BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011077
(494 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna
Binding Domain From Homo Sapiens, Northeast Structural
Genomics Consortium Target Hr3023c
Length = 125
Score = 105 bits (261), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 75/109 (68%), Gaps = 11/109 (10%)
Query: 7 ANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSF 66
A +++P FL+K++ +V DP T+ ++ WS S NSF V+ +F++++LPKYFKH+N +SF
Sbjct: 12 AGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASF 71
Query: 67 VRQLNTYGFRK---------VDPDR--YEFANEGFLRGQKHLLKSISRR 104
VRQLN YGFRK V P+R EF + FLRGQ+ LL++I R+
Sbjct: 72 VRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRK 120
>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila
Heat Shock Transcription Factor
pdb|1HKT|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila
Heat Shock Transcription Factor
Length = 106
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 62/103 (60%), Gaps = 10/103 (9%)
Query: 12 LPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLN 71
+P FL+K++ +V+D TN ++ W+ SF++ A+F+++LLP +KH+N +SF+RQLN
Sbjct: 4 VPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLN 63
Query: 72 TYGFRKV----------DPDRYEFANEGFLRGQKHLLKSISRR 104
YGF K+ D D EF++ F R LL I R+
Sbjct: 64 MYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106
>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX
Length = 102
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 53/87 (60%), Gaps = 11/87 (12%)
Query: 13 PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNT 72
P F++K++ MV D S + WS+S S +V F +++LPKYFKHSNF+SFVRQLN
Sbjct: 13 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 72
Query: 73 YGFRKV-----------DPDRYEFANE 88
YG+ KV + R+EF NE
Sbjct: 73 YGWHKVQDVKSGSMLSNNDSRWEFENE 99
>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna In A Tail-To-Tail Orientation
pdb|1FYM|B Chain B, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna In A Tail-To-Tail Orientation
pdb|2HTS|A Chain A, Crystal Structure Of The Dna Binding Domain Of The Heat
Shock Transcription Factor
pdb|3HSF|A Chain A, Heat Shock Transcription Factor (Hsf)
Length = 92
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 53/87 (60%), Gaps = 11/87 (12%)
Query: 13 PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNT 72
P F++K++ MV D S + WS+S S +V F +++LPKYFKHSNF+SFVRQLN
Sbjct: 3 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 62
Query: 73 YGFRKV-----------DPDRYEFANE 88
YG+ KV + R+EF NE
Sbjct: 63 YGWHKVQDVKSGSMLSNNDSRWEFENE 89
>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
pdb|1FBU|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Length = 90
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 53/87 (60%), Gaps = 11/87 (12%)
Query: 13 PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNT 72
P F++K++ MV D S + WS+S S +V F +++LPKYFKHSNF+SFVRQLN
Sbjct: 1 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 60
Query: 73 YGFRKV-----------DPDRYEFANE 88
YG+ KV + R+EF NE
Sbjct: 61 YGWHKVQDVKSGSMLSNNDSRWEFENE 87
>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237a Mutation
pdb|1FBS|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237a Mutation
Length = 90
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 11/87 (12%)
Query: 13 PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNT 72
P F++K++ MV D S + WS+S S +V F +++L KYFKHSNF+SFVRQLN
Sbjct: 1 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLAKYFKHSNFASFVRQLNM 60
Query: 73 YGFRKV-----------DPDRYEFANE 88
YG+ KV + R+EF NE
Sbjct: 61 YGWHKVQDVKSGSMLSNNDSRWEFENE 87
>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237k Mutation
pdb|1FBQ|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237k Mutation
Length = 90
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 11/87 (12%)
Query: 13 PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNT 72
P F++K++ MV D S + WS+S S +V F +++L KYFKHSNF+SFVRQLN
Sbjct: 1 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLKKYFKHSNFASFVRQLNM 60
Query: 73 YGFRKV-----------DPDRYEFANE 88
YG+ KV + R+EF NE
Sbjct: 61 YGWHKVQDVKSGSMLSNNDSRWEFENE 87
>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna That Is Translationally Disordered
pdb|1FYL|A Chain A, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna In A Head-To-Head Orientation
pdb|1FYL|B Chain B, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna In A Head-To-Head Orientation
Length = 92
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 11/87 (12%)
Query: 13 PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNT 72
P F++K++ V D S + WS+S S +V F +++LPKYFKHSNF+SFVRQLN
Sbjct: 3 PAFVNKLWSXVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNX 62
Query: 73 YGFRKV-----------DPDRYEFANE 88
YG+ KV + R+EF NE
Sbjct: 63 YGWHKVQDVKSGSXLSNNDSRWEFENE 89
>pdb|3T1W|A Chain A, Structure Of The Four-Domain Fragment Fn7b89 Of Oncofetal
Fibronectin
Length = 375
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 293 SSSQISGVTLSEVPPNSGQSNMSTESRFHVPSSAISEIQCSPCVSDSVKVNPTQEKSKHN 352
++ I+G ++ P N GQ S E H S+ + SP + +V V ++ +
Sbjct: 28 TTPDITGYRITTTPTN-GQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESV 86
Query: 353 SGNDTVLPNFPQLQGIA 369
+DT++P PQL ++
Sbjct: 87 PISDTIIPEVPQLTDLS 103
>pdb|1HKQ|A Chain A, Pps10 Plasmid Dna Replication Initiator Protein Repa.
Replication Inactive, Dimeric N-Terminal Domain.
pdb|1HKQ|B Chain B, Pps10 Plasmid Dna Replication Initiator Protein Repa.
Replication Inactive, Dimeric N-Terminal Domain
Length = 132
Score = 29.3 bits (64), Expect = 4.7, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 368 IASESTISIPDVNFVLSGNGNAENLDPTALDGTMSIDADAFSPDHDVDVSPDGIHKLPRI 427
I S T+++ + VL ++ P DG ++I AD F+ +DV H +
Sbjct: 13 IESSHTLTLNEKRLVLCAASLIDSRKPLPKDGYLTIRADTFAEVFGIDVK----HAYAAL 68
Query: 428 DDA 430
DDA
Sbjct: 69 DDA 71
>pdb|4GH7|B Chain B, Crystal Structure Of Anticalin N7a In Complex With
Oncofetal Fibronectin Fragment Fn7b8
pdb|4GH7|D Chain D, Crystal Structure Of Anticalin N7a In Complex With
Oncofetal Fibronectin Fragment Fn7b8
Length = 285
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 293 SSSQISGVTLSEVPPNSGQSNMSTESRFHVPSSAISEIQCSPCVSDSVKVNPTQEKSKHN 352
++ I+G ++ P N GQ S E H S+ + SP + +V V ++ +
Sbjct: 28 TTPDITGYRITTTPTN-GQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESV 86
Query: 353 SGNDTVLPNFPQLQGIA 369
+DT++P PQL ++
Sbjct: 87 PISDTIIPEVPQLTDLS 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.127 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,143,805
Number of Sequences: 62578
Number of extensions: 581174
Number of successful extensions: 910
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 897
Number of HSP's gapped (non-prelim): 19
length of query: 494
length of database: 14,973,337
effective HSP length: 103
effective length of query: 391
effective length of database: 8,527,803
effective search space: 3334370973
effective search space used: 3334370973
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)