------~~~~~-~~~-----------~~~~t~~-~~~~~-~~--------------- 72 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVS------RANVD-VQS-----------YSFTTKN-LYVGH-FD--------------- 72 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHT------TTCEE-EEC-----------C-----C-EEEEE-EE---------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHh------CCCCc-cCC-----------CCCccee-eeeee-ee---------------
Confidence 35679999999999999999998 66554 222 1111111 11100 00
Q ss_pred hccCCcEEEEeCCCCCch-----hHHHHHHHHHHHHhcCCCEEEEEecCCCccc-----HHHHHHHHhc---cCCeeEEE
Q 011076 180 KKENCDLIIVDTSGRHKQ-----EAALFEEMRQVSEATNPDLVIFVMDSSIGQA-----AFDQAQAFKQ---SVSVGAVI 246 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~-----~~~l~~el~~i~~~~~~d~vllVvDa~~g~~-----~~~~~~~f~~---~~~i~~vV 246 (494)
..++.+.|+||||.... .......+..+ ...+|.+++|+|++.... .......+.. ..|+ .+|
T Consensus 73 -~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~pi-ilv 148 (228)
T 2qu8_A 73 -HKLNKYQIIDTPGLLDRAFENRNTIEMTTITAL--AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSI-VIG 148 (228)
T ss_dssp -ETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHH--HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCE-EEE
T ss_pred -cCCCeEEEEECCCCcCcccchhhhHHHHHHHHh--hccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcE-EEE
Confidence 12467899999998431 11111122221 345688999999975422 1223344443 3444 899
Q ss_pred EeCccCCCCccchhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 247 VTKMDGHAKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 247 ltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
+||+|.............. .+.+ ....++.+...+|+..|.| ++.+++.+.+.+
T Consensus 149 ~nK~Dl~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~SA~~g~g-i~~l~~~l~~~i 203 (228)
T 2qu8_A 149 FNKIDKCNMDSLSIDNKLL----------IKQILDNVKNPIKFSSFSTLTGVG-VEQAKITACELL 203 (228)
T ss_dssp EECGGGCC--CCCHHHHHH----------HHHHHHHCCSCEEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred EeCcccCCchhhHHHHHHH----------HHHHHHhcCCCceEEEEecccCCC-HHHHHHHHHHHH
Confidence 9999985432111110000 0011 1111123556789999999 999999998876
No 72
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.20 E-value=2.4e-11 Score=119.37 Aligned_cols=155 Identities=21% Similarity=0.205 Sum_probs=91.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|+ |.+.. +.. .+..+..... ... .
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~------g~~~~-~~~-----------~pg~tv~~~~--~~~----------------~ 48 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALT------GTKQY-VAN-----------WPGVTVEKKE--GVF----------------T 48 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------TTCEE-EEE-----------CTTSCCEEEE--EEE----------------E
T ss_pred ceEEEEECCCCCCHHHHHHHHH------CCCCc-ccC-----------CCCceEEEEE--EEE----------------E
Confidence 3569999999999999999999 76654 222 1111111000 000 0
Q ss_pred ccCCcEEEEeCCCCCchhHH-HHHHHH-HHHHhcCCCEEEEEecCCCcccHHHHHHHHhc-cCCeeEEEEeCccCCCCcc
Q 011076 181 KENCDLIIVDTSGRHKQEAA-LFEEMR-QVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGG 257 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~-l~~el~-~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~-~~~i~~vVltK~D~~~~~g 257 (494)
..++.+.|+||||....... ..+.+. .......+|.+++|+|++...........+.+ ..|+ .+|+||+|.....+
T Consensus 49 ~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pv-ilv~NK~Dl~~~~~ 127 (258)
T 3a1s_A 49 YKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKV-ILAMTAIDEAKKTG 127 (258)
T ss_dssp ETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHHHHHHHHHTTTCCE-EEEEECHHHHHHTT
T ss_pred ECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHHHHHHHHHhcCCCE-EEEEECcCCCCccc
Confidence 12568899999998543211 111121 22223578999999999875544443334433 2444 99999999743322
Q ss_pred ch---hHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 258 GA---LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 258 ~~---ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.. ..+....| .|...+|+..|.| ++.|++.+.+..
T Consensus 128 i~~~~~~l~~~lg------------------~~vi~~SA~~g~g-i~el~~~i~~~~ 165 (258)
T 3a1s_A 128 MKIDRYELQKHLG------------------IPVVFTSSVTGEG-LEELKEKIVEYA 165 (258)
T ss_dssp CCBCHHHHHHHHC------------------SCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcC------------------CCEEEEEeeCCcC-HHHHHHHHHHHh
Confidence 11 11222122 2456688888998 988888887754
No 73
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=99.17 E-value=9.9e-11 Score=114.17 Aligned_cols=145 Identities=19% Similarity=0.202 Sum_probs=85.1
Q ss_pred CCeEEEEE-cCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhh---------hh---------ccCccee
Q 011076 100 KPSVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQN---------AT---------KAKIPFY 160 (494)
Q Consensus 100 ~~~vI~lv-G~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~---------~~---------~~~i~~~ 160 (494)
..++|+|+ +..|+||||++.+||.+|+++|++|++|++|++.+.+ ..+... .. ..++.+.
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~-~~l~~~~~~~l~~~l~~~~~~~~i~~~~~l~vl 83 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNAT-SGLGVRAERGVYHLLQGEPLEGLVHPVDGFHLL 83 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCHHH-HHTTCCCSCCHHHHHTTCCGGGTCEEETTEEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCcCHH-HHhCCCCCCCHHHHHcCCCHHHHccccCCEEEE
Confidence 35678887 5669999999999999999999999999999975422 111100 00 1223332
Q ss_pred ccCCCCChHHHHH------HHHHHHh-ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc-c----
Q 011076 161 GSYTESDPVRIAV------EGVETFK-KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ-A---- 228 (494)
Q Consensus 161 ~~~~~~dp~~i~~------~~l~~~~-~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~-~---- 228 (494)
+.. ..+..... ..+..+. ...||+||||||+..... .. .....+|.+++|+++.... .
T Consensus 84 p~~--~~~~~~~~~l~~~~~~l~~~l~~~~yD~iiiD~pp~~~~~--~~------~~l~~aD~viiv~~~~~~s~~~~~~ 153 (257)
T 1wcv_1 84 PAT--PDLVGATVELAGAPTALREALRDEGYDLVLLDAPPSLSPL--TL------NALAAAEGVVVPVQAEYYALEGVAG 153 (257)
T ss_dssp CCC--TTHHHHHHHHTTCTTHHHHHCCCTTCSEEEEECCSSCCHH--HH------HHHHHCSEEEEEEESSTHHHHHHHH
T ss_pred eCC--hhHHHHHHHHhhHHHHHHHHhcccCCCEEEEeCCCCCCHH--HH------HHHHHCCeEEEEecCchHHHHHHHH
Confidence 211 11111100 1222221 168999999999876422 11 1112479999999986421 1
Q ss_pred HHHHHHHHh----ccCCeeEEEEeCccCCCC
Q 011076 229 AFDQAQAFK----QSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 229 ~~~~~~~f~----~~~~i~~vVltK~D~~~~ 255 (494)
..+.+..+. ..+++.++|+|++|....
T Consensus 154 ~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~ 184 (257)
T 1wcv_1 154 LLATLEEVRAGLNPRLRLLGILVTMYDGRTL 184 (257)
T ss_dssp HHHHHHHHHHHTCTTCEEEEEEEESBCTTCS
T ss_pred HHHHHHHHHHHhCCCceEEEEEEEeECCCcH
Confidence 122222222 234556899999987543
No 74
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.16 E-value=1.1e-10 Score=123.11 Aligned_cols=166 Identities=19% Similarity=0.213 Sum_probs=94.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
.+..|+++|+|||||||+++.|+ |....+++. .+.+++.-.....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~------g~~~~~v~~-----------~~gtT~d~~~~~i------------------ 223 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAIL------NKERALVSP-----------IPGTTRDPVDDEV------------------ 223 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHH------TSTTEEECC-----------CC------CCEEE------------------
T ss_pred cCceEEEECCCCCCHHHHHHHHh------CCcccccCC-----------CCCCcCCceEEEE------------------
Confidence 35679999999999999999999 887777766 2223332211000
Q ss_pred hccCCcEEEEeCCCCCchhHHH------HHHHHHHHHhcCCCEEEEEecCCCcccHHH--HHHHHhccCCeeEEEEeCcc
Q 011076 180 KKENCDLIIVDTSGRHKQEAAL------FEEMRQVSEATNPDLVIFVMDSSIGQAAFD--QAQAFKQSVSVGAVIVTKMD 251 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~~~l------~~el~~i~~~~~~d~vllVvDa~~g~~~~~--~~~~f~~~~~i~~vVltK~D 251 (494)
...+.++.++||||........ ...+........+|.+++|+|++.+....+ ........-....+|+||+|
T Consensus 224 ~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~D 303 (439)
T 1mky_A 224 FIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWD 303 (439)
T ss_dssp EETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGG
T ss_pred EECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcc
Confidence 0124578899999974322110 000111222335799999999986543322 22222222233489999999
Q ss_pred CCCCccchhH-HHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 252 GHAKGGGALS-AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 252 ~~~~~g~~ls-~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.......... +..... +.+. ...+.|..++|++.|.| ++.|++.+.+.+
T Consensus 304 l~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~SA~~g~g-v~~l~~~i~~~~ 353 (439)
T 1mky_A 304 LVVHREKRYDEFTKLFR---------EKLY-FIDYSPLIFTSADKGWN-IDRMIDAMNLAY 353 (439)
T ss_dssp GSTTGGGCHHHHHHHHH---------HHCG-GGTTSCEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHH---------HHhc-cCCCCcEEEEECCCCCC-HHHHHHHHHHHH
Confidence 8654321111 110000 1111 12345667899999999 999999998765
No 75
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=99.13 E-value=5.7e-10 Score=105.77 Aligned_cols=127 Identities=20% Similarity=0.240 Sum_probs=80.9
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 103 VIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 103 vI~lv-G~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
+|+|+ +..|+||||++.+||.+|+++| +|++|++|++.... ..+.. . .+|+.... . ..+..+ .
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~-~~~~~--~--~l~~~vi~-----~----~~l~~l-~ 65 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSAT-GWGKR--G--SLPFKVVD-----E----RQAAKY-A 65 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHH-HHHHH--S--CCSSEEEE-----G----GGHHHH-G
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHH-HHhcC--C--CCCcceeC-----H----HHHHHh-h
Confidence 56666 6679999999999999999999 99999999986543 22211 1 12221000 0 033344 3
Q ss_pred cCCcEEEEeCCCC-CchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc--cHHHHHHHHhc--cCCeeEEEEeCccCCC
Q 011076 182 ENCDLIIVDTSGR-HKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQ--SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 182 ~~~dvIIIDTaG~-~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~--~~~~~~~~f~~--~~~i~~vVltK~D~~~ 254 (494)
..||+|||||||. .... . ......+|.+++|+++.... ......+.+.+ ..+ .++|+|++|...
T Consensus 66 ~~yD~viiD~p~~~~~~~--~------~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~~ 134 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDED--L------EALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNR-FRILLTIIPPYP 134 (209)
T ss_dssp GGCSEEEEEEECCCSSSH--H------HHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSS-EEEEECSBCCTT
T ss_pred hcCCEEEEeCCCCcCcHH--H------HHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCC-EEEEEEecCCcc
Confidence 5799999999887 5332 1 11223679999999886421 12223333433 345 489999999765
No 76
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.12 E-value=8.1e-11 Score=106.34 Aligned_cols=154 Identities=18% Similarity=0.104 Sum_probs=85.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|++||||||+++.|+ |.+.. ++. .+..+........ ..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~------~~~~~-~~~-----------~~~~t~~~~~~~~------------------~~ 47 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALT------GENVY-IGN-----------WPGVTVEKKEGEF------------------EY 47 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHH------CCSSS-CC----------------CCCCCEEEE------------------EE
T ss_pred cEEEEECCCCCCHHHHHHHHh------CCCee-ccC-----------CCCcceeeeEEEE------------------EE
Confidence 469999999999999999998 54321 000 0111111000000 01
Q ss_pred cCCcEEEEeCCCCCchhH-HHHHHHH-HHHHhcCCCEEEEEecCCCcccHHHHHHHHhc-cCCeeEEEEeCccCCCCcc-
Q 011076 182 ENCDLIIVDTSGRHKQEA-ALFEEMR-QVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGG- 257 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~-~l~~el~-~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~-~~~i~~vVltK~D~~~~~g- 257 (494)
.+..+.++||||...... ...+.+. .......++.+++|+|++...........+.+ ..|+ .+|.||+|......
T Consensus 48 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~~~~ 126 (165)
T 2wji_A 48 NGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANL-LLALNKMDLAKSLGI 126 (165)
T ss_dssp TTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHHHHHHHHHHHHTTCCE-EEEEECHHHHHHTTC
T ss_pred CCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhHhHHHHHHHHhcCCCE-EEEEEchHhccccCh
Confidence 245789999999764321 0111121 12222378999999999753322223333332 3444 89999999742111
Q ss_pred --chhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 258 --GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 258 --~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
....+.. .+. .+...+|++.|.| ++.+++.+.+.+
T Consensus 127 ~~~~~~~~~----------------~~~--~~~~~~SA~~~~~-v~~l~~~l~~~~ 163 (165)
T 2wji_A 127 EIDVDKLEK----------------ILG--VKVVPLSAAKKMG-IEELKKAISIAV 163 (165)
T ss_dssp CCCHHHHHH----------------HHT--SCEEECBGGGTBS-HHHHHHHHHHHT
T ss_pred hhHHHHHHH----------------HhC--CCEEEEEcCCCCC-HHHHHHHHHHHh
Confidence 0111111 111 2445689999999 999999987765
No 77
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=99.11 E-value=1.3e-09 Score=108.21 Aligned_cols=115 Identities=19% Similarity=0.178 Sum_probs=72.1
Q ss_pred CeEEEEE-cCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhh------h---ccCc-ceeccCC--CCC
Q 011076 101 PSVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNA------T---KAKI-PFYGSYT--ESD 167 (494)
Q Consensus 101 ~~vI~lv-G~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~------~---~~~i-~~~~~~~--~~d 167 (494)
+++|+|+ +..|+||||++.+||.+|++.|++|++|++|+..+.....+.... . ..++ .+..... ...
T Consensus 4 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~~ 83 (286)
T 2xj4_A 4 TRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENRRAWLDNKKIELPEPLALNLSDNDVALAE 83 (286)
T ss_dssp CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHHHTCCCCCCEEECSSSCHHHHTT
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhCCChhHhHhccccCCCchheEeeCCCCCCcC
Confidence 3578887 456999999999999999999999999999995555433332111 0 1122 2222100 000
Q ss_pred h-----HHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCC
Q 011076 168 P-----VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS 224 (494)
Q Consensus 168 p-----~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~ 224 (494)
+ .....+.+..++ ..||||||||||..... . ......+|.+++|+.+.
T Consensus 84 ~~~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~~--~------~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 84 RPEEEQVAGFEAAFARAM-AECDFILIDTPGGDSAI--T------RMAHGRADLVVTPMNDS 136 (286)
T ss_dssp SCHHHHHHHHHHHHHHHH-HHCSEEEEECCSSCCHH--H------HHHHHTCSEEEEEEESS
T ss_pred hhhhhhHHHHHHHHHHHH-hcCCEEEEcCCCCccHH--H------HHHHHHCCEEEEEEcCC
Confidence 0 112344455543 57999999999876321 1 12234679999999876
No 78
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.10 E-value=7.4e-10 Score=101.63 Aligned_cols=153 Identities=19% Similarity=0.169 Sum_probs=89.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|++||||||+++.|. +.....+... .+.......
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~------~~~~~~~~~t----------------~g~~~~~~~----------------- 56 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLA------SEDISHITPT----------------QGFNIKSVQ----------------- 56 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHC------CSCCEEEEEE----------------TTEEEEEEE-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHh------cCCCCcccCc----------------CCeEEEEEE-----------------
Confidence 4679999999999999999998 5544333220 011100000
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHh-----ccCCeeEEEEeCccC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK-----QSVSVGAVIVTKMDG 252 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~-----~~~~i~~vVltK~D~ 252 (494)
..++.+.++||||........ ......+|.+++|+|++......+ ....+. ...| ..+|.||+|.
T Consensus 57 ~~~~~l~i~Dt~G~~~~~~~~------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl 129 (181)
T 1fzq_A 57 SQGFKLNVWDIGGQRKIRPYW------RSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVP-VLIFANKQDL 129 (181)
T ss_dssp ETTEEEEEEECSSCGGGHHHH------HHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCC-EEEEEECTTS
T ss_pred ECCEEEEEEECCCCHHHHHHH------HHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECcCc
Confidence 125678999999976432111 122347899999999986543222 222221 1234 4899999998
Q ss_pred CCCccchhHHHHhcCCCeEEecccccccccc-ccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 253 ~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~-~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
..... ...+....+ ...+. ...+...+|+..|.| ++++++.+.+.+.
T Consensus 130 ~~~~~-~~~~~~~~~-----------~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~~~ 177 (181)
T 1fzq_A 130 LTAAP-ASEIAEGLN-----------LHTIRDRVWQIQSCSALTGEG-VQDGMNWVCKNVN 177 (181)
T ss_dssp TTCCC-HHHHHHHTT-----------GGGCCSSCEEEEECCTTTCTT-HHHHHHHHHHTC-
T ss_pred ccCCC-HHHHHHHhC-----------chhccCCceEEEEccCCCCCC-HHHHHHHHHHHHH
Confidence 64321 112221111 01011 112345689999999 9999999988774
No 79
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=99.09 E-value=1.1e-09 Score=112.22 Aligned_cols=45 Identities=36% Similarity=0.451 Sum_probs=38.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFD 146 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~ 146 (494)
..++++.|.+|+||||++.+||.+|++.|+||++|++|+ ++...+
T Consensus 26 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~-~~~l~~ 70 (349)
T 3ug7_A 26 TKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP-AHSLRD 70 (349)
T ss_dssp CEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT-TCHHHH
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC-CCCHHH
Confidence 445666699999999999999999999999999999999 454433
No 80
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.09 E-value=1.8e-10 Score=112.17 Aligned_cols=121 Identities=18% Similarity=0.200 Sum_probs=68.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
.+..|+|+|.+||||||++|.|. |.++...+..+ ..+++....... .
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~------~~~~~~~~~~~----------~~~T~~~~~~~~--~--------------- 66 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSIL------GQRRFFSRLGA----------TSVTRACTTGSR--R--------------- 66 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHH------TSCCC-------------------CCSCEEEEE--E---------------
T ss_pred CceEEEEECCCCCcHHHHHHHHh------CCCCccccCCC----------CCccccEEEEEE--E---------------
Confidence 34679999999999999999999 87776554311 011221111111 0
Q ss_pred hccCCcEEEEeCCCCCchhHHH----HHHHHHH--HHhcCCCEEEEEecCCCccc-HHHHHHHHhc----c--CCeeEEE
Q 011076 180 KKENCDLIIVDTSGRHKQEAAL----FEEMRQV--SEATNPDLVIFVMDSSIGQA-AFDQAQAFKQ----S--VSVGAVI 246 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~~~l----~~el~~i--~~~~~~d~vllVvDa~~g~~-~~~~~~~f~~----~--~~i~~vV 246 (494)
..+..++|+||||........ ..++... .....+|.+++|+|++.-.. .......+.+ . -.+..+|
T Consensus 67 -~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv 145 (247)
T 3lxw_A 67 -WDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVF 145 (247)
T ss_dssp -ETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred -ECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEE
Confidence 125678999999986544332 2222211 12357999999999874211 1122222222 1 1234888
Q ss_pred EeCccCCC
Q 011076 247 VTKMDGHA 254 (494)
Q Consensus 247 ltK~D~~~ 254 (494)
.||.|...
T Consensus 146 ~nK~Dl~~ 153 (247)
T 3lxw_A 146 TRKEDLAG 153 (247)
T ss_dssp ECGGGGTT
T ss_pred EchHhcCC
Confidence 99999854
No 81
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.08 E-value=1.7e-09 Score=109.55 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=38.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF 145 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~ 145 (494)
..++++.|.+|+||||++.+||.+++++|+||++|++|+ ++...
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~-~~~l~ 57 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP-AHSLS 57 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS-SCCHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC-CcCHH
Confidence 356666799999999999999999999999999999999 55443
No 82
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.08 E-value=5.3e-10 Score=115.26 Aligned_cols=183 Identities=20% Similarity=0.183 Sum_probs=93.8
Q ss_pred HHHHHHHHhhcCCCCC--CCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhc
Q 011076 77 QAIFNELCKMLDPGKP--SFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATK 154 (494)
Q Consensus 77 ~~v~~eL~~ll~~~~~--~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~ 154 (494)
..+..+|..+...... ....+.+ ..+|+++|++||||||+++.|+ |..+ .++. ...+|+
T Consensus 154 ~~l~~~l~~~~~~r~~~r~~r~~~~-~~~V~lvG~~naGKSTLln~L~------~~~~-~~~~-----------~~~~T~ 214 (364)
T 2qtf_A 154 NKLMKELESIKIFKEKSIESNKRNN-IPSIGIVGYTNSGKTSLFNSLT------GLTQ-KVDT-----------KLFTTM 214 (364)
T ss_dssp HHHHHHHHHHHC--------------CCEEEEECBTTSSHHHHHHHHH------CC-----------------------C
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcC-CcEEEEECCCCCCHHHHHHHHH------CCCc-cccC-----------Cccccc
Confidence 4556666666553211 1111222 3469999999999999999999 6653 3322 222332
Q ss_pred cCcceeccCCCCChHHHHHHHHHHHhccCCcEEEEeCCCCCch-hHHHHHHHHH-HHHhcCCCEEEEEecCCCccc-HH-
Q 011076 155 AKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQ-EAALFEEMRQ-VSEATNPDLVIFVMDSSIGQA-AF- 230 (494)
Q Consensus 155 ~~i~~~~~~~~~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~-~~~l~~el~~-i~~~~~~d~vllVvDa~~g~~-~~- 230 (494)
+-..-.. ...+.++.++||||.... ...+.+.... +.....+|.+++|+|++.... ..
T Consensus 215 d~~~~~i------------------~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~ 276 (364)
T 2qtf_A 215 SPKRYAI------------------PINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIE 276 (364)
T ss_dssp CSCEEEE------------------EETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHH
T ss_pred CCEEEEE------------------EECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHH
Confidence 2111000 012456789999997321 2222222222 233557899999999876431 11
Q ss_pred ------HHHHHHh-ccCCeeEEEEeCccCCCCccch-hHHHHhcCCCeEEecccccc-ccc-cccCccchhhcccCCCCc
Q 011076 231 ------DQAQAFK-QSVSVGAVIVTKMDGHAKGGGA-LSAVAATKSPVIFIGTGEHM-DEF-EVFDVKPFVSRLLGMGDW 300 (494)
Q Consensus 231 ------~~~~~f~-~~~~i~~vVltK~D~~~~~g~~-ls~~~~~g~Pi~fi~~Ge~i-~~l-~~f~p~~~vs~~~G~Gdi 300 (494)
+.+..+. ...+ ..+|+||+|.....-.. ..... .+ ..+ .+..+..++|++.|.| +
T Consensus 277 ~~~~~~~~L~~l~~~~~p-~ilV~NK~Dl~~~~~~~~~~~~~-------------~l~~~l~~~~~~~~~~SA~~g~g-i 341 (364)
T 2qtf_A 277 TLQSSFEILREIGVSGKP-ILVTLNKIDKINGDLYKKLDLVE-------------KLSKELYSPIFDVIPISALKRTN-L 341 (364)
T ss_dssp HHHHHHHHHHHHTCCSCC-EEEEEECGGGCCSCHHHHHHHHH-------------HHHHHHCSCEEEEEECBTTTTBS-H
T ss_pred HHHHHHHHHHHhCcCCCC-EEEEEECCCCCCchHHHHHHHHH-------------HHHHHhcCCCCcEEEEECCCCcC-H
Confidence 1122222 1234 48999999986432100 01110 00 011 1111236789999999 9
Q ss_pred hHHHHHHHHhC
Q 011076 301 SGFMDKIHEVV 311 (494)
Q Consensus 301 ~~L~e~i~~~~ 311 (494)
+.|++.+.+.+
T Consensus 342 ~~L~~~I~~~l 352 (364)
T 2qtf_A 342 ELLRDKIYQLA 352 (364)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988765
No 83
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.07 E-value=1.3e-10 Score=115.10 Aligned_cols=155 Identities=18% Similarity=0.142 Sum_probs=89.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.|||||||+++.|+ |.+.. +.. + | .++.... .+.. .
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~------g~~~~-v~~--~-p--------g~tv~~~--~~~~----------------~ 46 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLIT------GHNQR-VGN--W-P--------GVTVERK--SGLV----------------K 46 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH------CCCCC-CCS--S-S--------CCCCSCE--EEEC----------------T
T ss_pred ceEEEEECCCCCCHHHHHHHHH------CCCCc-ccC--C-C--------CCcEEEE--EEEE----------------e
Confidence 3579999999999999999999 65421 111 0 1 1111110 0100 1
Q ss_pred ccCCcEEEEeCCCCCchhH-HHHHHHH-HHHHhcCCCEEEEEecCCCcccHHHHHHHHhc-cCCeeEEEEeCccCCCCcc
Q 011076 181 KENCDLIIVDTSGRHKQEA-ALFEEMR-QVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGG 257 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~-~l~~el~-~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~-~~~i~~vVltK~D~~~~~g 257 (494)
. ++++.|+||||...... ...+.+. .......+|.+++|+|++...........+.+ ..|+ .+|+||+|.....+
T Consensus 47 ~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~~~~~~~l~~~~~p~-ilv~NK~Dl~~~~~ 124 (272)
T 3b1v_A 47 K-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIPV-TIALNMIDVLDGQG 124 (272)
T ss_dssp T-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTCSCE-EEEEECHHHHHHTT
T ss_pred c-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhHHHHHHHHHhcCCCE-EEEEEChhhCCcCC
Confidence 1 46789999999864321 0111121 12222369999999999764333333333333 3444 89999999743221
Q ss_pred ch---hHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 258 GA---LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 258 ~~---ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
.. ..+....+ .|...+|+..|.| ++.|++.+.+.+.
T Consensus 125 ~~~~~~~l~~~lg------------------~~vi~~SA~~g~g-i~el~~~i~~~~~ 163 (272)
T 3b1v_A 125 KKINVDKLSYHLG------------------VPVVATSALKQTG-VDQVVKKAAHTTT 163 (272)
T ss_dssp CCCCHHHHHHHHT------------------SCEEECBTTTTBS-HHHHHHHHHHSCT
T ss_pred cHHHHHHHHHHcC------------------CCEEEEEccCCCC-HHHHHHHHHHHHh
Confidence 11 11111111 2456789999999 9999999988764
No 84
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.06 E-value=4.3e-10 Score=101.21 Aligned_cols=156 Identities=15% Similarity=0.073 Sum_probs=80.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+...+.. + .+..++..... ..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~------~~~~~~~~~-~---------------~~~~~~~~~~~-------------~~ 48 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFA------GKQERDLHE-Q---------------LGEDVYERTLT-------------VD 48 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------CC-----CC-C---------------SSSSEEEEEEE-------------ET
T ss_pred EEEEEEECCCCccHHHHHHHHh------cCCCccccC-c---------------cccceeEEEEE-------------EC
Confidence 3569999999999999999998 554332211 0 11111110000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHHhc-----cCCeeEEEEeCccC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ-----SVSVGAVIVTKMDG 252 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~~-----~~~i~~vVltK~D~ 252 (494)
...+.+.|+||||....+. ..+ .-.....++.+++|+|.+...... .....+.. ..|+ .+|+||+|.
T Consensus 49 ~~~~~~~~~D~~g~~~~~~---~~~-~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~pi-ilv~NK~Dl 123 (175)
T 2nzj_A 49 GEDTTLVVVDTWEAEKLDK---SWS-QESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPI-ILVGNKADL 123 (175)
T ss_dssp TEEEEEEEECCC----------CHH-HHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCE-EEEEECTTC
T ss_pred CEEEEEEEEecCCCCccch---hhh-HHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCE-EEEEEChhh
Confidence 1245789999999754211 111 112233578999999987543211 11222222 2444 899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 253 ~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
............ +....+ -.+...+|+..|.| ++.+++.+.+.+
T Consensus 124 ~~~~~v~~~~~~------------~~~~~~--~~~~~~~Sa~~g~g-i~~l~~~l~~~~ 167 (175)
T 2nzj_A 124 ARCREVSVEEGR------------ACAVVF--DCKFIETSATLQHN-VAELFEGVVRQL 167 (175)
T ss_dssp TTTCCSCHHHHH------------HHHHHH--TSEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred ccccccCHHHHH------------HHHHHc--CCeEEEEecCCCCC-HHHHHHHHHHHH
Confidence 643211111110 000011 12456689999999 999999887765
No 85
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.06 E-value=1.3e-10 Score=106.39 Aligned_cols=158 Identities=18% Similarity=0.135 Sum_probs=89.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
+..|+++|++||||||+++.|+ +.+.. ++.- + ..+.... .... .
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~------~~~~~-~~~~---~--------~~t~~~~--~~~~----------------~ 50 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALT------GENVY-IGNW---P--------GVTVEKK--EGEF----------------E 50 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------TTCEE-EEEC---T--------TSCCEEE--EEEE----------------E
T ss_pred CCEEEEECCCCCCHHHHHHHHh------CCCcc-ccCC---C--------Ceeccce--EEEE----------------E
Confidence 4579999999999999999998 65432 2210 1 1111000 0000 0
Q ss_pred ccCCcEEEEeCCCCCchhHH-HHHHHH-HHHHhcCCCEEEEEecCCCcccHHHHHHHHhc-cCCeeEEEEeCccCCCCcc
Q 011076 181 KENCDLIIVDTSGRHKQEAA-LFEEMR-QVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGG 257 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~-l~~el~-~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~-~~~i~~vVltK~D~~~~~g 257 (494)
..++.+.|+||||....... ..+.+. .......++.+++|+|++...........+.. ..++ .+|.||+|......
T Consensus 51 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~ 129 (188)
T 2wjg_A 51 YNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANL-LLALNKMDLAKSLG 129 (188)
T ss_dssp ETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGHHHHHHHHHHHHTTTCCE-EEEEECHHHHHHTT
T ss_pred eCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhHHHHHHHHHHHHhcCCCE-EEEEEhhhcccccc
Confidence 12567899999997643210 011111 12222358999999998753322222333333 2344 89999999742211
Q ss_pred ---chhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCCCC
Q 011076 258 ---GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMD 314 (494)
Q Consensus 258 ---~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~~ 314 (494)
....+....+ .+...+|+..|.| ++.+++.+.+.+.+.
T Consensus 130 ~~~~~~~~~~~~~------------------~~~~~~Sa~~~~~-v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 130 IEIDVDKLEKILG------------------VKVVPLSAAKKMG-IEELKKAISIAVKDK 170 (188)
T ss_dssp CCCCHHHHHHHHT------------------SCEEECBGGGTBS-HHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHhC------------------CCeEEEEecCCCC-HHHHHHHHHHHHHhc
Confidence 1111111111 2446689999999 999999998887543
No 86
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.05 E-value=7.8e-10 Score=101.08 Aligned_cols=153 Identities=15% Similarity=0.091 Sum_probs=87.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
+...|+++|.+||||||+++.|. +.+..-...- .+..+...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~------~~~~~~~~~t----------------~~~~~~~~----------------- 60 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFS------MNEVVHTSPT----------------IGSNVEEI----------------- 60 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHH------TTSCEEEECC----------------SSSSCEEE-----------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHh------cCCCCccCCc----------------CceeeEEE-----------------
Confidence 45679999999999999999999 5554222210 01110000
Q ss_pred hccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhc----cCCeeEEEEeCccC
Q 011076 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDG 252 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~----~~~i~~vVltK~D~ 252 (494)
...++.+.|+||||........ ......+|.+++|+|++....... ....+.. .-.+..+|+||+|.
T Consensus 61 ~~~~~~~~i~Dt~G~~~~~~~~------~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 134 (181)
T 2h17_A 61 VINNTRFLMWDIGGQESLRSSW------NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134 (181)
T ss_dssp EETTEEEEEEEESSSGGGTCGG------GGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred EECCEEEEEEECCCCHhHHHHH------HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCc
Confidence 0125788999999985322110 112346899999999986533222 2222221 11234899999998
Q ss_pred CCCccchhHHHHhcCCCeEEecccccccccccc-CccchhhcccCCCCchHHHHHHHHh
Q 011076 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVF-DVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 253 ~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f-~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
..... .-.+....+ ...+... .+...+|+..|.| ++.+++.+.+.
T Consensus 135 ~~~~~-~~~i~~~~~-----------~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~ 180 (181)
T 2h17_A 135 KECMT-VAEISQFLK-----------LTSIKDHQWHIQACCALTGEG-LCQGLEWMMSR 180 (181)
T ss_dssp TTCCC-HHHHHHHTT-----------GGGCCSSCEEEEECBTTTTBT-HHHHHHHHHTC
T ss_pred ccCCC-HHHHHHHhC-----------cccccCCceEEEEccCCCCcC-HHHHHHHHHhh
Confidence 54311 111111111 1111111 1456789999999 99999888653
No 87
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.05 E-value=3.7e-10 Score=100.70 Aligned_cols=154 Identities=12% Similarity=0.044 Sum_probs=83.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|.+||||||+++.|.. .+. .+.+.+. ............ .
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~------~~~----~~~~~~t---------~~~~~~~~~~~~----------------~ 48 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ------GIF----VEKYDPT---------IEDSYRKQVEVD----------------C 48 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH------CCC----CCSCCCC---------SEEEEEEEEESS----------------S
T ss_pred eEEEEECCCCCCHHHHHHHHHc------CCC----CCCCCCC---------ccceEEEEEEEC----------------C
Confidence 4699999999999999999982 211 0111110 000000000000 1
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc---HHHHHHHHhc-----cCCeeEEEEeCccCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ-----SVSVGAVIVTKMDGH 253 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~---~~~~~~~f~~-----~~~i~~vVltK~D~~ 253 (494)
..+.+.|+||||.......... ....+|.+++|+|++.... .......+.. ..|+ .+|+||+|..
T Consensus 49 ~~~~~~l~D~~G~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~ 121 (167)
T 1c1y_A 49 QQCMLEILDTAGTEQFTAMRDL------YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPM-ILVGNKCDLE 121 (167)
T ss_dssp CEEEEEEEEECSSCSSTTHHHH------HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCE-EEEEECTTCG
T ss_pred EEEEEEEEECCChHHHHHHHHH------HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcE-EEEEECcccc
Confidence 2457899999997643321111 1224799999999875421 1112222211 2444 8999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
........... +....+ ...+...+|+..|.| ++.+++.+.+.+
T Consensus 122 ~~~~~~~~~~~------------~~~~~~-~~~~~~~~Sa~~~~g-i~~l~~~l~~~i 165 (167)
T 1c1y_A 122 DERVVGKEQGQ------------NLARQW-CNCAFLESSAKSKIN-VNEIFYDLVRQI 165 (167)
T ss_dssp GGCCSCHHHHH------------HHHHHT-TSCEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred ccccCCHHHHH------------HHHHHc-cCCcEEEecCCCCCC-HHHHHHHHHHHH
Confidence 42111111110 000111 123456789999999 999999887654
No 88
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.05 E-value=3e-10 Score=101.03 Aligned_cols=154 Identities=14% Similarity=0.125 Sum_probs=82.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
+..|+++|.+||||||+++.|. +.+. ...+.+ +. +..+..... ..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~------~~~~----~~~~~~---------t~--~~~~~~~~~--------------~~ 48 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFM------YDEF----VEDYEP---------TK--ADSYRKKVV--------------LD 48 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCC----CSCCCT---------TC--CEEEEEEEE--------------ET
T ss_pred eEEEEEECCCCCCHHHHHHHHH------hCcc----CCCCCC---------Cc--ceEEEEEEE--------------EC
Confidence 3569999999999999999998 3321 111111 00 111100000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---H---HHHHHhc--cCCeeEEEEeCccC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---D---QAQAFKQ--SVSVGAVIVTKMDG 252 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~---~~~~f~~--~~~i~~vVltK~D~ 252 (494)
...+.+.|+||||...... +.. .....+|.+++|+|++...... . .+..... ..|+ .+|+||+|.
T Consensus 49 ~~~~~~~l~D~~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl 121 (168)
T 1u8z_A 49 GEEVQIDILDTAGQEDYAA-IRD-----NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF-LLVGNKSDL 121 (168)
T ss_dssp TEEEEEEEEECCC---CHH-HHH-----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCE-EEEEECGGG
T ss_pred CEEEEEEEEECCCcchhHH-HHH-----HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcE-EEEEECccc
Confidence 1246789999999754322 111 1122579999999998543211 1 1112221 3444 899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 253 ~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
............ +..... ..+...+|+..|.| ++.+++.+.+.+
T Consensus 122 ~~~~~~~~~~~~------------~~~~~~--~~~~~~~Sa~~~~g-i~~l~~~l~~~i 165 (168)
T 1u8z_A 122 EDKRQVSVEEAK------------NRADQW--NVNYVETSAKTRAN-VDKVFFDLMREI 165 (168)
T ss_dssp GGGCCSCHHHHH------------HHHHHH--TCEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred cccCccCHHHHH------------HHHHHc--CCeEEEeCCCCCCC-HHHHHHHHHHHH
Confidence 532111111110 000111 12446689999999 999999887654
No 89
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.04 E-value=4.3e-10 Score=100.77 Aligned_cols=153 Identities=16% Similarity=0.158 Sum_probs=78.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|.+||||||+++.|. +........ ...+ ..++..... ....
T Consensus 4 ki~ivG~~~~GKSsli~~l~------~~~~~~~~~-----------~~~~----~~~~~~~~~-------------~~~~ 49 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG------GLQGDHAHE-----------MENS----EDTYERRIM-------------VDKE 49 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH------CC---------------------------CEEEEEEE-------------ETTE
T ss_pred EEEEECCCCCCHHHHHHHHH------hccCccccc-----------CCCc----CCeeeEEEE-------------ECCe
Confidence 58999999999999999997 432221111 0000 000000000 0012
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc---HHHHHHHHhc-----cCCeeEEEEeCccCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ-----SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~---~~~~~~~f~~-----~~~i~~vVltK~D~~~ 254 (494)
.+.+.++||||.......+... ....+|.+++|+|.+.... .......+.. ..|+ .+|.||+|...
T Consensus 50 ~~~~~i~D~~g~~~~~~~~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~ 123 (169)
T 3q85_A 50 EVTLIVYDIWEQGDAGGWLQDH-----CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV-ILVGNKSDLAR 123 (169)
T ss_dssp EEEEEEECCCCC--------CH-----HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCE-EEEEECTTCGG
T ss_pred EEEEEEEECCCccccchhhhhh-----hhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCE-EEEeeCcchhh
Confidence 4678899999986432211111 1124799999999976432 1122222222 2444 89999999853
Q ss_pred CccchhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.......... .+ ..+ ..+...+|+..|.| ++++++.+.+.+
T Consensus 124 ~~~~~~~~~~-------------~~~~~~--~~~~~~~Sa~~~~~-v~~l~~~l~~~i 165 (169)
T 3q85_A 124 SREVSLEEGR-------------HLAGTL--SCKHIETSAALHHN-TRELFEGAVRQI 165 (169)
T ss_dssp GCCSCHHHHH-------------HHHHHT--TCEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred cccCCHHHHH-------------HHHHHc--CCcEEEecCccCCC-HHHHHHHHHHHH
Confidence 2111111110 01 011 12446689999999 999998887654
No 90
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.04 E-value=4.9e-10 Score=99.21 Aligned_cols=149 Identities=15% Similarity=0.099 Sum_probs=82.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|.+||||||+++.|. +.+.. +.+.+ +. +..+..... ...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~------~~~~~----~~~~~---------~~--~~~~~~~~~--------------~~~ 48 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLI------QNHFV----DECDP---------TI--EDSYRKQVV--------------IDG 48 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHH------HSSCC----SCCCT---------TC--CEEEEEEEE--------------ETT
T ss_pred eEEEEECCCCCCHHHHHHHHH------hCcCc----cccCC---------cc--ceEEEEEEE--------------ECC
Confidence 358999999999999999998 22210 01111 00 000000000 001
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HH---HHHHhc--cCCeeEEEEeCccCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQ---AQAFKQ--SVSVGAVIVTKMDGH 253 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~---~~~f~~--~~~i~~vVltK~D~~ 253 (494)
..+++.|+||||........ . .....+|.+++|+|++...... .. +..+.. ..|+ .+|+||+|..
T Consensus 49 ~~~~~~~~D~~G~~~~~~~~-~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~-iiv~nK~Dl~ 121 (166)
T 2ce2_X 49 ETCLLDILDTAGQEEYSAMR-D-----QYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM-VLVGNKSDLA 121 (166)
T ss_dssp EEEEEEEEECCCCSSCCHHH-H-----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCE-EEEEECTTCS
T ss_pred EEEEEEEEECCCchhhhHHH-H-----HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcE-EEEEEchhhh
Confidence 24678999999976433211 1 1122478999999987543211 11 122221 3444 8999999986
Q ss_pred CCccch---hHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 254 AKGGGA---LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 254 ~~~g~~---ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.+.... .......+ .+...+|+..|.| ++.+++.+.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~l~~~l~~~~ 163 (166)
T 2ce2_X 122 ARTVESRQAQDLARSYG------------------IPYIETSAKTRQG-VEDAFYTLVREI 163 (166)
T ss_dssp CCCSCHHHHHHHHHHHT------------------CCEEEECTTTCTT-HHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHcC------------------CeEEEecCCCCCC-HHHHHHHHHHHH
Confidence 532111 11111111 2445679999999 999998887654
No 91
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.04 E-value=6.1e-10 Score=123.99 Aligned_cols=85 Identities=7% Similarity=-0.079 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCC
Q 011076 32 LNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQG 111 (494)
Q Consensus 32 l~ei~~aLl~adv~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~i~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~lvG~~G 111 (494)
+.+|+..|+++-..++...+|.+.... .......+ ......+...+..+.. .+..|+++|.+|
T Consensus 17 ~~~~r~~L~~~l~~le~~ld~~e~~~~---~~~~~~~l---~~~l~~L~~~~~~l~~-----------~~~~V~VvG~~n 79 (695)
T 2j69_A 17 VAQVRSEMSVCLNKLAETINKAELAGD---SSSGKLSL---ERDIEDITIASKNLQQ-----------GVFRLLVLGDMK 79 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTT---TTTCCCCC---HHHHHHHHHHHHHHHH-----------CCEEEEEECCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc---cchhhhHH---HHHHHHHHHHHHHhcc-----------CCCEEEEECCCC
Confidence 345677777665556666666553100 00000011 1223445555544422 245699999999
Q ss_pred CcHHHHHHHHHHHHHhcCCceEEEEccc
Q 011076 112 SGKTTTCTKYAYYHQKKGWKPALVCADT 139 (494)
Q Consensus 112 vGKTTl~~kLA~~l~~~g~kVaiVs~D~ 139 (494)
|||||++|+|. |.+++.++.++
T Consensus 80 aGKSSLlNaLl------g~~~~~v~~~p 101 (695)
T 2j69_A 80 RGKSTFLNALI------GENLLPSDVNP 101 (695)
T ss_dssp SCHHHHHHHHH------TSSCSCCCCCT
T ss_pred CCHHHHHHHHh------CCCCCCCCCCC
Confidence 99999999999 88887776644
No 92
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.04 E-value=4.4e-10 Score=121.30 Aligned_cols=67 Identities=16% Similarity=0.267 Sum_probs=44.1
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH--HHHHHhc-cCCeeEEEEeCccCCCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD--QAQAFKQ-SVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~--~~~~f~~-~~~i~~vVltK~D~~~~ 255 (494)
.++.+.|+||||........ ......+|.+++|+|++.+..... ....... .+|+ .+|+||+|....
T Consensus 80 ~~~~i~liDTPG~~df~~~~------~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPi-ivviNK~Dl~~~ 149 (528)
T 3tr5_A 80 KDYLINLLDTPGHADFTEDT------YRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPI-MTFINKMDRDTR 149 (528)
T ss_dssp TTEEEEEECCCCSTTCCHHH------HHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCE-EEEEECTTSCCS
T ss_pred CCEEEEEEECCCchhHHHHH------HHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEeCCCCccc
Confidence 36789999999986544322 222346899999999997654332 2222222 2454 899999998543
No 93
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.04 E-value=4.4e-10 Score=104.89 Aligned_cols=161 Identities=13% Similarity=0.102 Sum_probs=84.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
+..|+++|++||||||+++.|. +.+..... | + .+..... ..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~------~~~~~~~~-----~----------t-~~~~~~~-----------------~~ 65 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLK------DDRLGQHV-----P----------T-LHPTSEE-----------------LT 65 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHS------CC-----------C----------C-CCCSCEE-----------------EE
T ss_pred CcEEEEECCCCCCHHHHHHHHh------cCCCCccC-----C----------C-CCceeEE-----------------EE
Confidence 4569999999999999999998 54432111 1 0 0000000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHh-----ccCCeeEEEEeCccC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK-----QSVSVGAVIVTKMDG 252 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~-----~~~~i~~vVltK~D~ 252 (494)
..++++.++||||...... +. ......+|.+++|+|++......+ ....+. ...|+ .+|.||+|.
T Consensus 66 ~~~~~l~i~Dt~G~~~~~~-----~~-~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~NK~Dl 138 (198)
T 1f6b_A 66 IAGMTFTTFDLGGHIQARR-----VW-KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPI-LILGNKIDR 138 (198)
T ss_dssp ETTEEEEEEEECC----CC-----GG-GGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCE-EEEEECTTS
T ss_pred ECCEEEEEEECCCcHhhHH-----HH-HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcE-EEEEECCCc
Confidence 1246889999999643211 00 011236899999999986543222 222221 12344 899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccccc---cccc-cccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 253 HAKGGGALSAVAATKSPVIFIGTGEH---MDEF-EVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 253 ~~~~g~~ls~~~~~g~Pi~fi~~Ge~---i~~l-~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.... ..-.+....+..- +..++. +.+. ....+...+|++.|.| ++.+++.+.+.+
T Consensus 139 ~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g-v~~l~~~l~~~l 197 (198)
T 1f6b_A 139 PEAI-SEERLREMFGLYG--QTTGKGSVSLKELNARPLEVFMCSVLKRQG-YGEGFRWMAQYI 197 (198)
T ss_dssp TTCC-CHHHHHHHHTCTT--TCCCSSCCCTTTCCSCCEEEEECBTTTTBS-HHHHHHHHHTTC
T ss_pred cccC-CHHHHHHHhCccc--ccccccccccccccCceEEEEEEECCCCCC-HHHHHHHHHHhc
Confidence 6421 1111222112110 111111 1110 1223456789999999 999999987654
No 94
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=99.03 E-value=3.2e-09 Score=107.29 Aligned_cols=163 Identities=15% Similarity=0.127 Sum_probs=92.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhH-----------HHHHhhh--------------h
Q 011076 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-----------DQLKQNA--------------T 153 (494)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~-----------~qLk~~~--------------~ 153 (494)
...++|++.|..|||||||+.+||..|++.|+||++|++|++..... +...... .
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~ 125 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFEG 125 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEEC
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccCCCCCcchhhHhhhccccccccHhHheeec
Confidence 34689999999999999999999999999999999999998654331 1111000 0
Q ss_pred ccCcceeccCCC----CChHHHHHHHHHHH----hccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011076 154 KAKIPFYGSYTE----SDPVRIAVEGVETF----KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSI 225 (494)
Q Consensus 154 ~~~i~~~~~~~~----~dp~~i~~~~l~~~----~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~ 225 (494)
..++.+...... ..........+..+ ..+.||++++|+||-..... + ......+|.+++|+.+..
T Consensus 126 ~~~i~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~D~v~iD~~~~~~~~~-~------~~al~aAd~viIvt~~e~ 198 (314)
T 3fwy_A 126 FNGVMCVEAGGPPAGTGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGG-F------AAPLQHADQAVVVTANDF 198 (314)
T ss_dssp GGGCEEEECCCCCTTCSCTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGG-G------GGGGGTCSEEEEEECSSH
T ss_pred CCCeEEEeCCCCcccchhhhccHHHHHHHHHhcchhhcCceEeeccCCcchhhh-h------HhHHhhCCeEEEEeCCcH
Confidence 011211111110 00111122222222 23579999999987643221 0 012346899999998752
Q ss_pred c--ccHHH---HHHHHhcc--CCeeEEEEeCccCCCCccchhHHHHhcCCCeE
Q 011076 226 G--QAAFD---QAQAFKQS--VSVGAVIVTKMDGHAKGGGALSAVAATKSPVI 271 (494)
Q Consensus 226 g--~~~~~---~~~~f~~~--~~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~ 271 (494)
- .+..+ .++.+... .++.++|+|+.+... ..-.++...+.|+.
T Consensus 199 ~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~~---~v~~~a~~~~~~~l 248 (314)
T 3fwy_A 199 DSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRATD---EVDRFCKETNFRRL 248 (314)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCCH---HHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCchh---HHHHHHHHhCCeEE
Confidence 1 11222 22333332 345689999876432 23445555666654
No 95
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.03 E-value=4.7e-10 Score=103.41 Aligned_cols=155 Identities=21% Similarity=0.154 Sum_probs=89.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
.+..|+|+|.+||||||+++.|. +.+...+...+ ..+..+...
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~------~~~~~~~~~~~--------------t~~~~~~~~----------------- 58 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVK------PAQSSSKHITA--------------TVGYNVETF----------------- 58 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHS------CCC----CCCC--------------CSSEEEEEE-----------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHh------cCCCccccccc--------------ccceeEEEE-----------------
Confidence 45679999999999999999998 65544332111 011111110
Q ss_pred hccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhc------------cCCeeE
Q 011076 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ------------SVSVGA 244 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~------------~~~i~~ 244 (494)
....+.+.|+||||........ ......+|.+++|+|++....... ....+.. ..++ .
T Consensus 59 ~~~~~~~~i~Dt~G~~~~~~~~------~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~pi-i 131 (199)
T 4bas_A 59 EKGRVAFTVFDMGGAKKFRGLW------ETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPF-L 131 (199)
T ss_dssp EETTEEEEEEEECCSGGGGGGG------GGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCE-E
T ss_pred EeCCEEEEEEECCCCHhHHHHH------HHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCE-E
Confidence 0136788999999985432111 011336899999999986543221 2222211 3444 8
Q ss_pred EEEeCccCCCCccchhHHHHhcCCCeEEeccccccccc-c-ccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 245 VIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEF-E-VFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 245 vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l-~-~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
+|+||+|...... ...+....+ ...+ . ...+...+|++.|.| ++.+++.+.+.+
T Consensus 132 lv~NK~Dl~~~~~-~~~~~~~~~-----------~~~~~~~~~~~~~~~Sa~~g~g-v~~l~~~l~~~~ 187 (199)
T 4bas_A 132 FFANKMDAAGAKT-AAELVEILD-----------LTTLMGDHPFVIFASNGLKGTG-VHEGFSWLQETA 187 (199)
T ss_dssp EEEECTTSTTCCC-HHHHHHHHT-----------HHHHHTTSCEEEEECBTTTTBT-HHHHHHHHHHHH
T ss_pred EEEECcCCCCCCC-HHHHHHHhc-----------chhhccCCeeEEEEeeCCCccC-HHHHHHHHHHHH
Confidence 9999999865421 111211111 0000 0 112446689999999 999999988765
No 96
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.02 E-value=4.8e-10 Score=101.83 Aligned_cols=154 Identities=13% Similarity=0.115 Sum_probs=84.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+. .+.+.+ ++ +..+..... ..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~------~~~~----~~~~~~---------t~--~~~~~~~~~--------------~~ 62 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFM------YDEF----VEDYEP---------TK--ADSYRKKVV--------------LD 62 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCC----CCSCCT---------TC--CEEEEEEEE--------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHh------hCCC----CCcCCC---------cc--ceEEEEEEE--------------EC
Confidence 4579999999999999999998 3321 111111 00 111100000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---H---HHHHHhc--cCCeeEEEEeCccC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---D---QAQAFKQ--SVSVGAVIVTKMDG 252 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~---~~~~f~~--~~~i~~vVltK~D~ 252 (494)
...+.+.|+||||........ . .....+|.+++|+|++...... . .+..... ..|+ .+|+||+|.
T Consensus 63 ~~~~~~~l~Dt~G~~~~~~~~-~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl 135 (187)
T 2a9k_A 63 GEEVQIDILDTAGQEDYAAIR-D-----NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF-LLVGNKSDL 135 (187)
T ss_dssp TEEEEEEEEECCCTTCCHHHH-H-----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCE-EEEEECGGG
T ss_pred CEEEEEEEEECCCCcccHHHH-H-----HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccc
Confidence 123678999999976533211 1 1122579999999998543211 1 1122222 3444 899999997
Q ss_pred CCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 253 ~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
............ +....+ ..+...+|+..|.| ++.+++.+.+.+
T Consensus 136 ~~~~~~~~~~~~------------~~~~~~--~~~~~~~Sa~~~~g-i~~l~~~l~~~i 179 (187)
T 2a9k_A 136 EDKRQVSVEEAK------------NRAEQW--NVNYVETSAKTRAN-VDKVFFDLMREI 179 (187)
T ss_dssp GGGCCSCHHHHH------------HHHHHT--TCEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred cccCccCHHHHH------------HHHHHc--CCeEEEeCCCCCCC-HHHHHHHHHHHH
Confidence 532111111110 000111 12456689999999 999999887765
No 97
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.02 E-value=7.8e-10 Score=98.77 Aligned_cols=151 Identities=11% Similarity=0.040 Sum_probs=77.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|.+||||||+++.|. +.+...+.. ...++.. .. .. .. ..
T Consensus 4 ki~~vG~~~~GKSsli~~l~------~~~~~~~~~-----------~~~~~~~-~~-~~-~~----------------~~ 47 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG------GVEDGPEAE-----------AAGHTYD-RS-IV-VD----------------GE 47 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC------CC---------------------CEEE-EE-EE-ET----------------TE
T ss_pred EEEEECCCCCCHHHHHHHHc------CccccCCCC-----------ccccceE-EE-EE-EC----------------CE
Confidence 59999999999999999997 655443322 1111111 00 00 00 12
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhc-----cCCeeEEEEeCccCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ-----SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~-----~~~i~~vVltK~D~~~ 254 (494)
.+.+.++||||...... +.. .....+|.+++|+|.+....... ....+.. ..|+ .+|.||+|...
T Consensus 48 ~~~~~i~D~~g~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~ 120 (166)
T 3q72_A 48 EASLMVYDIWEQDGGRW-LPG-----HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPI-ILVGNKSDLVR 120 (166)
T ss_dssp EEEEEEEECC---------------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCE-EEEEECTTCCS
T ss_pred EEEEEEEECCCCccchh-hhh-----hhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEecccccc
Confidence 46788999999754221 111 11235789999999875432111 1222221 2344 89999999864
Q ss_pred CccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.......... .... ....+...+|+..|.| ++.+++.+.+.+
T Consensus 121 ~~~~~~~~~~-------------~~~~-~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 162 (166)
T 3q72_A 121 SREVSVDEGR-------------ACAV-VFDCKFIETSAALHHN-VQALFEGVVRQI 162 (166)
T ss_dssp SCCSCHHHHH-------------HHHH-HTTCEEEECBGGGTBS-HHHHHHHHHHHH
T ss_pred ccccCHHHHH-------------HHHH-HhCCcEEEeccCCCCC-HHHHHHHHHHHH
Confidence 3221111110 0000 0113456689999999 999999887654
No 98
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.02 E-value=3.5e-10 Score=102.50 Aligned_cols=158 Identities=13% Similarity=0.065 Sum_probs=86.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+.. ..+.+ ..+..+...... ..
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~------~~~~~----~~~~~-----------~~~~~~~~~~~~-------------~~ 57 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFV------KDQFV----EFQES-----------TIGAAFFSQTLA-------------VN 57 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH------HCCCT----TTSCC-----------CSCCSEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHH------cCCCC----CcCCC-----------CceeEEEEEEEE-------------EC
Confidence 4569999999999999999998 22110 00000 011111110000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHHhcc---CCeeEEEEeCccCCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQS---VSVGAVIVTKMDGHA 254 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f~~~---~~i~~vVltK~D~~~ 254 (494)
...+.+.|+||||........ ......+|.+++|+|++..... ......+... -.+..+|+||+|...
T Consensus 58 ~~~~~~~i~Dt~G~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 131 (181)
T 2efe_B 58 DATVKFEIWDTAGQERYHSLA------PMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD 131 (181)
T ss_dssp TEEEEEEEEECCCSGGGGGGT------HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred CEEEEEEEEeCCCChhhhhhh------HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 124678999999975332111 1123468999999999754321 1122222221 123489999999854
Q ss_pred CccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCCC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~ 313 (494)
.......... +.... ...+...+|+..|.| ++.+++.+.+.+..
T Consensus 132 ~~~~~~~~~~------------~~~~~--~~~~~~~~Sa~~g~g-i~~l~~~l~~~~~~ 175 (181)
T 2efe_B 132 ARKVTAEDAQ------------TYAQE--NGLFFMETSAKTATN-VKEIFYEIARRLPR 175 (181)
T ss_dssp TCCSCHHHHH------------HHHHH--TTCEEEECCSSSCTT-HHHHHHHHHHTCC-
T ss_pred cccCCHHHHH------------HHHHH--cCCEEEEEECCCCCC-HHHHHHHHHHHHHh
Confidence 3211111110 00000 112446689999999 99999999888753
No 99
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.02 E-value=3.1e-09 Score=97.44 Aligned_cols=154 Identities=15% Similarity=0.092 Sum_probs=86.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+..-... . .+...... .
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~------~~~~~~~~~--t--------------~~~~~~~~-----------------~ 56 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFS------MNEVVHTSP--T--------------IGSNVEEI-----------------V 56 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH------TTSCEEEEC--C--------------SCSSCEEE-----------------E
T ss_pred ccEEEEECCCCCCHHHHHHHHh------cCCCCcCcC--C--------------CccceEEE-----------------E
Confidence 4579999999999999999998 444331111 0 01100000 0
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHHhc----cCCeeEEEEeCccCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ----SVSVGAVIVTKMDGH 253 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~~----~~~i~~vVltK~D~~ 253 (494)
..++.+.|+||||........ ......+|.+++|+|++...... .....+.. .-.+..+|+||+|..
T Consensus 57 ~~~~~~~i~Dt~G~~~~~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 130 (187)
T 1zj6_A 57 INNTRFLMWDIGGQESLRSSW------NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 130 (187)
T ss_dssp ETTEEEEEEECCC----CGGG------HHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTST
T ss_pred ECCEEEEEEECCCCHhHHHHH------HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCc
Confidence 125788999999975322111 11234689999999998653222 22222222 112348999999986
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccc-cCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEV-FDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~-f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
.... ...+....+ ...+.. ..+...+|+..|.| ++++++.+.+.+.
T Consensus 131 ~~~~-~~~i~~~~~-----------~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~~~ 177 (187)
T 1zj6_A 131 ECMT-VAEISQFLK-----------LTSIKDHQWHIQACCALTGEG-LCQGLEWMMSRLK 177 (187)
T ss_dssp TCCC-HHHHHHHHT-----------GGGCCSSCEEEEECBTTTTBT-HHHHHHHHHHHHC
T ss_pred CCCC-HHHHHHHhC-----------hhhhcCCCcEEEEccCCCCcC-HHHHHHHHHHHHH
Confidence 4311 111111111 000111 12456789999999 9999999988764
No 100
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.02 E-value=3.8e-10 Score=100.73 Aligned_cols=157 Identities=13% Similarity=0.077 Sum_probs=84.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
+..|+++|.+||||||+++.|.. .+.. +.+.+ ..+..+...... ..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~------~~~~----~~~~~-----------~~~~~~~~~~~~-------------~~ 51 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK------GQFH----EFQES-----------TIGAAFLTQTVC-------------LD 51 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH------SCCC----TTCCC-----------CSSEEEEEEEEE-------------ET
T ss_pred eEEEEEECCCCCCHHHHHHHHHc------CCCC----CCCCC-----------ccceEEEEEEEE-------------EC
Confidence 35699999999999999999982 2110 00000 011111100000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhcc---CCeeEEEEeCccCCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQS---VSVGAVIVTKMDGHA 254 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~~---~~i~~vVltK~D~~~ 254 (494)
...+.+.|+||||........ ......+|.+++|+|++....... ....+... -.+..+|.||+|...
T Consensus 52 ~~~~~~~~~D~~G~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1r2q_A 52 DTTVKFEIWDTAGQERYHSLA------PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN 125 (170)
T ss_dssp TEEEEEEEEEECCSGGGGGGH------HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CEEEEEEEEeCCCcHHhhhhh------HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 124678999999975432111 122346899999999986432211 12222221 122377789999753
Q ss_pred CccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
.......... .+.. ....+...+|+..|.| ++.|++.+.+.++
T Consensus 126 ~~~~~~~~~~-------------~~~~-~~~~~~~~~Sa~~g~g-i~~l~~~i~~~~~ 168 (170)
T 1r2q_A 126 KRAVDFQEAQ-------------SYAD-DNSLLFMETSAKTSMN-VNEIFMAIAKKLP 168 (170)
T ss_dssp GCCSCHHHHH-------------HHHH-HTTCEEEECCTTTCTT-HHHHHHHHHHTSC
T ss_pred ccccCHHHHH-------------HHHH-HcCCeEEEEeCCCCCC-HHHHHHHHHHHHh
Confidence 2111111110 0000 0112345689999999 9999999988774
No 101
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.02 E-value=9e-10 Score=98.46 Aligned_cols=154 Identities=16% Similarity=0.143 Sum_probs=85.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|.+||||||+++.|. +.+.. +.+.+. .+..+..... ...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~------~~~~~----~~~~~t-----------~~~~~~~~~~--------------~~~ 48 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFV------KGTFR----ESYIPT-----------VEDTYRQVIS--------------CDK 48 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHH------TCCCC----SSCCCC-----------SCEEEEEEEE--------------ETT
T ss_pred eEEEEECCCCCCHHHHHHHHH------cCCCC----CCCCCC-----------ccccEEEEEE--------------ECC
Confidence 469999999999999999998 43211 011110 0000000000 001
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc---HHHH---HHHHh---ccCCeeEEEEeCccC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQ---AQAFK---QSVSVGAVIVTKMDG 252 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~---~~~~---~~~f~---~~~~i~~vVltK~D~ 252 (494)
..+.+.|+||||.......... ....+|.+++|+|++.... .... +.... ...|+ .+|+||+|.
T Consensus 49 ~~~~~~~~Dt~G~~~~~~~~~~------~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pi-i~v~nK~Dl 121 (172)
T 2erx_A 49 SICTLQITDTTGSHQFPAMQRL------SISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPI-MLVGNKCDE 121 (172)
T ss_dssp EEEEEEEEECCSCSSCHHHHHH------HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCE-EEEEECGGG
T ss_pred EEEEEEEEECCCchhhHHHHHH------hcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCE-EEEEEcccc
Confidence 2467899999998654321111 1224799999999975322 1111 22222 12454 899999997
Q ss_pred CCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 253 ~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
........... +.... ....+...+|+..|.| ++.+++.+.+.+.
T Consensus 122 ~~~~~v~~~~~-------------~~~~~-~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~~ 166 (172)
T 2erx_A 122 SPSREVQSSEA-------------EALAR-TWKCAFMETSAKLNHN-VKELFQELLNLEK 166 (172)
T ss_dssp GGGCCSCHHHH-------------HHHHH-HHTCEEEECBTTTTBS-HHHHHHHHHHTCC
T ss_pred ccccccCHHHH-------------HHHHH-HhCCeEEEecCCCCcC-HHHHHHHHHHHHh
Confidence 53311110000 00000 0012446689999999 9999999998874
No 102
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.02 E-value=4.8e-10 Score=101.09 Aligned_cols=156 Identities=16% Similarity=0.055 Sum_probs=84.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+.. . .+.+ ..+..+...... ..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~------~~~~~---~-~~~~-----------t~~~~~~~~~~~-------------~~ 60 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFT------EKKFM---A-DCPH-----------TIGVEFGTRIIE-------------VS 60 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCCC---S-SCTT-----------SCCCCEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHH------cCCCC---C-CCCC-----------ccceEEEEEEEE-------------EC
Confidence 4579999999999999999998 32210 0 0100 011111110000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHHhc---cCCeeEEEEeCccCCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ---SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~~---~~~i~~vVltK~D~~~ 254 (494)
...+.+.|+||||......... .....+|.+++|+|++...... .....+.. .-.+..+|+||+|...
T Consensus 61 ~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 61 GQKIKLQIWDTAGQERFRAVTR------SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA 134 (179)
T ss_dssp TEEEEEEEEECTTGGGTCHHHH------HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred CeEEEEEEEECCCChHhhhhHH------HHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 1246789999999754332111 1223679999999998653211 11122221 2123489999999853
Q ss_pred CccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.......... +....+ ..+...+|+..|.| ++.+++.+.+.+
T Consensus 135 ~~~~~~~~~~------------~~~~~~--~~~~~~~Sa~~~~g-i~~l~~~l~~~i 176 (179)
T 1z0f_A 135 QRDVTYEEAK------------QFAEEN--GLLFLEASAKTGEN-VEDAFLEAAKKI 176 (179)
T ss_dssp GCCSCHHHHH------------HHHHHT--TCEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred ccccCHHHHH------------HHHHHc--CCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 2111111110 000111 12446689999999 999998887654
No 103
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=99.01 E-value=2.3e-08 Score=94.69 Aligned_cols=165 Identities=13% Similarity=0.196 Sum_probs=87.5
Q ss_pred eEEEEEcC-CCCcHHHHHHHHHHHHHhcCCceEEEEcccCc---------chhHHHHHhhhhcc----Cc-ceeccCCCC
Q 011076 102 SVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADTFR---------AGAFDQLKQNATKA----KI-PFYGSYTES 166 (494)
Q Consensus 102 ~vI~lvG~-~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r---------~~a~~qLk~~~~~~----~i-~~~~~~~~~ 166 (494)
++|+++|. +|+||||++.+||.+|+++|+||++++..... .+..+.+..+.... .. ++.. ....
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~ 80 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTF-AEPT 80 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSEEESCBCCTTSCBCHHHHHHHHTCSSCCCHHHHCSEEE-SSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcceecCCccCCCCcChHHHHHHHHHhCCCCChhhcccEEe-CCCC
Confidence 46888875 69999999999999999999999997632111 11222232222110 01 1111 0011
Q ss_pred C------------hHHHHHHHHHHHhccCCcEEEEeCCCCCchh--HHHHHHHHHHHHhcCCCEEEEEecCCCcc--cHH
Q 011076 167 D------------PVRIAVEGVETFKKENCDLIIVDTSGRHKQE--AALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAF 230 (494)
Q Consensus 167 d------------p~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~--~~l~~el~~i~~~~~~d~vllVvDa~~g~--~~~ 230 (494)
. ......+.+..+. +.||||||||||..... ..+ ....+.... .+.+++|+++..+. +..
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viID~p~~l~~p~~~~~--~~~~l~~~~-~~~vi~v~~~~~~~~~~~~ 156 (224)
T 1byi_A 81 SPHIISAQEGRPIESLVMSAGLRALE-QQADWVLVEGAGGWFTPLSDTF--TFADWVTQE-QLPVILVVGVKLGCINHAM 156 (224)
T ss_dssp CHHHHHHHHTCCCCHHHHHHHHHHHH-TTCSEEEEECSSSTTCEEETTE--EHHHHHHHH-TCCEEEEEECSTTHHHHHH
T ss_pred CHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCEEEEEcCCccccCCCcch--hHHHHHHHh-CCCEEEEecCCCCcHHHHH
Confidence 1 1222344455553 57999999998765311 000 000111111 23578888875421 122
Q ss_pred HHHHHHh-ccCCeeEEEEeCccCCCCc-cchhH-HHHhcCCCeE
Q 011076 231 DQAQAFK-QSVSVGAVIVTKMDGHAKG-GGALS-AVAATKSPVI 271 (494)
Q Consensus 231 ~~~~~f~-~~~~i~~vVltK~D~~~~~-g~~ls-~~~~~g~Pi~ 271 (494)
...+.+. ..+++.++|+|++|..... ..... +....+.|+.
T Consensus 157 ~~i~~l~~~~~~i~gvvlN~~~~~~~~~~~~~~~l~~~~~~~vl 200 (224)
T 1byi_A 157 LTAQVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLL 200 (224)
T ss_dssp HHHHHHHHTTCCEEEEEEECCSSCCTTHHHHHHHHHHHSSSCEE
T ss_pred HHHHHHHHCCCcEEEEEEeCCCCchhhHHHHHHHHHHHcCCCEE
Confidence 2333333 3467789999999975332 22222 2334676653
No 104
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.01 E-value=1.9e-09 Score=99.21 Aligned_cols=154 Identities=14% Similarity=0.073 Sum_probs=88.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+.. +.+.+ ..+..+... .
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~------~~~~~----~~~~~-----------t~~~~~~~~-----------------~ 63 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIA------SGQFN----EDMIP-----------TVGFNMRKI-----------------T 63 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCCC----CSCCC-----------CCSEEEEEE-----------------E
T ss_pred ccEEEEECCCCCCHHHHHHHHH------cCCCC----CccCC-----------CCceeEEEE-----------------E
Confidence 4679999999999999999998 32211 01111 011111110 1
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHh-----ccCCeeEEEEeCccC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK-----QSVSVGAVIVTKMDG 252 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~-----~~~~i~~vVltK~D~ 252 (494)
..++.+.|+||||...... + . ......+|.+++|+|++....... ....+. ...++ .+|+||+|.
T Consensus 64 ~~~~~~~l~Dt~G~~~~~~-~---~--~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~NK~Dl 136 (188)
T 1zd9_A 64 KGNVTIKLWDIGGQPRFRS-M---W--ERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPV-LVLGNKRDL 136 (188)
T ss_dssp ETTEEEEEEEECCSHHHHT-T---H--HHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCE-EEEEECTTS
T ss_pred eCCEEEEEEECCCCHhHHH-H---H--HHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCE-EEEEECCCC
Confidence 1357889999999743211 1 1 112346899999999976433222 222221 12344 899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccccccccc-cccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 253 ~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l-~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
..... ...+....+ ...+ ....+...+|+..|.| ++.|++.+.+.+.
T Consensus 137 ~~~~~-~~~~~~~~~-----------~~~~~~~~~~~~~~SA~~g~g-v~~l~~~l~~~~~ 184 (188)
T 1zd9_A 137 PGALD-EKELIEKMN-----------LSAIQDREICCYSISCKEKDN-IDITLQWLIQHSK 184 (188)
T ss_dssp TTCCC-HHHHHHHTT-----------GGGCCSSCEEEEECCTTTCTT-HHHHHHHHHHTCC
T ss_pred ccCCC-HHHHHHHhC-----------hhhhccCCeeEEEEECCCCCC-HHHHHHHHHHHHH
Confidence 64321 112221111 0001 1112446789999999 9999999988774
No 105
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.01 E-value=6.9e-10 Score=102.72 Aligned_cols=157 Identities=14% Similarity=0.104 Sum_probs=83.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+..... .+ ..+..+...... ..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~------~~~~~~~~----~~-----------t~~~~~~~~~~~-------------~~ 71 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFT------DDTFCEAC----KS-----------TVGVDFKIKTVE-------------LR 71 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHC------C------------C-----------CTTEEEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHh------cCCCCcCC----CC-----------ccceeEEEEEEE-------------EC
Confidence 3569999999999999999998 43321110 00 011111110000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhc---cCCeeEEEEeCccCCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ---SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~---~~~i~~vVltK~D~~~ 254 (494)
...+.+.|+||||......... .....+|.+++|+|++......+ ....+.. .-.+..+|+||+|...
T Consensus 72 ~~~~~l~l~Dt~G~~~~~~~~~------~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 72 GKKIRLQIWDTAGQERFNSITS------AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 145 (192)
T ss_dssp TEEEEEEEEEECCSGGGHHHHH------HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CeEEEEEEEeCCCcHHHHHHHH------HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 1246789999999754332111 11235799999999986432211 1122221 1123489999999853
Q ss_pred CccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
......... +.+.......+...+|++.|.| ++.+++.+.+.+
T Consensus 146 ~~~v~~~~~-------------~~~~~~~~~~~~~~~SA~~g~g-i~~l~~~l~~~i 188 (192)
T 2il1_A 146 DREITRQQG-------------EKFAQQITGMRFCEASAKDNFN-VDEIFLKLVDDI 188 (192)
T ss_dssp GCCSCHHHH-------------HHHHHTSTTCEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred ccccCHHHH-------------HHHHHhcCCCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 211111111 0110000123445689999999 999998886654
No 106
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.00 E-value=8.7e-10 Score=101.89 Aligned_cols=157 Identities=14% Similarity=0.129 Sum_probs=87.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||++++|. +.+.. +.+.+ ..+..+...... ..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~------~~~~~----~~~~~-----------~~~~~~~~~~~~-------------~~ 68 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFV------QDHFD----HNISP-----------TIGASFMTKTVP-------------CG 68 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH------HCCCC----TTCCC-----------CSSEEEEEEEEE-------------CS
T ss_pred ceEEEEECcCCCCHHHHHHHHh------cCCCC----CCcCC-----------CcceeEEEEEEE-------------eC
Confidence 4569999999999999999998 32210 00111 111111110000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhcc---CCeeEEEEeCccCCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQS---VSVGAVIVTKMDGHA 254 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~~---~~i~~vVltK~D~~~ 254 (494)
...+.+.|+||||........ ......+|.+++|+|++....... ....+... -.+..+|+||+|...
T Consensus 69 ~~~~~~~i~Dt~G~~~~~~~~------~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 69 NELHKFLIWDTAGQERFHSLA------PMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142 (192)
T ss_dssp SSEEEEEEEEECCSGGGGGGT------HHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CEEEEEEEEcCCCchhhHhhh------HHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 124678999999975432111 112346899999999976532211 22222221 123489999999853
Q ss_pred CccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
.......... +....+ ..+...+|+..|.| ++.|++.+.+.+.
T Consensus 143 ~~~v~~~~~~------------~~~~~~--~~~~~~~Sa~~~~g-i~~l~~~l~~~i~ 185 (192)
T 2fg5_A 143 IREVPLKDAK------------EYAESI--GAIVVETSAKNAIN-IEELFQGISRQIP 185 (192)
T ss_dssp GCCSCHHHHH------------HHHHTT--TCEEEECBTTTTBS-HHHHHHHHHHTCC
T ss_pred ccccCHHHHH------------HHHHHc--CCEEEEEeCCCCcC-HHHHHHHHHHHHH
Confidence 2111111111 000111 12446789999999 9999999998875
No 107
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.00 E-value=2.9e-10 Score=102.54 Aligned_cols=155 Identities=17% Similarity=0.175 Sum_probs=84.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|.+||||||+++.|. +.+.. ..+.+ ..++.++..... ...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~------~~~~~----~~~~~-----------~~~~~~~~~~~~-------------~~~ 60 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFM------YDSFD----NTYQA-----------TIGIDFLSKTMY-------------LED 60 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHH------HSCCC----SSCCC-----------CCSEEEEEEEEE-------------ETT
T ss_pred eEEEEECCCCCCHHHHHHHHH------cCCCC----CCCCC-----------ceeeEEEEEEEE-------------ECC
Confidence 569999999999999999998 22211 01111 011111110000 001
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc---HHHHHHHHh----ccCCeeEEEEeCccCCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFK----QSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~---~~~~~~~f~----~~~~i~~vVltK~D~~~ 254 (494)
..+.+.|+||||......... .....+|.+++|+|++.... .......+. ...+ ..+|+||+|...
T Consensus 61 ~~~~~~~~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 133 (179)
T 2y8e_A 61 RTVRLQLWDTAGQERFRSLIP------SYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSD 133 (179)
T ss_dssp EEEEEEEEEECCSGGGGGGSH------HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECGGGGG
T ss_pred eEEEEEEEECCCcHHHHHHHH------HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCcccc
Confidence 235789999999754322111 11236899999999975422 111222221 1233 489999999753
Q ss_pred CccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
.......... +..... ..+...+|+..|.| ++.+++.+.+.+.
T Consensus 134 ~~~~~~~~~~------------~~~~~~--~~~~~~~Sa~~~~~-i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 134 KRQVSTEEGE------------RKAKEL--NVMFIETSAKAGYN-VKQLFRRVAAALP 176 (179)
T ss_dssp GCCSCHHHHH------------HHHHHH--TCEEEEEBTTTTBS-HHHHHHHHHHTCC
T ss_pred cCcCCHHHHH------------HHHHHc--CCeEEEEeCCCCCC-HHHHHHHHHHHHh
Confidence 2111111110 000111 12446689999999 9999999988774
No 108
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.00 E-value=1e-09 Score=118.40 Aligned_cols=134 Identities=16% Similarity=0.203 Sum_probs=66.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+|+||||++++|+.+.........+.+.|.++....+.... ....++.+..... .+.
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~-E~~rGiTi~~~~~-------------~~~ 78 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEM-EKQRGISITTSVM-------------QFP 78 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC--------------------------------CCTTEE-------------EEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchh-cccCCcceeeeEE-------------EEE
Confidence 45799999999999999999984311111111223333333222221110 0111221110000 011
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH--HHHHHhc-cCCeeEEEEeCccCCCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD--QAQAFKQ-SVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~--~~~~f~~-~~~i~~vVltK~D~~~~ 255 (494)
..++.+.|+||||........ ......+|.+++|+|++.+..... ....... .+++ .+|+||+|....
T Consensus 79 ~~~~~i~liDTPG~~df~~~~------~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipi-ivviNK~Dl~~~ 149 (529)
T 2h5e_A 79 YHDCLVNLLDTPGHEDFSEDT------YRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPI-LTFMNKLDRDIR 149 (529)
T ss_dssp ETTEEEEEECCCCSTTCCHHH------HHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCE-EEEEECTTSCCS
T ss_pred ECCeEEEEEECCCChhHHHHH------HHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCE-EEEEcCcCCccc
Confidence 236789999999986543222 122346899999999987644322 2222222 3454 899999998654
No 109
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=99.00 E-value=3.3e-09 Score=108.11 Aligned_cols=40 Identities=30% Similarity=0.221 Sum_probs=36.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~ 140 (494)
..++++.|..|+||||++.+||.+|++.|++|++|++|+.
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~ 55 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPA 55 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSS
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4577778999999999999999999999999999999964
No 110
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.99 E-value=4.3e-09 Score=93.70 Aligned_cols=152 Identities=20% Similarity=0.122 Sum_probs=86.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|.+||||||+++.|.. .+. ..+.| + .+..... . ...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~------~~~-----~~~~~----------t-~~~~~~~-~----------------~~~ 42 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL------GEI-----VTTIP----------T-IGFNVET-V----------------EYK 42 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH------HCS-----SCCCC----------C-SSCCEEE-E----------------ECS
T ss_pred EEEEECCCCCCHHHHHHHHHc------CCc-----CcccC----------c-CceeEEE-E----------------EEC
Confidence 489999999999999999973 111 00111 0 0010000 0 013
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhcc----CCeeEEEEeCccCCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQS----VSVGAVIVTKMDGHAK 255 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~~----~~i~~vVltK~D~~~~ 255 (494)
++.+.|+||||...... +. ......+|.+++|+|++....... ....+... -.+..+|+||+|....
T Consensus 43 ~~~~~i~Dt~G~~~~~~-~~-----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 43 NISFTVWDVGGQDKIRP-LW-----RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp SCEEEEEECCCCGGGHH-HH-----HHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred CEEEEEEEcCCChhhHH-HH-----HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 57889999999864321 11 122457899999999986533222 22222211 1234899999998543
Q ss_pred ccchhHHHHhcCCCeEEecccccccccc-ccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~-~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
.. ...+....+ ...+. ...+...+|+..|.| ++++++.+.+.+.
T Consensus 117 ~~-~~~~~~~~~-----------~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i~ 161 (164)
T 1r8s_A 117 MN-AAEITDKLG-----------LHSLRHRNWYIQATCATSGDG-LYEGLDWLSNQLR 161 (164)
T ss_dssp CC-HHHHHHHTT-----------GGGCSSCCEEEEECBTTTTBT-HHHHHHHHHHHC-
T ss_pred CC-HHHHHHHhC-----------cccccCccEEEEEcccCCCcC-HHHHHHHHHHHHh
Confidence 21 112222111 01111 112345689999999 9999999988764
No 111
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.99 E-value=4.7e-10 Score=101.37 Aligned_cols=158 Identities=20% Similarity=0.220 Sum_probs=87.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
+..|+++|.+||||||+++.|. +.+.. ..+.+. .+ ..+.... ..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~------~~~~~----~~~~~~--------~~-~~~~~~~-----------------~~ 51 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIR------HSKVT----EQEAGG--------IT-QHIGAYQ-----------------VT 51 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHH------TTCSS----CSSCCS--------SS-TTCCCCE-----------------EE
T ss_pred CCEEEEECCCCCCHHHHHHHHh------CCccc----cCCCCc--------ee-EeeeEEE-----------------EE
Confidence 4579999999999999999998 43321 001000 00 0000000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc--cHHHHHHHHhc-cCCeeEEEEeCccCCCCcc
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGG 257 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~--~~~~~~~~f~~-~~~i~~vVltK~D~~~~~g 257 (494)
..+..+.|+||||........ ......+|.+++|+|++.+. ...+.+..+.. ..|+ .+|+||+|......
T Consensus 52 ~~~~~~~l~Dt~G~~~~~~~~------~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~-ilv~nK~Dl~~~~~ 124 (178)
T 2lkc_A 52 VNDKKITFLDTPGHEAFTTMR------ARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPI-IVAINKMDKPEANP 124 (178)
T ss_dssp ETTEEEEESCCCSSSSSSCSC------CSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCE-EEEEETTTSSCSCH
T ss_pred eCCceEEEEECCCCHHHHHHH------HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCE-EEEEECccCCcCCH
Confidence 124578899999975322100 01123578999999987542 23333444433 3454 99999999865321
Q ss_pred -chhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 258 -GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 258 -~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.........+ .....+....+...+|+..|.| ++.|++.+.+.+
T Consensus 125 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~Sa~~~~g-v~~l~~~l~~~~ 169 (178)
T 2lkc_A 125 DRVMQELMEYN---------LVPEEWGGDTIFCKLSAKTKEG-LDHLLEMILLVS 169 (178)
T ss_dssp HHHHHHHTTTT---------CCBTTTTSSEEEEECCSSSSHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcC---------cChhHcCCcccEEEEecCCCCC-HHHHHHHHHHhh
Confidence 1111111000 0001111113556799999999 999999987765
No 112
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.99 E-value=8.9e-10 Score=98.70 Aligned_cols=155 Identities=19% Similarity=0.103 Sum_probs=86.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
+..|+++|.+||||||+++.|. +.+.. .+.| + .+..+... .
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~------~~~~~-----~~~~----------t-~~~~~~~~-----------------~ 47 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQ------VGEVV-----TTIP----------T-IGFNVETV-----------------T 47 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH------HSSCC-----CCCC----------C-SSEEEEEE-----------------E
T ss_pred ccEEEEECCCCCCHHHHHHHHh------cCCCC-----CcCC----------c-CccceEEE-----------------E
Confidence 4579999999999999999997 22210 1111 0 01111000 0
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHHhc----cCCeeEEEEeCccCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ----SVSVGAVIVTKMDGH 253 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~~----~~~i~~vVltK~D~~ 253 (494)
..++.+.|+||||........ ......+|.+++|+|++...... .....+.. .-.+..+|+||+|..
T Consensus 48 ~~~~~~~~~Dt~G~~~~~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (171)
T 1upt_A 48 YKNLKFQVWDLGGLTSIRPYW------RCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 121 (171)
T ss_dssp ETTEEEEEEEECCCGGGGGGG------GGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred ECCEEEEEEECCCChhhhHHH------HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCc
Confidence 125678999999975432110 01123689999999998653322 22222221 112348999999986
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
.... ...+....+. +.... ...+...+|+..|.| ++.+++.+.+.+.
T Consensus 122 ~~~~-~~~~~~~~~~--------~~~~~--~~~~~~~~Sa~~~~g-i~~l~~~l~~~i~ 168 (171)
T 1upt_A 122 QAMT-SSEMANSLGL--------PALKD--RKWQIFKTSATKGTG-LDEAMEWLVETLK 168 (171)
T ss_dssp TCCC-HHHHHHHHTG--------GGCTT--SCEEEEECCTTTCTT-HHHHHHHHHHHHH
T ss_pred CCCC-HHHHHHHhCc--------hhccC--CceEEEECcCCCCcC-HHHHHHHHHHHHh
Confidence 4421 1112111110 00011 111456789999999 9999999887653
No 113
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.99 E-value=2.9e-10 Score=102.79 Aligned_cols=157 Identities=14% Similarity=0.156 Sum_probs=80.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|++||||||+++.|. +.+.. +.+.+ ..+..++......+ .
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~------~~~~~----~~~~~-----------~~~~~~~~~~~~~~------------~ 54 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYV------NDKYS----QQYKA-----------TIGADFLTKEVTVD------------G 54 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------HSCCC----TTC--------------CCCSCEEEEECCS------------S
T ss_pred eEEEEEECCCCCCHHHHHHHHH------hCcCC----cccCC-----------ccceEEEEEEEEEc------------C
Confidence 4579999999999999999998 22210 01111 00111110000000 0
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHHh--------ccCCeeEEEEeC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFK--------QSVSVGAVIVTK 249 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~--------~~~~i~~vVltK 249 (494)
...+.+.|+||||...... + .......+|.+++|+|++...... .....+. ...|+ .+|+||
T Consensus 55 ~~~~~~~l~Dt~G~~~~~~-----~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK 127 (182)
T 1ky3_A 55 DKVATMQVWDTAGQERFQS-----L-GVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPF-VILGNK 127 (182)
T ss_dssp SCCEEEEEECCC----------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCE-EEEEEC
T ss_pred CcEEEEEEEECCCChHhhh-----h-hHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcE-EEEEEC
Confidence 1245789999999542211 1 011133689999999997643211 1111221 22344 899999
Q ss_pred ccCCCCccch-hHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 250 MDGHAKGGGA-LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 250 ~D~~~~~g~~-ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
+|........ .... +.+.......+...+|+..|.| ++.+++.+.+.+
T Consensus 128 ~Dl~~~~~~v~~~~~-------------~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 176 (182)
T 1ky3_A 128 IDAEESKKIVSEKSA-------------QELAKSLGDIPLFLTSAKNAIN-VDTAFEEIARSA 176 (182)
T ss_dssp TTSCGGGCCSCHHHH-------------HHHHHHTTSCCEEEEBTTTTBS-HHHHHHHHHHHH
T ss_pred CccccccccCCHHHH-------------HHHHHhcCCCeEEEEecCCCCC-HHHHHHHHHHHH
Confidence 9984321110 1111 1111101223456789999999 999999887654
No 114
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.99 E-value=5.1e-10 Score=104.45 Aligned_cols=154 Identities=14% Similarity=0.073 Sum_probs=84.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+.. ..+.+ ..+..+...... ..
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~------~~~~~----~~~~~-----------~~~~~~~~~~~~-------------~~ 65 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFV------EDKFN----PSFIT-----------TIGIDFKIKTVD-------------IN 65 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH------HCCCC----CSSSC-----------CCSCCEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHH------hCCCC----cccCC-----------cccceEEEEEEE-------------EC
Confidence 4579999999999999999998 33221 01111 011111100000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHHhc----cCCeeEEEEeCccCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDGH 253 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f~~----~~~i~~vVltK~D~~ 253 (494)
...+.+.|+||||........ ......+|.+++|+|++..... ......+.. ..+ ..+|+||+|..
T Consensus 66 ~~~~~~~l~Dt~G~~~~~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 138 (213)
T 3cph_A 66 GKKVKLQLWDTAGQERFRTIT------TAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDME 138 (213)
T ss_dssp TEEEEEEEECCTTGGGGTCCC------HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSE-EEEEEECTTCS
T ss_pred CEEEEEEEEeCCCcHHHHHHH------HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCc
Confidence 013678999999965332110 1223468999999999754321 112222222 233 48999999984
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.+.-....... ....+. .+...+|+..|.| ++.+++.+.+.+
T Consensus 139 ~~~~~~~~~~~-------------~~~~~~--~~~~~~Sa~~~~g-i~~l~~~l~~~~ 180 (213)
T 3cph_A 139 TRVVTADQGEA-------------LAKELG--IPFIESSAKNDDN-VNEIFFTLAKLI 180 (213)
T ss_dssp SCCSCHHHHHH-------------HHHHHT--CCEEECBTTTTBS-SHHHHHHHHHHH
T ss_pred ccccCHHHHHH-------------HHHHcC--CEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 33211111100 000111 2456689999999 999998887654
No 115
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=98.99 E-value=3.3e-09 Score=109.00 Aligned_cols=43 Identities=30% Similarity=0.308 Sum_probs=38.1
Q ss_pred eEEEEE-cCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchh
Q 011076 102 SVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA 144 (494)
Q Consensus 102 ~vI~lv-G~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a 144 (494)
++|+|+ +..||||||++.+||..|++.|+||++||+|++.+..
T Consensus 2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~~ 45 (361)
T 3pg5_A 2 RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNAT 45 (361)
T ss_dssp EEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTTH
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCChh
Confidence 467777 6679999999999999999999999999999987654
No 116
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.99 E-value=1.7e-10 Score=104.20 Aligned_cols=152 Identities=16% Similarity=0.095 Sum_probs=84.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+... .. .+ ..+..+...... ..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~------~~~~~~-~~---~~-----------~~~~~~~~~~~~-------------~~ 54 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFA------DNTFSG-SY---IT-----------TIGVDFKIRTVE-------------IN 54 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHC------SCC----CC---TT-----------TBSEEEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHh------cCCCCC-cc---CC-----------CceeEEEEEEEE-------------EC
Confidence 3569999999999999999998 543321 11 11 011111100000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhccC--CeeEEEEeCccCCCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQSV--SVGAVIVTKMDGHAK 255 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~~~--~i~~vVltK~D~~~~ 255 (494)
...+.+.|+||||........ ......+|.+++|+|++....... ....+.... .+..+|+||+|....
T Consensus 55 ~~~~~~~i~Dt~G~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 128 (181)
T 3tw8_B 55 GEKVKLQIWDTAGQERFRTIT------STYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPER 128 (181)
T ss_dssp TEEEEEEEEEETTGGGCSSCC------GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGG
T ss_pred CEEEEEEEEcCCCchhhhhhH------HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchh
Confidence 013678999999964321100 111346799999999986533222 222232221 234899999997543
Q ss_pred ccch----hHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 256 GGGA----LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 256 ~g~~----ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.... ....... ..+...+|+..|.| ++.+++.+.+.+
T Consensus 129 ~~~~~~~~~~~~~~~------------------~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 169 (181)
T 3tw8_B 129 KVVETEDAYKFAGQM------------------GIQLFETSAKENVN-VEEMFNCITELV 169 (181)
T ss_dssp CCSCHHHHHHHHHHH------------------TCCEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHc------------------CCeEEEEECCCCCC-HHHHHHHHHHHH
Confidence 2111 1111111 12445689999999 999999988766
No 117
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.99 E-value=1e-09 Score=101.68 Aligned_cols=159 Identities=15% Similarity=0.148 Sum_probs=86.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|++||||||+++.|. +.+.. .+.+ + .+..... ..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~------~~~~~-----~~~~----------t-~~~~~~~-----------------~~ 63 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLK------NDRLA-----TLQP----------T-WHPTSEE-----------------LA 63 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHH------HSCCC-----CCCC----------C-CSCEEEE-----------------EE
T ss_pred ccEEEEECCCCCCHHHHHHHHh------cCCCC-----cccc----------C-CCCCeEE-----------------EE
Confidence 3469999999999999999998 33321 1111 0 0000000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHh-----ccCCeeEEEEeCccC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK-----QSVSVGAVIVTKMDG 252 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~-----~~~~i~~vVltK~D~ 252 (494)
..++.+.++||||...... +. ......+|.+++|+|++......+ ....+. ...|+ .+|.||+|.
T Consensus 64 ~~~~~~~i~Dt~G~~~~~~-~~-----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~NK~Dl 136 (190)
T 1m2o_B 64 IGNIKFTTFDLGGHIQARR-LW-----KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPF-VILGNKIDA 136 (190)
T ss_dssp ETTEEEEEEECCCSGGGTT-SG-----GGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCE-EEEEECTTS
T ss_pred ECCEEEEEEECCCCHHHHH-HH-----HHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCE-EEEEECCCC
Confidence 1246789999999854221 10 011236899999999987643222 222221 12344 999999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 253 ~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
.... ..-.+....+.+. ..+.|. +.. ....+...+|++.|.| ++++++.+.+.
T Consensus 137 ~~~~-~~~~~~~~~~~~~-~~~~~~-~~~-~~~~~~~~~Sa~~g~g-i~~l~~~l~~~ 189 (190)
T 1m2o_B 137 PNAV-SEAELRSALGLLN-TTGSQR-IEG-QRPVEVFMCSVVMRNG-YLEAFQWLSQY 189 (190)
T ss_dssp TTCC-CHHHHHHHTTCSS-CCC----CCS-SCCEEEEECBTTTTBS-HHHHHHHHHTT
T ss_pred cCCC-CHHHHHHHhCCcc-cccccc-ccc-cceEEEEEeECCcCCC-HHHHHHHHHhh
Confidence 6421 1112222222221 001111 100 1112446689999999 99999988654
No 118
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=98.98 E-value=4.1e-09 Score=108.71 Aligned_cols=122 Identities=21% Similarity=0.202 Sum_probs=73.6
Q ss_pred CCCCCCeEEEEEc-CCCCcHHHHHHHHHHHHHhcCCceEEEEcccCc-----------chhHHHH--------------H
Q 011076 96 PKKGKPSVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR-----------AGAFDQL--------------K 149 (494)
Q Consensus 96 ~~~~~~~vI~lvG-~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r-----------~~a~~qL--------------k 149 (494)
....++++|+|+| ..|+||||++.+||..|+++|++|++|++|.+. .+..+.+ .
T Consensus 138 ~~~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D~~~~l~~~lg~~~~~~l~d~l~~~~~~~~~~~~~l~ 217 (373)
T 3fkq_A 138 GENDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQCGTTDVFFQAEGNATMSDVIYSLKSRKANLLLKLE 217 (373)
T ss_dssp CCTTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECCTTCCHHHHCCCSCSCCHHHHHHHHHSCCSCHHHHHH
T ss_pred ccCCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHcCCCCCCCHHHHHhhhhcccccccccHH
Confidence 3445678999985 779999999999999999999999999999321 1111111 1
Q ss_pred hhhh--ccCcceeccCCC-CCh----HHHHHHHHHHHh-ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEe
Q 011076 150 QNAT--KAKIPFYGSYTE-SDP----VRIAVEGVETFK-KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVM 221 (494)
Q Consensus 150 ~~~~--~~~i~~~~~~~~-~dp----~~i~~~~l~~~~-~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVv 221 (494)
.... ..++.+...... .++ .......+..+. ...||+||||||+..... . ......+|.+++|+
T Consensus 218 ~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~yD~VIID~p~~~~~~--~------~~~l~~aD~vivv~ 289 (373)
T 3fkq_A 218 SCIKQSQEGVSYFSSTKVALDILEISYADIDTLIGNIQGMDNYDEIIVDLPFSLEIE--K------LKLLSKAWRIIVVN 289 (373)
T ss_dssp HTCEECTTSCEECCCCSSGGGGGGCCHHHHHHHHHHHHHTSCCSEEEEECCCCCCHH--H------HHHHTTCSEEEEEE
T ss_pred HHhhcCCCCEEEecCCCChHhHHhCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCHH--H------HHHHHHCCEEEEEe
Confidence 1111 134433332211 111 111223333333 258999999998655322 1 12234679999999
Q ss_pred cCCC
Q 011076 222 DSSI 225 (494)
Q Consensus 222 Da~~ 225 (494)
.+..
T Consensus 290 ~~~~ 293 (373)
T 3fkq_A 290 DGSQ 293 (373)
T ss_dssp CCCH
T ss_pred cCCc
Confidence 8863
No 119
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.98 E-value=1.5e-09 Score=99.61 Aligned_cols=106 Identities=15% Similarity=0.061 Sum_probs=60.4
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhcc-CCeeEEEEeCccCCCCccch
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQS-VSVGAVIVTKMDGHAKGGGA 259 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~~-~~i~~vVltK~D~~~~~g~~ 259 (494)
+.+.|+||||........ ......+|.+++|+|++.+....+ ....+... -.+..+|+||+|...+. ..
T Consensus 93 ~~~~i~Dt~G~~~~~~~~------~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~-~~ 165 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIV------PLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQ-VD 165 (208)
T ss_dssp EEEEEEECTTGGGCTTTH------HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CC-SC
T ss_pred eEEEEEECCCcHHHHHHH------HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCccccc-CC
Confidence 688999999964332111 122346899999999986532221 22223221 13448999999932221 11
Q ss_pred hHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 260 LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 260 ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
..... +..... ..+...+|+..|.| ++.+++.+.+.+
T Consensus 166 ~~~~~------------~~~~~~--~~~~~~~Sa~~~~~-i~~l~~~l~~~~ 202 (208)
T 3clv_A 166 ILEVQ------------KYAQDN--NLLFIQTSAKTGTN-IKNIFYMLAEEI 202 (208)
T ss_dssp HHHHH------------HHHHHT--TCEEEEECTTTCTT-HHHHHHHHHHHH
T ss_pred HHHHH------------HHHHHc--CCcEEEEecCCCCC-HHHHHHHHHHHH
Confidence 11111 000111 12456689999999 999998886654
No 120
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.98 E-value=1.3e-09 Score=97.30 Aligned_cols=156 Identities=15% Similarity=0.123 Sum_probs=85.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|.+||||||+++.|. +.+.. ..+.+ ..+..+...... ...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~------~~~~~----~~~~~-----------~~~~~~~~~~~~-------------~~~ 52 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFV------EDSFD----PNINP-----------TIGASFMTKTVQ-------------YQN 52 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHH------HSCCC----TTCCC-----------CCSEEEEEEEEE-------------ETT
T ss_pred eEEEEECcCCCCHHHHHHHHH------cCCCC----CCCCC-----------ceeEEEEEEEEE-------------ECC
Confidence 469999999999999999998 32210 00101 011111100000 001
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHHhc---cCCeeEEEEeCccCCCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ---SVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~~---~~~i~~vVltK~D~~~~ 255 (494)
..+.+.|+||||........ ......+|.+++|+|++...... .....+.. ...+..+|.||+|....
T Consensus 53 ~~~~~~~~Dt~G~~~~~~~~------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1z0j_A 53 ELHKFLIWDTAGLERFRALA------PMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGT------HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGG
T ss_pred eEEEEEEEcCCCchhhhccc------HhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccc
Confidence 24678999999985432111 11234679999999998643221 12222222 12234788899998543
Q ss_pred ccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
......... +....+ ..+...+|+..|.| ++.|++.+.+.+.
T Consensus 127 ~~v~~~~~~------------~~~~~~--~~~~~~~Sa~~~~~-i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 127 REVMERDAK------------DYADSI--HAIFVETSAKNAIN-INELFIEISRRIP 168 (170)
T ss_dssp CCSCHHHHH------------HHHHHT--TCEEEECBTTTTBS-HHHHHHHHHHHCC
T ss_pred cccCHHHHH------------HHHHHc--CCEEEEEeCCCCcC-HHHHHHHHHHHHh
Confidence 111111110 000111 12446689999999 9999999988764
No 121
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=98.98 E-value=4e-09 Score=108.29 Aligned_cols=42 Identities=24% Similarity=0.220 Sum_probs=36.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH--hcCCceEEEEcccCcchh
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQ--KKGWKPALVCADTFRAGA 144 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~--~~g~kVaiVs~D~~r~~a 144 (494)
.++++.|.+|+||||++.+||..|+ +.|+||++|++|+ ++..
T Consensus 19 ~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~-~~~l 62 (354)
T 2woj_A 19 KWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDP-AHNL 62 (354)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS-SCCH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC-CCCH
Confidence 4566669999999999999999999 8899999999999 4443
No 122
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.98 E-value=3.8e-10 Score=102.65 Aligned_cols=153 Identities=19% Similarity=0.106 Sum_probs=84.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
+..|+++|++||||||+++.|. +.+..-... . .+...... .
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~------~~~~~~~~~-----------t-----~~~~~~~~-----------------~ 58 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQ------IGEVVTTKP-----------T-----IGFNVETL-----------------S 58 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC------CSEEEEECS-----------S-----TTCCEEEE-----------------E
T ss_pred ccEEEEECCCCCCHHHHHHHHh------cCCcCccCC-----------c-----CccceEEE-----------------E
Confidence 5679999999999999999998 555421111 0 01100000 0
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhc----cCCeeEEEEeCccCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDGH 253 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~----~~~i~~vVltK~D~~ 253 (494)
..++.+.++||||........ ......+|.+++|+|++....... ....+.. .-.+..+|+||+|..
T Consensus 59 ~~~~~~~i~Dt~G~~~~~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 132 (183)
T 1moz_A 59 YKNLKLNVWDLGGQTSIRPYW------RCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQP 132 (183)
T ss_dssp ETTEEEEEEEEC----CCTTG------GGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTST
T ss_pred ECCEEEEEEECCCCHhHHHHH------HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCC
Confidence 124678999999975322110 011235789999999876533222 2222221 112348999999985
Q ss_pred CCccchhHHHHhcCCCeEEecccccccccc-ccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~-~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
... ....+....+. ..+. ...+...+|+..|.| ++++++.+.+.+
T Consensus 133 ~~~-~~~~i~~~~~~-----------~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 178 (183)
T 1moz_A 133 GAL-SASEVSKELNL-----------VELKDRSWSIVASSAIKGEG-ITEGLDWLIDVI 178 (183)
T ss_dssp TCC-CHHHHHHHTTT-----------TTCCSSCEEEEEEBGGGTBT-HHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHhCc-----------ccccCCceEEEEccCCCCcC-HHHHHHHHHHHH
Confidence 431 11112211111 0111 112456789999999 999999987765
No 123
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.97 E-value=3.4e-10 Score=101.02 Aligned_cols=155 Identities=12% Similarity=0.102 Sum_probs=83.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.... +.+.+ ..+..+...... ..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~------~~~~~----~~~~~-----------t~~~~~~~~~~~-------------~~ 50 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYC------KGIFT----KDYKK-----------TIGVDFLERQIQ-------------VN 50 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HCCCC----CCSSC-----------CCSSSEEEEEEE-------------ET
T ss_pred eEEEEEECcCCCCHHHHHHHHH------cCCCC----CCCCC-----------ceEEEEEEEEEE-------------EC
Confidence 3568999999999999999998 32211 01111 011111100000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHHh---ccCCeeEEEEeCccCCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFK---QSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f~---~~~~i~~vVltK~D~~~ 254 (494)
...+.+.|+||||........ ......+|.+++|+|++..... ......+. ...++ .+|+||+|...
T Consensus 51 ~~~~~~~l~Dt~G~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~pi-ilv~nK~Dl~~ 123 (168)
T 1z2a_A 51 DEDVRLMLWDTAGQEEFDAIT------KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPT-ALVQNKIDLLD 123 (168)
T ss_dssp TEEEEEEEECCTTGGGTTCCC------HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCE-EEEEECGGGGG
T ss_pred CEEEEEEEEcCCCcHhHHHHH------HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEECcccCc
Confidence 124678999999964322100 1122368999999999764321 11122221 23454 89999999754
Q ss_pred CccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.......... +....+ ..+...+|+..|.| ++.+++.+.+.+
T Consensus 124 ~~~~~~~~~~------------~~~~~~--~~~~~~~Sa~~~~~-i~~l~~~l~~~~ 165 (168)
T 1z2a_A 124 DSCIKNEEAE------------GLAKRL--KLRFYRTSVKEDLN-VSEVFKYLAEKH 165 (168)
T ss_dssp GCSSCHHHHH------------HHHHHH--TCEEEECBTTTTBS-SHHHHHHHHHHH
T ss_pred ccccCHHHHH------------HHHHHc--CCeEEEEecCCCCC-HHHHHHHHHHHH
Confidence 2111011110 000011 12446689999999 999999887654
No 124
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.97 E-value=5.5e-09 Score=96.79 Aligned_cols=155 Identities=19% Similarity=0.099 Sum_probs=85.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
+...|+++|.+||||||+++.|. +.+.. .. .| + .+..... .
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~------~~~~~--~~---~~----------t-~~~~~~~-~---------------- 68 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLK------LGEIV--TT---IP----------T-IGFNVET-V---------------- 68 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHC------SSCCE--EE---EE----------E-TTEEEEE-E----------------
T ss_pred CccEEEEECCCCCCHHHHHHHHH------hCCcc--cc---CC----------c-CceeEEE-E----------------
Confidence 35679999999999999999997 43321 11 11 0 0110000 0
Q ss_pred hccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhc----cCCeeEEEEeCccC
Q 011076 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDG 252 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~----~~~i~~vVltK~D~ 252 (494)
...++.+.|+||||........ ......+|.+++|+|++....... ....+.. .-.+..+|+||+|.
T Consensus 69 ~~~~~~~~i~Dt~G~~~~~~~~------~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl 142 (192)
T 2b6h_A 69 EYKNICFTVWDVGGQDKIRPLW------RHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDM 142 (192)
T ss_dssp EETTEEEEEEECC-----CTTH------HHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred EECCEEEEEEECCCCHhHHHHH------HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCC
Confidence 0125788999999974322111 111236899999999986543222 2222221 11234899999998
Q ss_pred CCCccchhHHHHhcCCCeEEecccccccccc-ccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 253 ~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~-~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
.... ....+....+. .... ...+...+|+..|.| ++.+++.+.+.+.
T Consensus 143 ~~~~-~~~~i~~~~~~-----------~~~~~~~~~~~~~SA~~g~g-i~~l~~~l~~~i~ 190 (192)
T 2b6h_A 143 PNAM-PVSELTDKLGL-----------QHLRSRTWYVQATCATQGTG-LYDGLDWLSHELS 190 (192)
T ss_dssp TTCC-CHHHHHHHTTG-----------GGCSSCCEEEEECBTTTTBT-HHHHHHHHHHHTT
T ss_pred CCCC-CHHHHHHHhCc-----------ccccCCceEEEECcCCCcCC-HHHHHHHHHHHHh
Confidence 5431 11122221111 0011 112346689999999 9999999987763
No 125
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.97 E-value=5.6e-10 Score=102.96 Aligned_cols=155 Identities=13% Similarity=0.029 Sum_probs=82.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+...... + . .+..+...... ..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~------~~~~~~~~~----~-------t----~~~~~~~~~~~-------------~~ 66 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFT------DKRFQPVHD----L-------T----IGVEFGARMVN-------------ID 66 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHH------HSCCCC--------------------CCSSEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHh------cCCCCCCCC----C-------c----ccceeEEEEEE-------------EC
Confidence 4569999999999999999998 322211100 0 0 01111100000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHHhc----cCCeeEEEEeCccCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDGH 253 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f~~----~~~i~~vVltK~D~~ 253 (494)
...+.+.|+||||........ ......+|.+++|+|++..... ......+.. ..+ ..+|+||+|..
T Consensus 67 ~~~~~~~i~Dt~G~~~~~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~ 139 (191)
T 2a5j_A 67 GKQIKLQIWDTAGQESFRSIT------RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMV-IMLIGNKSDLE 139 (191)
T ss_dssp TEEEEEEEECCTTGGGTSCCC------HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCG
T ss_pred CEEEEEEEEECCCchhhhhhH------HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccC
Confidence 123678999999964322100 1123468999999999764321 112222222 233 48999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
........... +..... ..+...+|+..|.| ++.+++.+.+.+
T Consensus 140 ~~~~v~~~~~~------------~~~~~~--~~~~~~~Sa~~~~g-i~~l~~~l~~~i 182 (191)
T 2a5j_A 140 SRRDVKREEGE------------AFAREH--GLIFMETSAKTACN-VEEAFINTAKEI 182 (191)
T ss_dssp GGCCSCHHHHH------------HHHHHH--TCEEEEECTTTCTT-HHHHHHHHHHHH
T ss_pred CccccCHHHHH------------HHHHHc--CCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 32111111110 000011 12445689999999 999998886654
No 126
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.96 E-value=7.9e-10 Score=101.64 Aligned_cols=152 Identities=14% Similarity=0.053 Sum_probs=83.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+.. ..+.+ ..+..+...... ..
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~------~~~~~----~~~~~-----------~~~~~~~~~~~~-------------~~ 61 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFA------DDTYT----ESYIS-----------TIGVDFKIRTIE-------------LD 61 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCCC----SCCCC-----------CSSEEEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHH------cCCCC----CCCCC-----------cccceEEEEEEE-------------EC
Confidence 4569999999999999999998 22111 00000 011111100000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHHhc---cCCeeEEEEeCccCCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f~~---~~~i~~vVltK~D~~~ 254 (494)
...+.+.|+||||........ ......+|.+++|+|++..... ......+.. .-.+..+|+||+|...
T Consensus 62 ~~~~~~~i~Dt~G~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 135 (196)
T 3tkl_A 62 GKTIKLQIWDTAGQERFRTIT------SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 135 (196)
T ss_dssp TEEEEEEEEEECCSGGGCTTH------HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred CEEEEEEEEECCCcHhhhhhH------HHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 123678999999965432111 1223468999999999864321 112222222 1123489999999864
Q ss_pred Cccchh----HHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 255 KGGGAL----SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 255 ~~g~~l----s~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
...... ......+ .+...+|+..|.| ++.+++.+.+.+
T Consensus 136 ~~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~g~g-v~~l~~~l~~~i 177 (196)
T 3tkl_A 136 KKVVDYTTAKEFADSLG------------------IPFLETSAKNATN-VEQSFMTMAAEI 177 (196)
T ss_dssp TCCSCHHHHHHHHHHTT------------------CCEEEECTTTCTT-HHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcC------------------CcEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 421111 1111111 2445689999999 998888876654
No 127
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.96 E-value=1.4e-09 Score=99.03 Aligned_cols=150 Identities=14% Similarity=0.090 Sum_probs=81.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+. .+.+.+ ++...........
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~------~~~~----~~~~~~---------t~~~~~~~~~~~~---------------- 48 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLI------QNHF----VDEYDP---------TIEDSYRKQVVID---------------- 48 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------HSSC----CCCCCT---------TCCEEEEEEEEET----------------
T ss_pred EEEEEEECCCCCCHHHHHHHHH------hCCC----CCCCCC---------CchheEEEEEEEC----------------
Confidence 3469999999999999999998 3221 111111 0000000000000
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHHhc-----cCCeeEEEEeCccC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ-----SVSVGAVIVTKMDG 252 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~~-----~~~i~~vVltK~D~ 252 (494)
...+.+.|+||||........ . .....+|.+++|+|++...... .....+.. ..|+ .+|+||+|.
T Consensus 49 ~~~~~~~i~Dt~G~~~~~~~~-~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-i~v~nK~Dl 121 (189)
T 4dsu_A 49 GETCLLDILDTAGQEEYSAMR-D-----QYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM-VLVGNKCDL 121 (189)
T ss_dssp TEEEEEEEEECCCC---CTTH-H-----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCE-EEEEECTTS
T ss_pred CcEEEEEEEECCCcHHHHHHH-H-----HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcE-EEEEECccC
Confidence 123557789999965332111 1 1122479999999997543211 12222222 2344 899999998
Q ss_pred CCCccch---hHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 253 HAKGGGA---LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 253 ~~~~g~~---ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
..+.... .......+ .+...+|+..|.| ++.+++.+.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~g~g-i~~l~~~l~~~~ 164 (189)
T 4dsu_A 122 PSRTVDTKQAQDLARSYG------------------IPFIETSAKTRQG-VDDAFYTLVREI 164 (189)
T ss_dssp SSCSSCHHHHHHHHHHHT------------------CCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcC------------------CeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 6442111 11111111 2445689999999 999999887765
No 128
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.96 E-value=2.2e-09 Score=98.34 Aligned_cols=106 Identities=16% Similarity=0.099 Sum_probs=61.6
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc-----cHHHHHHHH-h------ccCCeeEEEEeCc
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ-----AAFDQAQAF-K------QSVSVGAVIVTKM 250 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~-----~~~~~~~~f-~------~~~~i~~vVltK~ 250 (494)
.+.+.|+||||........ -.....+|.+++|+|++.+. .....+..+ . ...|+ .+|.||+
T Consensus 73 ~~~~~i~Dt~G~~~~~~~~------~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~pi-ilv~NK~ 145 (198)
T 3t1o_A 73 KTRFHLYTVPGQVFYNASR------KLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPI-VIQVNKR 145 (198)
T ss_dssp EEEEEEEECCSCCSCSHHH------HHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCE-EEEEECT
T ss_pred ceEEEEEeCCChHHHHHHH------HHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCE-EEEEEch
Confidence 4578999999975433211 12234689999999998431 112222221 1 12344 8999999
Q ss_pred cCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 251 D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
|..... ...... +.... ..+.+...+|+..|.| ++.+++.+.+.+
T Consensus 146 Dl~~~~--~~~~~~------------~~~~~-~~~~~~~~~Sa~~~~g-v~~l~~~l~~~i 190 (198)
T 3t1o_A 146 DLPDAL--PVEMVR------------AVVDP-EGKFPVLEAVATEGKG-VFETLKEVSRLV 190 (198)
T ss_dssp TSTTCC--CHHHHH------------HHHCT-TCCSCEEECBGGGTBT-HHHHHHHHHHHH
T ss_pred hccccc--CHHHHH------------HHHHh-cCCceEEEEecCCCcC-HHHHHHHHHHHH
Confidence 985431 111110 00011 1122456789999999 999999887654
No 129
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=98.96 E-value=7.9e-09 Score=104.89 Aligned_cols=40 Identities=30% Similarity=0.228 Sum_probs=36.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~ 140 (494)
..++++.|.+|+||||++.+||..|++.|+||++|++|+.
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 3456677999999999999999999999999999999986
No 130
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.96 E-value=6.3e-10 Score=116.89 Aligned_cols=161 Identities=19% Similarity=0.177 Sum_probs=90.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
....|+|+|.+|+||||+++.|. +.+.+.++. ...++..-........
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~------~~~~~~~~~-----------~~gtT~d~~~~~~~~~--------------- 80 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALV------GQNVSIVSD-----------YAGTTTDPVYKSMELH--------------- 80 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSC------C------------------------CCCCEEEEEET---------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHH------cCCCCccCC-----------CCCeeeeeEEEEEEEC---------------
Confidence 35679999999999999999998 666554443 1222222111000000
Q ss_pred hccCCcEEEEeCCCCCchhHHHHHHHH-HHHHhcCCCEEEEEecCCCcccHHHHHHHHhcc-CCeeEEEEeCccCCCCcc
Q 011076 180 KKENCDLIIVDTSGRHKQEAALFEEMR-QVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQS-VSVGAVIVTKMDGHAKGG 257 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~~~l~~el~-~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~-~~i~~vVltK~D~~~~~g 257 (494)
....+.|+||||.......-..+.. .......+|.+++|+|++...........+.+. .++ .+|+||+|......
T Consensus 81 --~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~~~~~~l~~l~~~~~pi-IvV~NK~Dl~~~~~ 157 (423)
T 3qq5_A 81 --PIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNLFKEMEIPF-VVVVNKIDVLGEKA 157 (423)
T ss_dssp --TTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCHHHHHHHHHHHHTTCCE-EEECCCCTTTTCCC
T ss_pred --CCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChHHHHHHHHHHHhcCCCE-EEEEeCcCCCCccH
Confidence 1127899999998543210000011 122344689999999994333333344444433 444 89999999865432
Q ss_pred chhHHHHhcCCCeEEeccccccc-cccccCccchhhcccCCCCchHHHHHHHHhCCC
Q 011076 258 GALSAVAATKSPVIFIGTGEHMD-EFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (494)
Q Consensus 258 ~~ls~~~~~g~Pi~fi~~Ge~i~-~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~ 313 (494)
. .... .+. .+. .+...+|+..|.| ++.|++.+.+.+++
T Consensus 158 ~--~~~~-------------~l~~~~g--~~v~~vSAktg~g-I~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 158 E--ELKG-------------LYESRYE--AKVLLVSALQKKG-FDDIGKTISEILPG 196 (423)
T ss_dssp T--HHHH-------------HSSCCTT--CCCCCCSSCCTTS-TTTHHHHHHHHSCC
T ss_pred H--HHHH-------------HHHHHcC--CCEEEEECCCCCC-HHHHHHHHHHhhhh
Confidence 1 2221 111 111 2556789999999 99999999998853
No 131
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.96 E-value=1.6e-09 Score=97.76 Aligned_cols=157 Identities=20% Similarity=0.079 Sum_probs=86.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+. .. ......++.++......+ .
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~------~~~~--------~~-------~~~~t~~~~~~~~~~~~~------------~ 52 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFA------QETF--------GK-------QYKQTIGLDFFLRRITLP------------G 52 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------GGGT--------TH-------HHHHTTTSSEEEEEEEET------------T
T ss_pred eEEEEEECcCCCCHHHHHHHHH------hCcC--------CC-------CCCCceeEEEEEEEEEeC------------C
Confidence 4569999999999999999998 3221 00 000111111111000000 0
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHHhc------cCCeeEEEEeCcc
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ------SVSVGAVIVTKMD 251 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f~~------~~~i~~vVltK~D 251 (494)
...+.+.|+||||........ ......+|.+++|+|++..... ......+.. ..++..+|.||+|
T Consensus 53 ~~~~~~~~~Dt~G~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~D 126 (178)
T 2hxs_A 53 NLNVTLQIWDIGGQTIGGKML------DKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126 (178)
T ss_dssp TEEEEEEEEECTTCCTTCTTH------HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGG
T ss_pred CCEEEEEEEECCCCccccchh------hHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccc
Confidence 013678999999975432111 1123468999999999864321 112222222 3453588999999
Q ss_pred CCCCccchhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 252 GHAKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 252 ~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
............. .+ ..+. .+...+|+..|.| ++.+++.+.+.+.
T Consensus 127 l~~~~~~~~~~~~-------------~~~~~~~--~~~~~~Sa~~~~g-i~~l~~~l~~~~~ 172 (178)
T 2hxs_A 127 LEHMRTIKPEKHL-------------RFCQENG--FSSHFVSAKTGDS-VFLCFQKVAAEIL 172 (178)
T ss_dssp GGGGCSSCHHHHH-------------HHHHHHT--CEEEEECTTTCTT-HHHHHHHHHHHHT
T ss_pred cccccccCHHHHH-------------HHHHHcC--CcEEEEeCCCCCC-HHHHHHHHHHHHH
Confidence 8532111011110 00 0111 2446689999999 9999999987764
No 132
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.96 E-value=1.2e-09 Score=101.34 Aligned_cols=154 Identities=12% Similarity=0.101 Sum_probs=84.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+|+|.+||||||+++.|. +.+. .+.+.+ + .+..+..... ..
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~------~~~~----~~~~~~---------t--~~~~~~~~~~--------------~~ 58 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFM------YDEF----VEDYEP---------T--KADSYRKKVV--------------LD 58 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCC----CTTCCT---------T--CCEEEEEEEE--------------ET
T ss_pred eEEEEEECCCCCCHHHHHHHHH------hCCC----CCCCCC---------c--cceEEEEEEE--------------EC
Confidence 4579999999999999999998 3321 111111 0 0111110000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHHhc-----cCCeeEEEEeCccC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ-----SVSVGAVIVTKMDG 252 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~~-----~~~i~~vVltK~D~ 252 (494)
...+.+.|+||||........ . .....+|.+++|+|++...... .....+.. ..|+ .+|+||+|.
T Consensus 59 ~~~~~~~l~Dt~G~~~~~~~~-~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl 131 (206)
T 2bov_A 59 GEEVQIDILDTAGQEDYAAIR-D-----NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF-LLVGNKSDL 131 (206)
T ss_dssp TEEEEEEEEECCCTTCCHHHH-H-----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCE-EEEEECTTC
T ss_pred CEEEEEEEEcCCChhhhHHHH-H-----HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEeccCc
Confidence 123578999999976543211 1 1122578999999997543211 11122221 3444 899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 253 ~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
............ +....+ ..+...+|+..|.| ++.+++.+.+.+
T Consensus 132 ~~~~~~~~~~~~------------~~~~~~--~~~~~~~Sa~~g~g-i~~l~~~l~~~i 175 (206)
T 2bov_A 132 EDKRQVSVEEAK------------NRAEQW--NVNYVETSAKTRAN-VDKVFFDLMREI 175 (206)
T ss_dssp GGGCCSCHHHHH------------HHHHHH--TCEEEEECTTTCTT-HHHHHHHHHHHH
T ss_pred cccccccHHHHH------------HHHHHh--CCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 543211111110 000111 12456689999999 999998887765
No 133
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.96 E-value=6e-10 Score=98.96 Aligned_cols=149 Identities=13% Similarity=0.038 Sum_probs=81.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|++||||||+++.|.. .+.. +.+.+. ........ +. .. .
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~------~~~~----~~~~~~-------~~~~~~~~-~~-~~----------------~ 48 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVT------GTFI----EKYDPT-------IEDFYRKE-IE-VD----------------S 48 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH------SCCC----SCCCTT-------CCEEEEEE-EE-ET----------------T
T ss_pred EEEEEECCCCCCHHHHHHHHHc------CCCc----ccCCCC-------cceeEEEE-EE-EC----------------C
Confidence 4699999999999999999982 2210 111110 00000000 00 00 1
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHHhc-----cCCeeEEEEeCccCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ-----SVSVGAVIVTKMDGH 253 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f~~-----~~~i~~vVltK~D~~ 253 (494)
..+.+.|+||||...... +.. .....++.+++|+|++..... ......+.. ..|+ .+|+||+|..
T Consensus 49 ~~~~~~l~D~~G~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~ 121 (167)
T 1kao_A 49 SPSVLEILDTAGTEQFAS-MRD-----LYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPV-ILVGNKVDLE 121 (167)
T ss_dssp EEEEEEEEECCCTTCCHH-HHH-----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCE-EEEEECGGGG
T ss_pred EEEEEEEEECCCchhhHH-HHH-----HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECCccc
Confidence 235688999999764332 111 112346899999999854321 111122211 2444 8999999974
Q ss_pred CCccch----hHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 254 AKGGGA----LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 254 ~~~g~~----ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
...... .......+ .+...+|+..|.| ++.+++.+.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~l~~~l~~~~ 164 (167)
T 1kao_A 122 SEREVSSSEGRALAEEWG------------------CPFMETSAKSKTM-VDELFAEIVRQM 164 (167)
T ss_dssp GGCCSCHHHHHHHHHHHT------------------SCEEEECTTCHHH-HHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHhC------------------CCEEEecCCCCcC-HHHHHHHHHHHH
Confidence 321111 11111111 2445678899988 998888886653
No 134
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.96 E-value=9.1e-10 Score=102.25 Aligned_cols=155 Identities=15% Similarity=0.080 Sum_probs=85.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+... .+.+ ..++.+...... ..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~------~~~~~~----~~~~-----------t~~~~~~~~~~~-------------~~ 53 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYA------DDSFTP----AFVS-----------TVGIDFKVKTIY-------------RN 53 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------TCCCCS----CCCC-----------CCSEEEEEEEEE-------------ET
T ss_pred eeEEEEECCCCCCHHHHHHHHh------cCCCCC----CcCC-----------ccceeEEEEEEE-------------EC
Confidence 3569999999999999999998 433210 0111 011111100000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHHhc---cCCeeEEEEeCccCCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ---SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~~---~~~i~~vVltK~D~~~ 254 (494)
...+.+.|+||||...... + .......+|.+++|+|++...... .....+.. .-.+..+|+||+|...
T Consensus 54 ~~~~~~~l~Dt~G~~~~~~-~-----~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 54 DKRIKLQIWDTAGLERYRT-I-----TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127 (203)
T ss_dssp TEEEEEEEEEECCSGGGHH-H-----HHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred CeEEEEEEEECCCchhhcc-h-----HHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence 1246789999999864321 1 111234689999999998643211 11222222 1123489999999854
Q ss_pred CccchhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.......... .+ ..+. .+...+|+..|.| ++.+++.+.+.+
T Consensus 128 ~~~~~~~~~~-------------~~~~~~~--~~~~~~Sa~~~~g-i~~l~~~l~~~i 169 (203)
T 1zbd_A 128 ERVVSSERGR-------------QLADHLG--FEFFEASAKDNIN-VKQTFERLVDVI 169 (203)
T ss_dssp SCCSCHHHHH-------------HHHHHHT--CEEEECBTTTTBS-SHHHHHHHHHHH
T ss_pred ccccCHHHHH-------------HHHHHCC--CeEEEEECCCCCC-HHHHHHHHHHHH
Confidence 3211111110 00 1111 1446689999999 999988887654
No 135
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.95 E-value=1.3e-09 Score=98.32 Aligned_cols=155 Identities=14% Similarity=0.087 Sum_probs=84.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+.. ..+.+ ..+..+...... ..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~------~~~~~----~~~~~-----------~~~~~~~~~~~~-------------~~ 52 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYV------TNKFD----TQLFH-----------TIGVEFLNKDLE-------------VD 52 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------HSCCC----C---------------CCSEEEEEEEEE-------------ET
T ss_pred eeEEEEECCCCCCHHHHHHHHH------cCCCC----CCCCC-----------ceeeeEEEEEEE-------------EC
Confidence 3569999999999999999998 22210 00000 011111110000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHH---h-----ccCCeeEEEEeC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAF---K-----QSVSVGAVIVTK 249 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f---~-----~~~~i~~vVltK 249 (494)
...+.+.|+||||...... + .......+|.+++|+|++..... ......+ . ...|+ .+|+||
T Consensus 53 ~~~~~~~i~Dt~G~~~~~~-~-----~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~-i~v~nK 125 (177)
T 1wms_A 53 GHFVTMQIWDTAGQERFRS-L-----RTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF-VILGNK 125 (177)
T ss_dssp TEEEEEEEEECCCCGGGHH-H-----HGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCE-EEEEEC
T ss_pred CEEEEEEEEeCCCchhhhh-h-----HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcE-EEEEEC
Confidence 1235789999999754321 1 11223468999999999865321 1111222 1 22344 899999
Q ss_pred ccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 250 MDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 250 ~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
+|...+.-. ..... .+.......+...+|+..|.| ++.+++.+.+.+
T Consensus 126 ~Dl~~~~~~-~~~~~-------------~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 172 (177)
T 1wms_A 126 IDISERQVS-TEEAQ-------------AWCRDNGDYPYFETSAKDATN-VAAAFEEAVRRV 172 (177)
T ss_dssp TTCSSCSSC-HHHHH-------------HHHHHTTCCCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CcccccccC-HHHHH-------------HHHHhcCCceEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 998633211 11110 010001223456789999999 999999887654
No 136
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.95 E-value=9.3e-10 Score=100.41 Aligned_cols=107 Identities=11% Similarity=0.064 Sum_probs=62.1
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHHh-----ccCCeeEEEEeCccCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFK-----QSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f~-----~~~~i~~vVltK~D~~~ 254 (494)
.+.+.|+||||....... .......+|.+++|+|++..... ......+. ...++ .+|+||+|...
T Consensus 69 ~~~~~l~Dt~G~~~~~~~------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~ 141 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSL------TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDI-VLCGNKSDLED 141 (195)
T ss_dssp EEEEEEEEECCSGGGHHH------HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCE-EEEEECTTCGG
T ss_pred EEEEEEEeCCCcHHHHHH------HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccccc
Confidence 357899999998543221 11223468999999999764322 11222222 23444 89999999854
Q ss_pred CccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.......... +....+. .+...+|+..|.| ++.+++.+.+.+
T Consensus 142 ~~~~~~~~~~------------~~~~~~~--~~~~~~Sa~~~~~-v~~l~~~l~~~~ 183 (195)
T 3bc1_A 142 QRAVKEEEAR------------ELAEKYG--IPYFETSAANGTN-ISHAIEMLLDLI 183 (195)
T ss_dssp GCCSCHHHHH------------HHHHHHT--CCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred ccccCHHHHH------------HHHHHcC--CCEEEEECCCCCC-HHHHHHHHHHHH
Confidence 2111111110 0000111 2446689999999 999999887765
No 137
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.95 E-value=9.6e-10 Score=100.52 Aligned_cols=155 Identities=19% Similarity=0.145 Sum_probs=88.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
+...|+++|.+||||||+++.|. +.+ ...+.|. .+.......
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~------~~~-----~~~~~~t-----------~~~~~~~~~---------------- 58 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFN------GED-----VDTISPT-----------LGFNIKTLE---------------- 58 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHT------TCC-----CSSCCCC-----------SSEEEEEEE----------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHh------cCC-----CCccccc-----------CccceEEEE----------------
Confidence 35679999999999999999998 544 1111110 011110000
Q ss_pred hccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhc----cCCeeEEEEeCccC
Q 011076 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDG 252 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~----~~~i~~vVltK~D~ 252 (494)
..++.+.|+||||...... + .......+|.+++|+|++......+ ....+.. .-.+..+|+||+|.
T Consensus 59 -~~~~~~~~~Dt~G~~~~~~-----~-~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 131 (186)
T 1ksh_A 59 -HRGFKLNIWDVGGQKSLRS-----Y-WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131 (186)
T ss_dssp -ETTEEEEEEEECCSHHHHT-----T-GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred -ECCEEEEEEECCCCHhHHH-----H-HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccC
Confidence 1256789999999743211 0 0111336899999999986543222 2222221 11234899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccccccccc-cccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 253 ~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l-~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
..... ...+....+ ...+ ....+...+|+..|.| ++.+++.+.+.+.
T Consensus 132 ~~~~~-~~~~~~~~~-----------~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i~ 179 (186)
T 1ksh_A 132 PGALS-CNAIQEALE-----------LDSIRSHHWRIQGCSAVTGED-LLPGIDWLLDDIS 179 (186)
T ss_dssp TTCCC-HHHHHHHTT-----------GGGCCSSCEEEEECCTTTCTT-HHHHHHHHHHHHH
T ss_pred CCCCC-HHHHHHHhC-----------hhhccCCceEEEEeeCCCCCC-HHHHHHHHHHHHH
Confidence 64321 111111111 0001 1112456789999999 9999999887663
No 138
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.95 E-value=1.5e-09 Score=99.84 Aligned_cols=156 Identities=16% Similarity=0.150 Sum_probs=88.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
+...|+++|.+||||||+++.|. +.+...... .+ ..+......
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~------~~~~~~~~~---~~-----------t~~~~~~~~----------------- 62 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLK------PSNAQSQNI---LP-----------TIGFSIEKF----------------- 62 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTS------CGGGCCSSC---CC-----------CSSEEEEEE-----------------
T ss_pred CccEEEEECCCCCCHHHHHHHHh------cCCCCCCCc---CC-----------ccceeEEEE-----------------
Confidence 35679999999999999999998 443211111 01 011111000
Q ss_pred hccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHHh-------ccCCeeEEEEeC
Q 011076 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFK-------QSVSVGAVIVTK 249 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~-------~~~~i~~vVltK 249 (494)
...++.+.|+||||........ ......+|.+++|+|++...... .....+. ...++ .+|+||
T Consensus 63 ~~~~~~~~l~Dt~G~~~~~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK 135 (190)
T 2h57_A 63 KSSSLSFTVFDMSGQGRYRNLW------EHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPI-LFFANK 135 (190)
T ss_dssp ECSSCEEEEEEECCSTTTGGGG------GGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCE-EEEEEC
T ss_pred EECCEEEEEEECCCCHHHHHHH------HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeE-EEEEeC
Confidence 0125789999999975432111 01234679999999998643221 1222222 12344 899999
Q ss_pred ccCCCCccchhHHHHhcCCCeEEecccccccccc-ccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 250 MDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 250 ~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~-~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
+|...... ...+..... ...+. ...+...+|+..|.| ++.|++.+.+.+.
T Consensus 136 ~Dl~~~~~-~~~~~~~~~-----------~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i~ 186 (190)
T 2h57_A 136 MDLRDAVT-SVKVSQLLC-----------LENIKDKPWHICASDAIKGEG-LQEGVDWLQDQIQ 186 (190)
T ss_dssp TTSTTCCC-HHHHHHHHT-----------GGGCCSSCEEEEECBTTTTBT-HHHHHHHHHHHC-
T ss_pred cCcccCCC-HHHHHHHhC-----------hhhccCCceEEEEccCCCCcC-HHHHHHHHHHHHH
Confidence 99864311 111111000 01111 112456789999999 9999999988773
No 139
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=98.95 E-value=5.4e-09 Score=114.07 Aligned_cols=48 Identities=25% Similarity=0.343 Sum_probs=41.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQL 148 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qL 148 (494)
.++++++.|.+|+||||++.+||.++++.|+||++|++|+ ++...+.+
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~-~~~l~~~l 54 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP-ASNVGQVF 54 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT-TCCHHHHT
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC-CcCHHHHh
Confidence 3567888899999999999999999999999999999998 45544433
No 140
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.95 E-value=4.9e-10 Score=103.24 Aligned_cols=156 Identities=13% Similarity=0.039 Sum_probs=85.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+|+|.+||||||+++.|. +.+... .+.+ ..++.+...... ..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~------~~~~~~----~~~~-----------t~~~~~~~~~~~-------------~~ 70 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFT------RNEFSH----DSRT-----------TIGVEFSTRTVM-------------LG 70 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHH------HSCCCS----SCCC-----------CSSEEEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHh------cCCCCC----CCCC-----------ccceeEEEEEEE-------------EC
Confidence 4579999999999999999998 322211 0111 011111110000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHHhcc---CCeeEEEEeCccCCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQS---VSVGAVIVTKMDGHA 254 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f~~~---~~i~~vVltK~D~~~ 254 (494)
...+.+.|+||||........ ......+|.+++|+|++..... ......+... -.+..+|+||+|...
T Consensus 71 ~~~~~~~i~Dt~G~~~~~~~~------~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 144 (193)
T 2oil_A 71 TAAVKAQIWDTAGLERYRAIT------SAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ 144 (193)
T ss_dssp TEEEEEEEEEESCCCTTCTTH------HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGG
T ss_pred CEEEEEEEEeCCCchhhhhhh------HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccc
Confidence 124678999999975432111 1123468999999999764321 1222222221 123489999999854
Q ss_pred CccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.......... .+.. ....+...+|++.|.| ++.+++.+.+.+
T Consensus 145 ~~~~~~~~~~-------------~~~~-~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i 186 (193)
T 2oil_A 145 AREVPTEEAR-------------MFAE-NNGLLFLETSALDSTN-VELAFETVLKEI 186 (193)
T ss_dssp GCCSCHHHHH-------------HHHH-HTTCEEEEECTTTCTT-HHHHHHHHHHHH
T ss_pred ccccCHHHHH-------------HHHH-HcCCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 2111111110 0000 0112445689999999 999998887654
No 141
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.95 E-value=2.1e-09 Score=99.07 Aligned_cols=155 Identities=17% Similarity=0.188 Sum_probs=86.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|.. .+. .+.+.+. .+..+..... ..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~------~~~----~~~~~~t-----------~~~~~~~~~~--------------~~ 52 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVK------GTF----RDTYIPT-----------IEDTYRQVIS--------------CD 52 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH------SCC----CCTTSCC-----------CCEEEEEEEE--------------ET
T ss_pred eeEEEEECCCCCcHHHHHHHHHc------CCC----CCcccCc-----------cccceeEEEE--------------EC
Confidence 45799999999999999999983 211 0111110 0000000000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc---HH---HHHHHHh---ccCCeeEEEEeCcc
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AF---DQAQAFK---QSVSVGAVIVTKMD 251 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~---~~---~~~~~f~---~~~~i~~vVltK~D 251 (494)
...+.+.|+||||...... +.. .....+|.+++|+|++.... .. ..+.... ...|+ .+|+||+|
T Consensus 53 ~~~~~~~l~Dt~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~pi-ilv~nK~D 125 (199)
T 2gf0_A 53 KSVCTLQITDTTGSHQFPA-MQR-----LSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPV-MLVGNKCD 125 (199)
T ss_dssp TEEEEEEEEECCGGGSCHH-HHH-----HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCE-EEEEECTT
T ss_pred CEEEEEEEEeCCChHHhHH-HHH-----HhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECcc
Confidence 1245789999999764332 111 11224799999999875322 11 1122222 13455 99999999
Q ss_pred CCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCCC
Q 011076 252 GHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (494)
Q Consensus 252 ~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~ 313 (494)
...+.-....... ....+. .+...+|+..|.| ++.|++.+.+.+.+
T Consensus 126 l~~~~~~~~~~~~-------------~~~~~~--~~~~~~Sa~~~~g-i~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 126 ETQREVDTREAQA-------------VAQEWK--CAFMETSAKMNYN-VKELFQELLTLETR 171 (199)
T ss_dssp CSSCSSCHHHHHH-------------HHHHHT--CEEEECBTTTTBS-HHHHHHHHHHHCSS
T ss_pred CCccccCHHHHHH-------------HHHHhC--CeEEEEecCCCCC-HHHHHHHHHHHHhh
Confidence 8653211111110 000111 2345689999999 99999999988753
No 142
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.94 E-value=3.1e-10 Score=105.44 Aligned_cols=155 Identities=15% Similarity=0.119 Sum_probs=85.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+.. ..+.+ ..+..++..... ..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~------~~~~~----~~~~~-----------t~~~~~~~~~~~-------------~~ 53 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYV------NKKFS----NQYKA-----------TIGADFLTKEVM-------------VD 53 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------HSCCC----SSCCC-----------CCSEEEEEEEEE-------------SS
T ss_pred ceEEEEECcCCCCHHHHHHHHH------cCCCC----CCCCC-----------cccceEEEEEEE-------------EC
Confidence 4579999999999999999998 32211 01111 011111110000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHHh--------ccCCeeEEEEeC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFK--------QSVSVGAVIVTK 249 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f~--------~~~~i~~vVltK 249 (494)
...+.+.|+||||...... + .......+|.+++|+|++..... ......+. ...++ .+|+||
T Consensus 54 ~~~~~~~l~Dt~G~~~~~~-~-----~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK 126 (207)
T 1vg8_A 54 DRLVTMQIWDTAGQERFQS-L-----GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF-VVLGNK 126 (207)
T ss_dssp SCEEEEEEEEECSSGGGSC-S-----CCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCE-EEEEEC
T ss_pred CEEEEEEEEeCCCcHHHHH-h-----HHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcE-EEEEEC
Confidence 1236789999999643211 0 01113368999999999764321 11112221 23454 899999
Q ss_pred ccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 250 MDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 250 ~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
+|...+.-. ..... .+.......+...+|+..|.| ++.+++.+.+.+
T Consensus 127 ~Dl~~~~~~-~~~~~-------------~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~~ 173 (207)
T 1vg8_A 127 IDLENRQVA-TKRAQ-------------AWCYSKNNIPYFETSAKEAIN-VEQAFQTIARNA 173 (207)
T ss_dssp TTSSCCCSC-HHHHH-------------HHHHHTTSCCEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred CCCcccccC-HHHHH-------------HHHHhcCCceEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 998633211 11110 110101223456789999999 999999987765
No 143
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.94 E-value=1.1e-09 Score=100.50 Aligned_cols=153 Identities=17% Similarity=0.153 Sum_probs=81.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
+..|+++|.+||||||+++.|+ +.+.. +.+.+ +. +..+..... ..
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~------~~~~~----~~~~~---------t~--~~~~~~~~~--------------~~ 65 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLI------QNHFV----DEYDP---------TI--EDSYRKQVV--------------ID 65 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSSCC----SCCCT---------TC--CEEEEEEEE--------------ET
T ss_pred eeEEEEECcCCCCHHHHHHHHH------cCCCc----cccCC---------cc--ceEEEEEEE--------------EC
Confidence 3579999999999999999998 32210 11111 00 011000000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH------HHHHHhc--cCCeeEEEEeCccC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD------QAQAFKQ--SVSVGAVIVTKMDG 252 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~------~~~~f~~--~~~i~~vVltK~D~ 252 (494)
...+++.|+||||...... +. ......+|.+++|+|++......+ .+..+.. ..++ .+|+||+|.
T Consensus 66 ~~~~~~~l~Dt~G~~~~~~-----~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ilv~nK~Dl 138 (190)
T 3con_A 66 GETCLLDILDTAGQEEYSA-----MR-DQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPM-VLVGNKCDL 138 (190)
T ss_dssp TEEEEEEEEECCC-----------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCE-EEEEECTTC
T ss_pred CEEEEEEEEECCChHHHHH-----HH-HHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeE-EEEEECCcC
Confidence 1246789999999653221 10 112346899999999875432111 1122221 3444 899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 253 ~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
..+......+.. ....+. .+...+|+..|.| ++.+++.+.+.+
T Consensus 139 ~~~~~~~~~~~~-------------~~~~~~--~~~~~~Sa~~~~g-i~~l~~~l~~~~ 181 (190)
T 3con_A 139 PTRTVDTKQAHE-------------LAKSYG--IPFIETSAKTRQG-VEDAFYTLVREI 181 (190)
T ss_dssp SCCCSCHHHHHH-------------HHHHHT--CCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CcccCCHHHHHH-------------HHHHcC--CeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 653211111110 001111 1456689999999 999999887765
No 144
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.94 E-value=9.9e-10 Score=98.14 Aligned_cols=153 Identities=14% Similarity=0.064 Sum_probs=81.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|++||||||+++.|. +.+.. +.+.+ ..+.......+. .. .
T Consensus 4 ~~i~v~G~~~~GKssli~~l~------~~~~~----~~~~~-------~~~~~~~~~~~~-~~----------------~ 49 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFV------EDKFN----PSFIT-------TIGIDFKIKTVD-IN----------------G 49 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHH------HCCCC----C--------------CCEEEEEEE-SS----------------S
T ss_pred eEEEEECcCCCCHHHHHHHHH------hCCCC----CCCCC-------ccceeEEEEEEE-EC----------------C
Confidence 469999999999999999998 33221 00100 000000000000 00 0
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHHhc---cCCeeEEEEeCccCCCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f~~---~~~i~~vVltK~D~~~~ 255 (494)
..+.+.|+||||........ ......+|.+++|+|++..... ......+.. .-.+..+|+||+|...+
T Consensus 50 ~~~~~~l~D~~G~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1g16_A 50 KKVKLQIWDTAGQERFRTIT------TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 123 (170)
T ss_dssp CEEEEEEECCTTGGGTSCCC------HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTC
T ss_pred EEEEEEEEeCCCChhhhhhH------HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcC
Confidence 13578999999964322110 1122367899999999754321 112222222 11234899999998433
Q ss_pred ccchhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.-. ..... .+ ..+. .+...+|+..|.| ++.+++.+.+.+
T Consensus 124 ~~~-~~~~~-------------~~~~~~~--~~~~~~Sa~~~~g-v~~l~~~l~~~~ 163 (170)
T 1g16_A 124 VVT-ADQGE-------------ALAKELG--IPFIESSAKNDDN-VNEIFFTLAKLI 163 (170)
T ss_dssp CSC-HHHHH-------------HHHHHHT--CCEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred ccC-HHHHH-------------HHHHHcC--CeEEEEECCCCCC-HHHHHHHHHHHH
Confidence 211 11110 00 0111 2446689999999 999999887765
No 145
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.93 E-value=2.9e-09 Score=98.95 Aligned_cols=156 Identities=15% Similarity=0.064 Sum_probs=82.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
+...|+++|.+||||||+++.|. +.+.. +.+.+ ..+..+..... ..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~------~~~~~----~~~~~-----------t~~~~~~~~~~-------------~~ 72 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLC------KNEFR----ENISA-----------TLGVDFQMKTL-------------IV 72 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHH------HCCCC-------------------------CEEEEE-------------EE
T ss_pred CCeEEEEECcCCCCHHHHHHHHH------hCCCC----ccCCC-----------CccceeEEEEE-------------EE
Confidence 35679999999999999999998 32210 00000 00111100000 00
Q ss_pred hccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHHhc----cCCeeEEEEeCccC
Q 011076 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDG 252 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f~~----~~~i~~vVltK~D~ 252 (494)
....+.+.|+||||......... .....+|.+++|+|++..... ......+.. ..|+ .+|+||+|.
T Consensus 73 ~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~NK~Dl 145 (199)
T 2p5s_A 73 DGERTVLQLWDTAGQERFRSIAK------SYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPI-MLVGNKADI 145 (199)
T ss_dssp TTEEEEEEEEECTTCTTCHHHHH------HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCE-EEEEECGGG
T ss_pred CCEEEEEEEEECCCCcchhhhHH------HHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCE-EEEEECccc
Confidence 01245689999999764332111 112357999999999754321 111222222 2444 899999997
Q ss_pred CCC------ccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 253 HAK------GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 253 ~~~------~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
... ........ +.+.. ..-.+...+|+..|.| ++++++.+.+.+
T Consensus 146 ~~~~~~~~~~~v~~~~~-------------~~~~~-~~~~~~~~~SA~~g~g-v~el~~~l~~~i 195 (199)
T 2p5s_A 146 RDTAATEGQKCVPGHFG-------------EKLAM-TYGALFCETSAKDGSN-IVEAVLHLAREV 195 (199)
T ss_dssp HHHHHHTTCCCCCHHHH-------------HHHHH-HHTCEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred ccccccccccccCHHHH-------------HHHHH-HcCCeEEEeeCCCCCC-HHHHHHHHHHHH
Confidence 421 00000000 01100 0012445689999999 999999887765
No 146
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.93 E-value=1.5e-09 Score=96.86 Aligned_cols=156 Identities=17% Similarity=0.172 Sum_probs=84.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|++||||||+++.|. +.+.. +.+.+ ..+..+...... ...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~------~~~~~----~~~~~-----------~~~~~~~~~~~~-------------~~~ 49 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFV------SNDFA----ENKEP-----------TIGAAFLTQRVT-------------INE 49 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHH------HSCCC----TTCCC-----------CSSEEEEEEEEE-------------ETT
T ss_pred EEEEEECCCCCCHHHHHHHHh------cCCCC----CCCCC-----------ccceeEEEEEEE-------------ECC
Confidence 458999999999999999998 22210 01111 011111000000 001
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhcc---CCeeEEEEeCccCCCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQS---VSVGAVIVTKMDGHAK 255 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~~---~~i~~vVltK~D~~~~ 255 (494)
..+.+.|+||||........ ......+|.+++|+|++......+ ....+... -.+..+|+||+|....
T Consensus 50 ~~~~~~~~D~~G~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 50 HTVKFEIWDTAGQERFASLA------PXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGH------HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred EEEEEEEEECCCChhhhhhh------hhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 24578999999975432211 112346899999999986432211 12222221 1234889999998543
Q ss_pred cc--chh-HHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 256 GG--GAL-SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 256 ~g--~~l-s~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
.. ... ... +.+.. ....+...+|+..|.| ++.+++.+.+.+.
T Consensus 124 ~~~~~v~~~~~-------------~~~~~-~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i~ 168 (170)
T 1ek0_A 124 GGERKVAREEG-------------EKLAE-EKGLLFFETSAKTGEN-VNDVFLGIGEKIP 168 (170)
T ss_dssp SCCCCSCHHHH-------------HHHHH-HHTCEEEECCTTTCTT-HHHHHHHHHTTSC
T ss_pred ccccCCCHHHH-------------HHHHH-HcCCEEEEEeCCCCCC-HHHHHHHHHHHHh
Confidence 11 110 110 00000 0012446689999999 9999999987764
No 147
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.92 E-value=4.3e-10 Score=103.45 Aligned_cols=155 Identities=15% Similarity=0.091 Sum_probs=84.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+.. ..+.+ ..+..+..... ...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~------~~~~~----~~~~~-----------t~~~~~~~~~~-------------~~~ 67 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYA------DDSFT----PAFVS-----------TVGIDFKVKTV-------------YRH 67 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCCC----CSCCC-----------CCCCEEEEEEE-------------EET
T ss_pred eeEEEEECCCCCCHHHHHHHHH------cCCCC----CCcCC-----------ceeEEEEEEEE-------------EEC
Confidence 4579999999999999999998 32211 00100 01111110000 000
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHHhcc---CCeeEEEEeCccCCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQS---VSVGAVIVTKMDGHA 254 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f~~~---~~i~~vVltK~D~~~ 254 (494)
...+.+.|+||||....... .......+|.+++|+|++..... ......+... -.+..+|+||+|...
T Consensus 68 ~~~~~~~l~Dt~G~~~~~~~------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 2gf9_A 68 DKRIKLQIWDTAGQERYRTI------TTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLED 141 (189)
T ss_dssp TEEEEEEEEECCSCCSSCCS------GGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred CeEEEEEEEeCCCcHHHhhh------HHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 12467899999996432210 01123468999999999754321 1122222221 123489999999854
Q ss_pred CccchhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.......... .+ ..+. .+...+|+..|.| ++.+++.+.+.+
T Consensus 142 ~~~~~~~~~~-------------~~~~~~~--~~~~~~Sa~~g~g-i~~l~~~l~~~i 183 (189)
T 2gf9_A 142 ERVVPAEDGR-------------RLADDLG--FEFFEASAKENIN-VKQVFERLVDVI 183 (189)
T ss_dssp GCCSCHHHHH-------------HHHHHHT--CEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred ccCCCHHHHH-------------HHHHHcC--CeEEEEECCCCCC-HHHHHHHHHHHH
Confidence 3111111110 00 0111 1446689999999 999999887654
No 148
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.92 E-value=3.8e-09 Score=96.40 Aligned_cols=157 Identities=21% Similarity=0.251 Sum_probs=84.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|.+||||||+++.|. +.+.. ..+.| ..+.....+ .
T Consensus 3 ki~v~G~~~~GKSsli~~l~------~~~~~----~~~~~--------~~t~~~~~~-~--------------------- 42 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLT------GKKVR----RGKRP--------GVTRKIIEI-E--------------------- 42 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHH------SCCCS----SSSST--------TCTTSCEEE-E---------------------
T ss_pred EEEEECCCCCCHHHHHHHHh------CcCCc----cCCCC--------CccceeEEE-e---------------------
Confidence 48999999999999999998 54311 01111 111111100 0
Q ss_pred CCcEEEEeCCCCCch-------hHHHHHHHHHH-HH-hcCCCEEEEEecCCCcccHH-------------HHHHHHhc-c
Q 011076 183 NCDLIIVDTSGRHKQ-------EAALFEEMRQV-SE-ATNPDLVIFVMDSSIGQAAF-------------DQAQAFKQ-S 239 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~-------~~~l~~el~~i-~~-~~~~d~vllVvDa~~g~~~~-------------~~~~~f~~-~ 239 (494)
...+.|+||||.... .+......... .. +...+.+++|+|+....... ........ .
T Consensus 43 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (190)
T 2cxx_A 43 WKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD 122 (190)
T ss_dssp ETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTT
T ss_pred cCCEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcC
Confidence 116789999996321 11121222222 22 34567899999986432221 11122222 3
Q ss_pred CCeeEEEEeCccCCCCccc-hhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 240 VSVGAVIVTKMDGHAKGGG-ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 240 ~~i~~vVltK~D~~~~~g~-~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
.|+ .+|+||+|....... ...+....+.|. .. ...+...+|+..|.| ++.+++.+.+.+.
T Consensus 123 ~pi-ilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~--~~~~~~~~Sa~~~~~-v~~l~~~l~~~~~ 183 (190)
T 2cxx_A 123 IPT-IVAVNKLDKIKNVQEVINFLAEKFEVPL---------SE--IDKVFIPISAKFGDN-IERLKNRIFEVIR 183 (190)
T ss_dssp CCE-EEEEECGGGCSCHHHHHHHHHHHHTCCG---------GG--HHHHEEECCTTTCTT-HHHHHHHHHHHHH
T ss_pred Cce-EEEeehHhccCcHHHHHHHHHHHhhhhh---------hc--cCCcEEEEecCCCCC-HHHHHHHHHHhcc
Confidence 454 999999998654211 112222222110 00 011335689999999 9999999887653
No 149
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.92 E-value=5.2e-09 Score=109.05 Aligned_cols=113 Identities=20% Similarity=0.133 Sum_probs=67.0
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc-c--HHHHHHHHhc-cCCeeEEEEeCccCCCCccch
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ-A--AFDQAQAFKQ-SVSVGAVIVTKMDGHAKGGGA 259 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~-~--~~~~~~~f~~-~~~i~~vVltK~D~~~~~g~~ 259 (494)
..+.|+||||....... + ...+..+|.+++|+|++.+. . ..+....... ..+...+|+||+|...... .
T Consensus 75 ~~~~iiDtPGh~~~~~~----~--~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~-~ 147 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMAT----M--LSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEE-A 147 (403)
T ss_dssp EEEEEEECCCCGGGHHH----H--HHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHH-H
T ss_pred ceEEEEECCCcHHHHHH----H--HHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHH-H
Confidence 57899999996543222 1 23345789999999998764 2 2222222221 2333489999999864321 1
Q ss_pred hHHHHhcCCCeEEeccccccccc-cccCccchhhcccCCCCchHHHHHHHHhCCC
Q 011076 260 LSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (494)
Q Consensus 260 ls~~~~~g~Pi~fi~~Ge~i~~l-~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~ 313 (494)
........ +.+... ....|..++|++.|.| ++.|++.+.+.++.
T Consensus 148 ~~~~~~i~---------~~l~~~~~~~~~ii~vSA~~g~g-i~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 148 LSQYRQIK---------QFTKGTWAENVPIIPVSALHKIN-IDSLIEGIEEYIKT 192 (403)
T ss_dssp HHHHHHHH---------HHHTTSTTTTCCEEECBTTTTBS-HHHHHHHHHHHSCC
T ss_pred HHHHHHHH---------HHHHhhCCCCCEEEEEECCCCcC-hHHHHHHHHHhCCC
Confidence 11111000 001111 1134567899999999 99999999997753
No 150
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.92 E-value=3.7e-09 Score=111.54 Aligned_cols=66 Identities=24% Similarity=0.388 Sum_probs=41.8
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc---------cHHHHHHHH-hccCCeeEEEEeCcc
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---------AAFDQAQAF-KQSVSVGAVIVTKMD 251 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~---------~~~~~~~~f-~~~~~i~~vVltK~D 251 (494)
.++.+.|+||||.... ...+ +..+..+|.+++|+|++.|. ...+.+... ...++...+|+||+|
T Consensus 93 ~~~~~~iiDTPGh~~f----~~~~--~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~D 166 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSF----VPNM--IGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMD 166 (439)
T ss_pred CCeEEEEEECCChHHH----HHHH--HhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCC
Confidence 4678999999997532 2222 22244689999999998763 222222222 223453489999999
Q ss_pred CC
Q 011076 252 GH 253 (494)
Q Consensus 252 ~~ 253 (494)
..
T Consensus 167 l~ 168 (439)
T 3j2k_7 167 DP 168 (439)
T ss_pred Cc
Confidence 85
No 151
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.91 E-value=3.7e-09 Score=98.69 Aligned_cols=157 Identities=15% Similarity=0.068 Sum_probs=84.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+.. +.+.+ ..+..+...... ..
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~------~~~~~----~~~~~-----------t~~~~~~~~~~~-------------~~ 74 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFK------TGAFS----ERQGS-----------TIGVDFTMKTLE-------------IQ 74 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH------HSCC-------------------------CEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHh------hCCCC----CCCCC-----------CcceEEEEEEEE-------------EC
Confidence 4569999999999999999997 32211 00000 011111100000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHHhc---cCCeeEEEEeCccCCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f~~---~~~i~~vVltK~D~~~ 254 (494)
...+.+.|+||||...... +. ......+|.+++|+|++..... ......+.. .-.+..+|.||+|...
T Consensus 75 ~~~~~l~i~Dt~G~~~~~~-~~-----~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 75 GKRVKLQIWDTAGQERFRT-IT-----QSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE 148 (201)
T ss_dssp TEEEEEEEECCTTCGGGHH-HH-----HHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred CEEEEEEEEECCCcHhHHH-HH-----HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc
Confidence 0136789999999754322 11 1223468999999998754321 112222222 1123488999999854
Q ss_pred CccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
......... +.+.....+.+...+|+..|.| ++.+++.+.+.+
T Consensus 149 ~~~v~~~~~-------------~~~~~~~~~~~~~~~SA~~g~g-i~~l~~~l~~~i 191 (201)
T 2hup_A 149 LREVSLAEA-------------QSLAEHYDILCAIETSAKDSSN-VEEAFLRVATEL 191 (201)
T ss_dssp GCCSCHHHH-------------HHHHHHTTCSEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred ccccCHHHH-------------HHHHHHcCCCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 211111111 0000001122456789999999 999999887765
No 152
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.90 E-value=1.3e-09 Score=98.61 Aligned_cols=156 Identities=14% Similarity=0.093 Sum_probs=83.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+.... .+.+ ..++.+...... ..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~------~~~~~~~---~~~~-----------t~~~~~~~~~~~-------------~~ 56 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFK------DGAFLAG---TFIS-----------TVGIDFRNKVLD-------------VD 56 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCCCCC---CCCC-----------CCSCEEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHH------hCCCCCC---CcCC-----------ceeeEEEEEEEE-------------EC
Confidence 4579999999999999999998 3222100 1111 011111110000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHHhc---cCCeeEEEEeCccCCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f~~---~~~i~~vVltK~D~~~ 254 (494)
...+.+.|+||||...... + .......+|.+++|+|++..... ......+.. .-.+..+|+||+|...
T Consensus 57 ~~~~~~~~~Dt~G~~~~~~-----~-~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 57 GVKVKLQMWDTAGQERFRS-----V-THAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp TEEEEEEEEECCCC--------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred CEEEEEEEEeCCCcHHHHH-----H-HHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 1235789999999643211 1 01113458999999999864321 112222222 2223489999999864
Q ss_pred CccchhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.......... .+ ..+ -.+...+|+..|.| ++.+++.+.+.+
T Consensus 131 ~~~~~~~~~~-------------~~~~~~--~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 172 (180)
T 2g6b_A 131 ERVVKREDGE-------------KLAKEY--GLPFMETSAKTGLN-VDLAFTAIAKEL 172 (180)
T ss_dssp CCCSCHHHHH-------------HHHHHH--TCCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred ccccCHHHHH-------------HHHHHc--CCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 3211111110 00 011 12445689999999 999999987765
No 153
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.90 E-value=3e-09 Score=104.85 Aligned_cols=172 Identities=15% Similarity=0.126 Sum_probs=76.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHH
Q 011076 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (494)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~ 178 (494)
+....|+++|.+||||||++|.|. +.++...+.. +....+ ....++.++......+
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~------~~~~~~~~~~----~~~~~~---~~t~~~~~~~~~~~~~----------- 61 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLF------LTDLYSPEYP----GPSHRI---KKTVQVEQSKVLIKEG----------- 61 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHS------SSCC----------------------CCCEEEEEEECC------------
T ss_pred ccEEEEEEECCCCCCHHHHHHHHh------CCCccccCCC----Cccccc---CCceEEEEEEEEEecC-----------
Confidence 334679999999999999999998 6666554321 000000 0111121111100000
Q ss_pred HhccCCcEEEEeCCCCCch------hHHHHHHH----HHHHHh-----------cCCCEEEEEecCCC-ccc--HHHHHH
Q 011076 179 FKKENCDLIIVDTSGRHKQ------EAALFEEM----RQVSEA-----------TNPDLVIFVMDSSI-GQA--AFDQAQ 234 (494)
Q Consensus 179 ~~~~~~dvIIIDTaG~~~~------~~~l~~el----~~i~~~-----------~~~d~vllVvDa~~-g~~--~~~~~~ 234 (494)
...+.+.|+||||.... -..+...+ ...... ..+|.++++++++. +.. .....+
T Consensus 62 --~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~ 139 (274)
T 3t5d_A 62 --GVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMK 139 (274)
T ss_dssp ---CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHH
T ss_pred --CeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHH
Confidence 01247899999998321 12222111 111110 12567788886653 433 233455
Q ss_pred HHhccCCeeEEEEeCccCCCCccchhHHHHhcCCCeEEecccccc-cccccc-CccchhhcccCCCCchHHHHHHHHhCC
Q 011076 235 AFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHM-DEFEVF-DVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 235 ~f~~~~~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f-~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
.+....|+ .+|+||+|...... +.... +.+ ..+... .+...+|+..|.| +..|.+.+.+.+|
T Consensus 140 ~l~~~~pv-i~V~nK~D~~~~~e--~~~~~------------~~i~~~l~~~~i~v~~~sa~~~~~-~~~l~~~l~~~~p 203 (274)
T 3t5d_A 140 RLHEKVNI-IPLIAKADTLTPEE--CQQFK------------KQIMKEIQEHKIKIYEFPETDDEE-ENKLVKKIKDRLP 203 (274)
T ss_dssp HHTTTSCE-EEEESSGGGSCHHH--HHHHH------------HHHHHHHHHTTCCCCCC------------CHHHHHTCS
T ss_pred HHhccCCE-EEEEeccCCCCHHH--HHHHH------------HHHHHHHHHcCCeEEcCCCCCChh-HHHHHHHHhcCCC
Confidence 55555555 99999999864321 11110 011 111111 1223467778888 8888888888765
No 154
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.89 E-value=7.4e-10 Score=103.27 Aligned_cols=156 Identities=14% Similarity=0.089 Sum_probs=85.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+|+|.+||||||+++.|. +.+.. . .+.+ ..++.+...... ..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~------~~~~~---~-~~~~-----------t~~~~~~~~~~~-------------~~ 53 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFS------DDTYT---N-DYIS-----------TIGVDFKIKTVE-------------LD 53 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------HCCCC---T-TCCC-----------SSCCCEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHh------cCCCC---C-CCCC-----------cccceeEEEEEE-------------EC
Confidence 3569999999999999999998 32210 0 0101 011111100000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhc---cCCeeEEEEeCccCCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ---SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~---~~~i~~vVltK~D~~~ 254 (494)
...+.+.|+||||....... .......+|.+++|+|++....... ....+.. .-.+..+|+||+|...
T Consensus 54 ~~~~~~~l~Dt~G~~~~~~~------~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 54 GKTVKLQIWDTAGQERFRTI------TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 127 (206)
T ss_dssp TEEEEEEEECCTTTTTTTCC------CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred CEEEEEEEEeCCChHHHHHH------HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 12457899999996432210 0112346899999999986532211 1222221 1123489999999864
Q ss_pred CccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.......... .+.. ....+...+|+..|.| ++.+++.+.+.+
T Consensus 128 ~~~~~~~~~~-------------~~~~-~~~~~~~~~Sa~~g~g-i~~l~~~l~~~i 169 (206)
T 2bcg_Y 128 KRVVEYDVAK-------------EFAD-ANKMPFLETSALDSTN-VEDAFLTMARQI 169 (206)
T ss_dssp TCCSCHHHHH-------------HHHH-HTTCCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred ccccCHHHHH-------------HHHH-HcCCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 3211111111 0000 0112456689999999 999999887765
No 155
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.89 E-value=7.2e-10 Score=102.21 Aligned_cols=156 Identities=16% Similarity=0.087 Sum_probs=83.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+|+|.+||||||+++.|... ......... .++.+...... ..
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~----~~~~~~~~t-----------------~~~~~~~~~~~-------------~~ 68 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD----TFTPAFVST-----------------VGIDFKVKTVY-------------RH 68 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH----TTCCCEEEE-----------------ETTTEEEEEEE-------------ET
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC----CCCcccCCC-----------------eeeEEEEEEEE-------------EC
Confidence 356999999999999999999832 111111110 01111100000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHHhc---cCCeeEEEEeCccCCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f~~---~~~i~~vVltK~D~~~ 254 (494)
...+.+.|+||||..... .+ .......+|.+++|+|++..... ......+.. .-.+..+|+||+|...
T Consensus 69 ~~~~~~~i~Dt~G~~~~~-----~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 142 (191)
T 3dz8_A 69 EKRVKLQIWDTAGQERYR-----TI-TTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142 (191)
T ss_dssp TTTEEEEEECHHHHHHCH-----HH-HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred CEEEEEEEEeCCChHHHH-----HH-HHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 125678999999953221 11 11223468999999999754221 112222222 1223489999999843
Q ss_pred CccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.......... .+.... -.+...+|++.|.| ++.+++.+.+.+
T Consensus 143 ~~~~~~~~~~-------------~~~~~~-~~~~~~~Sa~~~~g-i~~l~~~l~~~i 184 (191)
T 3dz8_A 143 ERVVPTEKGQ-------------LLAEQL-GFDFFEASAKENIS-VRQAFERLVDAI 184 (191)
T ss_dssp GCCSCHHHHH-------------HHHHHH-TCEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred ccccCHHHHH-------------HHHHHc-CCeEEEEECCCCCC-HHHHHHHHHHHH
Confidence 2111111110 000000 12445689999999 999999887654
No 156
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=98.89 E-value=3.5e-09 Score=110.15 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=30.5
Q ss_pred CCCeEEEEE-cCCCCcHHHHHHHHHHHHH------hcCCceEEEEcccCc
Q 011076 99 GKPSVIMFV-GLQGSGKTTTCTKYAYYHQ------KKGWKPALVCADTFR 141 (494)
Q Consensus 99 ~~~~vI~lv-G~~GvGKTTl~~kLA~~l~------~~g~kVaiVs~D~~r 141 (494)
..+++|+|+ |..|+||||++.+||.+|+ +.|++|++||+|++.
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~ 158 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQA 158 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSS
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC
Confidence 456788888 6779999999999999998 679999999999865
No 157
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=98.89 E-value=6.2e-09 Score=108.04 Aligned_cols=44 Identities=16% Similarity=0.086 Sum_probs=38.0
Q ss_pred CCCCeEEEEE-cCCCCcHHHHHHHHHHHHH------hcCCceEEEEcccCc
Q 011076 98 KGKPSVIMFV-GLQGSGKTTTCTKYAYYHQ------KKGWKPALVCADTFR 141 (494)
Q Consensus 98 ~~~~~vI~lv-G~~GvGKTTl~~kLA~~l~------~~g~kVaiVs~D~~r 141 (494)
...+++|+|+ |..|+||||++.+||.+|+ ++|++|++||+|++.
T Consensus 105 ~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~ 155 (398)
T 3ez2_A 105 YSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQS 155 (398)
T ss_dssp CCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTC
T ss_pred CCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC
Confidence 3457788888 6679999999999999998 469999999999964
No 158
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.88 E-value=8.5e-09 Score=96.57 Aligned_cols=114 Identities=21% Similarity=0.194 Sum_probs=62.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+. ...+.+ + ...++......
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~------~~~~----~~~~~~----------~--~~~~~~~~~~~-------------- 50 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLL------TGQY----RDTQTS----------I--TDSSAIYKVNN-------------- 50 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHH------HSCC----CCBCCC----------C--SCEEEEEECSS--------------
T ss_pred CCEEEEECCCCCCHHHHHHHHh------CCCc----ccccCC----------c--ceeeEEEEecC--------------
Confidence 4569999999999999999998 3220 011100 0 01111100000
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc-HHHHHHHHh---------ccCCeeEEEEeCc
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA-AFDQAQAFK---------QSVSVGAVIVTKM 250 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~-~~~~~~~f~---------~~~~i~~vVltK~ 250 (494)
..++.+.|+||||.......+... ....++.+++|+|++.... .......+. ..-.+..+|.||+
T Consensus 51 ~~~~~~~i~Dt~G~~~~~~~~~~~-----~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 125 (214)
T 2fh5_B 51 NRGNSLTLIDLPGHESLRFQLLDR-----FKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQ 125 (214)
T ss_dssp TTCCEEEEEECCCCHHHHHHHHHH-----HGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECT
T ss_pred CCccEEEEEECCCChhHHHHHHHH-----HHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECC
Confidence 015778999999986432212111 1346789999999975322 111111111 1112348999999
Q ss_pred cCCCC
Q 011076 251 DGHAK 255 (494)
Q Consensus 251 D~~~~ 255 (494)
|....
T Consensus 126 Dl~~~ 130 (214)
T 2fh5_B 126 DIAMA 130 (214)
T ss_dssp TSTTC
T ss_pred CCCCc
Confidence 98654
No 159
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.88 E-value=1.8e-08 Score=112.16 Aligned_cols=131 Identities=21% Similarity=0.173 Sum_probs=67.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
+...|+++|.+|+||||++++|..+..... +..-|+.. .....+...+ ...++.+..... .+
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~-~~g~v~~~-~~~~D~~~~e---~~~giTi~~~~~-------------~~ 70 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIH-KIGETHEG-ASQMDWMEQE---QDRGITITSAAT-------------TA 70 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC------------------------------CCSEE-------------EE
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCcc-ccccccCC-ceecccchhh---hhcCceEeeeeE-------------EE
Confidence 356799999999999999999985422110 10111110 0000000000 001111000000 00
Q ss_pred hccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH--HHHHHh-ccCCeeEEEEeCccCCCC
Q 011076 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD--QAQAFK-QSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~--~~~~f~-~~~~i~~vVltK~D~~~~ 255 (494)
...++.+.|+||||...........+ ..+|.+++|+|++.+..... ...... ..+++ .+|+||+|....
T Consensus 71 ~~~~~~i~liDTPG~~df~~~~~~~l------~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~-ilviNK~Dl~~~ 142 (693)
T 2xex_A 71 AWEGHRVNIIDTPGHVDFTVEVERSL------RVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPR-IVFVNKMDKLGA 142 (693)
T ss_dssp EETTEEEEEECCCCCSSCCHHHHHHH------HHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCE-EEEEECTTSTTC
T ss_pred EECCeeEEEEECcCCcchHHHHHHHH------HHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCE-EEEEECCCcccc
Confidence 11367899999999976543332222 24799999999987644322 222222 23454 899999998643
No 160
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.88 E-value=1.5e-09 Score=99.59 Aligned_cols=153 Identities=16% Similarity=0.117 Sum_probs=85.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||++++|. +.+.. . .+.+ ..+..+...... ..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~------~~~~~---~-~~~~-----------t~~~~~~~~~~~-------------~~ 60 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFT------DDTFD---P-ELAA-----------TIGVDFKVKTIS-------------VD 60 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCCC---T-TCCC-----------CCSEEEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHH------cCCCC---c-cCCC-----------ccceEEEEEEEE-------------EC
Confidence 3579999999999999999998 22210 0 0100 011111100000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHHhcc----CCeeEEEEeCccCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQS----VSVGAVIVTKMDGH 253 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f~~~----~~i~~vVltK~D~~ 253 (494)
...+.+.|+||||........ ......+|.+++|+|++..... ......+... -.+..+|+||+|..
T Consensus 61 ~~~~~~~i~Dt~G~~~~~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 61 GNKAKLAIWDTAGQERFRTLT------PSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp TEEEEEEEEEECSSGGGCCSH------HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred CeEEEEEEEeCCCchhhhhhh------HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 124678999999975332111 1223468999999999764321 1222333321 12348999999985
Q ss_pred CCccc---hhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 254 AKGGG---ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 254 ~~~g~---~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
.+.-. +..... .. ..+...+|+..|.| ++.+++.+.+.+.
T Consensus 135 ~~~~~~~~~~~~~~----------------~~--~~~~~~~Sa~~~~g-i~~l~~~l~~~~~ 177 (195)
T 1x3s_A 135 NREVDRNEGLKFAR----------------KH--SMLFIEASAKTCDG-VQCAFEELVEKII 177 (195)
T ss_dssp SCCSCHHHHHHHHH----------------HT--TCEEEECCTTTCTT-HHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHH----------------Hc--CCEEEEecCCCCCC-HHHHHHHHHHHHH
Confidence 43111 111111 11 12345689999999 9999999887663
No 161
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.88 E-value=1.5e-09 Score=98.94 Aligned_cols=155 Identities=16% Similarity=0.074 Sum_probs=83.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+.. +.+.+ ..+..+...... ..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~------~~~~~----~~~~~-----------~~~~~~~~~~~~-------------~~ 55 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFI------EKKFK----DDSNH-----------TIGVEFGSKIIN-------------VG 55 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------HSSCC----TTCCC-----------CSEEEEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHH------cCCCC----CCCCC-----------ccceEEEEEEEE-------------EC
Confidence 4569999999999999999998 22211 00101 001111100000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHH---HHHhccCCeeEEEEeCccCCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQA---QAFKQSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~---~~f~~~~~i~~vVltK~D~~~ 254 (494)
...+.+.|+||||...... + .......+|.+++|+|++...... ... ......-.+..+|+||+|...
T Consensus 56 ~~~~~~~l~Dt~G~~~~~~-~-----~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (186)
T 2bme_A 56 GKYVKLQIWDTAGQERFRS-V-----TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA 129 (186)
T ss_dssp TEEEEEEEEEECCSGGGHH-H-----HHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CEEEEEEEEeCCCcHHHHH-H-----HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 0135789999999754321 1 111234689999999998643211 111 121112223489999999853
Q ss_pred Cccch-hHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 255 KGGGA-LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 255 ~~g~~-ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
..... ..... .... ...+...+|+..|.| ++.+++.+.+.+
T Consensus 130 ~~~~~~~~~~~-------------~~~~--~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 171 (186)
T 2bme_A 130 DREVTFLEASR-------------FAQE--NELMFLETSALTGEN-VEEAFVQCARKI 171 (186)
T ss_dssp GCCSCHHHHHH-------------HHHH--TTCEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred ccccCHHHHHH-------------HHHH--cCCEEEEecCCCCCC-HHHHHHHHHHHH
Confidence 21110 11110 0000 112445689999999 999998886654
No 162
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.87 E-value=4.1e-09 Score=103.56 Aligned_cols=120 Identities=18% Similarity=0.197 Sum_probs=68.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||++|.|. +.++..++. + ..++.....+.. .
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~------~~~~~~~~~--~---------~~~t~~~~~~~~------------------~ 83 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSII------GERVVSISP--F---------QSEGPRPVMVSR------------------S 83 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------TSCCSCCCS--S---------SCCCSSCEEEEE------------------E
T ss_pred CeEEEEECCCCCCHHHHHHHHh------CCCcccccC--C---------CCcceeeEEEEE------------------e
Confidence 4579999999999999999999 666543332 1 111111111111 1
Q ss_pred ccCCcEEEEeCCCCCchh---HHHHHHHHHHHHhcCCCEEEEEecCCC-ccc--HHHHHHHHhccC-----CeeEEEEeC
Q 011076 181 KENCDLIIVDTSGRHKQE---AALFEEMRQVSEATNPDLVIFVMDSSI-GQA--AFDQAQAFKQSV-----SVGAVIVTK 249 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~---~~l~~el~~i~~~~~~d~vllVvDa~~-g~~--~~~~~~~f~~~~-----~i~~vVltK 249 (494)
..++.+.|+||||..... ....+.+........+|.+++|+|... ... .......+.+.. .+..+|+||
T Consensus 84 ~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK 163 (270)
T 1h65_A 84 RAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTH 163 (270)
T ss_dssp ETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred eCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEEC
Confidence 135679999999985432 333333322222235789999966542 122 122333333221 134899999
Q ss_pred ccCCCC
Q 011076 250 MDGHAK 255 (494)
Q Consensus 250 ~D~~~~ 255 (494)
+|....
T Consensus 164 ~Dl~~~ 169 (270)
T 1h65_A 164 AQFSPP 169 (270)
T ss_dssp CSCCCG
T ss_pred cccCCc
Confidence 998644
No 163
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.87 E-value=9.1e-09 Score=111.01 Aligned_cols=163 Identities=13% Similarity=0.110 Sum_probs=80.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCC-ChHHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTES-DPVRIAVEGVETF 179 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~-dp~~i~~~~l~~~ 179 (494)
...|+++|.+||||||+++.|. +.+.. . .+.+ ..++.+....... ..+.+ ..
T Consensus 41 ~~kV~lvG~~~vGKSSLl~~l~------~~~~~---~-~~~~-----------t~g~~~~~~~~~~~~~v~~------~~ 93 (535)
T 3dpu_A 41 EIKVHLIGDGMAGKTSLLKQLI------GETFD---P-KESQ-----------THGLNVVTKQAPNIKGLEN------DD 93 (535)
T ss_dssp EEEEEEESSSCSSHHHHHHHHH------C--------------------------CCCEEEEEGGGSGGGTT------CS
T ss_pred ceEEEEECCCCCCHHHHHHHHh------cCCCC---C-CCCC-----------ccceEEEEeccccccceee------cC
Confidence 4579999999999999999998 43321 0 0000 0111111000000 00000 00
Q ss_pred hccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHh---ccCCeeEEEEeCccCCCCc
Q 011076 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFK---QSVSVGAVIVTKMDGHAKG 256 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~---~~~~i~~vVltK~D~~~~~ 256 (494)
...++.+.|+||||...... +.. .....+|.+++|+|++...........+. ...|+ .+|.||+|.....
T Consensus 94 ~~~~~~~~i~Dt~G~e~~~~-~~~-----~~l~~~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~pv-ilV~NK~Dl~~~~ 166 (535)
T 3dpu_A 94 ELKECLFHFWDFGGQEIMHA-SHQ-----FFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPV-IVVMNKIDENPSY 166 (535)
T ss_dssp TTTTCEEEEECCCSCCTTTT-TCH-----HHHHSSEEEEEEECGGGGGGHHHHHHHHHHHSSSCCE-EEEECCTTTCTTC
T ss_pred CCceEEEEEEECCcHHHHHH-HHH-----HHccCCcEEEEEEeCCCchhHHHHHHHHHHhCCCCCE-EEEEECCCccccc
Confidence 01257899999999543221 111 11225899999999986644433333333 23455 8999999986543
Q ss_pred cchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 257 g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
........ +....+. .+...+|+..|.| ++.|++.+.+.+.
T Consensus 167 ~v~~~~~~------------~~~~~~~--~~~~~vSA~~g~g-i~eL~~~l~~~~~ 207 (535)
T 3dpu_A 167 NIEQKKIN------------ERFPAIE--NRFHRISCKNGDG-VESIAKSLKSAVL 207 (535)
T ss_dssp CCCHHHHH------------HHCGGGT--TCEEECCC------CTTHHHHHHHHHT
T ss_pred ccCHHHHH------------HHHHhcC--CceEEEecCcccC-HHHHHHHHHHHHh
Confidence 22111111 0001111 1345577777777 7777777766553
No 164
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.87 E-value=1.6e-09 Score=101.78 Aligned_cols=156 Identities=15% Similarity=0.073 Sum_probs=86.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceE-EEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPA-LVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVa-iVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
...|+++|.+||||||+++.|. +.+.. -... ....+.....+.. ..
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~------~~~~~~~~~~-----------t~~~~~~~~~~~~-~~--------------- 57 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVL------DGRFEKNYNA-----------TVGAVNHPVTFLD-DQ--------------- 57 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCT------TCSTTCEEET-----------TTTEEEEEEEEEB-TT---------------
T ss_pred ccEEEEECCCCCCHHHHHHHHh------cCCCCCCCCC-----------ccceeeEEEEEEe-CC---------------
Confidence 4579999999999999999998 43321 1111 0001111111111 00
Q ss_pred hccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHHh---c-cCCeeEEEEeCccC
Q 011076 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFK---Q-SVSVGAVIVTKMDG 252 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~---~-~~~i~~vVltK~D~ 252 (494)
...+.+.|+||||...... +. ......+|.+++|+|++.+.... .....+. . ..++ .+|+||+|.
T Consensus 58 -~~~~~~~l~Dt~G~~~~~~-~~-----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl 129 (218)
T 4djt_A 58 -GNVIKFNVWDTAGQEKKAV-LK-----DVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPI-VVCANKIDI 129 (218)
T ss_dssp -SCEEEEEEEEECSGGGTSC-CC-----HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCE-EEEEECTTC
T ss_pred -CcEEEEEEEecCCchhhch-HH-----HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCE-EEEEECCCC
Confidence 0125689999999643221 10 11234689999999998653221 1112222 1 2444 899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 253 ~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
............ .... ....+...+|++.|.| ++.+++.+.+.+.
T Consensus 130 ~~~~~~~~~~~~-------------~~~~-~~~~~~~~~Sa~~g~g-v~~l~~~l~~~~~ 174 (218)
T 4djt_A 130 KNRQKISKKLVM-------------EVLK-GKNYEYFEISAKTAHN-FGLPFLHLARIFT 174 (218)
T ss_dssp C----CCHHHHH-------------HHTT-TCCCEEEEEBTTTTBT-TTHHHHHHHHHHH
T ss_pred ccccccCHHHHH-------------HHHH-HcCCcEEEEecCCCCC-HHHHHHHHHHHHh
Confidence 643211111111 0000 1123456789999999 9999999888763
No 165
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.87 E-value=2.1e-09 Score=101.45 Aligned_cols=167 Identities=15% Similarity=0.135 Sum_probs=80.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
+..|+++|.+||||||+++.|. +.+.. ..+.+ +. ...+..... ..
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~------~~~~~----~~~~~---------t~--~~~~~~~~~--------------~~ 78 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFA------DGAFP----ESYTP---------TV--FERYMVNLQ--------------VK 78 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH------C-----------CC---------CC--CEEEEEEEE--------------ET
T ss_pred eEEEEEECcCCCCHHHHHHHHH------cCCCC----CCCCC---------cc--ceeEEEEEE--------------EC
Confidence 4679999999999999999998 43321 01111 00 011000000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHH----HHHHh---ccCCeeEEEEeCccCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ----AQAFK---QSVSVGAVIVTKMDGH 253 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~----~~~f~---~~~~i~~vVltK~D~~ 253 (494)
...+.+.|+||||...... +. ......+|.+++|+|++........ ...+. ...++ .+|+||+|..
T Consensus 79 ~~~~~l~l~Dt~G~~~~~~-----~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~ 151 (214)
T 2j1l_A 79 GKPVHLHIWDTAGQDDYDR-----LR-PLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPI-IVVGCKTDLR 151 (214)
T ss_dssp TEEEEEEEEEC---------------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCE-EEEEECGGGG
T ss_pred CEEEEEEEEECCCchhhhH-----HH-HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEEChhhh
Confidence 1245788999999643221 11 0112367899999999864322111 12222 23455 8999999986
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.... ........+....-...++.+.....+.+...+|+..|.| ++.+++.+.+.+
T Consensus 152 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g-i~el~~~l~~~~ 207 (214)
T 2j1l_A 152 KDKS-LVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDN-VHAVFQEAAEVA 207 (214)
T ss_dssp SCHH-HHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred ccch-hhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCC-HHHHHHHHHHHH
Confidence 5421 1111111000000000011111111223556789999999 999999987754
No 166
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.87 E-value=1.2e-09 Score=102.28 Aligned_cols=168 Identities=14% Similarity=0.069 Sum_probs=86.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
+...|+++|.+||||||+++.+.. ... .+.+.+ +............
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~------~~~----~~~~~~---------t~~~~~~~~~~~~--------------- 74 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTT------NAF----PGEYIP---------TVFDNYSANVMVD--------------- 74 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHH------SCC----CC-CCC---------CSEEEEEEEEECC---------------
T ss_pred CeEEEEEECcCCCCHHHHHHHHHh------CCC----CCCcCC---------eecceeEEEEEEC---------------
Confidence 356799999999999999999982 111 001111 0000000000000
Q ss_pred hccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH----HHHHHhc---cCCeeEEEEeCccC
Q 011076 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ---SVSVGAVIVTKMDG 252 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~----~~~~f~~---~~~i~~vVltK~D~ 252 (494)
...+.+.|+||||...... + .......+|.+++|+|++......+ ....+.. ..++ .+|+||+|.
T Consensus 75 -~~~~~l~i~Dt~G~~~~~~-----~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl 146 (204)
T 4gzl_A 75 -GKPVNLGLWDTAGLEDYDR-----L-RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTKLDL 146 (204)
T ss_dssp --CEEEEEEEEECCSGGGTT-----T-GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCE-EEEEECHHH
T ss_pred -CEEEEEEEEECCCchhhHH-----H-HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEechhh
Confidence 1235667999999853221 0 0112346899999999986543222 1222222 3444 899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 253 ~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
..... .................+.....-..+.+...+|++.|.| ++.+++.+.+.+
T Consensus 147 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g-i~~l~~~l~~~~ 203 (204)
T 4gzl_A 147 RDDKD-TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG-LKTVFDEAIRAV 203 (204)
T ss_dssp HTCHH-HHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTT-HHHHHHHHHHTT
T ss_pred ccchh-hhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCC-HHHHHHHHHHHh
Confidence 64421 1111111110000000001111111223456789999999 999999987653
No 167
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.87 E-value=1.5e-09 Score=99.62 Aligned_cols=155 Identities=16% Similarity=0.076 Sum_probs=86.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+.. +. .| + .+...... .
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~------~~~~~--~~---~~----------t-~~~~~~~~-----------------~ 62 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLH------LGDVV--TT---VP----------T-VGVNLETL-----------------Q 62 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC------CSCCE--EE---CS----------S-TTCCEEEE-----------------E
T ss_pred ceEEEEECCCCCCHHHHHHHHH------cCCCC--Cc---CC----------C-CceEEEEE-----------------E
Confidence 4579999999999999999996 43321 11 11 0 01110000 0
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhcc----CCeeEEEEeCccCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQS----VSVGAVIVTKMDGH 253 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~~----~~i~~vVltK~D~~ 253 (494)
..++.+.|+||||........ ......+|.+++|+|++....... ....+... -.+..+|+||+|..
T Consensus 63 ~~~~~~~~~Dt~G~~~~~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 136 (189)
T 2x77_A 63 YKNISFEVWDLGGQTGVRPYW------RCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLP 136 (189)
T ss_dssp ETTEEEEEEEECCSSSSCCCC------SSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTST
T ss_pred ECCEEEEEEECCCCHhHHHHH------HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCc
Confidence 125678999999975322100 011236899999999986533222 22222211 12348999999986
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
.... .-.+....+. +.... ...+...+|+..|.| ++.+++.+.+.+.
T Consensus 137 ~~~~-~~~~~~~~~~--------~~~~~--~~~~~~~~Sa~~~~g-i~~l~~~l~~~i~ 183 (189)
T 2x77_A 137 DAAS-EAEIAEQLGV--------SSIMN--RTWTIVKSSSKTGDG-LVEGMDWLVERLR 183 (189)
T ss_dssp TCCC-HHHHHHHTTG--------GGCCS--SCEEEEECCTTTCTT-HHHHHHHHHHHHH
T ss_pred CCCC-HHHHHHHhCh--------hhccC--CceEEEEccCCCccC-HHHHHHHHHHHHH
Confidence 4421 1112211110 00011 112456789999999 9999999877653
No 168
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.86 E-value=1.9e-09 Score=99.08 Aligned_cols=156 Identities=14% Similarity=0.076 Sum_probs=80.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+.. +.+.+ ..++.+...... ..
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~------~~~~~----~~~~~-----------t~~~~~~~~~~~-------------~~ 65 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFC------AGRFP----DRTEA-----------TIGVDFRERAVD-------------ID 65 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------HSSCC----SSCCC-----------CCSCCEEEEEEE-------------ET
T ss_pred eEEEEEECCCCCCHHHHHHHHH------cCCCC----CCCCC-----------CcceEEEEEEEE-------------EC
Confidence 4679999999999999999998 22211 00100 011111100000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc---HHHHHHHHhc-----cCCeeEEEEeCccC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ-----SVSVGAVIVTKMDG 252 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~---~~~~~~~f~~-----~~~i~~vVltK~D~ 252 (494)
...+.+.|+||||.......+. ......+|.+++|+|++.... .......+.. ..++ .+|+||+|.
T Consensus 66 ~~~~~~~l~Dt~G~~~~~~~~~-----~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl 139 (189)
T 1z06_A 66 GERIKIQLWDTAGQERFRKSMV-----QHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPR-ILVGNKCDL 139 (189)
T ss_dssp TEEEEEEEEECCCSHHHHTTTH-----HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCE-EEEEECTTC
T ss_pred CEEEEEEEEECCCchhhhhhhh-----HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccc
Confidence 1236789999999643210111 112346899999999975422 1112222221 2344 899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccC---CCCchHHHHHHHHhC
Q 011076 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG---MGDWSGFMDKIHEVV 311 (494)
Q Consensus 253 ~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G---~Gdi~~L~e~i~~~~ 311 (494)
............ .+..-. -.+...+|+..| .| ++.+++.+.+.+
T Consensus 140 ~~~~~v~~~~~~-------------~~~~~~-~~~~~~~Sa~~~~~~~~-i~~l~~~l~~~i 186 (189)
T 1z06_A 140 RSAIQVPTDLAQ-------------KFADTH-SMPLFETSAKNPNDNDH-VEAIFMTLAHKL 186 (189)
T ss_dssp GGGCCSCHHHHH-------------HHHHHT-TCCEEECCSSSGGGGSC-HHHHHHHHC---
T ss_pred cccceeCHHHHH-------------HHHHHc-CCEEEEEeCCcCCcccC-HHHHHHHHHHHH
Confidence 532111111110 000000 114456788888 77 888888876654
No 169
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.86 E-value=2.1e-09 Score=101.49 Aligned_cols=151 Identities=13% Similarity=0.044 Sum_probs=85.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.+.. +.....+.. ....+.....+.. .
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~-----~~~~~~~~~-----------t~~~~~~~~~~~~--~---------------- 60 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLT-----GEFEKKYVA-----------TLGVEVHPLVFHT--N---------------- 60 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHH-----HHHTCEEET-----------TTTEEEEEEEEEE--T----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHc-----CCCCCCCCC-----------ccceeEEEEEEEE--C----------------
Confidence 45799999999999999999542 111111111 1111111111110 0
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHHhc---cCCeeEEEEeCccCCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f~~---~~~i~~vVltK~D~~~ 254 (494)
...+.+.|+||||........ ......+|.+++|+|++..... ......+.. ..++ .+|+||+|...
T Consensus 61 ~~~~~~~i~Dt~G~~~~~~~~------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~ 133 (221)
T 3gj0_A 61 RGPIKFNVWDTAGQEKFGGLR------DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPI-VLCGNKVDIKD 133 (221)
T ss_dssp TEEEEEEEEEECSGGGTSCCC------HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCE-EEEEECTTSSS
T ss_pred CEEEEEEEEeCCChHHHhHHH------HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCE-EEEEECCcccc
Confidence 124678999999964321100 1122368999999999864321 112222222 3455 89999999864
Q ss_pred Cccc--hhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 255 KGGG--ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 255 ~~g~--~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
+.-. ...... ....+...+|+..|.| ++.+++.+.+.+
T Consensus 134 ~~~~~~~~~~~~------------------~~~~~~~~~Sa~~~~g-i~~l~~~l~~~l 173 (221)
T 3gj0_A 134 RKVKAKSIVFHR------------------KKNLQYYDISAKSNYN-FEKPFLWLARKL 173 (221)
T ss_dssp CSSCGGGCCHHH------------------HHTCEEEECBGGGTBT-TTHHHHHHHHHH
T ss_pred ccccHHHHHHHH------------------HcCCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 3211 011111 0112445689999999 999999988765
No 170
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.86 E-value=1.2e-09 Score=97.72 Aligned_cols=155 Identities=14% Similarity=0.151 Sum_probs=81.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+.. +.+.+ ..+..+...... ..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~------~~~~~----~~~~~-----------t~~~~~~~~~~~-------------~~ 51 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYC------ENKFN----DKHIT-----------TLGASFLTKKLN-------------IG 51 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH------HCCCC----SSCCC-----------CCSCEEEEEEEE-------------SS
T ss_pred ceEEEEECcCCCCHHHHHHHHH------cCCCC----cCCCC-----------ccceEEEEEEEE-------------EC
Confidence 3569999999999999999998 32210 01111 011111100000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHh----ccCCeeEEEEeCccCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK----QSVSVGAVIVTKMDGH 253 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~----~~~~i~~vVltK~D~~ 253 (494)
...+.+.|+||||...... +. ......+|.+++|+|++....... ....+. ...++ .+|+||+|..
T Consensus 52 ~~~~~l~i~Dt~G~~~~~~-----~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~ 124 (170)
T 1z08_A 52 GKRVNLAIWDTAGQERFHA-----LG-PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICL-CIVGNKIDLE 124 (170)
T ss_dssp SCEEEEEEEECCCC-------------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEE-EEEEECGGGG
T ss_pred CEEEEEEEEECCCcHhhhh-----hH-HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeE-EEEEECcccc
Confidence 1235788999999643211 10 011236799999999976432111 111222 22344 8999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
........... +....+. .+...+|+..|.| ++.+++.+.+.+
T Consensus 125 ~~~~~~~~~~~------------~~~~~~~--~~~~~~Sa~~~~g-i~~l~~~l~~~~ 167 (170)
T 1z08_A 125 KERHVSIQEAE------------SYAESVG--AKHYHTSAKQNKG-IEELFLDLCKRM 167 (170)
T ss_dssp GGCCSCHHHHH------------HHHHHTT--CEEEEEBTTTTBS-HHHHHHHHHHHH
T ss_pred cccccCHHHHH------------HHHHHcC--CeEEEecCCCCCC-HHHHHHHHHHHH
Confidence 42111111110 0000111 2345689999999 999999887654
No 171
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.86 E-value=2.1e-09 Score=100.16 Aligned_cols=155 Identities=15% Similarity=0.051 Sum_probs=81.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+|+|.+||||||+++.|. +.+...... + . .+..+...... ..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~------~~~~~~~~~----~-------t----~~~~~~~~~~~-------------~~ 70 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFI------ENKFKQDSN----H-------T----IGVEFGSRVVN-------------VG 70 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------C---------------------------CCEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHH------hCCCCccCC----C-------c----ccceeEEEEEE-------------EC
Confidence 4569999999999999999998 433221110 0 0 01111000000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHHhc---cCCeeEEEEeCccCCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ---SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~~---~~~i~~vVltK~D~~~ 254 (494)
...+.+.|+||||..... .+ .......+|.+++|+|++...... .....+.. .-.+..+|+||+|...
T Consensus 71 ~~~~~l~l~Dt~G~~~~~-----~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 144 (200)
T 2o52_A 71 GKTVKLQIWDTAGQERFR-----SV-TRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP 144 (200)
T ss_dssp TEEEEEEEECCTTHHHHS-----CC-CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG
T ss_pred CeeeEEEEEcCCCcHhHH-----HH-HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 013678999999953211 00 011234689999999998643211 12222221 1123489999999853
Q ss_pred Cccc-hhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 255 KGGG-ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 255 ~~g~-~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.... ...... .... ...+...+|+..|.| ++.+++.+.+.+
T Consensus 145 ~~~v~~~~~~~-------------~~~~--~~~~~~~~SA~~g~g-i~~l~~~l~~~i 186 (200)
T 2o52_A 145 EREVTFLEASR-------------FAQE--NELMFLETSALTGEN-VEEAFLKCARTI 186 (200)
T ss_dssp GCCSCHHHHHH-------------HHHH--TTCEEEEECTTTCTT-HHHHHHHHHHHH
T ss_pred ccccCHHHHHH-------------HHHH--cCCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 2111 011110 0000 112445689999999 999998887654
No 172
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.86 E-value=3.2e-09 Score=95.80 Aligned_cols=154 Identities=14% Similarity=0.087 Sum_probs=83.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|.. ... ...+.+ +. +..+...... .
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~------~~~----~~~~~~---------t~--~~~~~~~~~~--------------~ 53 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQ------SYF----VSDYDP---------TI--EDSYTKICSV--------------D 53 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH------SSC----CSSCCT---------TC--CEEEEEEEEE--------------T
T ss_pred ceEEEEECCCCCCHHHHHHHHHh------CcC----ccccCC---------Cc--CceEEEEEEE--------------C
Confidence 45799999999999999999983 211 001111 11 1111100000 0
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHH----h-ccCCeeEEEEeCccC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAF----K-QSVSVGAVIVTKMDG 252 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f----~-~~~~i~~vVltK~D~ 252 (494)
...+.+.|+||||........ .. ....+|.+++|+|++...... .....+ . ...++ .+|+||+|.
T Consensus 54 ~~~~~~~~~Dt~G~~~~~~~~-~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl 126 (181)
T 2fn4_A 54 GIPARLDILDTAGQEEFGAMR-EQ-----YMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPV-VLVGNKADL 126 (181)
T ss_dssp TEEEEEEEEECCCTTTTSCCH-HH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCE-EEEEECGGG
T ss_pred CEEEEEEEEECCCchhhHHHH-HH-----HHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccc
Confidence 013578899999975332111 11 112478999999998643211 111122 1 12344 899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 253 ~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
............ .+.. ....+...+|+..|.| ++.+++.+.+.+
T Consensus 127 ~~~~~v~~~~~~-------------~~~~-~~~~~~~~~Sa~~~~g-v~~l~~~l~~~~ 170 (181)
T 2fn4_A 127 ESQRQVPRSEAS-------------AFGA-SHHVAYFEASAKLRLN-VDEAFEQLVRAV 170 (181)
T ss_dssp GGGCCSCHHHHH-------------HHHH-HTTCEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred ccccccCHHHHH-------------HHHH-HcCCeEEEecCCCCCC-HHHHHHHHHHHH
Confidence 542111111110 0000 1112445689999999 999999887765
No 173
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.85 E-value=2.5e-09 Score=109.29 Aligned_cols=155 Identities=14% Similarity=0.148 Sum_probs=87.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhcc-CcceeccCCCCChHHHHHHHHHHHhc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKA-KIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~-~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
.|+|+|.|||||||+++.|. +.++.+ +. .++++.. .+.++. ..
T Consensus 160 ~V~lvG~~nvGKSTLln~L~------~~~~~i-~~-----------~~ftTl~p~~g~v~-~~----------------- 203 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVS------SAKPKI-AD-----------YHFTTLVPNLGMVE-TD----------------- 203 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSE------EECCEE-SS-----------TTSSCCCCCEEEEE-CS-----------------
T ss_pred eeeeeCCCCCCHHHHHHHHH------cCCCcc-cc-----------CCccccCceEEEEE-eC-----------------
Confidence 48999999999999999998 544433 22 1112211 111111 00
Q ss_pred cCCcEEEEeCCCCCch---hHHHHHHHHHHHHhcCCCEEEEEecCCCc--ccHHH----HHHHHhc------cCCeeEEE
Q 011076 182 ENCDLIIVDTSGRHKQ---EAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFD----QAQAFKQ------SVSVGAVI 246 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~---~~~l~~el~~i~~~~~~d~vllVvDa~~g--~~~~~----~~~~f~~------~~~i~~vV 246 (494)
....++|+||||.... ...+.... +.....++.+++|+|++.. .+..+ ....+.. ..| ..+|
T Consensus 204 ~~~~~~l~DtPG~i~~a~~~~~l~~~f--l~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p-~ilV 280 (342)
T 1lnz_A 204 DGRSFVMADLPGLIEGAHQGVGLGHQF--LRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP-QIIV 280 (342)
T ss_dssp SSCEEEEEEHHHHHHHTTCTTTTHHHH--HHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSC-BCBE
T ss_pred CCceEEEecCCCCcccccccchhHHHH--HHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCC-EEEE
Confidence 1367899999996321 11121111 1112347999999999751 22221 1122221 234 4899
Q ss_pred EeCccCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCCC
Q 011076 247 VTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (494)
Q Consensus 247 ltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~ 313 (494)
+||+|..........+.. .+....+...+|+..|.| ++.|++.+.+.+.+
T Consensus 281 ~NK~Dl~~~~e~~~~l~~----------------~l~~~~~v~~iSA~tg~g-i~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 281 ANKMDMPEAAENLEAFKE----------------KLTDDYPVFPISAVTREG-LRELLFEVANQLEN 330 (342)
T ss_dssp EECTTSTTHHHHHHHHHH----------------HCCSCCCBCCCSSCCSST-THHHHHHHHHHHTS
T ss_pred EECccCCCCHHHHHHHHH----------------HhhcCCCEEEEECCCCcC-HHHHHHHHHHHHhh
Confidence 999998643211111111 111113556799999999 99999999888753
No 174
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.85 E-value=7.3e-09 Score=95.16 Aligned_cols=131 Identities=18% Similarity=0.211 Sum_probs=69.2
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCc--eEEEEcccCcchhHHHHHhhhhc
Q 011076 77 QAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWK--PALVCADTFRAGAFDQLKQNATK 154 (494)
Q Consensus 77 ~~v~~eL~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~k--VaiVs~D~~r~~a~~qLk~~~~~ 154 (494)
..+.+++.+++....... ......|+++|++||||||+++.|. +.. ..+.+.+ + ..+
T Consensus 27 ~~l~~~l~~~~~~~~~~~---~~~~~~i~vvG~~g~GKSsll~~l~------~~~~~~~~~~~~---~--------~~~- 85 (193)
T 2ged_A 27 SQWREWIDEKLGGGSGGG---GSYQPSIIIAGPQNSGKTSLLTLLT------TDSVRPTVVSQE---P--------LSA- 85 (193)
T ss_dssp HHHHHHHHHHC-----------CCCCEEEEECCTTSSHHHHHHHHH------HSSCC-----------------------
T ss_pred HHHHHHHHHHHHhhcCCC---CCCCCEEEEECCCCCCHHHHHHHHh------cCCCCcccccCC---C--------cee-
Confidence 456666666665433221 1234579999999999999999998 322 1111110 0 000
Q ss_pred cCcceeccCCCCChHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---
Q 011076 155 AKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD--- 231 (494)
Q Consensus 155 ~~i~~~~~~~~~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~--- 231 (494)
..+ ..+.+.|+||||...........+.. ....+|.+++|+|++.......
T Consensus 86 --~~~----------------------~~~~~~l~Dt~G~~~~~~~~~~~~~~--~~~~~~~~i~v~d~~~~~~~~~~~~ 139 (193)
T 2ged_A 86 --ADY----------------------DGSGVTLVDFPGHVKLRYKLSDYLKT--RAKFVKGLIFMVDSTVDPKKLTTTA 139 (193)
T ss_dssp ---CC----------------------CCTTCSEEEETTCCBSSCCHHHHHHH--HGGGEEEEEEEEETTCCHHHHHHHH
T ss_pred --eee----------------------cCCeEEEEECCCCchHHHHHHHHHHh--hcccCCEEEEEEECCCCchhHHHHH
Confidence 000 25678999999986543222222211 1224689999999983222211
Q ss_pred -HHHHHh--------ccCCeeEEEEeCccCCCC
Q 011076 232 -QAQAFK--------QSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 232 -~~~~f~--------~~~~i~~vVltK~D~~~~ 255 (494)
....+. ...|+ .+|+||+|....
T Consensus 140 ~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~ 171 (193)
T 2ged_A 140 EFLVDILSITESSCENGIDI-LIACNKSELFTA 171 (193)
T ss_dssp HHHHHHHHHHHHHSTTCCCE-EEEEECTTSTTC
T ss_pred HHHHHHHhhhhhccccCCCE-EEEEEchHhcCC
Confidence 111111 13444 899999998643
No 175
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.85 E-value=2.5e-09 Score=100.15 Aligned_cols=166 Identities=13% Similarity=0.132 Sum_probs=85.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+..- .+.+ +. +..+..... ..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~------~~~~~~----~~~~---------t~--~~~~~~~~~--------------~~ 69 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFS------KDEFPE----VYVP---------TV--FENYVADIE--------------VD 69 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH------HSSCC----------------------CCEEEEEEE--------------ET
T ss_pred CcEEEEECcCCCCHHHHHHHHh------cCCCCC----cCCC---------cc--cceEEEEEE--------------EC
Confidence 4579999999999999999998 322210 1111 00 111100000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH----HHHHHhc---cCCeeEEEEeCccCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ---SVSVGAVIVTKMDGH 253 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~----~~~~f~~---~~~i~~vVltK~D~~ 253 (494)
...+.+.|+||||...... + .......+|.+++|+|++....... ....+.. ..|+ .+|+||+|..
T Consensus 70 ~~~~~~~i~Dt~G~~~~~~-----~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~ 142 (207)
T 2fv8_A 70 GKQVELALWDTAGQEDYDR-----L-RPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPI-ILVANKKDLR 142 (207)
T ss_dssp TEEEEEEEEECTTCTTCTT-----T-GGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCE-EEEEECGGGG
T ss_pred CEEEEEEEEECCCcHHHHH-----H-HHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhhh
Confidence 1236789999999753321 0 0012336899999999875432111 1222222 3455 8999999986
Q ss_pred CCccchhHHHHhcC-CCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 254 AKGGGALSAVAATK-SPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 254 ~~~g~~ls~~~~~g-~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.... ......... ..+. ...++....-..+.+...+|+..|.| ++.|++.+.+.+
T Consensus 143 ~~~~-~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~SA~~g~g-i~el~~~l~~~i 198 (207)
T 2fv8_A 143 SDEH-VRTELARMKQEPVR-TDDGRAMAVRIQAYDYLECSAKTKEG-VREVFETATRAA 198 (207)
T ss_dssp GCHH-HHHHHHHTTCCCCC-HHHHHHHHHHTTCSEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred cccc-chhhhhhcccCCCC-HHHHHHHHHhcCCCEEEEeeCCCCCC-HHHHHHHHHHHH
Confidence 4421 111111100 0000 00001110001112446689999999 999999987764
No 176
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.85 E-value=1.6e-09 Score=102.84 Aligned_cols=157 Identities=13% Similarity=0.076 Sum_probs=82.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+|+|.+||||||+++.|. +.+...... + ..++.+...... ..
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~------~~~~~~~~~----~-----------t~~~~~~~~~~~-------------~~ 58 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFT------KNEFNMDSK----S-----------TIGVEFATRTLE-------------IE 58 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHH------HCCCCC---------------------CCSEEEEEEE-------------ET
T ss_pred eeEEEEECcCCCCHHHHHHHHh------cCCCCCCCC----C-----------cccceeEEEEEE-------------EC
Confidence 3569999999999999999998 333211110 0 011111100000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhcc---CCeeEEEEeCccCCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQS---VSVGAVIVTKMDGHA 254 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~~---~~i~~vVltK~D~~~ 254 (494)
...+.+.|+||||...... + .......+|.+++|+|++......+ ....+... -.+..+|+||+|...
T Consensus 59 ~~~~~~~i~Dt~G~~~~~~-~-----~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 59 GKRIKAQIWDTAGQERYRA-I-----TSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH 132 (223)
T ss_dssp TEEEEEEEECCTTTTTTTC-C-----CGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGG
T ss_pred CEEEEEEEEECCCccchhh-h-----HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 0136789999999643211 0 0111236789999999986432221 12222221 123488999999853
Q ss_pred CccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
.......... +.... ...+...+|+..|.| ++.+++.+.+.+.
T Consensus 133 ~~~v~~~~~~------------~~~~~--~~~~~~~~Sa~~~~g-i~~l~~~l~~~i~ 175 (223)
T 3cpj_B 133 LRAVPTEESK------------TFAQE--NQLLFTETSALNSEN-VDKAFEELINTIY 175 (223)
T ss_dssp GCCSCHHHHH------------HHHHH--TTCEEEECCCC-CCC-HHHHHHHHHHHHT
T ss_pred ccccCHHHHH------------HHHHH--cCCEEEEEeCCCCCC-HHHHHHHHHHHHH
Confidence 2111111110 00001 112445689999999 9999999887764
No 177
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.85 E-value=4.4e-09 Score=98.75 Aligned_cols=108 Identities=12% Similarity=0.054 Sum_probs=60.2
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHh---c----cCCeeEEEEeCccCCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFK---Q----SVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~---~----~~~i~~vVltK~D~~~~ 255 (494)
.+.+.|+||||..... .+ .......+|.+++|+|++...........+. . .-.+..+|+||+|....
T Consensus 83 ~~~l~l~Dt~G~~~~~-----~~-~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~ 156 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFR-----SL-TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ 156 (217)
T ss_dssp EEEEEEEEEESHHHHH-----HH-HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGG
T ss_pred eEEEEEEECCCcHhHH-----hH-HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccc
Confidence 4678999999953211 11 1122346899999999976433222222221 1 11234899999998542
Q ss_pred ccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 256 ~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
......... +....+ ..+...+|+..|.| ++.+++.+.+.+
T Consensus 157 ~~v~~~~~~------------~~~~~~--~~~~~~~Sa~~g~g-i~~l~~~l~~~i 197 (217)
T 2f7s_A 157 REVNERQAR------------ELADKY--GIPYFETSAATGQN-VEKAVETLLDLI 197 (217)
T ss_dssp CCSCHHHHH------------HHHHHT--TCCEEEEBTTTTBT-HHHHHHHHHHHH
T ss_pred cccCHHHHH------------HHHHHC--CCcEEEEECCCCCC-HHHHHHHHHHHH
Confidence 111111110 000001 12445689999999 999988887654
No 178
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.84 E-value=1.6e-09 Score=100.44 Aligned_cols=158 Identities=13% Similarity=0.053 Sum_probs=58.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.++...+. +.+ +. ++.++..... ..
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~------~~~~~~~~~--~~~---------t~--~~~~~~~~~~-------------~~ 67 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFT------SKGSKFLKD--YAM---------TS--GVEVVVAPVT-------------IP 67 (208)
T ss_dssp EEEEEEC-----------------------------------------------------CEEEE-------------CT
T ss_pred ceEEEEECCCCCCHHHHHHHHH------hCCCcccCC--CCC---------cc--ceEEEEEEEE-------------EC
Confidence 4579999999999999999998 432222211 111 00 1000000000 00
Q ss_pred cc--CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHHhc------cCCeeEEEEeC
Q 011076 181 KE--NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ------SVSVGAVIVTK 249 (494)
Q Consensus 181 ~~--~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~~------~~~i~~vVltK 249 (494)
.. .+.+.|+||||..... .+ .......+|.+++|+|++...... .....+.. .-.+..+|+||
T Consensus 68 ~~~~~~~~~l~Dt~G~~~~~-----~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK 141 (208)
T 2yc2_C 68 DTTVSVELFLLDTAGSDLYK-----EQ-ISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141 (208)
T ss_dssp TSSEEEEEEEEETTTTHHHH-----HH-HSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEEC
T ss_pred CcccEEEEEEEECCCcHHHH-----HH-HHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEEC
Confidence 01 3578999999985321 11 111133689999999998653211 12222222 12234899999
Q ss_pred ccCCC-CccchhHHHHhcCCCeEEeccccccccccccCccchhhccc-CCCCchHHHHHHHHhC
Q 011076 250 MDGHA-KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL-GMGDWSGFMDKIHEVV 311 (494)
Q Consensus 250 ~D~~~-~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~-G~Gdi~~L~e~i~~~~ 311 (494)
+|... .......... +....+. .+...+|+.. |.| ++.+++.+.+.+
T Consensus 142 ~Dl~~~~~~v~~~~~~------------~~~~~~~--~~~~~~Sa~~~~~g-i~~l~~~i~~~~ 190 (208)
T 2yc2_C 142 TDLPPQRHQVRLDMAQ------------DWATTNT--LDFFDVSANPPGKD-ADAPFLSIATTF 190 (208)
T ss_dssp C-------CCCHHHHH------------HHHHHTT--CEEEECCC--------CHHHHHHHHHH
T ss_pred cccchhhccCCHHHHH------------HHHHHcC--CEEEEeccCCCCcC-HHHHHHHHHHHH
Confidence 99864 2111111110 0001111 2446689999 999 999999987765
No 179
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.84 E-value=4.8e-09 Score=108.45 Aligned_cols=116 Identities=16% Similarity=0.202 Sum_probs=69.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
-..|+|||+|||||||++|+|. |.++.+ +. .+++|+.-++-...+
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt------~~~~~v-~~-----------~pftT~~~~~g~~~~----------------- 116 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLT------GTESEA-AE-----------YEFTTLVTVPGVIRY----------------- 116 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHH------SBCCCG-GG-----------TCSSCCCEEEEEEEE-----------------
T ss_pred CCeEEEECCCCCCHHHHHHHHh------CCCCcc-cC-----------CCCceeeeeeEEEEe-----------------
Confidence 4579999999999999999999 766433 33 345665543221111
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHH-HHHhcCCCEEEEEecCCCcccHHHHH----HHHhccC--CeeEEEEeCccC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQ-VSEATNPDLVIFVMDSSIGQAAFDQA----QAFKQSV--SVGAVIVTKMDG 252 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~-i~~~~~~d~vllVvDa~~g~~~~~~~----~~f~~~~--~i~~vVltK~D~ 252 (494)
.+..+.|+||||.............+ +..+..+|.+++|+|++......+.+ ..+...+ .+..+++||.|.
T Consensus 117 -~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 117 -KGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp -TTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred -CCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 25678999999996543222111122 23344689999999998543333322 2222111 223789999985
No 180
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.84 E-value=3.6e-09 Score=97.90 Aligned_cols=153 Identities=14% Similarity=0.111 Sum_probs=83.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+.. ..+.+. .+..+..... ..
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~------~~~~~----~~~~~t-----------~~~~~~~~~~--------------~~ 72 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFL------TKRFI----WEYDPT-----------LESTYRHQAT--------------ID 72 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH------HSCCC----SCCCTT-----------CCEEEEEEEE--------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHH------hCCCC----cccCCC-----------CCceEEEEEE--------------EC
Confidence 4579999999999999999998 32211 111110 0011100000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---H---HHHHHHh--ccCCeeEEEEeCccC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---F---DQAQAFK--QSVSVGAVIVTKMDG 252 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~---~~~~~f~--~~~~i~~vVltK~D~ 252 (494)
...+.+.|+||||... . .+.. .....+|.+++|+|++..... . ..+..+. ...|+ .+|+||+|.
T Consensus 73 ~~~~~~~l~Dt~G~~~-~-~~~~-----~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~NK~Dl 144 (196)
T 2atv_A 73 DEVVSMEILDTAGQED-T-IQRE-----GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTL-ILVGNKADL 144 (196)
T ss_dssp TEEEEEEEEECCCCCC-C-HHHH-----HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCE-EEEEECGGG
T ss_pred CEEEEEEEEECCCCCc-c-cchh-----hhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcE-EEEEECccc
Confidence 1246789999999875 1 1111 112357999999999753221 1 1122222 13444 899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCC-CCchHHHHHHHHhC
Q 011076 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGM-GDWSGFMDKIHEVV 311 (494)
Q Consensus 253 ~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~-Gdi~~L~e~i~~~~ 311 (494)
............ +....+ ..+...+|+..|. | ++.+++.+.+.+
T Consensus 145 ~~~~~v~~~~~~------------~~~~~~--~~~~~~~Sa~~g~~g-i~~l~~~l~~~i 189 (196)
T 2atv_A 145 DHSRQVSTEEGE------------KLATEL--ACAFYECSACTGEGN-ITEIFYELCREV 189 (196)
T ss_dssp GGGCCSCHHHHH------------HHHHHH--TSEEEECCTTTCTTC-HHHHHHHHHHHH
T ss_pred ccccccCHHHHH------------HHHHHh--CCeEEEECCCcCCcC-HHHHHHHHHHHH
Confidence 542111011000 000111 1244568999999 7 999999887654
No 181
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.84 E-value=5.4e-09 Score=95.06 Aligned_cols=154 Identities=14% Similarity=0.084 Sum_probs=81.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|.. ... .+.+.+ + .+..+...... .
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~------~~~----~~~~~~---------t--~~~~~~~~~~~--------------~ 62 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQ------KIF----VDDYDP---------T--IEDSYLKHTEI--------------D 62 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH------SCC----CSCCCT---------T--CCEEEEEEEEE--------------T
T ss_pred ceEEEEECCCCCCHHHHHHHHHh------CCC----CCCCCC---------C--ccceeEEEEEe--------------C
Confidence 45789999999999999999982 111 001111 0 01111000000 0
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc---HHHHHHHH---h--ccCCeeEEEEeCccC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAF---K--QSVSVGAVIVTKMDG 252 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~---~~~~~~~f---~--~~~~i~~vVltK~D~ 252 (494)
...+.+.|+||||........ . .....+|.+++|+|++.... .......+ . ...|+ .+|+||+|.
T Consensus 63 ~~~~~l~i~Dt~G~~~~~~~~-~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl 135 (183)
T 3kkq_A 63 NQWAILDVLDTAGQEEFSAMR-E-----QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM-ILVANKVDL 135 (183)
T ss_dssp TEEEEEEEEECCSCGGGCSSH-H-----HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCE-EEEEECTTC
T ss_pred CcEEEEEEEECCCchhhHHHH-H-----HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcE-EEEEECCCc
Confidence 123456679999975432111 1 11224799999999986422 11111222 1 12344 899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcc-cCCCCchHHHHHHHHhC
Q 011076 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL-LGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 253 ~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~-~G~Gdi~~L~e~i~~~~ 311 (494)
............ +....+. .+...+|+. .|.| ++.+++.+.+.+
T Consensus 136 ~~~~~v~~~~~~------------~~~~~~~--~~~~~~Sa~~~~~~-v~~l~~~l~~~i 180 (183)
T 3kkq_A 136 MHLRKVTRDQGK------------EMATKYN--IPYIETSAKDPPLN-VDKTFHDLVRVI 180 (183)
T ss_dssp STTCCSCHHHHH------------HHHHHHT--CCEEEEBCSSSCBS-HHHHHHHHHHHH
T ss_pred hhccCcCHHHHH------------HHHHHhC--CeEEEeccCCCCCC-HHHHHHHHHHHH
Confidence 542211111110 0001111 244567888 8999 999998887654
No 182
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=98.83 E-value=1.4e-08 Score=103.98 Aligned_cols=39 Identities=28% Similarity=0.243 Sum_probs=36.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH--hcCCceEEEEccc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ--KKGWKPALVCADT 139 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~--~~g~kVaiVs~D~ 139 (494)
.+++++.|..|+||||++.+||.+++ +.|++|++|++|+
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~ 58 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDP 58 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 46788889999999999999999999 8899999999996
No 183
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.83 E-value=7.2e-10 Score=103.19 Aligned_cols=154 Identities=14% Similarity=0.094 Sum_probs=84.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+|+|.+||||||+++.|. +.+.. ..+.+ + .+..+...... .
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~------~~~~~----~~~~~---------t--~~~~~~~~~~~--------------~ 68 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFV------EGEFS----EGYDP---------T--VENTYSKIVTL--------------G 68 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------HSCCC----SCCCC---------C--SEEEEEEEEC----------------
T ss_pred cEEEEEECCCCcCHHHHHHHHH------hCCCC----CCCCC---------c--cceEEEEEEEE--------------C
Confidence 4679999999999999999998 32221 11111 0 01111110000 0
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHHhc-----cCCeeEEEEeCccC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ-----SVSVGAVIVTKMDG 252 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~~-----~~~i~~vVltK~D~ 252 (494)
...+.+.|+||||....... .......+|.+++|+|++...... .....+.. ..++ .+|+||+|.
T Consensus 69 ~~~~~~~l~Dt~G~~~~~~~------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl 141 (201)
T 3oes_A 69 KDEFHLHLVDTAGQDEYSIL------PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPV-VLVGNKADL 141 (201)
T ss_dssp --CEEEEEEEECCCCTTCCC------CGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCE-EEEEECTTC
T ss_pred CEEEEEEEEECCCccchHHH------HHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccC
Confidence 12567899999996532210 011233689999999998543221 12222222 2344 899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 253 ~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
........... +.+.. ....+...+|+..|.| ++.+++.+.+.+
T Consensus 142 ~~~~~v~~~~~-------------~~~~~-~~~~~~~~~Sa~~~~~-v~~l~~~l~~~i 185 (201)
T 3oes_A 142 SPEREVQAVEG-------------KKLAE-SWGATFMESSARENQL-TQGIFTKVIQEI 185 (201)
T ss_dssp GGGCCSCHHHH-------------HHHHH-HHTCEEEECCTTCHHH-HHHHHHHHHHHH
T ss_pred ccccccCHHHH-------------HHHHH-HhCCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 53321111111 00000 0112445689999999 999999887765
No 184
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.82 E-value=2.4e-09 Score=97.01 Aligned_cols=165 Identities=16% Similarity=0.107 Sum_probs=80.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.+. +.+. .+.+.+. .. ..+...... .
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~------~~~~----~~~~~~t---------~~--~~~~~~~~~--------------~ 52 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYT------SNTF----PTDYVPT---------VF--DNFSANVVV--------------N 52 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH------HSCC----C---------------------CBCCCC----------------
T ss_pred eEEEEEECCCCCCHHHHHHHHh------cCCC----CCCCCCe---------ee--eeEEEEEEE--------------C
Confidence 4569999999999999999998 2221 0111110 00 000000000 0
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH----HHHHHhc---cCCeeEEEEeCccCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ---SVSVGAVIVTKMDGH 253 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~----~~~~f~~---~~~i~~vVltK~D~~ 253 (494)
...+.+.|+||||...... + .......+|.+++|+|++......+ ....+.. ..|+ .+|+||+|..
T Consensus 53 ~~~~~~~i~Dt~G~~~~~~-----~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~ 125 (182)
T 3bwd_D 53 GATVNLGLWDTAGQEDYNR-----L-RPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI-VLVGTKLDLR 125 (182)
T ss_dssp -----CEEECCCC-CTTTT-----T-GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCE-EEEEECHHHH
T ss_pred CEEEEEEEEECCCChhhhh-----h-HHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEechhhh
Confidence 1245667999999753221 0 0112346899999999975432111 2222322 3454 8999999975
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
..... ... .....++. ...++.+.....+.+...+|++.|.| ++.+++.+.+.+
T Consensus 126 ~~~~~-~~~-~~~~~~v~-~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i 179 (182)
T 3bwd_D 126 DDKQF-FID-HPGAVPIT-TVQGEELKKLIGAPAYIECSSKSQEN-VKGVFDAAIRVV 179 (182)
T ss_dssp TCHHH-HHH-C--CCCCC-HHHHHHHHHHHTCSEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred cCccc-ccc-cccCCCCC-HHHHHHHHHHcCCCEEEEEECCCCCC-HHHHHHHHHHHH
Confidence 43211 000 00000000 00001111111123456689999999 999999887654
No 185
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.82 E-value=1.7e-08 Score=94.12 Aligned_cols=161 Identities=20% Similarity=0.184 Sum_probs=84.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCc-eEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWK-PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~k-VaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
...|+++|++||||||+++.|+ |.. +..+..+ ...+.. ...+.
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~------g~~~~~~~~~~-----------~G~~~~-~~~~~------------------ 69 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLT------NQKSLARTSKT-----------PGRTQL-INLFE------------------ 69 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTC------CC------------------------CC-EEEEE------------------
T ss_pred CcEEEEECCCCCCHHHHHHHHh------CCCccccccCC-----------Ccccee-eEEEE------------------
Confidence 4579999999999999999998 654 3322221 111111 00000
Q ss_pred hccCCcEEEEeCCCCCchh------HHHHHHHHHHHH-hcCCCEEEEEecCCCcccHHH-HHHH-Hhc-cCCeeEEEEeC
Q 011076 180 KKENCDLIIVDTSGRHKQE------AALFEEMRQVSE-ATNPDLVIFVMDSSIGQAAFD-QAQA-FKQ-SVSVGAVIVTK 249 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~------~~l~~el~~i~~-~~~~d~vllVvDa~~g~~~~~-~~~~-f~~-~~~i~~vVltK 249 (494)
..+ .+.|+||||..... ..+...+..+.. ....+.+++|.|++.+....+ .... ... .+++ .+|.||
T Consensus 70 -~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~v~nK 146 (210)
T 1pui_A 70 -VAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAV-LVLLTK 146 (210)
T ss_dssp -EET-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCE-EEEEEC
T ss_pred -ecC-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCe-EEEEec
Confidence 011 56899999985321 111111212221 234677899999876543322 2222 222 2333 678999
Q ss_pred ccCCCCccch--hHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCCC
Q 011076 250 MDGHAKGGGA--LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (494)
Q Consensus 250 ~D~~~~~g~~--ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~ 313 (494)
+|....+... +..+. ..+.+.....+..++|++.+.| ++.+++.+.+.+++
T Consensus 147 ~D~~s~~~~~~~~~~~~------------~~~~~~~~~~~~~~~Sal~~~~-~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 147 ADKLASGARKAQLNMVR------------EAVLAFNGDVQVETFSSLKKQG-VDKLRQKLDTWFSE 199 (210)
T ss_dssp GGGSCHHHHHHHHHHHH------------HHHGGGCSCEEEEECBTTTTBS-HHHHHHHHHHHHC-
T ss_pred ccCCCchhHHHHHHHHH------------HHHHhcCCCCceEEEeecCCCC-HHHHHHHHHHHHhh
Confidence 9976432111 11111 1111222233456789999999 99999999887643
No 186
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.82 E-value=1.3e-08 Score=108.58 Aligned_cols=67 Identities=16% Similarity=0.247 Sum_probs=41.5
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc---------cHHHHHHHHh-ccCCeeEEEEeCcc
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---------AAFDQAQAFK-QSVSVGAVIVTKMD 251 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~---------~~~~~~~~f~-~~~~i~~vVltK~D 251 (494)
.++.+.|+||||........ ...+..+|.+++|+|++.+. ...+.+.... ...+...+|+||+|
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~------~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~D 182 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNA------IMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMD 182 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHH------HHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGG
T ss_pred CCceEEEEECCCcHHHHHHH------HHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcC
Confidence 46789999999986532221 23345789999999998752 1112222211 12343488999999
Q ss_pred CCC
Q 011076 252 GHA 254 (494)
Q Consensus 252 ~~~ 254 (494)
...
T Consensus 183 l~~ 185 (483)
T 3p26_A 183 NVD 185 (483)
T ss_dssp GGT
T ss_pred ccc
Confidence 865
No 187
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.82 E-value=4.4e-09 Score=97.40 Aligned_cols=167 Identities=14% Similarity=0.078 Sum_probs=84.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+ ..+ .+.+ ++ +..+...... .
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~------~~~--~~~--~~~~---------t~--~~~~~~~~~~--------------~ 64 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYT------TNG--YPT--EYIP---------TA--FDNFSAVVSV--------------D 64 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH------C------------C---------CS--SEEEEEEEEE--------------T
T ss_pred ceEEEEECCCCCCHHHHHHHHH------hCC--CCC--CCCC---------cc--cceeEEEEEE--------------C
Confidence 4679999999999999999998 433 111 1111 11 1111100000 0
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH----HHHHHhc---cCCeeEEEEeCccCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ---SVSVGAVIVTKMDGH 253 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~----~~~~f~~---~~~i~~vVltK~D~~ 253 (494)
...+.+.|+||||...... + . ......+|.+++|+|++......+ ....+.. ..++ .+|.||+|..
T Consensus 65 ~~~~~~~i~Dt~G~~~~~~-~----~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~ 137 (201)
T 2q3h_A 65 GRPVRLQLCDTAGQDEFDK-L----R-PLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPI-ILVGTQSDLR 137 (201)
T ss_dssp TEEEEEEEEECCCSTTCSS-S----G-GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCE-EEEEECGGGG
T ss_pred CEEEEEEEEECCCCHHHHH-H----h-HhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEECHhhh
Confidence 0135677999999754221 1 0 012346899999999975432221 1122222 3455 8999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
................+. ...++.+.....+.+...+|+..|.| ++.+++.+.+.+
T Consensus 138 ~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~~ 193 (201)
T 2q3h_A 138 EDVKVLIELDKCKEKPVP-EEAAKLLAEEIKAASYIECSALTQKN-LKEVFDAAIVAG 193 (201)
T ss_dssp GCHHHHHHHHTTTCCCCC-HHHHHHHHHHHTCSEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred hchhhhhhhcccccccCC-HHHHHHHHHhcCCcEEEEEecCCCCC-HHHHHHHHHHHH
Confidence 431100000000000000 00001111111122456789999999 999999887665
No 188
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.82 E-value=1.9e-08 Score=109.92 Aligned_cols=108 Identities=16% Similarity=0.204 Sum_probs=67.8
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH--HH-HHHhccCCeeEEEEeCccCCCCcc-c
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD--QA-QAFKQSVSVGAVIVTKMDGHAKGG-G 258 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~--~~-~~f~~~~~i~~vVltK~D~~~~~g-~ 258 (494)
.+.+.|+||||........ .. ....+|.+++|+|++.|..... .. ......+++ .+|+||+|.....- .
T Consensus 72 ~~~inliDTPGh~dF~~ev----~r--~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipi-IvviNKiDl~~a~~~~ 144 (600)
T 2ywe_A 72 TYKLHLIDTPGHVDFSYEV----SR--ALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVI-IPVINKIDLPSADVDR 144 (600)
T ss_dssp EEEEEEECCCCSGGGHHHH----HH--HHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEE-EEEEECTTSTTCCHHH
T ss_pred eEEEEEEECCCcHhHHHHH----HH--HHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCE-EEEEeccCccccCHHH
Confidence 3678899999987644322 21 1236799999999998754332 11 222334554 89999999854321 1
Q ss_pred hhHHH-HhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCCC
Q 011076 259 ALSAV-AATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (494)
Q Consensus 259 ~ls~~-~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~ 313 (494)
..... ...+. ...+..++|++.|.| ++.|++.+.+.++.
T Consensus 145 v~~el~~~lg~---------------~~~~vi~vSAktg~G-I~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 145 VKKQIEEVLGL---------------DPEEAILASAKEGIG-IEEILEAIVNRIPP 184 (600)
T ss_dssp HHHHHHHTSCC---------------CGGGCEECBTTTTBS-HHHHHHHHHHHSCC
T ss_pred HHHHHHHhhCC---------------CcccEEEEEeecCCC-chHHHHHHHHhccc
Confidence 11111 11111 012357799999999 99999999998863
No 189
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.82 E-value=7.1e-09 Score=108.00 Aligned_cols=128 Identities=17% Similarity=0.175 Sum_probs=71.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcch-hHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG-AFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~-a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
...|+++|.+|+||||++++|...+.+.|... .|... ..+.+... ...++.+..... .+
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~------~~~~~~~~d~~~~e-~~~GiTi~~~~~-------------~~ 70 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNV------EVKDYGDIDKAPEE-RARGITINTAHV-------------EY 70 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTS------CCCCHHHHSCSHHH-HHHTCCCSCEEE-------------EE
T ss_pred eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccc------cccchhhccCCHHH-HHcCCCEEeeee-------------Ee
Confidence 45799999999999999999998776665410 00000 00100000 001111100000 01
Q ss_pred hccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH--HHHHHHHhc-cCCeeEEEEeCccCCC
Q 011076 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~--~~~~~~f~~-~~~i~~vVltK~D~~~ 254 (494)
...++.+.|+||||...... .+ ...+..+|.+++|+|++.+... .+....... .++...+|+||+|...
T Consensus 71 ~~~~~~~~iiDtpG~~~f~~----~~--~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 71 ETAKRHYSHVDCPGHADYIK----NM--ITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp ECSSCEEEEEECCCSGGGHH----HH--HHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCC
T ss_pred ccCCeEEEEEECCChHHHHH----HH--HHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccC
Confidence 11357899999999865322 22 2234578999999999876432 222222222 2442378999999864
No 190
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.81 E-value=1.9e-09 Score=97.95 Aligned_cols=166 Identities=14% Similarity=0.091 Sum_probs=86.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|.+||||||+++.|.. .+. ...+.+. ............ .
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~------~~~----~~~~~~t---------~~~~~~~~~~~~----------------~ 50 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTT------NAF----PGEYIPT---------VFDNYSANVMVD----------------G 50 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH------SSC----CSSCCCC---------SCCEEEEEEEET----------------T
T ss_pred EEEEEECCCCCCHHHHHHHHHc------CCC----CCCcCCc---------ccceeEEEEEEC----------------C
Confidence 4689999999999999999972 211 0111110 000000000000 1
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH----HHHHHhc---cCCeeEEEEeCccCCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ---SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~----~~~~f~~---~~~i~~vVltK~D~~~ 254 (494)
..+.+.|+||||...... + .......+|.+++|+|++......+ ....+.. ..|+ .+|+||+|...
T Consensus 51 ~~~~~~i~Dt~G~~~~~~-----~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~ 123 (186)
T 1mh1_A 51 KPVNLGLWDTAGQEDYDR-----L-RPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTKLDLRD 123 (186)
T ss_dssp EEEEEEEECCCCSGGGTT-----T-GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCE-EEEEECHHHHT
T ss_pred EEEEEEEEECCCCHhHHH-----H-HHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCE-EEEeEcccccc
Confidence 245678999999854321 1 0112336899999999986432211 1222222 3454 89999999854
Q ss_pred CccchhHHHHhcC-CCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 255 KGGGALSAVAATK-SPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 255 ~~g~~ls~~~~~g-~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
... ......... ..+. ...++.+..-..+.+...+|+..|.| ++.+++.+.+.+.
T Consensus 124 ~~~-~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~~~ 179 (186)
T 1mh1_A 124 DKD-TIEKLKEKKLTPIT-YPQGLAMAKEIGAVKYLECSALTQRG-LKTVFDEAIRAVL 179 (186)
T ss_dssp CHH-HHHHHHHTTCCCCC-HHHHHHHHHHTTCSEEEECCTTTCTT-HHHHHHHHHHHHS
T ss_pred cch-hhhhhcccccccCC-HHHHHHHHHhcCCcEEEEecCCCccC-HHHHHHHHHHHHh
Confidence 321 111111000 0000 00001110001123556799999999 9999999988764
No 191
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.81 E-value=2.1e-09 Score=97.83 Aligned_cols=156 Identities=13% Similarity=0.074 Sum_probs=64.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+.. ..+ .+. .+..+...... ..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~------~~~~~----~~~--------~~t---~~~~~~~~~~~-------------~~ 53 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFS------EDAFN----STF--------IST---IGIDFKIRTIE-------------LD 53 (183)
T ss_dssp EEEEEEECCCCC--------------------------CH--------HHH---HCEEEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHH------hCCCC----CCC--------CCc---ccceeEEEEEE-------------EC
Confidence 3569999999999999999998 32210 000 000 11111100000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhcc---CCeeEEEEeCccCCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQS---VSVGAVIVTKMDGHA 254 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~~---~~i~~vVltK~D~~~ 254 (494)
...+.+.|+||||...... + .......+|.+++|+|++....... ....+... -.+..+|.||+|...
T Consensus 54 ~~~~~~~l~Dt~G~~~~~~-----~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 54 GKRIKLQIWDTAGQERFRT-----I-TTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND 127 (183)
T ss_dssp TEEEEEEEEEC---------------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred CEEEEEEEEcCCCChhhhh-----h-HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc
Confidence 0236789999999643211 1 0111336899999999986432211 22222221 123489999999854
Q ss_pred CccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.......... +....+. .+...+|+..|.| ++.+++.+.+.+
T Consensus 128 ~~~v~~~~~~------------~~~~~~~--~~~~~~Sa~~~~~-i~~l~~~l~~~i 169 (183)
T 2fu5_C 128 KRQVSKERGE------------KLALDYG--IKFMETSAKANIN-VENAFFTLARDI 169 (183)
T ss_dssp CCCSCHHHHH------------HHHHHHT--CEEEECCC---CC-HHHHHHHHHHHH
T ss_pred cCcCCHHHHH------------HHHHHcC--CeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 3211111110 0000111 2445689999999 999999887765
No 192
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.80 E-value=1.4e-08 Score=102.91 Aligned_cols=155 Identities=18% Similarity=0.080 Sum_probs=85.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
+..|+|+|.+||||||+++.|. +.+.. +.- | + .++.+....
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~------~~~~~--~~~---p----------T-~~~~~~~~~----------------- 205 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLK------LGEIV--TTI---P----------T-IGFNVETVE----------------- 205 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTC------SSCCE--EEE---E----------E-TTEEEEEEE-----------------
T ss_pred cceEEEECCCCccHHHHHHHHh------CCCCC--Ccc---c----------c-cceEEEEEe-----------------
Confidence 3479999999999999999997 54421 110 1 0 111111100
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHH-hcc---CCeeEEEEeCccCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAF-KQS---VSVGAVIVTKMDGH 253 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f-~~~---~~i~~vVltK~D~~ 253 (494)
..++.+.|+||||...... + .......+|.+++|+|++....... ....+ ... -.+..+|+||+|..
T Consensus 206 ~~~~~l~i~Dt~G~~~~~~-----~-~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~ 279 (329)
T 3o47_A 206 YKNISFTVWDVGGQDKIRP-----L-WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 279 (329)
T ss_dssp ETTEEEEEEECC-----CC-----S-HHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred cCcEEEEEEECCCCHhHHH-----H-HHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCC
Confidence 1356789999999542211 1 1112346799999999975433222 12222 111 12348999999986
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
... ....+....+.. ... ....+...+|++.|.| +++|++.+.+.+.
T Consensus 280 ~~~-~~~~i~~~~~~~--------~~~--~~~~~~~~vSAk~g~g-i~el~~~l~~~l~ 326 (329)
T 3o47_A 280 NAM-NAAEITDKLGLH--------SLR--HRNWYIQATCATSGDG-LYEGLDWLSNQLR 326 (329)
T ss_dssp TCC-CHHHHHHHHTCT--------TCC--SSCEEEEECBTTTTBT-HHHHHHHHHHHHT
T ss_pred ccc-CHHHHHHHhchh--------hhh--cCCCEEEEEECCCCcC-HHHHHHHHHHHHH
Confidence 432 112222222110 000 1112456789999999 9999999987663
No 193
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.80 E-value=3.4e-08 Score=94.87 Aligned_cols=120 Identities=23% Similarity=0.251 Sum_probs=65.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+|+|++||||||+++.|. |.++... . .+ ...++..-..... .
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~------g~~~~~~-~---~~------~~~~t~~~~~~~~------------------~ 74 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSIL------GRKVFHS-G---TA------AKSITKKCEKRSS------------------S 74 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------TSCCSCC-----------------CCSCEEEEE------------------E
T ss_pred ceEEEEECCCCCCHHHHHHHHc------CCCcCcc-C---CC------CCceeeeEEEEEE------------------E
Confidence 4679999999999999999999 6555211 1 00 0011111110000 0
Q ss_pred ccCCcEEEEeCCCCCchh---HHHHHHHHHHHH--hcCCCEEEEEecCCCccc-HHHHHHH----Hhcc-CCeeEEEEeC
Q 011076 181 KENCDLIIVDTSGRHKQE---AALFEEMRQVSE--ATNPDLVIFVMDSSIGQA-AFDQAQA----FKQS-VSVGAVIVTK 249 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~---~~l~~el~~i~~--~~~~d~vllVvDa~~g~~-~~~~~~~----f~~~-~~i~~vVltK 249 (494)
..+..+.|+||||..... ....+++..... ...++.+++|+|++.... ....+.. |... ..+..+|+||
T Consensus 75 ~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 75 WKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp ETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred eCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 124678999999986432 233344443332 235799999999864322 1222222 2221 1235899999
Q ss_pred ccCCC
Q 011076 250 MDGHA 254 (494)
Q Consensus 250 ~D~~~ 254 (494)
+|...
T Consensus 155 ~D~~~ 159 (239)
T 3lxx_A 155 KDDLG 159 (239)
T ss_dssp GGGC-
T ss_pred CccCC
Confidence 99753
No 194
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.79 E-value=5.1e-09 Score=97.49 Aligned_cols=165 Identities=14% Similarity=0.132 Sum_probs=84.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+.. ..+.+. .+..+..... ..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~------~~~~~----~~~~~t-----------~~~~~~~~~~--------------~~ 69 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFS------KDQFP----EVYVPT-----------VFENYIADIE--------------VD 69 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------HSSCC----SSCCCS-----------SCCCCEEEEE--------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHH------hCcCC----cccCCc-----------ccceEEEEEE--------------EC
Confidence 3579999999999999999998 32210 111110 0000000000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH----HHHHHhc---cCCeeEEEEeCccCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ---SVSVGAVIVTKMDGH 253 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~----~~~~f~~---~~~i~~vVltK~D~~ 253 (494)
...+.+.|+||||...... +. ......+|.+++|+|++....... ....+.. ..++ .+|+||+|..
T Consensus 70 ~~~~~l~i~Dt~G~~~~~~-----~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~ 142 (201)
T 2gco_A 70 GKQVELALWDTAGQEDYDR-----LR-PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI-ILVGNKKDLR 142 (201)
T ss_dssp TEEEEEEEECCCCSGGGTT-----TG-GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCE-EEEEECGGGT
T ss_pred CEEEEEEEEECCCchhHHH-----HH-HHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEecHHhh
Confidence 1245789999999643221 00 012336899999999875432111 1222222 3455 8999999986
Q ss_pred CCccchhHHHHhcCC-CeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 254 AKGGGALSAVAATKS-PVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~-Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
..... ......... .+. ...++....-..+.+...+|+..|.| ++.|++.+.+.
T Consensus 143 ~~~~~-~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~SA~~g~g-i~~l~~~i~~~ 197 (201)
T 2gco_A 143 QDEHT-RRELAKMKQEPVR-SEEGRDMANRISAFGYLECSAKTKEG-VREVFEMATRA 197 (201)
T ss_dssp TCHHH-HHHHHTTTCCCCC-HHHHHHHHHHTTCSEEEECCTTTCTT-HHHHHHHHHHH
T ss_pred cCccc-hhhhcccccCcCC-HHHHHHHHHhCCCcEEEEeeCCCCCC-HHHHHHHHHHH
Confidence 54211 111110000 000 00001110001122446689999999 99999988664
No 195
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.79 E-value=1.4e-08 Score=108.39 Aligned_cols=156 Identities=15% Similarity=0.030 Sum_probs=90.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+. +.. .| | .+..+....
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~------~~~~--~~~---~~----------T-~~~~~~~~~----------------- 362 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLK------LGQS--VTT---IP----------T-VGFNVETVT----------------- 362 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSSC--CCC---CC----------C-SSEEEEEEE-----------------
T ss_pred ceeEEEEcCCCCCHHHHHHHHh------cCCC--CCc---CC----------c-cceeEEEEE-----------------
Confidence 3578999999999999999998 3331 111 01 1 111111100
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhc----cCCeeEEEEeCccCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDGH 253 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~----~~~i~~vVltK~D~~ 253 (494)
..++.+.|+||||....... .......+|.+++|+|++....... ....+.. .-.+..+|+||+|..
T Consensus 363 ~~~~~~~l~Dt~G~~~~~~~------~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 436 (497)
T 3lvq_E 363 YKNVKFNVWDVGGQDKIRPL------WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 436 (497)
T ss_dssp SSSCEEEEEEECCCGGGSGG------GGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSS
T ss_pred eCCEEEEEEECCCcHHHHHH------HHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCC
Confidence 13678999999996543211 1122346899999999986543222 2222211 112348999999986
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCCC
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~ 313 (494)
.... ...+....+.+.. .....+...+|++.|.| +++|++.+.+.+..
T Consensus 437 ~~~~-~~~~~~~~~~~~~----------~~~~~~~~~~SA~~g~g-i~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 437 DAMK-PHEIQEKLGLTRI----------RDRNWYVQPSCATSGDG-LYEGLTWLTSNYKS 484 (497)
T ss_dssp SCCC-HHHHHHHTTCTTC----------CSSCEEEEECBTTTTBT-HHHHHHHHHHHCC-
T ss_pred cCCC-HHHHHHHhchhhh----------hcCCeEEEEEECCCCCC-HHHHHHHHHHHHHh
Confidence 4321 1122222221110 01223456799999999 99999999998853
No 196
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.78 E-value=8.2e-09 Score=96.06 Aligned_cols=155 Identities=15% Similarity=0.142 Sum_probs=84.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|+ +.+... +. .+ .. ...++..... ..
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~------~~~~~~-~~---~~--------~~---~~~~~~~~~~-------------~~ 68 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG------GLQGDS-AH---EP--------EN---PEDTYERRIM-------------VD 68 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC------CEECCG-GG---TT--------TS---CTTEEEEEEE-------------ET
T ss_pred EEEEEEECCCCCCHHHHHHHHH------hccCCc-cC---CC--------Cc---ccceEEEEEE-------------EC
Confidence 4579999999999999999996 422110 00 00 00 1111100000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc---HHHHHHHHhc-----cCCeeEEEEeCccC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ-----SVSVGAVIVTKMDG 252 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~---~~~~~~~f~~-----~~~i~~vVltK~D~ 252 (494)
...+.+.|+||||.......+... ....+|.+++|+|.+.... .......+.. ..|+ .+|.||+|.
T Consensus 69 ~~~~~l~i~Dt~g~~~~~~~~~~~-----~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl 142 (195)
T 3cbq_A 69 KEEVTLVVYDIWEQGDAGGWLRDH-----CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV-ILVGNKSDL 142 (195)
T ss_dssp TEEEEEEEECCCCCSGGGHHHHHH-----HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCE-EEEEECTTC
T ss_pred CEEEEEEEEecCCCccchhhhHHH-----hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEeechhc
Confidence 124567889999986543222211 1225799999999875322 1122222221 2444 899999998
Q ss_pred CCCccchhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 253 HAKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 253 ~~~~g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
........... +.+ ..+. .+...+|+..|.| ++.+++.+.+.+
T Consensus 143 ~~~~~v~~~~~-------------~~~a~~~~--~~~~e~Sa~~~~~-v~~lf~~l~~~i 186 (195)
T 3cbq_A 143 ARSREVSLEEG-------------RHLAGTLS--CKHIETSAALHHN-TRELFEGAVRQI 186 (195)
T ss_dssp TTTCCSCHHHH-------------HHHHHHTT--CEEEEEBTTTTBS-HHHHHHHHHHHH
T ss_pred cccCCcCHHHH-------------HHHHHHhC--CEEEEEcCCCCCC-HHHHHHHHHHHH
Confidence 64321111111 111 0111 2345689999999 999999987765
No 197
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.78 E-value=4.3e-09 Score=98.79 Aligned_cols=156 Identities=15% Similarity=0.098 Sum_probs=83.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|.. .+.. . .+.+ ..++.+...... ..
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~------~~~~---~-~~~~-----------t~~~~~~~~~~~-------------~~ 71 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQ------GLFP---P-GQGA-----------TIGVDFMIKTVE-------------IN 71 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH------SSCC---T-TCCC-----------CCSEEEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHHh------CCCC---C-CCCC-----------ccceeEEEEEEE-------------EC
Confidence 35799999999999999999983 2110 0 0000 111111110000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH---HHHHHHHhc---cCCeeEEEEeCccCCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~---~~~~~~f~~---~~~i~~vVltK~D~~~ 254 (494)
...+.+.|+||||...... + .......+|.+++|+|++..... ......+.. .-.+..+|.||+|...
T Consensus 72 ~~~~~l~l~Dt~G~~~~~~-----~-~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 145 (201)
T 2ew1_A 72 GEKVKLQIWDTAGQERFRS-----I-TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE 145 (201)
T ss_dssp TEEEEEEEEEECCSGGGHH-----H-HGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CEEEEEEEEECCCcHHHHH-----H-HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 1235789999999753221 1 11223468999999999754321 112222221 1223488999999853
Q ss_pred CccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 255 ~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.......... .+.. ....+...+|++.|.| ++.+++.+.+.+
T Consensus 146 ~~~v~~~~~~-------------~~~~-~~~~~~~~~Sa~~g~g-v~~l~~~l~~~i 187 (201)
T 2ew1_A 146 RREVSQQRAE-------------EFSE-AQDMYYLETSAKESDN-VEKLFLDLACRL 187 (201)
T ss_dssp GCSSCHHHHH-------------HHHH-HHTCCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred ccccCHHHHH-------------HHHH-HcCCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 2111111110 0000 0112445689999999 999998887655
No 198
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.78 E-value=2.8e-09 Score=98.31 Aligned_cols=157 Identities=15% Similarity=0.173 Sum_probs=84.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+. ...+.+ + .+..+..... ..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~------~~~~----~~~~~~---------t--~~~~~~~~~~--------------~~ 67 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFS------KGEI----PTAYVP---------T--VFENFSHVMK--------------YK 67 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCC----CSSCCC---------C--SEEEEEEEEE--------------ET
T ss_pred eeEEEEECcCCCCHHHHHHHHh------cCCC----CCccCC---------e--eeeeeEEEEE--------------EC
Confidence 4579999999999999999998 3221 011111 0 0111110000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH----HHHHHhc---cCCeeEEEEeCccCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ---SVSVGAVIVTKMDGH 253 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~----~~~~f~~---~~~i~~vVltK~D~~ 253 (494)
...+.+.|+||||...... + .......+|.+++|+|++......+ ....+.. ..| ..+|.||+|..
T Consensus 68 ~~~~~~~i~Dt~G~~~~~~-----~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 140 (194)
T 3reg_A 68 NEEFILHLWDTAGQEEYDR-----L-RPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAK-TVLVGLKVDLR 140 (194)
T ss_dssp TEEEEEEEEEECCSGGGTT-----T-GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSE-EEEEEECGGGC
T ss_pred CEEEEEEEEECCCcHHHHH-----H-hHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhc
Confidence 1245679999999643221 0 0112336899999999986533222 1122222 234 48999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
........... ++.+.....+.+...+|+..|.| ++.+++.+.+.+
T Consensus 141 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i 186 (194)
T 3reg_A 141 KDGSDDVTKQE-----------GDDLCQKLGCVAYIEASSVAKIG-LNEVFEKSVDCI 186 (194)
T ss_dssp CTTTTCCCHHH-----------HHHHHHHHTCSCEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred cCCCCcccHHH-----------HHHHHHhcCCCEEEEeecCCCCC-HHHHHHHHHHHH
Confidence 42111110000 01110011122245689999999 999999987765
No 199
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.78 E-value=5.6e-08 Score=108.11 Aligned_cols=131 Identities=22% Similarity=0.174 Sum_probs=66.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
+...|+++|.+|+||||++++|........ +..-|+.. .+...+...+ ...++.+..... .+
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~-~~g~v~~~-~~~~d~~~~E---~~~giTi~~~~~-------------~~ 72 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIH-KIGEVHEG-AATMDFMEQE---RERGITITAAVT-------------TC 72 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC---------------------------------CCEE-------------EE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCc-ccceecCC-ceeccCchhh---hhcccccccceE-------------EE
Confidence 356799999999999999999985421100 00011100 0000000000 000111000000 01
Q ss_pred hccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH--HHHHHh-ccCCeeEEEEeCccCCCC
Q 011076 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD--QAQAFK-QSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~--~~~~f~-~~~~i~~vVltK~D~~~~ 255 (494)
...++.+.|+||||........... ...+|.+++|+|++.+..... ...... ..+++ .+|+||+|....
T Consensus 73 ~~~~~~i~liDTPG~~df~~~~~~~------l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~-ivviNKiD~~~~ 144 (691)
T 1dar_A 73 FWKDHRINIIDTPGHVDFTIEVERS------MRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR-IAFANKMDKTGA 144 (691)
T ss_dssp EETTEEEEEECCCSSTTCHHHHHHH------HHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCE-EEEEECTTSTTC
T ss_pred EECCeEEEEEECcCccchHHHHHHH------HHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCE-EEEEECCCcccC
Confidence 1136789999999986543322221 224799999999987654322 222222 23455 899999998643
No 200
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.77 E-value=1.2e-08 Score=109.02 Aligned_cols=163 Identities=21% Similarity=0.251 Sum_probs=88.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+|+||||++++|. +..... ..|.+.. + -....|. .+.+.. +.
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~------~~~~~~-~~d~~~~---e-~~~GiTi-~~~~~~-----------------~~ 69 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLT------EIASTS-AHDKLPE---S-QKRGITI-DIGFSA-----------------FK 69 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH------TTC--------------------------CCCE-----------------EE
T ss_pred CCEEEEECCCCChHHHHHHHHH------CCCccc-ccccccc---c-ccCccEE-ecceEE-----------------EE
Confidence 4579999999999999999998 433110 0111100 0 0000110 010000 01
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc--HHHHHHHHh-ccCCeeEEEEeCccCCCCcc
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFK-QSVSVGAVIVTKMDGHAKGG 257 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~--~~~~~~~f~-~~~~i~~vVltK~D~~~~~g 257 (494)
..++.+.|+||||... +...+ +..+..+|.+++|+|++.|.. ..+.+.... ..+++ .+|+||+|.....
T Consensus 70 ~~~~~i~iiDtPGh~~----~~~~~--~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~-IvviNK~Dl~~~~- 141 (482)
T 1wb1_A 70 LENYRITLVDAPGHAD----LIRAV--VSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPI-IVVITKSDNAGTE- 141 (482)
T ss_dssp ETTEEEEECCCSSHHH----HHHHH--HHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCB-CEEEECTTSSCHH-
T ss_pred ECCEEEEEEECCChHH----HHHHH--HHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCE-EEEEECCCcccch-
Confidence 1356899999999632 22222 233457899999999987532 222222222 23566 9999999986421
Q ss_pred chhHHHH-hcCCCeEEeccccccccc--cccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 258 GALSAVA-ATKSPVIFIGTGEHMDEF--EVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 258 ~~ls~~~-~~g~Pi~fi~~Ge~i~~l--~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.+.... ... +.+... ....+..++|++.|.| ++.|++.+.+.+
T Consensus 142 -~~~~~~~~l~---------~~l~~~~~~~~~~ii~vSA~~g~g-I~~L~~~L~~~i 187 (482)
T 1wb1_A 142 -EIKRTEMIMK---------SILQSTHNLKNSSIIPISAKTGFG-VDELKNLIITTL 187 (482)
T ss_dssp -HHHHHHHHHH---------HHHHHSSSGGGCCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred -hHHHHHHHHH---------HHHhhhcccccceEEEEECcCCCC-HHHHHHHHHHhh
Confidence 111110 000 000000 0124567789999999 999999998865
No 201
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.77 E-value=9.5e-09 Score=94.63 Aligned_cols=151 Identities=14% Similarity=0.067 Sum_probs=83.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
+...|+|+|.+||||||+++++.. .+.. +.+.+. . ..+. ..+.+ .
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~------~~~~----~~~~~t-~---~~~~--~~~~~----~--------------- 63 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLT------GTYV----QEESPE-G---GRFK--KEIVV----D--------------- 63 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH------SSCC----CCCCTT-C---EEEE--EEEEE----T---------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc------CCCC----CCcCCC-c---ceEE--EEEEE----C---------------
Confidence 346799999999999999999882 2211 011110 0 0000 00100 0
Q ss_pred hccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhc-----cCCeeEEEEeCcc
Q 011076 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ-----SVSVGAVIVTKMD 251 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~-----~~~i~~vVltK~D 251 (494)
...+.+.|+||||..... ....+|.+++|+|.+......+ ....+.. ..++ .+|.||+|
T Consensus 64 -~~~~~l~i~Dt~G~~~~~-----------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~D 130 (184)
T 3ihw_A 64 -GQSYLLLIRDEGGPPELQ-----------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPM-VLVGTQDA 130 (184)
T ss_dssp -TEEEEEEEEECSSSCCHH-----------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCE-EEEEECTT
T ss_pred -CEEEEEEEEECCCChhhh-----------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECcc
Confidence 123567889999986432 1124799999999986432221 2222222 2344 89999999
Q ss_pred CCCCccchhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 252 GHAKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 252 ~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.........+... ++.+ ..+ ...+...+|++.|.| ++.+++.+.+.+
T Consensus 131 l~~~~~~~v~~~~-----------~~~~~~~~-~~~~~~e~Sa~~~~g-v~~lf~~l~~~i 178 (184)
T 3ihw_A 131 ISAANPRVIDDSR-----------ARKLSTDL-KRCTYYETCATYGLN-VERVFQDVAQKV 178 (184)
T ss_dssp CBTTBCCCSCHHH-----------HHHHHHHT-TTCEEEEEBTTTTBT-HHHHHHHHHHHH
T ss_pred cccccccccCHHH-----------HHHHHHHc-CCCeEEEecCCCCCC-HHHHHHHHHHHH
Confidence 8422111111100 0111 111 123445689999999 999999887654
No 202
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.76 E-value=1.8e-09 Score=116.47 Aligned_cols=159 Identities=18% Similarity=0.149 Sum_probs=89.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
+.+|+++|.+|+||||+++.|...-...... ...+.. +.++....
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~------------------~giT~~-i~~~~v~~---------------- 48 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEA------------------GGITQH-IGAFLVSL---------------- 48 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSS------------------CCBCCC-TTSCCBCS----------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccC------------------CceeEE-EeEEEEEe----------------
Confidence 4579999999999999999998432111110 001111 10011000
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH--HHHHHHHhc-cCCeeEEEEeCccCCCCc-
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQ-SVSVGAVIVTKMDGHAKG- 256 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~--~~~~~~f~~-~~~i~~vVltK~D~~~~~- 256 (494)
..+..+.|+||||........ ...+..+|.+++|+|++.+... .+.+..... .+|+ .+|+||+|.....
T Consensus 49 ~~g~~i~~iDTPGhe~f~~~~------~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPi-IVViNKiDl~~~~~ 121 (537)
T 3izy_P 49 PSGEKITFLDTPGHAAFSAMR------ARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPI-VLAINKCDKAEADP 121 (537)
T ss_dssp SCSSCCBCEECSSSCCTTTSB------BSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCE-EECCBSGGGTTTSC
T ss_pred CCCCEEEEEECCChHHHHHHH------HHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcE-EEEEecccccccch
Confidence 024567899999975322100 0112357999999999876432 223333322 3454 8999999985321
Q ss_pred cchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 257 g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
..........+ ....++....+..++|++.|.| ++.|++.+...+
T Consensus 122 ~~v~~~l~~~~---------~~~e~~~~~~~iv~vSAktG~G-I~eLle~I~~l~ 166 (537)
T 3izy_P 122 EKVKKELLAYD---------VVCEDYGGDVQAVHVSALTGEN-MMALAEATIALA 166 (537)
T ss_dssp CSSSSHHHHTT---------SCCCCSSSSEEECCCCSSSSCS-SHHHHHHHHHHH
T ss_pred HHHHHHHHhhh---------hhHHhcCCCceEEEEECCCCCC-chhHHHHHHHhh
Confidence 11111111111 1112222223567899999999 999999998764
No 203
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.76 E-value=1.8e-08 Score=98.52 Aligned_cols=119 Identities=16% Similarity=0.199 Sum_probs=66.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+++.++. +.+ ++........ .
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~------~~~~~~~~~--~~~---------~t~~~~~~~~------------------~ 80 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLI------GEQVVRVSP--FQA---------EGLRPVMVSR------------------T 80 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH------TSCCSCCCS--SCC----------CCCCEEEEE------------------E
T ss_pred CcEEEEECCCCCCHHHHHHHHh------CCCCcccCC--CCC---------cceeeEEEEE------------------E
Confidence 4579999999999999999999 665543332 111 1111111000 0
Q ss_pred ccCCcEEEEeCCCCCchh---HHHHHHHHHHHHhcCCCEEEEEecCCCc-ccH--HHHHHHHhcc----C-CeeEEEEeC
Q 011076 181 KENCDLIIVDTSGRHKQE---AALFEEMRQVSEATNPDLVIFVMDSSIG-QAA--FDQAQAFKQS----V-SVGAVIVTK 249 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~---~~l~~el~~i~~~~~~d~vllVvDa~~g-~~~--~~~~~~f~~~----~-~i~~vVltK 249 (494)
..+..+.|+||||..... +...+.+........+|.+++|+|.... ... ......+.+. . .+..+|+||
T Consensus 81 ~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK 160 (262)
T 3def_A 81 MGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTH 160 (262)
T ss_dssp ETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred ECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeC
Confidence 125688999999985432 2333333333222357889999665432 221 1233333322 1 244899999
Q ss_pred ccCCC
Q 011076 250 MDGHA 254 (494)
Q Consensus 250 ~D~~~ 254 (494)
+|...
T Consensus 161 ~Dl~~ 165 (262)
T 3def_A 161 AQFSP 165 (262)
T ss_dssp TTCCC
T ss_pred cccCC
Confidence 99853
No 204
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.75 E-value=3.4e-09 Score=96.25 Aligned_cols=154 Identities=12% Similarity=0.083 Sum_probs=82.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+. ...+.+ + .+..+...... .
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~------~~~~----~~~~~~---------t--~~~~~~~~~~~--------------~ 50 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFV------EGQF----VDSYDP---------T--IENTFTKLITV--------------N 50 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------HSSC----CSCCCT---------T--CCEEEEEEEEE--------------T
T ss_pred eEEEEEECcCCCCHHHHHHHHH------cCCC----CCCCCC---------C--ccccEEEEEEE--------------C
Confidence 4579999999999999999998 2221 011111 0 01111110000 0
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhc-----cCCeeEEEEeCccC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ-----SVSVGAVIVTKMDG 252 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~-----~~~i~~vVltK~D~ 252 (494)
...+.+.|+||||...... + .......+|.+++|+|.+....... ....+.. ..|+ .+|+||+|.
T Consensus 51 ~~~~~~~l~Dt~G~~~~~~-~-----~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl 123 (181)
T 3t5g_A 51 GQEYHLQLVDTAGQDEYSI-F-----PQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKDL 123 (181)
T ss_dssp TEEEEEEEEECCCCCTTCC-C-----CGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCE-EEEEECTTC
T ss_pred CEEEEEEEEeCCCchhhhH-H-----HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccc
Confidence 1236778999999754210 0 0011235899999999975432211 1112211 2344 899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 253 ~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
............ +....+ -.+...+|+..|.| ++.+++.+.+.+
T Consensus 124 ~~~~~~~~~~~~------------~~~~~~--~~~~~~~Sa~~~~~-v~~l~~~l~~~~ 167 (181)
T 3t5g_A 124 HMERVISYEEGK------------ALAESW--NAAFLESSAKENQT-AVDVFRRIILEA 167 (181)
T ss_dssp TTTCCSCHHHHH------------HHHHHT--TCEEEECCTTSHHH-HHHHHHHHHHHH
T ss_pred hhcceecHHHHH------------HHHHHh--CCcEEEEecCCCCC-HHHHHHHHHHHH
Confidence 533211111110 000011 11345689999999 999998887765
No 205
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.75 E-value=9.8e-09 Score=92.89 Aligned_cols=151 Identities=11% Similarity=0.054 Sum_probs=81.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+.. .+.|. .+..+..... ..
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~------~~~~~-----~~~~t-----------~~~~~~~~~~--------------~~ 50 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFL------TGSYQ-----VLEKT-----------ESEQYKKEML--------------VD 50 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHH------HSCCC-----CCSSC-----------SSSEEEEEEE--------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHH------hCCCC-----CcCCC-----------cceeEEEEEE--------------EC
Confidence 4569999999999999999998 32221 11110 0000000000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHH------HHHHhc---cCCeeEEEEeCcc
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ------AQAFKQ---SVSVGAVIVTKMD 251 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~------~~~f~~---~~~i~~vVltK~D 251 (494)
...+.+.|+||||.... . ....+|.+++|+|.+......+. +..+.. .-.+..+|.||+|
T Consensus 51 ~~~~~l~i~Dt~G~~~~--~---------~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~D 119 (178)
T 2iwr_A 51 GQTHLVLIREEAGAPDA--K---------FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 119 (178)
T ss_dssp TEEEEEEEEECSSSCCH--H---------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTT
T ss_pred CEEEEEEEEECCCCchh--H---------HHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 12356789999998641 1 11247999999999864322111 222222 1123489999999
Q ss_pred CCCCccchhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 252 GHAKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 252 ~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.........+... ++.+ ..+ ...+...+|+..|.| ++.+++.+.+.+
T Consensus 120 l~~~~~~~v~~~~-----------~~~~~~~~-~~~~~~~~Sa~~~~~-i~~lf~~l~~~~ 167 (178)
T 2iwr_A 120 ISASSPRVVGDAR-----------ARALXADM-KRCSYYETXATYGLN-VDRVFQEVAQKV 167 (178)
T ss_dssp CBTTBCCCSCHHH-----------HHHHHHHH-SSEEEEEEBTTTTBT-HHHHHHHHHHHH
T ss_pred ccccccCcCCHHH-----------HHHHHHhh-cCCeEEEEeccccCC-HHHHHHHHHHHH
Confidence 8321100110000 0000 011 112445689999999 999999887654
No 206
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.75 E-value=2.5e-08 Score=105.79 Aligned_cols=96 Identities=19% Similarity=0.281 Sum_probs=55.0
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc---------cHHHHHHHHh-ccCCeeEEEEeCcc
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---------AAFDQAQAFK-QSVSVGAVIVTKMD 251 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~---------~~~~~~~~f~-~~~~i~~vVltK~D 251 (494)
.++.+.|+||||..... ..+ +..+..+|.+++|+|++.+. ...+.+.... ..++...+|+||+|
T Consensus 83 ~~~~~~iiDtPGh~~f~----~~~--~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~D 156 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFI----KNM--ITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMD 156 (458)
T ss_dssp SSEEEEEEECCCCTTHH----HHH--HHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGG
T ss_pred CCceEEEEECCCcHHHH----HHH--HhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccc
Confidence 35789999999965322 221 23355799999999998652 1222222211 22443478999999
Q ss_pred CCCCccch--------hHHHHhcC-----CCeEEec--ccccccccc
Q 011076 252 GHAKGGGA--------LSAVAATK-----SPVIFIG--TGEHMDEFE 283 (494)
Q Consensus 252 ~~~~~g~~--------ls~~~~~g-----~Pi~fi~--~Ge~i~~l~ 283 (494)
........ ...+...+ .|+.+++ +|++++++.
T Consensus 157 l~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~ 203 (458)
T 1f60_A 157 SVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT 203 (458)
T ss_dssp GGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccc
Confidence 86321111 11222233 5777777 677775543
No 207
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.75 E-value=2.4e-08 Score=103.05 Aligned_cols=155 Identities=19% Similarity=0.226 Sum_probs=86.3
Q ss_pred CCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHH
Q 011076 94 FTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAV 173 (494)
Q Consensus 94 ~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~ 173 (494)
+.+.....+.|+++|.+|+||||++++|. ++| ++.| +.++...
T Consensus 14 ~~~~~~~m~~i~iiG~~d~GKSTL~~~L~----~~g-----iTi~------------------~~~~~~~---------- 56 (370)
T 2elf_A 14 LVPRGSHMANVAIIGTEKSGRTSLAANLG----KKG-----TSSD------------------ITMYNND---------- 56 (370)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHTTS----EEE-----EESS------------------SEEEEEC----------
T ss_pred cccccccCCEEEEECCCCCCHHHHHHHHH----hCC-----EEEE------------------eeEEEEe----------
Confidence 33333333379999999999999999997 111 1111 1111101
Q ss_pred HHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH--HHHHHHHh-ccCCeeEEEEe-C
Q 011076 174 EGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFK-QSVSVGAVIVT-K 249 (494)
Q Consensus 174 ~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~--~~~~~~f~-~~~~i~~vVlt-K 249 (494)
..++.+.|+||||.......+ +..+..+|.+++|+| ..+... .+...... ..++...+++| |
T Consensus 57 -------~~~~~i~iiDtPGh~~f~~~~------~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK 122 (370)
T 2elf_A 57 -------KEGRNMVFVDAHSYPKTLKSL------ITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRS 122 (370)
T ss_dssp -------SSSSEEEEEECTTTTTCHHHH------HHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCG
T ss_pred -------cCCeEEEEEECCChHHHHHHH------HHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEec
Confidence 125678999999986543222 122357899999999 765432 22222222 22444488999 9
Q ss_pred ccCCCCccchhHH-HHhcCCCeEEecccccccccc-ccCccch--hhccc---CCCCchHHHHHHHHhCC
Q 011076 250 MDGHAKGGGALSA-VAATKSPVIFIGTGEHMDEFE-VFDVKPF--VSRLL---GMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 250 ~D~~~~~g~~ls~-~~~~g~Pi~fi~~Ge~i~~l~-~f~p~~~--vs~~~---G~Gdi~~L~e~i~~~~~ 312 (494)
+|. .. ..... ..... +.+.... ...|..+ +|++. |.| ++.|++.+.+.++
T Consensus 123 ~Dl-~~--~~~~~~~~~i~---------~~l~~~~~~~~~ii~~~~SA~~~~~g~g-i~~L~~~l~~~~~ 179 (370)
T 2elf_A 123 DST-HM--HAIDELKAKLK---------VITSGTVLQDWECISLNTNKSAKNPFEG-VDELKARINEVAE 179 (370)
T ss_dssp GGS-CH--HHHHHHHHHHH---------HHTTTSTTTTCEEEECCCCTTSSSTTTT-HHHHHHHHHHHHH
T ss_pred cCC-CH--HHHHHHHHHHH---------HHHHhcCCCceEEEecccccccCcCCCC-HHHHHHHHHhhcc
Confidence 998 32 11111 10000 0111111 1235667 89999 999 9999998887763
No 208
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.73 E-value=3.4e-08 Score=107.99 Aligned_cols=108 Identities=16% Similarity=0.143 Sum_probs=67.5
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhccCCeeEEEEeCccCCCCc-cc
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQSVSVGAVIVTKMDGHAKG-GG 258 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~~~~i~~vVltK~D~~~~~-g~ 258 (494)
.+.+.|+||||.......... . ...+|.+++|+|++.+..... ........+++ .+|+||+|..... ..
T Consensus 70 ~~~l~liDTPGh~dF~~ev~~----~--l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipi-IvViNKiDl~~a~~~~ 142 (599)
T 3cb4_D 70 TYQLNFIDTPGHVDFSYEVSR----S--LAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEV-VPVLNKIDLPAADPER 142 (599)
T ss_dssp EEEEEEEECCCCGGGHHHHHH----H--HHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEE-EEEEECTTSTTCCHHH
T ss_pred eEEEEEEECCCchHHHHHHHH----H--HHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEeeeccCcccccHHH
Confidence 467889999998654433222 1 224699999999987643322 22222334554 8999999986432 11
Q ss_pred hhH-HHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCCC
Q 011076 259 ALS-AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (494)
Q Consensus 259 ~ls-~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~~ 313 (494)
... +....+. ...+..++|++.|.| ++.|++.+.+.++.
T Consensus 143 v~~ei~~~lg~---------------~~~~vi~vSAktg~G-I~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 143 VAEEIEDIVGI---------------DATDAVRCSAKTGVG-VQDVLERLVRDIPP 182 (599)
T ss_dssp HHHHHHHHTCC---------------CCTTCEEECTTTCTT-HHHHHHHHHHHSCC
T ss_pred HHHHHHHHhCC---------------CcceEEEeecccCCC-chhHHHHHhhcCCC
Confidence 111 1111111 112457799999999 99999999998863
No 209
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.71 E-value=6.2e-08 Score=104.97 Aligned_cols=123 Identities=20% Similarity=0.183 Sum_probs=70.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH---hc-----CCc--eEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ---KK-----GWK--PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVR 170 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~---~~-----g~k--VaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~ 170 (494)
.+.|+|+|..++|||||+-+|..+-. +. |.. -.+.|.+ ..-...+|.+.....
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~-----------~~EreRGITI~s~~~------ 93 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWM-----------AMERERGISVTTSVM------ 93 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC-------------------------------CTTTEE------
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCCh-----------HHHHHCCCcEeeceE------
Confidence 46799999999999999999975421 11 110 0111211 111112232211100
Q ss_pred HHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH--HHH-HHhccCCeeEEEE
Q 011076 171 IAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD--QAQ-AFKQSVSVGAVIV 247 (494)
Q Consensus 171 i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~--~~~-~f~~~~~i~~vVl 247 (494)
.+..+++.+-||||||......+....| ...|.+++|+||..|..... ..+ +....+|+ .+++
T Consensus 94 -------~~~~~~~~iNlIDTPGHvDF~~Ev~raL------~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~-i~fI 159 (548)
T 3vqt_A 94 -------QFPYRDRVVNLLDTPGHQDFSEDTYRVL------TAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPV-MTFV 159 (548)
T ss_dssp -------EEEETTEEEEEECCCCGGGCSHHHHHHH------HSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCE-EEEE
T ss_pred -------EEEECCEEEEEEeCCCcHHHHHHHHHHH------HhcCceEEEeecCCCcccccHHHHHHHHHhCCce-EEEE
Confidence 1122478899999999987665544333 25799999999998865443 222 22234665 8999
Q ss_pred eCccCCC
Q 011076 248 TKMDGHA 254 (494)
Q Consensus 248 tK~D~~~ 254 (494)
||+|...
T Consensus 160 NK~Dr~~ 166 (548)
T 3vqt_A 160 NKMDREA 166 (548)
T ss_dssp ECTTSCC
T ss_pred ecccchh
Confidence 9999743
No 210
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.18 E-value=1.4e-09 Score=101.26 Aligned_cols=166 Identities=14% Similarity=0.087 Sum_probs=82.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+. . ..+.+ +...... ... ...
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~------~~~~--~--~~~~~---------t~~~~~~--~~~--------------~~~ 74 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYT------TNAF--P--GEYIP---------TVFDNYS--ANV--------------MVD 74 (204)
Confidence 4569999999999999999987 2211 0 00111 0000000 000 001
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH----HHHHHhc---cCCeeEEEEeCccCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ---SVSVGAVIVTKMDGH 253 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~----~~~~f~~---~~~i~~vVltK~D~~ 253 (494)
...+.+.|+||||...... +. ......+|.+++|+|++......+ ....+.. ..|+ .+|+||+|..
T Consensus 75 ~~~~~l~i~Dt~G~~~~~~-----~~-~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~pi-ilv~NK~Dl~ 147 (204)
T 3th5_A 75 GKPVNLGLWDTAGQEDYDR-----LR-PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTKLDLR 147 (204)
Confidence 1245667999999643221 10 011235788999999875432211 1122222 2344 8999999986
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
..... ................++.+..-..+.+...+|+..|.| ++.+++.+.+.
T Consensus 148 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~g-i~~l~~~l~~~ 202 (204)
T 3th5_A 148 DDKDT-IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG-LKTVFDEAIRA 202 (204)
Confidence 43211 110000000000000111111111122456789999999 99888887653
No 211
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.71 E-value=2.2e-08 Score=104.09 Aligned_cols=126 Identities=17% Similarity=0.183 Sum_probs=70.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcch-hHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG-AFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~-a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
..|+++|.+|+||||++++|.....+.|... |... ..+.+.. ....++.+..... .+.
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~-------~~~~~~~d~~~~-e~~~giTi~~~~~-------------~~~ 62 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAK-------FKKYEEIDNAPE-ERARGITINAAHV-------------EYS 62 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBC-------CCCHHHHHSCCE-EEETTEEEECEEE-------------EEE
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccc-------cchhhhhhcCHH-HHhcCcEEEeeeE-------------Eec
Confidence 4689999999999999999997766655321 1100 0111100 0011221110000 011
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH--HHHHHHHhc-cCCeeEEEEeCccCCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~--~~~~~~f~~-~~~i~~vVltK~D~~~ 254 (494)
..++.+.|+||||... +...+ ...+..+|.+++|+|++.+... .+....... .++...+|+||+|...
T Consensus 63 ~~~~~~~iiDtpG~~~----f~~~~--~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 63 TAARHYAHTDCPGHAD----YVKNM--ITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp CSSCEEEEEECSSHHH----HHHHH--HHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS
T ss_pred cCCeEEEEEECCChHH----HHHHH--HhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCC
Confidence 1357899999999743 22222 2334578999999999876432 222222222 2443378999999864
No 212
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.71 E-value=6.4e-10 Score=103.37 Aligned_cols=153 Identities=14% Similarity=0.025 Sum_probs=78.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+|+|.+||||||+++.|. +.+.. ... ....+.......+. ..
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~------~~~~~--------~~~---~~~~~~~~~~~~~~-~~---------------- 78 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFA------DDTYT--------ESY---ISTIGVDFKIRTIE-LD---------------- 78 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSB------CCCCC--------CHH---HHHHCCSEEEEEEE-ET----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHh------cCCCC--------CCc---CCcccceEEEEEEE-EC----------------
Confidence 4679999999999999999987 43221 000 00011101110010 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHhcc---CCeeEEEEeCccCCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQS---VSVGAVIVTKMDGHA 254 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~~~---~~i~~vVltK~D~~~ 254 (494)
...+.+.|+||||........ ......+|.+++|+|++....... ....+... -.+..+|+||+|...
T Consensus 79 ~~~~~~~i~Dt~G~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 152 (199)
T 3l0i_B 79 GKTIKLQIWDTAGQERFRTIT------SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 152 (199)
T ss_dssp TEEEEEEEECCTTCTTCCCCS------CC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC-
T ss_pred CEEEEEEEEECCCcHhHHHHH------HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCc
Confidence 123678999999964321100 011236899999999986543221 22222221 123488999999854
Q ss_pred Ccc----chhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 255 KGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 255 ~~g----~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
... .+..... .+ ..+...+|+..|.| ++.+++.+.+.+.
T Consensus 153 ~~~v~~~~~~~~~~----------------~~--~~~~~~vSA~~g~g-v~~l~~~l~~~l~ 195 (199)
T 3l0i_B 153 KKVVDYTTAKEFAD----------------SL--GIPFLETSAKNATN-VEQSFMTMAAEIK 195 (199)
T ss_dssp -CCCCSCC-CHHHH----------------TT--TCCBCCCCC---HH-HHHHHHHHTTTTT
T ss_pred cccCCHHHHHHHHH----------------Hc--CCeEEEEECCCCCC-HHHHHHHHHHHHH
Confidence 311 1111111 11 12445689999999 9999999877663
No 213
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.71 E-value=6.6e-08 Score=98.97 Aligned_cols=80 Identities=18% Similarity=0.277 Sum_probs=47.0
Q ss_pred CCcEEEEeCCCCCch-----hHHHHHHHHHHH--HhcCCCEEEEEecCCCc----ccHHHHHHHHhccCCeeEEEEeCcc
Q 011076 183 NCDLIIVDTSGRHKQ-----EAALFEEMRQVS--EATNPDLVIFVMDSSIG----QAAFDQAQAFKQSVSVGAVIVTKMD 251 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~-----~~~l~~el~~i~--~~~~~d~vllVvDa~~g----~~~~~~~~~f~~~~~i~~vVltK~D 251 (494)
..++.||||||.... .......+..+. ....++.+++|+|+... ++....+..+...-....+|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 467999999998653 112222332222 24479989999986532 2223344444433234699999999
Q ss_pred CCCCccchhHH
Q 011076 252 GHAKGGGALSA 262 (494)
Q Consensus 252 ~~~~~g~~ls~ 262 (494)
...........
T Consensus 215 l~~~~~~~~~~ 225 (360)
T 3t34_A 215 LMDKGTDAVEI 225 (360)
T ss_dssp GCCTTCCSHHH
T ss_pred cCCCcccHHHH
Confidence 87655444443
No 214
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.71 E-value=1.3e-09 Score=119.22 Aligned_cols=67 Identities=22% Similarity=0.282 Sum_probs=32.2
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc---------cHHHHHHHHh-ccCCeeEEEEeCcc
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---------AAFDQAQAFK-QSVSVGAVIVTKMD 251 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~---------~~~~~~~~f~-~~~~i~~vVltK~D 251 (494)
.++.+.|+||||........ +..+..+|.+++|+|++.+. .....+.... ..++..++|+||+|
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~------~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiD 326 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGM------IAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLD 326 (592)
T ss_dssp ------CCEEESSSEEEEEC------CC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGG
T ss_pred CCeEEEEEECCChHHHHHHH------HHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccc
Confidence 46788999999975432111 11123579999999998531 2223332222 23443478999999
Q ss_pred CCC
Q 011076 252 GHA 254 (494)
Q Consensus 252 ~~~ 254 (494)
...
T Consensus 327 l~~ 329 (592)
T 3mca_A 327 LMS 329 (592)
T ss_dssp GGT
T ss_pred ccc
Confidence 864
No 215
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.69 E-value=9.6e-09 Score=94.63 Aligned_cols=150 Identities=12% Similarity=0.070 Sum_probs=81.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
+...|+++|.+||||||+++.|. +.+.. +.+.+ + .+..+..... .
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~------~~~~~----~~~~~---------t--~~~~~~~~~~--------------~ 64 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFL------TKRFI----SEYDP---------N--LEDTYSSEET--------------V 64 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH------HSSCC----SCCCT---------T--CCEEEEEEEE--------------E
T ss_pred ceEEEEEECCCCCcHHHHHHHHH------hCCCC----cccCC---------C--ccceeeEEEE--------------E
Confidence 34679999999999999999998 32210 11111 0 0111100000 0
Q ss_pred hccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH---HHHHHh-------ccCCeeEEEEeC
Q 011076 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK-------QSVSVGAVIVTK 249 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~---~~~~f~-------~~~~i~~vVltK 249 (494)
....+.+.|+||||...... + . .....+|.+++|.|.+......+ ....+. ...++ .+|.||
T Consensus 65 ~~~~~~l~i~Dt~G~~~~~~-~----~--~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pi-ilv~nK 136 (187)
T 3c5c_A 65 DHQPVHLRVMDTADLDTPRN-C----E--RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPA-LLLGNK 136 (187)
T ss_dssp TTEEEEEEEEECCC---CCC-T----H--HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCE-EEEEEC
T ss_pred CCEEEEEEEEECCCCCcchh-H----H--HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCE-EEEEEC
Confidence 01246788999999753221 1 1 12346899999999975432111 112221 23454 899999
Q ss_pred ccCCCCccc----hhHHHHhcCCCeEEeccccccccccccCccchhhc-ccCCCCchHHHHHHHHhC
Q 011076 250 MDGHAKGGG----ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSR-LLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 250 ~D~~~~~g~----~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~-~~G~Gdi~~L~e~i~~~~ 311 (494)
+|....... +...+. .+. .+...+|+ ..|.| ++.+++.+.+.+
T Consensus 137 ~Dl~~~~~v~~~~~~~~~~----------------~~~--~~~~e~Sa~~~g~g-v~~lf~~l~~~i 184 (187)
T 3c5c_A 137 LDMAQYRQVTKAEGVALAG----------------RFG--CLFFEVSACLDFEH-VQHVFHEAVREA 184 (187)
T ss_dssp GGGGGGCSSCHHHHHHHHH----------------HHT--CEEEECCSSSCSHH-HHHHHHHHHHHH
T ss_pred cchhhcCccCHHHHHHHHH----------------HcC--CcEEEEeecCcccc-HHHHHHHHHHHH
Confidence 998432111 111111 111 23456888 88988 999988886653
No 216
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.69 E-value=7.8e-08 Score=100.25 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=59.9
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc---cHHHHHHHHhc-cCCeeEEEEeCccCCCCcc--
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---AAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGG-- 257 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~---~~~~~~~~f~~-~~~i~~vVltK~D~~~~~g-- 257 (494)
+.+.|+||||... +...+ +..+..+|.+++|+|++.+. ...+.+..+.. ..+...+|+||+|......
T Consensus 81 ~~i~iiDtPGh~~----f~~~~--~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~ 154 (408)
T 1s0u_A 81 RRVSFVDSPGHET----LMATM--LSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAE 154 (408)
T ss_dssp EEEEEEECSSHHH----HHHHH--HTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTT
T ss_pred cEEEEEECCCHHH----HHHHH--HHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHH
Confidence 5789999999532 22222 22344689999999998652 22233333222 2333489999999864321
Q ss_pred chhHHHHhcCCCeEEeccccccccc-cccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 258 GALSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 258 ~~ls~~~~~g~Pi~fi~~Ge~i~~l-~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
....... +.+... ....|..++|++.|.| ++.|++.+.+.++
T Consensus 155 ~~~~~i~------------~~l~~~~~~~~~~i~vSA~~g~g-i~~L~~~l~~~i~ 197 (408)
T 1s0u_A 155 ENYEQIK------------EFVKGTIAENAPIIPISAHHEAN-IDVLLKAIQDFIP 197 (408)
T ss_dssp THHHHHH------------HHHTTSTTTTCCEEEC------C-HHHHHHHHHHHSC
T ss_pred HHHHHHH------------HHHhhcCCCCCeEEEeeCCCCCC-HHHHHHHHHHhCC
Confidence 1111111 001110 1124567799999999 9999999998775
No 217
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.68 E-value=1e-08 Score=95.86 Aligned_cols=163 Identities=16% Similarity=0.116 Sum_probs=86.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+. .+.+.+. ............
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~------~~~~----~~~~~~t---------~~~~~~~~~~~~---------------- 53 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYT------SNKF----PTDYIPT---------VFDNFSANVAVD---------------- 53 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------HSCC----CSSCCCS---------SCCCEEEEEECS----------------
T ss_pred eEEEEEECCCCCCHHHHHHHHh------cCCC----CccCCCc---------cceeEEEEEEEC----------------
Confidence 4569999999999999999998 2221 1111110 001110000000
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH----HHHHHhc---cCCeeEEEEeCccCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ---SVSVGAVIVTKMDGH 253 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~----~~~~f~~---~~~i~~vVltK~D~~ 253 (494)
...+.+.|+||||...... + . ......+|.+++|+|.+......+ ....+.. ..|+ .+|.||+|..
T Consensus 54 ~~~~~~~i~Dt~G~~~~~~-~----~-~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~ 126 (212)
T 2j0v_A 54 GQIVNLGLWDTAGQEDYSR-L----R-PLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPI-VLVGTKLDLR 126 (212)
T ss_dssp SCEEEEEEECCCCCCCCCC--------CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCE-EEEEECHHHH
T ss_pred CEEEEEEEEECCCcHHHHH-H----H-HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEeCHHhh
Confidence 1236789999999854321 1 0 112346899999999976432211 1222222 3455 8999999975
Q ss_pred CCccchhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
..... ......++. ...++.+ ..+ .+.+...+|+..|.| ++.+++.+.+.+.
T Consensus 127 ~~~~~----~~~~~~~v~-~~~~~~~~~~~-~~~~~~~~Sa~~g~g-i~~l~~~l~~~~~ 179 (212)
T 2j0v_A 127 DDKGY----LADHTNVIT-STQGEELRKQI-GAAAYIECSSKTQQN-VKAVFDTAIKVVL 179 (212)
T ss_dssp TCHHH----HHTCSSCCC-HHHHHHHHHHH-TCSEEEECCTTTCTT-HHHHHHHHHHHHH
T ss_pred hCccc----cccccCCCC-HHHHHHHHHHc-CCceEEEccCCCCCC-HHHHHHHHHHHHh
Confidence 43210 000000000 0000111 111 122456789999999 9999999887663
No 218
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.68 E-value=4.1e-08 Score=102.37 Aligned_cols=110 Identities=15% Similarity=0.167 Sum_probs=65.8
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc---cHHHHHHHHhc-cCCeeEEEEeCccCCCCcc--
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---AAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGG-- 257 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~---~~~~~~~~f~~-~~~i~~vVltK~D~~~~~g-- 257 (494)
+.+.|+||||... +...+ +..+..+|.+++|+|++.+. ...+.+..+.. ..+...+|+||+|......
T Consensus 83 ~~i~iiDtPGh~~----f~~~~--~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~ 156 (410)
T 1kk1_A 83 RRVSFIDAPGHEA----LMTTM--LAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKAL 156 (410)
T ss_dssp EEEEEEECSSHHH----HHHHH--HHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHH
T ss_pred cEEEEEECCChHH----HHHHH--HhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHH
Confidence 5689999999632 22222 23344689999999998652 22233322222 2333478899999864321
Q ss_pred chhHHHHhcCCCeEEecccccccc-ccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 258 GALSAVAATKSPVIFIGTGEHMDE-FEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 258 ~~ls~~~~~g~Pi~fi~~Ge~i~~-l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
....... +.+.. .....|..++|++.|.| ++.|++.+.+.++
T Consensus 157 ~~~~~i~------------~~l~~~~~~~~~~i~vSA~~g~g-i~~L~~~l~~~~~ 199 (410)
T 1kk1_A 157 ENYRQIK------------EFIEGTVAENAPIIPISALHGAN-IDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHH------------HHHTTSTTTTCCEEECBTTTTBS-HHHHHHHHHHHSC
T ss_pred HHHHHHH------------HHHHhcCcCCCeEEEeeCCCCCC-HHHHHHHHHHhCC
Confidence 0111111 00111 01234667899999999 9999999998775
No 219
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.68 E-value=2.5e-08 Score=91.71 Aligned_cols=165 Identities=15% Similarity=0.112 Sum_probs=85.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|.. .+. .+.+.+ +............
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~------~~~----~~~~~~---------t~~~~~~~~~~~~---------------- 62 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAN------DAF----PEEYVP---------TVFDHYAVSVTVG---------------- 62 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH------SSC----CCSCCC---------SSCCCEEEEEESS----------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhc------CCC----CCCCCC---------cccceeEEEEEEC----------------
Confidence 35799999999999999999983 211 011111 0001110000000
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH----HHHHHhc---cCCeeEEEEeCccCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ---SVSVGAVIVTKMDGH 253 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~----~~~~f~~---~~~i~~vVltK~D~~ 253 (494)
...+.+.|+||||...... + .......+|.+++|+|++....... ....+.. ..|+ .+|.||+|..
T Consensus 63 ~~~~~~~i~D~~G~~~~~~-----~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~ 135 (194)
T 2atx_A 63 GKQYLLGLYDTAGQEDYDR-----L-RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPF-LLIGTQIDLR 135 (194)
T ss_dssp SCEEEEEEECCCCSSSSTT-----T-GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCE-EEEEECTTST
T ss_pred CEEEEEEEEECCCCcchhH-----H-HHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEEChhhc
Confidence 0136788999999754321 0 0112336899999999976432111 1222222 3454 8999999986
Q ss_pred CCccchhHHHHhcC-CCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 254 AKGGGALSAVAATK-SPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 254 ~~~g~~ls~~~~~g-~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
.... ......... ..+. ...++.+..-..+.+...+|+..|.| ++++++.+.+.
T Consensus 136 ~~~~-~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~ 190 (194)
T 2atx_A 136 DDPK-TLARLNDMKEKPIC-VEQGQKLAKEIGACCYVECSALTQKG-LKTVFDEAIIA 190 (194)
T ss_dssp TCHH-HHHHHTTTTCCCCC-HHHHHHHHHHHTCSCEEECCTTTCTT-HHHHHHHHHHH
T ss_pred cccc-chhhcccccCcccC-HHHHHHHHHHcCCcEEEEeeCCCCCC-HHHHHHHHHHH
Confidence 5321 000000000 0000 00001110001122456689999999 99999888664
No 220
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.66 E-value=2.6e-07 Score=102.97 Aligned_cols=65 Identities=20% Similarity=0.146 Sum_probs=41.7
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH--HHHHHH-hccCCeeEEEEeCccCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAF-KQSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~--~~~~~f-~~~~~i~~vVltK~D~~~ 254 (494)
.+++.||||||........ .. ....+|.+++|+|++.+.... ...... ...+++ .+|+||+|...
T Consensus 81 ~~~i~liDTPG~~df~~~~----~~--~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~-ilviNKiD~~~ 148 (704)
T 2rdo_7 81 PHRINIIDTPGHVDFTIEV----ER--SMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPR-IAFVNKMDRMG 148 (704)
T ss_pred ceeEEEEeCCCccchHHHH----HH--HHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCE-EEEEeCCCccc
Confidence 4899999999986533222 11 223579999999999764322 122222 223555 88999999854
No 221
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.65 E-value=4.3e-08 Score=93.16 Aligned_cols=156 Identities=14% Similarity=0.097 Sum_probs=81.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.+. |.+..+++. + +. .+..++..... ..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~------~~~~~~~~~--~---------~~---~g~d~~~~~i~-------------~~ 83 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFA------GVHDSMDSD--C---------EV---LGEDTYERTLM-------------VD 83 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------CCCCTTCCC-----------------CCTTEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHH------hCCCCCCCc--C---------Cc---cceeeEEEEEE-------------EC
Confidence 3569999999999999999998 543222211 0 00 11111110000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH--H-HHHHHHhc-----cCCeeEEEEeCccC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--F-DQAQAFKQ-----SVSVGAVIVTKMDG 252 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~--~-~~~~~f~~-----~~~i~~vVltK~D~ 252 (494)
...+.++++||+|..... ..+. -.....++.+++|.|.+..... . .....+.. ..|+ .+|.||+|+
T Consensus 84 ~~~~~l~~~Dt~g~~~~~----~~l~-~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~pi-ilVgNK~DL 157 (211)
T 2g3y_A 84 GESATIILLDMWENKGEN----EWLH-DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI-ILVGNKSDL 157 (211)
T ss_dssp TEEEEEEEECCTTTTHHH----HHHH-HCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCE-EEEEECTTC
T ss_pred CeeeEEEEeecCCCcchh----hhHH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcE-EEEEEChHH
Confidence 023567899999975421 1111 1112347888899987643211 1 11122221 2444 899999998
Q ss_pred CCCccchhHHHHhcCCCeEEecccccc-ccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 253 HAKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 253 ~~~~g~~ls~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
........... +.. ..+. .+...+|++.|.| ++.+++.+.+.+
T Consensus 158 ~~~r~v~~~e~-------------~~~a~~~~--~~~~e~SAk~g~~-v~elf~~l~~~i 201 (211)
T 2g3y_A 158 VRCREVSVSEG-------------RACAVVFD--CKFIETSAAVQHN-VKELFEGIVRQV 201 (211)
T ss_dssp GGGCCSCHHHH-------------HHHHHHHT--CEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred hcCceEeHHHH-------------HHHHHHcC--CEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 53211111100 100 0011 1345689999999 999999887654
No 222
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.65 E-value=3.3e-08 Score=105.87 Aligned_cols=158 Identities=22% Similarity=0.225 Sum_probs=87.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
++.+|+++|.+|+|||||++.|...-...+... ..+.. +..+...
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~------------------GIT~~-i~~~~v~---------------- 47 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAG------------------GITQH-IGAYHVE---------------- 47 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBC------------------CCCCC-SSCCCCC----------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCC------------------CeeEe-EEEEEEE----------------
Confidence 456799999999999999999974211111100 00100 1001100
Q ss_pred hccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc--cHHHHHHHHh-ccCCeeEEEEeCccCCCCc
Q 011076 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFK-QSVSVGAVIVTKMDGHAKG 256 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~--~~~~~~~~f~-~~~~i~~vVltK~D~~~~~ 256 (494)
..++.+.|+||||........ ...+..+|.+++|+|++.+. ...+.+.... ..+|+ .+++||+|.....
T Consensus 48 -~~~~~i~~iDTPGhe~f~~~~------~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPi-IVviNKiDl~~~~ 119 (501)
T 1zo1_I 48 -TENGMITFLDTPGHAAFTSMR------ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPV-VVAVNKIDKPEAD 119 (501)
T ss_dssp -TTSSCCCEECCCTTTCCTTSB------CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCE-EEEEECSSSSTTC
T ss_pred -ECCEEEEEEECCCcHHHHHHH------HHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceE-EEEEEeccccccC
Confidence 124577899999975432110 11234588999999998652 2223222222 23564 9999999985321
Q ss_pred -cchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHh
Q 011076 257 -GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 257 -g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
.......... +...+.+....|..++|++.|.| ++.|++.+...
T Consensus 120 ~~~v~~~l~~~---------~~~~~~~~~~~~~v~vSAktG~g-I~eLle~I~~~ 164 (501)
T 1zo1_I 120 PDRVKNELSQY---------GILPEEWGGESQFVHVSAKAGTG-IDELLDAILLQ 164 (501)
T ss_dssp CCCTTCCCCCC---------CCCTTCCSSSCEEEECCTTTCTT-CTTHHHHTTTT
T ss_pred HHHHHHHHHHh---------hhhHHHhCCCccEEEEeeeeccC-cchhhhhhhhh
Confidence 1111110000 00001122224667899999999 99999998653
No 223
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.65 E-value=1.1e-07 Score=89.18 Aligned_cols=113 Identities=18% Similarity=0.154 Sum_probs=64.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
+...|+++|++||||||+++.|+ +..... ....+.+. .. .+.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~------~~~~~~-~~~~~~~~----------------~~----~~~----------- 52 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLT------TDSVRP-TVVSQEPL----------------SA----ADY----------- 52 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHH------HSSCCC-BCCCSSCE----------------EE----TTG-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHh------cCCCCC-eeeecCce----------------EE----EEe-----------
Confidence 34579999999999999999998 322100 00011110 00 000
Q ss_pred hccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCC-Cccc---HHHHHHHHh--------ccCCeeEEEE
Q 011076 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS-IGQA---AFDQAQAFK--------QSVSVGAVIV 247 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~-~g~~---~~~~~~~f~--------~~~~i~~vVl 247 (494)
..+.+.|+||||...........+.. ....++.+++|+|++ .... .......+. ...|+ .+|+
T Consensus 53 --~~~~~~l~Dt~G~~~~~~~~~~~~~~--~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~ 127 (218)
T 1nrj_B 53 --DGSGVTLVDFPGHVKLRYKLSDYLKT--RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDI-LIAC 127 (218)
T ss_dssp --GGSSCEEEECCCCGGGTHHHHHHHHH--HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCE-EEEE
T ss_pred --eCceEEEEECCCcHHHHHHHHHHHHh--ccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCE-EEEE
Confidence 25678999999987554333222211 112368899999998 2221 111221111 23444 8999
Q ss_pred eCccCCCC
Q 011076 248 TKMDGHAK 255 (494)
Q Consensus 248 tK~D~~~~ 255 (494)
||+|....
T Consensus 128 nK~Dl~~~ 135 (218)
T 1nrj_B 128 NKSELFTA 135 (218)
T ss_dssp ECTTSTTC
T ss_pred EchHhccc
Confidence 99998654
No 224
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.63 E-value=1.1e-07 Score=103.89 Aligned_cols=117 Identities=14% Similarity=0.143 Sum_probs=64.6
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc--HHHHHHHHhc-cCCeeEEEEeCccCCCCccc--
Q 011076 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQ-SVSVGAVIVTKMDGHAKGGG-- 258 (494)
Q Consensus 184 ~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~--~~~~~~~f~~-~~~i~~vVltK~D~~~~~g~-- 258 (494)
+.+.|+||||........ ......+|.+++|+|++.|.. ..+....+.. .+|+ .+|+||+|.......
T Consensus 70 ~~i~liDTPGhe~F~~~~------~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPi-IVViNKiDl~~~~~~~~ 142 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFTTLR------KRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPF-VVAANKIDRIHGWRVHE 142 (594)
T ss_dssp CEEEEECCCTTSCCTTSB------CSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCE-EEEEECGGGSTTCCCCT
T ss_pred CCEEEEECCCcHHHHHHH------HHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeE-EEEeccccccccccccc
Confidence 458999999985432110 011235899999999998633 2222333322 3454 999999998532100
Q ss_pred ---hhH----------------------HHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 259 ---ALS----------------------AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 259 ---~ls----------------------~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
... .....+..-... ..+.+.....|..++|++.|.| +..|++.+...+
T Consensus 143 ~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~---~~l~~~~~~vpvv~vSA~tG~G-I~eLl~~I~~~~ 216 (594)
T 1g7s_A 143 GRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERF---DRVTDFASQVSIIPISAITGEG-IPELLTMLMGLA 216 (594)
T ss_dssp TCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEG---GGCSCTTTEEEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHH---HHHHhccCcceEEEEeccCCCC-chhHHHHHHhhc
Confidence 000 000011100000 0011112234677899999999 999999987654
No 225
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.63 E-value=1e-07 Score=100.13 Aligned_cols=66 Identities=24% Similarity=0.318 Sum_probs=41.9
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccH--HHHHHHHh-ccCCeeEEEEeCccCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFK-QSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~--~~~~~~f~-~~~~i~~vVltK~D~~~ 254 (494)
++.+.|+||||....... + ...+..+|.+++|+|++.+... .+...... ..++...+|+||+|...
T Consensus 103 ~~~~~iiDtpGh~~f~~~----~--~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 103 KRKFIIADTPGHEQYTRN----M--ATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNG 171 (434)
T ss_dssp SEEEEEEECCCSGGGHHH----H--HHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTT
T ss_pred CceEEEEECCChHHHHHH----H--HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCc
Confidence 567899999997643322 2 1234578999999999876432 12222221 12343488999999864
No 226
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=98.62 E-value=3.1e-07 Score=94.89 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=34.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
+++++.|..|+||||++.+||.++++.|++|++|++
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 567888999999999999999999999999999999
No 227
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.61 E-value=3.3e-08 Score=103.02 Aligned_cols=28 Identities=21% Similarity=0.124 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
.|+++|.|||||||++|+|. +.+ +.++.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~------~~~-~~~~~ 29 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAAT------LVD-VEIAN 29 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHH------C--------
T ss_pred EEEEECCCCCCHHHHHHHHH------CCC-CcccC
Confidence 48999999999999999999 666 44444
No 228
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.59 E-value=1.8e-07 Score=98.49 Aligned_cols=67 Identities=22% Similarity=0.291 Sum_probs=42.0
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc---------cHHHHHHHHh-ccCCeeEEEEeCcc
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---------AAFDQAQAFK-QSVSVGAVIVTKMD 251 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~---------~~~~~~~~f~-~~~~i~~vVltK~D 251 (494)
.++.+.|+||||...... .+ ...+..+|.+++|+|++.+. ...+...... ..++...+|+||+|
T Consensus 82 ~~~~~~iiDtpG~~~f~~----~~--~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~D 155 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVK----NM--ITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMD 155 (435)
T ss_dssp SSCEEEECCCSSSTTHHH----HH--HHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGG
T ss_pred CCeEEEEEECCCcHHHHH----HH--HhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEccc
Confidence 467899999999865332 11 23345789999999998751 1111111111 12333488999999
Q ss_pred CCC
Q 011076 252 GHA 254 (494)
Q Consensus 252 ~~~ 254 (494)
...
T Consensus 156 l~~ 158 (435)
T 1jny_A 156 LTE 158 (435)
T ss_dssp GSS
T ss_pred CCC
Confidence 865
No 229
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.58 E-value=1.1e-07 Score=104.73 Aligned_cols=182 Identities=16% Similarity=0.109 Sum_probs=102.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcC--CceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKG--WKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g--~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
.|+++|..++|||||+-+|..+-..-. .+|. .-+++ .|. ...-..-||.+..... .+.
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~--~g~~~----~D~-~~~EreRGITI~s~~~-------------~~~ 63 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVD--KGTTR----TDN-TLLERQRGITIQTGIT-------------SFQ 63 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCC--CSCCS----TTC-STTHHHHSSCSSCCCC-------------CCB
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccc--cCCcc----cCC-cHHHHhCCCcEEeeeE-------------EEE
Confidence 489999999999999999986553211 1110 00000 000 0011112332222111 112
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH--HHH-HHhccCCeeEEEEeCccCCCC-c
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD--QAQ-AFKQSVSVGAVIVTKMDGHAK-G 256 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~--~~~-~f~~~~~i~~vVltK~D~~~~-~ 256 (494)
.+++.+-||||||......+.... ....|.+++|+||..|..... ..+ .....+|+ .+++||+|.... .
T Consensus 64 ~~~~~iNlIDTPGH~DF~~Ev~ra------L~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~-i~~INKmDr~~a~~ 136 (638)
T 3j25_A 64 WENTKVNIIDTPGHMDFLAEVYRS------LSVLDGAILLISAKDGVQAQTRILFHALRKMGIPT-IFFINKIDQNGIDL 136 (638)
T ss_dssp CSSCBCCCEECCCSSSTHHHHHHH------HTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSC-EECCEECCSSSCCS
T ss_pred ECCEEEEEEECCCcHHHHHHHHHH------HHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCe-EEEEeccccccCCH
Confidence 247888999999998765444332 235799999999998754322 222 22334666 889999997433 2
Q ss_pred cchhH-HHHhcCCCeEEecccc----------------------------------cccc------------ccccCccc
Q 011076 257 GGALS-AVAATKSPVIFIGTGE----------------------------------HMDE------------FEVFDVKP 289 (494)
Q Consensus 257 g~~ls-~~~~~g~Pi~fi~~Ge----------------------------------~i~~------------l~~f~p~~ 289 (494)
...+. +....+.++.+...-+ .++. -..+.|..
T Consensus 137 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~ 216 (638)
T 3j25_A 137 STVYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLY 216 (638)
T ss_dssp HHHHHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCC
T ss_pred HHHHHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhccccccccc
Confidence 22222 2233343332221100 0000 01245777
Q ss_pred hhhcccCCCCchHHHHHHHHhCC
Q 011076 290 FVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 290 ~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
+.|++.+.| ++.|++.+.+.+|
T Consensus 217 ~gSa~~~~G-v~~LLd~i~~~~p 238 (638)
T 3j25_A 217 HGSAKSNIG-IDNLIEVITNKFY 238 (638)
T ss_dssp CCCSTTCCS-HHHHHHHHHHSCC
T ss_pred ccccccCCC-chhHhhhhhcccc
Confidence 889999999 9999999999886
No 230
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.58 E-value=2.2e-07 Score=102.88 Aligned_cols=125 Identities=16% Similarity=0.157 Sum_probs=67.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHh---cCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK---KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~---~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~ 177 (494)
...|+++|++|+||||+++.|+..... .| +| .+............ +.++.+.....
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G-~V--~~g~~~~d~~~~e~-----~~giti~~~~~------------- 67 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRG-RV--EEGTTTTDYTPEAK-----LHRTTVRTGVA------------- 67 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCC-CG--GGTCCSSCCSHHHH-----HTTSCCSCEEE-------------
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccc-ee--cCCcccccCCHHHH-----hcCCeEEecce-------------
Confidence 467999999999999999999955331 12 12 00000000000000 11121111000
Q ss_pred HHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH--HHHHHHh-ccCCeeEEEEeCccCC
Q 011076 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAFK-QSVSVGAVIVTKMDGH 253 (494)
Q Consensus 178 ~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~--~~~~~f~-~~~~i~~vVltK~D~~ 253 (494)
.+....+.+.|+||||.......... ....+|.+++|+|++.+.+.. ....... ..+++ .+|+||+|..
T Consensus 68 ~~~~~~~~~nliDTpG~~~f~~~~~~------~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~-ilv~NKiD~~ 139 (665)
T 2dy1_A 68 PLLFRGHRVFLLDAPGYGDFVGEIRG------ALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPR-MVVVTKLDKG 139 (665)
T ss_dssp EEEETTEEEEEEECCCSGGGHHHHHH------HHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCE-EEEEECGGGC
T ss_pred EEeeCCEEEEEEeCCCccchHHHHHH------HHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCE-EEEecCCchh
Confidence 00112567899999998654322211 122478999999998775432 2222222 23455 8899999986
No 231
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.57 E-value=1.8e-08 Score=92.19 Aligned_cols=166 Identities=16% Similarity=0.110 Sum_probs=82.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|.. .+. .+.+.|.. +..+...... .
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~------~~~----~~~~~~t~-----------~~~~~~~~~~--------------~ 51 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAK------DCF----PENYVPTV-----------FENYTASFEI--------------D 51 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH------SCC----CSSCCCCS-----------EEEEEEEEEC--------------S
T ss_pred EEEEEEECCCCCCHHHHHHHHhc------CCC----CCCCCCcc-----------ceeEEEEEEE--------------C
Confidence 45689999999999999999983 211 01121110 0000000000 0
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHH----HHHHhc---cCCeeEEEEeCccCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ----AQAFKQ---SVSVGAVIVTKMDGH 253 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~----~~~f~~---~~~i~~vVltK~D~~ 253 (494)
...+.+.|+||||...... + . ......+|.+++|+|++......+. ...+.. ..| ..+|.||+|..
T Consensus 52 ~~~~~~~i~Dt~G~~~~~~-~----~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~ 124 (184)
T 1m7b_A 52 TQRIELSLWDTSGSPYYDN-V----R-PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLR 124 (184)
T ss_dssp SCEEEEEEEEECCSGGGTT-T----G-GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGG
T ss_pred CEEEEEEEEECCCChhhhh-h----H-HhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEcchhh
Confidence 1246789999999743211 1 0 0123468999999999854322211 122222 234 48999999986
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccccCccchhhcc-cCCCCchHHHHHHHHh
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL-LGMGDWSGFMDKIHEV 310 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~-~G~Gdi~~L~e~i~~~ 310 (494)
...............++.. ..++.+..-....+...+|++ .|.| ++.+++.+.+.
T Consensus 125 ~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~e~Sa~~~~~g-i~~l~~~i~~~ 180 (184)
T 1m7b_A 125 TDVSTLVELSNHRQTPVSY-DQGANMAKQIGAATYIECSALQSENS-VRDIFHVATLA 180 (184)
T ss_dssp GCHHHHHHHHTTTCCCCCH-HHHHHHHHHHTCSEEEECBTTTBHHH-HHHHHHHHHHH
T ss_pred cchhhHhhhhhcccCCCCH-HHHHHHHHHcCCcEEEEeeecCCCcC-HHHHHHHHHHH
Confidence 4311100000000000000 000111100012345568888 5788 99998887664
No 232
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.56 E-value=9.8e-08 Score=88.34 Aligned_cols=113 Identities=12% Similarity=0.077 Sum_probs=58.4
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc-cHHH----HHHHH---hccCCeeEEEEeCccCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ-AAFD----QAQAF---KQSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~-~~~~----~~~~f---~~~~~i~~vVltK~D~~~ 254 (494)
.+.+.|+||||.......... .-.....+|.+++|+|++... +... ....+ ....+ ..+|.||+|...
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~~~---~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~p-iilv~nK~Dl~~ 143 (196)
T 3llu_A 68 FVNFQIWDFPGQMDFFDPTFD---YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMN-FEVFIHKVDGLS 143 (196)
T ss_dssp SCCEEEEECCSSCCTTCTTCC---HHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGGSC
T ss_pred eeEEEEEECCCCHHHHhhhhh---cccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCc-EEEEEeccccCc
Confidence 578999999997542211100 001123689999999998641 2222 12222 11234 489999999754
Q ss_pred Cccch---hHHHHhcCCCeEEecccccccc-c--cccCccchhhcccCCCCchHHHHHHHHh
Q 011076 255 KGGGA---LSAVAATKSPVIFIGTGEHMDE-F--EVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (494)
Q Consensus 255 ~~g~~---ls~~~~~g~Pi~fi~~Ge~i~~-l--~~f~p~~~vs~~~G~Gdi~~L~e~i~~~ 310 (494)
..... ..+... .++.+.. . ....+...+|++. .| ++.+++.+.+.
T Consensus 144 ~~~~~~~~~~v~~~---------~~~~~~~~~~~~~~~~~~e~Sa~~-~~-v~~~f~~l~~~ 194 (196)
T 3llu_A 144 DDHKIETQRDIHQR---------ANDDLADAGLEKLHLSFYLTSIYD-HS-IFEAFSKVVQK 194 (196)
T ss_dssp HHHHHHHHHHHHHH---------HHHHHHHTTCTTSCEEEEEECTTS-TH-HHHHHHHHHHH
T ss_pred hhhhhHHHhHHHHH---------HHHHHHHhhhhcCCcceEEEEech-hh-HHHHHHHHHHH
Confidence 21000 001000 0011100 0 1112345689988 88 99998887654
No 233
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.54 E-value=2.6e-07 Score=106.60 Aligned_cols=169 Identities=17% Similarity=0.076 Sum_probs=89.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEE--EEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPAL--VCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVai--Vs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~ 178 (494)
...|+++|.+|+||||+++.|.....+.|..... ...|. +.. ....++.+..... .
T Consensus 296 ~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~--------~~~-ErerGITIdva~v-------------~ 353 (1289)
T 3avx_A 296 HVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDN--------APE-EKARGITINTSHV-------------E 353 (1289)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHHHSCC------------------------------CCSCE-------------E
T ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhcccccccccccccccc--------ccc-cccCceeEEEEEE-------------E
Confidence 4579999999999999999999765554421100 00111 000 0011121110000 0
Q ss_pred HhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc--HHHHHHHHh-ccCCeeEEEEeCccCCCC
Q 011076 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFK-QSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 179 ~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~--~~~~~~~f~-~~~~i~~vVltK~D~~~~ 255 (494)
+...++.+.|+||||.... ...+ +..+..+|.+++|+|++.+.. ..+.+.... ..++...+|+||+|....
T Consensus 354 f~~~~~kI~IIDTPGHedF----~~~m--i~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d 427 (1289)
T 3avx_A 354 YDTPTRHYAHVDCPGHADY----VKNM--ITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDD 427 (1289)
T ss_dssp EECSSCEEEEEECCCHHHH----HHHH--HHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCC
T ss_pred EcCCCEEEEEEECCChHHH----HHHH--HHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccc
Confidence 1113578999999997532 2222 233457899999999987632 222222222 234533789999998643
Q ss_pred ccchhH--------HHHhcCCCeEEeccccccccccccCccchhhcccC--------CCCchHHHHHHHHhCC
Q 011076 256 GGGALS--------AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG--------MGDWSGFMDKIHEVVP 312 (494)
Q Consensus 256 ~g~~ls--------~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G--------~Gdi~~L~e~i~~~~~ 312 (494)
. ..+. .+...+.+ ....|..++|++.| .| +..|++.+.+.++
T Consensus 428 ~-e~le~i~eEi~elLk~~G~~-------------~~~vp~IpvSAktG~ng~~~w~eG-I~eLleaL~~~Ip 485 (1289)
T 3avx_A 428 E-ELLELVEMEVRELLSQYDFP-------------GDDTPIVRGSALKALEGDAEWEAK-ILELAGFLDSYIP 485 (1289)
T ss_dssp H-HHHHHHHHHHHHHHHHTTSC-------------TTTCCEEECCSTTTTTCCHHHHHH-HHHHHHHHHHTSC
T ss_pred h-hhHHHHHHHHHHHHHhcccc-------------ccceeEEEEEeccCCCCCcccccc-chhhHhHHhhhcC
Confidence 2 1111 11111100 01124556777777 35 7889999988775
No 234
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.54 E-value=7.9e-08 Score=89.14 Aligned_cols=156 Identities=14% Similarity=0.110 Sum_probs=77.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|.+||||||+++.++ |.+..+++. ... .+..++..... ...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~------~~~~~~~~~-----------~~~---~~~~~~~~~~~-------------~~~ 53 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFA------GVHDSMDSD-----------XEV---LGEDTYERTLM-------------VDG 53 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHH------HHSCCC---------------GG---GCTTEEEEEEE-------------ETT
T ss_pred EEEEEECCCCCCHHHHHHHHh------cCcCCcCcc-----------ccc---cceeEEEEEEE-------------ECC
Confidence 469999999999999999998 322222221 000 11111110000 000
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCccc--HH-HHHHHHh---c--cCCeeEEEEeCccCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AF-DQAQAFK---Q--SVSVGAVIVTKMDGH 253 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~--~~-~~~~~f~---~--~~~i~~vVltK~D~~ 253 (494)
..+.++++||+|....... +... ....++.+++|.|.+.... .. .....+. . ..++ .+|.||+|..
T Consensus 54 ~~~~l~~~Dt~~~~~~~~~----~~~~-~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~pi-ilV~NK~Dl~ 127 (192)
T 2cjw_A 54 ESATIILLDMWENKGENEW----LHDH-CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI-ILVGNKSDLV 127 (192)
T ss_dssp EEEEEEEECCCCC----CT----TGGG-HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCE-EEEEECTTCG
T ss_pred eEEEEEEEEeccCcchhhh----HHHh-hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeE-EEEEechhhh
Confidence 1346689999997532111 1100 1123677888888764321 11 1111121 1 2344 8899999985
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
......... |+.... ....+...+|++.|.| ++.+++.+.+.+
T Consensus 128 ~~r~v~~~~-------------~~~~a~-~~~~~~~e~SA~~g~~-v~~lf~~l~~~~ 170 (192)
T 2cjw_A 128 RXREVSVSE-------------GRAXAV-VFDXKFIETSAAVQHN-VKELFEGIVRQV 170 (192)
T ss_dssp GGCCSCHHH-------------HHHHHH-HTTCEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred ccccccHHH-------------HHHHHH-HhCCceEEeccccCCC-HHHHHHHHHHHH
Confidence 321111110 011100 0011335589999999 999999887654
No 235
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.53 E-value=7.5e-08 Score=96.58 Aligned_cols=117 Identities=19% Similarity=0.168 Sum_probs=64.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+++|.+||||||+++.+. +.....++. ....| .++.+..... .
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~------~~~~~~~~~-----------~~~~T-i~~~~~~~~~----------------~ 49 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIF------SNYSAFDTR-----------RLGAT-IDVEHSHLRF----------------L 49 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHH------SCCCTGGGG-----------GCCCC-CSEEEEEEEE----------------T
T ss_pred eEEEEECCCCCCHHHHHHHHH------hCCCCcccc-----------CcCCc-cceEEEEEEe----------------C
Confidence 469999999999999999987 432111111 01111 1222111000 0
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH------HHHHHhc---cCCeeEEEEeCccC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD------QAQAFKQ---SVSVGAVIVTKMDG 252 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~------~~~~f~~---~~~i~~vVltK~D~ 252 (494)
.++.+.|+||||.....+.....+ .-.....+|.+++|+|++......+ ....+.. ..| ..+|+||+|.
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~-~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~p-iilv~NK~Dl 127 (307)
T 3r7w_A 50 GNMTLNLWDCGGQDVFMENYFTKQ-KDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAK-IFVLLHKMDL 127 (307)
T ss_dssp TTEEEEEEEECCSHHHHHHHHTTT-HHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGG
T ss_pred CceEEEEEECCCcHHHhhhhhhhH-HHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCe-EEEEEecccc
Confidence 256789999999753311111111 1112347899999999986542211 1222221 234 4899999998
Q ss_pred CC
Q 011076 253 HA 254 (494)
Q Consensus 253 ~~ 254 (494)
..
T Consensus 128 ~~ 129 (307)
T 3r7w_A 128 VQ 129 (307)
T ss_dssp SC
T ss_pred cc
Confidence 65
No 236
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.53 E-value=6.9e-07 Score=93.43 Aligned_cols=261 Identities=15% Similarity=0.148 Sum_probs=124.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
+.+++|+|++||||||+++.|+..+.- .+..+.... ...++.++ ++.. .
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p--~~GsI~~~g-----------~~~t~~~~-v~q~-~---------------- 117 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNE--EEGAAKTGV-----------VEVTMERH-PYKH-P---------------- 117 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTT--STTSCCCCC---------------CCCE-EEEC-S----------------
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCc--cCceEEECC-----------eecceeEE-eccc-c----------------
Confidence 458999999999999999999921111 111111110 00111122 1111 1
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc-cHHHHHHHHhccCCeeEEEEeCccCCC-----
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ-AAFDQAQAFKQSVSVGAVIVTKMDGHA----- 254 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~-~~~~~~~~f~~~~~i~~vVltK~D~~~----- 254 (494)
....+.++|++|.........+.+..+ .....+..++ ++...++ .....+.++...-....+|+||.|..-
T Consensus 118 -~~~~ltv~D~~g~~~~~~~~~~~L~~~-~L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPt 194 (413)
T 1tq4_A 118 -NIPNVVFWDLPGIGSTNFPPDTYLEKM-KFYEYDFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEAD 194 (413)
T ss_dssp -SCTTEEEEECCCGGGSSCCHHHHHHHT-TGGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHT
T ss_pred -ccCCeeehHhhcccchHHHHHHHHHHc-CCCccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCccc
Confidence 123689999999864322222222211 1222344444 7765333 233455555543234489999987520
Q ss_pred C------ccchhHHHHhcCCCeEEeccccccccc-cccCccchhhc--ccCCCCchHHHHHHHHhCCCCCchHHHhhhhc
Q 011076 255 K------GGGALSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSR--LLGMGDWSGFMDKIHEVVPMDQQPELLQKLSE 325 (494)
Q Consensus 255 ~------~g~~ls~~~~~g~Pi~fi~~Ge~i~~l-~~f~p~~~vs~--~~G~Gdi~~L~e~i~~~~~~~~~~~~~~~~~~ 325 (494)
. ....+......- -+.+.+. .++...+++|+ +.+.| ++.|.+.+.+.+|+.+.......+-.
T Consensus 195 sgLD~~~~~~l~~~l~~l~--------~~~l~~~g~~~~~iiliSsh~l~~~~-~e~L~d~I~~~Lpeg~~~~~~~~l~~ 265 (413)
T 1tq4_A 195 GEPQTFDKEKVLQDIRLNC--------VNTFRENGIAEPPIFLLSNKNVCHYD-FPVLMDKLISDLPIYKRHNFMVSLPN 265 (413)
T ss_dssp TCCTTCCHHHHHHHHHHHH--------HHHHHHTTCSSCCEEECCTTCTTSTT-HHHHHHHHHHHSCGGGHHHHHHHSCC
T ss_pred ccCCHHHHHHHHHHHHHHH--------HHHHHhcCCCCCcEEEEecCcCCccC-HHHHHHHHHHhCccchhhHHHHhccc
Confidence 0 011111111000 0000011 12334466777 55556 99999999999976542222122222
Q ss_pred -chhhHHHHHHHHHHHhcc-CChhHHhhcCC--CCCCccCcchhhhhhHHhHHhHhHhhcCCCHHhhcCCCCCCcchHHH
Q 011076 326 -GNFTLRIMYEQFQNILKM-GPIGQVFSMLP--GFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRI 401 (494)
Q Consensus 326 -~~f~~~d~~~ql~~~~~~-g~~~~~~~~lP--g~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~i~~sr~ 401 (494)
.+-+.++=...+++.... .-.+....-+| |+.+ ......-...+..|..+.- ++..=+
T Consensus 266 ~~~~~~e~k~~~~~~~i~~~a~~a~~~~~~P~~g~~~----~~~~~~~~~~l~~~~~~FG--------------ld~~sl 327 (413)
T 1tq4_A 266 ITDSVIEKKRQFLKQRIWLEGFAADLVNIIPSLTFLL----DSDLETLKKSMKFYRTVFG--------------VDETSL 327 (413)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTCCBSSCTTSSCCC----HHHHHHHHHHHHHHHHHTT--------------CSHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhc----cccHHHHHHHHHHHHHhcC--------------CCHHHH
Confidence 122332222222221111 11122223333 4321 1101111233444444332 355569
Q ss_pred HHHHhhcCCCHHHHHHHHHHH
Q 011076 402 MRIARGSGRQVREVMEMLEEY 422 (494)
Q Consensus 402 ~rIa~gsg~~~~~v~~ll~~~ 422 (494)
+|||+..|++++|+..+++..
T Consensus 328 ~~~a~~~~~~~~~~~~~~~s~ 348 (413)
T 1tq4_A 328 QRLARDWEIEVDQVEAMIKSP 348 (413)
T ss_dssp HHHHSSSSSCHHHHHHTCSHH
T ss_pred HHHHHHhCCCHHHHHHHHhCh
Confidence 999999999999999988876
No 237
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.51 E-value=1e-07 Score=87.30 Aligned_cols=162 Identities=20% Similarity=0.114 Sum_probs=79.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|++||||||+++.|+ +........ + ....++.+........ .....
T Consensus 4 kv~ivG~~gvGKStLl~~l~------~~~~~~~~~--~-----------~~t~g~~~~~~~~~~~----------~~~~~ 54 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLM------KTKKSDLGM--Q-----------SATVGIDVKDWPIQIR----------DKRKR 54 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHT------CC------------------------CSEEEEEEEC------------------
T ss_pred EEEEECCCCCCHHHHHHHHh------cCCCccCCC--c-----------ceeccEEeEEeeeccc----------cCCCC
Confidence 59999999999999999998 532111110 0 0112232221110000 00012
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH----HHHHHhc---cCCeeEEEEeCccCCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ---SVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~----~~~~f~~---~~~i~~vVltK~D~~~~ 255 (494)
.+.+.|+||||...... +.. ......+.+++|.|.+.++...+ ....+.. ..+ ..+|.||+|....
T Consensus 55 ~~~~~i~Dt~G~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 127 (184)
T 2zej_A 55 DLVLNVWDFAGREEFYS-THP-----HFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP-VILVGTHLDVSDE 127 (184)
T ss_dssp -CEEEEEEECSHHHHHT-TSH-----HHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCE-EEEEEECGGGCCH
T ss_pred ceEEEEEecCCCHHHHH-hhH-----HHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCc-EEEEEECCCcccc
Confidence 56789999999642211 111 11123677888999876532222 1222221 233 3777899998543
Q ss_pred ccchhH-HHHhcCCCeEEeccccccc-ccc--ccCccchhhcccCC-CCchHHHHHHHHhCC
Q 011076 256 GGGALS-AVAATKSPVIFIGTGEHMD-EFE--VFDVKPFVSRLLGM-GDWSGFMDKIHEVVP 312 (494)
Q Consensus 256 ~g~~ls-~~~~~g~Pi~fi~~Ge~i~-~l~--~f~p~~~vs~~~G~-Gdi~~L~e~i~~~~~ 312 (494)
. ..+ ..... ++.+. .+. ...+...+|++.|. | ++.|++.+.+.+.
T Consensus 128 ~--~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~Sa~~~~~~-~~~l~~~i~~~~~ 177 (184)
T 2zej_A 128 K--QRKACMSKI---------TKELLNKRGFPAIRDYHFVNATEESDA-LAKLRKTIINESL 177 (184)
T ss_dssp H--HHHHHHHHH---------HHHTTTCTTSCEEEEEEECCTTSCCHH-HHHHHHHHHHHHH
T ss_pred h--hhHHHHHHH---------HHHHHHhcCCcchhheEEEecccCchh-HHHHHHHHHHHHh
Confidence 1 111 00000 01111 111 00124568999996 7 8999988877653
No 238
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.51 E-value=1.7e-08 Score=94.81 Aligned_cols=166 Identities=16% Similarity=0.109 Sum_probs=82.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|.. .+.. +.+.+.. +..+...... .
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~------~~~~----~~~~~t~-----------~~~~~~~~~~--------------~ 72 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAK------DCFP----ENYVPTV-----------FENYTASFEI--------------D 72 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH------SCCC----SSCCCCS-----------EEEEEEEEES--------------S
T ss_pred eeEEEEECCCCCCHHHHHHHHhc------CCCC----CCcCCcc-----------ceeEEEEEEE--------------C
Confidence 45799999999999999999983 2210 1111100 0000000000 0
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHH----HHHHhc---cCCeeEEEEeCccCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ----AQAFKQ---SVSVGAVIVTKMDGH 253 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~----~~~f~~---~~~i~~vVltK~D~~ 253 (494)
...+.+.|+||||...... +. ......+|.+++|+|++......+. ...+.. ..+ ..+|.||+|..
T Consensus 73 ~~~~~l~i~Dt~G~~~~~~-----~~-~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~ 145 (205)
T 1gwn_A 73 TQRIELSLWDTSGSPYYDN-----VR-PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLR 145 (205)
T ss_dssp SSEEEEEEEEECCSGGGTT-----TG-GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGG
T ss_pred CEEEEEEEEeCCCcHhhhH-----HH-HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEechhhc
Confidence 1246789999999743221 10 0123468999999999854322111 122222 233 48999999986
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccccCccchhhcc-cCCCCchHHHHHHHHh
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL-LGMGDWSGFMDKIHEV 310 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~-~G~Gdi~~L~e~i~~~ 310 (494)
...............+|.. ..++.+..-....+...+|++ .|.| ++.+++.+.+.
T Consensus 146 ~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~e~SAk~~~~g-v~~lf~~l~~~ 201 (205)
T 1gwn_A 146 TDVSTLVELSNHRQTPVSY-DQGANMAKQIGAATYIECSALQSENS-VRDIFHVATLA 201 (205)
T ss_dssp GCHHHHHHHHTTTCCCCCH-HHHHHHHHHHTCSEEEECCTTTCHHH-HHHHHHHHHHH
T ss_pred cchhhhhhhcccccCCCCH-HHHHHHHHHcCCCEEEEeeeccCCcC-HHHHHHHHHHH
Confidence 4311100000000000000 000111100012244568888 5778 88888887654
No 239
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.47 E-value=1e-06 Score=90.55 Aligned_cols=102 Identities=18% Similarity=0.100 Sum_probs=50.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCCh-HHHHHHHHHHHhc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDP-VRIAVEGVETFKK 181 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp-~~i~~~~l~~~~~ 181 (494)
.|+++|+|||||||++|.|+ +.+ +.++. .+.+|..-. .+.....+. ...........+.
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt------~~~-~~v~~-----------~p~tTi~p~--~g~v~~~~~r~~~l~~~~~~~~~ 63 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALT------KAG-IEAAN-----------YPFCTIEPN--TGVVPMPDPRLDALAEIVKPERI 63 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHH------HTC------------------CCCCCCCC--SSEEECCCHHHHHHHHHHCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHH------CCC-CcccC-----------CCCceECce--EEEEecCCcccceeeeeecccce
Confidence 58999999999999999999 444 22322 111221100 000000111 0000000000011
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHH-H-HHHhcCCCEEEEEecCCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMR-Q-VSEATNPDLVIFVMDSSI 225 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~-~-i~~~~~~d~vllVvDa~~ 225 (494)
....+.|+||||....... .+.+. . +.....+|.+++|+|++.
T Consensus 64 ~~~~i~lvDtpGl~~~a~~-~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 64 LPTTMEFVDIAGLVAGASK-GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp ECCEEEEEECCSCCTTHHH-HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eeeEEEEEECCCCcccccc-cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 1357899999998754321 11111 1 122447899999999974
No 240
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.46 E-value=6e-08 Score=96.73 Aligned_cols=167 Identities=14% Similarity=0.068 Sum_probs=84.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.+.. .+. .+.+.+ ++...........
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~------~~~----~~~~~~---------t~~~~~~~~~~~~---------------- 199 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTT------NAF----PGEYIP---------TVFDNYSANVMVD---------------- 199 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH------SCC----CCSCCC---------CSEEEEEEEEEET----------------
T ss_pred eeEEEEECCCCCChHHHHHHHHh------CCC----CcccCC---------cccceeEEEEEEC----------------
Confidence 35699999999999999999982 111 001111 0000000000000
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHH----HHHHhc---cCCeeEEEEeCccCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ----AQAFKQ---SVSVGAVIVTKMDGH 253 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~----~~~f~~---~~~i~~vVltK~D~~ 253 (494)
...+.+.|+||||...... + .......+|.+++|+|++......+. ...+.. ..|+ .+|+||+|..
T Consensus 200 ~~~~~~~l~Dt~G~~~~~~-----~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~ 272 (332)
T 2wkq_A 200 GKPVNLGLWDTAGLEDYDR-----L-RPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI-ILVGTKLDLR 272 (332)
T ss_dssp TEEEEEEEEEECCCGGGTT-----T-GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCE-EEEEECHHHH
T ss_pred CEEEEEEEEeCCCchhhhH-----H-HHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcE-EEEEEchhcc
Confidence 1234566999999753321 0 01123368999999999865432221 122222 3454 8999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.... .................++.+.....+.+...+|++.|.| ++.+++.+.+.+
T Consensus 273 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 328 (332)
T 2wkq_A 273 DDKD-TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG-LKTVFDEAIRAV 328 (332)
T ss_dssp TCHH-HHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred cccc-hhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcC-HHHHHHHHHHHH
Confidence 4311 1111111000000000001110111123556789999999 999999887654
No 241
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.46 E-value=5.8e-08 Score=91.63 Aligned_cols=168 Identities=14% Similarity=0.083 Sum_probs=84.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
...|+++|.+||||||+++.|. +.+.. ..+.+. .+..+...... .
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~------~~~~~----~~~~~t-----------~~~~~~~~~~~--------------~ 71 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLA------KDCYP----ETYVPT-----------VFENYTACLET--------------E 71 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH------HSCCC----SSCCCC-----------SEEEEEEEEEC---------------
T ss_pred eEEEEEECcCCCCHHHHHHHHh------cCCCC----CCcCCe-----------eeeeEEEEEEE--------------C
Confidence 4579999999999999999998 22210 111110 01111000000 0
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH----HHHHHhc---cCCeeEEEEeCccCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ---SVSVGAVIVTKMDGH 253 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~----~~~~f~~---~~~i~~vVltK~D~~ 253 (494)
...+.+.|+||||...... +. -.....+|.+++|+|++......+ ....+.. ..+ ..+|.||+|..
T Consensus 72 ~~~~~l~i~Dt~G~~~~~~-----~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~ 144 (214)
T 3q3j_B 72 EQRVELSLWDTSGSPYYDN-----VR-PLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR-VLLIGCKTDLR 144 (214)
T ss_dssp -CEEEEEEEEECCSGGGTT-----TG-GGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSE-EEEEEECGGGG
T ss_pred CEEEEEEEEECCCCHhHHH-----HH-HHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhc
Confidence 1246788999999753221 00 011336899999999986543222 1222222 234 48999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 254 ~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
................+ -...++.+..-..+.+...+|++.|.|.++.+++.+.+.+
T Consensus 145 ~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 145 TDLSTLMELSHQKQAPI-SYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLC 201 (214)
T ss_dssp GCHHHHHHHHHTTCCCC-CHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhcccccCcc-CHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHH
Confidence 42110000000000000 0000011111111224456899998855888888887765
No 242
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=98.45 E-value=3.3e-07 Score=99.87 Aligned_cols=41 Identities=29% Similarity=0.387 Sum_probs=36.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r 141 (494)
..++++.|.+|+||||++.+||..++++|++|++|++|+..
T Consensus 327 ~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~~ 367 (589)
T 1ihu_A 327 HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAA 367 (589)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC-
T ss_pred CeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCcc
Confidence 34566679999999999999999999999999999999863
No 243
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.44 E-value=3.4e-07 Score=87.99 Aligned_cols=44 Identities=16% Similarity=0.122 Sum_probs=39.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhH
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF 145 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~ 145 (494)
-.|++.|++||||||++.++|.++.++|++|.+++.|++.....
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~ 50 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAET 50 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhH
Confidence 45888899999999999999999999999999999999765543
No 244
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=98.44 E-value=3.5e-06 Score=80.99 Aligned_cols=166 Identities=10% Similarity=0.085 Sum_probs=86.5
Q ss_pred CeEEEEEcC-CCCcHHHHHHHHHHHHHhcCCceEEEEc---ccCc-c-hh--HHHHHhhhhcc----C-cceeccCCCCC
Q 011076 101 PSVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCA---DTFR-A-GA--FDQLKQNATKA----K-IPFYGSYTESD 167 (494)
Q Consensus 101 ~~vI~lvG~-~GvGKTTl~~kLA~~l~~~g~kVaiVs~---D~~r-~-~a--~~qLk~~~~~~----~-i~~~~~~~~~d 167 (494)
.+.++++|. +|+||||++..|+..|+++|++|+..-. -+.. . +- .|-+...+... . .++.- .....
T Consensus 4 mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KPv~~g~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~-~~p~s 82 (228)
T 3of5_A 4 MKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKPVASGQSQFSELCEDVESILNAYKHKFTAAEINLISF-NQAVA 82 (228)
T ss_dssp CEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECSEEESBCSSSSSBHHHHHHHHHTTTSSCHHHHCSEEE-SSSSC
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecceeecCccCCCCCChHHHHHHhcCCCCChhhEEEEEE-CCCCC
Confidence 356889998 6999999999999999999999987642 1111 1 10 11111111100 0 01110 00000
Q ss_pred ------------hHHHHHHHHHHHhccCCcEEEEeCCCCCch--hH-HHHHHHHHHHHhcCCCEEEEEecCCCccc--HH
Q 011076 168 ------------PVRIAVEGVETFKKENCDLIIVDTSGRHKQ--EA-ALFEEMRQVSEATNPDLVIFVMDSSIGQA--AF 230 (494)
Q Consensus 168 ------------p~~i~~~~l~~~~~~~~dvIIIDTaG~~~~--~~-~l~~el~~i~~~~~~d~vllVvDa~~g~~--~~ 230 (494)
..+...+.+.......||++|||+||.... .. .... .+.... ...+++|+++..+.- ..
T Consensus 83 p~~aa~~~~~~i~~~~i~~~~~~~l~~~~D~vlIEgaggl~~p~~~~~~~a---dla~~l-~~pviLV~~~~~~~i~~~~ 158 (228)
T 3of5_A 83 PHIIAAKTKVDISIENLKQFIEDKYNQDLDILFIEGAGGLLTPYSDHTTQL---DLIKAL-QIPVLLVSAIKVGCINHTL 158 (228)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHGGGGSSCSEEEEEEEEETTCBSSSSCBHH---HHHHHH-TCCEEEEEECSTTHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHccCCEEEEECCCccccccccchhHH---HHHHHc-CCCEEEEEcCCcchHHHHH
Confidence 112233334431236899999999874311 11 0111 111111 245788999876531 12
Q ss_pred HHHHHH-hccCCeeEEEEeCccCCCC-ccchhHHH-HhcCCCeE
Q 011076 231 DQAQAF-KQSVSVGAVIVTKMDGHAK-GGGALSAV-AATKSPVI 271 (494)
Q Consensus 231 ~~~~~f-~~~~~i~~vVltK~D~~~~-~g~~ls~~-~~~g~Pi~ 271 (494)
.....+ ...+++.++|+|+++.... .......+ ..++.|+.
T Consensus 159 ~~~~~l~~~~~~i~GvIlN~~~~~~~~~~~~~~~l~~~~g~pvL 202 (228)
T 3of5_A 159 LTINELNRHNIKLAGWIANCNDSNIKYIDEQINTIEELSGYKCS 202 (228)
T ss_dssp HHHHHHHHTTCCEEEEEEEECCTTCSCHHHHHHHHHHHHSCCCS
T ss_pred HHHHHHHhCCCcEEEEEEECcCCcchhhHHHHHHHHHhhCCCEE
Confidence 222222 3446788999999987532 22223333 34677654
No 245
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.43 E-value=2.7e-07 Score=97.98 Aligned_cols=66 Identities=20% Similarity=0.362 Sum_probs=38.1
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcc---------cHHHHHHHHh-ccCCeeEEEEeCccC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---------AAFDQAQAFK-QSVSVGAVIVTKMDG 252 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~---------~~~~~~~~f~-~~~~i~~vVltK~D~ 252 (494)
+..+.|+||||..... ..+ +..+..+|.+++|+|++.+. ...+.+.... ..++...+|+||+|.
T Consensus 120 ~~~~~iiDtPGh~~f~----~~~--~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl 193 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYV----TNM--INGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDE 193 (467)
T ss_dssp SEEEEECCCCC-----------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTS
T ss_pred CeEEEEEECCCcHHHH----HHH--HhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccC
Confidence 5678999999975322 122 22345789999999998762 2233222222 234424889999998
Q ss_pred CC
Q 011076 253 HA 254 (494)
Q Consensus 253 ~~ 254 (494)
..
T Consensus 194 ~~ 195 (467)
T 1r5b_A 194 PS 195 (467)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 246
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.42 E-value=1.3e-06 Score=83.23 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=81.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..|+|+|.+||||||+++.+.. +.- .+.|.| ..++.++...... ..
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~-----~~f-----~~~~~~-----------Tig~d~~~k~~~~-------------~~ 59 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMY-----DSF-----DNTYQA-----------TIGIDFLSKTMYL-------------ED 59 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH-----SCC-----C---------------------CEEEEEEC-------------SS
T ss_pred EEEEEECcCCcCHHHHHHHHHh-----CCC-----CCCcCC-----------ccceEEEEEEEEe-------------cc
Confidence 5699999999999999999872 110 011111 0111111100000 01
Q ss_pred cCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHH---HHh-ccCCeeEEEEeCccCCC
Q 011076 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQ---AFK-QSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~---~f~-~~~~i~~vVltK~D~~~ 254 (494)
..+.+-|.||||...... +.. .....++.+++|.|.+...... .... ... ..++ ..+|.||+|...
T Consensus 60 ~~v~l~iwDtaGqe~~~~-----l~~-~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~p-iilVgNK~Dl~~ 132 (216)
T 4dkx_A 60 RTIRLQLWDTAGLERFRS-----LIP-SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI-IMLVGNKTDLAD 132 (216)
T ss_dssp CEEEEEEECCSCTTTCGG-----GHH-HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECTTCGG
T ss_pred eEEEEEEEECCCchhhhh-----HHH-HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCe-EEEEeeccchHh
Confidence 245678999999754321 111 1234789999999987543211 1111 111 2233 488999999854
Q ss_pred Ccc----chhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 255 KGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 255 ~~g----~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
... .+...+...+ .+...+|++.|.| ++++++.+.+.+.
T Consensus 133 ~r~V~~~e~~~~a~~~~------------------~~~~e~SAktg~n-V~e~F~~i~~~i~ 175 (216)
T 4dkx_A 133 KRQVSIEEGERKAKELN------------------VMFIETSAKAGYN-VKQLFRRVAAALP 175 (216)
T ss_dssp GCCSCHHHHHHHHHHHT------------------CEEEEEBTTTTBS-HHHHHHHHHHHC-
T ss_pred cCcccHHHHhhHHHHhC------------------CeeEEEeCCCCcC-HHHHHHHHHHHHH
Confidence 311 1111121111 1223489999999 9999999988774
No 247
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.41 E-value=6.6e-07 Score=93.70 Aligned_cols=156 Identities=17% Similarity=0.241 Sum_probs=86.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhcc-CcceeccCCCCChHHHHHHHHHHHh
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKA-KIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~-~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
..|+|+|++||||||+++.|+ +.++.+ +.-+ .++.. .+-+.. ..
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Ls------g~~~~i-~~~~-----------ftTl~p~~G~V~-~~---------------- 202 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMT------RAHPKI-APYP-----------FTTLSPNLGVVE-VS---------------- 202 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHC------SSCCEE-CCCT-----------TCSSCCEEEEEE-CS----------------
T ss_pred CEEEEECCCCCcHHHHHHHHH------cCCccc-cCcc-----------cceecceeeEEE-ec----------------
Confidence 358999999999999999998 665532 2211 11111 111111 00
Q ss_pred ccCCcEEEEeCCCCCchhHH---HHHHHHHHHHhcCCCEEEEEecCC-CcccHHH----HHHHHhcc--CCeeEEEEeCc
Q 011076 181 KENCDLIIVDTSGRHKQEAA---LFEEMRQVSEATNPDLVIFVMDSS-IGQAAFD----QAQAFKQS--VSVGAVIVTKM 250 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~---l~~el~~i~~~~~~d~vllVvDa~-~g~~~~~----~~~~f~~~--~~i~~vVltK~ 250 (494)
....+.+.||||....... +.... +.....++.+++|+|.+ .....++ +...+... ..+..+|+||+
T Consensus 203 -~~~~~~l~DtpGli~~a~~~~~L~~~f--l~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKl 279 (416)
T 1udx_A 203 -EEERFTLADIPGIIEGASEGKGLGLEF--LRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKV 279 (416)
T ss_dssp -SSCEEEEEECCCCCCCGGGSCCSCHHH--HHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECC
T ss_pred -CcceEEEEeccccccchhhhhhhhHHH--HHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECC
Confidence 1256899999998432100 10111 12234679999999986 1111111 11222111 13348899999
Q ss_pred cCCCCccchhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhCC
Q 011076 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (494)
Q Consensus 251 D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~~ 312 (494)
|.... ..+.... +.+.+ .-.+..++|+..+.| ++.|++.+.+.+.
T Consensus 280 Dl~~~--~~~~~l~------------~~l~~--~g~~vi~iSA~~g~g-i~eL~~~i~~~l~ 324 (416)
T 1udx_A 280 DLLEE--EAVKALA------------DALAR--EGLAVLPVSALTGAG-LPALKEALHALVR 324 (416)
T ss_dssp TTSCH--HHHHHHH------------HHHHT--TTSCEEECCTTTCTT-HHHHHHHHHHHHH
T ss_pred ChhhH--HHHHHHH------------HHHHh--cCCeEEEEECCCccC-HHHHHHHHHHHHH
Confidence 98654 2222111 01100 012557789999999 9999999988774
No 248
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.40 E-value=2.4e-07 Score=85.94 Aligned_cols=150 Identities=14% Similarity=0.064 Sum_probs=78.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceec-cCCCCChHHHHHHHHHHHh
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG-SYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~-~~~~~dp~~i~~~~l~~~~ 180 (494)
..|+++|++||||||+++.|+ |........ + ..++++.. ... +.
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~------~~~~~~~~~----~-----------t~~~~~~~~~i~--------------~~ 50 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFT------RNEFNLESK----S-----------TIGVEFATRSIQ--------------VD 50 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHH------HSCCCC-------C-----------CCSCEEEEEEEE--------------ET
T ss_pred EEEEEECcCCCCHHHHHHHHh------cCCCCCCCC----C-----------ccceeEEEEEEE--------------EC
Confidence 468999999999999999998 432211110 0 00111100 000 00
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHH---HHHHHHhc---cCCeeEEEEeCccCCC
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ---SVSVGAVIVTKMDGHA 254 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~---~~~~~f~~---~~~i~~vVltK~D~~~ 254 (494)
...+.+.|+||||...... +. ......++.+++|.|.+...... .....+.. .-.+..+|+||+|...
T Consensus 51 g~~~~~~i~Dt~g~~~~~~-----~~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 124 (199)
T 2f9l_A 51 GKTIKAQIWDTAGQERYRR-----IT-SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 124 (199)
T ss_dssp TEEEEEEEEECSSGGGTTC-----CC-HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred CEEEEEEEEECCCchhhhh-----hh-HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 0134567899999643211 00 01123578899999987533211 11222221 1223488999999854
Q ss_pred Cccc----hhHHHHhcCCCeEEeccccccccccccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 255 KGGG----ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 255 ~~g~----~ls~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
.... +..++...+ .+...+|++.+.| ++.+++.+.+.+
T Consensus 125 ~~~~~~~~a~~l~~~~~------------------~~~~d~Sal~~~~-i~~l~~~l~~~~ 166 (199)
T 2f9l_A 125 LRAVPTDEARAFAEKNN------------------LSFIETSALDSTN-VEEAFKNILTEI 166 (199)
T ss_dssp GCCSCHHHHHHHHHHTT------------------CEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred ccCcCHHHHHHHHHHcC------------------CeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 2111 111111111 1122378889998 888888887654
No 249
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.31 E-value=1.8e-06 Score=88.63 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=19.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYA 122 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA 122 (494)
...|+++|++|+||||+++.|.
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~ 58 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLF 58 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHh
Confidence 3458999999999999999987
No 250
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=98.30 E-value=1.4e-05 Score=78.13 Aligned_cols=147 Identities=16% Similarity=0.195 Sum_probs=80.9
Q ss_pred CeEEEEEcCC-CCcHHHHHHHHHHHHHhcCCceEEEEc---ccC-cchhHHHHHhhhhccC-cceeccCCCC--------
Q 011076 101 PSVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCA---DTF-RAGAFDQLKQNATKAK-IPFYGSYTES-------- 166 (494)
Q Consensus 101 ~~vI~lvG~~-GvGKTTl~~kLA~~l~~~g~kVaiVs~---D~~-r~~a~~qLk~~~~~~~-i~~~~~~~~~-------- 166 (494)
.+.++|+|.. ||||||++..|+.+|+++|++|...-+ ... .......+...+.... ...+......
T Consensus 26 m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~~~~~~D~~~~~~~~g~~~~~~~~~~~~p~sP~~aa~~ 105 (251)
T 3fgn_A 26 MTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARGDDDLAEVGRLAGVTQLAGLARYPQPMAPAAAAEH 105 (251)
T ss_dssp CEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCGGGTCCHHHHHHHHHCCCEEEEEEECSSSSCHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCCCCCCHHHHHHHHHcCCCCCCCCeeECCCCChHHHHHH
Confidence 4678889985 999999999999999999999998752 100 0012222222222110 0111100000
Q ss_pred -----ChHHHHHHHHHHHhccCCcEEEEeCCCCCch---hH-HHHHHHHHHHHhcCCCEEEEEecCCCccc--HHHHHHH
Q 011076 167 -----DPVRIAVEGVETFKKENCDLIIVDTSGRHKQ---EA-ALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQA 235 (494)
Q Consensus 167 -----dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~---~~-~l~~el~~i~~~~~~d~vllVvDa~~g~~--~~~~~~~ 235 (494)
...+...+.+..+ ...||++|||+||-... +. .... .+.... ...+++|+|+..+.- .......
T Consensus 106 ~~~~~~~~~~i~~~~~~l-~~~~D~vlIEGagGl~~pl~~~~~~~a---dla~~l-~~pVILV~~~~~g~i~~~~lt~~~ 180 (251)
T 3fgn_A 106 AGMALPARDQIVRLIADL-DRPGRLTLVEGAGGLLVELAEPGVTLR---DVAVDV-AAAALVVVTADLGTLNHTKLTLEA 180 (251)
T ss_dssp TTCCCCCHHHHHHHHHTT-CCTTCEEEEECSSSTTCEEETTTEEHH---HHHHHT-TCEEEEEECSSTTHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHH-HhcCCEEEEECCCCCcCCcCcccchHH---HHHHHc-CCCEEEEEcCCCccHHHHHHHHHH
Confidence 0112233333333 35899999999875421 11 1111 122222 356899999976531 2222333
Q ss_pred H-hccCCeeEEEEeCccC
Q 011076 236 F-KQSVSVGAVIVTKMDG 252 (494)
Q Consensus 236 f-~~~~~i~~vVltK~D~ 252 (494)
+ ...+++.++|+||+..
T Consensus 181 l~~~g~~i~GvIlN~v~~ 198 (251)
T 3fgn_A 181 LAAQQVSCAGLVIGSWPD 198 (251)
T ss_dssp HHHTTCCEEEEEEEEECS
T ss_pred HHhCCCCEEEEEEECCCC
Confidence 3 3457889999999964
No 251
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.27 E-value=3.9e-07 Score=93.90 Aligned_cols=122 Identities=9% Similarity=0.033 Sum_probs=64.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|.+||||||++|.|.......-.+...++. .+.+|+....+..
T Consensus 162 ~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~-----------~~gtT~~~~~~~~--------------------- 209 (368)
T 3h2y_A 162 DVYVVGCTNVGKSTFINRMIKEFSDETENVITTSH-----------FPGTTLDLIDIPL--------------------- 209 (368)
T ss_dssp CEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEEC-----------CC----CEEEEES---------------------
T ss_pred eEEEecCCCCChhHHHHHHHhhhccccccceecCC-----------CCCeecceEEEEe---------------------
Confidence 59999999999999999998543221122333444 2233433222111
Q ss_pred CCcEEEEeCCCCCchh---HHH-HHHHHHHHHhcCCCEEEEEecCCCc--ccHHHHHHHHhccCCeeEEEEeCccCCCCc
Q 011076 183 NCDLIIVDTSGRHKQE---AAL-FEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIVTKMDGHAKG 256 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~---~~l-~~el~~i~~~~~~d~vllVvDa~~g--~~~~~~~~~f~~~~~i~~vVltK~D~~~~~ 256 (494)
+..+.++||||..... +.+ .+++..+......+.+++++|+... .........+...-.+..+++||.|...+.
T Consensus 210 ~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 210 DEESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRT 289 (368)
T ss_dssp SSSCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEE
T ss_pred cCCeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccc
Confidence 2247999999986432 111 1223333323457788999998421 001000001111111248999999986543
No 252
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.24 E-value=5.4e-07 Score=83.24 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=20.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYA 122 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA 122 (494)
...|+++|++||||||+++.|+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~ 50 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFT 50 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHh
Confidence 3578999999999999999998
No 253
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=98.23 E-value=5.9e-05 Score=73.19 Aligned_cols=148 Identities=11% Similarity=0.135 Sum_probs=82.4
Q ss_pred CeEEEEEcC-CCCcHHHHHHHHHHHHHhcCCceEEEE-----cccC--cchhHHHH----Hhhh-hc--cC-cceeccCC
Q 011076 101 PSVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVC-----ADTF--RAGAFDQL----KQNA-TK--AK-IPFYGSYT 164 (494)
Q Consensus 101 ~~vI~lvG~-~GvGKTTl~~kLA~~l~~~g~kVaiVs-----~D~~--r~~a~~qL----k~~~-~~--~~-i~~~~~~~ 164 (494)
.+.++|+|. +|||||+++..|+.+|+++|++|+..- ++.. +......+ ...+ .. .. .|+.-...
T Consensus 21 ~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKPv~~g~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~p~~~~~p 100 (242)
T 3qxc_A 21 GHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYRYHKV 100 (242)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEECCEECSCCTTTCCCSHHHHHHHHHHTTCTTCCHHHHCCEECSSS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEeeeecCCcccCCCCchHHHHHHHHHHHhCCCChHHeeeEEECCC
Confidence 567889998 699999999999999999999999875 2211 11222222 2221 10 00 11111000
Q ss_pred ----------C---CChHHHHHHHHHHHhccCCcEEEEeCCCCCch---hHHHHHHHHHHHHhcCCCEEEEEecCCCcc-
Q 011076 165 ----------E---SDPVRIAVEGVETFKKENCDLIIVDTSGRHKQ---EAALFEEMRQVSEATNPDLVIFVMDSSIGQ- 227 (494)
Q Consensus 165 ----------~---~dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~---~~~l~~el~~i~~~~~~d~vllVvDa~~g~- 227 (494)
. ....+...+.+..+ ...||++|||+||-... +...... +.... ...+++|+++..+.
T Consensus 101 ~sp~~aa~~~g~~~~i~~~~I~~~~~~l-~~~~D~vlIEGagGl~~pl~~~~~~ad---lA~~l-~~pVILV~~~~lg~i 175 (242)
T 3qxc_A 101 SAPLIAQQEEDPNAPIDTDNLTQRLHNF-TKTYDLVIVEGAGGLCVPITLEENMLD---FALKL-KAKMLLISHDNLGLI 175 (242)
T ss_dssp SCHHHHHHHHCTTCCCCHHHHHHHHHHG-GGTCSEEEEECCSCTTCBSSSSCBHHH---HHHHH-TCEEEEEECCSTTHH
T ss_pred CChHHHHHHcCCCCcCCHHHHHHHHHHH-HhcCCEEEEECCCCccccccccchHHH---HHHHc-CCCEEEEEcCCCcHH
Confidence 0 01122233444443 35899999999875421 1111111 11211 24689999998762
Q ss_pred -cHHHHHHHHh-ccCCeeEEEEeCccCCC
Q 011076 228 -AAFDQAQAFK-QSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 228 -~~~~~~~~f~-~~~~i~~vVltK~D~~~ 254 (494)
........+. ..++ .++|+|+++...
T Consensus 176 ~~~~lt~~~l~~~g~~-~GvIlN~v~~~~ 203 (242)
T 3qxc_A 176 NDCLLNDFLLKSHQLD-YKIAINLKGNNT 203 (242)
T ss_dssp HHHHHHHHHHHTSSSC-EEEEECCCTTCC
T ss_pred HHHHHHHHHHHhCCCC-EEEEEeCCCCcc
Confidence 1122333443 3467 799999998653
No 254
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.22 E-value=2.3e-07 Score=86.84 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=24.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcC
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKG 129 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g 129 (494)
+++++|++||||||++..|+..+...|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 589999999999999999999988556
No 255
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.21 E-value=3.1e-06 Score=82.59 Aligned_cols=42 Identities=26% Similarity=0.359 Sum_probs=37.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~ 142 (494)
+.+|+|+|+|||||||++..|+.+|...|+.+.+++.|.+|.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~ 45 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRE 45 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHH
Confidence 568999999999999999999999988898888788887653
No 256
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.21 E-value=1.7e-07 Score=96.61 Aligned_cols=119 Identities=12% Similarity=0.070 Sum_probs=65.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~~ 182 (494)
.|+++|.+||||||++|.|........ +.+.++. .+.+|+....+..
T Consensus 164 ~i~~vG~~nvGKStliN~L~~~~~~~~-~~~~~~~-----------~~gtT~~~~~~~~--------------------- 210 (369)
T 3ec1_A 164 DVYVVGCTNVGKSTFINRIIEEATGKG-NVITTSY-----------FPGTTLDMIEIPL--------------------- 210 (369)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHHTT-CCCEEEE-----------CTTSSCEEEEEEC---------------------
T ss_pred cEEEEcCCCCchHHHHHHHHhhccCCc-cceeecC-----------CCCeEEeeEEEEe---------------------
Confidence 599999999999999999996544322 3344444 2334433222111
Q ss_pred CCcEEEEeCCCCCchh---HHHH-HHHHHHHHhcCCCEEEEEecCCCc--ccHHHHHHHHhc-cCCeeEEEEeCccCCCC
Q 011076 183 NCDLIIVDTSGRHKQE---AALF-EEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQ-SVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~---~~l~-~el~~i~~~~~~d~vllVvDa~~g--~~~~~~~~~f~~-~~~i~~vVltK~D~~~~ 255 (494)
+..+.+|||||..... +.+. +++..+......+.+++++++... .........+.. ..+ ..+++||.|...+
T Consensus 211 ~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~-~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 211 ESGATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRS-FVCYMANELTVHR 289 (369)
T ss_dssp STTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEE-EEEEECTTSCEEE
T ss_pred CCCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCce-EEEEecCCccccc
Confidence 2246999999986432 1111 122222222457889999998421 001100001111 123 4899999998654
No 257
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.20 E-value=1.3e-05 Score=79.54 Aligned_cols=66 Identities=20% Similarity=0.290 Sum_probs=49.9
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc
Q 011076 68 GHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (494)
Q Consensus 68 ~~~~~~~i~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~ 142 (494)
.+++ +.+.+++.+.+..+++... ....+.+|+|+|+|||||||++..|+..+. .....|+.|.+|.
T Consensus 6 ~~s~-~~~~~~~~~~~~~~l~~~~-----~~~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D~~R~ 71 (287)
T 1gvn_B 6 NFTD-KQFENRLNDNLEELIQGKK-----AVESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDTFKQ 71 (287)
T ss_dssp CCCH-HHHHHHHHHHHHHHHTTCC-----CCSSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHHHHT
T ss_pred CCCH-HHHHHHHHHHHHHHhcccc-----CCCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechHhHH
Confidence 4455 5677888888888887532 233478899999999999999999986542 2467889998864
No 258
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.15 E-value=3.6e-06 Score=86.73 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYY 124 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~ 124 (494)
.|+++|+|||||||+++.|...
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999843
No 259
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.15 E-value=1.7e-06 Score=90.67 Aligned_cols=59 Identities=12% Similarity=0.154 Sum_probs=35.2
Q ss_pred EEEEEecCCCcccH--HHHHHHHhccCCeeEEEEeCccCCCCcc--chhHH----HHhcCCCeEEecc
Q 011076 216 LVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHAKGG--GALSA----VAATKSPVIFIGT 275 (494)
Q Consensus 216 ~vllVvDa~~g~~~--~~~~~~f~~~~~i~~vVltK~D~~~~~g--~~ls~----~~~~g~Pi~fi~~ 275 (494)
.++||+|+..+... ...++.+....++ ++|+||+|..+... ..... +...|+||.|++.
T Consensus 151 ~v~fI~d~~~~l~~~Dieilk~L~~~~~v-I~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLDLVTMKKLDSKVNI-IPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp EEEEECCCC---CHHHHHHHHHTCSCSEE-EEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHhhCCCE-EEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 37788888765443 3456666544455 89999999865432 11111 2346899999984
No 260
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=98.15 E-value=3.9e-06 Score=77.19 Aligned_cols=40 Identities=30% Similarity=0.405 Sum_probs=36.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~ 140 (494)
..++.|+|++||||||++.+|+.+|..+|++|+++..|+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 4589999999999999999999999999999999998764
No 261
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.12 E-value=3.2e-06 Score=78.45 Aligned_cols=163 Identities=17% Similarity=0.144 Sum_probs=81.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc-CcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT-FRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~-~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
.+++++|++|+||||++..++..+..+|++|.++..-. .|.+. .....+.++...... ..++.++ ++.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~----~~i~s~~g~~~~~~~-~~~~~~~----~~~~~ 74 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHS----TMIVSHSGNGVEAHV-IERPEEM----RKYIE 74 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CC----CEECC----CEECEE-ESSGGGG----GGGCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCc----ccEEecCCCceeeEE-ECCHHHH----HHHhc
Confidence 47889999999999999999999988899999886521 02110 111222232211100 0111111 11221
Q ss_pred ccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHHHHHHHhccCCeeEEEEeCccCCC-Ccc--
Q 011076 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHA-KGG-- 257 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~~~~~f~~~~~i~~vVltK~D~~~-~~g-- 257 (494)
.++|+|+||.+.+...+ +.+.+..+... ....++.=.+...-.........+..... . ++|++... ..|
T Consensus 75 -~~~dvviIDE~Q~~~~~--~~~~l~~l~~~-~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad--~--v~~l~~ic~~cg~~ 146 (184)
T 2orw_A 75 -EDTRGVFIDEVQFFNPS--LFEVVKDLLDR-GIDVFCAGLDLTHKQNPFETTALLLSLAD--T--VIKKKAVCHRCGEY 146 (184)
T ss_dssp -TTEEEEEECCGGGSCTT--HHHHHHHHHHT-TCEEEEEEESBCTTSCBCHHHHHHHHHCS--E--EEECCBCCTTTCCS
T ss_pred -CCCCEEEEECcccCCHH--HHHHHHHHHHC-CCCEEEEeeccccccCCccchHHHHHHhh--h--eEEeeeecCCCCCe
Confidence 36899999999876432 44455444433 22222222222200011121111111111 1 25665544 345
Q ss_pred -chhHHHHhcCCCeEEecccccccc
Q 011076 258 -GALSAVAATKSPVIFIGTGEHMDE 281 (494)
Q Consensus 258 -~~ls~~~~~g~Pi~fi~~Ge~i~~ 281 (494)
+..+.....+.|+.+||.+|....
T Consensus 147 ~a~~~~r~~~~~~~~~ig~~~~Y~~ 171 (184)
T 2orw_A 147 NATLTLKVAGGEEEIDVGGQEKYIA 171 (184)
T ss_dssp CBCEEEECSSCSCSCCCCSTTTEEE
T ss_pred eceeEEEEcCCCCEEEECCCCcEEE
Confidence 555655556788888887775543
No 262
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.07 E-value=6.2e-06 Score=75.30 Aligned_cols=37 Identities=27% Similarity=0.243 Sum_probs=32.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH-hcCCceEEEEc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ-KKGWKPALVCA 137 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~-~~g~kVaiVs~ 137 (494)
...++|+|++|+||||++..++..+. ..|+.+..++.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 34699999999999999999999997 67888888776
No 263
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.06 E-value=4.7e-05 Score=71.31 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=34.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~ 140 (494)
.+++++|++|+||||++..++..+...+.+|.+++.+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~ 62 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES 62 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC
Confidence 479999999999999999999888877889999998763
No 264
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.06 E-value=3.7e-06 Score=95.46 Aligned_cols=64 Identities=16% Similarity=0.237 Sum_probs=42.5
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH--HHH-HHhccCCeeEEEEeCccCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD--QAQ-AFKQSVSVGAVIVTKMDGH 253 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~--~~~-~f~~~~~i~~vVltK~D~~ 253 (494)
++.+.|+||||.......... ....+|.+++|+|++.+..... ... .....+++ .+|+||+|..
T Consensus 97 ~~~i~liDTPG~~df~~~~~~------~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTA------ALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKP-VVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHH------HHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEE-EEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHH------HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCe-EEEEECCCcc
Confidence 577899999998765433222 2236899999999998754332 122 22333555 8999999975
No 265
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.05 E-value=1e-05 Score=90.19 Aligned_cols=128 Identities=22% Similarity=0.152 Sum_probs=70.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH---hcCC---ceEEEEcccCcchhHHHHHhhhhc-cCcceeccCCCCChHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ---KKGW---KPALVCADTFRAGAFDQLKQNATK-AKIPFYGSYTESDPVRIAV 173 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~---~~g~---kVaiVs~D~~r~~a~~qLk~~~~~-~~i~~~~~~~~~dp~~i~~ 173 (494)
-+.|+++|..++|||||+-.|..+-. +.|. +....|.+. .||-+-.+-. ..+.++...+.
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~-----~E~eRGITI~s~~~s~~~~~~~-------- 79 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMV-----QEQERGITITSAAVTTFWKGSR-------- 79 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC-----------------------------CCEEEEEECCTT--------
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChH-----HHHHcCCeEEeeeEEEEeccCc--------
Confidence 36799999999999999999986543 2221 111111110 0111111100 11111111110
Q ss_pred HHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCcccHHH--HH-HHHhccCCeeEEEEeCc
Q 011076 174 EGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD--QA-QAFKQSVSVGAVIVTKM 250 (494)
Q Consensus 174 ~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g~~~~~--~~-~~f~~~~~i~~vVltK~ 250 (494)
.+.++|-+-||||||......+....| + -.|.+++|+|+..|..... .. .+....+|+ .+++||+
T Consensus 80 -----~~~~~~~iNlIDTPGHvDF~~Ev~~aL----r--~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~-i~~iNKi 147 (709)
T 4fn5_A 80 -----GQYDNYRVNVIDTPGHVDFTIEVERSL----R--VLDGAVVVFCGTSGVEPQSETVWRQANKYGVPR-IVYVNKM 147 (709)
T ss_dssp -----SCSCCEEEEEECCCSCTTCHHHHHHHH----H--HCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCE-EEEEECS
T ss_pred -----CCCCCEEEEEEeCCCCcccHHHHHHHH----H--HhCeEEEEEECCCCCchhHHHHHHHHHHcCCCe-EEEEccc
Confidence 001256788999999987665543333 2 3699999999998865432 22 234455776 9999999
Q ss_pred cCC
Q 011076 251 DGH 253 (494)
Q Consensus 251 D~~ 253 (494)
|..
T Consensus 148 Dr~ 150 (709)
T 4fn5_A 148 DRQ 150 (709)
T ss_dssp SST
T ss_pred ccc
Confidence 974
No 266
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.03 E-value=2.1e-05 Score=78.56 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYA 122 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA 122 (494)
....|+++|++||||||+++.|+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~ 39 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLF 39 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHh
Confidence 34568999999999999999988
No 267
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.03 E-value=5.3e-05 Score=76.15 Aligned_cols=172 Identities=19% Similarity=0.237 Sum_probs=89.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHH-Hhhh----hccCcceeccCCCCChHHHHHHHH
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQL-KQNA----TKAKIPFYGSYTESDPVRIAVEGV 176 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qL-k~~~----~~~~i~~~~~~~~~dp~~i~~~~l 176 (494)
.+++++|+.||||||+++.|+... .|++++++.+|.....--.++ .... +..+.. ..+....+........+
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gC-icc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGC-ICCSRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSC-EEECTTSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCc-eEEcccHHHHHHHHHHH
Confidence 578999999999999999998653 588999999985432110000 0000 000000 00011122222221222
Q ss_pred HHHhcc--CCcEEEEeCCCCCchhHHHHHHH---HHHHHhcCCCEEEEEecCCCcccHHHH-HHHHhccCCeeEEEEeCc
Q 011076 177 ETFKKE--NCDLIIVDTSGRHKQEAALFEEM---RQVSEATNPDLVIFVMDSSIGQAAFDQ-AQAFKQSVSVGAVIVTKM 250 (494)
Q Consensus 177 ~~~~~~--~~dvIIIDTaG~~~~~~~l~~el---~~i~~~~~~d~vllVvDa~~g~~~~~~-~~~f~~~~~i~~vVltK~ 250 (494)
..+... .+|++++|+.|..... .+...+ .........+.++-++|+......... .....+....+.+|+||.
T Consensus 82 ~~~q~~~~~~~~~v~E~~~l~~p~-~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k~ 160 (318)
T 1nij_A 82 DNLDKGNIQFDRLVIECTGMADPG-PIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKT 160 (318)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHH-HHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEECT
T ss_pred hHHhcCCCCCCEEEEeCCCCCCHH-HHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEECc
Confidence 111223 3599999999986433 222222 122223345667888898643222211 111122234467888999
Q ss_pred cCCCCccchhHHHHh--cCCCeEEecccc
Q 011076 251 DGHAKGGGALSAVAA--TKSPVIFIGTGE 277 (494)
Q Consensus 251 D~~~~~g~~ls~~~~--~g~Pi~fi~~Ge 277 (494)
|.............. .+.+|.+++.|.
T Consensus 161 dl~de~~~l~~~l~~l~~~~~ii~~sh~~ 189 (318)
T 1nij_A 161 DVAGEAEKLHERLARINARAPVYTVTHGD 189 (318)
T ss_dssp TTCSCTHHHHHHHHHHCSSSCEEECCSSC
T ss_pred ccCCHHHHHHHHHHHhCCCCeEEEecccC
Confidence 986432233333322 467888888764
No 268
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.02 E-value=5.6e-05 Score=70.47 Aligned_cols=35 Identities=29% Similarity=0.227 Sum_probs=31.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~ 139 (494)
.+++++|++|+||||++..++. ..|.+|..++.+.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred EEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence 4799999999999999999997 5588999999875
No 269
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.01 E-value=5.6e-05 Score=71.69 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=35.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~ 140 (494)
..+++++|+||+||||++..++..+...|.+|..++.+..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 3479999999999999999999998888999999998753
No 270
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.00 E-value=1e-05 Score=78.63 Aligned_cols=82 Identities=12% Similarity=0.011 Sum_probs=46.3
Q ss_pred CCCEEEEEecCCCc--ccHHH---HHHHHh-----ccCCeeEEEEeCccCCCCccchhHHHHhcCCCeEEeccccccccc
Q 011076 213 NPDLVIFVMDSSIG--QAAFD---QAQAFK-----QSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEF 282 (494)
Q Consensus 213 ~~d~vllVvDa~~g--~~~~~---~~~~f~-----~~~~i~~vVltK~D~~~~~g~~ls~~~~~g~Pi~fi~~Ge~i~~l 282 (494)
.+|.+++|+|++.. ..... ....+. ...++ .+|.||+|...... .+.. +.+..-
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~pi-ilV~NK~Dl~~~~~--v~~~-------------~~~~~~ 225 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPI-VVVLTKCDEGVERY--IRDA-------------HTFALS 225 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCE-EEEEECGGGBCHHH--HHHH-------------HHHHHT
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCE-EEEEEcccccccHH--HHHH-------------HHHHHh
Confidence 47999999999764 32211 122221 23455 89999999853211 1111 111000
Q ss_pred cccCccchhhcccCCCCchHHHHHHHHhC
Q 011076 283 EVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (494)
Q Consensus 283 ~~f~p~~~vs~~~G~Gdi~~L~e~i~~~~ 311 (494)
....+...+|++.|.| ++.+++.+.+.+
T Consensus 226 ~~~~~~~e~SAk~g~g-v~elf~~l~~~l 253 (255)
T 3c5h_A 226 KKNLQVVETSARSNVN-VDLAFSTLVQLI 253 (255)
T ss_dssp SSSCCEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCC-HHHHHHHHHHHh
Confidence 0123456689999999 999998886643
No 271
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.99 E-value=9.5e-06 Score=84.25 Aligned_cols=104 Identities=16% Similarity=0.032 Sum_probs=45.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCCh-HHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDP-VRIAVEGVETF 179 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp-~~i~~~~l~~~ 179 (494)
+..|+++|+|||||||+++.|+ |.++ .++. .+.+|..-. .+.....+. ...........
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Lt------g~~~-~~~~-----------~p~tTi~p~--~g~v~v~~~r~~~l~~~~~p~ 81 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLT------NSQA-SAEN-----------FPFCTIDPN--ESRVPVPDERFDFLCQYHKPA 81 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHH------C-------------------------CCS--EEEEECCCHHHHHHHHHHCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHH------CCCc-cccC-----------CCccccCce--eEEEEECCccceeeccccCcc
Confidence 3459999999999999999999 7655 3333 222222100 000001111 11000000000
Q ss_pred hccCCcEEEEeCCCCCchhHHHHHHH--HHHHHhcCCCEEEEEecCCC
Q 011076 180 KKENCDLIIVDTSGRHKQEAALFEEM--RQVSEATNPDLVIFVMDSSI 225 (494)
Q Consensus 180 ~~~~~dvIIIDTaG~~~~~~~l~~el--~~i~~~~~~d~vllVvDa~~ 225 (494)
..-...+.++||||....... .+.+ ..+.....+|.+++|+|++.
T Consensus 82 ~~~~~~i~lvDtpGl~~~as~-~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 82 SKIPAFLNVVDIAGLVKGAHN-GQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp EEECCEEEEEECCC------------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cccccccEEEECCCcccccch-hhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 011346899999998753321 1111 11233457899999999963
No 272
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.97 E-value=8.4e-06 Score=80.85 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
.+..++++|.|||||||++|.|. |.+++.++.
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~------~~~~~~~~~ 150 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLA------KKNIAKTGD 150 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHH------TSCCC----
T ss_pred CCceEEEEecCCCchHHHHHHHh------cCceeecCC
Confidence 35679999999999999999999 887776665
No 273
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.93 E-value=0.0013 Score=69.16 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=35.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHh-cCCceEEEEccc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADT 139 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~-~g~kVaiVs~D~ 139 (494)
..+++++|+||+||||++..++..+.. .|.+|++++.+.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM 242 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 458999999999999999999999886 588999999865
No 274
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.90 E-value=4.7e-05 Score=72.97 Aligned_cols=101 Identities=13% Similarity=0.051 Sum_probs=61.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc--ccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA--DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~--D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~ 178 (494)
..+++++|++|+||||++..++..+..+|++|.++.. |. | +. ...+.+.++.+..... ....++.......
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~-r-~~----~~i~srlG~~~~~~~~-~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT-R-SI----RNIQSRTGTSLPSVEV-ESAPEILNYIMSN 84 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG-G-GC----SSCCCCCCCSSCCEEE-SSTHHHHHHHHST
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc-h-HH----HHHHHhcCCCcccccc-CCHHHHHHHHHHH
Confidence 4678899999999999999999999999999999954 33 2 21 1234555544322111 1122222111111
Q ss_pred HhccCCcEEEEeCCCCCchhHHHHHHHHHHHH
Q 011076 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSE 210 (494)
Q Consensus 179 ~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~ 210 (494)
.....+|+|+||-+-....+ ..+.+..+..
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~--~ve~l~~L~~ 114 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDR--ICEVANILAE 114 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTH--HHHHHHHHHH
T ss_pred hhCCCCCEEEEecCccCcHH--HHHHHHHHHh
Confidence 22246999999999876432 4444444443
No 275
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.88 E-value=9.9e-05 Score=75.86 Aligned_cols=89 Identities=19% Similarity=0.158 Sum_probs=56.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceec--cCCCCChHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG--SYTESDPVRIAVEGVET 178 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~--~~~~~dp~~i~~~~l~~ 178 (494)
..++.|.|+||+||||++..++..+.+.|.+|+.++++..-. ++ ++.+.+++... .....+ .+-+.+.+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~----~~--~a~~~g~d~~~l~i~~~~~-~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALD----PV--YARALGVNTDELLVSQPDN-GEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC----HH--HHHHTTCCGGGCEEECCSS-HHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChh----HH--HHHHcCCCHHHceeecCCc-HHHHHHHHHH
Confidence 347899999999999999999999998899999999974211 11 12222322100 011112 2222333333
Q ss_pred H-hccCCcEEEEeCCCCCc
Q 011076 179 F-KKENCDLIIVDTSGRHK 196 (494)
Q Consensus 179 ~-~~~~~dvIIIDTaG~~~ 196 (494)
+ +..++++||||+.+...
T Consensus 147 l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp HHTTTCCSEEEEECTTTCC
T ss_pred HHhcCCCCEEEEeChHHhc
Confidence 3 34579999999987653
No 276
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.87 E-value=3.8e-05 Score=75.61 Aligned_cols=128 Identities=16% Similarity=0.157 Sum_probs=63.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
..++++|++||||||+++.|+..+.-..-.+.+-..|..+ ...+..+.+.. . ++ .
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---------~~~~~~i~~v~---q-~~------------~ 57 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---------TVEIKAIGHVI---E-EG------------G 57 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCC---------CCSCCEEEESC---C----------------
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---------ceeeeeeEEEe---e-cC------------C
Confidence 3689999999999999999996554321122211111100 00111121111 0 00 0
Q ss_pred cCCcEEEEeCCCCCch------hHHHHHHHH----H-HHHh-----------cCCCEEEEEecCC-CcccHH--HHHHHH
Q 011076 182 ENCDLIIVDTSGRHKQ------EAALFEEMR----Q-VSEA-----------TNPDLVIFVMDSS-IGQAAF--DQAQAF 236 (494)
Q Consensus 182 ~~~dvIIIDTaG~~~~------~~~l~~el~----~-i~~~-----------~~~d~vllVvDa~-~g~~~~--~~~~~f 236 (494)
-...+-++||+|.... ...+...+. . .... ..+...++++|.. .+.+.. ..++.+
T Consensus 58 ~~~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L 137 (270)
T 3sop_A 58 VKMKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHL 137 (270)
T ss_dssp -CCEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHH
T ss_pred CcCCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHH
Confidence 1346789999997421 011211111 1 1111 1246678888865 554443 355666
Q ss_pred hccCCeeEEEEeCccCCCC
Q 011076 237 KQSVSVGAVIVTKMDGHAK 255 (494)
Q Consensus 237 ~~~~~i~~vVltK~D~~~~ 255 (494)
.+..++ .+|+||+|..+.
T Consensus 138 ~~~~~v-I~Vi~K~D~lt~ 155 (270)
T 3sop_A 138 SKVVNI-IPVIAKADTMTL 155 (270)
T ss_dssp HTTSEE-EEEETTGGGSCH
T ss_pred HhcCcE-EEEEeccccCCH
Confidence 665444 889999998755
No 277
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.84 E-value=0.00014 Score=74.44 Aligned_cols=88 Identities=22% Similarity=0.197 Sum_probs=54.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc-CcchhHHHHHhhhhccCcceec--cCCCCChHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT-FRAGAFDQLKQNATKAKIPFYG--SYTESDPVRIAVEGVE 177 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~-~r~~a~~qLk~~~~~~~i~~~~--~~~~~dp~~i~~~~l~ 177 (494)
..++.|+|+||+||||++..++..+...|.+|+.|+.+. +++. .+.+.+++... .....+..++. ..+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~-------ra~rlgv~~~~l~i~~~~~~e~~l-~~~~ 132 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV-------YAKNLGVDLKSLLISQPDHGEQAL-EIVD 132 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-------HHHHHTCCGGGCEEECCSSHHHHH-HHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH-------HHHHcCCchhhhhhhhccCHHHHH-HHHH
Confidence 468999999999999999999999998899999998853 3321 22222322110 01111222222 2222
Q ss_pred H-HhccCCcEEEEeCCCCCc
Q 011076 178 T-FKKENCDLIIVDTSGRHK 196 (494)
Q Consensus 178 ~-~~~~~~dvIIIDTaG~~~ 196 (494)
. .+...+|+++||......
T Consensus 133 ~l~~~~~~dlvVIDSi~~l~ 152 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAALV 152 (356)
T ss_dssp HHHHTSCCSEEEEECTTTCC
T ss_pred HHhhhcCCCeEEehHhhhhc
Confidence 2 234678999999866543
No 278
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.82 E-value=7.3e-05 Score=76.56 Aligned_cols=88 Identities=22% Similarity=0.219 Sum_probs=56.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc-CcchhHHHHHhhhhccCccee--ccCCCCChHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT-FRAGAFDQLKQNATKAKIPFY--GSYTESDPVRIAVEGVE 177 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~-~r~~a~~qLk~~~~~~~i~~~--~~~~~~dp~~i~~~~l~ 177 (494)
..++.++|+||+||||++..++..+.+.|.+|+.++.+. +.+. .+.+.+++.. .... .+..+-+.+.+.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~-------~a~~~g~~~~~l~i~~-~~~~e~~~~~~~ 134 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI-------YARKLGVDIDNLLCSQ-PDTGEQALEICD 134 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-------HHHHTTCCGGGCEEEC-CSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHH-------HHHHcCCChhheeeeC-CCCHHHHHHHHH
Confidence 457999999999999999999999999899999999853 2221 1222222110 0011 112222333333
Q ss_pred HH-hccCCcEEEEeCCCCCc
Q 011076 178 TF-KKENCDLIIVDTSGRHK 196 (494)
Q Consensus 178 ~~-~~~~~dvIIIDTaG~~~ 196 (494)
.+ +..++++||||+.+...
T Consensus 135 ~l~~~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAALT 154 (356)
T ss_dssp HHHHHTCCSEEEEECGGGCC
T ss_pred HHHhccCCCEEEEcCHHHhc
Confidence 33 34679999999988754
No 279
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.82 E-value=0.00014 Score=76.15 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=21.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHH
Q 011076 98 KGKPSVIMFVGLQGSGKTTTCTKYA 122 (494)
Q Consensus 98 ~~~~~vI~lvG~~GvGKTTl~~kLA 122 (494)
.+....|+|+|++||||||+++.|+
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~ 52 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLF 52 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHT
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHh
Confidence 3445568999999999999999999
No 280
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.80 E-value=0.00012 Score=70.86 Aligned_cols=42 Identities=26% Similarity=0.339 Sum_probs=34.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcch
Q 011076 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (494)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~ 143 (494)
..+.+|+++|+|||||||++..|+..+ +..+.+++.|.+|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~~r~~ 71 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDSFRSQ 71 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGGGGTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHHHHHh
Confidence 346789999999999999999999655 335678899998763
No 281
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.78 E-value=0.0017 Score=68.14 Aligned_cols=116 Identities=13% Similarity=0.079 Sum_probs=64.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHh-cCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCC-CChH--HHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE-SDPV--RIAVEGV 176 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~-~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~-~dp~--~i~~~~l 176 (494)
..+++++|+||+||||++..+|...+. .|.+|+.++...-.......+ .+...+++....... -++. .....++
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~--~~~~~~i~~~~l~~g~l~~~~~~~~~~a~ 277 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRM--MCSEARIDMNRVRLGQLTDRDFSRLVDVA 277 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHH--HHHHTTCCTTTCCGGGCCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHH--HHHHcCCCHHHHhCCCCCHHHHHHHHHHH
Confidence 458999999999999999999999886 489999999964322111111 122233332111110 1111 1223334
Q ss_pred HHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCC
Q 011076 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS 224 (494)
Q Consensus 177 ~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~ 224 (494)
..+. ...+.+.|+|+... ..+...+..+.....++ ++|+|.-
T Consensus 278 ~~l~--~~~l~i~d~~~~s~--~~l~~~~~~l~~~~~~~--lIvID~l 319 (444)
T 2q6t_A 278 SRLS--EAPIYIDDTPDLTL--MEVRARARRLVSQNQVG--LIIIDYL 319 (444)
T ss_dssp HHHH--TSCEEEECCTTCBH--HHHHHHHHHHHHHSCCC--EEEEECG
T ss_pred HHHh--cCCEEEECCCCCCH--HHHHHHHHHHHHHcCCC--EEEEcCh
Confidence 4443 34677778776542 23444444444333443 6777763
No 282
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.76 E-value=0.00026 Score=70.94 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=68.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceecc------CCCCChHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS------YTESDPVRIAVE 174 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~------~~~~dp~~i~~~ 174 (494)
..+++++|+||+||||++..+|..++.+|.+|+.++...-.......+... ..+++.... .+..+... ...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~R~~~~--~~~i~~~~l~~~~~~l~~~~~~~-l~~ 144 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVT--AGSINAQKIKAARRDFASEDWGK-LSM 144 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHHHHHHH--HTTCCHHHHHSCHHHHCSSCHHH-HHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHH--HcCCCHHHHhcCCCCCCHHHHHH-HHH
Confidence 347999999999999999999999988899999999874322222222211 123321110 11122212 223
Q ss_pred HHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCC
Q 011076 175 GVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS 224 (494)
Q Consensus 175 ~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~ 224 (494)
+...+. ...+.+.|+|+.. -..+...+..+.....++..++|+|.-
T Consensus 145 a~~~l~--~~~i~i~d~~~~~--~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 145 AIGEIS--NSNINIFDKAGQS--VNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp HHHHHH--TSCEEEECCSCCB--HHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred HHHHHh--CCCEEEECCCCCC--HHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 333332 4577888888753 234444454444433455447888874
No 283
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.75 E-value=0.00038 Score=68.55 Aligned_cols=38 Identities=29% Similarity=0.289 Sum_probs=34.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhc-CCceEEEEccc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADT 139 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~-g~kVaiVs~D~ 139 (494)
.+++++|+||+||||++..++..+... |.+|.+++.+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 479999999999999999999998865 88999998865
No 284
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.74 E-value=0.00012 Score=78.76 Aligned_cols=45 Identities=29% Similarity=0.438 Sum_probs=39.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcch
Q 011076 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (494)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~ 143 (494)
..+.+|+++|+|||||||++.+|+.+|.-.+.++.+++.|.+|..
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~ 77 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRRE 77 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHH
Confidence 346789999999999999999999999888999999999887653
No 285
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.73 E-value=0.00017 Score=67.44 Aligned_cols=97 Identities=18% Similarity=0.151 Sum_probs=58.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc--ccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA--DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~--D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~ 178 (494)
..+++++|+.|+||||.+..++..+..+|++|+++.+ |. |.+. ....++.++....... .++. +.++.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~-r~~~----~~i~s~~g~~~~a~~~-~~~~----~i~~~ 77 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDN-RYSK----EDVVSHMGEKEQAVAI-KNSR----EILKY 77 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC------------CEEECTTSCEEECEEE-SSST----HHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCc-cchH----HHHHhhcCCceeeEee-CCHH----HHHHH
Confidence 4688999999999999999999999999999999973 43 2210 1223344432211111 1111 22222
Q ss_pred HhccCCcEEEEeCCCCCchhHHHHHHHHHHHH
Q 011076 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSE 210 (494)
Q Consensus 179 ~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~ 210 (494)
+. ..+|+|+||.+.+...+ ..+.+..+..
T Consensus 78 ~~-~~~dvViIDEaqfl~~~--~v~~l~~l~~ 106 (191)
T 1xx6_A 78 FE-EDTEVIAIDEVQFFDDE--IVEIVNKIAE 106 (191)
T ss_dssp CC-TTCSEEEECSGGGSCTH--HHHHHHHHHH
T ss_pred Hh-ccCCEEEEECCCCCCHH--HHHHHHHHHh
Confidence 22 35999999999886433 3444544433
No 286
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.70 E-value=6e-05 Score=82.56 Aligned_cols=74 Identities=22% Similarity=0.237 Sum_probs=41.7
Q ss_pred CCcEEEEeCCCCCch-----hHHHHHHHHHHHHh-c-C-CCEEEEEecCCCc---ccHHHHHHHHhccCCeeEEEEeCcc
Q 011076 183 NCDLIIVDTSGRHKQ-----EAALFEEMRQVSEA-T-N-PDLVIFVMDSSIG---QAAFDQAQAFKQSVSVGAVIVTKMD 251 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~-----~~~l~~el~~i~~~-~-~-~d~vllVvDa~~g---~~~~~~~~~f~~~~~i~~vVltK~D 251 (494)
..+++|+|.||+... +......+..+... . . ...+++|+++... +.+...+..+...-..+++|+||.|
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~D 225 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPD 225 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGG
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchh
Confidence 368999999986432 21222233333222 2 3 3566777776532 3445566666544445799999999
Q ss_pred CCCCc
Q 011076 252 GHAKG 256 (494)
Q Consensus 252 ~~~~~ 256 (494)
....+
T Consensus 226 lv~~g 230 (608)
T 3szr_A 226 LVDKG 230 (608)
T ss_dssp GSSSS
T ss_pred hcCcc
Confidence 87654
No 287
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.70 E-value=0.00038 Score=73.31 Aligned_cols=117 Identities=16% Similarity=0.149 Sum_probs=71.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceecc------CCCCChHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS------YTESDPVRIAVE 174 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~------~~~~dp~~i~~~ 174 (494)
...++++|+||+||||++..+|...+.+|.+|++++.+.-.......+. +...+++.... .+..+.. ....
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~~R~~--~~~~~i~~~~l~~g~~~l~~~~~~-~l~~ 273 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLI--VTAGSINAQKIKAARRDFASEDWG-KLSM 273 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHHHHHH--HHHSCCCHHHHHHTGGGTCCSCHH-HHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHH--HHHcCCCHHHHhcccCCCCHHHHH-HHHH
Confidence 4589999999999999999999999988999999999754332222221 12223321110 1122221 2223
Q ss_pred HHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCC
Q 011076 175 GVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS 224 (494)
Q Consensus 175 ~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~ 224 (494)
+...+. ...+.|.|+|+.. -..+...+..+.....++..++|+|.-
T Consensus 274 a~~~l~--~~~l~i~d~~~~s--~~~i~~~ir~l~~~~~~~~~lIVID~L 319 (444)
T 3bgw_A 274 AIGEIS--NSNINIFDKAGQS--VNYIWSKTRQTKRKNPGKRVIVMIDYL 319 (444)
T ss_dssp HHHHHH--TSCEEEECCSSCB--HHHHHHHHHHHHHHSCSSCEEEEEECS
T ss_pred HHHHHh--cCCEEEECCCCCC--HHHHHHHHHHHHHHhCCCCeEEEEecH
Confidence 344443 4577888888753 234544555554444566557889974
No 288
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.68 E-value=0.00038 Score=70.98 Aligned_cols=89 Identities=21% Similarity=0.169 Sum_probs=55.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceec--cCCCCChHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG--SYTESDPVRIAVEGVET 178 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~--~~~~~dp~~i~~~~l~~ 178 (494)
..++.++|+||+||||++..++..+.+.|.+|+.++.+...... .+.+.++.... .....+ .+-..+.+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~------~a~~lG~~~~~l~i~~~~~-~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE------YAKKLGVDTDSLLVSQPDT-GEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH------HHHHTTCCGGGCEEECCSS-HHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH------HHHHcCCCHHHeEEecCCC-HHHHHHHHHH
Confidence 35799999999999999999999999889999999987422111 12233322100 011112 2222222222
Q ss_pred H-hccCCcEEEEeCCCCCc
Q 011076 179 F-KKENCDLIIVDTSGRHK 196 (494)
Q Consensus 179 ~-~~~~~dvIIIDTaG~~~ 196 (494)
+ ....+++||||.+....
T Consensus 134 l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp HHTTTCCSEEEEECGGGCC
T ss_pred HHhcCCCCEEEEcChHhhc
Confidence 2 34579999999987654
No 289
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.67 E-value=3.5e-05 Score=83.87 Aligned_cols=29 Identities=34% Similarity=0.427 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEE
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPAL 134 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVai 134 (494)
+..+|+++|+|||||||++|.|+ |.++++
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~------g~~~~~ 65 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLA------GKKKGF 65 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHT------TCSSCS
T ss_pred CCcEEEEECCCCCCHHHHHHhHc------CCCCcc
Confidence 34679999999999999999999 776543
No 290
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.63 E-value=0.00017 Score=68.52 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=32.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH-hcCCceEEEEccc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ-KKGWKPALVCADT 139 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~-~~g~kVaiVs~D~ 139 (494)
..+++++|++||||||++..++.... ..+..+.+++.+.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 35799999999999999999996555 5677888887754
No 291
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.62 E-value=0.00014 Score=73.21 Aligned_cols=92 Identities=23% Similarity=0.304 Sum_probs=55.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhc------CCceEEEEccc-CcchhHHHHHhhhhccCcce---------eccCC
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK------GWKPALVCADT-FRAGAFDQLKQNATKAKIPF---------YGSYT 164 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~------g~kVaiVs~D~-~r~~a~~qLk~~~~~~~i~~---------~~~~~ 164 (494)
..++.++|+||+||||++..++...... +.+|+.++.+. +++. ++...+.+.+++. ....+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~---~l~~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWE---RIENMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH---HHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHH---HHHHHHHHhCCCHHHHhccEEEEeCCC
Confidence 3579999999999999999999876654 78999999864 4543 3333333333321 11111
Q ss_pred CCChHHHHHHHHHHHhc-cCCcEEEEeCCCCC
Q 011076 165 ESDPVRIAVEGVETFKK-ENCDLIIVDTSGRH 195 (494)
Q Consensus 165 ~~dp~~i~~~~l~~~~~-~~~dvIIIDTaG~~ 195 (494)
......+.......+.. .++++||||+....
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 00111122222223333 57888888887654
No 292
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.62 E-value=0.00032 Score=71.28 Aligned_cols=143 Identities=10% Similarity=0.095 Sum_probs=79.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCC-CCChH--HHHHHHHHH
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYT-ESDPV--RIAVEGVET 178 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~-~~dp~--~i~~~~l~~ 178 (494)
.+++++|+||+||||++..+|..++..|.+|++++.+.-.......+.. ...+++...... .-+.. .....+...
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls--~~~~v~~~~l~~g~Ls~~e~~~l~~a~~~ 124 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALS--DLTSINMHDLESGRLDDDQWENLAKCFDH 124 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHH--HHHCCCHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHH--HhhCCCHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999999899999999997533222222211 112222211100 11111 112233333
Q ss_pred HhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCC---c--------ccH---HHHHHHHhccCCeeE
Q 011076 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSI---G--------QAA---FDQAQAFKQSVSVGA 244 (494)
Q Consensus 179 ~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~---g--------~~~---~~~~~~f~~~~~i~~ 244 (494)
+. ..++.|.|+|+.. -..+...+..+... .+..-++|+|.-. + ++. ...++.+.+.+++.+
T Consensus 125 l~--~~~l~I~d~~~~s--i~~i~~~ir~l~~~-~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~vpV 199 (338)
T 4a1f_A 125 LS--QKKLFFYDKSYVR--IEQIRLQLRKLKSQ-HKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARELEIPI 199 (338)
T ss_dssp HH--HSCEEEECCTTCC--HHHHHHHHHHHHHH-CTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSCE
T ss_pred Hh--cCCeEEeCCCCCc--HHHHHHHHHHHHHh-cCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHcCCeE
Confidence 33 3467888998764 22344444433332 2356788888531 1 111 223445555566667
Q ss_pred EEEeCcc
Q 011076 245 VIVTKMD 251 (494)
Q Consensus 245 vVltK~D 251 (494)
++++.+-
T Consensus 200 i~lsQl~ 206 (338)
T 4a1f_A 200 IALVQLN 206 (338)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 7777664
No 293
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.61 E-value=0.00019 Score=64.03 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=32.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D 138 (494)
..++|+|++|+||||++..++..+...|+++..++..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~ 73 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAA 73 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH
Confidence 4699999999999999999999988778888777763
No 294
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.61 E-value=0.00045 Score=70.10 Aligned_cols=92 Identities=20% Similarity=0.253 Sum_probs=55.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHh------cCCceEEEEccc-CcchhHHHHHhhhhccCcc---------eeccCC
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK------KGWKPALVCADT-FRAGAFDQLKQNATKAKIP---------FYGSYT 164 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~------~g~kVaiVs~D~-~r~~a~~qLk~~~~~~~i~---------~~~~~~ 164 (494)
..++.|+|+||+||||++..++..... .+.+|+.++.+. +++ +++...+.+.+++ +....+
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~---~~l~~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRP---DRLRDIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCH---HHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCH---HHHHHHHHHcCCCHHHHHhceeEeecCC
Confidence 468999999999999999999987544 478999999864 343 3333333333332 111112
Q ss_pred CCChHHHHHHHHHHHhc--cCCcEEEEeCCCCC
Q 011076 165 ESDPVRIAVEGVETFKK--ENCDLIIVDTSGRH 195 (494)
Q Consensus 165 ~~dp~~i~~~~l~~~~~--~~~dvIIIDTaG~~ 195 (494)
......+.......+.. .++++||||+....
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l 231 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMAL 231 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHHH
Confidence 22222222222233333 56788888887654
No 295
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.60 E-value=1.5e-05 Score=82.71 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYA 122 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA 122 (494)
...++|+|+||||||||++.|+
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Lt 41 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAIT 41 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999999
No 296
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.60 E-value=5.2e-05 Score=69.44 Aligned_cols=43 Identities=40% Similarity=0.527 Sum_probs=38.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~ 142 (494)
++.+|+|+|++||||||++..|+.++...|.++.+++.|..|.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~ 54 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWART 54 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHH
Confidence 4578999999999999999999999998899999998876543
No 297
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.60 E-value=0.0003 Score=67.92 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=33.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~ 139 (494)
++.+|+|.|++||||||.+..|+.+|...|+++.++...|
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep 65 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREP 65 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCC
Confidence 4568999999999999999999999999999955554444
No 298
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.59 E-value=0.00075 Score=70.10 Aligned_cols=42 Identities=24% Similarity=0.256 Sum_probs=31.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHh------cCCceEEEEccc-Ccc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK------KGWKPALVCADT-FRA 142 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~------~g~kVaiVs~D~-~r~ 142 (494)
..++.|+|++|+||||++..|+..... .+.++..++... +++
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~ 226 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRP 226 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCH
Confidence 347999999999999999988755443 356788887753 444
No 299
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.56 E-value=0.00056 Score=68.39 Aligned_cols=42 Identities=36% Similarity=0.445 Sum_probs=33.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH------------hcC----CceEEEEccc-Ccc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ------------KKG----WKPALVCADT-FRA 142 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~------------~~g----~kVaiVs~D~-~r~ 142 (494)
..++.++|+||+||||++..++.... ..| .+|+.++.+. +++
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~ 156 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRP 156 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCH
Confidence 46899999999999999999997642 234 6899998864 444
No 300
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.55 E-value=0.00022 Score=67.41 Aligned_cols=39 Identities=23% Similarity=0.217 Sum_probs=30.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHh------cCCceEEEEccc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK------KGWKPALVCADT 139 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~------~g~kVaiVs~D~ 139 (494)
..+++|+|++|+||||++..++..... .+..+..++.+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 347999999999999999999975432 256788887754
No 301
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.54 E-value=0.00019 Score=67.15 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=36.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCc
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r 141 (494)
++.+|+|+|++||||||++..|+..+...|..+..|..|.|-
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH 62 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc
Confidence 356899999999999999999999888667788999988754
No 302
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.53 E-value=0.00027 Score=76.84 Aligned_cols=102 Identities=22% Similarity=0.240 Sum_probs=63.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhc--------cCcc--eeccCCCCChHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATK--------AKIP--FYGSYTESDPVR 170 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~--------~~i~--~~~~~~~~dp~~ 170 (494)
..++++.|+||+||||++..++..+...|++|.+++. +.++ .+.|...... .+.. .+. ....+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap-T~~A--a~~L~e~~~~~a~Tih~ll~~~~~~~~-~~~~~--- 276 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP-TGKA--ARRLGEVTGRTASTVHRLLGYGPQGFR-HNHLE--- 276 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES-SHHH--HHHHHHHHTSCEEEHHHHTTEETTEES-CSSSS---
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC-cHHH--HHHhHhhhcccHHHHHHHHcCCcchhh-hhhcc---
Confidence 4578999999999999999999999999999987765 3333 2333221110 0000 000 00001
Q ss_pred HHHHHHHHHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcC-CCEEEEEecCC
Q 011076 171 IAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATN-PDLVIFVMDSS 224 (494)
Q Consensus 171 i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~-~d~vllVvDa~ 224 (494)
...+|++|||.++..... ++.. +..++. ...+++|-|..
T Consensus 277 ----------~~~~dvlIIDEasml~~~--~~~~---Ll~~~~~~~~lilvGD~~ 316 (574)
T 3e1s_A 277 ----------PAPYDLLIVDEVSMMGDA--LMLS---LLAAVPPGARVLLVGDTD 316 (574)
T ss_dssp ----------CCSCSEEEECCGGGCCHH--HHHH---HHTTSCTTCEEEEEECTT
T ss_pred ----------cccCCEEEEcCccCCCHH--HHHH---HHHhCcCCCEEEEEeccc
Confidence 126899999999987543 3333 344443 34688888875
No 303
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.53 E-value=0.00016 Score=64.98 Aligned_cols=38 Identities=24% Similarity=0.318 Sum_probs=30.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~ 142 (494)
|.+|+|+|+|||||||++..|+.. .....+++.|.+|.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i~~d~~r~ 39 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAK----NPGFYNINRDDYRQ 39 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH----STTEEEECHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhh----cCCcEEecHHHHHH
Confidence 467999999999999999999852 23467788877654
No 304
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.51 E-value=0.00035 Score=65.40 Aligned_cols=38 Identities=21% Similarity=0.150 Sum_probs=28.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHh------cCCceEEEEcc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK------KGWKPALVCAD 138 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~------~g~kVaiVs~D 138 (494)
..+++++|++||||||++..|+..+.. .+..+..++.+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 458999999999999999999975543 23446666654
No 305
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.50 E-value=0.00025 Score=66.04 Aligned_cols=43 Identities=23% Similarity=0.237 Sum_probs=37.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~ 142 (494)
++.+|+++|++||||||++..|+..+...|.+|.+++.|.+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~ 63 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV 63 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccC
Confidence 3578999999999999999999999988888999998887543
No 306
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.47 E-value=7.6e-05 Score=73.13 Aligned_cols=29 Identities=28% Similarity=0.477 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEE
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs 136 (494)
..++++|.|||||||++|.|. |.++.-+.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~------~~~~~~~~ 128 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLK------GKRASSVG 128 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHH------TTCC----
T ss_pred hheEEeCCCCCCHHHHHHHHh------cccccccC
Confidence 369999999999999999999 76654443
No 307
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.46 E-value=0.00012 Score=67.33 Aligned_cols=39 Identities=26% Similarity=0.368 Sum_probs=35.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~ 139 (494)
..+++|+|++||||||++++|+..+...|++|+.+..|+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 357999999999999999999999998899999999865
No 308
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.42 E-value=0.00037 Score=65.28 Aligned_cols=39 Identities=13% Similarity=0.037 Sum_probs=34.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~ 139 (494)
+..++|+|++|+||||++..++..+...++++..++++.
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 346999999999999999999999998899999888844
No 309
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.42 E-value=0.00043 Score=62.42 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=29.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~ 142 (494)
..+|+++|++||||||++..|+..+ | ..+++.|..+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~---g--~~~i~~d~~~~ 44 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL---H--AAFLDGDFLHP 44 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH---T--CEEEEGGGGCC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh---C--cEEEeCccccc
Confidence 4689999999999999999999665 3 45778876653
No 310
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.42 E-value=0.00057 Score=63.23 Aligned_cols=37 Identities=27% Similarity=0.470 Sum_probs=30.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~ 142 (494)
+.+|+|+|++||||||++..|+..+ | ..+++.|.++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l---g--~~~i~~d~~~~ 54 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC---G--YPFIEGDALHP 54 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH---T--CCEEEGGGGCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---C--CEEEeCCcCcc
Confidence 5679999999999999999999766 3 56788887754
No 311
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.41 E-value=0.00012 Score=66.52 Aligned_cols=37 Identities=19% Similarity=0.316 Sum_probs=32.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D 138 (494)
.+|+|+|++||||||++..|+.+|...|+++..++.|
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 3689999999999999999999998889888888653
No 312
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.35 E-value=0.0011 Score=67.70 Aligned_cols=83 Identities=19% Similarity=0.182 Sum_probs=49.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhc-CCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~-g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
..+++++|++|||||||++.|+.++... +..+..+. |+..... .. ....++-..... +. .-..+++..+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e-d~~e~~~----~~--~~~~v~q~~~~~--~~-~~~~~~La~a 192 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE-DPIEFVH----ES--KKCLVNQREVHR--DT-LGFSEALRSA 192 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE-SSCCSCC----CC--SSSEEEEEEBTT--TB-SCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc-CcHHhhh----hc--cccceeeeeecc--cc-CCHHHHHHHH
Confidence 4589999999999999999999988765 55554443 3321100 00 000011011111 11 1123466777
Q ss_pred hccCCcEEEEeCCC
Q 011076 180 KKENCDLIIVDTSG 193 (494)
Q Consensus 180 ~~~~~dvIIIDTaG 193 (494)
...++|++++|-|-
T Consensus 193 L~~~PdvillDEp~ 206 (356)
T 3jvv_A 193 LREDPDIILVGEMR 206 (356)
T ss_dssp TTSCCSEEEESCCC
T ss_pred hhhCcCEEecCCCC
Confidence 77899999999986
No 313
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.35 E-value=0.00014 Score=72.57 Aligned_cols=39 Identities=28% Similarity=0.422 Sum_probs=33.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~ 140 (494)
..++|+|+||+||||++..++..+...+.++..++++.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 349999999999999999999999887888888887443
No 314
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.33 E-value=0.0033 Score=59.96 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=30.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEE
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALV 135 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiV 135 (494)
+..+|+|.|++||||||++..|+.+|.. |.+|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 4578999999999999999999999988 8777543
No 315
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.33 E-value=0.00017 Score=65.57 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=32.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D 138 (494)
.+|+|+|++||||||++..|+.+|...|.+...++.|
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 5799999999999999999999998878767777754
No 316
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.33 E-value=0.00045 Score=75.97 Aligned_cols=43 Identities=30% Similarity=0.348 Sum_probs=35.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHH
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQL 148 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qL 148 (494)
+.++.||||+|||||+..+..++.++|.+|++++. -..|.+.+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~---TN~AvD~i 249 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP---SNIAVDNL 249 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES---SHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC---chHHHHHH
Confidence 46788999999999999999999999999988876 34455444
No 317
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.32 E-value=0.0012 Score=64.52 Aligned_cols=39 Identities=18% Similarity=0.069 Sum_probs=31.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhc----------CCceEEEEccc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK----------GWKPALVCADT 139 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~----------g~kVaiVs~D~ 139 (494)
..+++|+|++|+||||++..++..+... +.+|+.++.+.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC
Confidence 4589999999999999999999877642 35777777643
No 318
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.30 E-value=0.00056 Score=63.40 Aligned_cols=37 Identities=32% Similarity=0.454 Sum_probs=29.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~ 142 (494)
+.+|+|+|++||||||++..|+..+ | ...++.|.++.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~---g--~~~i~~d~~~~ 65 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET---G--LEFAEADAFHS 65 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH---C--CEEEEGGGGSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh---C--CeEEccccccc
Confidence 5689999999999999999999766 4 35677776653
No 319
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.30 E-value=0.0019 Score=61.13 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=32.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEE
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs 136 (494)
...|+|.|++||||||.+..|+.+|...|++|..+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 468999999999999999999999999999985543
No 320
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.29 E-value=0.00099 Score=63.85 Aligned_cols=36 Identities=28% Similarity=0.407 Sum_probs=28.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhc----CCceEEEE
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK----GWKPALVC 136 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~----g~kVaiVs 136 (494)
...|+|.|++||||||.+..|+.+|... |++|.++.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 4689999999999999999999999987 99986443
No 321
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.28 E-value=0.0043 Score=59.14 Aligned_cols=72 Identities=13% Similarity=0.056 Sum_probs=42.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
+.-++|+|+||+||||++..++..+ +..+..+++..+.. .+ ...........+..+.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~~----------------~~----~~~~~~~~~~~~~~a~ 95 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFVE----------------VI----GGLGAARVRSLFKEAR 95 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTSS----------------SS----TTHHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHHh----------------hc----cChhHHHHHHHHHHHH
Confidence 4568999999999999999999765 45555566532211 00 0011122233344444
Q ss_pred ccCCcEEEEeCCCCC
Q 011076 181 KENCDLIIVDTSGRH 195 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~ 195 (494)
.....+++||-....
T Consensus 96 ~~~~~vl~iDeid~l 110 (262)
T 2qz4_A 96 ARAPCIVYIDEIDAV 110 (262)
T ss_dssp HTCSEEEEEECC---
T ss_pred hcCCeEEEEeCcchh
Confidence 455789999987664
No 322
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.28 E-value=0.002 Score=64.95 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=29.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
..+++|.|+||+||||++..++.. .|.+|..++.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 356789999999999999999876 5778888887
No 323
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.26 E-value=0.00077 Score=67.91 Aligned_cols=87 Identities=7% Similarity=0.041 Sum_probs=54.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhc--CCceEEEEcc-cCcchhHHHHHhhhhccCcceec--cCCCCChHHHHHHHH
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKK--GWKPALVCAD-TFRAGAFDQLKQNATKAKIPFYG--SYTESDPVRIAVEGV 176 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~--g~kVaiVs~D-~~r~~a~~qLk~~~~~~~i~~~~--~~~~~dp~~i~~~~l 176 (494)
.++.+.|+||+||||++..++..+++. |.+|+.|++. .+++. .+.+.+++.-. .....+...+..+.+
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-------ra~~lGvd~d~llv~~~~~~E~~~l~i~ 101 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-------YLRSMGVDPERVIHTPVQSLEQLRIDMV 101 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-------HHHHTTCCGGGEEEEECSBHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-------HHHHhCCCHHHeEEEcCCCHHHHHHHHH
Confidence 368999999999999999999988876 7899999884 33332 23333332110 011222222213333
Q ss_pred HH---HhccCCcEEEEeCCCCC
Q 011076 177 ET---FKKENCDLIIVDTSGRH 195 (494)
Q Consensus 177 ~~---~~~~~~dvIIIDTaG~~ 195 (494)
+. .+...+++|+||.-.-+
T Consensus 102 ~~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 102 NQLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHHHTCCTTCCEEEEEECSTTC
T ss_pred HHHHHhhccCceEEEEeccccc
Confidence 33 35567999999986654
No 324
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.26 E-value=0.0017 Score=61.58 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=32.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCC-ceEEEEcccC
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGW-KPALVCADTF 140 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~-kVaiVs~D~~ 140 (494)
...|+|.|++||||||.+..|+.+|...|+ .| ++.-.|.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v-~~~rep~ 42 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDM-VFTREPG 42 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE-EEEESSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcc-eeeeCCC
Confidence 357999999999999999999999999998 55 4444443
No 325
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.25 E-value=0.0024 Score=67.91 Aligned_cols=40 Identities=23% Similarity=0.118 Sum_probs=35.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhc-CCceEEEEcccC
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTF 140 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~-g~kVaiVs~D~~ 140 (494)
..++++.|+||+||||++..+|..++.. |.+|+.++.+.-
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s 282 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES 282 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC
Confidence 4579999999999999999999999886 999999999653
No 326
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.24 E-value=0.00054 Score=68.04 Aligned_cols=42 Identities=33% Similarity=0.293 Sum_probs=34.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHhcC--CceEEE-EcccC
Q 011076 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKG--WKPALV-CADTF 140 (494)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g--~kVaiV-s~D~~ 140 (494)
+++.+|+|+|++||||||++..|+..|...| .++.++ +.|.|
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 3577999999999999999999999998654 445544 99875
No 327
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.24 E-value=0.0014 Score=62.02 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=33.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH-HhcCCceEEEEccc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYH-QKKGWKPALVCADT 139 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l-~~~g~kVaiVs~D~ 139 (494)
..++.++|+||+||||++..+|... .+.|++|+.++.+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~ 69 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC
Confidence 3579999999999999999998765 45588999999874
No 328
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=97.23 E-value=0.0028 Score=64.47 Aligned_cols=137 Identities=13% Similarity=0.256 Sum_probs=84.7
Q ss_pred CeEEEEEcCC-CCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 101 PSVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 101 ~~vI~lvG~~-GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
.+.++++|-- .+||||++..|.+.++++|.++..+.+-.. .+ + ....+++. ..-..+.+..+++.+
T Consensus 152 ~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tgqt---g~--~---~~~~gi~~-----Dav~~df~aG~ve~~ 218 (349)
T 2obn_A 152 CRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQT---GV--M---LEGDGVAL-----DAVRVDFAAGAVEQM 218 (349)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCSHH---HH--H---HHSCSCCG-----GGSBHHHHHHHHHHH
T ss_pred ceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEeccch---hh--h---hhcCCcch-----hHHHHHHHhhhHHHH
Confidence 5679999985 999999999999999999999998765110 00 1 11222221 111122222222222
Q ss_pred ---hccCCcEEEEeCCCCCch-hHHHHHHHHHHHHhcCCCEEEEEecCCCccc-------------HHHHHHHHh-----
Q 011076 180 ---KKENCDLIIVDTSGRHKQ-EAALFEEMRQVSEATNPDLVIFVMDSSIGQA-------------AFDQAQAFK----- 237 (494)
Q Consensus 180 ---~~~~~dvIIIDTaG~~~~-~~~l~~el~~i~~~~~~d~vllVvDa~~g~~-------------~~~~~~~f~----- 237 (494)
..+++|+++|.-.|-.-. .... ...+....+|+.+++|.++..+.- .....+.+.
T Consensus 219 ~~~~~~~~d~vlVEGqGgl~~P~~~~---t~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l~~~~~~ 295 (349)
T 2obn_A 219 VMRYGKNYDILHIEGQGSLLHPGSTA---TLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGA 295 (349)
T ss_dssp HHHHTTTCSEEEECCCCCTTSTTCCT---HHHHHHHHCCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHHHHTTTT
T ss_pred HHHhccCCCEEEEeCCCcccCcChHh---HHHHHHHcCCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHHHHhhcc
Confidence 234799999999885321 1111 224556678999999999865422 233444442
Q ss_pred -ccCCeeEEEEeCccCC
Q 011076 238 -QSVSVGAVIVTKMDGH 253 (494)
Q Consensus 238 -~~~~i~~vVltK~D~~ 253 (494)
..+++.++++|..+..
T Consensus 296 ~~~~~V~Gi~lN~~~~~ 312 (349)
T 2obn_A 296 FGTVPVVGIALNTAHLD 312 (349)
T ss_dssp SCCCCEEEEEEECTTSC
T ss_pred CCCCcEEEEEEECCCCC
Confidence 3467889999997764
No 329
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.21 E-value=0.0012 Score=68.63 Aligned_cols=38 Identities=29% Similarity=0.352 Sum_probs=30.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCc
Q 011076 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (494)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r 141 (494)
..+.+|+++|+|||||||++..|+..+ ...+|+.|.++
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~ 293 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDTLG 293 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG-----TCEECCGGGSC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc-----CcEEEccchHH
Confidence 346889999999999999999998432 45677887764
No 330
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.19 E-value=0.00031 Score=65.18 Aligned_cols=42 Identities=31% Similarity=0.338 Sum_probs=35.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~ 142 (494)
+.+|+|+|++||||||++..|+..+...|.-+..++.|..+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRH 66 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhh
Confidence 568999999999999999999999987687666778776554
No 331
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.19 E-value=0.00037 Score=70.32 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=36.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHh--cCCceEEEEcccCc
Q 011076 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQK--KGWKPALVCADTFR 141 (494)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLA~~l~~--~g~kVaiVs~D~~r 141 (494)
+.|.+|+|+|++||||||++..|+..+.. .+.+|.+++.|.|-
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 45789999999999999999999988874 35689999999864
No 332
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.18 E-value=0.0015 Score=59.84 Aligned_cols=34 Identities=26% Similarity=0.489 Sum_probs=27.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
++|+|++|+||||++..++..+...++.+..+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 74 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEM 74 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccccccceEEe
Confidence 8999999999999999999888766555444433
No 333
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.18 E-value=0.00043 Score=64.34 Aligned_cols=42 Identities=26% Similarity=0.439 Sum_probs=34.0
Q ss_pred CCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCC--ceEEEEcccC
Q 011076 93 SFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGW--KPALVCADTF 140 (494)
Q Consensus 93 ~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~--kVaiVs~D~~ 140 (494)
++.....++.+|+++|++||||||++..|+ +. .+.+++.|.+
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~------~~~~~~~~i~~D~~ 56 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQ------KHLPNCSVISQDDF 56 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHH------TTSTTEEEEEGGGG
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHH------HhcCCcEEEeCCcc
Confidence 344444556789999999999999999999 54 7899999875
No 334
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.15 E-value=0.00087 Score=65.46 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=30.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhc-CCceEEEEcc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCAD 138 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~-g~kVaiVs~D 138 (494)
..+++++|++||||||+++.|+.++... ..++.+...+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~ 63 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 63 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence 4579999999999999999999988764 4566665544
No 335
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.14 E-value=0.00029 Score=65.94 Aligned_cols=42 Identities=21% Similarity=0.204 Sum_probs=36.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH-hcCCceEEEEcccCcc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ-KKGWKPALVCADTFRA 142 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~-~~g~kVaiVs~D~~r~ 142 (494)
+.+|+|+|++||||||++..|+.+|. ..|.++..++.|.+|.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~ 67 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF 67 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhh
Confidence 56899999999999999999999998 6798888888776553
No 336
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.13 E-value=0.0015 Score=64.65 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
.|..++|.|+||+|||+++..+|..+ |..+..+++
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~ 69 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSA 69 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeH
Confidence 35678899999999999999999877 667777765
No 337
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.12 E-value=0.00088 Score=66.94 Aligned_cols=37 Identities=24% Similarity=0.198 Sum_probs=33.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH-hcCCceEEEEcc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQ-KKGWKPALVCAD 138 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~-~~g~kVaiVs~D 138 (494)
..++|.|+||+|||+++..++..+. .+|++|..+++.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 4689999999999999999999999 889999988873
No 338
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.11 E-value=0.0025 Score=64.40 Aligned_cols=57 Identities=19% Similarity=0.126 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhc--------CCceEEEEcc
Q 011076 73 RIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKK--------GWKPALVCAD 138 (494)
Q Consensus 73 ~~i~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~--------g~kVaiVs~D 138 (494)
+...+.+.+.+...+.. +.+..++|+|++|+||||++..++..+... +..+..+++.
T Consensus 26 ~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 26 EDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp HHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred HHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 44455565666555442 234579999999999999999999988765 6677777663
No 339
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.11 E-value=0.00024 Score=70.60 Aligned_cols=41 Identities=22% Similarity=0.423 Sum_probs=33.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r 141 (494)
+.+|++.|++||||||++..|+..|...|.++.+++.|.|-
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 56899999999999999999999888778899999999754
No 340
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.11 E-value=0.0046 Score=62.34 Aligned_cols=113 Identities=17% Similarity=0.082 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHhc-CCceEEEEcccCcchhHHHHHhh
Q 011076 73 RIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQN 151 (494)
Q Consensus 73 ~~i~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~-g~kVaiVs~D~~r~~a~~qLk~~ 151 (494)
+...+.+...+...+... .+.+..++|+|++|+||||++..++..+... +..+.-+++...... .+-+...
T Consensus 23 ~~~~~~l~~~l~~~~~~~-------~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~l 94 (389)
T 1fnn_A 23 EQQLQQLDILLGNWLRNP-------GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF-TAIIGEI 94 (389)
T ss_dssp HHHHHHHHHHHHHHHHST-------TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC-------CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH-HHHHHHH
Confidence 344455555555544321 1112269999999999999999999888776 577777776443321 1111222
Q ss_pred hhccCcceeccCCCCChHHHHHHHHHHHh-ccCCcEEEEeCCCCC
Q 011076 152 ATKAKIPFYGSYTESDPVRIAVEGVETFK-KENCDLIIVDTSGRH 195 (494)
Q Consensus 152 ~~~~~i~~~~~~~~~dp~~i~~~~l~~~~-~~~~dvIIIDTaG~~ 195 (494)
....+.+.. ........+.......+. ..+..++++|-+...
T Consensus 95 ~~~l~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 95 ARSLNIPFP--RRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL 137 (389)
T ss_dssp HHHTTCCCC--SSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS
T ss_pred HHHhCccCC--CCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc
Confidence 222222211 111122222222222222 234678999988776
No 341
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.10 E-value=0.00038 Score=67.11 Aligned_cols=42 Identities=26% Similarity=0.469 Sum_probs=34.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHh-----cCCceEEEEcccC
Q 011076 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQK-----KGWKPALVCADTF 140 (494)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLA~~l~~-----~g~kVaiVs~D~~ 140 (494)
.++.+|+|+|++||||||++..|+..|.- .++++.+++.|.|
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~ 66 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF 66 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcc
Confidence 35678999999999999999999987653 2567889999865
No 342
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.10 E-value=0.00043 Score=62.81 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=34.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r 141 (494)
+.+|+|+|++||||||++..|+.+|...|+.+..++.|..|
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 45 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHH
Confidence 46799999999999999999999987778888777776544
No 343
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.10 E-value=0.017 Score=56.59 Aligned_cols=30 Identities=33% Similarity=0.463 Sum_probs=26.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCC
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGW 130 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~ 130 (494)
+..++|+|+||+||||++..+|..+...+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~ 96 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGY 96 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 346999999999999999999999987554
No 344
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.07 E-value=0.002 Score=64.72 Aligned_cols=38 Identities=29% Similarity=0.404 Sum_probs=31.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhc---CCceEEEEcc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK---GWKPALVCAD 138 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~---g~kVaiVs~D 138 (494)
+..++|+|++|+||||++..++..+... +..+..+++.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 4569999999999999999999988765 6677777763
No 345
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.06 E-value=0.011 Score=55.34 Aligned_cols=88 Identities=17% Similarity=0.111 Sum_probs=54.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC--cchhHHHHHhhhhccCcceeccCC-----CCC---hHHH
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF--RAGAFDQLKQNATKAKIPFYGSYT-----ESD---PVRI 171 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~--r~~a~~qLk~~~~~~~i~~~~~~~-----~~d---p~~i 171 (494)
..|.+.+.+|.||||.+..+|.....+|++|+++..... ..+-.+-+..+ ++.+..... ..+ ....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCGGGHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCCCCcHHHHHH
Confidence 347777778899999999999999999999999987653 22222223322 233222111 111 1223
Q ss_pred HHHHHHHH----hccCCcEEEEeCCC
Q 011076 172 AVEGVETF----KKENCDLIIVDTSG 193 (494)
Q Consensus 172 ~~~~l~~~----~~~~~dvIIIDTaG 193 (494)
+..++..+ ....||+||+|-.+
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~ 130 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELT 130 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHH
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 34444443 34679999999874
No 346
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.05 E-value=0.016 Score=58.27 Aligned_cols=43 Identities=12% Similarity=0.024 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHh
Q 011076 76 QQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQK 127 (494)
Q Consensus 76 ~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~ 127 (494)
...++..|...+.. +.+..+.|.|+||+|||+++..++..|..
T Consensus 29 ~~~i~~~L~~~i~~---------~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 29 FTRIFLPIYDSLMS---------SQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp HHHHHHHHHHHHHT---------TCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34556666665542 23557999999999999999999999975
No 347
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.03 E-value=0.00071 Score=62.69 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=31.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEE
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALV 135 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiV 135 (494)
++.+|+|+|++||||||++..|+.+|...+..+..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 356899999999999999999999998888888544
No 348
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=97.03 E-value=0.0011 Score=67.15 Aligned_cols=69 Identities=17% Similarity=0.254 Sum_probs=39.6
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCCc-ccHHHHH----HHH---hccCCeeEEEEeCccCCC
Q 011076 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-QAAFDQA----QAF---KQSVSVGAVIVTKMDGHA 254 (494)
Q Consensus 183 ~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~g-~~~~~~~----~~f---~~~~~i~~vVltK~D~~~ 254 (494)
.+.+-|.||||........ +..-.....++.+++|+|.+.. ....... ... ...+++ .+|.||+|+..
T Consensus 45 ~v~LqIWDTAGQErf~~~~---l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipi-llvgNK~DL~~ 120 (331)
T 3r7w_B 45 LIDLAVMELPGQLNYFEPS---YDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINI-EVLIHKVDGLS 120 (331)
T ss_dssp SSCEEEEECCSCSSSCCCS---HHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEE-EEECCCCCSSC
T ss_pred EEEEEEEECCCchhccchh---hhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcE-EEEEECcccCc
Confidence 4678999999986432100 0001123478999999999854 1222211 111 122344 78899999865
Q ss_pred C
Q 011076 255 K 255 (494)
Q Consensus 255 ~ 255 (494)
.
T Consensus 121 ~ 121 (331)
T 3r7w_B 121 E 121 (331)
T ss_dssp S
T ss_pred h
Confidence 3
No 349
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.03 E-value=0.0048 Score=61.94 Aligned_cols=39 Identities=31% Similarity=0.368 Sum_probs=30.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhc------CCceEEEEccc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK------GWKPALVCADT 139 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~------g~kVaiVs~D~ 139 (494)
+..++|+|++|+||||++..++..+... +..+.-+++..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 4569999999999999999999988664 55555566543
No 350
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.03 E-value=0.00067 Score=63.06 Aligned_cols=38 Identities=37% Similarity=0.381 Sum_probs=31.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~ 140 (494)
++.+|+++|++||||||++..|+..+.. ++.+++.|.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~ 42 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHY 42 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCcc
Confidence 3568999999999999999999965542 5889998864
No 351
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.02 E-value=0.00034 Score=63.76 Aligned_cols=37 Identities=30% Similarity=0.457 Sum_probs=29.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCc
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r 141 (494)
.+.+|+|+|++||||||++..|+.+| |+ .+++.|.+|
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l---~~--~~i~~D~~~ 40 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL---RL--PLLSKDAFK 40 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH---TC--CEEEHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc---CC--eEecHHHHH
Confidence 35789999999999999999999776 33 357777665
No 352
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.02 E-value=0.00078 Score=69.21 Aligned_cols=83 Identities=20% Similarity=0.240 Sum_probs=49.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhc-CCceEEEEcccCcchhHHHHHhhhhccCcceecc-CCCCChHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS-YTESDPVRIAVEGVE 177 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~-g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~-~~~~dp~~i~~~~l~ 177 (494)
+..+++++|++|||||||++.|+.++... ..+|.++..+. .. ..+..+.+... ....++.. ...++.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~-e~---------~~~~~~~~v~Q~~~g~~~~~-~~~~l~ 203 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI-EY---------VFKHKKSIVNQREVGEDTKS-FADALR 203 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSC-CS---------CCCCSSSEEEEEEBTTTBSC-SHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccH-hh---------hhccCceEEEeeecCCCHHH-HHHHHH
Confidence 35689999999999999999999988765 45666655322 10 00111111110 00111111 134555
Q ss_pred HHhccCCcEEEEeCCC
Q 011076 178 TFKKENCDLIIVDTSG 193 (494)
Q Consensus 178 ~~~~~~~dvIIIDTaG 193 (494)
.+...+.|++++|-|-
T Consensus 204 ~~L~~~pd~illdE~~ 219 (372)
T 2ewv_A 204 AALREDPDVIFVGEMR 219 (372)
T ss_dssp HHTTSCCSEEEESCCC
T ss_pred HHhhhCcCEEEECCCC
Confidence 5555689999999996
No 353
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.01 E-value=0.0027 Score=60.23 Aligned_cols=112 Identities=12% Similarity=0.089 Sum_probs=60.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc-CcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT-FRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~-~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~ 178 (494)
+..+.+++|+.|+||||.+..++..+..+|++|.++.+-. .|.+. .....+.++.+..... .++. +.++.
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge----~~i~s~~g~~~~a~~~-~~~~----~~~~~ 97 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSE----EDVVSHNGLKVKAVPV-SASK----DIFKH 97 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC---------------------CCEEEC-SSGG----GGGGG
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchH----HHHHhhcCCeeEEeec-CCHH----HHHHH
Confidence 3467889999999999999999999999999999997521 12111 1122333332221111 1111 11112
Q ss_pred HhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCC
Q 011076 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS 224 (494)
Q Consensus 179 ~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~ 224 (494)
+. ..+|+|+||-+-+...+ ..+.+..+... .-..++.=+|..
T Consensus 98 ~~-~~~dvViIDEaQF~~~~--~V~~l~~l~~~-~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 98 IT-EEMDVIAIDEVQFFDGD--IVEVVQVLANR-GYRVIVAGLDQD 139 (214)
T ss_dssp CC-SSCCEEEECCGGGSCTT--HHHHHHHHHHT-TCEEEEEECSBC
T ss_pred Hh-cCCCEEEEECcccCCHH--HHHHHHHHhhC-CCEEEEEecccc
Confidence 21 35999999999886533 33444443332 333444445443
No 354
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.01 E-value=0.0013 Score=64.56 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=30.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~ 142 (494)
|.+|+|+|+|||||||++..|+..+ ....+++.|.+|.
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~----~~~~~i~~D~~r~ 39 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN----PGFYNINRDDYRQ 39 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC----CCcEEecccHHHH
Confidence 4579999999999999999998532 2466788887664
No 355
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.98 E-value=0.0002 Score=66.53 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=32.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~ 139 (494)
+|+|+|++||||||++..|+.+|...|.+|.++..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~ 38 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPR 38 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 6899999999999999999999988888888776533
No 356
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.98 E-value=0.0056 Score=58.09 Aligned_cols=124 Identities=19% Similarity=0.250 Sum_probs=67.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH-HhcCC--ceEEEEcccCcchhHHHHHhhhhccCcce----e-c-----cC--CCC
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYH-QKKGW--KPALVCADTFRAGAFDQLKQNATKAKIPF----Y-G-----SY--TES 166 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l-~~~g~--kVaiVs~D~~r~~a~~qLk~~~~~~~i~~----~-~-----~~--~~~ 166 (494)
..++++|++||||||++..+.... ...+. .+.++...+.|..+....+..+...+..+ - . .. ...
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 368999999999999877665443 23333 55666666777666544443333222110 0 0 00 000
Q ss_pred -----ChHHHHHHHHHHHhccCCcEEEEeCCCCCchhHHHH-HHHHHHHHhcCCCEEEEEecCCCccc
Q 011076 167 -----DPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALF-EEMRQVSEATNPDLVIFVMDSSIGQA 228 (494)
Q Consensus 167 -----dp~~i~~~~l~~~~~~~~dvIIIDTaG~~~~~~~l~-~el~~i~~~~~~d~vllVvDa~~g~~ 228 (494)
.| ....+.+.. ...+++++|+|.+-....+.+.. ..+..+... .++.-++++.|+...+
T Consensus 157 ~Ivv~Tp-g~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~-~~~~~~il~SAT~~~~ 221 (235)
T 3llm_A 157 SIMFCTV-GVLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQA-YPEVRIVLMSATIDTS 221 (235)
T ss_dssp EEEEEEH-HHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHH-CTTSEEEEEECSSCCH
T ss_pred eEEEECH-HHHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhh-CCCCeEEEEecCCCHH
Confidence 11 112222222 24678999999997653444433 344444443 3566678888886543
No 357
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.96 E-value=0.00078 Score=61.50 Aligned_cols=34 Identities=41% Similarity=0.553 Sum_probs=29.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEE
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs 136 (494)
+|+|.|++||||||++..|+.+|...|..|..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 5899999999999999999999988898886443
No 358
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.92 E-value=0.00085 Score=70.64 Aligned_cols=28 Identities=14% Similarity=0.078 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHH
Q 011076 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQ 126 (494)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLA~~l~ 126 (494)
.+..+|+++|++++||||++|.|..++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~~~ 92 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMY 92 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhhcc
Confidence 4567899999999999999999997653
No 359
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.92 E-value=0.00082 Score=61.99 Aligned_cols=36 Identities=22% Similarity=0.178 Sum_probs=33.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
..++|+|++|+||||++..++..+..++.++..+++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 569999999999999999999999988999988877
No 360
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.92 E-value=0.0064 Score=66.56 Aligned_cols=45 Identities=24% Similarity=0.303 Sum_probs=34.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh-cCCceEEEEcccCcchhHHHHHh
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADTFRAGAFDQLKQ 150 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~-~g~kVaiVs~D~~r~~a~~qLk~ 150 (494)
+.++.|+||+||||++..++.++.+ .+.+|++++. ...|.+++..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~---tn~A~~~l~~ 242 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP---SNIAVDQLTE 242 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEES---SHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeC---cHHHHHHHHH
Confidence 5788999999999999999999887 5777777765 3455555544
No 361
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.92 E-value=0.005 Score=62.57 Aligned_cols=38 Identities=21% Similarity=0.163 Sum_probs=30.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhc------CCceEEEEcc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK------GWKPALVCAD 138 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~------g~kVaiVs~D 138 (494)
..++.|+|++|+||||++..++..+... |.+|..++..
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e 174 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 174 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCC
Confidence 4689999999999999999999877432 3476777663
No 362
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.91 E-value=0.0045 Score=58.13 Aligned_cols=35 Identities=29% Similarity=0.336 Sum_probs=29.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
+.|+|=|.-||||||.+..|+.+|. +|++|.++.-
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~~e 37 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTRE 37 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEEES
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEeeC
Confidence 5789999999999999999999996 4888766543
No 363
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.91 E-value=0.00099 Score=61.65 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=31.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEE
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs 136 (494)
+.+|+|+|++||||||++..|+.+|...+..+.++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 568999999999999999999999988788874443
No 364
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.89 E-value=0.00058 Score=62.54 Aligned_cols=39 Identities=28% Similarity=0.368 Sum_probs=33.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~ 140 (494)
.+++|+|++||||||++..|+..+...|+++..|..|..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAH 41 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence 479999999999999999999999988988888887653
No 365
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.87 E-value=0.00097 Score=61.47 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceE
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPA 133 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVa 133 (494)
+.+|+|+|++||||||++..|+.+|...| ++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~ 35 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKR-DVY 35 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEE
Confidence 46799999999999999999999887766 553
No 366
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.87 E-value=0.00048 Score=62.06 Aligned_cols=38 Identities=13% Similarity=0.031 Sum_probs=28.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r 141 (494)
+.+|+++|++||||||++..|+..| +.....++.|.++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D~~~ 40 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVDSLI 40 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccchHh
Confidence 3579999999999999999999654 3344455677543
No 367
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.85 E-value=0.0073 Score=58.54 Aligned_cols=34 Identities=26% Similarity=0.243 Sum_probs=26.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
+..++|+|+||+||||++..+|..+ +..+..+++
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~ 84 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATET---NATFIRVVG 84 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeh
Confidence 4459999999999999999998654 445555544
No 368
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.84 E-value=0.0033 Score=66.09 Aligned_cols=35 Identities=20% Similarity=0.101 Sum_probs=30.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCC-ceEEEEc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGW-KPALVCA 137 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~-kVaiVs~ 137 (494)
.++|.|++|+||||++..++.+|...|. +|.+++.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~ 82 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAP 82 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecC
Confidence 6899999999999999999999998887 5666654
No 369
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.84 E-value=0.0056 Score=65.54 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=32.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D 138 (494)
..+++++|++|+||||++..++..+...|.++..++.+
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 35799999999999999999998888778887666653
No 370
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.83 E-value=0.0012 Score=59.95 Aligned_cols=32 Identities=44% Similarity=0.686 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEE
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPAL 134 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVai 134 (494)
+|+|+|++||||||++..|+.+|...|..+.-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~ 33 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSL 33 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 58999999999999999999999877876543
No 371
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.82 E-value=0.0007 Score=60.29 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=28.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~ 142 (494)
+|+|+|++||||||++..|+..+ | ..+++.|.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l---~--~~~i~~d~~~~ 37 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL---K--YPIIKGSSFEL 37 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH---C--CCEEECCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CeeecCccccc
Confidence 68999999999999999999654 2 45688887543
No 372
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.81 E-value=0.00087 Score=59.92 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHh
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQK 127 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~ 127 (494)
..++|+|++|+||||++..++..+..
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 45799999999999999999998866
No 373
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.81 E-value=0.0013 Score=65.66 Aligned_cols=43 Identities=23% Similarity=0.287 Sum_probs=35.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHH--hcCCceEEEEcccCc
Q 011076 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQ--KKGWKPALVCADTFR 141 (494)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLA~~l~--~~g~kVaiVs~D~~r 141 (494)
.++.+|+|+|++||||||++..|+..+. -.+-+|.+++.|-+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 3457899999999999999999998776 345578899988653
No 374
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=96.78 E-value=0.013 Score=66.36 Aligned_cols=36 Identities=17% Similarity=0.010 Sum_probs=32.2
Q ss_pred CeEEEEEcC-CCCcHHHHHHHHHHHHHhc-----CCceEEEE
Q 011076 101 PSVIMFVGL-QGSGKTTTCTKYAYYHQKK-----GWKPALVC 136 (494)
Q Consensus 101 ~~vI~lvG~-~GvGKTTl~~kLA~~l~~~-----g~kVaiVs 136 (494)
.+.++|.|. +||||||++..|+..|+++ |++|+-.-
T Consensus 34 ~~~l~I~gt~s~vGKT~vt~gL~r~l~~~~~~~~G~~V~~fK 75 (831)
T 4a0g_A 34 HPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLK 75 (831)
T ss_dssp SCEEEEEESSSSSCHHHHHHHHHHHHHSCSSCCTTCEEEEEE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHHHhcccccCCceEEEEc
Confidence 356899999 5999999999999999999 99998776
No 375
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.77 E-value=0.0012 Score=69.36 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=32.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhc--CCceEEEEccc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKK--GWKPALVCADT 139 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~--g~kVaiVs~D~ 139 (494)
+.++|+|++|+||||++..++.++... +.++..+++..
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 359999999999999999999998776 77888887743
No 376
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.77 E-value=0.0065 Score=63.74 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=64.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHH
Q 011076 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (494)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~ 178 (494)
...++.++.|+||+||||++.+++. ..+++++++ +..+.+.++.-....+.+. . ....+.-....+..
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~-----~~~~lVlTp---T~~aa~~l~~kl~~~~~~~---~-~~~~V~T~dsfL~~ 226 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN-----FEEDLILVP---GRQAAEMIRRRANASGIIV---A-TKDNVRTVDSFLMN 226 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC-----TTTCEEEES---CHHHHHHHHHHHTTTSCCC---C-CTTTEEEHHHHHHT
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc-----cCCeEEEeC---CHHHHHHHHHHhhhcCccc---c-ccceEEEeHHhhcC
Confidence 3467889999999999999998873 256777776 4444455544332211100 0 00001111222222
Q ss_pred Hhcc---CCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCCC
Q 011076 179 FKKE---NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSI 225 (494)
Q Consensus 179 ~~~~---~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~~ 225 (494)
.... .+|++|||-++..+.. + +..+.....+..++++-|...
T Consensus 227 ~~~~~~~~~d~liiDE~sm~~~~--~---l~~l~~~~~~~~vilvGD~~Q 271 (446)
T 3vkw_A 227 YGKGARCQFKRLFIDEGLMLHTG--C---VNFLVEMSLCDIAYVYGDTQQ 271 (446)
T ss_dssp TTSSCCCCCSEEEEETGGGSCHH--H---HHHHHHHTTCSEEEEEECTTS
T ss_pred CCCCCCCcCCEEEEeCcccCCHH--H---HHHHHHhCCCCEEEEecCccc
Confidence 2111 2899999999987543 2 223344566789999999863
No 377
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.76 E-value=0.0013 Score=60.42 Aligned_cols=35 Identities=29% Similarity=0.325 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
+.+|+|+|++||||||++..|+.+| .|+++..++.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~~ 38 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLNF 38 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEES
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEec
Confidence 4579999999999999999999776 3566655543
No 378
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.74 E-value=0.0016 Score=65.33 Aligned_cols=42 Identities=26% Similarity=0.237 Sum_probs=35.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHhc-C-CceEEEEcccC
Q 011076 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKK-G-WKPALVCADTF 140 (494)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~-g-~kVaiVs~D~~ 140 (494)
.++.+|+|+|++||||||++..|+..+... | .++.+|..|.|
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 346789999999999999999999888753 4 57999998875
No 379
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.74 E-value=0.0038 Score=76.11 Aligned_cols=90 Identities=21% Similarity=0.192 Sum_probs=57.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC-cchhHHHHHhhhhccCcceec-cCCCCChHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF-RAGAFDQLKQNATKAKIPFYG-SYTESDPVRIAVEGVE 177 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~-r~~a~~qLk~~~~~~~i~~~~-~~~~~dp~~i~~~~l~ 177 (494)
++..|.|+||||+||||++..++....++|++++.++++-. .+- . +...++++-. .....+|.+-+.+.+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l-----~--a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI-----Y--ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHH-----H--HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHH-----H--HHHcCCCchhceeecCChHHHHHHHHH
Confidence 35689999999999999999999999999999999998532 221 1 2233322111 0112233333333333
Q ss_pred -HHhccCCcEEEEeCC-CCCc
Q 011076 178 -TFKKENCDLIIVDTS-GRHK 196 (494)
Q Consensus 178 -~~~~~~~dvIIIDTa-G~~~ 196 (494)
..+...+++|+||.- ++.+
T Consensus 1499 ~lvr~~~~~lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVAALTP 1519 (2050)
T ss_dssp HHHHHTCCSEEEESCGGGCCC
T ss_pred HHHhcCCCCEEEEcChhHhcc
Confidence 234468999999996 4554
No 380
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.72 E-value=0.011 Score=53.41 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=19.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYA 122 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA 122 (494)
..+++++|++||||||++..+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999854
No 381
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.72 E-value=0.0039 Score=68.11 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHh----cCCceEEEEc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQK----KGWKPALVCA 137 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~----~g~kVaiVs~ 137 (494)
+.+++.|+||+||||+++.+...|.+ .+.+|.++++
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~AP 204 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAP 204 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeC
Confidence 57899999999999999999998874 3556665544
No 382
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.71 E-value=0.0047 Score=58.70 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=65.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc--ccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA--DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~--D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~ 177 (494)
...+.+++|+-|+||||.+..++..+...|++|.++.+ |. |.+ ......+.++....... .++.++. .
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~-R~~----~~~I~Sr~G~~~~a~~v-~~~~di~----~ 96 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDD-RYH----KEKVVSHNGNAIEAINI-SKASEIM----T 96 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC----------------CBTTBCCEEEEE-SSGGGGG----G
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCC-cch----hhhHHHhcCCceeeEEe-CCHHHHH----H
Confidence 35788999999999999888888888888999999965 32 211 12234455543322111 1111221 1
Q ss_pred HHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCC
Q 011076 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS 224 (494)
Q Consensus 178 ~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~ 224 (494)
. ....+|+|+||-+=+... ++.+.+..+.. ..-..+++=+|..
T Consensus 97 ~-i~~~~dvV~IDEaQFf~~--~~v~~l~~la~-~gi~Vi~~GLd~D 139 (219)
T 3e2i_A 97 H-DLTNVDVIGIDEVQFFDD--EIVSIVEKLSA-DGHRVIVAGLDMD 139 (219)
T ss_dssp S-CCTTCSEEEECCGGGSCT--HHHHHHHHHHH-TTCEEEEEEESBC
T ss_pred H-HhcCCCEEEEechhcCCH--HHHHHHHHHHH-CCCEEEEeecccc
Confidence 1 124789999999988753 35555555553 3445566666654
No 383
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.015 Score=60.30 Aligned_cols=68 Identities=19% Similarity=0.185 Sum_probs=43.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
|+-|+|.||||+|||+++.++|..+ |.....|+.... .. ....+.....++....++
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s~l-------------------~s-k~vGese~~vr~lF~~Ar 238 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGAEL-------------------VQ-KYIGEGSRMVRELFVMAR 238 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGGGG-------------------SC-SSTTHHHHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhHHh-------------------hc-cccchHHHHHHHHHHHHH
Confidence 4559999999999999999999653 444554544110 01 011122344555666666
Q ss_pred ccCCcEEEEeC
Q 011076 181 KENCDLIIVDT 191 (494)
Q Consensus 181 ~~~~dvIIIDT 191 (494)
.....+|+||-
T Consensus 239 ~~aP~IIFiDE 249 (405)
T 4b4t_J 239 EHAPSIIFMDE 249 (405)
T ss_dssp HTCSEEEEEES
T ss_pred HhCCceEeeec
Confidence 66778889885
No 384
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.70 E-value=0.0013 Score=66.81 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=29.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~ 140 (494)
.+|+|+|++||||||++..||..+ .+.+|+.|.+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l-----~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF-----NGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT-----TEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc-----CCceeccccc
Confidence 589999999999999999999654 3789999975
No 385
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.69 E-value=0.007 Score=60.59 Aligned_cols=72 Identities=11% Similarity=0.148 Sum_probs=43.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
++-|+|+|+||+||||++..+|..+ .+..+..+++.... ..+. ..........+..+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~--~~~~~~~i~~~~l~-------------------~~~~-g~~~~~~~~lf~~a~ 102 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSSDLV-------------------SKWL-GESEKLVKNLFQLAR 102 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT--TSCEEEEEECCSSC-------------------CSSC-CSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHHc--CCCcEEEEEhHHHH-------------------hhhh-hHHHHHHHHHHHHHH
Confidence 4679999999999999999999765 23444445542110 0000 112233344444555
Q ss_pred ccCCcEEEEeCCCC
Q 011076 181 KENCDLIIVDTSGR 194 (494)
Q Consensus 181 ~~~~dvIIIDTaG~ 194 (494)
.....+|+||-...
T Consensus 103 ~~~~~vl~iDEid~ 116 (322)
T 1xwi_A 103 ENKPSIIFIDEIDS 116 (322)
T ss_dssp HTSSEEEEEETTTG
T ss_pred hcCCcEEEeecHHH
Confidence 55678999996553
No 386
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.0046 Score=64.70 Aligned_cols=68 Identities=19% Similarity=0.246 Sum_probs=42.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
|+-|+|.||||+|||+++.++|..+ |.....|++... ...+ ........+..+..++
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~l-------------------~~~~-~Ge~e~~ir~lF~~A~ 262 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSEF-------------------VHKY-LGEGPRMVRDVFRLAR 262 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGGT-------------------CCSS-CSHHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecchh-------------------hccc-cchhHHHHHHHHHHHH
Confidence 5569999999999999999999655 445555554110 0001 1112233445555566
Q ss_pred ccCCcEEEEeC
Q 011076 181 KENCDLIIVDT 191 (494)
Q Consensus 181 ~~~~dvIIIDT 191 (494)
....-++++|-
T Consensus 263 ~~aP~IifiDE 273 (428)
T 4b4t_K 263 ENAPSIIFIDE 273 (428)
T ss_dssp HTCSEEEEEEC
T ss_pred HcCCCeeechh
Confidence 56677888885
No 387
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.65 E-value=0.016 Score=57.95 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ 126 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~ 126 (494)
+. ++|+|++|+||||++..++..+.
T Consensus 37 ~~-~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 37 PH-LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp CC-EEEECSTTSSHHHHHHTHHHHHS
T ss_pred Ce-EEEECCCCCCHHHHHHHHHHHHc
Confidence 44 89999999999999999998654
No 388
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.65 E-value=0.0012 Score=62.73 Aligned_cols=39 Identities=36% Similarity=0.496 Sum_probs=29.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc-ccCcc
Q 011076 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA-DTFRA 142 (494)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~-D~~r~ 142 (494)
.++++|+|+|+|||||||.+..|+..| .+.-|++ |.+|.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~-----g~~hIstGdllR~ 66 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF-----HFNHLSSGDLLRA 66 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH-----CCEEECHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH-----CCceEcHHHHHHH
Confidence 457899999999999999999999655 2333443 55553
No 389
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.65 E-value=0.0062 Score=73.40 Aligned_cols=89 Identities=20% Similarity=0.190 Sum_probs=57.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceecc--CCCCChHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS--YTESDPVRIAVEGVET 178 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~--~~~~dp~~i~~~~l~~ 178 (494)
..+|+|.|+||+||||++..+|..+++.|.+|+.++.+.-.. |+. +.+.+++.... .... +..-..+.+..
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~----ql~--A~~lGvd~~~L~i~~~~-~leei~~~l~~ 804 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD----PIY--ARKLGVDIDNLLCSQPD-TGEQALEICDA 804 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCC----HHH--HHHTTCCGGGCEEECCS-SHHHHHHHHHH
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHH----HHH--HHHcCCChhheEEecCC-cHHHHHHHHHH
Confidence 458999999999999999999999999899999999864321 221 34444332110 1112 22222222322
Q ss_pred -HhccCCcEEEEeCCCCCc
Q 011076 179 -FKKENCDLIIVDTSGRHK 196 (494)
Q Consensus 179 -~~~~~~dvIIIDTaG~~~ 196 (494)
....++++|+||.-....
T Consensus 805 lv~~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 805 LARSGAVDVIVVDSVAALT 823 (1706)
T ss_dssp HHHHTCCSEEEESCSTTCC
T ss_pred HHHccCCCEEEEechhhhc
Confidence 234679999999977654
No 390
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.61 E-value=0.0033 Score=63.21 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=29.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~ 139 (494)
+.+|+|+||+||||||++..||.. ....+|++|.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~-----~~~~iis~Ds 36 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR-----LNGEVISGDS 36 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT-----TTEEEEECCG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh-----CccceeecCc
Confidence 457999999999999999999953 3567999995
No 391
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.61 E-value=0.013 Score=53.92 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=23.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK 128 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~ 128 (494)
+..++|+|++|+||||++..++..+...
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3478999999999999999999877643
No 392
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.59 E-value=0.002 Score=63.33 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=34.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~ 142 (494)
...++|+|+||+||||++..++..+...+..+..+++..+..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~ 88 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME 88 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCS
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccc
Confidence 357999999999999999999999887677777788765443
No 393
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.59 E-value=0.0014 Score=59.50 Aligned_cols=34 Identities=29% Similarity=0.492 Sum_probs=27.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~ 139 (494)
+.+|+|+|++||||||++..|+..+ | ..+++.|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~---~--~~~i~~d~ 36 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY---G--YTHLSAGE 36 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH---C--CEEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh---C--CeEEeHHH
Confidence 5689999999999999999999655 3 34577653
No 394
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.58 E-value=0.004 Score=63.14 Aligned_cols=35 Identities=17% Similarity=0.409 Sum_probs=29.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~ 140 (494)
+.+|+|+||+||||||++..||. ....-+|++|..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~-----~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA-----HFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT-----TSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHH-----HCCCcEEccccc
Confidence 46899999999999999999994 335679999964
No 395
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.58 E-value=0.0011 Score=60.59 Aligned_cols=36 Identities=22% Similarity=0.119 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~ 139 (494)
++.+|+++|++||||||++..|+..+ ....++++|.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l----~g~~~id~d~ 44 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAEL----DGFQHLEVGK 44 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHS----TTEEEEEHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc----CCCEEeeHHH
Confidence 34679999999999999999999542 1356677753
No 396
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.57 E-value=0.0015 Score=59.73 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~ 139 (494)
+.+|+|+|++||||||++..|+.+|. ..+++.|.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~-----~~~i~~d~ 45 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG-----FTHLSTGE 45 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT-----CEEEEHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC-----CeEEcHHH
Confidence 45799999999999999999997652 55677754
No 397
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.57 E-value=0.0048 Score=61.92 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=26.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEE
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs 136 (494)
++|+|++|+||||++..++..+...+.++.++.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~ 81 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLE 81 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEE
Confidence 899999999999999999988865444433433
No 398
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.57 E-value=0.0035 Score=59.86 Aligned_cols=42 Identities=29% Similarity=0.362 Sum_probs=36.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHh-cCCceEEEEcccC
Q 011076 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADTF 140 (494)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLA~~l~~-~g~kVaiVs~D~~ 140 (494)
.++..|+|.|++||||||.+..|+.+|.. .|++|.+++..|.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~ 61 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG 61 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC
Confidence 34678999999999999999999999998 8999988555444
No 399
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.57 E-value=0.012 Score=56.51 Aligned_cols=84 Identities=15% Similarity=0.055 Sum_probs=51.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc--ccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA--DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~--D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~ 177 (494)
...+.+++|+.|+||||.+..++..+..+|++|.++.. |. |.+ . . ...+.++........ +..++ ++
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~-Ryg-~-~---i~sr~G~~~~a~~i~-~~~di----~~ 86 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDT-RYS-S-S---FCTHDRNTMEALPAC-LLRDV----AQ 86 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCC-CC----------------CEEEEES-SGGGG----HH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCc-cch-H-H---HHhhcCCeeEEEecC-CHHHH----HH
Confidence 35678889999999999999999999999999999984 43 332 1 1 222333322211111 11111 22
Q ss_pred HHhccCCcEEEEeCCCCCc
Q 011076 178 TFKKENCDLIIVDTSGRHK 196 (494)
Q Consensus 178 ~~~~~~~dvIIIDTaG~~~ 196 (494)
.+ ..+|+|+||-+-+..
T Consensus 87 ~~--~~~dvViIDEaQF~~ 103 (234)
T 2orv_A 87 EA--LGVAVIGIDEGQFFP 103 (234)
T ss_dssp HH--TTCSEEEESSGGGCT
T ss_pred Hh--ccCCEEEEEchhhhh
Confidence 22 479999999988874
No 400
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.53 E-value=0.0068 Score=63.91 Aligned_cols=43 Identities=28% Similarity=0.392 Sum_probs=35.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~ 142 (494)
.+.+|+++|+|||||||++.+|+.++...+...-.++.|.+|.
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~ 80 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRR 80 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhh
Confidence 4678999999999999999999999887777777777765543
No 401
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.52 E-value=0.021 Score=56.49 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~ 140 (494)
++.+++.|+||+||||++..++..+ +..+.-+++..+
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~~ 84 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSDC 84 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTTC
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEccccc
Confidence 4568888999999999999998665 455555555333
No 402
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.51 E-value=0.0017 Score=59.20 Aligned_cols=34 Identities=32% Similarity=0.471 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~ 139 (494)
+.+|+|+|++||||||++..|+.+| | ...++.|.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l---~--~~~i~~d~ 42 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY---G--YTHLSTGD 42 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH---C--CEEEEHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh---C--CeEEcHHH
Confidence 4579999999999999999999765 3 34666653
No 403
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.0034 Score=65.83 Aligned_cols=68 Identities=16% Similarity=0.188 Sum_probs=42.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
|+-|+|.||||+|||+++.++|..+ |.....|++... .. ..........+.....++
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~l-------------------~~-~~vGese~~ir~lF~~A~ 271 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQL-------------------VQ-MYIGEGAKLVRDAFALAK 271 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGG-------------------CS-SCSSHHHHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhhh-------------------hh-cccchHHHHHHHHHHHHH
Confidence 5669999999999999999999654 445555554111 00 011112334455555566
Q ss_pred ccCCcEEEEeC
Q 011076 181 KENCDLIIVDT 191 (494)
Q Consensus 181 ~~~~dvIIIDT 191 (494)
....-+|+||-
T Consensus 272 ~~aP~IifiDE 282 (434)
T 4b4t_M 272 EKAPTIIFIDE 282 (434)
T ss_dssp HHCSEEEEEEC
T ss_pred hcCCeEEeecc
Confidence 66677888886
No 404
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.50 E-value=0.0026 Score=60.91 Aligned_cols=40 Identities=28% Similarity=0.380 Sum_probs=31.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhc-----CCceEEEEccc
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKK-----GWKPALVCADT 139 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~-----g~kVaiVs~D~ 139 (494)
++.+|+|+|++||||||++..|+..+... ..++.+++.|.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~ 68 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR 68 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc
Confidence 45689999999999999999999776321 24567777764
No 405
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.50 E-value=0.0016 Score=60.27 Aligned_cols=32 Identities=34% Similarity=0.405 Sum_probs=26.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~ 139 (494)
.+|+++|++||||||++..|+ +.-..+++.|.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La------~lg~~~id~d~ 34 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFT------DLGVPLVDADV 34 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHH------TTTCCEEEHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH------HCCCcccchHH
Confidence 479999999999999999998 34455677765
No 406
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.49 E-value=0.0026 Score=56.74 Aligned_cols=37 Identities=22% Similarity=0.206 Sum_probs=28.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHh-------cCCceEEEEc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK-------KGWKPALVCA 137 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~-------~g~kVaiVs~ 137 (494)
+..++|+|++|+||||++..++..+.. .+..+..+++
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 345899999999999999999998876 3455555544
No 407
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.48 E-value=0.014 Score=61.07 Aligned_cols=68 Identities=15% Similarity=0.177 Sum_probs=42.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
|+-|+|.||||+|||+++.++|..+ +.....|+.... .. ....+.....+.....++
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s~l-------------------~s-k~vGesek~ir~lF~~Ar 272 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQT---SATFLRIVGSEL-------------------IQ-KYLGDGPRLCRQIFKVAG 272 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESGGG-------------------CC-SSSSHHHHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHHh---CCCEEEEEHHHh-------------------hh-ccCchHHHHHHHHHHHHH
Confidence 5569999999999999999999654 444555554110 01 111122334455555666
Q ss_pred ccCCcEEEEeC
Q 011076 181 KENCDLIIVDT 191 (494)
Q Consensus 181 ~~~~dvIIIDT 191 (494)
....-+|+||-
T Consensus 273 ~~aP~IIfiDE 283 (437)
T 4b4t_I 273 ENAPSIVFIDE 283 (437)
T ss_dssp HTCSEEEEEEE
T ss_pred hcCCcEEEEeh
Confidence 66677888874
No 408
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.48 E-value=0.0019 Score=59.51 Aligned_cols=36 Identities=31% Similarity=0.372 Sum_probs=28.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcc
Q 011076 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (494)
Q Consensus 98 ~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D 138 (494)
..++.+|+|+|++||||||++..|+..+ | ...++.|
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~---g--~~~i~~d 47 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY---S--FVHLSAG 47 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHS---S--CEEEEHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHc---C--ceEEeHH
Confidence 3456789999999999999999999653 3 4667766
No 409
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.47 E-value=0.009 Score=72.02 Aligned_cols=89 Identities=20% Similarity=0.195 Sum_probs=57.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceec--cCCCCChHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG--SYTESDPVRIAVEGVET 178 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~--~~~~~dp~~i~~~~l~~ 178 (494)
..++.++|+||+||||++..++...++.|.+|+.++.+.-... + .+.+.+++... .....+ .+-+.+.+..
T Consensus 383 G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~----~--~a~~lGvd~~~L~i~~~~~-~e~~l~~l~~ 455 (1706)
T 3cmw_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP----I--YARKLGVDIDNLLCSQPDT-GEQALEICDA 455 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCH----H--HHHHTTCCGGGCEEECCSS-HHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHH----H--HHHHcCCCHHHeEEcCCCC-HHHHHHHHHH
Confidence 4689999999999999999999999999999999999753221 1 13333332111 011122 2222233332
Q ss_pred -HhccCCcEEEEeCCCCCc
Q 011076 179 -FKKENCDLIIVDTSGRHK 196 (494)
Q Consensus 179 -~~~~~~dvIIIDTaG~~~ 196 (494)
.+..++++|+||.-....
T Consensus 456 lv~~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 456 LARSGAVDVIVVDSVAALT 474 (1706)
T ss_dssp HHHHTCCSEEEESCSTTCC
T ss_pred HHHhcCCCEEEECCHHHhh
Confidence 234679999999966543
No 410
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.47 E-value=0.0075 Score=58.92 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=42.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
+..++|+|+||+||||++..++..+ +....-+++.... ..+ ...........+..+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~-------------------~~~-~~~~~~~~~~~~~~~~ 110 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASLT-------------------SKY-VGDGEKLVRALFAVAR 110 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTTS-------------------SSS-CSCHHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHHh-------------------hcc-cchHHHHHHHHHHHHH
Confidence 4569999999999999999999654 3344444441110 000 0112233333444454
Q ss_pred ccCCcEEEEeCCCC
Q 011076 181 KENCDLIIVDTSGR 194 (494)
Q Consensus 181 ~~~~dvIIIDTaG~ 194 (494)
.....++++|-+..
T Consensus 111 ~~~~~vl~iDEid~ 124 (297)
T 3b9p_A 111 HMQPSIIFIDEVDS 124 (297)
T ss_dssp HTCSEEEEEETGGG
T ss_pred HcCCcEEEeccHHH
Confidence 55678999998654
No 411
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.47 E-value=0.023 Score=54.26 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l 125 (494)
+.-++|+|+||+||||++..++..+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 3458999999999999999999765
No 412
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.46 E-value=0.0015 Score=59.91 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQ 126 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~ 126 (494)
.+++|+||+||||||++..|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4689999999999999999997765
No 413
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.45 E-value=0.0033 Score=63.40 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=29.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~ 140 (494)
+.+|+++|++||||||++..||..+ ...+|+.|.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l-----~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL-----PCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc-----CCcEEeccch
Confidence 4579999999999999999999543 4678999863
No 414
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.43 E-value=0.0016 Score=59.65 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=29.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC
Q 011076 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (494)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~ 140 (494)
.++.+|+|+|++||||||++..|+.. ...+++.|.+
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~------g~~~id~d~~ 41 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW------GYPVLDLDAL 41 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT------TCCEEEHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC------CCEEEcccHH
Confidence 34678999999999999999999853 3567888754
No 415
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.43 E-value=0.018 Score=58.37 Aligned_cols=35 Identities=29% Similarity=0.278 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
.+..++|+|+||+||||++..+|..+ +..+..+++
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~ 150 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISA 150 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEeh
Confidence 35679999999999999999998654 555555655
No 416
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.0041 Score=65.26 Aligned_cols=69 Identities=22% Similarity=0.187 Sum_probs=43.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
|+-|+|.||||+|||+++.++|..+ |.....|++... .. ..........+.....++
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~l-------------------~s-k~~Gese~~ir~~F~~A~ 271 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASGI-------------------VD-KYIGESARIIREMFAYAK 271 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGT-------------------CC-SSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhhh-------------------cc-ccchHHHHHHHHHHHHHH
Confidence 5669999999999999999999654 455555554111 00 001112234445555566
Q ss_pred ccCCcEEEEeCC
Q 011076 181 KENCDLIIVDTS 192 (494)
Q Consensus 181 ~~~~dvIIIDTa 192 (494)
.....+|+||-.
T Consensus 272 ~~~P~IifiDEi 283 (437)
T 4b4t_L 272 EHEPCIIFMDEV 283 (437)
T ss_dssp HSCSEEEEEECC
T ss_pred hcCCceeeeecc
Confidence 666778888753
No 417
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.42 E-value=0.0016 Score=59.44 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l 125 (494)
..+++|+|++||||||+++.|+..+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3579999999999999999999654
No 418
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.42 E-value=0.0022 Score=59.18 Aligned_cols=35 Identities=26% Similarity=0.398 Sum_probs=27.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcc
Q 011076 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (494)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D 138 (494)
..+.+|+|+|++||||||++..|+.+| |. .+++.|
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l---~~--~~i~~d 52 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL---GI--PQISTG 52 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH---TC--CEEEHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh---CC--cEEehh
Confidence 345689999999999999999999766 33 356664
No 419
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.42 E-value=0.0019 Score=58.80 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYA 122 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA 122 (494)
+.+|+++|++||||||++..|+
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 420
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.41 E-value=0.011 Score=72.34 Aligned_cols=88 Identities=20% Similarity=0.218 Sum_probs=55.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceec--cCCCCChHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG--SYTESDPVRIAVEGVET 178 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~--~~~~~dp~~i~~~~l~~ 178 (494)
..++.+.|+||+||||++..+|...++.|.+|+.++..--.. ++ .+.+.+++... .....+ .+-+.+.+..
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~----~~--~a~~lGvd~~~L~I~~~~~-~e~il~~~~~ 455 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD----PI--YARKLGVDIDNLLCSQPDT-GEQALEICDA 455 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCC----HH--HHHHTTCCTTTCEEECCSS-HHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHH----HH--HHHHcCCCHHHeEEeCCCC-HHHHHHHHHH
Confidence 468999999999999999999999998899999999964222 11 13333332110 011222 2222233332
Q ss_pred H-hccCCcEEEEeCCCCC
Q 011076 179 F-KKENCDLIIVDTSGRH 195 (494)
Q Consensus 179 ~-~~~~~dvIIIDTaG~~ 195 (494)
+ +...+++|+||.-...
T Consensus 456 lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 456 LARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHHTCCSEEEESCGGGC
T ss_pred HHHhcCCcEEEECCHHHh
Confidence 2 3467999999985543
No 421
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.40 E-value=0.0019 Score=58.50 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=26.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D 138 (494)
+.+|+|+|++||||||++..|+..+ | ...++.|
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l---~--~~~i~~d 36 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL---G--FKKLSTG 36 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH---T--CEEECHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---C--CeEecHH
Confidence 4579999999999999999999665 3 3456664
No 422
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.40 E-value=0.0027 Score=57.37 Aligned_cols=33 Identities=33% Similarity=0.529 Sum_probs=27.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D 138 (494)
+.+|+|+|++||||||++..|+.++ | ..+++.|
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l---~--~~~i~~d 38 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF---G--WVHLSAG 38 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh---C--CeEeeHH
Confidence 5689999999999999999999655 3 4567775
No 423
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.39 E-value=0.0021 Score=59.42 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=27.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~ 140 (494)
..+|+|+|++||||||++..|+..+ | ..+++.|.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l---~--~~~i~~d~~ 59 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL---N--VPFIDLDWY 59 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH---T--CCEEEHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc---C--CCEEcchHH
Confidence 4579999999999999999999766 3 335676653
No 424
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.39 E-value=0.008 Score=62.34 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=28.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~ 139 (494)
+.+|+|+||+||||||++..||..+. ..+|++|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~-----~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN-----GEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT-----EEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC-----CeEeecCc
Confidence 45799999999999999999997663 35899985
No 425
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.39 E-value=0.0021 Score=58.23 Aligned_cols=35 Identities=29% Similarity=0.353 Sum_probs=28.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~ 140 (494)
+..|+++|++||||||++..|+..| | ..+++.|.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l---~--~~~i~~d~~ 39 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT---K--RILYDSDKE 39 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH---C--CCEEEHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh---C--CCEEEChHH
Confidence 3579999999999999999999765 3 456777764
No 426
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.37 E-value=0.0025 Score=69.80 Aligned_cols=43 Identities=26% Similarity=0.347 Sum_probs=37.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcc
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~ 142 (494)
++.+|.|+|++||||||++..|+.+|..+|+.+..++.|..|.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~ 93 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ 93 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhh
Confidence 4678999999999999999999999988899888888776554
No 427
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.36 E-value=0.0022 Score=61.39 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l 125 (494)
+.+|+|+|++||||||++..|+.+|
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999766
No 428
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.36 E-value=0.0015 Score=60.65 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l 125 (494)
+.+|+|+|++||||||++..|+..+
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4579999999999999999999765
No 429
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.34 E-value=0.0025 Score=61.65 Aligned_cols=34 Identities=26% Similarity=0.255 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~ 140 (494)
.+|+++|++||||||++..||..+ + ..+++.|.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~---~--~~~i~~D~~ 35 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET---G--WPVVALDRV 35 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH---C--CCEEECCSG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC---C--CeEEeccHH
Confidence 368999999999999999999654 2 457888874
No 430
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.33 E-value=0.0023 Score=59.91 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=26.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D 138 (494)
+..|+|+|++||||||++..|+.+| | ...++.|
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d 36 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF---H--AAHLATG 36 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc---C--ceEEehh
Confidence 4579999999999999999999765 3 3456664
No 431
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.33 E-value=0.0025 Score=56.33 Aligned_cols=20 Identities=35% Similarity=0.614 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 011076 102 SVIMFVGLQGSGKTTTCTKY 121 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kL 121 (494)
.+|+|+|++||||||++..|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999988
No 432
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.32 E-value=0.0017 Score=58.04 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=25.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~ 139 (494)
.+|+|+|++||||||++..|+..+ ...+++.|.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l-----~~~~id~d~ 37 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL-----NMEFYDSDQ 37 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT-----TCEEEEHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh-----CCCEEeccH
Confidence 469999999999999999999543 345667654
No 433
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.32 E-value=0.0017 Score=60.67 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l 125 (494)
+.+|+|+||+||||||++..|+..+
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999543
No 434
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.31 E-value=0.01 Score=59.07 Aligned_cols=72 Identities=15% Similarity=0.176 Sum_probs=43.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
+.-++|.|+||+|||+++..+|..+ +..+..|++.. .... +. ..........+..+.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~~-----------l~~~----~~-----g~~~~~~~~~f~~a~ 107 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSD-----------LVSK----WM-----GESEKLVKQLFAMAR 107 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHHH-----------HHTT----TG-----GGHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchHH-----------Hhhc----cc-----chHHHHHHHHHHHHH
Confidence 4569999999999999999998764 44555555411 0000 00 011223334444555
Q ss_pred ccCCcEEEEeCCCCC
Q 011076 181 KENCDLIIVDTSGRH 195 (494)
Q Consensus 181 ~~~~dvIIIDTaG~~ 195 (494)
.....+++||-....
T Consensus 108 ~~~~~vl~iDEid~l 122 (322)
T 3eie_A 108 ENKPSIIFIDQVDAL 122 (322)
T ss_dssp HTSSEEEEEECGGGG
T ss_pred hcCCeEEEechhhhh
Confidence 556789999976543
No 435
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.30 E-value=0.002 Score=59.41 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=26.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~ 140 (494)
+|+++|++||||||++..|+. ..+.+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~------~g~~~i~~d~~ 34 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE------LGAYVLDADKL 34 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH------TTCEEEEHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH------CCCEEEEccHH
Confidence 699999999999999999994 34677888753
No 436
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.30 E-value=0.0023 Score=60.10 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ 126 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~ 126 (494)
+..|+|+|++||||||++..|+.+|.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999997663
No 437
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.24 E-value=0.0026 Score=59.40 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=27.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~ 139 (494)
+.+|+|+|++||||||++..|+. ....++++|.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~------lg~~~id~D~ 36 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD------LGINVIDADI 36 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH------TTCEEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH------cCCEEEEccH
Confidence 56899999999999999999984 3356778774
No 438
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.23 E-value=0.0023 Score=59.45 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQ 126 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~ 126 (494)
.+++|+||+||||||+++.|+..+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4699999999999999999997653
No 439
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.19 E-value=0.0032 Score=68.40 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=38.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHhcC-CceEEEEcccCcc
Q 011076 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKG-WKPALVCADTFRA 142 (494)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g-~kVaiVs~D~~r~ 142 (494)
.++.+|.|+|++||||||++..|+..|..+| +.+.+++.|..|.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~ 438 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRH 438 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHH
Confidence 3467899999999999999999999998878 8888898877554
No 440
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.19 E-value=0.0071 Score=58.49 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=25.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEE
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs 136 (494)
+..++|+|+||+||||++..++..+ +.....++
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~ 96 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEES---NFPFIKIC 96 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEe
Confidence 5679999999999999999999763 44544443
No 441
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.18 E-value=0.0029 Score=57.79 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQ 126 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~ 126 (494)
+|+|+|++||||||++..|+.+|.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999997763
No 442
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.18 E-value=0.0029 Score=57.19 Aligned_cols=33 Identities=27% Similarity=0.323 Sum_probs=25.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D 138 (494)
+.+|+|+|++||||||++..|+..+ | ...++.|
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~---~--~~~~~~d 43 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS---G--LKYINVG 43 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh---C--CeEEEHH
Confidence 4568999999999999999999665 2 3455654
No 443
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.17 E-value=0.0029 Score=58.10 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l 125 (494)
..+++|+|++||||||++..|+..+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3579999999999999999999653
No 444
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.16 E-value=0.009 Score=59.89 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=29.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~ 139 (494)
+.+|+++||+||||||++..||.. ...-+|++|.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~-----~~~~iis~Ds 43 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI-----LPVELISVDS 43 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH-----SCEEEEECCT
T ss_pred CcEEEEECCCccCHHHHHHHHHHh-----CCCcEEeccc
Confidence 578999999999999999999964 3467899985
No 445
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.16 E-value=0.003 Score=56.14 Aligned_cols=33 Identities=21% Similarity=0.184 Sum_probs=26.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~ 140 (494)
+|+|+|++||||||++..|+.+| | ..+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l---~--~~~i~~d~~ 34 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL---N--IPFYDVDEE 34 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH---T--CCEEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---C--CCEEECcHH
Confidence 58999999999999999999765 3 346777654
No 446
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.15 E-value=0.0023 Score=58.75 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l 125 (494)
+.+|+|+|++||||||++..|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999999665
No 447
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.15 E-value=0.012 Score=57.74 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=23.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcC
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQKKG 129 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~~~g 129 (494)
++|.|++|+||||++..++..+...+
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l~~~~ 74 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARELFGEN 74 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHHGGG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCc
Confidence 89999999999999999998876443
No 448
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.14 E-value=0.022 Score=57.75 Aligned_cols=34 Identities=24% Similarity=0.166 Sum_probs=26.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
++-|+|+|+||+||||++..+|..+ +..+..|++
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~ 117 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSS 117 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeH
Confidence 3458999999999999999999776 445555554
No 449
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.13 E-value=0.01 Score=58.05 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=23.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcC
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQKKG 129 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~~~g 129 (494)
++|+|++|+||||++..++..+...+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~ 70 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRS 70 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCc
Confidence 89999999999999999998876543
No 450
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.13 E-value=0.0018 Score=58.43 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=18.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l 125 (494)
+.+|+|+|++||||||++..|+..|
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998654
No 451
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.10 E-value=0.0027 Score=59.84 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=26.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D 138 (494)
+.+|+|+|++||||||++..|+..| | ...++.|
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d 39 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF---E--LKHLSSG 39 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS---S--SEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc---C--CeEEech
Confidence 4679999999999999999999654 3 4556664
No 452
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.10 E-value=0.0034 Score=59.11 Aligned_cols=36 Identities=25% Similarity=0.456 Sum_probs=27.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEE-cccCcch
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC-ADTFRAG 143 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs-~D~~r~~ 143 (494)
+|+|+|+|||||||.+..|+..| .+.-|+ .|.+|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~-----g~~~istGdllR~~ 38 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK-----GFVHISTGDILREA 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CCeEEcHHHHHHHH
Confidence 58899999999999999999654 333344 4677653
No 453
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.10 E-value=0.0028 Score=62.36 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=29.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC
Q 011076 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (494)
Q Consensus 98 ~~~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~ 140 (494)
.+++.+|+|+|++||||||++..|+. .| ..+|++|.+
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La~----lg--~~~id~D~~ 108 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLKN----LG--AYIIDSDHL 108 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHHH----HT--CEEEEHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH----CC--CcEEehhHH
Confidence 34578999999999999999999983 25 456888753
No 454
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.09 E-value=0.003 Score=57.17 Aligned_cols=33 Identities=36% Similarity=0.451 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~ 140 (494)
+|+|+|+|||||||++..|+..| | ..+++.|.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l---g--~~~id~D~~ 36 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL---G--VGLLDTDVA 36 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH---T--CCEEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc---C--CCEEeCchH
Confidence 59999999999999999999655 3 346788764
No 455
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.08 E-value=0.045 Score=60.95 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=28.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
...++|+|+||+|||+++..++..+ +.....+++
T Consensus 488 ~~~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~ 521 (758)
T 1r6b_X 488 VGSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDM 521 (758)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHh---cCCEEEEec
Confidence 3569999999999999999999887 455656665
No 456
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.08 E-value=0.0047 Score=62.30 Aligned_cols=80 Identities=15% Similarity=0.129 Sum_probs=45.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHhc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~~ 181 (494)
.+++++|++||||||+++.|+.++......+.+=+.+.+... . .+..+.++.. .. .-.+.++..+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~------~--~~~~i~~~~g-gg----~~~r~~la~aL~ 238 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFK------H--HKNYTQLFFG-GN----ITSADCLKSCLR 238 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCS------S--CSSEEEEECB-TT----BCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccc------c--chhEEEEEeC-CC----hhHHHHHHHHhh
Confidence 369999999999999999999766543334433322222110 0 1112222210 11 112344555555
Q ss_pred cCCcEEEEeCCCC
Q 011076 182 ENCDLIIVDTSGR 194 (494)
Q Consensus 182 ~~~dvIIIDTaG~ 194 (494)
.+.|++|+|-|-.
T Consensus 239 ~~p~ilildE~~~ 251 (330)
T 2pt7_A 239 MRPDRIILGELRS 251 (330)
T ss_dssp SCCSEEEECCCCS
T ss_pred hCCCEEEEcCCCh
Confidence 6889999998754
No 457
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.07 E-value=0.0036 Score=67.57 Aligned_cols=41 Identities=29% Similarity=0.357 Sum_probs=37.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r 141 (494)
+.+|.|+|++||||||++..|+..|..+|+++.+++.|..|
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir 412 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVR 412 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhh
Confidence 57899999999999999999999999889999999988654
No 458
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.06 E-value=0.0042 Score=59.61 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcc
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D 138 (494)
++.+|+|+|+|||||||++..|+..+ ....+++|
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~-----g~~~is~~ 61 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH-----CYCHLSTG 61 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH-----CCEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh-----CCeEEecH
Confidence 36789999999999999999999655 34556663
No 459
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.05 E-value=0.013 Score=65.40 Aligned_cols=36 Identities=19% Similarity=0.128 Sum_probs=31.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
..++|+|+||+|||+++..++..+...+..+.-+++
T Consensus 522 ~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~ 557 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELARALAESIFGDEESMIRIDM 557 (758)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEec
Confidence 469999999999999999999998777777777777
No 460
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.04 E-value=0.0038 Score=58.37 Aligned_cols=33 Identities=30% Similarity=0.346 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~ 139 (494)
.+|+|+|++||||||++..|+..| .+..++.|.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~-----g~~~~d~g~ 38 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL-----QWHLLDSGA 38 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH-----TCEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-----CCCcccCcc
Confidence 479999999999999999999543 245566653
No 461
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.03 E-value=0.0039 Score=57.19 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQ 126 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~ 126 (494)
.++++|++||||||++..|+..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998774
No 462
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.02 E-value=0.0036 Score=58.68 Aligned_cols=26 Identities=12% Similarity=0.289 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYH 125 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l 125 (494)
++.+|+|+||+||||||+++.|+..+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 35689999999999999999999553
No 463
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.01 E-value=0.034 Score=51.93 Aligned_cols=106 Identities=13% Similarity=0.117 Sum_probs=60.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc-CcchhHHHHHhhhhccCc--ceeccCCCCChHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT-FRAGAFDQLKQNATKAKI--PFYGSYTESDPVRIAVEGVE 177 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~-~r~~a~~qLk~~~~~~~i--~~~~~~~~~dp~~i~~~~l~ 177 (494)
..+..++|+.|+||||.+...+..+..+|++|.++.+.. .|-+ + ....+.+. +...... ..++..
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~--~---~i~S~~g~~~~A~~~~~---~~d~~~---- 87 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS--S---SFCTHDRNTMEALPACL---LRDVAQ---- 87 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGG--G---SCCHHHHHHSEEEEESS---GGGGHH----
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccch--h---hhhhccCCcccceecCC---HHHHHH----
Confidence 567888999999999888888888888899999998531 1211 0 01112221 1111111 111111
Q ss_pred HHhccCCcEEEEeCCCCCchhHHHHHHHHHHHHhcCCCEEEEEecCC
Q 011076 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS 224 (494)
Q Consensus 178 ~~~~~~~dvIIIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvDa~ 224 (494)
. ...+|+|+||-+=+. .+ ..+.+..+.. ..-..++.-+|..
T Consensus 88 ~--~~~~DvIlIDEaQFf-k~--~ve~~~~L~~-~gk~VI~~GL~~D 128 (195)
T 1w4r_A 88 E--ALGVAVIGIDEGQFF-PD--IVEFCEAMAN-AGKTVIVAALDGT 128 (195)
T ss_dssp H--HHTCSEEEESSGGGC-TT--HHHHHHHHHH-TTCEEEEEEESBC
T ss_pred h--ccCCCEEEEEchhhh-HH--HHHHHHHHHH-CCCeEEEEecccc
Confidence 1 236899999999888 32 4444444432 2334455556654
No 464
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.98 E-value=0.0039 Score=55.60 Aligned_cols=34 Identities=35% Similarity=0.449 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~ 140 (494)
.+|+|+|++||||||++..|+..| | ..+++.|.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l---g--~~~id~d~~ 36 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL---G--YEFVDTDIF 36 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH---T--CEEEEHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh---C--CcEEcccHH
Confidence 369999999999999999999765 3 346777654
No 465
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.95 E-value=0.033 Score=56.50 Aligned_cols=38 Identities=26% Similarity=0.197 Sum_probs=30.0
Q ss_pred CeEEEE--EcCCCCcHHHHHHHHHHHHHhc------CCceEEEEcc
Q 011076 101 PSVIMF--VGLQGSGKTTTCTKYAYYHQKK------GWKPALVCAD 138 (494)
Q Consensus 101 ~~vI~l--vG~~GvGKTTl~~kLA~~l~~~------g~kVaiVs~D 138 (494)
+..+++ +|++|+||||++..++..+... +..+.-+++.
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAF 95 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGG
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECC
Confidence 456777 9999999999999999888653 5566666653
No 466
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.94 E-value=0.0039 Score=56.11 Aligned_cols=33 Identities=30% Similarity=0.425 Sum_probs=26.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~ 140 (494)
+|+|+|++||||||++..||..| | ...++.|.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l---~--~~~~d~d~~ 38 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL---D--LVFLDSDFL 38 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH---T--CEEEEHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc---C--CCEEcccHH
Confidence 58999999999999999999655 2 456777653
No 467
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.93 E-value=0.0045 Score=57.53 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=24.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D 138 (494)
.|+|+|++||||||++..|+..+ | ..+++.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---~--~~~i~~d 32 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY---E--IPHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---C--CCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CcEeeHH
Confidence 48899999999999999998654 3 4456663
No 468
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.91 E-value=0.0039 Score=58.42 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=26.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D 138 (494)
...|+|+|+|||||||++..|+.+| | ...++.|
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d 37 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY---G--LAHLSTG 37 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh---C--ceEEehh
Confidence 3569999999999999999999776 3 4456664
No 469
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.88 E-value=0.0044 Score=56.41 Aligned_cols=22 Identities=36% Similarity=0.685 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAY 123 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~ 123 (494)
.+++|+|++||||||++..|+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4689999999999999999984
No 470
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.87 E-value=0.0058 Score=62.36 Aligned_cols=26 Identities=35% Similarity=0.298 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHh
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQK 127 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~ 127 (494)
.+++++|++||||||+++.|+.++..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 36999999999999999999966544
No 471
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.84 E-value=0.0058 Score=57.90 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D 138 (494)
+..|+|+|++||||||++..|+.+|. ...++.|
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~-----~~~i~~d 48 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC-----VCHLATG 48 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT-----CEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC-----CceecHH
Confidence 46799999999999999999997763 4566664
No 472
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.84 E-value=0.0076 Score=62.89 Aligned_cols=38 Identities=24% Similarity=0.151 Sum_probs=30.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D 138 (494)
..+++|+|++|||||||++.|+.++.....+|.++..+
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 46799999999999999999998886655566666543
No 473
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.81 E-value=0.0041 Score=58.65 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l 125 (494)
..+++|+|++||||||++..|+..+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3469999999999999999999655
No 474
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.80 E-value=0.027 Score=59.71 Aligned_cols=71 Identities=20% Similarity=0.174 Sum_probs=42.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~~ 180 (494)
|+-|+|+|+||+||||++..++..+ +....-+++..+. .. +.+ ......+..+..+.
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~---~~~f~~is~~~~~-----------~~----~~g-----~~~~~~r~lf~~A~ 105 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEA---NVPFFHISGSDFV-----------EL----FVG-----VGAARVRDLFAQAK 105 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGTT-----------TC----CTT-----HHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHHHHH-----------HH----Hhc-----ccHHHHHHHHHHHH
Confidence 3348999999999999999999654 4444444441110 00 000 01122334455555
Q ss_pred ccCCcEEEEeCCCC
Q 011076 181 KENCDLIIVDTSGR 194 (494)
Q Consensus 181 ~~~~dvIIIDTaG~ 194 (494)
...+.++|||-+..
T Consensus 106 ~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 106 AHAPCIVFIDEIDA 119 (476)
T ss_dssp HTCSEEEEEETGGG
T ss_pred hcCCCEEEEechhh
Confidence 56788999998743
No 475
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.80 E-value=0.01 Score=55.31 Aligned_cols=46 Identities=30% Similarity=0.400 Sum_probs=35.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHH
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK 149 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk 149 (494)
.|+|=|.-||||||.+..|+.+|..+|++|.++.. |......+.+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre-P~~t~~~~~ir 47 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE-PGGTETGEKIR 47 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES-SCSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC-CCCCcHHHHHH
Confidence 47788999999999999999999999999876654 44333333333
No 476
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.78 E-value=0.0042 Score=57.78 Aligned_cols=35 Identities=31% Similarity=0.423 Sum_probs=29.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~ 140 (494)
..+|.++|.+||||||++..|+..+ | +.++++|.+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l---g--~~vid~D~~ 46 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY---G--AHVVNVDRI 46 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH---C--CEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc---C--CEEEECcHH
Confidence 5689999999999999999999543 3 678898864
No 477
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.78 E-value=0.0059 Score=54.45 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=26.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~ 139 (494)
..+|+|+|.+||||||++..|+..| |. .+++.|.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l---g~--~~id~D~ 40 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL---KL--EVLDTDM 40 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH---TC--CEEEHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh---CC--CEEEChH
Confidence 3579999999999999999999655 33 4567764
No 478
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.72 E-value=0.0049 Score=57.36 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc-ccCc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA-DTFR 141 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~-D~~r 141 (494)
.|+|+|+|||||||++..|+..+ ...+++. |..|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-----~~~~i~~d~~~r 36 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY-----GIPHISTGDMFR 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS-----SCCEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCcEEeHHHHHH
Confidence 48899999999999999998543 3456676 3444
No 479
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.70 E-value=0.0059 Score=56.74 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l 125 (494)
..+++|+|++||||||+++.|+..+
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3479999999999999999999654
No 480
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.69 E-value=0.009 Score=56.17 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=27.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEccc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~ 139 (494)
...|+|+|++|+||||++..|+ ++|. -+|+.|.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La----~~g~--~iIsdDs 66 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELV----QRGH--RLIADDR 66 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHH----TTTC--EEEESSE
T ss_pred CEEEEEECCCCCCHHHHHHHHH----HhCC--eEEecch
Confidence 4569999999999999999888 3355 7888875
No 481
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.68 E-value=0.0064 Score=57.35 Aligned_cols=31 Identities=26% Similarity=0.217 Sum_probs=25.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D 138 (494)
.|+|+|++||||||++..|+.+| |. ..+++|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l---g~--~~i~~d 32 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY---SL--AHIESG 32 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---TC--EEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CC--eEEchH
Confidence 58999999999999999999776 33 455653
No 482
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.02 Score=60.27 Aligned_cols=70 Identities=20% Similarity=0.186 Sum_probs=43.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
.|+-|+|.||||+|||+++.++|..+ +.....|++... .. ..........+.....+
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s~L-------------------~s-k~vGesek~ir~lF~~A 298 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRT---DATFIRVIGSEL-------------------VQ-KYVGEGARMVRELFEMA 298 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGGGG-------------------CC-CSSSHHHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhHHh-------------------hc-ccCCHHHHHHHHHHHHH
Confidence 35679999999999999999999654 444555554110 00 01111233445555666
Q ss_pred hccCCcEEEEeCC
Q 011076 180 KKENCDLIIVDTS 192 (494)
Q Consensus 180 ~~~~~dvIIIDTa 192 (494)
+....-+|++|-.
T Consensus 299 r~~aP~IIfiDEi 311 (467)
T 4b4t_H 299 RTKKACIIFFDEI 311 (467)
T ss_dssp HHTCSEEEEEECC
T ss_pred HhcCCceEeeccc
Confidence 6666778888853
No 483
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.68 E-value=0.0088 Score=58.44 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=23.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcC
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQKKG 129 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~~~g 129 (494)
++|.|++|+||||++..++..+...+
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~~~~ 66 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLFGEN 66 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHTTC
T ss_pred EEEECcCCcCHHHHHHHHHHHhcCCc
Confidence 89999999999999999998876443
No 484
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.64 E-value=0.0069 Score=56.47 Aligned_cols=30 Identities=20% Similarity=0.208 Sum_probs=24.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
.|+|+|++||||||++..|+.++ |. .+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---g~--~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY---GI--PQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---CC--CEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CC--eEEeH
Confidence 48999999999999999999766 43 34565
No 485
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.60 E-value=0.012 Score=61.73 Aligned_cols=35 Identities=17% Similarity=0.106 Sum_probs=26.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
++-|+|+|+||+||||++..+|..+ .+..+..|++
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~~ 201 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISS 201 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEECC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEEeH
Confidence 4679999999999999999999765 2334444444
No 486
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.60 E-value=0.017 Score=65.13 Aligned_cols=46 Identities=24% Similarity=0.302 Sum_probs=35.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh-cCCceEEEEcccCcchhHHHHHhh
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADTFRAGAFDQLKQN 151 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~-~g~kVaiVs~D~~r~~a~~qLk~~ 151 (494)
+.++.|+||+||||++..++.++.+ .+.+|++++. ...|.++|...
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~---tn~A~~~l~~~ 419 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP---SNIAVDQLTEK 419 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEES---SHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcC---cHHHHHHHHHH
Confidence 5788999999999999999999887 5777777665 34555555443
No 487
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=95.58 E-value=0.14 Score=51.95 Aligned_cols=112 Identities=21% Similarity=0.256 Sum_probs=67.0
Q ss_pred CeEEEEEcCC-CCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChH-HHHHHHHHH
Q 011076 101 PSVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPV-RIAVEGVET 178 (494)
Q Consensus 101 ~~vI~lvG~~-GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~-~i~~~~l~~ 178 (494)
.+.|.++|.- .+||||++..|...+.++|+++..+.+-.. ..+ .+...+++.- ....+.+ ......+..
T Consensus 169 ~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqt-----g~l--i~~~~gv~~D--~~~~~~~ag~~e~~i~~ 239 (350)
T 2g0t_A 169 IKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQT-----GIL--IGADAGYVID--AVPADFVSGVVEKAVLK 239 (350)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHH-----HHH--TTCSEECCGG--GSBGGGHHHHHHHHHHH
T ss_pred ceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCce-----eee--eccCCCCCCC--ceecchhhHHHHhhHHH
Confidence 5678889875 999999999999999999999998776211 001 1111222211 1111111 112222333
Q ss_pred HhccCCcEEEEeCCCCCchh--HHHHHHHHHHHHhcCCCEEEEEecCC
Q 011076 179 FKKENCDLIIVDTSGRHKQE--AALFEEMRQVSEATNPDLVIFVMDSS 224 (494)
Q Consensus 179 ~~~~~~dvIIIDTaG~~~~~--~~l~~el~~i~~~~~~d~vllVvDa~ 224 (494)
+..+.+|+++|.-+|-.... ... -..+.....||.++++-++.
T Consensus 240 ~~~~~~D~ivVEGqGgl~~P~~~~v---~~~ll~g~~p~~vIl~h~~~ 284 (350)
T 2g0t_A 240 LEKTGKEIVFVEGQGALRHPAYGQV---TLGLLYGSNPDVVFLVHDPS 284 (350)
T ss_dssp HHHTTCSEEEEECCSCTTCTTTHHH---HHHHHHHHCCSEEEEECCTT
T ss_pred hhhcCCCEEEEccCeeccccCchHH---HHHHHcCCCCCEEEEEeCCC
Confidence 33568999999998863221 111 11344556899999988654
No 488
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.56 E-value=0.045 Score=55.90 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=26.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
+..++|+|+||+|||+++..+|.. .+..+..+++
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~---~~~~~~~v~~ 181 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE---SNATFFNISA 181 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH---TTCEEEEECS
T ss_pred CceEEEECCCCCCHHHHHHHHHHh---hcCcEEEeeH
Confidence 456999999999999999999854 3555555555
No 489
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.55 E-value=0.059 Score=53.57 Aligned_cols=24 Identities=17% Similarity=0.061 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYY 124 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~ 124 (494)
+..++|.|++|+||||++..+|..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999964
No 490
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.53 E-value=0.051 Score=54.85 Aligned_cols=34 Identities=29% Similarity=0.287 Sum_probs=26.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
+..++|+|+||+||||++..+|..+ +.....+++
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~~ 84 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL---DVPFTMADA 84 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEech
Confidence 3459999999999999999999776 445555554
No 491
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.53 E-value=0.043 Score=54.47 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=22.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHh
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQK 127 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~~ 127 (494)
++|.|+||+||||++..++..+..
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~~ 84 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELYG 84 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 899999999999999999998763
No 492
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.53 E-value=0.0041 Score=58.74 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=16.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH-HHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYA-YYH 125 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA-~~l 125 (494)
+..+++|+|++||||||++..|+ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34589999999999999999998 665
No 493
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.52 E-value=0.0092 Score=55.31 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 011076 104 IMFVGLQGSGKTTTCTKYAYY 124 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~ 124 (494)
|+|+||+||||||++.+|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999998743
No 494
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.52 E-value=0.013 Score=59.49 Aligned_cols=33 Identities=33% Similarity=0.312 Sum_probs=26.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
..++|+|+||+||||++..+|..+ +..+..+++
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l---~~~~~~~~~ 105 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHL---DIPIAISDA 105 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEG
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh---CCCEEEecc
Confidence 349999999999999999999766 555555655
No 495
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.51 E-value=0.027 Score=63.31 Aligned_cols=69 Identities=20% Similarity=0.196 Sum_probs=43.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccCcchhHHHHHhhhhccCcceeccCCCCChHHHHHHHHHHH
Q 011076 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (494)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~r~~a~~qLk~~~~~~~i~~~~~~~~~dp~~i~~~~l~~~ 179 (494)
.|+-|+|.||||+|||+++.++|..+ |..+..|++ .... . ....+.....++.+..+
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~el---g~~~~~v~~-----------~~l~--------s-k~~gese~~lr~lF~~A 293 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANET---GAFFFLING-----------PEIM--------S-KLAGESESNLRKAFEEA 293 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTT---TCEEEEEEH-----------HHHH--------S-SCTTHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh---CCeEEEEEh-----------HHhh--------c-ccchHHHHHHHHHHHHH
Confidence 46779999999999999999999432 445555554 1100 0 01111223345556666
Q ss_pred hccCCcEEEEeC
Q 011076 180 KKENCDLIIVDT 191 (494)
Q Consensus 180 ~~~~~dvIIIDT 191 (494)
+....-+|+||-
T Consensus 294 ~~~~PsIIfIDE 305 (806)
T 3cf2_A 294 EKNAPAIIFIDE 305 (806)
T ss_dssp TTSCSEEEEEES
T ss_pred HHcCCeEEEEeh
Confidence 666777889885
No 496
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.50 E-value=0.0083 Score=55.03 Aligned_cols=33 Identities=15% Similarity=0.234 Sum_probs=27.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEcccC
Q 011076 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (494)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~D~~ 140 (494)
+|.++|++||||||++..|+..|. +.+++.|.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg-----~~~~d~d~~ 36 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG-----VPYLSSGLL 36 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-----CCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC-----CceeccchH
Confidence 799999999999999999996542 567777654
No 497
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.50 E-value=0.11 Score=51.84 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK 127 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~ 127 (494)
++.++|.|++|+||||++..+|..+..
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 457999999999999999999988764
No 498
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.49 E-value=0.0066 Score=57.37 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 011076 102 SVIMFVGLQGSGKTTTCTKYAYYH 125 (494)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLA~~l 125 (494)
+.++|.||||+||||++..||..+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999999999887
No 499
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.48 E-value=0.044 Score=54.79 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHh
Q 011076 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK 127 (494)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLA~~l~~ 127 (494)
++.++|.|++|+||||++..++..+..
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346899999999999999999987753
No 500
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.43 E-value=0.013 Score=54.11 Aligned_cols=30 Identities=17% Similarity=0.130 Sum_probs=24.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCceEEEEc
Q 011076 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (494)
Q Consensus 104 I~lvG~~GvGKTTl~~kLA~~l~~~g~kVaiVs~ 137 (494)
++++|.+||||||++-+|+.. |.++.-+++
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT 31 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD----APQVLYIAT 31 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS----CSSEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHhc----CCCeEEEec
Confidence 789999999999999999843 556655555
Done!