Query 011077
Match_columns 494
No_of_seqs 302 out of 1069
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 07:51:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011077.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011077hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0627 Heat shock transcripti 100.0 7.6E-46 1.6E-50 375.0 10.2 197 6-202 6-208 (304)
2 PF00447 HSF_DNA-bind: HSF-typ 100.0 5.9E-34 1.3E-38 246.4 6.2 93 14-106 1-102 (103)
3 smart00415 HSF heat shock fact 100.0 1.3E-33 2.7E-38 245.9 7.2 94 11-104 1-105 (105)
4 COG5169 HSF1 Heat shock transc 100.0 5.4E-32 1.2E-36 271.1 7.8 104 6-109 4-117 (282)
5 PF00178 Ets: Ets-domain; Int 95.3 0.012 2.6E-07 50.1 2.7 71 15-85 4-80 (85)
6 PF03310 Cauli_DNA-bind: Cauli 94.5 0.064 1.4E-06 48.5 5.0 57 145-204 2-58 (121)
7 smart00413 ETS erythroblast tr 92.1 0.23 5E-06 42.7 4.4 57 17-73 6-64 (87)
8 KOG3806 Predicted transcriptio 85.2 1.7 3.6E-05 41.9 5.4 65 9-73 65-131 (177)
9 PF06005 DUF904: Protein of un 82.7 5.6 0.00012 33.0 6.8 38 134-171 24-68 (72)
10 TIGR03752 conj_TIGR03752 integ 81.8 8.4 0.00018 42.4 9.6 56 132-187 70-126 (472)
11 COG3074 Uncharacterized protei 81.4 10 0.00022 31.6 7.6 37 133-169 23-59 (79)
12 PF11932 DUF3450: Protein of u 80.5 14 0.0003 36.9 10.2 66 133-201 54-119 (251)
13 PF12325 TMF_TATA_bd: TATA ele 80.5 11 0.00024 34.3 8.4 55 132-186 34-91 (120)
14 TIGR02894 DNA_bind_RsfA transc 79.1 14 0.0003 35.4 8.9 55 137-191 99-153 (161)
15 TIGR02449 conserved hypothetic 78.7 8.1 0.00018 31.6 6.3 18 159-176 45-62 (65)
16 PF04340 DUF484: Protein of un 76.6 8.6 0.00019 37.7 7.2 75 86-193 17-91 (225)
17 PF10168 Nup88: Nuclear pore c 75.2 13 0.00029 43.1 9.2 60 132-191 562-621 (717)
18 PF10473 CENP-F_leu_zip: Leuci 73.4 26 0.00057 32.7 9.0 56 133-188 57-112 (140)
19 KOG4460 Nuclear pore complex, 73.1 14 0.0003 41.5 8.2 62 133-194 586-647 (741)
20 PRK15422 septal ring assembly 71.1 31 0.00067 29.3 8.0 42 133-174 23-64 (79)
21 PF02183 HALZ: Homeobox associ 69.7 20 0.00042 27.2 6.0 40 133-172 3-42 (45)
22 PF11932 DUF3450: Protein of u 62.5 69 0.0015 32.0 10.3 67 133-202 47-113 (251)
23 KOG4005 Transcription factor X 61.7 38 0.00083 34.4 8.0 42 132-173 94-135 (292)
24 PF06005 DUF904: Protein of un 59.9 1E+02 0.0022 25.6 9.5 50 133-182 9-58 (72)
25 PF08581 Tup_N: Tup N-terminal 59.7 75 0.0016 26.9 8.3 49 134-182 3-58 (79)
26 TIGR02449 conserved hypothetic 58.8 1E+02 0.0022 25.3 9.0 54 133-186 5-58 (65)
27 PF10779 XhlA: Haemolysin XhlA 56.9 1.1E+02 0.0023 25.0 9.2 56 133-188 4-59 (71)
28 PF04111 APG6: Autophagy prote 56.5 73 0.0016 33.3 9.6 46 132-177 47-92 (314)
29 PRK10963 hypothetical protein; 52.9 55 0.0012 32.4 7.6 17 86-102 14-30 (223)
30 PF02183 HALZ: Homeobox associ 51.7 38 0.00083 25.6 4.8 33 133-165 10-42 (45)
31 KOG4360 Uncharacterized coiled 51.0 48 0.001 37.1 7.3 52 133-184 224-275 (596)
32 PF12329 TMF_DNA_bd: TATA elem 50.5 1.2E+02 0.0026 25.1 8.0 52 133-184 17-68 (74)
33 PF04156 IncA: IncA protein; 48.6 1.3E+02 0.0027 28.5 9.1 59 132-190 92-150 (191)
34 PF10473 CENP-F_leu_zip: Leuci 48.4 1.5E+02 0.0032 27.8 9.1 51 132-182 70-120 (140)
35 PF00170 bZIP_1: bZIP transcri 47.4 58 0.0013 25.7 5.6 26 133-158 31-56 (64)
36 PF01519 DUF16: Protein of unk 47.1 74 0.0016 28.3 6.5 26 153-178 71-96 (102)
37 TIGR02894 DNA_bind_RsfA transc 46.6 81 0.0018 30.2 7.2 41 133-173 109-149 (161)
38 COG5481 Uncharacterized conser 46.1 1.3E+02 0.0028 24.4 7.2 34 145-178 7-46 (67)
39 COG4942 Membrane-bound metallo 45.7 1.1E+02 0.0024 33.5 9.0 46 132-177 63-108 (420)
40 KOG4196 bZIP transcription fac 45.5 69 0.0015 29.7 6.3 42 138-186 77-118 (135)
41 KOG0977 Nuclear envelope prote 45.1 1.2E+02 0.0027 34.3 9.5 62 132-193 166-235 (546)
42 COG1579 Zn-ribbon protein, pos 45.0 75 0.0016 32.3 7.2 45 132-176 93-137 (239)
43 PF11414 Suppressor_APC: Adeno 44.3 90 0.0019 26.7 6.5 43 132-174 4-46 (84)
44 smart00338 BRLZ basic region l 44.0 60 0.0013 25.7 5.2 27 133-159 31-57 (65)
45 PRK10803 tol-pal system protei 43.3 53 0.0012 33.3 5.9 37 140-183 59-95 (263)
46 PF07407 Seadorna_VP6: Seadorn 42.6 1.1E+02 0.0024 32.6 8.1 26 130-155 34-59 (420)
47 PF08317 Spc7: Spc7 kinetochor 42.6 1.5E+02 0.0032 31.0 9.2 42 136-177 210-251 (325)
48 PF04201 TPD52: Tumour protein 41.5 80 0.0017 30.3 6.4 39 134-172 28-66 (162)
49 KOG3863 bZIP transcription fac 41.1 38 0.00083 38.5 4.9 58 89-154 480-537 (604)
50 TIGR00219 mreC rod shape-deter 41.1 74 0.0016 32.7 6.6 23 136-158 67-89 (283)
51 PRK14127 cell division protein 41.1 65 0.0014 28.9 5.4 39 137-175 32-70 (109)
52 PF04880 NUDE_C: NUDE protein, 40.8 16 0.00034 35.1 1.6 36 133-173 19-54 (166)
53 smart00787 Spc7 Spc7 kinetocho 40.8 1.7E+02 0.0038 30.7 9.4 47 136-182 205-251 (312)
54 PRK00846 hypothetical protein; 39.7 1.3E+02 0.0029 25.4 6.7 13 178-190 38-50 (77)
55 PF12325 TMF_TATA_bd: TATA ele 39.0 2.7E+02 0.0058 25.3 9.1 49 133-181 21-69 (120)
56 PF04102 SlyX: SlyX; InterPro 39.0 1E+02 0.0023 25.0 5.9 7 165-171 41-47 (69)
57 PRK10803 tol-pal system protei 38.3 2.1E+02 0.0045 29.1 9.3 51 132-182 37-87 (263)
58 COG1579 Zn-ribbon protein, pos 37.8 1.2E+02 0.0027 30.7 7.4 44 134-177 37-80 (239)
59 COG3074 Uncharacterized protei 37.7 2.3E+02 0.005 23.8 7.6 44 133-176 9-52 (79)
60 PF10224 DUF2205: Predicted co 37.2 2.6E+02 0.0057 23.8 9.0 41 135-182 8-49 (80)
61 PF04420 CHD5: CHD5-like prote 36.9 1.6E+02 0.0034 27.8 7.6 54 135-188 40-105 (161)
62 PRK06800 fliH flagellar assemb 36.9 2.7E+02 0.0058 27.6 9.2 34 133-166 36-69 (228)
63 PRK00888 ftsB cell division pr 36.8 1.1E+02 0.0024 26.9 6.2 33 136-168 28-60 (105)
64 PRK04406 hypothetical protein; 36.6 1.5E+02 0.0032 24.8 6.5 13 178-190 36-48 (75)
65 PRK04325 hypothetical protein; 36.3 1.5E+02 0.0033 24.5 6.6 11 178-188 34-44 (74)
66 PRK10884 SH3 domain-containing 35.7 1.1E+02 0.0023 30.3 6.6 25 73-97 65-91 (206)
67 PF00038 Filament: Intermediat 35.4 2.2E+02 0.0047 28.9 9.0 43 133-175 214-256 (312)
68 PRK11637 AmiB activator; Provi 35.1 2.2E+02 0.0047 30.7 9.4 35 140-174 87-121 (428)
69 PRK09039 hypothetical protein; 35.1 2E+02 0.0044 30.4 8.9 44 133-176 121-164 (343)
70 PRK11637 AmiB activator; Provi 34.9 2.7E+02 0.0058 30.0 10.0 30 147-176 87-116 (428)
71 PF12709 Kinetocho_Slk19: Cent 34.8 1.3E+02 0.0029 26.0 6.1 25 134-158 48-72 (87)
72 PF07200 Mod_r: Modifier of ru 33.7 2.3E+02 0.005 25.8 8.1 34 149-182 55-88 (150)
73 PF11559 ADIP: Afadin- and alp 33.1 3.4E+02 0.0073 24.8 9.1 44 133-176 57-100 (151)
74 PF09726 Macoilin: Transmembra 32.8 1.6E+02 0.0035 34.3 8.3 26 132-157 422-447 (697)
75 PF14282 FlxA: FlxA-like prote 32.7 2.4E+02 0.0052 24.8 7.6 24 133-156 17-40 (106)
76 PRK02793 phi X174 lysis protei 32.7 1.9E+02 0.0042 23.8 6.6 11 178-188 33-43 (72)
77 PF11559 ADIP: Afadin- and alp 32.5 3.6E+02 0.0079 24.6 9.2 42 133-174 71-112 (151)
78 TIGR02132 phaR_Bmeg polyhydrox 32.4 2E+02 0.0042 28.2 7.4 56 132-187 83-138 (189)
79 PF04156 IncA: IncA protein; 32.2 3.4E+02 0.0075 25.5 9.3 13 136-148 110-122 (191)
80 PF08826 DMPK_coil: DMPK coile 31.5 2.8E+02 0.0061 22.4 7.3 34 144-177 13-46 (61)
81 PF04849 HAP1_N: HAP1 N-termin 31.1 3.4E+02 0.0074 28.7 9.6 65 137-201 229-293 (306)
82 PRK09039 hypothetical protein; 30.7 2.7E+02 0.0058 29.5 9.0 44 134-177 129-172 (343)
83 COG3159 Uncharacterized protei 30.4 97 0.0021 31.1 5.2 77 83-192 12-88 (218)
84 PRK02119 hypothetical protein; 30.3 2.2E+02 0.0047 23.6 6.6 14 178-191 34-47 (73)
85 PF07407 Seadorna_VP6: Seadorn 30.1 1.2E+02 0.0025 32.4 6.0 52 135-186 32-85 (420)
86 TIGR03752 conj_TIGR03752 integ 30.0 2.3E+02 0.0051 31.6 8.5 41 133-173 64-104 (472)
87 PF07716 bZIP_2: Basic region 29.9 93 0.002 23.8 4.1 23 133-155 30-52 (54)
88 KOG4010 Coiled-coil protein TP 29.3 1.6E+02 0.0035 29.1 6.3 39 134-172 43-81 (208)
89 PF08781 DP: Transcription fac 29.0 3E+02 0.0064 25.9 7.9 24 136-159 2-25 (142)
90 PF04977 DivIC: Septum formati 28.5 1.7E+02 0.0036 23.3 5.6 11 191-201 52-62 (80)
91 PF12329 TMF_DNA_bd: TATA elem 28.3 1.7E+02 0.0037 24.2 5.6 40 143-182 13-52 (74)
92 PF03904 DUF334: Domain of unk 28.2 3.6E+02 0.0079 27.3 8.8 41 134-174 42-82 (230)
93 PF10226 DUF2216: Uncharacteri 27.8 3.2E+02 0.0069 27.0 8.1 22 135-156 55-76 (195)
94 COG1382 GimC Prefoldin, chaper 27.8 2.5E+02 0.0053 25.7 6.9 42 133-174 68-109 (119)
95 PRK15422 septal ring assembly 27.6 3.9E+02 0.0085 22.8 9.0 35 133-167 9-43 (79)
96 PF07106 TBPIP: Tat binding pr 27.2 2.9E+02 0.0063 25.8 7.7 56 133-188 77-134 (169)
97 PF01519 DUF16: Protein of unk 27.1 4.6E+02 0.0099 23.5 8.4 37 140-176 65-101 (102)
98 PF06156 DUF972: Protein of un 26.5 2.7E+02 0.0058 24.8 6.9 10 166-175 46-55 (107)
99 PF07106 TBPIP: Tat binding pr 26.4 2.1E+02 0.0044 26.8 6.6 23 133-155 84-106 (169)
100 PF07676 PD40: WD40-like Beta 26.1 28 0.00062 24.2 0.5 23 22-44 4-26 (39)
101 PF08946 Osmo_CC: Osmosensory 25.9 1.3E+02 0.0028 23.2 4.0 30 154-183 10-39 (46)
102 PF10211 Ax_dynein_light: Axon 25.9 3.5E+02 0.0075 26.2 8.2 31 132-162 124-154 (189)
103 PRK13729 conjugal transfer pil 25.2 2.1E+02 0.0046 31.9 7.2 38 145-182 79-116 (475)
104 PRK14143 heat shock protein Gr 25.2 5.1E+02 0.011 26.3 9.4 42 133-174 65-106 (238)
105 PF10805 DUF2730: Protein of u 25.1 3.9E+02 0.0085 23.5 7.6 37 141-177 48-86 (106)
106 PF11853 DUF3373: Protein of u 24.9 58 0.0013 36.3 2.9 37 133-177 23-59 (489)
107 PF12718 Tropomyosin_1: Tropom 24.8 3.1E+02 0.0067 25.4 7.3 40 134-173 20-59 (143)
108 PF13942 Lipoprotein_20: YfhG 24.5 3.4E+02 0.0073 26.5 7.5 42 133-174 114-155 (179)
109 PRK13922 rod shape-determining 24.2 2.1E+02 0.0046 28.7 6.6 23 136-158 70-92 (276)
110 PF05377 FlaC_arch: Flagella a 24.2 3E+02 0.0066 21.9 6.0 13 134-146 6-18 (55)
111 PF08317 Spc7: Spc7 kinetochor 24.1 4.5E+02 0.0097 27.4 9.1 23 134-156 176-198 (325)
112 PRK10884 SH3 domain-containing 24.0 3.3E+02 0.0072 26.9 7.7 6 195-200 185-190 (206)
113 KOG2751 Beclin-like protein [S 23.9 5.7E+02 0.012 28.3 10.0 44 133-176 181-224 (447)
114 PF13874 Nup54: Nucleoporin co 23.9 4.7E+02 0.01 24.0 8.3 39 136-174 45-83 (141)
115 PRK14160 heat shock protein Gr 23.9 5.8E+02 0.012 25.5 9.3 40 134-173 60-99 (211)
116 PF11853 DUF3373: Protein of u 23.2 75 0.0016 35.4 3.3 27 134-160 30-56 (489)
117 PF02403 Seryl_tRNA_N: Seryl-t 22.9 4.8E+02 0.01 22.3 7.8 47 133-179 41-90 (108)
118 PF12308 Noelin-1: Neurogenesi 22.8 2.7E+02 0.0059 24.8 6.0 50 133-182 45-94 (101)
119 PF12269 zf-CpG_bind_C: CpG bi 22.5 1.9E+02 0.0041 29.4 5.8 31 161-191 34-64 (236)
120 PF04849 HAP1_N: HAP1 N-termin 22.5 3.4E+02 0.0075 28.6 7.8 69 133-201 165-255 (306)
121 PRK10722 hypothetical protein; 22.3 3.1E+02 0.0067 28.1 7.2 29 148-176 175-203 (247)
122 PRK13923 putative spore coat p 22.2 6.4E+02 0.014 24.4 9.0 31 136-166 112-142 (170)
123 PHA02562 46 endonuclease subun 21.9 4.4E+02 0.0096 28.9 9.1 14 183-196 405-418 (562)
124 PF08606 Prp19: Prp19/Pso4-lik 21.9 2.4E+02 0.0051 23.6 5.2 34 133-166 6-39 (70)
125 KOG3850 Predicted membrane pro 21.7 5.3E+02 0.012 28.3 9.0 21 7-27 124-144 (455)
126 PRK03947 prefoldin subunit alp 21.5 4E+02 0.0087 24.0 7.3 46 132-177 91-136 (140)
127 COG3883 Uncharacterized protei 21.5 4.8E+02 0.01 27.0 8.5 62 133-194 50-114 (265)
128 smart00338 BRLZ basic region l 21.3 4E+02 0.0088 20.9 6.4 31 136-166 27-57 (65)
129 PF05377 FlaC_arch: Flagella a 21.3 3.6E+02 0.0078 21.5 5.9 22 163-184 21-42 (55)
130 PF12718 Tropomyosin_1: Tropom 21.1 4.5E+02 0.0098 24.3 7.6 35 133-167 33-67 (143)
131 PRK13169 DNA replication intia 21.1 3.9E+02 0.0084 24.1 6.8 7 167-173 47-53 (110)
132 cd00632 Prefoldin_beta Prefold 21.0 4.2E+02 0.0091 22.8 7.0 43 133-175 61-103 (105)
133 PRK14148 heat shock protein Gr 20.8 7.2E+02 0.016 24.5 9.3 43 132-174 37-79 (195)
134 PF13747 DUF4164: Domain of un 20.8 5.4E+02 0.012 22.0 7.7 24 133-156 37-60 (89)
135 PF00170 bZIP_1: bZIP transcri 20.8 4.2E+02 0.0091 20.7 6.9 11 140-150 31-41 (64)
136 PRK13923 putative spore coat p 20.7 3.8E+02 0.0082 26.0 7.1 45 147-191 109-153 (170)
137 PF08614 ATG16: Autophagy prot 20.7 6E+02 0.013 24.4 8.7 22 136-157 117-138 (194)
138 TIGR00414 serS seryl-tRNA synt 20.6 4.5E+02 0.0097 28.6 8.6 70 132-201 41-115 (418)
139 PF08227 DASH_Hsk3: DASH compl 20.5 4E+02 0.0086 20.4 6.2 29 161-190 14-42 (45)
140 PF03961 DUF342: Protein of un 20.4 4.8E+02 0.011 28.4 8.8 25 133-157 332-356 (451)
141 PF15456 Uds1: Up-regulated Du 20.2 3.6E+02 0.0078 24.6 6.6 38 134-172 21-58 (124)
142 KOG3856 Uncharacterized conser 20.1 2.4E+02 0.0052 26.1 5.3 32 145-176 13-44 (135)
143 KOG1760 Molecular chaperone Pr 20.1 4.3E+02 0.0092 24.5 6.9 41 133-173 79-119 (131)
144 PF05130 FlgN: FlgN protein; 20.1 5.6E+02 0.012 22.0 8.1 26 135-160 37-62 (143)
No 1
>KOG0627 consensus Heat shock transcription factor [Transcription]
Probab=100.00 E-value=7.6e-46 Score=375.02 Aligned_cols=197 Identities=50% Similarity=0.805 Sum_probs=176.8
Q ss_pred CCCCCCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecCchhhHhhhccCcCCCChhhHhhhhhhcCceecC--CCCc
Q 011077 6 AANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVD--PDRY 83 (494)
Q Consensus 6 ~~~~~~~~~Fl~KLy~mled~~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~--~d~~ 83 (494)
.+....+++|+.|||+||+||++++||+|+++|++|||||+.+|++.+||+||||+||+|||||||+||||||+ +++|
T Consensus 6 ~~~~~~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~w 85 (304)
T KOG0627|consen 6 LSEASGPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRW 85 (304)
T ss_pred ccccCCCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCce
Confidence 45556899999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred eEecCCcccCcccccccccccccccccCCC--Ccccc--cCCCCcceecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 84 EFANEGFLRGQKHLLKSISRRKPAQVHGQQ--QPKLQ--NSSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQ 159 (494)
Q Consensus 84 eF~h~~F~Rg~~~LL~~IkRrk~~~~~~~~--~~~~~--~~~~~~~~E~~~~~Le~Eie~LKrDk~~L~qEL~~LRQqQ~ 159 (494)
||+|++|+||+++||++|+|||+.++.... .++.. ......++...+..++.++.+|+++++.|++|+++||+++.
T Consensus 86 EF~n~~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~~ 165 (304)
T KOG0627|consen 86 EFSNPCFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFERQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQD 165 (304)
T ss_pred eecChhHhcChHHHHHHHhhhccccCCcccccCcchhhhhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999998776421 11111 11112334556678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHh
Q 011077 160 ATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFLSQLVQQ 202 (494)
Q Consensus 160 ~~e~ql~~l~~Rl~~mE~rQqqmmsfLak~lq~p~fl~~lvq~ 202 (494)
.++++++.+.+++..++.+|++++.|+++.++.|+|+.++.+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 208 (304)
T KOG0627|consen 166 ALRATIQTSKRVVKSKETRNSLILSFLARDVQSPGFLNQAPQR 208 (304)
T ss_pred HHHHHHHhhccccCchhhHHHHHhhHHHhhccCccchhcccch
Confidence 9999999999999999999999999999999999999999865
No 2
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []. Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....
Probab=100.00 E-value=5.9e-34 Score=246.36 Aligned_cols=93 Identities=58% Similarity=1.035 Sum_probs=81.7
Q ss_pred cHHHHHHHhccCCCCCCceEEcCCCCeEEEecCchhhHhhhccCcCCCChhhHhhhhhhcCceecCCC---------Cce
Q 011077 14 PFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDPD---------RYE 84 (494)
Q Consensus 14 ~Fl~KLy~mled~~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~~d---------~~e 84 (494)
+||.|||+||+|++++++|+|+++|++|||+|+.+|++.|||+||+|+||+||+||||+|||+|+... .|+
T Consensus 1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~ 80 (103)
T PF00447_consen 1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWE 80 (103)
T ss_dssp HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEE
T ss_pred ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeE
Confidence 59999999999999999999999999999999999999999999999999999999999999999643 399
Q ss_pred EecCCcccCccccccccccccc
Q 011077 85 FANEGFLRGQKHLLKSISRRKP 106 (494)
Q Consensus 85 F~h~~F~Rg~~~LL~~IkRrk~ 106 (494)
|+|++|+||++++|..|+||++
T Consensus 81 f~h~~F~r~~~~lL~~I~r~~~ 102 (103)
T PF00447_consen 81 FYHPNFRRGQPDLLSKIKRRKS 102 (103)
T ss_dssp EEETT-BTTBCCCTTTS---TT
T ss_pred ECCcCccCCCHHHHhhCccCCC
Confidence 9999999999999999999875
No 3
>smart00415 HSF heat shock factor.
Probab=100.00 E-value=1.3e-33 Score=245.86 Aligned_cols=94 Identities=64% Similarity=1.204 Sum_probs=90.7
Q ss_pred CCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecCchhhHhhhccCcCCCChhhHhhhhhhcCceecCC----------
Q 011077 11 SLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDP---------- 80 (494)
Q Consensus 11 ~~~~Fl~KLy~mled~~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~~---------- 80 (494)
.+|+|+.|||+||+|+++++||+|+++|++|+|+|+..|.+.|||+||+|+||+||+||||+|||+|+..
T Consensus 1 ~~~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~ 80 (105)
T smart00415 1 QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFT 80 (105)
T ss_pred CCCcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCC
Confidence 3789999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred -CCceEecCCcccCccccccccccc
Q 011077 81 -DRYEFANEGFLRGQKHLLKSISRR 104 (494)
Q Consensus 81 -d~~eF~h~~F~Rg~~~LL~~IkRr 104 (494)
+.|+|+|++|+||+++||.+|+||
T Consensus 81 ~~~~~F~h~~F~Rg~~~lL~~I~Rk 105 (105)
T smart00415 81 SDQWEFANPDFVRGQPELLRNIKRK 105 (105)
T ss_pred CCceEEECcCccCcCHHHHHhCcCC
Confidence 789999999999999999999986
No 4
>COG5169 HSF1 Heat shock transcription factor [Transcription]
Probab=99.97 E-value=5.4e-32 Score=271.09 Aligned_cols=104 Identities=40% Similarity=0.791 Sum_probs=95.5
Q ss_pred CCCCCCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecCchhhHhhhccCcCCCChhhHhhhhhhcCceecC-C----
Q 011077 6 AANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVD-P---- 80 (494)
Q Consensus 6 ~~~~~~~~~Fl~KLy~mled~~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~-~---- 80 (494)
++....++.|+.|||.||+++++.++|+|+++|++|||+|+..|.+.|||+||||+||+|||||||+||||||. .
T Consensus 4 s~~~~~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~ 83 (282)
T COG5169 4 SSRWSQPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQR 83 (282)
T ss_pred CcCCCchhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCcccc
Confidence 34556678999999999999999999999999999999999999999999999999999999999999999996 2
Q ss_pred -----CCceEecCCcccCcccccccccccccccc
Q 011077 81 -----DRYEFANEGFLRGQKHLLKSISRRKPAQV 109 (494)
Q Consensus 81 -----d~~eF~h~~F~Rg~~~LL~~IkRrk~~~~ 109 (494)
+.|||.|++|++|..++|++|+|+|....
T Consensus 84 ~~~n~~~wef~~~nF~~g~~~~L~~i~r~ka~~~ 117 (282)
T COG5169 84 SYYNENVWEFGNKNFQLGMIELLKKIKRKKAPSN 117 (282)
T ss_pred cccchhheeecCchhccCcHHHHHHhhhhhcCcc
Confidence 24999999999999999999999775443
No 5
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=95.35 E-value=0.012 Score=50.07 Aligned_cols=71 Identities=24% Similarity=0.412 Sum_probs=51.9
Q ss_pred HHHHHHHhccCCCCCCceEEcC-CCCeEEEecCchhhHhhh-ccCcCCCChhhHhhhhhhcCc----eecCCCCceE
Q 011077 15 FLSKIYDMVEDPSTNDIVSWSS-SNNSFIVWKVAEFSRDLL-PKYFKHSNFSSFVRQLNTYGF----RKVDPDRYEF 85 (494)
Q Consensus 15 Fl~KLy~mled~~~~~iIsWs~-~G~sFvI~d~~~F~~~vL-P~yFkh~nfsSFvRQLN~YGF----rKv~~d~~eF 85 (494)
+..=|.++|.|+++.++|+|.. .+.-|.|.|+.++++.-- -+--..-+|.++-|-|..|.= .||...++.|
T Consensus 4 Lw~FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~lWG~~k~~~~m~yeklsR~LR~yy~k~il~kv~g~r~~Y 80 (85)
T PF00178_consen 4 LWQFLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVARLWGKHKNRPNMNYEKLSRALRYYYKKGILEKVKGQRLVY 80 (85)
T ss_dssp HHHHHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHHHHHHHTTSTT-SHHHHHHHHHHHHHTTSEEEETTSTTEE
T ss_pred HHHHHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHHHHHHHcCCccccHHHHHHHHHHHhhCCeEEecCCcEEEE
Confidence 3445788999999999999999 999999999999997531 123345589999999988732 3444444444
No 6
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=94.50 E-value=0.064 Score=48.53 Aligned_cols=57 Identities=19% Similarity=0.356 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHhhh
Q 011077 145 NVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFLSQLVQQQN 204 (494)
Q Consensus 145 ~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~rQqqmmsfLak~lq~p~fl~~lvq~~~ 204 (494)
+..+.||..+++.++.+...+..|.++++..++.+.+|.++-||++++ +...+.+-+
T Consensus 2 ~~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkD---isdkIdkCe 58 (121)
T PF03310_consen 2 ATIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKD---ISDKIDKCE 58 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHH---HHHHHHT-T
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH---HHHHHHhch
Confidence 356789999999999999999999999999999999999999999995 777766543
No 7
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=92.11 E-value=0.23 Score=42.66 Aligned_cols=57 Identities=25% Similarity=0.433 Sum_probs=44.2
Q ss_pred HHHHHhccCCCCCCceEEcC-CCCeEEEecCchhhHhhh-ccCcCCCChhhHhhhhhhc
Q 011077 17 SKIYDMVEDPSTNDIVSWSS-SNNSFIVWKVAEFSRDLL-PKYFKHSNFSSFVRQLNTY 73 (494)
Q Consensus 17 ~KLy~mled~~~~~iIsWs~-~G~sFvI~d~~~F~~~vL-P~yFkh~nfsSFvRQLN~Y 73 (494)
.=|.++|.||++.++|+|.. ++.-|.+.|+++.++.-= -+-=+.-||..+-|-|..|
T Consensus 6 ~FL~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk~~M~YeklSRaLRyy 64 (87)
T smart00413 6 QFLLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYY 64 (87)
T ss_pred HHHHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Confidence 44788999999999999998 688999999988776421 1222345788888888877
No 8
>KOG3806 consensus Predicted transcription factor [Transcription]
Probab=85.20 E-value=1.7 Score=41.95 Aligned_cols=65 Identities=20% Similarity=0.355 Sum_probs=48.4
Q ss_pred CCCCCcHHHHHHHhccCCCCCCceEEcC-CCCeEEEecCchhhHhhhc-cCcCCCChhhHhhhhhhc
Q 011077 9 GNSLPPFLSKIYDMVEDPSTNDIVSWSS-SNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTY 73 (494)
Q Consensus 9 ~~~~~~Fl~KLy~mled~~~~~iIsWs~-~G~sFvI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~Y 73 (494)
+++.-....=|-++|+|+++.++|.|.. +|--|.+.|+++-++.-=- +-=..-||.-.-|-|..|
T Consensus 65 ~sg~iqLwqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLRyy 131 (177)
T KOG3806|consen 65 GSGQIQLWQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRALRYY 131 (177)
T ss_pred CCchhhHHHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHHHH
Confidence 3344556666778899999999999999 6889999999999876422 222345777777777765
No 9
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=82.70 E-value=5.6 Score=32.99 Aligned_cols=38 Identities=26% Similarity=0.305 Sum_probs=16.3
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 134 EEEVEILKRD-------KNVLMQELVRLRQQQQATDRQLHTVGQR 171 (494)
Q Consensus 134 e~Eie~LKrD-------k~~L~qEL~~LRQqQ~~~e~ql~~l~~R 171 (494)
..+++.||.+ +..|..|..+|++.+......|..|..+
T Consensus 24 q~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 24 QMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555544 4444444444444444444333333333
No 10
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=81.83 E-value=8.4 Score=42.44 Aligned_cols=56 Identities=23% Similarity=0.286 Sum_probs=41.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 011077 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQR-VQVMEQRQQQMMSFLA 187 (494)
Q Consensus 132 ~Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~R-l~~mE~rQqqmmsfLa 187 (494)
.++.++..|.++|+.|..|..+||++...++.+++.-.+. -+.+.+.++++-+-+.
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~ 126 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQ 126 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4778899999999999999999999999999998764433 3344445555544443
No 11
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.35 E-value=10 Score=31.56 Aligned_cols=37 Identities=32% Similarity=0.435 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVG 169 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~ 169 (494)
|.-||+.||..++.|.+|+..+++....++..-..+.
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk 59 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLK 59 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999998877766655544443333
No 12
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=80.52 E-value=14 Score=36.93 Aligned_cols=66 Identities=21% Similarity=0.354 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFLSQLVQ 201 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~rQqqmmsfLak~lq~p~fl~~lvq 201 (494)
+..+++.|+++.+.|.....++..+....+.++..|.+++..++...+.+.-+|.+++. -|.++|.
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~---~L~~~v~ 119 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID---ELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh
Confidence 45555555555555555555555566666666666667777777777777777766665 4556554
No 13
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=80.52 E-value=11 Score=34.26 Aligned_cols=55 Identities=25% Similarity=0.521 Sum_probs=38.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 132 GLEEEVEILKRDKNVLMQELVRLRQQQ---QATDRQLHTVGQRVQVMEQRQQQMMSFL 186 (494)
Q Consensus 132 ~Le~Eie~LKrDk~~L~qEL~~LRQqQ---~~~e~ql~~l~~Rl~~mE~rQqqmmsfL 186 (494)
.+..++.+|.+.+..|..||++|.... .....++..|...+..++.|.+.++.+|
T Consensus 34 ~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Lell 91 (120)
T PF12325_consen 34 SLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELL 91 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777777888888777765 3334556667777777777777776655
No 14
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=79.08 E-value=14 Score=35.35 Aligned_cols=55 Identities=16% Similarity=0.375 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011077 137 VEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMH 191 (494)
Q Consensus 137 ie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~rQqqmmsfLak~lq 191 (494)
...++.++..|..|+..|+++...++.++..|.+++..+++..+.|+..+-++-+
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARk 153 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARK 153 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888999998899999999999999999888888887766543
No 15
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=78.65 E-value=8.1 Score=31.60 Aligned_cols=18 Identities=11% Similarity=0.357 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011077 159 QATDRQLHTVGQRVQVME 176 (494)
Q Consensus 159 ~~~e~ql~~l~~Rl~~mE 176 (494)
......+..|..||..||
T Consensus 45 e~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 45 EQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHhhhhhc
Confidence 333334444444444443
No 16
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=76.64 E-value=8.6 Score=37.75 Aligned_cols=75 Identities=20% Similarity=0.364 Sum_probs=31.9
Q ss_pred ecCCcccCcccccccccccccccccCCCCcccccCCCCcceecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 86 ANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQL 165 (494)
Q Consensus 86 ~h~~F~Rg~~~LL~~IkRrk~~~~~~~~~~~~~~~~~~~~~E~~~~~Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql 165 (494)
.||.|...+++||..|+=.-+ .. + .+ ......+.+||++.+.++.++
T Consensus 17 ~~PdFf~~~~~ll~~l~~ph~---~~-----------~-av------------------SL~erQ~~~LR~~~~~L~~~l 63 (225)
T PF04340_consen 17 QHPDFFERHPELLAELRLPHP---SG-----------G-AV------------------SLVERQLERLRERNRQLEEQL 63 (225)
T ss_dssp ---------------------------------------HH------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcHHHHhCHHHHHHcCCCCC---CC-----------C-cc------------------cHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999998863211 00 0 00 112234456666667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 011077 166 HTVGQRVQVMEQRQQQMMSFLAKAMHSP 193 (494)
Q Consensus 166 ~~l~~Rl~~mE~rQqqmmsfLak~lq~p 193 (494)
..|.+.-+.-|..++++..+..+++...
T Consensus 64 ~~Li~~Ar~Ne~~~~~~~~l~l~LL~a~ 91 (225)
T PF04340_consen 64 EELIENARENEAIFQRLHRLVLALLAAR 91 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 7777777777777777777777777655
No 17
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=75.21 E-value=13 Score=43.06 Aligned_cols=60 Identities=17% Similarity=0.414 Sum_probs=51.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011077 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMH 191 (494)
Q Consensus 132 ~Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~rQqqmmsfLak~lq 191 (494)
.++..+..|+.+++....||..++++.+.+...-..|.+|+...+.+|+.++.=+.++++
T Consensus 562 ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~ 621 (717)
T PF10168_consen 562 EIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQ 621 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888999999999999999999999888899999999999999998887766665
No 18
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=73.36 E-value=26 Score=32.69 Aligned_cols=56 Identities=30% Similarity=0.438 Sum_probs=43.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAK 188 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~rQqqmmsfLak 188 (494)
|..++..+..+.+.|..||..+|.....+...++.+..|+..+|..+-.+..+|..
T Consensus 57 L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~ 112 (140)
T PF10473_consen 57 LEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQE 112 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 56677777777777888888888888888888888888888888777666555543
No 19
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.09 E-value=14 Score=41.53 Aligned_cols=62 Identities=19% Similarity=0.351 Sum_probs=54.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPS 194 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~rQqqmmsfLak~lq~p~ 194 (494)
+..-+..|++.+..-.|+|..++|+...++..-..|.+|......+|.-+|..+.++++.++
T Consensus 586 ~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~ 647 (741)
T KOG4460|consen 586 IQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFH 647 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccc
Confidence 44456788888888899999999999988888889999999999999999999999998874
No 20
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=71.13 E-value=31 Score=29.30 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~ 174 (494)
|.-||+.||..+..|.+|+..++.....+..+-+.|.+-...
T Consensus 23 LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~ 64 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG 64 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 455778888888887777766555444444444444443333
No 21
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=69.69 E-value=20 Score=27.19 Aligned_cols=40 Identities=18% Similarity=0.350 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRV 172 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl 172 (494)
+|.+.+.||+....|..+-..|.++.+.+..++..+..++
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555666666666666666666666555555555555544
No 22
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=62.46 E-value=69 Score=31.97 Aligned_cols=67 Identities=18% Similarity=0.283 Sum_probs=44.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHh
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFLSQLVQQ 202 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~rQqqmmsfLak~lq~p~fl~~lvq~ 202 (494)
+.++-..|..+...|..|+..|+.+...++.++....+++..++++..++-.....+.- ++.+++..
T Consensus 47 ~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p---~m~~m~~~ 113 (251)
T PF11932_consen 47 WDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP---LMEQMIDE 113 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 45566667777777777777777777777777777777777777777776555544443 55555544
No 23
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=61.66 E-value=38 Score=34.41 Aligned_cols=42 Identities=19% Similarity=0.278 Sum_probs=32.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQ 173 (494)
Q Consensus 132 ~Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~ 173 (494)
.|+.+|..|-.+++.|..|-..||.+-+.+-.+=+.+..+|.
T Consensus 94 eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le 135 (292)
T KOG4005|consen 94 EMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELE 135 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 367788889999999999999998877766666666655554
No 24
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=59.91 E-value=1e+02 Score=25.63 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=33.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQM 182 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~rQqqm 182 (494)
|+..|..+=.....|..|+..|+++.......-..|.+..+.+.+.+...
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~ 58 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAW 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667776677777788888888776666666666666665555544443
No 25
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=59.74 E-value=75 Score=26.89 Aligned_cols=49 Identities=20% Similarity=0.382 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 011077 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLH-------TVGQRVQVMEQRQQQM 182 (494)
Q Consensus 134 e~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~-------~l~~Rl~~mE~rQqqm 182 (494)
.+=++.+|.+...+.+|+..++.+....++++. .+.+.|..||..+.+|
T Consensus 3 ~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~km 58 (79)
T PF08581_consen 3 NELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKM 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788899999999998888887777776544 4455566666655554
No 26
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=58.80 E-value=1e+02 Score=25.31 Aligned_cols=54 Identities=22% Similarity=0.189 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFL 186 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~rQqqmmsfL 186 (494)
|+..|+.|=.-.+.|..|-..||+++......=..|.+++.....|-..|++=|
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RL 58 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRL 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555555555555555555555555555556666665555655665555
No 27
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=56.91 E-value=1.1e+02 Score=24.97 Aligned_cols=56 Identities=5% Similarity=0.259 Sum_probs=44.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAK 188 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~rQqqmmsfLak 188 (494)
+.+++.+++.+.+.+...+..|.+.....+.++.++..+|..++..++=+..++.-
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~iiG 59 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRTIIG 59 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888777888888888888888888899999999988877766555543
No 28
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=56.53 E-value=73 Score=33.29 Aligned_cols=46 Identities=28% Similarity=0.552 Sum_probs=37.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQ 177 (494)
Q Consensus 132 ~Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~ 177 (494)
.+..+++.|+.+.+.|.+||..|.++...+..++..+......+++
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~ 92 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDE 92 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888999999999999999999888888888888777666653
No 29
>PRK10963 hypothetical protein; Provisional
Probab=52.91 E-value=55 Score=32.38 Aligned_cols=17 Identities=18% Similarity=0.378 Sum_probs=15.1
Q ss_pred ecCCcccCccccccccc
Q 011077 86 ANEGFLRGQKHLLKSIS 102 (494)
Q Consensus 86 ~h~~F~Rg~~~LL~~Ik 102 (494)
.||.|.-.+++||..|+
T Consensus 14 ~~PdFf~~h~~Ll~~L~ 30 (223)
T PRK10963 14 QNPDFFIRNARLVEQMR 30 (223)
T ss_pred HCchHHhhCHHHHHhcc
Confidence 59999999999999774
No 30
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=51.72 E-value=38 Score=25.63 Aligned_cols=33 Identities=27% Similarity=0.361 Sum_probs=18.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQL 165 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql 165 (494)
|....+.|+.++..|.+|...|+.+...+...+
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555666666666666666655555444433
No 31
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=51.04 E-value=48 Score=37.11 Aligned_cols=52 Identities=15% Similarity=0.297 Sum_probs=42.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMS 184 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~rQqqmms 184 (494)
...++.++..++..|+.+|+.++++...+.++...|.+.|+.+.++|.+|-.
T Consensus 224 kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~a 275 (596)
T KOG4360|consen 224 KTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTA 275 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3446667778888999999999999999999988999999988887777643
No 32
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=50.45 E-value=1.2e+02 Score=25.13 Aligned_cols=52 Identities=19% Similarity=0.342 Sum_probs=30.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMS 184 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~rQqqmms 184 (494)
|-+|-+.|.+....+..-+-+||.+....+.++..+..++...+..-..+-.
T Consensus 17 L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 17 LMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555566667777777777777777666666554444433
No 33
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=48.61 E-value=1.3e+02 Score=28.48 Aligned_cols=59 Identities=20% Similarity=0.331 Sum_probs=45.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011077 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAM 190 (494)
Q Consensus 132 ~Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~rQqqmmsfLak~l 190 (494)
.+..|++.+.+....+..++..++.........+....+|++.++...+.+..-+..+.
T Consensus 92 ~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 92 QLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888888887777777778888888888877777766665555
No 34
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=48.45 E-value=1.5e+02 Score=27.82 Aligned_cols=51 Identities=24% Similarity=0.301 Sum_probs=28.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQM 182 (494)
Q Consensus 132 ~Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~rQqqm 182 (494)
.|+.++..|+.++..|.+++...+.+...++.....+...|+..|+..-+|
T Consensus 70 ~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~ 120 (140)
T PF10473_consen 70 QLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQL 120 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 355556666666666666666666655555555555555555555443333
No 35
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=47.41 E-value=58 Score=25.68 Aligned_cols=26 Identities=38% Similarity=0.558 Sum_probs=12.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQ 158 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ 158 (494)
|+.++..|..++..|..++..|+++.
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~ 56 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEI 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444444444433
No 36
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=47.07 E-value=74 Score=28.34 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 153 RLRQQQQATDRQLHTVGQRVQVMEQR 178 (494)
Q Consensus 153 ~LRQqQ~~~e~ql~~l~~Rl~~mE~r 178 (494)
.|..++...-..|+.+.++|+.|..|
T Consensus 71 el~~e~k~qgktL~~I~~~L~~inkR 96 (102)
T PF01519_consen 71 ELQVEQKAQGKTLQLILKTLQSINKR 96 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444433
No 37
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=46.61 E-value=81 Score=30.23 Aligned_cols=41 Identities=24% Similarity=0.363 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQ 173 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~ 173 (494)
+..++..|+..++.|..|+..|.+++..++..+..|..-+.
T Consensus 109 l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 109 LKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666665554443
No 38
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=46.06 E-value=1.3e+02 Score=24.44 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Q 011077 145 NVLMQELVRLRQQQQATDRQLHTVGQ------RVQVMEQR 178 (494)
Q Consensus 145 ~~L~qEL~~LRQqQ~~~e~ql~~l~~------Rl~~mE~r 178 (494)
..+...+.+|||.+..++.-+..|.+ |+++|.++
T Consensus 7 aeirl~~arLrqeH~D~DaaInAmi~~~cD~L~iqRmKkK 46 (67)
T COG5481 7 AEIRLTLARLRQEHADFDAAINAMIATGCDALRIQRMKKK 46 (67)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 34566788999998888888877764 45666544
No 39
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=45.66 E-value=1.1e+02 Score=33.49 Aligned_cols=46 Identities=17% Similarity=0.330 Sum_probs=31.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQ 177 (494)
Q Consensus 132 ~Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~ 177 (494)
.|+.+|..++++.+.+..+|....-....++..+.++..++..++.
T Consensus 63 kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 63 KLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 4666777777777777777766666666667777777777766664
No 40
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=45.54 E-value=69 Score=29.73 Aligned_cols=42 Identities=12% Similarity=0.300 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 138 EILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFL 186 (494)
Q Consensus 138 e~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~rQqqmmsfL 186 (494)
+.|.+++..|++||-+|++.. ..|..++...+.+.+++..|-
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~-------s~~~~E~da~k~k~e~l~~~~ 118 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEEN-------SRLRRELDAYKSKYEALQNSA 118 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhh
Confidence 345667777777777777654 344555566666666666554
No 41
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=45.09 E-value=1.2e+02 Score=34.26 Aligned_cols=62 Identities=23% Similarity=0.337 Sum_probs=42.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCc
Q 011077 132 GLEEEVEILKRDKNVLMQELVRLRQQ-------QQATDRQLHTVGQRVQVMEQRQQ-QMMSFLAKAMHSP 193 (494)
Q Consensus 132 ~Le~Eie~LKrDk~~L~qEL~~LRQq-------Q~~~e~ql~~l~~Rl~~mE~rQq-qmmsfLak~lq~p 193 (494)
.+++++..||+++.-|+.+|.++|.+ ....++++++|.++|..+..-.. .+....+++-+.+
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~ 235 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDT 235 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc
Confidence 47888888888888888888888864 24456788888888888774222 2444444444433
No 42
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=44.97 E-value=75 Score=32.26 Aligned_cols=45 Identities=24% Similarity=0.431 Sum_probs=37.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVME 176 (494)
Q Consensus 132 ~Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE 176 (494)
.|..++..+|++...|..||+.|...+..++.++..+..++..+|
T Consensus 93 aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e 137 (239)
T COG1579 93 ALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLE 137 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888888888888888888888888887777666
No 43
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=44.31 E-value=90 Score=26.74 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=32.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (494)
Q Consensus 132 ~Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~ 174 (494)
.+-..++.|.+++..|+++|..+.+...=...+|+.+.+|+..
T Consensus 4 ~~lk~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~rq~~ 46 (84)
T PF11414_consen 4 NMLKRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQERQRH 46 (84)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788999999999999999888777777777777776543
No 44
>smart00338 BRLZ basic region leucin zipper.
Probab=43.99 E-value=60 Score=25.65 Aligned_cols=27 Identities=37% Similarity=0.576 Sum_probs=14.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQ 159 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~ 159 (494)
|+.++..|..++..|..++..|+++..
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~ 57 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELE 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555554443
No 45
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=43.26 E-value=53 Score=33.35 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 140 LKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMM 183 (494)
Q Consensus 140 LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~rQqqmm 183 (494)
|....+.|.+||.+||-+. ..+...|+.+.+||+.+.
T Consensus 59 l~~ql~~lq~ev~~LrG~~-------E~~~~~l~~~~~rq~~~y 95 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQI-------QENQYQLNQVVERQKQIY 95 (263)
T ss_pred HHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHH
Confidence 3344444445555555444 444444445555555543
No 46
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=42.59 E-value=1.1e+02 Score=32.58 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=20.5
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHH
Q 011077 130 KYGLEEEVEILKRDKNVLMQELVRLR 155 (494)
Q Consensus 130 ~~~Le~Eie~LKrDk~~L~qEL~~LR 155 (494)
.++|..|..+||+|++.|..||.+|.
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~eVerLE 59 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKIEVERLE 59 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888888773
No 47
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=42.55 E-value=1.5e+02 Score=31.03 Aligned_cols=42 Identities=14% Similarity=0.333 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 136 EVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQ 177 (494)
Q Consensus 136 Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~ 177 (494)
+++.+|.+...+..+|...|++....+.++..+..++..++.
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~ 251 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEE 251 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444433
No 48
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=41.49 E-value=80 Score=30.30 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRV 172 (494)
Q Consensus 134 e~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl 172 (494)
++|-++|+++...+..||..|||-...-+.+...|..+|
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 667788888888888888888887777777777777665
No 49
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=41.14 E-value=38 Score=38.51 Aligned_cols=58 Identities=33% Similarity=0.423 Sum_probs=32.0
Q ss_pred CcccCcccccccccccccccccCCCCcccccCCCCcceecccCCcHHHHHHHHHHHHHHHHHHHHH
Q 011077 89 GFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRL 154 (494)
Q Consensus 89 ~F~Rg~~~LL~~IkRrk~~~~~~~~~~~~~~~~~~~~~E~~~~~Le~Eie~LKrDk~~L~qEL~~L 154 (494)
.|...+..|.+.|+||...+....+-.+. ...| -..|+.+|+.|+++++.|.+|=..+
T Consensus 480 ~lte~QLslIrDIRRRgKNkvAAQnCRKR----KLd~----I~nLE~ev~~l~~eKeqLl~Er~~~ 537 (604)
T KOG3863|consen 480 KLTEEQLSLIRDIRRRGKNKVAAQNCRKR----KLDC----ILNLEDEVEKLQKEKEQLLRERDEL 537 (604)
T ss_pred ccCHHHHHHhhccccccccchhccchhhh----HHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777888888774332221100000 0011 0247888888988888777664433
No 50
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=41.09 E-value=74 Score=32.74 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011077 136 EVEILKRDKNVLMQELVRLRQQQ 158 (494)
Q Consensus 136 Eie~LKrDk~~L~qEL~~LRQqQ 158 (494)
.+..|++||+.|..|+..|++++
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~ 89 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQL 89 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666776666666664443
No 51
>PRK14127 cell division protein GpsB; Provisional
Probab=41.09 E-value=65 Score=28.89 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 137 VEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVM 175 (494)
Q Consensus 137 ie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~m 175 (494)
++.+-.|.+.|..|+.+|+.+...++.+|..+..++...
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 445556777777777777777776777777666666544
No 52
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=40.82 E-value=16 Score=35.14 Aligned_cols=36 Identities=28% Similarity=0.509 Sum_probs=8.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQ 173 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~ 173 (494)
||.|| .|++.|.-|++|||.+...+..++ .+.+++.
T Consensus 19 LE~EL----dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~ 54 (166)
T PF04880_consen 19 LESEL----DEKENLREEVQRLKDELRDLKQEL-IVQEKLR 54 (166)
T ss_dssp HHHHH----HHHHHHHHCH----------------------
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 45555 345666666666666555444444 3444433
No 53
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=40.76 E-value=1.7e+02 Score=30.65 Aligned_cols=47 Identities=13% Similarity=0.331 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 136 EVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQM 182 (494)
Q Consensus 136 Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~rQqqm 182 (494)
++.++|.+...+..|+...+++....+.+++.+..++.....+.+.+
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~ 251 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSEL 251 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445544555555555555555555555555555555554444443
No 54
>PRK00846 hypothetical protein; Provisional
Probab=39.65 E-value=1.3e+02 Score=25.39 Aligned_cols=13 Identities=8% Similarity=-0.123 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHh
Q 011077 178 RQQQMMSFLAKAM 190 (494)
Q Consensus 178 rQqqmmsfLak~l 190 (494)
+|++.+.-|.+.+
T Consensus 38 ~qq~~I~~L~~ql 50 (77)
T PRK00846 38 DARLTGARNAELI 50 (77)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444443333
No 55
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=39.04 E-value=2.7e+02 Score=25.34 Aligned_cols=49 Identities=14% Similarity=0.282 Sum_probs=39.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQ 181 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~rQqq 181 (494)
|...|.++.-+...|..|+.+|.++......+|..+..+...++....+
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~ 69 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKE 69 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888999999999999999999999998888887776543333
No 56
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=39.03 E-value=1e+02 Score=24.99 Aligned_cols=7 Identities=29% Similarity=0.501 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 011077 165 LHTVGQR 171 (494)
Q Consensus 165 l~~l~~R 171 (494)
+..|.+|
T Consensus 41 l~~L~~r 47 (69)
T PF04102_consen 41 LRLLRER 47 (69)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 3333333
No 57
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=38.35 E-value=2.1e+02 Score=29.07 Aligned_cols=51 Identities=24% Similarity=0.305 Sum_probs=30.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQM 182 (494)
Q Consensus 132 ~Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~rQqqm 182 (494)
..+..+.+|.+..+.--+-+..|.+|...++.++..|.-.++.+....++|
T Consensus 37 ~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~ 87 (263)
T PRK10803 37 SVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQV 87 (263)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 346777777666555445555666666666666666666555544444444
No 58
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=37.83 E-value=1.2e+02 Score=30.74 Aligned_cols=44 Identities=23% Similarity=0.379 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQ 177 (494)
Q Consensus 134 e~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~ 177 (494)
..++++++++...+..|+..++.+...++..++.+.+|+...+.
T Consensus 37 ~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~ 80 (239)
T COG1579 37 KAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE 80 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666666666666666655554
No 59
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.69 E-value=2.3e+02 Score=23.78 Aligned_cols=44 Identities=16% Similarity=0.318 Sum_probs=25.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVME 176 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE 176 (494)
|+.+|..-=.....|..|+..|+++...+.+..++.......++
T Consensus 9 LE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~ 52 (79)
T COG3074 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALE 52 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence 44555544455666777777777776655555554444444443
No 60
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=37.25 E-value=2.6e+02 Score=23.79 Aligned_cols=41 Identities=24% Similarity=0.555 Sum_probs=22.6
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 135 EEVEILKRD-KNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQM 182 (494)
Q Consensus 135 ~Eie~LKrD-k~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~rQqqm 182 (494)
++++.+.++ ++.|.+|+. .++..|..|.+|+...+..+.++
T Consensus 8 ~d~e~~~~e~k~~Li~ei~-------~LQ~sL~~L~~Rve~Vk~E~~kL 49 (80)
T PF10224_consen 8 EDIEKLEKEEKEELIQEIL-------ELQDSLEALSDRVEEVKEENEKL 49 (80)
T ss_pred HHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344544443 555555554 44556677777776666554443
No 61
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=36.90 E-value=1.6e+02 Score=27.80 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 135 EEVEILKRDKNVLMQEL------------VRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAK 188 (494)
Q Consensus 135 ~Eie~LKrDk~~L~qEL------------~~LRQqQ~~~e~ql~~l~~Rl~~mE~rQqqmmsfLak 188 (494)
.+...|++|...|.+|+ .+|+.+....+.+++.+.+.+...+.+....+..+..
T Consensus 40 ~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~ 105 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLW 105 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555 5566666666666666666665555555555444433
No 62
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=36.90 E-value=2.7e+02 Score=27.60 Aligned_cols=34 Identities=32% Similarity=0.460 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLH 166 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~ 166 (494)
+..+.+.|...+..|.+|+..||+.|+.+++.=+
T Consensus 36 ~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~ 69 (228)
T PRK06800 36 IQKDHEELLAQQKSLHKELNQLRQEQQKLERERQ 69 (228)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446667777777777888888777776665433
No 63
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=36.85 E-value=1.1e+02 Score=26.93 Aligned_cols=33 Identities=6% Similarity=0.060 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 136 EVEILKRDKNVLMQELVRLRQQQQATDRQLHTV 168 (494)
Q Consensus 136 Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l 168 (494)
.+..++++.+.+.+|+.+++++...+..++..|
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555566666666666655555444444433
No 64
>PRK04406 hypothetical protein; Provisional
Probab=36.58 E-value=1.5e+02 Score=24.79 Aligned_cols=13 Identities=23% Similarity=0.411 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHh
Q 011077 178 RQQQMMSFLAKAM 190 (494)
Q Consensus 178 rQqqmmsfLak~l 190 (494)
+|++.+.-|.+-+
T Consensus 36 ~Qq~~I~~L~~ql 48 (75)
T PRK04406 36 QQQLLITKMQDQM 48 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 65
>PRK04325 hypothetical protein; Provisional
Probab=36.27 E-value=1.5e+02 Score=24.51 Aligned_cols=11 Identities=45% Similarity=0.634 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 011077 178 RQQQMMSFLAK 188 (494)
Q Consensus 178 rQqqmmsfLak 188 (494)
+|++.+.-|.+
T Consensus 34 ~Qq~~I~~L~~ 44 (74)
T PRK04325 34 RQQQTLDLLQA 44 (74)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 66
>PRK10884 SH3 domain-containing protein; Provisional
Probab=35.75 E-value=1.1e+02 Score=30.31 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=13.8
Q ss_pred cCceecC--CCCceEecCCcccCcccc
Q 011077 73 YGFRKVD--PDRYEFANEGFLRGQKHL 97 (494)
Q Consensus 73 YGFrKv~--~d~~eF~h~~F~Rg~~~L 97 (494)
.||.+|. .++--|.|..|....|.+
T Consensus 65 ~~w~~Vr~~~G~~GWV~~~~Ls~~p~~ 91 (206)
T PRK10884 65 TNYAQIRDSKGRTAWIPLKQLSTTPSL 91 (206)
T ss_pred CCEEEEEeCCCCEEeEEHHHhcCCccH
Confidence 4677774 223345566666666554
No 67
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=35.39 E-value=2.2e+02 Score=28.94 Aligned_cols=43 Identities=33% Similarity=0.449 Sum_probs=30.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVM 175 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~m 175 (494)
...++..+++..+.|..|+..|+.+...++.+|..+..++...
T Consensus 214 ~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~ 256 (312)
T PF00038_consen 214 AKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEE 256 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHH
Confidence 4566777777777777777777777777777777776666543
No 68
>PRK11637 AmiB activator; Provisional
Probab=35.07 E-value=2.2e+02 Score=30.72 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 140 LKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (494)
Q Consensus 140 LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~ 174 (494)
+.++.+.+.++|..+.++...++.++..+..++..
T Consensus 87 ~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 87 ASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333334333333333
No 69
>PRK09039 hypothetical protein; Validated
Probab=35.05 E-value=2e+02 Score=30.41 Aligned_cols=44 Identities=25% Similarity=0.262 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVME 176 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE 176 (494)
+..++..+|........+|.+|++|...++.|+..+...|...|
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae 164 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASE 164 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555554444
No 70
>PRK11637 AmiB activator; Provisional
Probab=34.94 E-value=2.7e+02 Score=30.02 Aligned_cols=30 Identities=10% Similarity=0.236 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 147 LMQELVRLRQQQQATDRQLHTVGQRVQVME 176 (494)
Q Consensus 147 L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE 176 (494)
+..++..++++...++.++..+...+...+
T Consensus 87 ~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 87 ASRKLRETQNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333444443333
No 71
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=34.85 E-value=1.3e+02 Score=26.00 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 134 EEEVEILKRDKNVLMQELVRLRQQQ 158 (494)
Q Consensus 134 e~Eie~LKrDk~~L~qEL~~LRQqQ 158 (494)
+..|..|..++..|.+|+..|+.+.
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l 72 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKL 72 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555443
No 72
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=33.69 E-value=2.3e+02 Score=25.81 Aligned_cols=34 Identities=32% Similarity=0.363 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 149 QELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQM 182 (494)
Q Consensus 149 qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~rQqqm 182 (494)
.+|..+|.+....-..+..+..+....+++++.+
T Consensus 55 ~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 55 PELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444333333333444444444444444333
No 73
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=33.08 E-value=3.4e+02 Score=24.82 Aligned_cols=44 Identities=20% Similarity=0.432 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVME 176 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE 176 (494)
+..++.++..|+..|...+.+|+.+....+..+.....+...++
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~ 100 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQ 100 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555554444444444433
No 74
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=32.79 E-value=1.6e+02 Score=34.30 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=16.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 132 GLEEEVEILKRDKNVLMQELVRLRQQ 157 (494)
Q Consensus 132 ~Le~Eie~LKrDk~~L~qEL~~LRQq 157 (494)
.|+.+|++||.|.+...+.=..||++
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsq 447 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQ 447 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 48888888888765555444444444
No 75
>PF14282 FlxA: FlxA-like protein
Probab=32.70 E-value=2.4e+02 Score=24.81 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQ 156 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQ 156 (494)
....|+.|++....|..+|..|..
T Consensus 17 ~~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 17 SDSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 377899999999999988888776
No 76
>PRK02793 phi X174 lysis protein; Provisional
Probab=32.67 E-value=1.9e+02 Score=23.82 Aligned_cols=11 Identities=18% Similarity=0.163 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 011077 178 RQQQMMSFLAK 188 (494)
Q Consensus 178 rQqqmmsfLak 188 (494)
+|++.+.-|.+
T Consensus 33 ~Qq~~I~~L~~ 43 (72)
T PRK02793 33 AHEMEMAKLRD 43 (72)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 77
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=32.54 E-value=3.6e+02 Score=24.61 Aligned_cols=42 Identities=24% Similarity=0.415 Sum_probs=20.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~ 174 (494)
+...+++|+.+.+.+.+|+..+..+...+..++..+...+..
T Consensus 71 l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~ 112 (151)
T PF11559_consen 71 LQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQ 112 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554444444444444444444443
No 78
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=32.40 E-value=2e+02 Score=28.24 Aligned_cols=56 Identities=18% Similarity=0.373 Sum_probs=36.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLA 187 (494)
Q Consensus 132 ~Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~rQqqmmsfLa 187 (494)
.++..|++|......++-.+..-.++--.+...+..|.+||.+++.+=.+|+..|.
T Consensus 83 nlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE 138 (189)
T TIGR02132 83 NLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLE 138 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777877755444444444322234445666777888888888888888887775
No 79
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=32.17 E-value=3.4e+02 Score=25.51 Aligned_cols=13 Identities=46% Similarity=0.468 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 011077 136 EVEILKRDKNVLM 148 (494)
Q Consensus 136 Eie~LKrDk~~L~ 148 (494)
++..++.+...+.
T Consensus 110 ~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 110 ELEKLKEDLQELR 122 (191)
T ss_pred HHHHHHHHHHHhH
Confidence 3333333333333
No 80
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=31.54 E-value=2.8e+02 Score=22.42 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 144 KNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQ 177 (494)
Q Consensus 144 k~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~ 177 (494)
++.+..||.+.+.-+..++.+|++...|...++.
T Consensus 13 kQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ 46 (61)
T PF08826_consen 13 KQAIQEELTKVKSANLAFESKLQEAEKRNRELEQ 46 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666665555555555555555554443
No 81
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=31.12 E-value=3.4e+02 Score=28.66 Aligned_cols=65 Identities=14% Similarity=0.167 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHH
Q 011077 137 VEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFLSQLVQ 201 (494)
Q Consensus 137 ie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~rQqqmmsfLak~lq~p~fl~~lvq 201 (494)
..+.+++...|+.+|+.|+++.+..-..-..|.++|..+...|.++..=|.-+=..-.-...+++
T Consensus 229 ~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~ 293 (306)
T PF04849_consen 229 NRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLH 293 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667778888888888777777777788888888888888876666554444433444443
No 82
>PRK09039 hypothetical protein; Validated
Probab=30.67 E-value=2.7e+02 Score=29.49 Aligned_cols=44 Identities=18% Similarity=0.187 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQ 177 (494)
Q Consensus 134 e~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~ 177 (494)
..++.+...+...|.+||..||.|...++..|....++....+.
T Consensus 129 k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~ 172 (343)
T PRK09039 129 KQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQA 172 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555566666666666666666666655555544333
No 83
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.43 E-value=97 Score=31.06 Aligned_cols=77 Identities=17% Similarity=0.257 Sum_probs=43.8
Q ss_pred ceEecCCcccCcccccccccccccccccCCCCcccccCCCCcceecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 83 YEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATD 162 (494)
Q Consensus 83 ~eF~h~~F~Rg~~~LL~~IkRrk~~~~~~~~~~~~~~~~~~~~~E~~~~~Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e 162 (494)
|-+.||.|.+-+++|+..|.=..+..+.. ..+ +- ++.++|++.+.++
T Consensus 12 yL~~hPeFf~~h~~Ll~~L~lph~~~~tV------------SLv-------e~--------------ql~r~R~~~~~Le 58 (218)
T COG3159 12 YLRQHPEFFIQHAELLEELRLPHPVAGTV------------SLV-------ER--------------QLARLRNRIRELE 58 (218)
T ss_pred HHHhCcHHHHhCHHHHHHcCCCCCCCCee------------ehH-------HH--------------HHHHHHHHHHHHH
Confidence 44579999999999999886433222111 111 22 2345555555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 011077 163 RQLHTVGQRVQVMEQRQQQMMSFLAKAMHS 192 (494)
Q Consensus 163 ~ql~~l~~Rl~~mE~rQqqmmsfLak~lq~ 192 (494)
..|..+.+--..-+.-+.+++.....+++.
T Consensus 59 ~~l~~L~~~A~~N~~lf~r~~~lq~~Ll~a 88 (218)
T COG3159 59 EELAALMENARANERLFYRLHALQLDLLDA 88 (218)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 666655555444455555665555555543
No 84
>PRK02119 hypothetical protein; Provisional
Probab=30.33 E-value=2.2e+02 Score=23.57 Aligned_cols=14 Identities=14% Similarity=0.207 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHhc
Q 011077 178 RQQQMMSFLAKAMH 191 (494)
Q Consensus 178 rQqqmmsfLak~lq 191 (494)
+|++.+.-|.+-++
T Consensus 34 ~Qq~~id~L~~ql~ 47 (73)
T PRK02119 34 EQQFVIDKMQVQLR 47 (73)
T ss_pred HHHHHHHHHHHHHH
Confidence 45554454444433
No 85
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=30.07 E-value=1.2e+02 Score=32.44 Aligned_cols=52 Identities=13% Similarity=0.218 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 011077 135 EEVEILKRDKNVLMQELVRLRQQQQATDRQLHT--VGQRVQVMEQRQQQMMSFL 186 (494)
Q Consensus 135 ~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~--l~~Rl~~mE~rQqqmmsfL 186 (494)
+|.-.|+.|+..|.+|...|+.+...++..+.. +.+|++-++..-..+...+
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kim 85 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIM 85 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 577889999999999999999998888888864 7777777765444444433
No 86
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=29.99 E-value=2.3e+02 Score=31.56 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=27.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQ 173 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~ 173 (494)
|-.++..++++.+.|..|-.+|+++.+.+..+-.++.+|++
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~ 104 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQ 104 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 55567777777777777777777776666666666655554
No 87
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=29.89 E-value=93 Score=23.85 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=11.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLR 155 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LR 155 (494)
|+.++..|..++..|.+++..|+
T Consensus 30 le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 30 LEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555544444443
No 88
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=29.34 E-value=1.6e+02 Score=29.06 Aligned_cols=39 Identities=31% Similarity=0.429 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRV 172 (494)
Q Consensus 134 e~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl 172 (494)
++|-+.|+.+...+..||+.|||-...-+.....|.++|
T Consensus 43 e~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 43 EEEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667888888888888888877776666666676665
No 89
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=29.04 E-value=3e+02 Score=25.93 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 136 EVEILKRDKNVLMQELVRLRQQQQ 159 (494)
Q Consensus 136 Eie~LKrDk~~L~qEL~~LRQqQ~ 159 (494)
++++|+.++..++..|.+-+++.+
T Consensus 2 ~~~~Le~ek~~~~~rI~~K~~~Lq 25 (142)
T PF08781_consen 2 ECEELEEEKQRRRERIKKKKEQLQ 25 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677666655555444443333
No 90
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=28.51 E-value=1.7e+02 Score=23.34 Aligned_cols=11 Identities=9% Similarity=0.691 Sum_probs=6.2
Q ss_pred cCchHHHHHHH
Q 011077 191 HSPSFLSQLVQ 201 (494)
Q Consensus 191 q~p~fl~~lvq 201 (494)
.+|.++..+..
T Consensus 52 ~~~~~ie~~AR 62 (80)
T PF04977_consen 52 NDPDYIEKVAR 62 (80)
T ss_pred CCHHHHHHHHH
Confidence 45666665553
No 91
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=28.34 E-value=1.7e+02 Score=24.24 Aligned_cols=40 Identities=13% Similarity=0.316 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 143 DKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQM 182 (494)
Q Consensus 143 Dk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~rQqqm 182 (494)
....|+.|-.+|..++....+.+..|...+...|.....+
T Consensus 13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l 52 (74)
T PF12329_consen 13 QIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKEL 52 (74)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666666666444433
No 92
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=28.20 E-value=3.6e+02 Score=27.32 Aligned_cols=41 Identities=20% Similarity=0.465 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (494)
Q Consensus 134 e~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~ 174 (494)
.+|+++||+++..+..++..+.++|...+.++..+.-.|..
T Consensus 42 nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~e 82 (230)
T PF03904_consen 42 NEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEE 82 (230)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999888888888777655
No 93
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=27.81 E-value=3.2e+02 Score=27.03 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011077 135 EEVEILKRDKNVLMQELVRLRQ 156 (494)
Q Consensus 135 ~Eie~LKrDk~~L~qEL~~LRQ 156 (494)
.||..||..++.|+-|-..||.
T Consensus 55 ~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 55 NEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677666666666555554
No 94
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=27.79 E-value=2.5e+02 Score=25.73 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~ 174 (494)
.++-++.|+...+.|...|..|+.|....+.++..|...|+.
T Consensus 68 k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 68 KEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777888888888888877776666666665555543
No 95
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=27.61 E-value=3.9e+02 Score=22.84 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=19.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHT 167 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~ 167 (494)
|+.+|...=.....|..||..|+++...+....+.
T Consensus 9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555566666666666665555555444
No 96
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=27.18 E-value=2.9e+02 Score=25.80 Aligned_cols=56 Identities=16% Similarity=0.297 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQL--HTVGQRVQVMEQRQQQMMSFLAK 188 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql--~~l~~Rl~~mE~rQqqmmsfLak 188 (494)
|..++..|+.+...|..++..|+.+...+...+ ..|...+..++.....|-+-|..
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433333332 22344444444444444444433
No 97
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=27.06 E-value=4.6e+02 Score=23.45 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 140 LKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVME 176 (494)
Q Consensus 140 LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE 176 (494)
+-++...|..|+-..-+..+.+...|+.|..||..||
T Consensus 65 QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~~E 101 (102)
T PF01519_consen 65 QGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDKME 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3334444444444333444555566666666666654
No 98
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=26.53 E-value=2.7e+02 Score=24.83 Aligned_cols=10 Identities=10% Similarity=0.391 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 011077 166 HTVGQRVQVM 175 (494)
Q Consensus 166 ~~l~~Rl~~m 175 (494)
+.|.+||...
T Consensus 46 ~~Lr~~l~~~ 55 (107)
T PF06156_consen 46 EHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 99
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=26.43 E-value=2.1e+02 Score=26.83 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=10.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLR 155 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LR 155 (494)
|.+++..|+.+...|..||..|+
T Consensus 84 L~~el~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAELASLS 106 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555555554544444443
No 100
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=26.11 E-value=28 Score=24.18 Aligned_cols=23 Identities=13% Similarity=0.371 Sum_probs=16.5
Q ss_pred hccCCCCCCceEEcCCCCeEEEe
Q 011077 22 MVEDPSTNDIVSWSSSNNSFIVW 44 (494)
Q Consensus 22 mled~~~~~iIsWs~~G~sFvI~ 44 (494)
+++.+..+.-..|++||+.|+..
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~ 26 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFT 26 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEE
T ss_pred cccCCccccCEEEecCCCEEEEE
Confidence 45666667778999999998865
No 101
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=25.93 E-value=1.3e+02 Score=23.18 Aligned_cols=30 Identities=10% Similarity=0.468 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 154 LRQQQQATDRQLHTVGQRVQVMEQRQQQMM 183 (494)
Q Consensus 154 LRQqQ~~~e~ql~~l~~Rl~~mE~rQqqmm 183 (494)
|++.+..+++.+.++-+.+..++.+.+.++
T Consensus 10 Lqe~~d~IEqkiedid~qIaeLe~KR~~Lv 39 (46)
T PF08946_consen 10 LQEHYDNIEQKIEDIDEQIAELEAKRQRLV 39 (46)
T ss_dssp -----THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHHHHH
Confidence 455677777788888888877777766653
No 102
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=25.92 E-value=3.5e+02 Score=26.23 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=17.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATD 162 (494)
Q Consensus 132 ~Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e 162 (494)
.+..++..|+.+++.|..++..++.+...++
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~e 154 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLE 154 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666655555444333
No 103
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=25.23 E-value=2.1e+02 Score=31.90 Aligned_cols=38 Identities=11% Similarity=0.242 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 145 NVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQM 182 (494)
Q Consensus 145 ~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~rQqqm 182 (494)
+.|.++|..||++.+.+..+.+++.++|..+|...+++
T Consensus 79 sELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~L 116 (475)
T PRK13729 79 AQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAAL 116 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 34444555555444444455555555555555444443
No 104
>PRK14143 heat shock protein GrpE; Provisional
Probab=25.17 E-value=5.1e+02 Score=26.29 Aligned_cols=42 Identities=19% Similarity=0.205 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~ 174 (494)
...++..|+.+...|..|+..++.++..+...+.++..|..+
T Consensus 65 ~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~k 106 (238)
T PRK14143 65 NAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSR 106 (238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888888888888888887777777777777754
No 105
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=25.05 E-value=3.9e+02 Score=23.46 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 011077 141 KRDKNVLMQELVRL--RQQQQATDRQLHTVGQRVQVMEQ 177 (494)
Q Consensus 141 KrDk~~L~qEL~~L--RQqQ~~~e~ql~~l~~Rl~~mE~ 177 (494)
.+....|.+++..| ++....++..|..|..++..++.
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~ 86 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSA 86 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33333344444443 33333444444444444444443
No 106
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=24.91 E-value=58 Score=36.30 Aligned_cols=37 Identities=24% Similarity=0.540 Sum_probs=21.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQ 177 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~ 177 (494)
+..+++.+| +.+.|.+||..|++|+. .|.+||...|+
T Consensus 23 ~~~~~~~~q-kie~L~kql~~Lk~q~~-------~l~~~v~k~e~ 59 (489)
T PF11853_consen 23 MADDIDLLQ-KIEALKKQLEELKAQQD-------DLNDRVDKVEK 59 (489)
T ss_pred hhhhhHHHH-HHHHHHHHHHHHHHhhc-------ccccccchhhH
Confidence 345555555 56666666666665554 66666665554
No 107
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=24.77 E-value=3.1e+02 Score=25.42 Aligned_cols=40 Identities=20% Similarity=0.410 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQ 173 (494)
Q Consensus 134 e~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~ 173 (494)
+..+..|..++..+-+||..|.++...++.+|..+..+|.
T Consensus 20 e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~ 59 (143)
T PF12718_consen 20 EAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLK 59 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444443
No 108
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=24.48 E-value=3.4e+02 Score=26.51 Aligned_cols=42 Identities=36% Similarity=0.321 Sum_probs=18.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~ 174 (494)
|.+|-.+.++-.+.--.||-.||++|..++.+|..-..+|.+
T Consensus 114 L~eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEn 155 (179)
T PF13942_consen 114 LSEERARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLEN 155 (179)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333333444555555555555555444444443
No 109
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=24.21 E-value=2.1e+02 Score=28.75 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011077 136 EVEILKRDKNVLMQELVRLRQQQ 158 (494)
Q Consensus 136 Eie~LKrDk~~L~qEL~~LRQqQ 158 (494)
.+..+++++..|.+|+..|+.+.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~ 92 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRL 92 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556665555555555443
No 110
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=24.16 E-value=3e+02 Score=21.91 Aligned_cols=13 Identities=23% Similarity=0.335 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 011077 134 EEEVEILKRDKNV 146 (494)
Q Consensus 134 e~Eie~LKrDk~~ 146 (494)
+.++.++....+.
T Consensus 6 En~~~~~~~~i~t 18 (55)
T PF05377_consen 6 ENELPRIESSINT 18 (55)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
No 111
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=24.10 E-value=4.5e+02 Score=27.44 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011077 134 EEEVEILKRDKNVLMQELVRLRQ 156 (494)
Q Consensus 134 e~Eie~LKrDk~~L~qEL~~LRQ 156 (494)
.+-+..|+..++.|+.|+..|++
T Consensus 176 ~~~~~~l~~~~~~L~~e~~~Lk~ 198 (325)
T PF08317_consen 176 DELLPKLRERKAELEEELENLKQ 198 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444
No 112
>PRK10884 SH3 domain-containing protein; Provisional
Probab=24.03 E-value=3.3e+02 Score=26.90 Aligned_cols=6 Identities=33% Similarity=0.484 Sum_probs=2.6
Q ss_pred HHHHHH
Q 011077 195 FLSQLV 200 (494)
Q Consensus 195 fl~~lv 200 (494)
.|.-++
T Consensus 185 lllGli 190 (206)
T PRK10884 185 LLLGLL 190 (206)
T ss_pred HHHHHH
Confidence 444444
No 113
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=23.91 E-value=5.7e+02 Score=28.31 Aligned_cols=44 Identities=25% Similarity=0.419 Sum_probs=33.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVME 176 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE 176 (494)
+..|.+.|+++...|.+++.++..++..+.+++..+..+-.+..
T Consensus 181 ~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~ 224 (447)
T KOG2751|consen 181 LLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLN 224 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888888888888888888887766644443
No 114
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=23.87 E-value=4.7e+02 Score=23.98 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 136 EVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (494)
Q Consensus 136 Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~ 174 (494)
+++.++.....+..++..|+.....+..++..+..|...
T Consensus 45 ~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~ 83 (141)
T PF13874_consen 45 EIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQE 83 (141)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 445555555555666666644444444444444444433
No 115
>PRK14160 heat shock protein GrpE; Provisional
Probab=23.86 E-value=5.8e+02 Score=25.49 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQ 173 (494)
Q Consensus 134 e~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~ 173 (494)
..++..|+.+...|..|+..++.++......+.+...|..
T Consensus 60 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~ 99 (211)
T PRK14160 60 KDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTA 99 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555444444445554443
No 116
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=23.19 E-value=75 Score=35.44 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 134 EEEVEILKRDKNVLMQELVRLRQQQQA 160 (494)
Q Consensus 134 e~Eie~LKrDk~~L~qEL~~LRQqQ~~ 160 (494)
..+|++||++.+.|.+|+..|..+...
T Consensus 30 ~qkie~L~kql~~Lk~q~~~l~~~v~k 56 (489)
T PF11853_consen 30 LQKIEALKKQLEELKAQQDDLNDRVDK 56 (489)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccch
Confidence 347777777777777776666655433
No 117
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=22.92 E-value=4.8e+02 Score=22.35 Aligned_cols=47 Identities=19% Similarity=0.445 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQ---QQATDRQLHTVGQRVQVMEQRQ 179 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQq---Q~~~e~ql~~l~~Rl~~mE~rQ 179 (494)
+..+++.|+.+++.+-.++..+... -..+..++..+.+.+..+|...
T Consensus 41 l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~ 90 (108)
T PF02403_consen 41 LQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQL 90 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777666666555442 2223333444444444444433
No 118
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=22.83 E-value=2.7e+02 Score=24.75 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQM 182 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~rQqqm 182 (494)
|.++|..+..-.++|-+--.+--|..+.++.+|..|..++...|.-.+.+
T Consensus 45 llekVqNmSqsievL~~RT~rdlqyv~~~E~~mk~l~~k~~~~e~~~~~l 94 (101)
T PF12308_consen 45 LLEKVQNMSQSIEVLDLRTQRDLQYVRKMETQMKGLESKFRQVEDDRKSL 94 (101)
T ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHhcCHHHh
Confidence 44455555444444433333333444677778888888887777665554
No 119
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=22.55 E-value=1.9e+02 Score=29.39 Aligned_cols=31 Identities=23% Similarity=0.427 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011077 161 TDRQLHTVGQRVQVMEQRQQQMMSFLAKAMH 191 (494)
Q Consensus 161 ~e~ql~~l~~Rl~~mE~rQqqmmsfLak~lq 191 (494)
++.+.+.+..+|+.++.+++.|..+++++-+
T Consensus 34 Ir~kq~~v~~~l~eLe~~~~el~~~i~~~k~ 64 (236)
T PF12269_consen 34 IRKKQQKVRNRLQELEKRFKELEAIIARAKQ 64 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444466777888888999999998887765
No 120
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=22.46 E-value=3.4e+02 Score=28.61 Aligned_cols=69 Identities=17% Similarity=0.340 Sum_probs=39.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQ------------------QQATDRQLHTVGQRV----QVMEQRQQQMMSFLAKAM 190 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQq------------------Q~~~e~ql~~l~~Rl----~~mE~rQqqmmsfLak~l 190 (494)
|..++..|..+|..|..|..+|+.. ......+|..|.+-| ......|..|.+.+++++
T Consensus 165 Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqiv 244 (306)
T PF04849_consen 165 LQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIV 244 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777888888888888877721 111222333332222 333356777888888887
Q ss_pred cCchHHHHHHH
Q 011077 191 HSPSFLSQLVQ 201 (494)
Q Consensus 191 q~p~fl~~lvq 201 (494)
.-..-+.++..
T Consensus 245 dlQ~r~k~~~~ 255 (306)
T PF04849_consen 245 DLQQRCKQLAA 255 (306)
T ss_pred HHHHHHHHHhh
Confidence 64333334433
No 121
>PRK10722 hypothetical protein; Provisional
Probab=22.35 E-value=3.1e+02 Score=28.10 Aligned_cols=29 Identities=34% Similarity=0.357 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 148 MQELVRLRQQQQATDRQLHTVGQRVQVME 176 (494)
Q Consensus 148 ~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE 176 (494)
-.++-+|||++..++.+|.....+|.++-
T Consensus 175 D~qlD~lrqq~~~Lq~~L~~t~rKLEnLT 203 (247)
T PRK10722 175 DSELDALRQQQQRLQYQLELTTRKLENLT 203 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666655543
No 122
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=22.19 E-value=6.4e+02 Score=24.44 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 136 EVEILKRDKNVLMQELVRLRQQQQATDRQLH 166 (494)
Q Consensus 136 Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~ 166 (494)
++..|+..++.|..|+.+|++++..++..+.
T Consensus 112 e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~ 142 (170)
T PRK13923 112 QIGKLQEEEEKLSWENQTLKQELAITEEDYR 142 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444333333
No 123
>PHA02562 46 endonuclease subunit; Provisional
Probab=21.93 E-value=4.4e+02 Score=28.91 Aligned_cols=14 Identities=0% Similarity=0.121 Sum_probs=6.6
Q ss_pred HHHHHHHhcCchHH
Q 011077 183 MSFLAKAMHSPSFL 196 (494)
Q Consensus 183 msfLak~lq~p~fl 196 (494)
..++...+..++|-
T Consensus 405 ~~~i~~~~~~~g~~ 418 (562)
T PHA02562 405 RGIVTDLLKDSGIK 418 (562)
T ss_pred HHHHHHHHHhhhHH
Confidence 34444454555543
No 124
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=21.92 E-value=2.4e+02 Score=23.60 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLH 166 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~ 166 (494)
+..=+..|+.+-.++|.|...||++...+..+|.
T Consensus 6 IP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs 39 (70)
T PF08606_consen 6 IPSLLSTLQNEWDALMLENFTLRKQLDQTRQELS 39 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455778899999999999999999888877774
No 125
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=21.72 E-value=5.3e+02 Score=28.26 Aligned_cols=21 Identities=10% Similarity=0.012 Sum_probs=13.7
Q ss_pred CCCCCCCcHHHHHHHhccCCC
Q 011077 7 ANGNSLPPFLSKIYDMVEDPS 27 (494)
Q Consensus 7 ~~~~~~~~Fl~KLy~mled~~ 27 (494)
.+......|+.-|..+..+..
T Consensus 124 ~s~~~sr~~~~gi~~~~~~~~ 144 (455)
T KOG3850|consen 124 PSKDKSRDFPTGIRKAKGMTE 144 (455)
T ss_pred CCcchhhhhhhHHHHHhcccc
Confidence 344455668888888877643
No 126
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=21.52 E-value=4e+02 Score=23.99 Aligned_cols=46 Identities=28% Similarity=0.453 Sum_probs=31.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQ 177 (494)
Q Consensus 132 ~Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~ 177 (494)
.+++-++.|++..+.|...+..+.++......++..+.+.++.+..
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777788777777777777776666666666666666655443
No 127
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.49 E-value=4.8e+02 Score=27.01 Aligned_cols=62 Identities=13% Similarity=0.332 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCch
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQ---RQQQMMSFLAKAMHSPS 194 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~---rQqqmmsfLak~lq~p~ 194 (494)
++.+|+.|..+.+.++.++..++.+...+...|..+...+..++. .++.++.-=+|+|+-+|
T Consensus 50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG 114 (265)
T COG3883 50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNG 114 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444444444444444444444433333344444444433332 23344444566776664
No 128
>smart00338 BRLZ basic region leucin zipper.
Probab=21.35 E-value=4e+02 Score=20.85 Aligned_cols=31 Identities=32% Similarity=0.423 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 136 EVEILKRDKNVLMQELVRLRQQQQATDRQLH 166 (494)
Q Consensus 136 Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~ 166 (494)
.+..|....+.|..|...|+.+...+..++.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~ 57 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELE 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433333333
No 129
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=21.29 E-value=3.6e+02 Score=21.50 Aligned_cols=22 Identities=14% Similarity=0.409 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011077 163 RQLHTVGQRVQVMEQRQQQMMS 184 (494)
Q Consensus 163 ~ql~~l~~Rl~~mE~rQqqmms 184 (494)
.+.+.+.+.++.+++.-+.+|+
T Consensus 21 ~en~~i~~~ve~i~envk~ll~ 42 (55)
T PF05377_consen 21 KENEEISESVEKIEENVKDLLS 42 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444445544
No 130
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=21.07 E-value=4.5e+02 Score=24.34 Aligned_cols=35 Identities=26% Similarity=0.418 Sum_probs=19.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHT 167 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~ 167 (494)
++.+|..|.+-+..|-.||-.+..+.......+..
T Consensus 33 ~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee 67 (143)
T PF12718_consen 33 KEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEE 67 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666665555544444433
No 131
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=21.07 E-value=3.9e+02 Score=24.06 Aligned_cols=7 Identities=14% Similarity=0.515 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 011077 167 TVGQRVQ 173 (494)
Q Consensus 167 ~l~~Rl~ 173 (494)
.|.+||.
T Consensus 47 ~Lr~~l~ 53 (110)
T PRK13169 47 KLRERLE 53 (110)
T ss_pred HHHHHHH
Confidence 3444444
No 132
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=20.97 E-value=4.2e+02 Score=22.85 Aligned_cols=43 Identities=21% Similarity=0.299 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVM 175 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~m 175 (494)
.++-+..|+...+.+..++.++..+...++.+|..+..+|..|
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888888888888888888888888887777654
No 133
>PRK14148 heat shock protein GrpE; Provisional
Probab=20.80 E-value=7.2e+02 Score=24.46 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=33.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (494)
Q Consensus 132 ~Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~ 174 (494)
.++.+++.|+.+...|..|+..++.++......+.++..|.++
T Consensus 37 ~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~r 79 (195)
T PRK14148 37 SVEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAER 79 (195)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888888888888888877777777777777754
No 134
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=20.78 E-value=5.4e+02 Score=22.04 Aligned_cols=24 Identities=42% Similarity=0.537 Sum_probs=12.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQ 156 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQ 156 (494)
++.++..|..|...|-+||-....
T Consensus 37 ~e~ei~~l~~dr~rLa~eLD~~~a 60 (89)
T PF13747_consen 37 LEEEIQRLDADRSRLAQELDQAEA 60 (89)
T ss_pred HHHHHHHHHhhHHHHHHHHHhHHH
Confidence 455555555555555555444433
No 135
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=20.77 E-value=4.2e+02 Score=20.75 Aligned_cols=11 Identities=27% Similarity=0.280 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 011077 140 LKRDKNVLMQE 150 (494)
Q Consensus 140 LKrDk~~L~qE 150 (494)
|......|..|
T Consensus 31 Le~~~~~L~~e 41 (64)
T PF00170_consen 31 LEEKVEELESE 41 (64)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 136
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=20.72 E-value=3.8e+02 Score=25.99 Aligned_cols=45 Identities=13% Similarity=0.330 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011077 147 LMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMH 191 (494)
Q Consensus 147 L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE~rQqqmmsfLak~lq 191 (494)
|..|+.+|+++....+..++.|.++...++.-.+.++..+.++-+
T Consensus 109 ~~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~rark 153 (170)
T PRK13923 109 LSEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMNRARR 153 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888888888888888888888777777766655443
No 137
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=20.69 E-value=6e+02 Score=24.36 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011077 136 EVEILKRDKNVLMQELVRLRQQ 157 (494)
Q Consensus 136 Eie~LKrDk~~L~qEL~~LRQq 157 (494)
.|..|+.+...|..++..+...
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~ 138 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEE 138 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 138
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=20.63 E-value=4.5e+02 Score=28.57 Aligned_cols=70 Identities=17% Similarity=0.272 Sum_probs=43.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchHHHHHHH
Q 011077 132 GLEEEVEILKRDKNVLMQELVRLRQQ----QQATDRQLHTVGQRVQVMEQRQQQMMSFLA-KAMHSPSFLSQLVQ 201 (494)
Q Consensus 132 ~Le~Eie~LKrDk~~L~qEL~~LRQq----Q~~~e~ql~~l~~Rl~~mE~rQqqmmsfLa-k~lq~p~fl~~lvq 201 (494)
.+..+++.|+.+++.+-.++..+.+. .+.+..++..+.+++..+|...+.+-.-+. .++.=|.+++--|+
T Consensus 41 ~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~vP 115 (418)
T TIGR00414 41 KLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESVP 115 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCC
Confidence 46778889999999988888765432 234445666777777777766655544332 34444555554443
No 139
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=20.46 E-value=4e+02 Score=20.37 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011077 161 TDRQLHTVGQRVQVMEQRQQQMMSFLAKAM 190 (494)
Q Consensus 161 ~e~ql~~l~~Rl~~mE~rQqqmmsfLak~l 190 (494)
+...|.+..+-|..|- .|-.+|.+|++..
T Consensus 14 L~aNL~~t~~~l~~~s-~Q~~~i~~LG~~~ 42 (45)
T PF08227_consen 14 LQANLADTENLLEMTS-IQANSIRKLGKIH 42 (45)
T ss_pred HHHhHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 3344455555555553 3347788887654
No 140
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=20.38 E-value=4.8e+02 Score=28.35 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=13.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQ 157 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQq 157 (494)
+..+++.|+++.+.+..++.++++.
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~ 356 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKN 356 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555444
No 141
>PF15456 Uds1: Up-regulated During Septation
Probab=20.18 E-value=3.6e+02 Score=24.63 Aligned_cols=38 Identities=26% Similarity=0.341 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRV 172 (494)
Q Consensus 134 e~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl 172 (494)
.+||+.||++...|-.-+.-+|.+.. ++..+.+...++
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl 58 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSL 58 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 57889888888877777777776654 555554444433
No 142
>KOG3856 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.14 E-value=2.4e+02 Score=26.14 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 145 NVLMQELVRLRQQQQATDRQLHTVGQRVQVME 176 (494)
Q Consensus 145 ~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~~mE 176 (494)
+.+..||..|-|+.+.++.+|.+|.+.+...|
T Consensus 13 e~~kaEL~elikkrqe~eetl~nLe~qIY~~E 44 (135)
T KOG3856|consen 13 EDTKAELAELIKKRQELEETLANLERQIYAFE 44 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556777777777778888888877666655
No 143
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=20.11 E-value=4.3e+02 Score=24.54 Aligned_cols=41 Identities=15% Similarity=0.284 Sum_probs=32.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQ 173 (494)
Q Consensus 133 Le~Eie~LKrDk~~L~qEL~~LRQqQ~~~e~ql~~l~~Rl~ 173 (494)
++.-.+.|...++.|..+|..|+.++..+..+|..|..-|.
T Consensus 79 ~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~LY 119 (131)
T KOG1760|consen 79 LDKLQDQLEEKKETLEKEIEELESELESISARMDELKKVLY 119 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788888899999999999988888888887765553
No 144
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=20.07 E-value=5.6e+02 Score=21.98 Aligned_cols=26 Identities=38% Similarity=0.558 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011077 135 EEVEILKRDKNVLMQELVRLRQQQQA 160 (494)
Q Consensus 135 ~Eie~LKrDk~~L~qEL~~LRQqQ~~ 160 (494)
+.++.+-.+++.+..++..+.++...
T Consensus 37 ~~l~~~~~~k~~l~~~l~~le~~r~~ 62 (143)
T PF05130_consen 37 DELEELVEEKQELLEELRELEKQRQQ 62 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777777766554
Done!