Query 011079
Match_columns 494
No_of_seqs 335 out of 2717
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 07:52:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011079.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011079hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0326 ATP-dependent RNA heli 100.0 2.5E-83 5.3E-88 573.1 23.9 413 81-494 47-459 (459)
2 KOG0330 ATP-dependent RNA heli 100.0 9.3E-72 2E-76 511.7 32.3 367 116-482 57-425 (476)
3 KOG0331 ATP-dependent RNA heli 100.0 9.5E-70 2.1E-74 531.3 35.2 370 121-490 92-474 (519)
4 PTZ00110 helicase; Provisional 100.0 1.2E-64 2.7E-69 521.9 46.2 376 115-490 125-510 (545)
5 KOG0328 Predicted ATP-dependen 100.0 2.6E-66 5.6E-71 456.4 28.3 372 119-490 26-399 (400)
6 COG0513 SrmB Superfamily II DN 100.0 1.4E-64 3.1E-69 516.5 40.6 362 120-481 29-398 (513)
7 KOG0333 U5 snRNP-like RNA heli 100.0 3.4E-64 7.3E-69 477.4 34.9 373 114-486 239-647 (673)
8 PRK11776 ATP-dependent RNA hel 100.0 1.9E-62 4.2E-67 500.9 42.9 363 120-482 4-367 (460)
9 PRK04837 ATP-dependent RNA hel 100.0 1.7E-62 3.8E-67 495.9 41.5 368 119-486 7-384 (423)
10 PRK11634 ATP-dependent RNA hel 100.0 1.7E-61 3.7E-66 502.5 43.6 366 120-485 6-373 (629)
11 PRK10590 ATP-dependent RNA hel 100.0 1.9E-61 4.2E-66 491.3 42.4 361 121-481 2-369 (456)
12 KOG0338 ATP-dependent RNA heli 100.0 7.4E-63 1.6E-67 466.5 26.0 357 119-475 180-544 (691)
13 PRK04537 ATP-dependent RNA hel 100.0 8.2E-61 1.8E-65 495.0 41.9 364 120-483 9-383 (572)
14 PLN00206 DEAD-box ATP-dependen 100.0 1.5E-60 3.2E-65 490.4 41.7 375 115-490 116-501 (518)
15 KOG0340 ATP-dependent RNA heli 100.0 2.6E-61 5.7E-66 437.8 29.9 367 119-485 6-382 (442)
16 KOG0342 ATP-dependent RNA heli 100.0 2.9E-61 6.4E-66 455.4 31.0 363 119-484 81-454 (543)
17 PRK11192 ATP-dependent RNA hel 100.0 3.7E-59 8.1E-64 473.9 43.3 362 121-482 2-370 (434)
18 PRK01297 ATP-dependent RNA hel 100.0 6.3E-59 1.4E-63 476.2 44.2 371 120-490 87-470 (475)
19 KOG0345 ATP-dependent RNA heli 100.0 8.5E-60 1.9E-64 442.4 33.6 363 121-484 5-384 (567)
20 KOG0336 ATP-dependent RNA heli 100.0 1.3E-60 2.8E-65 440.1 27.4 372 115-487 214-595 (629)
21 KOG0343 RNA Helicase [RNA proc 100.0 1.1E-59 2.4E-64 448.8 30.5 364 120-485 69-443 (758)
22 PTZ00424 helicase 45; Provisio 100.0 5.5E-58 1.2E-62 462.1 42.1 371 119-489 27-399 (401)
23 KOG0335 ATP-dependent RNA heli 100.0 3.5E-59 7.5E-64 449.1 28.1 369 121-489 75-469 (482)
24 KOG0339 ATP-dependent RNA heli 100.0 9.3E-57 2E-61 424.7 31.6 377 113-489 216-600 (731)
25 KOG0346 RNA helicase [RNA proc 100.0 1.1E-56 2.4E-61 417.8 28.2 360 120-479 19-425 (569)
26 KOG0347 RNA helicase [RNA proc 100.0 6.3E-58 1.4E-62 436.7 19.7 376 116-492 177-602 (731)
27 KOG0341 DEAD-box protein abstr 100.0 5.3E-58 1.2E-62 420.1 17.9 376 112-488 162-553 (610)
28 KOG0327 Translation initiation 100.0 6.9E-56 1.5E-60 408.5 26.1 368 121-490 27-396 (397)
29 KOG0332 ATP-dependent RNA heli 100.0 1E-55 2.2E-60 403.7 26.6 369 114-485 84-465 (477)
30 KOG0348 ATP-dependent RNA heli 100.0 3E-55 6.6E-60 417.2 28.9 358 117-474 133-564 (708)
31 KOG4284 DEAD box protein [Tran 100.0 7.5E-54 1.6E-58 415.2 25.0 374 112-486 17-409 (980)
32 TIGR03817 DECH_helic helicase/ 100.0 3.6E-52 7.8E-57 441.1 39.9 350 126-483 20-407 (742)
33 KOG0334 RNA helicase [RNA proc 100.0 6.8E-53 1.5E-57 432.6 28.4 370 116-485 361-741 (997)
34 KOG0337 ATP-dependent RNA heli 100.0 4.7E-53 1E-57 391.8 20.7 367 119-485 20-389 (529)
35 PLN03137 ATP-dependent DNA hel 100.0 4.1E-51 8.9E-56 429.9 37.1 338 125-474 442-797 (1195)
36 KOG0350 DEAD-box ATP-dependent 100.0 1.1E-50 2.4E-55 383.5 28.6 348 131-478 148-554 (620)
37 TIGR00614 recQ_fam ATP-depende 100.0 7.3E-50 1.6E-54 407.6 35.5 325 137-474 6-343 (470)
38 PRK11057 ATP-dependent DNA hel 100.0 8.9E-49 1.9E-53 409.7 37.2 322 138-473 21-352 (607)
39 TIGR01389 recQ ATP-dependent D 100.0 1.9E-47 4E-52 401.1 36.2 323 138-473 9-340 (591)
40 KOG0344 ATP-dependent RNA heli 100.0 2.4E-48 5.3E-53 376.3 25.0 376 116-491 128-522 (593)
41 KOG0329 ATP-dependent RNA heli 100.0 3.9E-48 8.5E-53 336.8 16.5 340 119-493 41-385 (387)
42 COG0514 RecQ Superfamily II DN 100.0 1.5E-46 3.2E-51 375.1 27.7 326 138-475 13-348 (590)
43 PRK02362 ski2-like helicase; P 100.0 9.4E-46 2E-50 396.5 35.9 333 121-465 2-398 (737)
44 PRK13767 ATP-dependent helicas 100.0 6.1E-45 1.3E-49 393.5 37.5 352 127-482 18-418 (876)
45 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.9E-44 6.4E-49 380.3 34.9 305 146-467 6-339 (819)
46 PRK00254 ski2-like helicase; P 100.0 4.4E-44 9.5E-49 382.7 36.3 335 121-465 2-389 (720)
47 PRK11664 ATP-dependent RNA hel 100.0 7.3E-44 1.6E-48 378.3 32.6 304 146-466 9-341 (812)
48 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.6E-43 5.6E-48 366.3 35.5 312 138-463 12-390 (844)
49 PRK01172 ski2-like helicase; P 100.0 3E-43 6.5E-48 374.8 34.3 348 121-482 2-394 (674)
50 TIGR00580 mfd transcription-re 100.0 1.1E-42 2.4E-47 372.0 38.5 322 126-464 435-770 (926)
51 PHA02653 RNA helicase NPH-II; 100.0 2.3E-43 5E-48 365.0 32.3 314 145-473 167-523 (675)
52 COG1201 Lhr Lhr-like helicases 100.0 1.2E-42 2.6E-47 359.4 34.8 351 126-481 7-381 (814)
53 PRK10689 transcription-repair 100.0 5.3E-42 1.2E-46 374.3 38.2 316 130-463 588-918 (1147)
54 KOG0922 DEAH-box RNA helicase 100.0 5.7E-43 1.2E-47 344.4 20.9 309 143-466 52-392 (674)
55 PRK10917 ATP-dependent DNA hel 100.0 1.2E-40 2.6E-45 352.1 39.0 317 129-462 248-587 (681)
56 TIGR00643 recG ATP-dependent D 100.0 3.7E-40 8.1E-45 346.2 38.1 316 131-462 225-564 (630)
57 PRK09751 putative ATP-dependen 100.0 8.3E-41 1.8E-45 366.5 34.1 321 162-485 1-408 (1490)
58 KOG0923 mRNA splicing factor A 100.0 1.6E-41 3.5E-46 330.7 20.5 310 140-463 263-605 (902)
59 KOG0353 ATP-dependent DNA heli 100.0 8.4E-41 1.8E-45 306.5 23.4 325 140-475 92-478 (695)
60 PRK11131 ATP-dependent RNA hel 100.0 2.5E-40 5.4E-45 356.6 26.0 305 145-467 77-414 (1294)
61 KOG0351 ATP-dependent DNA heli 100.0 3E-40 6.5E-45 348.4 25.9 331 133-473 255-601 (941)
62 COG1643 HrpA HrpA-like helicas 100.0 1.4E-40 3.1E-45 346.6 22.7 323 144-480 52-405 (845)
63 KOG0924 mRNA splicing factor A 100.0 1.7E-40 3.7E-45 324.0 17.9 308 140-464 354-697 (1042)
64 TIGR01967 DEAH_box_HrpA ATP-de 100.0 8.2E-39 1.8E-43 346.2 27.5 303 148-467 73-407 (1283)
65 PRK12898 secA preprotein trans 100.0 9.5E-38 2.1E-42 318.2 32.7 317 142-468 103-590 (656)
66 PRK14701 reverse gyrase; Provi 100.0 4.1E-38 8.9E-43 351.3 32.5 328 130-472 67-464 (1638)
67 COG1111 MPH1 ERCC4-like helica 100.0 7.2E-38 1.6E-42 299.2 29.1 320 140-464 13-481 (542)
68 KOG0352 ATP-dependent DNA heli 100.0 2.7E-39 5.8E-44 300.7 18.7 328 131-472 7-370 (641)
69 PRK09401 reverse gyrase; Revie 100.0 1.1E-37 2.4E-42 341.3 32.5 295 139-450 78-430 (1176)
70 TIGR01587 cas3_core CRISPR-ass 100.0 4.7E-38 1E-42 312.0 24.7 298 159-464 1-336 (358)
71 PHA02558 uvsW UvsW helicase; P 100.0 2.5E-37 5.4E-42 317.1 30.3 305 141-462 113-450 (501)
72 PRK09200 preprotein translocas 100.0 1.2E-36 2.5E-41 316.7 31.8 318 139-467 76-544 (790)
73 COG1205 Distinct helicase fami 100.0 1.2E-36 2.7E-41 323.6 32.2 348 127-477 55-437 (851)
74 TIGR03714 secA2 accessory Sec 100.0 3.3E-36 7.2E-41 310.3 31.5 317 143-467 69-540 (762)
75 KOG0349 Putative DEAD-box RNA 100.0 3.2E-37 7E-42 287.2 20.6 276 187-462 285-613 (725)
76 KOG0920 ATP-dependent RNA heli 100.0 7.8E-37 1.7E-41 317.1 25.1 335 142-487 173-570 (924)
77 COG1202 Superfamily II helicas 100.0 2.1E-36 4.5E-41 291.1 25.5 340 120-466 194-555 (830)
78 COG1204 Superfamily II helicas 100.0 2.3E-36 4.9E-41 317.2 27.0 331 127-464 16-408 (766)
79 TIGR00963 secA preprotein tran 100.0 1.9E-35 4.1E-40 302.8 30.7 315 142-468 56-521 (745)
80 PRK13766 Hef nuclease; Provisi 100.0 8.8E-35 1.9E-39 315.6 36.9 321 140-465 13-480 (773)
81 KOG0926 DEAH-box RNA helicase 100.0 1.3E-36 2.8E-41 301.6 20.0 324 148-485 262-728 (1172)
82 TIGR03158 cas3_cyano CRISPR-as 100.0 6.6E-35 1.4E-39 286.4 30.5 288 146-449 1-357 (357)
83 TIGR01054 rgy reverse gyrase. 100.0 2E-34 4.3E-39 316.1 32.7 290 131-436 67-409 (1171)
84 KOG0354 DEAD-box like helicase 100.0 4.2E-34 9.1E-39 289.0 26.2 318 141-464 61-529 (746)
85 TIGR00603 rad25 DNA repair hel 100.0 9.1E-34 2E-38 292.4 27.6 304 142-467 255-610 (732)
86 KOG0925 mRNA splicing factor A 100.0 1E-34 2.3E-39 274.2 18.3 326 119-464 24-387 (699)
87 KOG0952 DNA/RNA helicase MER3/ 100.0 2.1E-32 4.5E-37 279.8 26.9 329 139-472 107-499 (1230)
88 PRK04914 ATP-dependent helicas 100.0 1.5E-30 3.3E-35 277.6 31.8 332 142-478 152-617 (956)
89 PRK05580 primosome assembly pr 100.0 9E-30 2E-34 268.3 34.9 304 142-462 144-547 (679)
90 cd00268 DEADc DEAD-box helicas 100.0 1.7E-30 3.8E-35 236.8 23.9 200 122-321 1-202 (203)
91 COG1197 Mfd Transcription-repa 100.0 1.1E-29 2.4E-34 266.9 32.1 321 126-464 578-913 (1139)
92 COG1200 RecG RecG-like helicas 100.0 2.1E-29 4.5E-34 251.5 31.8 332 125-473 245-601 (677)
93 PRK13104 secA preprotein trans 100.0 7.4E-30 1.6E-34 265.2 29.4 315 142-467 82-590 (896)
94 COG1061 SSL2 DNA or RNA helica 100.0 5.7E-30 1.2E-34 257.6 27.8 290 142-450 36-375 (442)
95 PRK09694 helicase Cas3; Provis 100.0 5.9E-29 1.3E-33 263.9 33.7 308 141-453 285-664 (878)
96 KOG0948 Nuclear exosomal RNA h 100.0 5.8E-31 1.3E-35 260.2 15.8 307 142-464 129-539 (1041)
97 KOG0947 Cytoplasmic exosomal R 100.0 1.2E-29 2.7E-34 256.7 23.6 305 142-462 297-721 (1248)
98 COG4581 Superfamily II RNA hel 100.0 4.1E-29 8.9E-34 262.5 26.7 317 136-464 114-537 (1041)
99 PRK12899 secA preprotein trans 100.0 1.6E-28 3.5E-33 254.7 30.7 148 123-275 65-228 (970)
100 PRK12904 preprotein translocas 100.0 1.2E-28 2.6E-33 256.1 29.4 314 142-467 81-576 (830)
101 TIGR00595 priA primosomal prot 100.0 5.1E-28 1.1E-32 246.3 30.9 288 161-465 1-383 (505)
102 PRK12906 secA preprotein trans 100.0 1.3E-28 2.9E-33 254.8 26.7 315 142-467 80-556 (796)
103 KOG0951 RNA helicase BRR2, DEA 100.0 1.8E-28 3.8E-33 254.1 25.1 327 139-471 306-709 (1674)
104 COG4098 comFA Superfamily II D 100.0 3.3E-26 7.1E-31 208.6 30.8 304 142-468 97-420 (441)
105 PRK11448 hsdR type I restricti 100.0 8.5E-27 1.8E-31 254.5 29.9 316 142-464 413-815 (1123)
106 PRK13107 preprotein translocas 100.0 1.1E-26 2.3E-31 241.0 26.0 314 142-467 82-594 (908)
107 PLN03142 Probable chromatin-re 99.9 1.6E-25 3.5E-30 240.0 28.4 314 142-464 169-599 (1033)
108 PF00270 DEAD: DEAD/DEAH box h 99.9 3E-26 6.4E-31 202.5 17.3 165 144-309 1-168 (169)
109 KOG0950 DNA polymerase theta/e 99.9 1.8E-25 3.9E-30 228.3 22.1 328 131-472 212-619 (1008)
110 COG1203 CRISPR-associated heli 99.9 1.8E-23 4E-28 222.7 24.0 318 143-464 196-550 (733)
111 KOG0385 Chromatin remodeling c 99.9 9.9E-23 2.1E-27 203.1 24.3 324 142-476 167-613 (971)
112 PRK12900 secA preprotein trans 99.9 7.5E-23 1.6E-27 213.4 23.6 128 338-467 577-714 (1025)
113 TIGR01407 dinG_rel DnaQ family 99.9 2.7E-21 5.8E-26 210.5 32.3 329 128-464 232-814 (850)
114 PRK12326 preprotein translocas 99.9 2.1E-21 4.5E-26 197.3 28.1 314 142-467 78-550 (764)
115 COG1110 Reverse gyrase [DNA re 99.9 5.3E-21 1.1E-25 196.8 28.7 280 139-436 80-417 (1187)
116 TIGR00631 uvrb excinuclease AB 99.9 5.1E-20 1.1E-24 192.2 30.7 130 344-474 427-563 (655)
117 TIGR00348 hsdR type I site-spe 99.9 2.8E-20 6E-25 196.5 29.1 296 142-451 238-634 (667)
118 PRK13103 secA preprotein trans 99.9 1.1E-20 2.4E-25 196.6 25.2 314 142-467 82-594 (913)
119 KOG0384 Chromodomain-helicase 99.9 3.6E-22 7.9E-27 208.1 13.6 315 141-465 369-812 (1373)
120 COG4096 HsdR Type I site-speci 99.9 4.8E-21 1E-25 194.3 20.9 308 142-467 165-548 (875)
121 COG1198 PriA Primosomal protei 99.9 4E-20 8.7E-25 191.2 26.8 307 141-462 197-601 (730)
122 smart00487 DEXDc DEAD-like hel 99.9 6.5E-20 1.4E-24 166.1 20.9 185 138-323 4-190 (201)
123 KOG0387 Transcription-coupled 99.9 2.8E-19 6.1E-24 179.5 25.8 315 142-465 205-659 (923)
124 PRK07246 bifunctional ATP-depe 99.8 4E-18 8.6E-23 183.2 33.7 329 138-478 242-799 (820)
125 PRK12903 secA preprotein trans 99.8 5.7E-19 1.2E-23 182.1 25.9 313 142-467 78-542 (925)
126 KOG4150 Predicted ATP-dependen 99.8 7.3E-20 1.6E-24 176.9 18.2 344 138-485 282-663 (1034)
127 PRK05298 excinuclease ABC subu 99.8 1.3E-18 2.8E-23 183.2 28.2 134 356-490 445-592 (652)
128 KOG1123 RNA polymerase II tran 99.8 1.1E-19 2.5E-24 173.3 17.9 307 142-469 302-658 (776)
129 KOG0953 Mitochondrial RNA heli 99.8 1.4E-19 3.1E-24 175.0 16.7 281 159-483 193-492 (700)
130 KOG0949 Predicted helicase, DE 99.8 4.8E-19 1E-23 180.8 19.5 157 142-303 511-671 (1330)
131 CHL00122 secA preprotein trans 99.8 3.5E-18 7.6E-23 177.4 26.2 271 142-424 76-491 (870)
132 KOG0921 Dosage compensation co 99.8 3.4E-19 7.4E-24 180.2 13.0 327 145-482 381-794 (1282)
133 KOG0389 SNF2 family DNA-depend 99.8 3.1E-18 6.6E-23 171.9 19.3 316 143-465 400-889 (941)
134 COG0556 UvrB Helicase subunit 99.8 2.5E-17 5.3E-22 159.2 24.5 107 356-463 445-556 (663)
135 KOG1000 Chromatin remodeling p 99.8 2.7E-18 5.8E-23 163.9 17.5 323 140-476 196-617 (689)
136 KOG0390 DNA repair protein, SN 99.8 5.3E-17 1.1E-21 167.3 26.4 315 142-463 238-706 (776)
137 KOG0392 SNF2 family DNA-depend 99.8 1.7E-17 3.6E-22 173.2 22.7 316 142-465 975-1455(1549)
138 PRK12902 secA preprotein trans 99.8 8.9E-17 1.9E-21 166.7 27.3 127 142-275 85-218 (939)
139 cd00079 HELICc Helicase superf 99.8 5.1E-18 1.1E-22 142.9 14.5 118 343-460 12-131 (131)
140 TIGR03117 cas_csf4 CRISPR-asso 99.8 4E-16 8.7E-21 160.6 31.0 107 356-464 469-616 (636)
141 PRK08074 bifunctional ATP-depe 99.8 5.9E-16 1.3E-20 169.5 32.2 109 356-464 751-893 (928)
142 COG4889 Predicted helicase [Ge 99.8 3.2E-18 6.8E-23 172.9 10.7 353 121-480 141-617 (1518)
143 cd00046 DEXDc DEAD-like helica 99.7 7.5E-17 1.6E-21 137.4 16.4 144 158-303 1-144 (144)
144 PF00271 Helicase_C: Helicase 99.7 2.1E-17 4.6E-22 125.5 9.1 78 375-452 1-78 (78)
145 KOG0951 RNA helicase BRR2, DEA 99.7 1.5E-15 3.3E-20 159.0 21.8 311 142-472 1143-1502(1674)
146 PRK12901 secA preprotein trans 99.7 1.7E-15 3.7E-20 158.8 21.0 126 340-467 609-744 (1112)
147 TIGR02562 cas3_yersinia CRISPR 99.7 6.6E-15 1.4E-19 155.2 23.0 317 132-453 398-881 (1110)
148 PF04851 ResIII: Type III rest 99.7 2.6E-15 5.7E-20 134.2 15.4 152 142-304 3-183 (184)
149 PRK11747 dinG ATP-dependent DN 99.7 2.8E-13 6.1E-18 144.0 32.6 106 356-464 533-674 (697)
150 COG1199 DinG Rad3-related DNA 99.6 3.7E-13 8E-18 144.1 30.3 130 348-481 471-636 (654)
151 TIGR00604 rad3 DNA repair heli 99.6 8.7E-13 1.9E-17 141.4 29.4 73 140-212 8-84 (705)
152 smart00490 HELICc helicase sup 99.6 8.2E-15 1.8E-19 112.3 9.1 81 372-452 2-82 (82)
153 PRK14873 primosome assembly pr 99.6 1.7E-12 3.8E-17 135.7 27.5 130 163-305 166-305 (665)
154 KOG0386 Chromatin remodeling c 99.6 7.2E-14 1.6E-18 144.2 15.7 309 142-464 394-838 (1157)
155 KOG0388 SNF2 family DNA-depend 99.5 2.2E-13 4.8E-18 135.5 16.9 123 342-464 1027-1154(1185)
156 PF02399 Herpes_ori_bp: Origin 99.5 5.9E-13 1.3E-17 137.3 19.3 286 160-464 52-388 (824)
157 PF06862 DUF1253: Protein of u 99.5 8.3E-12 1.8E-16 122.7 25.9 235 238-472 131-423 (442)
158 KOG0391 SNF2 family DNA-depend 99.5 2.1E-12 4.6E-17 134.6 21.4 123 342-464 1259-1387(1958)
159 KOG1002 Nucleotide excision re 99.5 8.7E-13 1.9E-17 126.5 16.8 110 356-465 637-750 (791)
160 PF07652 Flavi_DEAD: Flaviviru 99.4 9.8E-13 2.1E-17 108.0 8.5 137 157-309 4-142 (148)
161 COG0653 SecA Preprotein transl 99.4 1.7E-11 3.7E-16 127.5 18.4 314 142-465 80-546 (822)
162 COG0553 HepA Superfamily II DN 99.4 1.6E-11 3.5E-16 136.6 19.8 123 343-465 692-823 (866)
163 KOG4439 RNA polymerase II tran 99.4 1.4E-11 3E-16 123.1 16.5 109 356-464 745-858 (901)
164 COG0610 Type I site-specific r 99.3 9.8E-10 2.1E-14 120.3 25.2 294 158-462 274-651 (962)
165 PF00176 SNF2_N: SNF2 family N 99.3 2.3E-11 4.9E-16 117.7 10.6 152 146-304 1-173 (299)
166 KOG2340 Uncharacterized conser 99.2 1.9E-10 4.1E-15 111.7 15.4 332 140-472 214-676 (698)
167 KOG1015 Transcription regulato 99.2 7E-10 1.5E-14 114.2 17.9 120 344-463 1127-1276(1567)
168 smart00488 DEXDc2 DEAD-like he 99.1 1.4E-09 3E-14 103.7 12.8 70 142-211 8-84 (289)
169 smart00489 DEXDc3 DEAD-like he 99.1 1.4E-09 3E-14 103.7 12.8 70 142-211 8-84 (289)
170 PF07517 SecA_DEAD: SecA DEAD- 98.9 5.3E-08 1.1E-12 90.4 14.0 127 142-275 77-210 (266)
171 KOG1016 Predicted DNA helicase 98.8 7E-07 1.5E-11 90.8 19.3 102 358-459 720-842 (1387)
172 KOG0952 DNA/RNA helicase MER3/ 98.7 2.3E-09 5.1E-14 112.1 -0.1 223 142-372 927-1168(1230)
173 PRK15483 type III restriction- 98.6 4.6E-07 1E-11 97.1 14.7 142 159-305 61-240 (986)
174 PF13604 AAA_30: AAA domain; P 98.6 2.9E-07 6.2E-12 82.8 10.8 123 142-302 1-130 (196)
175 TIGR00596 rad1 DNA repair prot 98.6 4.1E-07 8.9E-12 97.3 13.1 68 236-303 5-72 (814)
176 PF13086 AAA_11: AAA domain; P 98.6 3.6E-07 7.7E-12 84.9 10.2 67 143-210 2-75 (236)
177 KOG1133 Helicase of the DEAD s 98.6 5.1E-05 1.1E-09 77.2 25.6 105 356-463 628-779 (821)
178 COG3587 Restriction endonuclea 98.4 1.2E-05 2.5E-10 83.6 17.8 73 406-478 482-567 (985)
179 PF02562 PhoH: PhoH-like prote 98.4 2.3E-07 5E-12 82.7 4.6 147 140-302 2-155 (205)
180 PF13872 AAA_34: P-loop contai 98.4 3.8E-06 8.2E-11 78.4 11.9 161 142-310 37-227 (303)
181 PF13307 Helicase_C_2: Helicas 98.4 1.1E-06 2.4E-11 76.8 7.6 111 350-463 3-149 (167)
182 PRK10536 hypothetical protein; 98.3 1.5E-05 3.2E-10 73.2 12.9 143 139-299 56-209 (262)
183 TIGR01447 recD exodeoxyribonuc 98.3 9.6E-06 2.1E-10 84.6 13.1 139 145-302 148-295 (586)
184 PRK10875 recD exonuclease V su 98.3 1.7E-05 3.6E-10 83.1 14.6 140 144-302 154-301 (615)
185 TIGR01448 recD_rel helicase, p 98.2 2E-05 4.4E-10 84.6 14.5 126 141-302 322-452 (720)
186 KOG1001 Helicase-like transcri 98.2 6.7E-06 1.4E-10 86.3 10.1 100 358-457 540-641 (674)
187 PF12340 DUF3638: Protein of u 98.2 3.1E-05 6.7E-10 69.7 12.8 145 127-276 10-186 (229)
188 PF09848 DUF2075: Uncharacteri 98.2 8.3E-06 1.8E-10 80.6 9.7 108 159-289 3-117 (352)
189 KOG1803 DNA helicase [Replicat 98.1 7.8E-06 1.7E-10 81.9 8.1 63 142-207 185-248 (649)
190 PF13245 AAA_19: Part of AAA d 98.1 1.3E-05 2.9E-10 59.6 7.2 59 150-208 2-62 (76)
191 KOG1802 RNA helicase nonsense 98.0 3.2E-05 7E-10 78.0 9.8 76 135-212 403-478 (935)
192 PRK12723 flagellar biosynthesi 98.0 7.5E-05 1.6E-09 73.7 12.0 119 158-304 175-298 (388)
193 PF00448 SRP54: SRP54-type pro 97.9 8.8E-05 1.9E-09 66.5 10.2 129 160-313 4-135 (196)
194 TIGR00376 DNA helicase, putati 97.9 0.0001 2.2E-09 78.1 12.2 67 141-210 156-223 (637)
195 PRK13889 conjugal transfer rel 97.9 0.0002 4.4E-09 78.5 14.5 123 142-302 346-470 (988)
196 TIGR02768 TraA_Ti Ti-type conj 97.8 0.00031 6.8E-09 75.9 14.9 121 142-300 352-474 (744)
197 COG1875 NYN ribonuclease and A 97.8 0.00027 5.8E-09 67.2 11.6 144 138-300 224-385 (436)
198 PRK13826 Dtr system oriT relax 97.7 0.00066 1.4E-08 75.1 14.5 137 127-302 367-505 (1102)
199 PRK14974 cell division protein 97.7 0.0007 1.5E-08 65.7 12.9 131 159-315 142-276 (336)
200 KOG1132 Helicase of the DEAD s 97.6 0.00028 6.1E-09 73.9 10.2 40 142-181 21-64 (945)
201 PF13401 AAA_22: AAA domain; P 97.6 0.00016 3.4E-09 60.3 6.7 22 157-178 4-25 (131)
202 PRK14722 flhF flagellar biosyn 97.6 0.00053 1.1E-08 67.2 11.1 129 157-314 137-269 (374)
203 KOG0383 Predicted helicase [Ge 97.6 5.7E-06 1.2E-10 85.8 -3.1 76 344-420 616-696 (696)
204 PRK04296 thymidine kinase; Pro 97.6 0.00025 5.5E-09 63.4 7.7 35 159-196 4-38 (190)
205 COG1419 FlhF Flagellar GTP-bin 97.5 0.00096 2.1E-08 65.0 11.2 130 157-314 203-335 (407)
206 cd00009 AAA The AAA+ (ATPases 97.5 0.00092 2E-08 56.5 10.1 17 157-173 19-35 (151)
207 KOG1805 DNA replication helica 97.5 0.00071 1.5E-08 71.7 10.3 126 140-276 667-810 (1100)
208 smart00492 HELICc3 helicase su 97.5 0.0012 2.6E-08 55.7 9.9 77 387-463 27-137 (141)
209 smart00382 AAA ATPases associa 97.4 0.00042 9.1E-09 58.1 7.1 41 157-200 2-42 (148)
210 PF00580 UvrD-helicase: UvrD/R 97.4 0.00037 8E-09 67.7 7.5 122 143-272 1-125 (315)
211 KOG1513 Nuclear helicase MOP-3 97.4 0.00066 1.4E-08 70.2 9.3 156 142-302 264-453 (1300)
212 PRK11889 flhF flagellar biosyn 97.4 0.0019 4.1E-08 63.1 12.0 130 158-315 242-375 (436)
213 smart00491 HELICc2 helicase su 97.4 0.0011 2.5E-08 55.9 8.8 94 370-463 4-138 (142)
214 COG3421 Uncharacterized protei 97.4 0.0015 3.1E-08 65.9 10.6 151 162-316 2-177 (812)
215 TIGR02760 TraI_TIGR conjugativ 97.3 0.016 3.5E-07 69.1 20.3 236 142-407 429-686 (1960)
216 PF05970 PIF1: PIF1-like helic 97.3 0.00084 1.8E-08 66.6 8.5 59 143-204 2-66 (364)
217 PRK12377 putative replication 97.3 0.0037 8.1E-08 58.0 11.7 43 158-204 102-144 (248)
218 PRK05703 flhF flagellar biosyn 97.2 0.004 8.7E-08 62.7 12.4 128 157-314 221-354 (424)
219 PRK12727 flagellar biosynthesi 97.2 0.012 2.6E-07 59.9 14.9 119 156-304 349-470 (559)
220 KOG1131 RNA polymerase II tran 97.1 0.0022 4.7E-08 63.5 8.9 71 140-210 14-89 (755)
221 KOG0989 Replication factor C, 97.1 0.0012 2.5E-08 61.5 6.6 46 258-304 125-170 (346)
222 PRK06526 transposase; Provisio 97.1 0.0062 1.3E-07 56.9 11.7 27 153-179 94-120 (254)
223 PRK07764 DNA polymerase III su 97.1 0.0065 1.4E-07 66.1 13.0 40 260-300 118-157 (824)
224 PRK07003 DNA polymerase III su 97.0 0.0057 1.2E-07 64.6 11.6 40 261-302 118-157 (830)
225 PRK08181 transposase; Validate 97.0 0.011 2.4E-07 55.6 12.5 22 154-175 103-124 (269)
226 PRK00771 signal recognition pa 97.0 0.0068 1.5E-07 61.0 11.4 129 159-314 97-228 (437)
227 PRK14956 DNA polymerase III su 97.0 0.0028 6E-08 64.0 8.5 19 160-178 43-61 (484)
228 TIGR01425 SRP54_euk signal rec 97.0 0.014 3.1E-07 58.3 13.3 131 159-314 102-235 (429)
229 PF14617 CMS1: U3-containing 9 97.0 0.002 4.4E-08 59.4 6.6 87 186-273 124-212 (252)
230 PRK12323 DNA polymerase III su 96.9 0.0066 1.4E-07 63.2 10.8 40 260-300 122-161 (700)
231 PRK12726 flagellar biosynthesi 96.9 0.0074 1.6E-07 58.9 10.0 120 157-304 206-328 (407)
232 PF05127 Helicase_RecD: Helica 96.9 0.0014 3E-08 57.1 4.5 123 161-303 1-123 (177)
233 PRK05642 DNA replication initi 96.9 0.0036 7.7E-08 58.0 7.5 45 260-304 95-140 (234)
234 PRK10867 signal recognition pa 96.8 0.019 4.1E-07 57.8 13.0 57 159-220 102-160 (433)
235 PRK08116 hypothetical protein; 96.8 0.033 7.2E-07 52.6 14.0 39 159-201 116-154 (268)
236 PRK14960 DNA polymerase III su 96.8 0.0096 2.1E-07 62.2 11.0 40 261-302 117-156 (702)
237 TIGR00064 ftsY signal recognit 96.8 0.028 6.1E-07 53.2 13.1 132 158-315 73-214 (272)
238 PF13177 DNA_pol3_delta2: DNA 96.8 0.017 3.6E-07 50.1 10.7 117 160-303 22-142 (162)
239 PRK07952 DNA replication prote 96.8 0.022 4.9E-07 52.7 12.0 44 260-304 160-205 (244)
240 PF13871 Helicase_C_4: Helicas 96.8 0.0037 8.1E-08 58.4 6.8 79 398-476 52-142 (278)
241 PRK11331 5-methylcytosine-spec 96.8 0.0088 1.9E-07 59.8 9.7 33 143-175 180-212 (459)
242 PRK14723 flhF flagellar biosyn 96.8 0.0091 2E-07 63.7 10.4 130 157-314 185-317 (767)
243 PRK07994 DNA polymerase III su 96.7 0.013 2.8E-07 61.8 11.4 38 261-299 118-155 (647)
244 PRK14964 DNA polymerase III su 96.7 0.02 4.4E-07 58.4 12.5 115 159-299 37-152 (491)
245 PRK06893 DNA replication initi 96.7 0.0045 9.8E-08 57.1 7.0 46 260-305 89-136 (229)
246 PRK12724 flagellar biosynthesi 96.7 0.02 4.4E-07 56.8 11.8 125 159-314 225-356 (432)
247 PRK14958 DNA polymerase III su 96.7 0.023 5E-07 58.7 12.8 39 261-300 118-156 (509)
248 PRK05707 DNA polymerase III su 96.7 0.019 4E-07 55.9 11.5 36 143-178 4-43 (328)
249 PRK14712 conjugal transfer nic 96.7 0.018 3.8E-07 66.3 12.7 62 142-204 835-900 (1623)
250 PRK14949 DNA polymerase III su 96.7 0.0077 1.7E-07 64.9 9.3 38 261-299 118-155 (944)
251 PRK13709 conjugal transfer nic 96.7 0.022 4.7E-07 66.5 13.5 61 142-203 967-1031(1747)
252 cd01120 RecA-like_NTPases RecA 96.7 0.015 3.3E-07 50.1 9.8 35 160-197 2-36 (165)
253 PRK14087 dnaA chromosomal repl 96.7 0.011 2.4E-07 60.2 9.9 44 158-203 142-185 (450)
254 PRK06731 flhF flagellar biosyn 96.6 0.023 5E-07 53.4 11.3 130 157-315 75-209 (270)
255 PRK06995 flhF flagellar biosyn 96.6 0.015 3.2E-07 59.2 10.6 25 157-181 256-280 (484)
256 cd01124 KaiC KaiC is a circadi 96.6 0.017 3.7E-07 51.3 10.0 48 160-211 2-49 (187)
257 TIGR03420 DnaA_homol_Hda DnaA 96.6 0.013 2.8E-07 54.0 9.4 43 262-304 90-133 (226)
258 PF00308 Bac_DnaA: Bacterial d 96.6 0.012 2.5E-07 53.9 8.9 108 159-308 36-145 (219)
259 PRK14951 DNA polymerase III su 96.6 0.015 3.3E-07 61.0 10.8 40 260-300 122-161 (618)
260 PTZ00293 thymidine kinase; Pro 96.6 0.014 2.9E-07 52.4 8.9 38 157-197 4-41 (211)
261 PRK14721 flhF flagellar biosyn 96.6 0.034 7.5E-07 55.6 12.6 123 156-306 190-314 (420)
262 PRK08084 DNA replication initi 96.6 0.0076 1.6E-07 55.9 7.6 43 262-304 97-141 (235)
263 TIGR00959 ffh signal recogniti 96.6 0.04 8.7E-07 55.4 13.1 57 159-220 101-159 (428)
264 KOG0298 DEAD box-containing he 96.5 0.0081 1.7E-07 65.7 8.4 150 156-310 373-557 (1394)
265 PRK09111 DNA polymerase III su 96.5 0.032 6.9E-07 58.7 12.6 40 260-300 130-169 (598)
266 PRK08691 DNA polymerase III su 96.5 0.027 5.9E-07 59.4 12.0 40 260-300 117-156 (709)
267 TIGR01547 phage_term_2 phage t 96.5 0.017 3.6E-07 58.2 10.3 144 160-315 4-152 (396)
268 KOG0991 Replication factor C, 96.5 0.0052 1.1E-07 54.9 5.5 41 261-302 112-152 (333)
269 PRK00149 dnaA chromosomal repl 96.5 0.014 3E-07 59.8 9.5 38 158-196 149-186 (450)
270 PRK08727 hypothetical protein; 96.5 0.01 2.2E-07 54.9 7.7 34 159-195 43-76 (233)
271 PRK14952 DNA polymerase III su 96.4 0.036 7.7E-07 58.0 12.2 40 260-300 116-155 (584)
272 PRK14961 DNA polymerase III su 96.4 0.018 3.9E-07 57.2 9.6 39 260-299 117-155 (363)
273 PHA02533 17 large terminase pr 96.4 0.031 6.7E-07 58.0 11.6 147 142-302 59-209 (534)
274 PRK12402 replication factor C 96.4 0.029 6.2E-07 55.1 11.1 41 260-302 123-163 (337)
275 PRK06645 DNA polymerase III su 96.4 0.038 8.3E-07 56.8 12.1 20 159-178 45-64 (507)
276 PRK06835 DNA replication prote 96.4 0.055 1.2E-06 52.6 12.5 41 157-201 183-223 (329)
277 TIGR00678 holB DNA polymerase 96.4 0.033 7.2E-07 49.6 10.3 19 159-177 16-34 (188)
278 PF03354 Terminase_1: Phage Te 96.4 0.012 2.6E-07 60.7 8.3 150 145-302 1-163 (477)
279 PRK00411 cdc6 cell division co 96.4 0.019 4.2E-07 57.7 9.7 36 158-194 56-91 (394)
280 PRK07471 DNA polymerase III su 96.3 0.033 7.1E-07 55.1 10.8 42 260-302 139-180 (365)
281 PRK14965 DNA polymerase III su 96.3 0.048 1E-06 57.5 12.7 114 160-300 41-156 (576)
282 PRK14955 DNA polymerase III su 96.3 0.024 5.3E-07 56.9 10.1 19 160-178 41-59 (397)
283 COG1444 Predicted P-loop ATPas 96.3 0.061 1.3E-06 57.1 13.1 147 135-303 207-356 (758)
284 PF00004 AAA: ATPase family as 96.3 0.0068 1.5E-07 50.3 5.0 14 160-173 1-14 (132)
285 PF13173 AAA_14: AAA domain 96.3 0.043 9.3E-07 45.5 9.7 37 262-302 61-97 (128)
286 COG2909 MalT ATP-dependent tra 96.2 0.013 2.7E-07 62.1 7.6 43 262-304 129-171 (894)
287 TIGR02881 spore_V_K stage V sp 96.2 0.014 3.1E-07 55.1 7.4 18 158-175 43-60 (261)
288 TIGR00362 DnaA chromosomal rep 96.2 0.02 4.2E-07 57.9 8.8 36 159-195 138-173 (405)
289 PRK14959 DNA polymerase III su 96.2 0.053 1.2E-06 56.8 12.0 20 159-178 40-59 (624)
290 PRK10416 signal recognition pa 96.2 0.11 2.4E-06 50.4 13.5 55 260-314 194-255 (318)
291 PRK14957 DNA polymerase III su 96.2 0.044 9.5E-07 56.9 11.2 40 260-300 117-156 (546)
292 COG2805 PilT Tfp pilus assembl 96.2 0.011 2.4E-07 55.1 6.0 53 115-187 101-154 (353)
293 PRK08903 DnaA regulatory inact 96.2 0.026 5.7E-07 52.0 8.8 43 261-304 89-132 (227)
294 PLN03025 replication factor C 96.2 0.064 1.4E-06 52.3 11.9 40 261-302 98-137 (319)
295 cd03115 SRP The signal recogni 96.2 0.15 3.2E-06 44.7 13.2 54 261-314 81-135 (173)
296 PRK14969 DNA polymerase III su 96.1 0.07 1.5E-06 55.5 12.5 40 260-300 117-156 (527)
297 KOG0738 AAA+-type ATPase [Post 96.1 0.016 3.4E-07 55.9 7.0 64 261-324 303-382 (491)
298 PRK14954 DNA polymerase III su 96.1 0.072 1.6E-06 56.2 12.5 123 160-300 41-164 (620)
299 PRK13833 conjugal transfer pro 96.1 0.022 4.7E-07 55.0 7.9 65 134-201 122-187 (323)
300 PRK06921 hypothetical protein; 96.1 0.02 4.4E-07 54.0 7.6 37 157-195 117-153 (266)
301 PHA02544 44 clamp loader, smal 96.1 0.059 1.3E-06 52.4 11.2 40 261-300 99-138 (316)
302 cd01122 GP4d_helicase GP4d_hel 96.1 0.024 5.3E-07 53.8 8.3 39 155-195 28-66 (271)
303 PRK10919 ATP-dependent DNA hel 96.1 0.013 2.8E-07 63.0 7.0 69 142-212 2-71 (672)
304 PRK05563 DNA polymerase III su 96.1 0.075 1.6E-06 55.7 12.4 19 160-178 41-59 (559)
305 PRK14963 DNA polymerase III su 96.1 0.037 8.1E-07 57.1 10.0 17 160-176 39-55 (504)
306 PRK05896 DNA polymerase III su 96.0 0.093 2E-06 54.7 12.7 20 159-178 40-59 (605)
307 PRK11054 helD DNA helicase IV; 96.0 0.029 6.2E-07 60.2 9.1 70 141-212 195-265 (684)
308 PRK14962 DNA polymerase III su 96.0 0.036 7.9E-07 56.7 9.3 17 160-176 39-55 (472)
309 PTZ00112 origin recognition co 96.0 0.082 1.8E-06 56.9 11.9 22 160-182 784-805 (1164)
310 PRK08451 DNA polymerase III su 95.9 0.049 1.1E-06 56.2 10.1 40 260-300 115-154 (535)
311 TIGR02785 addA_Gpos recombinat 95.9 0.032 6.8E-07 64.3 9.6 123 143-273 2-126 (1232)
312 PRK04195 replication factor C 95.9 0.084 1.8E-06 54.6 11.8 17 158-174 40-56 (482)
313 PF05621 TniB: Bacterial TniB 95.9 0.031 6.7E-07 52.8 7.7 23 158-180 62-84 (302)
314 TIGR03499 FlhF flagellar biosy 95.9 0.028 6E-07 53.6 7.7 44 157-201 194-239 (282)
315 KOG0701 dsRNA-specific nucleas 95.9 0.0069 1.5E-07 68.8 4.0 94 359-452 294-399 (1606)
316 PHA03368 DNA packaging termina 95.9 0.055 1.2E-06 56.3 10.0 131 157-302 254-389 (738)
317 KOG2028 ATPase related to the 95.9 0.053 1.2E-06 51.9 9.1 16 159-174 164-179 (554)
318 PRK08533 flagellar accessory p 95.9 0.093 2E-06 48.4 10.8 52 156-211 23-74 (230)
319 PRK14950 DNA polymerase III su 95.9 0.12 2.7E-06 54.6 13.1 18 160-177 41-58 (585)
320 PF05496 RuvB_N: Holliday junc 95.9 0.02 4.3E-07 51.6 6.0 16 159-174 52-67 (233)
321 PHA03333 putative ATPase subun 95.9 0.1 2.2E-06 54.7 11.8 146 144-303 171-332 (752)
322 COG1435 Tdk Thymidine kinase [ 95.8 0.074 1.6E-06 46.6 9.3 102 160-289 7-108 (201)
323 TIGR02760 TraI_TIGR conjugativ 95.8 0.066 1.4E-06 64.1 11.8 61 142-204 1019-1084(1960)
324 COG0470 HolB ATPase involved i 95.8 0.028 6.1E-07 54.8 7.5 40 260-300 107-146 (325)
325 PRK09112 DNA polymerase III su 95.8 0.062 1.3E-06 52.8 9.7 40 260-300 139-178 (351)
326 PRK00440 rfc replication facto 95.8 0.13 2.9E-06 49.9 12.2 39 261-300 101-139 (319)
327 TIGR02782 TrbB_P P-type conjug 95.8 0.043 9.4E-07 52.7 8.4 66 133-201 109-175 (299)
328 PF06745 KaiC: KaiC; InterPro 95.7 0.024 5.1E-07 52.3 6.4 132 157-303 19-160 (226)
329 COG3973 Superfamily I DNA and 95.7 0.03 6.5E-07 57.0 7.2 69 146-214 213-286 (747)
330 PRK13894 conjugal transfer ATP 95.7 0.035 7.7E-07 53.7 7.6 66 132-200 124-190 (319)
331 PRK14088 dnaA chromosomal repl 95.7 0.087 1.9E-06 53.6 10.7 37 159-196 132-168 (440)
332 PRK08769 DNA polymerase III su 95.7 0.087 1.9E-06 50.9 10.1 37 141-177 3-46 (319)
333 CHL00181 cbbX CbbX; Provisiona 95.7 0.046 1E-06 52.2 8.2 20 157-176 59-78 (287)
334 PRK14086 dnaA chromosomal repl 95.6 0.059 1.3E-06 56.2 9.3 36 159-195 316-351 (617)
335 COG1484 DnaC DNA replication p 95.6 0.069 1.5E-06 50.0 9.0 47 156-206 104-150 (254)
336 PF05729 NACHT: NACHT domain 95.6 0.094 2E-06 45.3 9.4 18 159-176 2-19 (166)
337 PRK09183 transposase/IS protei 95.6 0.13 2.8E-06 48.4 10.7 24 154-177 99-122 (259)
338 TIGR01074 rep ATP-dependent DN 95.6 0.031 6.8E-07 60.4 7.5 68 143-212 2-70 (664)
339 COG0552 FtsY Signal recognitio 95.6 0.41 8.9E-06 45.7 13.7 130 160-315 142-281 (340)
340 TIGR03015 pepcterm_ATPase puta 95.5 0.18 3.9E-06 47.7 11.8 33 143-175 24-61 (269)
341 TIGR02928 orc1/cdc6 family rep 95.5 0.083 1.8E-06 52.5 9.8 24 158-182 41-64 (365)
342 COG2804 PulE Type II secretory 95.5 0.029 6.3E-07 56.3 6.3 43 143-186 242-286 (500)
343 KOG0742 AAA+-type ATPase [Post 95.5 0.066 1.4E-06 52.0 8.2 100 158-303 385-493 (630)
344 COG4962 CpaF Flp pilus assembl 95.5 0.029 6.4E-07 53.5 5.8 58 140-201 155-213 (355)
345 TIGR01075 uvrD DNA helicase II 95.4 0.035 7.7E-07 60.4 7.3 70 141-212 3-73 (715)
346 cd00984 DnaB_C DnaB helicase C 95.4 0.033 7.1E-07 51.9 6.1 45 156-202 12-59 (242)
347 TIGR02880 cbbX_cfxQ probable R 95.4 0.055 1.2E-06 51.6 7.7 19 157-175 58-76 (284)
348 COG2256 MGS1 ATPase related to 95.4 0.046 1E-06 53.1 6.9 36 263-303 105-140 (436)
349 PRK13342 recombination factor 95.3 0.24 5.2E-06 50.1 12.4 37 262-303 92-128 (413)
350 PRK14948 DNA polymerase III su 95.3 0.11 2.3E-06 55.2 10.1 19 159-177 40-58 (620)
351 PRK08699 DNA polymerase III su 95.3 0.2 4.4E-06 48.7 11.4 143 144-300 3-150 (325)
352 TIGR02524 dot_icm_DotB Dot/Icm 95.3 0.036 7.7E-07 54.6 6.2 27 157-184 134-160 (358)
353 PRK12422 chromosomal replicati 95.3 0.14 3.1E-06 52.0 10.7 35 158-195 142-176 (445)
354 KOG0058 Peptide exporter, ABC 95.3 0.045 9.7E-07 57.2 7.0 137 156-297 493-657 (716)
355 PRK11823 DNA repair protein Ra 95.3 0.092 2E-06 53.5 9.3 52 157-212 80-131 (446)
356 TIGR02525 plasmid_TraJ plasmid 95.3 0.046 1E-06 54.0 6.8 37 159-196 151-187 (372)
357 PRK11773 uvrD DNA-dependent he 95.2 0.049 1.1E-06 59.3 7.5 70 141-212 8-78 (721)
358 COG1474 CDC6 Cdc6-related prot 95.2 0.22 4.8E-06 49.2 11.3 26 159-185 44-69 (366)
359 PF05876 Terminase_GpA: Phage 95.2 0.046 9.9E-07 57.3 6.9 70 142-213 16-88 (557)
360 PRK06647 DNA polymerase III su 95.2 0.093 2E-06 54.9 9.1 17 160-176 41-57 (563)
361 PRK04841 transcriptional regul 95.2 0.13 2.9E-06 57.8 11.1 44 261-304 120-163 (903)
362 COG1618 Predicted nucleotide k 95.2 0.015 3.2E-07 49.2 2.5 115 159-288 7-128 (179)
363 PRK10917 ATP-dependent DNA hel 95.1 0.14 3.1E-06 55.3 10.5 76 356-431 309-389 (681)
364 PRK05580 primosome assembly pr 95.0 0.19 4E-06 54.3 11.2 76 357-433 190-266 (679)
365 TIGR03881 KaiC_arch_4 KaiC dom 95.0 0.18 3.9E-06 46.5 9.8 51 157-211 20-70 (229)
366 PRK06964 DNA polymerase III su 95.0 0.25 5.4E-06 48.3 10.9 35 144-178 3-42 (342)
367 TIGR01073 pcrA ATP-dependent D 95.0 0.1 2.3E-06 56.9 9.3 70 141-212 3-73 (726)
368 PF01443 Viral_helicase1: Vira 95.0 0.027 5.9E-07 52.0 4.2 14 160-173 1-14 (234)
369 TIGR00595 priA primosomal prot 95.0 0.18 3.9E-06 52.3 10.5 75 357-432 25-100 (505)
370 PRK06305 DNA polymerase III su 95.0 0.38 8.1E-06 49.2 12.6 20 159-178 41-60 (451)
371 PRK06620 hypothetical protein; 95.0 0.054 1.2E-06 49.3 5.9 16 158-173 45-60 (214)
372 cd01121 Sms Sms (bacterial rad 95.0 0.19 4.1E-06 49.8 10.1 51 157-211 82-132 (372)
373 PRK06067 flagellar accessory p 95.0 0.36 7.9E-06 44.6 11.6 51 157-211 25-75 (234)
374 PRK13341 recombination factor 94.9 0.16 3.4E-06 54.8 10.2 39 262-305 109-147 (725)
375 COG0593 DnaA ATPase involved i 94.9 0.11 2.3E-06 51.6 8.2 47 262-308 175-223 (408)
376 PRK14971 DNA polymerase III su 94.9 0.24 5.3E-06 52.5 11.4 117 160-302 42-159 (614)
377 PRK07940 DNA polymerase III su 94.9 0.26 5.6E-06 49.2 10.9 43 260-304 115-157 (394)
378 PRK13851 type IV secretion sys 94.8 0.046 9.9E-07 53.4 5.4 45 153-201 158-202 (344)
379 PRK14873 primosome assembly pr 94.8 0.24 5.1E-06 52.9 11.0 89 343-432 172-264 (665)
380 COG3972 Superfamily I DNA and 94.7 0.12 2.7E-06 51.4 7.9 80 130-212 151-230 (660)
381 PRK06871 DNA polymerase III su 94.7 0.48 1E-05 45.9 12.0 35 144-178 4-45 (325)
382 COG4626 Phage terminase-like p 94.7 0.21 4.5E-06 50.9 9.7 148 142-301 61-223 (546)
383 COG1110 Reverse gyrase [DNA re 94.7 0.11 2.3E-06 56.3 8.0 72 346-417 114-191 (1187)
384 PRK13900 type IV secretion sys 94.7 0.11 2.3E-06 50.7 7.5 45 153-201 156-200 (332)
385 PRK07133 DNA polymerase III su 94.7 0.22 4.7E-06 53.2 10.2 18 160-177 43-60 (725)
386 PHA00729 NTP-binding motif con 94.7 0.13 2.9E-06 46.7 7.5 15 159-173 19-33 (226)
387 TIGR02397 dnaX_nterm DNA polym 94.6 0.15 3.4E-06 50.4 8.8 16 159-174 38-53 (355)
388 PRK06090 DNA polymerase III su 94.6 0.39 8.5E-06 46.4 11.0 36 143-178 4-46 (319)
389 COG0541 Ffh Signal recognition 94.6 0.64 1.4E-05 46.0 12.3 131 160-315 103-236 (451)
390 cd00561 CobA_CobO_BtuR ATP:cor 94.5 0.44 9.5E-06 40.9 9.9 53 260-312 93-147 (159)
391 PRK08939 primosomal protein Dn 94.5 0.28 6.2E-06 47.2 9.8 27 157-184 156-182 (306)
392 PRK05986 cob(I)alamin adenolsy 94.5 0.12 2.5E-06 45.7 6.5 144 156-312 21-167 (191)
393 KOG0733 Nuclear AAA ATPase (VC 94.3 0.2 4.3E-06 51.4 8.5 82 261-354 603-694 (802)
394 PF03266 NTPase_1: NTPase; In 94.3 0.017 3.6E-07 50.4 0.9 50 261-316 94-146 (168)
395 PRK10436 hypothetical protein; 94.2 0.089 1.9E-06 53.6 6.0 40 144-184 203-244 (462)
396 TIGR00767 rho transcription te 94.2 0.27 5.9E-06 48.6 8.9 29 155-184 166-194 (415)
397 PHA00350 putative assembly pro 94.1 0.3 6.5E-06 48.5 9.3 25 160-184 4-29 (399)
398 TIGR00643 recG ATP-dependent D 94.1 0.28 6.1E-06 52.5 9.9 76 356-431 283-363 (630)
399 PRK14953 DNA polymerase III su 94.0 0.49 1.1E-05 48.8 11.0 18 160-177 41-58 (486)
400 PRK07993 DNA polymerase III su 94.0 0.26 5.6E-06 48.2 8.5 35 143-177 3-44 (334)
401 cd01129 PulE-GspE PulE/GspE Th 94.0 0.13 2.8E-06 48.5 6.3 50 144-196 65-116 (264)
402 COG2255 RuvB Holliday junction 93.9 0.12 2.6E-06 48.0 5.6 16 159-174 54-69 (332)
403 COG1222 RPT1 ATP-dependent 26S 93.9 0.16 3.4E-06 48.8 6.4 16 158-173 186-201 (406)
404 TIGR03600 phage_DnaB phage rep 93.8 0.48 1E-05 48.1 10.5 38 156-195 193-230 (421)
405 KOG0739 AAA+-type ATPase [Post 93.8 0.86 1.9E-05 42.7 10.7 38 432-478 400-437 (439)
406 PLN00020 ribulose bisphosphate 93.7 0.042 9.1E-07 53.3 2.5 15 159-173 150-164 (413)
407 PRK08058 DNA polymerase III su 93.7 0.42 9E-06 46.7 9.5 40 260-300 108-147 (329)
408 KOG0737 AAA+-type ATPase [Post 93.7 0.28 6E-06 47.3 7.8 53 121-173 90-143 (386)
409 TIGR00635 ruvB Holliday juncti 93.7 0.14 3E-06 49.5 6.1 17 158-174 31-47 (305)
410 COG1702 PhoH Phosphate starvat 93.7 0.2 4.3E-06 47.9 6.8 56 140-196 126-181 (348)
411 TIGR03877 thermo_KaiC_1 KaiC d 93.7 0.11 2.4E-06 48.1 5.2 52 157-212 21-72 (237)
412 TIGR00580 mfd transcription-re 93.6 0.4 8.7E-06 53.3 10.1 76 356-431 499-579 (926)
413 TIGR02868 CydC thiol reductant 93.6 0.099 2.1E-06 54.9 5.3 40 260-299 486-525 (529)
414 COG1132 MdlB ABC-type multidru 93.6 0.16 3.5E-06 53.8 7.0 35 260-294 481-515 (567)
415 PF03796 DnaB_C: DnaB-like hel 93.6 0.29 6.3E-06 46.0 8.0 136 158-302 20-179 (259)
416 cd01130 VirB11-like_ATPase Typ 93.6 0.21 4.5E-06 44.4 6.5 40 142-182 9-49 (186)
417 COG1855 ATPase (PilT family) [ 93.6 0.14 3E-06 50.6 5.6 61 107-186 231-291 (604)
418 TIGR00708 cobA cob(I)alamin ad 93.5 0.2 4.2E-06 43.6 6.0 52 261-312 96-149 (173)
419 TIGR01420 pilT_fam pilus retra 93.5 0.19 4.1E-06 49.5 6.6 42 157-200 122-163 (343)
420 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.4 0.39 8.5E-06 40.6 7.7 31 260-290 86-116 (144)
421 PF00437 T2SE: Type II/IV secr 93.4 0.12 2.5E-06 49.1 4.9 44 155-201 125-168 (270)
422 PHA00012 I assembly protein 93.4 0.94 2E-05 43.3 10.6 26 160-185 4-29 (361)
423 TIGR02533 type_II_gspE general 93.4 0.16 3.4E-06 52.3 6.1 40 144-184 227-268 (486)
424 PRK06904 replicative DNA helic 93.3 0.98 2.1E-05 46.4 11.7 36 158-195 222-257 (472)
425 TIGR02538 type_IV_pilB type IV 93.2 0.16 3.4E-06 53.5 6.0 39 144-183 301-341 (564)
426 TIGR03878 thermo_KaiC_2 KaiC d 93.2 0.2 4.2E-06 47.2 6.0 36 157-195 36-71 (259)
427 COG2109 BtuR ATP:corrinoid ade 93.2 0.99 2.1E-05 39.4 9.6 53 261-313 121-175 (198)
428 PF03237 Terminase_6: Terminas 93.1 0.98 2.1E-05 44.7 11.4 111 161-283 1-118 (384)
429 TIGR00763 lon ATP-dependent pr 93.1 0.98 2.1E-05 49.7 12.1 16 158-173 348-363 (775)
430 TIGR02858 spore_III_AA stage I 92.8 0.93 2E-05 42.8 10.0 16 158-173 112-127 (270)
431 cd03247 ABCC_cytochrome_bd The 92.8 0.55 1.2E-05 41.3 8.0 40 260-299 114-153 (178)
432 PRK05973 replicative DNA helic 92.8 0.24 5.3E-06 45.6 5.8 55 153-211 60-114 (237)
433 KOG0741 AAA+-type ATPase [Post 92.7 1.1 2.4E-05 45.4 10.5 71 122-197 491-573 (744)
434 PRK03992 proteasome-activating 92.7 0.28 6E-06 49.2 6.7 16 158-173 166-181 (389)
435 KOG0780 Signal recognition par 92.7 0.92 2E-05 44.1 9.6 131 160-315 104-237 (483)
436 PTZ00454 26S protease regulato 92.7 0.53 1.2E-05 47.1 8.5 18 157-174 179-196 (398)
437 cd03238 ABC_UvrA The excision 92.7 0.24 5.2E-06 43.5 5.4 41 260-300 103-146 (176)
438 cd01128 rho_factor Transcripti 92.6 0.32 6.9E-06 45.3 6.5 30 154-184 13-42 (249)
439 CHL00176 ftsH cell division pr 92.4 0.34 7.4E-06 51.5 7.1 17 158-174 217-233 (638)
440 PHA03372 DNA packaging termina 92.4 0.91 2E-05 47.0 9.7 127 158-302 203-336 (668)
441 TIGR02639 ClpA ATP-dependent C 92.4 1.3 2.9E-05 48.3 11.9 17 158-174 204-220 (731)
442 TIGR00416 sms DNA repair prote 92.3 0.62 1.4E-05 47.6 8.7 51 157-211 94-144 (454)
443 COG1198 PriA Primosomal protei 92.3 0.6 1.3E-05 50.0 8.7 90 340-430 226-318 (730)
444 COG0513 SrmB Superfamily II DN 92.3 0.65 1.4E-05 48.4 9.0 68 360-431 102-180 (513)
445 PF03969 AFG1_ATPase: AFG1-lik 92.3 2.2 4.9E-05 42.1 12.2 46 260-306 125-171 (362)
446 PRK09087 hypothetical protein; 92.3 0.4 8.6E-06 44.1 6.6 39 264-304 89-127 (226)
447 cd01131 PilT Pilus retraction 92.2 0.22 4.8E-06 44.7 4.7 35 160-196 4-38 (198)
448 PRK10689 transcription-repair 92.2 0.85 1.8E-05 52.0 10.2 76 356-431 648-728 (1147)
449 TIGR01243 CDC48 AAA family ATP 92.1 0.42 9.2E-06 52.3 7.7 16 158-173 488-503 (733)
450 cd03228 ABCC_MRP_Like The MRP 92.1 0.5 1.1E-05 41.3 6.8 40 260-300 112-151 (171)
451 PRK07004 replicative DNA helic 92.1 0.77 1.7E-05 47.1 9.0 43 157-201 213-258 (460)
452 PRK13764 ATPase; Provisional 92.1 0.32 7E-06 51.0 6.3 27 157-184 257-283 (602)
453 COG2812 DnaX DNA polymerase II 92.1 0.27 5.8E-06 50.4 5.6 39 260-302 117-156 (515)
454 PRK09376 rho transcription ter 92.1 0.31 6.8E-06 48.0 5.8 28 156-184 168-195 (416)
455 PRK11034 clpA ATP-dependent Cl 92.0 0.95 2E-05 49.3 10.0 19 157-175 207-225 (758)
456 PRK00080 ruvB Holliday junctio 92.0 0.28 6.1E-06 48.0 5.6 18 158-175 52-69 (328)
457 KOG0730 AAA+-type ATPase [Post 92.0 0.48 1E-05 49.2 7.2 53 118-173 429-484 (693)
458 PRK14970 DNA polymerase III su 91.9 1.1 2.5E-05 44.4 10.0 17 159-175 41-57 (367)
459 COG5008 PilU Tfp pilus assembl 91.9 0.27 5.9E-06 45.2 4.8 23 160-183 130-152 (375)
460 TIGR03689 pup_AAA proteasome A 91.8 0.57 1.2E-05 48.3 7.7 16 158-173 217-232 (512)
461 PRK04328 hypothetical protein; 91.8 0.29 6.2E-06 45.8 5.1 52 157-212 23-74 (249)
462 TIGR03819 heli_sec_ATPase heli 91.7 0.5 1.1E-05 46.3 6.9 63 132-200 154-217 (340)
463 PRK07399 DNA polymerase III su 91.7 1.2 2.6E-05 43.1 9.4 52 248-302 111-162 (314)
464 PRK13695 putative NTPase; Prov 91.6 2.1 4.6E-05 37.4 10.3 24 159-183 2-25 (174)
465 cd01125 repA Hexameric Replica 91.6 0.88 1.9E-05 42.2 8.2 45 159-203 3-59 (239)
466 COG1219 ClpX ATP-dependent pro 91.6 0.14 3E-06 48.3 2.7 18 157-174 97-114 (408)
467 PF01637 Arch_ATPase: Archaeal 91.6 0.21 4.6E-06 45.8 4.1 39 264-302 120-164 (234)
468 PF08423 Rad51: Rad51; InterP 91.6 0.38 8.3E-06 45.1 5.7 48 150-197 26-81 (256)
469 PF12846 AAA_10: AAA-like doma 91.6 0.23 5E-06 47.7 4.4 42 157-201 1-42 (304)
470 PRK08506 replicative DNA helic 91.5 1.3 2.8E-05 45.6 10.0 35 158-195 193-227 (472)
471 KOG0729 26S proteasome regulat 91.5 3.8 8.2E-05 37.9 11.6 58 114-173 168-227 (435)
472 cd03214 ABC_Iron-Siderophores_ 91.5 0.37 8.1E-06 42.5 5.3 33 260-292 113-145 (180)
473 COG0630 VirB11 Type IV secreto 91.4 0.28 6.1E-06 47.4 4.8 55 142-200 127-182 (312)
474 cd01393 recA_like RecA is a b 91.4 0.49 1.1E-05 43.4 6.3 41 157-197 19-62 (226)
475 cd03276 ABC_SMC6_euk Eukaryoti 91.4 1.7 3.6E-05 39.1 9.5 43 260-302 129-174 (198)
476 TIGR00665 DnaB replicative DNA 91.4 1.7 3.6E-05 44.4 10.6 37 157-195 195-231 (434)
477 PRK08840 replicative DNA helic 91.3 2.2 4.9E-05 43.7 11.4 37 157-195 217-253 (464)
478 TIGR03375 type_I_sec_LssB type 91.3 0.65 1.4E-05 50.6 8.0 40 260-299 617-656 (694)
479 cd00267 ABC_ATPase ABC (ATP-bi 91.2 0.59 1.3E-05 40.1 6.2 42 260-301 96-137 (157)
480 TIGR01241 FtsH_fam ATP-depende 91.2 0.49 1.1E-05 49.1 6.7 16 158-173 89-104 (495)
481 PRK08006 replicative DNA helic 91.2 2.5 5.5E-05 43.4 11.6 36 158-195 225-260 (471)
482 cd03239 ABC_SMC_head The struc 91.2 0.22 4.8E-06 43.9 3.5 41 261-301 115-156 (178)
483 TIGR01243 CDC48 AAA family ATP 91.2 1.1 2.3E-05 49.2 9.5 17 157-173 212-228 (733)
484 PF01695 IstB_IS21: IstB-like 91.1 0.36 7.7E-06 42.5 4.7 43 155-201 45-87 (178)
485 PF13555 AAA_29: P-loop contai 91.0 0.18 3.9E-06 35.5 2.2 17 157-173 23-39 (62)
486 PF06733 DEAD_2: DEAD_2; Inte 91.0 0.11 2.5E-06 45.5 1.6 44 233-276 114-159 (174)
487 TIGR02788 VirB11 P-type DNA tr 91.0 0.39 8.5E-06 46.4 5.4 28 154-182 141-168 (308)
488 PF07088 GvpD: GvpD gas vesicl 91.0 0.8 1.7E-05 44.8 7.2 38 156-197 9-46 (484)
489 KOG0744 AAA+-type ATPase [Post 91.0 4.1 8.8E-05 38.9 11.5 24 158-182 178-201 (423)
490 PRK09165 replicative DNA helic 91.0 1.2 2.7E-05 46.1 9.2 25 158-182 218-242 (497)
491 cd03223 ABCD_peroxisomal_ALDP 90.9 0.54 1.2E-05 40.9 5.6 31 260-290 107-137 (166)
492 KOG2227 Pre-initiation complex 90.9 2.7 5.8E-05 42.1 10.8 43 158-201 176-219 (529)
493 PRK05564 DNA polymerase III su 90.8 2.6 5.6E-05 40.9 10.9 41 260-302 91-131 (313)
494 KOG0331 ATP-dependent RNA heli 90.8 2.8 6.1E-05 42.9 11.2 88 359-450 167-272 (519)
495 PF10593 Z1: Z1 domain; Inter 90.7 1.6 3.4E-05 40.4 8.8 95 381-480 110-212 (239)
496 cd03246 ABCC_Protease_Secretio 90.6 0.5 1.1E-05 41.4 5.3 41 260-300 112-152 (173)
497 cd01123 Rad51_DMC1_radA Rad51_ 90.6 0.64 1.4E-05 42.9 6.3 40 157-196 19-61 (235)
498 PLN03130 ABC transporter C fam 90.6 0.63 1.4E-05 55.4 7.5 39 260-298 1390-1428(1622)
499 PF02572 CobA_CobO_BtuR: ATP:c 90.5 1.7 3.7E-05 37.8 8.2 53 260-312 94-148 (172)
500 COG2874 FlaH Predicted ATPases 90.5 2.8 6.1E-05 37.6 9.5 127 160-303 31-167 (235)
No 1
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-83 Score=573.07 Aligned_cols=413 Identities=83% Similarity=1.281 Sum_probs=401.7
Q ss_pred hccccccCCCCCchhHHhhcCCCCCCCcccccccccCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcE
Q 011079 81 KTVQSEAAVDPSSQDWKARLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDI 160 (494)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ 160 (494)
...+++.... ...+|++..+.|+.+.+...+++..+.+..|+++.|.++++..+++.||+.|+|+|+++||.++.|+|+
T Consensus 47 ~~~qs~~~~~-~~~dwk~~l~lpp~d~R~~t~DVt~TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdi 125 (459)
T KOG0326|consen 47 LTCQSEKEEA-NGKDWKATLKLPPKDTRYKTEDVTATKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDI 125 (459)
T ss_pred cccccccccc-cchhhHHhccCCCCCccccccccccccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhh
Confidence 3344444333 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCe
Q 011079 161 LARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVH 240 (494)
Q Consensus 161 ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 240 (494)
++.+..|+|||.+|++|+++.+.......+++|++|+|+||.|..+.++++++.+++.++..+||++.++++.++....+
T Consensus 126 LaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH 205 (459)
T KOG0326|consen 126 LARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVH 205 (459)
T ss_pred hhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceE
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeE
Q 011079 241 LLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYV 320 (494)
Q Consensus 241 Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~ 320 (494)
++|+|||+++++..++...++++.++|+||||.+++.+|.+.+..++..+|+++|++++|||+|..+..|..+++.+|+.
T Consensus 206 ~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~ 285 (459)
T KOG0326|consen 206 LVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYE 285 (459)
T ss_pred EEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccccceeEEEEeehhhhHHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHH
Q 011079 321 INLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVF 400 (494)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~ 400 (494)
+++.++.+..+++++|.++.+..|++.|..++.++.....||||++...++.+++.+.+.|+.|.++|+.|.++.|.++|
T Consensus 286 INLM~eLtl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVF 365 (459)
T KOG0326|consen 286 INLMEELTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVF 365 (459)
T ss_pred eehhhhhhhcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCC
Q 011079 401 HDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEI 480 (494)
Q Consensus 401 ~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~ 480 (494)
..|++|.++.||||+.+.+|||++++++|||||+|++.++|+||+||+||.|..|.++.|++.+|.+.++++|+.||+++
T Consensus 366 HdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI 445 (459)
T KOG0326|consen 366 HDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEI 445 (459)
T ss_pred hhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcchhhhhhcC
Q 011079 481 KQIPPHIDQAIYCR 494 (494)
Q Consensus 481 ~~~~~~~~~~~~~~ 494 (494)
+++|.++|.++|+.
T Consensus 446 ~pip~~iDk~lyv~ 459 (459)
T KOG0326|consen 446 KPIPSNIDKSLYVA 459 (459)
T ss_pred ccCCCcCCcccccC
Confidence 99999999999973
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.3e-72 Score=511.67 Aligned_cols=367 Identities=35% Similarity=0.607 Sum_probs=351.1
Q ss_pred cCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc
Q 011079 116 ATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (494)
Q Consensus 116 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (494)
.....+|.++++.+++++++.+.++..|+++|.++||.++.|+|+|+.|+||||||.+|++|+++.+.+....++++|++
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLt 136 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLT 136 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEec
Confidence 34456799999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred CcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHh-cCCccccccceEEecccccc
Q 011079 196 PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSK-KGVCILKDCSMLVMDEADKL 274 (494)
Q Consensus 196 P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~-~~~~~l~~~~~iViDEah~~ 274 (494)
|||+||.|+.+.+..++..+|+.+.++.||.+...+...+.+.++|+|+|||+|++++. ...+.++.++++|+||||++
T Consensus 137 PtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrl 216 (476)
T KOG0330|consen 137 PTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRL 216 (476)
T ss_pred CcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhh
Confidence 99999999999999999999999999999999999999999999999999999999888 56777999999999999999
Q ss_pred cCCCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEeccc-ccccceeEEEEeehhhhHHHHHHHHHH
Q 011079 275 LSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDE-LTLKGITQYYAFVEERQKVHCLNTLFS 353 (494)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~ll~ 353 (494)
++++|.+.+..+++.+|..+|.+++|||||..+.++....+.+|..+..... ...+.+.+.|.+++...|...|..++.
T Consensus 217 Ld~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~ 296 (476)
T KOG0330|consen 217 LDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLN 296 (476)
T ss_pred hhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHHHH
Confidence 9999999999999999999999999999999999999999999987776643 445778899999999999999999999
Q ss_pred hcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcC
Q 011079 354 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFD 433 (494)
Q Consensus 354 ~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~ 433 (494)
+...+.+||||++...+..++-.|..+|+.+.++||.|+++.|...++.|++|.+.||||||+++||+|||.|++|||||
T Consensus 297 e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyD 376 (476)
T KOG0330|consen 297 ELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYD 376 (476)
T ss_pred hhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCcc
Q 011079 434 FPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQ 482 (494)
Q Consensus 434 ~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~ 482 (494)
+|.+..+|+||+||++|+|.+|+++.|++..|...+.+||..+++...+
T Consensus 377 iP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 377 IPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred CCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999999998865
No 3
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.5e-70 Score=531.25 Aligned_cols=370 Identities=34% Similarity=0.619 Sum_probs=348.3
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhc------CCCceEEEEE
Q 011079 121 EFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQ------DNNVIQVVIL 194 (494)
Q Consensus 121 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~------~~~~~~~lil 194 (494)
.|.++++++++.+.++..||..|+|+|.++||.+++|+|++..+.||||||++|++|++.++.. .+.++++|||
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 7999999999999999999999999999999999999999999999999999999999999976 4567899999
Q ss_pred cCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccc
Q 011079 195 VPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKL 274 (494)
Q Consensus 195 ~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~ 274 (494)
+|||+||.|+.+.+.+++..+.+.+.+++||.....+...+..+.+|+|+|||+|.++++.+...|.+++++|+||||+|
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrM 251 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRM 251 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHC-CCCCcEEEEEeecCcchHHHHHhhcCCCeEEEeccc---ccccceeEEEEeehhhhHHHHHHH
Q 011079 275 LSPEFQPSVEQLIRFL-PANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDE---LTLKGITQYYAFVEERQKVHCLNT 350 (494)
Q Consensus 275 ~~~~~~~~~~~~~~~~-~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~k~~~l~~ 350 (494)
++++|.+++++++..+ ++..|++++|||+|..++.+...|+.+|..+.+... ....++.+....++...|...|..
T Consensus 252 ldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~ 331 (519)
T KOG0331|consen 252 LDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGK 331 (519)
T ss_pred hccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHH
Confidence 9999999999999999 566689999999999999999999999888877643 344567777788888888888888
Q ss_pred HHHhc---CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCC
Q 011079 351 LFSKL---QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVN 427 (494)
Q Consensus 351 ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~ 427 (494)
++... ..+++||||.++..|++|+..|...++++..+||+.++.+|..+++.|++|++.||||||+|++|||||+|+
T Consensus 332 lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~ 411 (519)
T KOG0331|consen 332 LLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVD 411 (519)
T ss_pred HHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCcccc
Confidence 88766 467999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCccCCcchhhh
Q 011079 428 VVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQA 490 (494)
Q Consensus 428 ~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 490 (494)
+|||||+|.+.++|+||+||+||+|+.|.++.|++..+......+.+.++.....+|+.+.+.
T Consensus 412 lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~ 474 (519)
T KOG0331|consen 412 LVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEY 474 (519)
T ss_pred EEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999877654
No 4
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.2e-64 Score=521.92 Aligned_cols=376 Identities=31% Similarity=0.554 Sum_probs=340.4
Q ss_pred ccCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcC-----CCce
Q 011079 115 TATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD-----NNVI 189 (494)
Q Consensus 115 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~-----~~~~ 189 (494)
.+.+..+|+++.+++.+++.|.+.||..|+++|.++||.+++|+|+|+++|||||||++|++|++..+... +.++
T Consensus 125 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp 204 (545)
T PTZ00110 125 VPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGP 204 (545)
T ss_pred CCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCc
Confidence 45566789999999999999999999999999999999999999999999999999999999999887542 3457
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEec
Q 011079 190 QVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMD 269 (494)
Q Consensus 190 ~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViD 269 (494)
.+|||+||++||.|+.+.+..+....++.+..++|+.....+...+..+++|+|+||++|.+++......+.++++||||
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViD 284 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLD 284 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEee
Confidence 89999999999999999999999888999999999999888888888899999999999999999888889999999999
Q ss_pred ccccccCCCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcC-CCeEEEecc--cccccceeEEEEeehhhhHHH
Q 011079 270 EADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQ-KPYVINLMD--ELTLKGITQYYAFVEERQKVH 346 (494)
Q Consensus 270 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~k~~ 346 (494)
|||+|++.+|...+..++..++++.|++++|||+|.++..+...++. .+..+.+.. ......+.+.+..+....|..
T Consensus 285 EAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~ 364 (545)
T PTZ00110 285 EADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRG 364 (545)
T ss_pred hHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHH
Confidence 99999999999999999999999999999999999999998888875 454444322 122345666677777777888
Q ss_pred HHHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCC
Q 011079 347 CLNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQ 424 (494)
Q Consensus 347 ~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~ 424 (494)
.|..++... ...++||||++++.|+.+++.|...++.+..+||++++++|..+++.|++|+.+|||||+++++|||++
T Consensus 365 ~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~ 444 (545)
T PTZ00110 365 KLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVK 444 (545)
T ss_pred HHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcc
Confidence 888887765 467999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCccCCcchhhh
Q 011079 425 AVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQA 490 (494)
Q Consensus 425 ~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 490 (494)
+|++||+||+|.+.++|+||+||+||.|..|.|++|+++++......+.+.+.....++|+++.+.
T Consensus 445 ~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~ 510 (545)
T PTZ00110 445 DVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKL 510 (545)
T ss_pred cCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999987754
No 5
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-66 Score=456.40 Aligned_cols=372 Identities=41% Similarity=0.722 Sum_probs=355.6
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcH
Q 011079 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (494)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (494)
...|.+.+|.++++++++..||+.|+.+|..||+.++.|+|+++.+..|+|||..|.+.+++.+.-.....++||++|||
T Consensus 26 ~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTR 105 (400)
T KOG0328|consen 26 IPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTR 105 (400)
T ss_pred ccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChH
Confidence 35799999999999999999999999999999999999999999999999999999999999888777777999999999
Q ss_pred HHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCC
Q 011079 199 ELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE 278 (494)
Q Consensus 199 ~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~ 278 (494)
+||.|+.+++..++..+++.+....||.+..++++.+.-+.+++.+|||++++++++..+....+.++|+||||+|++.+
T Consensus 106 ELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kg 185 (400)
T KOG0328|consen 106 ELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKG 185 (400)
T ss_pred HHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred cHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEe-cccccccceeEEEEeehhhh-HHHHHHHHHHhcC
Q 011079 279 FQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINL-MDELTLKGITQYYAFVEERQ-KVHCLNTLFSKLQ 356 (494)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-k~~~l~~ll~~~~ 356 (494)
|..++-.+++.+|++.|++++|||+|.++.+...+|+.+|..+.+ .++.+..++.+++..++... |.+.|..+...+.
T Consensus 186 fk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~Lt 265 (400)
T KOG0328|consen 186 FKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLT 265 (400)
T ss_pred HHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhhe
Confidence 999999999999999999999999999999999999999977655 46778888999998887766 9999999999998
Q ss_pred CCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCC
Q 011079 357 INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPK 436 (494)
Q Consensus 357 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~ 436 (494)
....+|||+++..++-|.+.|.+.++.+..+||+|++++|.+++..|+.|+.+|||+|+++++|+|+|.|.+|||||+|.
T Consensus 266 ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~ 345 (400)
T KOG0328|consen 266 ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPN 345 (400)
T ss_pred hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCccCCcchhhh
Q 011079 437 NSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQA 490 (494)
Q Consensus 437 s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 490 (494)
+.+.|+||+||.||.|+.|.++.|+..+|...+..+++++.+.+.++|.++-+.
T Consensus 346 nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad~ 399 (400)
T KOG0328|consen 346 NRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVADL 399 (400)
T ss_pred cHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhhc
Confidence 999999999999999999999999999999999999999999999999987653
No 6
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-64 Score=516.48 Aligned_cols=362 Identities=40% Similarity=0.682 Sum_probs=339.8
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhc--CCCceEEEEEcCc
Q 011079 120 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQ--DNNVIQVVILVPT 197 (494)
Q Consensus 120 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~--~~~~~~~lil~P~ 197 (494)
..|.++++++.+++++.+.||..|+|+|..+||.++.|+|+++.++||||||++|.+|+++.+.. ......+||++||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 56999999999999999999999999999999999999999999999999999999999999874 2222129999999
Q ss_pred HHHHHHHHHHHHHHhccC-CcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccC
Q 011079 198 RELALQTSQVCKELGKHL-NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS 276 (494)
Q Consensus 198 ~~la~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~ 276 (494)
|+||.|+.+.+..++... ++.+..++||.....+...+..+++|+|+|||+|++++....+.+..+.++|+||||+|++
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd 188 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLD 188 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhc
Confidence 999999999999999998 7999999999999999988888899999999999999999988999999999999999999
Q ss_pred CCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecc-cc--cccceeEEEEeehhhh-HHHHHHHHH
Q 011079 277 PEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMD-EL--TLKGITQYYAFVEERQ-KVHCLNTLF 352 (494)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~-k~~~l~~ll 352 (494)
++|.+.+..++..++.+.|++++|||+|..+..+...++.+|..+.+.. .. ....+.+++..+.... |...|..++
T Consensus 189 ~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll 268 (513)
T COG0513 189 MGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLL 268 (513)
T ss_pred CCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998777762 33 5678899999888776 999999999
Q ss_pred HhcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEc
Q 011079 353 SKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINF 432 (494)
Q Consensus 353 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~ 432 (494)
......++||||++++.++.++..|...|+.+..+||+|++++|.++++.|++|..+||||||++++||||++|.+||||
T Consensus 269 ~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Viny 348 (513)
T COG0513 269 KDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINY 348 (513)
T ss_pred hcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEc
Confidence 99888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHhccccCCCCcceEEEEeccc-chHHHHHHHHHhCCCCc
Q 011079 433 DFPKNSETYLHRVGRSGRFGHLGLAVNLITYE-DRFNLYRIEQELGTEIK 481 (494)
Q Consensus 433 ~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~-~~~~~~~l~~~~~~~~~ 481 (494)
|.|.+.+.|+||+||+||+|..|.++.|+++. |...+..+++.++..++
T Consensus 349 D~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 349 DLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred cCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999986 89999999999877644
No 7
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=3.4e-64 Score=477.38 Aligned_cols=373 Identities=34% Similarity=0.557 Sum_probs=344.1
Q ss_pred cccCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhc---------
Q 011079 114 VTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQ--------- 184 (494)
Q Consensus 114 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~--------- 184 (494)
..+.+..+|++.+++.++++.+...||..|+|+|+.+||..++++|+|.+++||||||++|++|++.++..
T Consensus 239 ~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en 318 (673)
T KOG0333|consen 239 RLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLEN 318 (673)
T ss_pred CCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhh
Confidence 34566778999999999999999999999999999999999999999999999999999999999988743
Q ss_pred CCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccc
Q 011079 185 DNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCS 264 (494)
Q Consensus 185 ~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~ 264 (494)
...++.++|+.|||+|++|+.+....+++.+++.++.++|+....++-..+..+|+|+|+||++|++.+.+..+.+..+.
T Consensus 319 ~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qct 398 (673)
T KOG0333|consen 319 NIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCT 398 (673)
T ss_pred cccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCc
Confidence 23567899999999999999999999999999999999999999999889999999999999999999998888899999
Q ss_pred eEEecccccccCCCcHHHHHHHHHHCCCC-------------------------CcEEEEEeecCcchHHHHHhhcCCCe
Q 011079 265 MLVMDEADKLLSPEFQPSVEQLIRFLPAN-------------------------RQILMFSATFPVTVKDFKDKYLQKPY 319 (494)
Q Consensus 265 ~iViDEah~~~~~~~~~~~~~~~~~~~~~-------------------------~~~i~~SATl~~~~~~~~~~~~~~~~ 319 (494)
+||+|||++|.+++|.+.+.+++..+|.. +|.++||||+|+.+..++..|+.+|.
T Consensus 399 yvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv 478 (673)
T KOG0333|consen 399 YVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPV 478 (673)
T ss_pred eEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCe
Confidence 99999999999999999999999888631 58899999999999999999999999
Q ss_pred EEEecc-cccccceeEEEEeehhhhHHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHH
Q 011079 320 VINLMD-ELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNR 398 (494)
Q Consensus 320 ~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~ 398 (494)
.+.+.. ..+.+.+.+...++....|...|..++......++|||+|+++.|+.|++.|.+.++.+..+||+-++++|+.
T Consensus 479 ~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~ 558 (673)
T KOG0333|consen 479 VVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQREN 558 (673)
T ss_pred EEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHH
Confidence 888753 4445668888888899999999999999887789999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCC
Q 011079 399 VFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGT 478 (494)
Q Consensus 399 i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~ 478 (494)
++..|++|...|||||+++++|||||+|.+|||||+++|+++|+||+||+||+|+.|.++.|+++.|...++.|.+.+..
T Consensus 559 aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~e 638 (673)
T KOG0333|consen 559 ALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALRE 638 (673)
T ss_pred HHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888887763
Q ss_pred -CCccCCcc
Q 011079 479 -EIKQIPPH 486 (494)
Q Consensus 479 -~~~~~~~~ 486 (494)
+....|++
T Consensus 639 s~~s~~P~E 647 (673)
T KOG0333|consen 639 SVKSHCPPE 647 (673)
T ss_pred hhhccCChh
Confidence 33444443
No 8
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.9e-62 Score=500.90 Aligned_cols=363 Identities=35% Similarity=0.608 Sum_probs=338.6
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHH
Q 011079 120 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE 199 (494)
Q Consensus 120 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~ 199 (494)
.+|.++++++.+++++.+.||..|+|+|.++|+.++.|+|+++++|||||||++|++|+++.+.......++||+|||++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptre 83 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRE 83 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHH
Confidence 46999999999999999999999999999999999999999999999999999999999999876655668999999999
Q ss_pred HHHHHHHHHHHHhccC-CcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCC
Q 011079 200 LALQTSQVCKELGKHL-NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE 278 (494)
Q Consensus 200 la~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~ 278 (494)
|+.|+.+.++.+.... ++.+..++|+.+...+...+...++|+|+||++|.+++.+....+.++++||+||||+|++.+
T Consensus 84 La~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g 163 (460)
T PRK11776 84 LADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMG 163 (460)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcC
Confidence 9999999999987654 788999999999988888888899999999999999998888889999999999999999999
Q ss_pred cHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeehhhhHHHHHHHHHHhcCCC
Q 011079 279 FQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQIN 358 (494)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~ 358 (494)
|...+..++..++...|++++|||++..+..+...++.+|..+.+........+.+.+...+...|...+..++......
T Consensus 164 ~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~ 243 (460)
T PRK11776 164 FQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDERLPALQRLLLHHQPE 243 (460)
T ss_pred cHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999998887765555556777777777777999999999888888
Q ss_pred cEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCCCH
Q 011079 359 QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNS 438 (494)
Q Consensus 359 ~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~ 438 (494)
++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|..+|||||+++++|||+|++++||++++|.+.
T Consensus 244 ~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~ 323 (460)
T PRK11776 244 SCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDP 323 (460)
T ss_pred ceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCcc
Q 011079 439 ETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQ 482 (494)
Q Consensus 439 ~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~ 482 (494)
.+|+||+||+||.|..|.|++|+++.|...+..+++.++..++.
T Consensus 324 ~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~ 367 (460)
T PRK11776 324 EVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNW 367 (460)
T ss_pred hHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCce
Confidence 99999999999999999999999999999999999999887654
No 9
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.7e-62 Score=495.94 Aligned_cols=368 Identities=30% Similarity=0.485 Sum_probs=332.9
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcC-------CCceEE
Q 011079 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD-------NNVIQV 191 (494)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~-------~~~~~~ 191 (494)
..+|++++|++.+++++.+.||..|+++|.++||.++.|+|++++||||||||++|++|+++.+... ..++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 3579999999999999999999999999999999999999999999999999999999999888542 234689
Q ss_pred EEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEeccc
Q 011079 192 VILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEA 271 (494)
Q Consensus 192 lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEa 271 (494)
|||+||++||.|+.+.+..+....++.+..++|+.....+...+..+++|+|+||++|.+++......+.++++||+|||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEa 166 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA 166 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecH
Confidence 99999999999999999999999999999999999888887777788999999999999999888888999999999999
Q ss_pred ccccCCCcHHHHHHHHHHCCC--CCcEEEEEeecCcchHHHHHhhcCCCeEEEeccc-ccccceeEEEEeehhhhHHHHH
Q 011079 272 DKLLSPEFQPSVEQLIRFLPA--NRQILMFSATFPVTVKDFKDKYLQKPYVINLMDE-LTLKGITQYYAFVEERQKVHCL 348 (494)
Q Consensus 272 h~~~~~~~~~~~~~~~~~~~~--~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l 348 (494)
|++++.+|...+..++..++. ..+.+++|||++..+.++...++.+|..+.+... .....+.+.+.......|...+
T Consensus 167 d~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~l 246 (423)
T PRK04837 167 DRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLL 246 (423)
T ss_pred HHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHHH
Confidence 999999999999999998874 4567899999999999998888888877765432 2234455555566667788888
Q ss_pred HHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCE
Q 011079 349 NTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNV 428 (494)
Q Consensus 349 ~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~ 428 (494)
..++......++||||+++..|+.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++
T Consensus 247 ~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~ 326 (423)
T PRK04837 247 QTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTH 326 (423)
T ss_pred HHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCE
Confidence 88888777789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCccCCcc
Q 011079 429 VINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPH 486 (494)
Q Consensus 429 VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 486 (494)
||+||+|.+..+|+||+||+||.|+.|.|++|+++.+...+..+++.++..++..+..
T Consensus 327 VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 384 (423)
T PRK04837 327 VFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSKYD 384 (423)
T ss_pred EEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCccCC
Confidence 9999999999999999999999999999999999999999999999999987655543
No 10
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.7e-61 Score=502.53 Aligned_cols=366 Identities=33% Similarity=0.570 Sum_probs=337.6
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHH
Q 011079 120 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE 199 (494)
Q Consensus 120 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~ 199 (494)
.+|.+++|++.++++|.+.||..|+|+|.++|+.++.++|+|+.||||||||++|.+|+++.+......+++||||||++
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTre 85 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRE 85 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHH
Confidence 35999999999999999999999999999999999999999999999999999999999999876656679999999999
Q ss_pred HHHHHHHHHHHHhccC-CcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCC
Q 011079 200 LALQTSQVCKELGKHL-NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE 278 (494)
Q Consensus 200 la~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~ 278 (494)
|+.|+.+.+..+...+ ++.+..++|+.....+...+...++|+|+||++|++++.+....++++++|||||||+|++.+
T Consensus 86 La~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~g 165 (629)
T PRK11634 86 LAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMG 165 (629)
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcc
Confidence 9999999999987665 788999999999888888888889999999999999998888889999999999999999999
Q ss_pred cHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEeccc-ccccceeEEEEeehhhhHHHHHHHHHHhcCC
Q 011079 279 FQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDE-LTLKGITQYYAFVEERQKVHCLNTLFSKLQI 357 (494)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~ 357 (494)
|...+..++..++...|+++||||+|..+..+...++.++..+.+... ...+.+.+.+..+....|...|..++.....
T Consensus 166 f~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~~ 245 (629)
T PRK11634 166 FIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 (629)
T ss_pred cHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999998877765433 2345566777777777888889998888777
Q ss_pred CcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCCC
Q 011079 358 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKN 437 (494)
Q Consensus 358 ~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s 437 (494)
.++||||+++..++.++..|.+.++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||+||+|.+
T Consensus 246 ~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~ 325 (629)
T PRK11634 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMD 325 (629)
T ss_pred CCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCccCCc
Q 011079 438 SETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPP 485 (494)
Q Consensus 438 ~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 485 (494)
.++|+||+|||||.|+.|.|++|+++.|...+..+++.++..+++++.
T Consensus 326 ~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~ 373 (629)
T PRK11634 326 SESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVEL 373 (629)
T ss_pred HHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceecC
Confidence 999999999999999999999999999999999999999988877644
No 11
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.9e-61 Score=491.33 Aligned_cols=361 Identities=35% Similarity=0.607 Sum_probs=332.1
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCC------CceEEEEE
Q 011079 121 EFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN------NVIQVVIL 194 (494)
Q Consensus 121 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~------~~~~~lil 194 (494)
+|++++|++.+++.+.+.||..|+++|.++|+.++.++|+|+++|||||||++|++|+++.+.... ...++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 688999999999999999999999999999999999999999999999999999999999986432 23479999
Q ss_pred cCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccc
Q 011079 195 VPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKL 274 (494)
Q Consensus 195 ~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~ 274 (494)
+||++||.|+.+.+..+....++.+..++|+.....+...+...++|+|+||++|++++......++++++|||||||++
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 99999999999999999988899999999999988887788888999999999999988887778999999999999999
Q ss_pred cCCCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecc-cccccceeEEEEeehhhhHHHHHHHHHH
Q 011079 275 LSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMD-ELTLKGITQYYAFVEERQKVHCLNTLFS 353 (494)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~ll~ 353 (494)
++.+|...+..++..++...|++++|||++.++..+...++.++..+.+.. ......+.+++...+...+...+..++.
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~~ 241 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIG 241 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999989999999998887776543 2334556677777777788888888887
Q ss_pred hcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcC
Q 011079 354 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFD 433 (494)
Q Consensus 354 ~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~ 433 (494)
.....++||||+++..++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++||||+
T Consensus 242 ~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~ 321 (456)
T PRK10590 242 KGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYE 321 (456)
T ss_pred cCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeC
Confidence 77778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCc
Q 011079 434 FPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIK 481 (494)
Q Consensus 434 ~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~ 481 (494)
+|.+..+|+||+||+||.|..|.|++|++.+|...+..+++.++.+++
T Consensus 322 ~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~ 369 (456)
T PRK10590 322 LPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIP 369 (456)
T ss_pred CCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999999999999999999988774
No 12
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.4e-63 Score=466.53 Aligned_cols=357 Identities=35% Similarity=0.551 Sum_probs=328.6
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCC---CceEEEEEc
Q 011079 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN---NVIQVVILV 195 (494)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~---~~~~~lil~ 195 (494)
..+|.++.|+..+++++...||..|+|+|..+||..+-|+|++.+|.||||||.+|.+|+|+++.-.+ ...+|||||
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~ 259 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLV 259 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEe
Confidence 34799999999999999999999999999999999999999999999999999999999999986443 345999999
Q ss_pred CcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcC-CccccccceEEecccccc
Q 011079 196 PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG-VCILKDCSMLVMDEADKL 274 (494)
Q Consensus 196 P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~-~~~l~~~~~iViDEah~~ 274 (494)
|||+|+.|++++.+.++..+.+.++...||.+.+.+...+...++|+|+|||+|.+++.+. .++++++.++|+||||+|
T Consensus 260 PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRM 339 (691)
T KOG0338|consen 260 PTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRM 339 (691)
T ss_pred ccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988765 667899999999999999
Q ss_pred cCCCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEeccc-ccccceeEEEEeeh---hhhHHHHHHH
Q 011079 275 LSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDE-LTLKGITQYYAFVE---ERQKVHCLNT 350 (494)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~k~~~l~~ 350 (494)
++.+|...+..+++.|+.++|.++|||||+..+.++...-+++|..+.+... ...+.+.+.|..+. +..+...|..
T Consensus 340 LeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~ 419 (691)
T KOG0338|consen 340 LEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLAS 419 (691)
T ss_pred HHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHH
Confidence 9999999999999999999999999999999999999999999988877643 33455666655443 2346677788
Q ss_pred HHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEE
Q 011079 351 LFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVI 430 (494)
Q Consensus 351 ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI 430 (494)
++...-...++||+.+++.|..+.-.|--+|+.+.-+||++++.+|-..++.|++++++|||||+++++|+||++|.+||
T Consensus 420 l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVI 499 (691)
T KOG0338|consen 420 LITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVI 499 (691)
T ss_pred HHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEE
Confidence 88777778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHH
Q 011079 431 NFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQE 475 (494)
Q Consensus 431 ~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~ 475 (494)
||..|.+...|+||+||+.|+|+.|.++.|+.+.|...+..+-+.
T Consensus 500 Ny~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 500 NYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred eccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 999999999999999999999999999999999998888877665
No 13
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.2e-61 Score=495.04 Aligned_cols=364 Identities=30% Similarity=0.515 Sum_probs=329.1
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcC-------CCceEEE
Q 011079 120 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD-------NNVIQVV 192 (494)
Q Consensus 120 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~-------~~~~~~l 192 (494)
.+|++++|++.+++.|.+.||..|+|+|.++||.++.|+|+++.+|||||||++|++|+++.+... ...+++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 369999999999999999999999999999999999999999999999999999999999987542 1246899
Q ss_pred EEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcC-CccccccceEEeccc
Q 011079 193 ILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG-VCILKDCSMLVMDEA 271 (494)
Q Consensus 193 il~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~-~~~l~~~~~iViDEa 271 (494)
||+||++|+.|+.+.+..++...++.+..++|+.....+...+...++|+|+||++|++++... ...+..+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 9999999999999999999999999999999999988887777788999999999999988764 456888999999999
Q ss_pred ccccCCCcHHHHHHHHHHCCC--CCcEEEEEeecCcchHHHHHhhcCCCeEEEec-ccccccceeEEEEeehhhhHHHHH
Q 011079 272 DKLLSPEFQPSVEQLIRFLPA--NRQILMFSATFPVTVKDFKDKYLQKPYVINLM-DELTLKGITQYYAFVEERQKVHCL 348 (494)
Q Consensus 272 h~~~~~~~~~~~~~~~~~~~~--~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l 348 (494)
|+|++.+|...+..++..++. ..|++++|||++..+..+...++..+..+.+. .......+.+.+.......|...+
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L 248 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTLL 248 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHHH
Confidence 999999999999999999876 68999999999999999999988887655443 233444566666677777788888
Q ss_pred HHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCE
Q 011079 349 NTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNV 428 (494)
Q Consensus 349 ~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~ 428 (494)
..++......++||||+++..++.+++.|.+.++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||++++++
T Consensus 249 ~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~ 328 (572)
T PRK04537 249 LGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKY 328 (572)
T ss_pred HHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCE
Confidence 88888777789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCccC
Q 011079 429 VINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQI 483 (494)
Q Consensus 429 VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~~ 483 (494)
||+||+|.+..+|+||+||+||.|..|.|++|+++.+...+..+++.++.+++..
T Consensus 329 VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~~ 383 (572)
T PRK04537 329 VYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPVE 383 (572)
T ss_pred EEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCcc
Confidence 9999999999999999999999999999999999999999999999988876433
No 14
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.5e-60 Score=490.44 Aligned_cols=375 Identities=32% Similarity=0.505 Sum_probs=335.8
Q ss_pred ccCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhc-------CCC
Q 011079 115 TATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQ-------DNN 187 (494)
Q Consensus 115 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~-------~~~ 187 (494)
.+.+..+|+++++++.+++.+.+.||..|+|+|.++||.++.|+|+++++|||||||++|++|++..+.. ...
T Consensus 116 ~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~ 195 (518)
T PLN00206 116 VPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQR 195 (518)
T ss_pred CCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccC
Confidence 3456678999999999999999999999999999999999999999999999999999999999987642 224
Q ss_pred ceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEE
Q 011079 188 VIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLV 267 (494)
Q Consensus 188 ~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iV 267 (494)
++++|||+||++|+.|+.+.++.+....++.+..++|+.....+...+..+++|+|+||++|.+++.+....+.++++||
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lV 275 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLV 275 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEE
Confidence 57899999999999999999999998888899999999988888888888899999999999999988878899999999
Q ss_pred ecccccccCCCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccc-cccceeEEEEeehhhhHHH
Q 011079 268 MDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDEL-TLKGITQYYAFVEERQKVH 346 (494)
Q Consensus 268 iDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~ 346 (494)
+||||+|++.+|...+..++..++ +.|++++|||++..+..+...++.++..+.+.... ....+.+...++....+..
T Consensus 276 iDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~ 354 (518)
T PLN00206 276 LDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQ 354 (518)
T ss_pred eecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHH
Confidence 999999999999999999998884 68999999999999999999998888777664322 2234556666677777777
Q ss_pred HHHHHHHhcC--CCcEEEEecChhHHHHHHHHHHH-cCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCC
Q 011079 347 CLNTLFSKLQ--INQSIIFCNSVNRVELLAKKITE-LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDI 423 (494)
Q Consensus 347 ~l~~ll~~~~--~~~~lVF~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi 423 (494)
.+..++.... ..++||||+++..++.+++.|.. .++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+
T Consensus 355 ~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDi 434 (518)
T PLN00206 355 KLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDL 434 (518)
T ss_pred HHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCc
Confidence 7777776543 35899999999999999999975 58999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCccCCcchhhh
Q 011079 424 QAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQA 490 (494)
Q Consensus 424 ~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 490 (494)
|++++||+||+|.+..+|+||+|||||.|..|.|++|+++++...+..+.+.+...-.++|+++...
T Consensus 435 p~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~ 501 (518)
T PLN00206 435 LRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIPRELANS 501 (518)
T ss_pred ccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999998888999987653
No 15
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-61 Score=437.77 Aligned_cols=367 Identities=34% Similarity=0.531 Sum_probs=338.2
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcH
Q 011079 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (494)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (494)
...|..+++++.+.+.++..|+..|+|+|..+||.|++|+|+|.+|.||||||++|.+|+++.+.++..+..++|++|||
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTr 85 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTR 85 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcC----CccccccceEEecccccc
Q 011079 199 ELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG----VCILKDCSMLVMDEADKL 274 (494)
Q Consensus 199 ~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~----~~~l~~~~~iViDEah~~ 274 (494)
+||.|+.+.+..+++.+++++.+++||.+.-.+...+...+|++|+|||++.+++..+ ...+.++.++|+||||++
T Consensus 86 ELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrv 165 (442)
T KOG0340|consen 86 ELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRV 165 (442)
T ss_pred HHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhh
Confidence 9999999999999999999999999999998888899999999999999999988765 333788999999999999
Q ss_pred cCCCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCC--CeEEEe-cccccccceeEEEEeehhhhHHHHHHHH
Q 011079 275 LSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQK--PYVINL-MDELTLKGITQYYAFVEERQKVHCLNTL 351 (494)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~k~~~l~~l 351 (494)
++..|...++.+...+|..+|.+++|||++..+......-... ++.... .+......+.+.|..++...+...+..+
T Consensus 166 L~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~ 245 (442)
T KOG0340|consen 166 LAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHL 245 (442)
T ss_pred hccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHH
Confidence 9999999999999999999999999999987777766655554 333333 3444556788888999998888888888
Q ss_pred HHhc---CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCE
Q 011079 352 FSKL---QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNV 428 (494)
Q Consensus 352 l~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~ 428 (494)
+... +.+.++||+++..+|+.|+..|..+++.+..+||.|++.+|-..+.+|+++..+||||||++++|+|||.|..
T Consensus 246 Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~L 325 (442)
T KOG0340|consen 246 LRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVEL 325 (442)
T ss_pred HhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeE
Confidence 8665 3568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCccCCc
Q 011079 429 VINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPP 485 (494)
Q Consensus 429 VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 485 (494)
|||+|.|.++.+|+||+||+.|+|+.|.++.++++.|...+..+++..++.+.+.+.
T Consensus 326 VvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~ 382 (442)
T KOG0340|consen 326 VVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNK 382 (442)
T ss_pred EEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccc
Confidence 999999999999999999999999999999999999999999999999999988776
No 16
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2.9e-61 Score=455.41 Aligned_cols=363 Identities=36% Similarity=0.529 Sum_probs=332.4
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcC----CCceEEEEE
Q 011079 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD----NNVIQVVIL 194 (494)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~----~~~~~~lil 194 (494)
...|+++.|++..++++.++||..++++|..+|+.++.|+|+++.|.||||||++|++|+++.+... .++..++|+
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi 160 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLII 160 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEe
Confidence 3468889999999999999999999999999999999999999999999999999999999998753 355689999
Q ss_pred cCcHHHHHHHHHHHHHHhccC-CcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCC-ccccccceEEecccc
Q 011079 195 VPTRELALQTSQVCKELGKHL-NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGV-CILKDCSMLVMDEAD 272 (494)
Q Consensus 195 ~P~~~la~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~-~~l~~~~~iViDEah 272 (494)
||||+||.|+..+++++.... ++.++.+.||+....+...+..++.|+|+|||+|++++++.. +...+++++|+||||
T Consensus 161 ~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD 240 (543)
T KOG0342|consen 161 CPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD 240 (543)
T ss_pred cccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch
Confidence 999999999999999999888 899999999999999888888899999999999999998753 345777899999999
Q ss_pred cccCCCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCC-CeEEEecc---cccccceeEEEEeehhhhHHHHH
Q 011079 273 KLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQK-PYVINLMD---ELTLKGITQYYAFVEERQKVHCL 348 (494)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~k~~~l 348 (494)
++++.+|...++.++..+|..+|.+++|||.+.++.++....+.. +..++..+ ..+...+.+-|...+...++..+
T Consensus 241 rlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll 320 (543)
T KOG0342|consen 241 RLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLL 320 (543)
T ss_pred hhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHH
Confidence 999999999999999999999999999999999999999887765 66666653 34456788888888888888888
Q ss_pred HHHHHhcCC-CcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCC
Q 011079 349 NTLFSKLQI-NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVN 427 (494)
Q Consensus 349 ~~ll~~~~~-~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~ 427 (494)
..++.+... .++||||+|...+..+++.|....++|.-+||..++..|..++..|++.+.-||||||+++||+|+|+|+
T Consensus 321 ~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~ 400 (543)
T KOG0342|consen 321 YTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVD 400 (543)
T ss_pred HHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCce
Confidence 888888766 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCccCC
Q 011079 428 VVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIP 484 (494)
Q Consensus 428 ~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~~~ 484 (494)
.||+||+|.++.+|+||+||+||.|..|.+++|+.+.+...++.|. ..++++.+
T Consensus 401 ~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK---~lpl~~~e 454 (543)
T KOG0342|consen 401 WVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK---KLPLEEFE 454 (543)
T ss_pred EEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh---hCCCcccC
Confidence 9999999999999999999999999999999999999999999997 44554444
No 17
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.7e-59 Score=473.88 Aligned_cols=362 Identities=35% Similarity=0.587 Sum_probs=325.9
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcC----CCceEEEEEcC
Q 011079 121 EFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD----NNVIQVVILVP 196 (494)
Q Consensus 121 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~----~~~~~~lil~P 196 (494)
+|+++++++.+++.+.+.||..|+++|.++|+.+++++|+++++|||+|||++|++|+++.+... ....++||++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 58999999999999999999999999999999999999999999999999999999999987532 23458999999
Q ss_pred cHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccC
Q 011079 197 TRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS 276 (494)
Q Consensus 197 ~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~ 276 (494)
|++|+.|+.+.+..++...++.+..++|+.....+...+...++|+|+||++|++++......+.++++||+||||+|++
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~ 161 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLD 161 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhC
Confidence 99999999999999999999999999999998888777778889999999999999888877889999999999999999
Q ss_pred CCcHHHHHHHHHHCCCCCcEEEEEeecCc-chHHHHHhhcCCCeEEEeccc-ccccceeEEEEeeh-hhhHHHHHHHHHH
Q 011079 277 PEFQPSVEQLIRFLPANRQILMFSATFPV-TVKDFKDKYLQKPYVINLMDE-LTLKGITQYYAFVE-ERQKVHCLNTLFS 353 (494)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~i~~SATl~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~k~~~l~~ll~ 353 (494)
.+|...+..+...++...|++++|||++. .+..+...++.++..+..... .....+.+++...+ ...+...+..++.
T Consensus 162 ~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~ 241 (434)
T PRK11192 162 MGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLK 241 (434)
T ss_pred CCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHh
Confidence 99999999999999888999999999974 477777788888776655432 22344556655554 3567888888887
Q ss_pred hcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcC
Q 011079 354 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFD 433 (494)
Q Consensus 354 ~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~ 433 (494)
.....++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|..+|||||+++++|||+|++++||+|+
T Consensus 242 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d 321 (434)
T PRK11192 242 QPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFD 321 (434)
T ss_pred cCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEEC
Confidence 76778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCcc
Q 011079 434 FPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQ 482 (494)
Q Consensus 434 ~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~ 482 (494)
+|.+...|+||+||+||.|..|.|++|++..|...+..+++++..+++.
T Consensus 322 ~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~~ 370 (434)
T PRK11192 322 MPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLKA 370 (434)
T ss_pred CCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999888776543
No 18
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.3e-59 Score=476.18 Aligned_cols=371 Identities=33% Similarity=0.566 Sum_probs=331.1
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCC-------CceEEE
Q 011079 120 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN-------NVIQVV 192 (494)
Q Consensus 120 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~-------~~~~~l 192 (494)
..|.++++++.++++|.+.||..|+++|.++|+.+++|+|+|+.++||||||++|++|+++.+.... ..+++|
T Consensus 87 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aL 166 (475)
T PRK01297 87 TRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRAL 166 (475)
T ss_pred CCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEE
Confidence 4688999999999999999999999999999999999999999999999999999999999886542 146899
Q ss_pred EEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhc-CCCeEEEEchHHHHHhHhcCCccccccceEEeccc
Q 011079 193 ILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLY-QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEA 271 (494)
Q Consensus 193 il~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEa 271 (494)
||+||++|+.|+.+.++.+....++.+..++|+.....+...+. ..++|+|+||++|+.++..+...++++++||||||
T Consensus 167 il~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEa 246 (475)
T PRK01297 167 IIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEA 246 (475)
T ss_pred EEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechH
Confidence 99999999999999999999888999999999988776665553 46899999999999998888888999999999999
Q ss_pred ccccCCCcHHHHHHHHHHCCC--CCcEEEEEeecCcchHHHHHhhcCCCeEEEeccc-ccccceeEEEEeehhhhHHHHH
Q 011079 272 DKLLSPEFQPSVEQLIRFLPA--NRQILMFSATFPVTVKDFKDKYLQKPYVINLMDE-LTLKGITQYYAFVEERQKVHCL 348 (494)
Q Consensus 272 h~~~~~~~~~~~~~~~~~~~~--~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l 348 (494)
|++++.+|...+..++..++. +.|++++|||++.++.++...++.++..+.+... .....+.+.+.......+...+
T Consensus 247 h~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~~l 326 (475)
T PRK01297 247 DRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLL 326 (475)
T ss_pred HHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHHHH
Confidence 999999999999999988854 5799999999999999999999988877765432 2223455555566666788888
Q ss_pred HHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCE
Q 011079 349 NTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNV 428 (494)
Q Consensus 349 ~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~ 428 (494)
..++......++||||++++.++.+++.|...++.+..+||++++++|.++++.|++|+.+|||||+++++||||+++++
T Consensus 327 ~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~ 406 (475)
T PRK01297 327 YNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISH 406 (475)
T ss_pred HHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCE
Confidence 88888777789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCC-ccCCc-chhhh
Q 011079 429 VINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEI-KQIPP-HIDQA 490 (494)
Q Consensus 429 VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~~-~~~~~ 490 (494)
||++++|.|..+|+||+||+||.|..|.+++|++++|...+..+++.++.++ .++|+ +++..
T Consensus 407 VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (475)
T PRK01297 407 VINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKISCEMPPAELLKP 470 (475)
T ss_pred EEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCcccCCcHHHhhh
Confidence 9999999999999999999999999999999999999999999999999997 45444 54443
No 19
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.5e-60 Score=442.45 Aligned_cols=363 Identities=33% Similarity=0.547 Sum_probs=322.4
Q ss_pred cccccC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCC-----CceEEEE
Q 011079 121 EFEDYF--LKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN-----NVIQVVI 193 (494)
Q Consensus 121 ~~~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~-----~~~~~li 193 (494)
.|+++. |++.++.++...||...||+|..+||.++.++|+++.++||||||++|++|+++.+.... ....+||
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalI 84 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALI 84 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEE
Confidence 355553 569999999999999999999999999999999999999999999999999999984321 1236899
Q ss_pred EcCcHHHHHHHHHHHHHHhcc-CCcEEEEEECCCChHHHHHHhc-CCCeEEEEchHHHHHhHhcCCcc--ccccceEEec
Q 011079 194 LVPTRELALQTSQVCKELGKH-LNIQVMVTTGGTSLKDDIMRLY-QPVHLLVGTPGRILDLSKKGVCI--LKDCSMLVMD 269 (494)
Q Consensus 194 l~P~~~la~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~~~~~~~~--l~~~~~iViD 269 (494)
|+|||+|+.|+.+++..+... .++++..++||....++...+. +.+.|+|+|||+|.+++++.... +.+++++|+|
T Consensus 85 IsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLD 164 (567)
T KOG0345|consen 85 ISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLD 164 (567)
T ss_pred ecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEec
Confidence 999999999999999999887 6788999999999998887775 46779999999999999875433 4599999999
Q ss_pred ccccccCCCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccc---cccceeEEEEeehhhhHHH
Q 011079 270 EADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDEL---TLKGITQYYAFVEERQKVH 346 (494)
Q Consensus 270 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~~ 346 (494)
|||++++++|...+..++..+|..++.=++|||....+.++....+.+|..+.+.... ++..+..+|..++...|..
T Consensus 165 EADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~ 244 (567)
T KOG0345|consen 165 EADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLS 244 (567)
T ss_pred chHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888876544 5667888999999999999
Q ss_pred HHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHc--CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCC
Q 011079 347 CLNTLFSKLQINQSIIFCNSVNRVELLAKKITEL--GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQ 424 (494)
Q Consensus 347 ~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~ 424 (494)
.+..++......++|||.+|...++..+..|... +..++.+||.|.+..|..+++.|+.....||+|||++++|||||
T Consensus 245 ~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip 324 (567)
T KOG0345|consen 245 QLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIP 324 (567)
T ss_pred HHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCC
Confidence 9999999988999999999999999999988875 67899999999999999999999998889999999999999999
Q ss_pred CCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhC-CCCccCC
Q 011079 425 AVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELG-TEIKQIP 484 (494)
Q Consensus 425 ~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~-~~~~~~~ 484 (494)
+|++||+||+|.+++.|+||+||++|.|..|.+++|+.+.+.. +..+...-+ .+++++.
T Consensus 325 ~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~a-YveFl~i~~~v~le~~~ 384 (567)
T KOG0345|consen 325 GIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEA-YVEFLRIKGKVELERID 384 (567)
T ss_pred CceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHH-HHHHHHhcCccchhhhc
Confidence 9999999999999999999999999999999999999995544 444444443 3444443
No 20
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-60 Score=440.08 Aligned_cols=372 Identities=32% Similarity=0.536 Sum_probs=338.8
Q ss_pred ccCCCCccccc-CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhc------CCC
Q 011079 115 TATKGNEFEDY-FLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQ------DNN 187 (494)
Q Consensus 115 ~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~------~~~ 187 (494)
.+.+..+|++. .-.+++++++.+.||.+|+|+|.++||.+++|.|++.++.||+|||++|++|.+.++.. ...
T Consensus 214 IPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~ 293 (629)
T KOG0336|consen 214 IPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRN 293 (629)
T ss_pred CCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccC
Confidence 44555667665 45689999999999999999999999999999999999999999999999999877643 345
Q ss_pred ceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEE
Q 011079 188 VIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLV 267 (494)
Q Consensus 188 ~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iV 267 (494)
++.+|+++||++|+.|+.-.++.+. .-+....+++|+.+..+++..+..+.+|+++||++|.++...+..++.++.++|
T Consensus 294 ~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlV 372 (629)
T KOG0336|consen 294 GPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLV 372 (629)
T ss_pred CCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEE
Confidence 6789999999999999877776653 457888899999999999999999999999999999999998889999999999
Q ss_pred ecccccccCCCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEec--ccccccceeEEEEeehhhhHH
Q 011079 268 MDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLM--DELTLKGITQYYAFVEERQKV 345 (494)
Q Consensus 268 iDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~k~ 345 (494)
+||||+|++++|.+++.+++-..++++|+++.|||||..+..+...|+.+|.++.+. +-.....+.+......+..|.
T Consensus 373 lDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~ 452 (629)
T KOG0336|consen 373 LDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKL 452 (629)
T ss_pred ecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHH
Confidence 999999999999999999999999999999999999999999999999999776553 334445677777777788898
Q ss_pred HHHHHHHHhc-CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCC
Q 011079 346 HCLNTLFSKL-QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQ 424 (494)
Q Consensus 346 ~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~ 424 (494)
..+..++..+ +..++||||..+..++.|...|.-.|+..-.+||+-.+.+|+..++.|+.|+.+|||||+++++|+|++
T Consensus 453 ~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~ 532 (629)
T KOG0336|consen 453 EIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVP 532 (629)
T ss_pred HHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCch
Confidence 8888888776 456999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCccCCcch
Q 011079 425 AVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 487 (494)
Q Consensus 425 ~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~ 487 (494)
+++||++||+|.+++.|+||+||+||+|+.|.++.|++.+|-.....|.++|...-.++|.++
T Consensus 533 DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL 595 (629)
T KOG0336|consen 533 DITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDEL 595 (629)
T ss_pred hcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHH
Confidence 999999999999999999999999999999999999999999999999999999999999865
No 21
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-59 Score=448.84 Aligned_cols=364 Identities=34% Similarity=0.553 Sum_probs=334.2
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcC----CCceEEEEEc
Q 011079 120 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD----NNVIQVVILV 195 (494)
Q Consensus 120 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~----~~~~~~lil~ 195 (494)
..|.+++++...+++|++.+|..++.+|..+||..+.|+|++..+.||||||++|++|+++.+... ..|.-+|||+
T Consensus 69 ~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIIS 148 (758)
T KOG0343|consen 69 KKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIIS 148 (758)
T ss_pred hhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEec
Confidence 359999999999999999999999999999999999999999999999999999999999999753 3556799999
Q ss_pred CcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcC-CccccccceEEecccccc
Q 011079 196 PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG-VCILKDCSMLVMDEADKL 274 (494)
Q Consensus 196 P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~-~~~l~~~~~iViDEah~~ 274 (494)
|||+||.|+.+++.+++....++.+.+.||.....+..++ +...|+|||||+|+.+++.. .+...++.++|+||||+|
T Consensus 149 PTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~ 227 (758)
T KOG0343|consen 149 PTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRM 227 (758)
T ss_pred chHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHH
Confidence 9999999999999999999999999999999988777665 57899999999999988865 445688999999999999
Q ss_pred cCCCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecc---cccccceeEEEEeehhhhHHHHHHHH
Q 011079 275 LSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMD---ELTLKGITQYYAFVEERQKVHCLNTL 351 (494)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~k~~~l~~l 351 (494)
++++|...+..++..+|..+|.++||||-+..+.++++.-+.+|.++.+.. ...+.++.++|..++...|+..|...
T Consensus 228 LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sF 307 (758)
T KOG0343|consen 228 LDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSF 307 (758)
T ss_pred HHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988763 44567899999999999999999999
Q ss_pred HHhcCCCcEEEEecChhHHHHHHHHHHHc--CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEE
Q 011079 352 FSKLQINQSIIFCNSVNRVELLAKKITEL--GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVV 429 (494)
Q Consensus 352 l~~~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~V 429 (494)
+..+...++|||+.|.+++..++..+.++ |+.+..+||.|++..|..++..|......||+||++++||+|+|.|++|
T Consensus 308 I~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwV 387 (758)
T KOG0343|consen 308 IKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWV 387 (758)
T ss_pred HHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceE
Confidence 99999999999999999999999999987 7899999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCHHHHHHHhccccCCCCcceEEEEecccc-hHHHHHHHHHhCCCCccCCc
Q 011079 430 INFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYED-RFNLYRIEQELGTEIKQIPP 485 (494)
Q Consensus 430 I~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~~ 485 (494)
|.+|.|.++++|+||+||+.|.+..|.|++++++.+ ...+..|.+. .++++++-.
T Consensus 388 iQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k-~I~i~~i~i 443 (758)
T KOG0343|consen 388 IQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK-KIPIKEIKI 443 (758)
T ss_pred EEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc-CCCHHhhcc
Confidence 999999999999999999999999999999999998 4455555544 366655433
No 22
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=5.5e-58 Score=462.07 Aligned_cols=371 Identities=41% Similarity=0.709 Sum_probs=334.4
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcH
Q 011079 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (494)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (494)
..+|+++++++.+.+++.+.||..|+|+|.++|+.+++++++++++|||||||++|++|++..+.....+.++||++|++
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~ 106 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTR 106 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCH
Confidence 35799999999999999999999999999999999999999999999999999999999999887655566899999999
Q ss_pred HHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCC
Q 011079 199 ELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE 278 (494)
Q Consensus 199 ~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~ 278 (494)
+|+.|+.+.+..++...+..+....|+....++...+..+++|+|+||+++.+++.+....++++++||+||||++.+.+
T Consensus 107 ~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~ 186 (401)
T PTZ00424 107 ELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRG 186 (401)
T ss_pred HHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcc
Confidence 99999999999998888888888899988888777777888999999999999888777779999999999999999888
Q ss_pred cHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecc-cccccceeEEEEeehh-hhHHHHHHHHHHhcC
Q 011079 279 FQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMD-ELTLKGITQYYAFVEE-RQKVHCLNTLFSKLQ 356 (494)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~k~~~l~~ll~~~~ 356 (494)
|...+..++..++++.|++++|||++.....+...++.++..+.+.. .....++.+++...+. ..+...+..++....
T Consensus 187 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 266 (401)
T PTZ00424 187 FKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLT 266 (401)
T ss_pred hHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhcC
Confidence 99899999999999999999999999998888888888887655443 3334555555555443 346677777777777
Q ss_pred CCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCC
Q 011079 357 INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPK 436 (494)
Q Consensus 357 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~ 436 (494)
..++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++||++++|.
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~ 346 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPA 346 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCccCCcchhh
Q 011079 437 NSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQ 489 (494)
Q Consensus 437 s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 489 (494)
+..+|+||+||+||.|..|.|+.|+++++...+..+++.+...+++.++.+.+
T Consensus 347 s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 399 (401)
T PTZ00424 347 SPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPMEVAD 399 (401)
T ss_pred CHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCcchhh
Confidence 99999999999999999999999999999999999999999999998876543
No 23
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-59 Score=449.07 Aligned_cols=369 Identities=33% Similarity=0.543 Sum_probs=340.3
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCC----------CceE
Q 011079 121 EFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN----------NVIQ 190 (494)
Q Consensus 121 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~----------~~~~ 190 (494)
.|.+-.+.+.+..++...++..|+|+|+.+||.+..|++++++|+||||||.+|++|++.++...+ ..++
T Consensus 75 ~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~ 154 (482)
T KOG0335|consen 75 TFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPR 154 (482)
T ss_pred cccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCc
Confidence 677778889999999999999999999999999999999999999999999999999999987643 2479
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecc
Q 011079 191 VVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDE 270 (494)
Q Consensus 191 ~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDE 270 (494)
+||++|||+|+.|++..++++.-..++.....+|+.+...+......+|+|+|+|||+|.+++......|+++.++||||
T Consensus 155 ~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDE 234 (482)
T KOG0335|consen 155 ALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDE 234 (482)
T ss_pred eEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccC-CCcHHHHHHHHHHCCC----CCcEEEEEeecCcchHHHHHhhcCCC-eEEEe-cccccccceeEEEEeehhhh
Q 011079 271 ADKLLS-PEFQPSVEQLIRFLPA----NRQILMFSATFPVTVKDFKDKYLQKP-YVINL-MDELTLKGITQYYAFVEERQ 343 (494)
Q Consensus 271 ah~~~~-~~~~~~~~~~~~~~~~----~~~~i~~SATl~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~ 343 (494)
||+|++ .+|.+.+++++..... ..|.++||||.|..+..+...|+.+. ..+.+ .......++.+...++.+..
T Consensus 235 ADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~ 314 (482)
T KOG0335|consen 235 ADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEME 314 (482)
T ss_pred hHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecchh
Confidence 999999 9999999999987743 78999999999999999888888763 33332 23455678889999999999
Q ss_pred HHHHHHHHHHhcC----CC-----cEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEc
Q 011079 344 KVHCLNTLFSKLQ----IN-----QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 414 (494)
Q Consensus 344 k~~~l~~ll~~~~----~~-----~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT 414 (494)
|...|.+++.... .+ +++|||.+++.+..++..|...++.+..+||...+.+|.+.++.|++|+..+||||
T Consensus 315 kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT 394 (482)
T KOG0335|consen 315 KRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVAT 394 (482)
T ss_pred hHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEe
Confidence 9888888887543 33 79999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCccCCcchhh
Q 011079 415 DLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQ 489 (494)
Q Consensus 415 ~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 489 (494)
+++++|+|||+|++||+||+|.+..+|+||+||+||.|..|.++.|++..+.-....|.+.+...-.++|.++.+
T Consensus 395 ~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~vP~wl~~ 469 (482)
T KOG0335|consen 395 NVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQEVPQWLSE 469 (482)
T ss_pred hhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhcccCcHHHHh
Confidence 999999999999999999999999999999999999999999999999888888999999999999999999987
No 24
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.3e-57 Score=424.68 Aligned_cols=377 Identities=31% Similarity=0.481 Sum_probs=342.6
Q ss_pred ccccCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhc-----CCC
Q 011079 113 DVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQ-----DNN 187 (494)
Q Consensus 113 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~-----~~~ 187 (494)
..++.+..+|+.++++..|..++.+..|.+|+|+|.+++|..+.|++++-.|.||||||.+|+.|++.++.. .+.
T Consensus 216 ~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~ 295 (731)
T KOG0339|consen 216 SSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGE 295 (731)
T ss_pred CCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCC
Confidence 345667788999999999999999999999999999999999999999999999999999999999988754 367
Q ss_pred ceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEE
Q 011079 188 VIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLV 267 (494)
Q Consensus 188 ~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iV 267 (494)
++..||+||||+||.|+..++++|++..++++++++||.+..++...+..++.|||||||+|++++.....++.+++++|
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV 375 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLV 375 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred ecccccccCCCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecc-cccccceeEEEEeehh-hhHH
Q 011079 268 MDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMD-ELTLKGITQYYAFVEE-RQKV 345 (494)
Q Consensus 268 iDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~k~ 345 (494)
|||+++|.+.+|.++++.|...+.+++|.|+||||++..++.+.+.++.+|..+...+ ...-..+++.+..++. ..|+
T Consensus 376 ~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl 455 (731)
T KOG0339|consen 376 LDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKL 455 (731)
T ss_pred EechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHH
Confidence 9999999999999999999999999999999999999999999999999996654431 1222446666555544 4455
Q ss_pred HHHH-HHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCC
Q 011079 346 HCLN-TLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQ 424 (494)
Q Consensus 346 ~~l~-~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~ 424 (494)
.-|. .|......|++|||++-+..+++++..|+-.++++..+||++.+.+|.+++..|+.+...|||||+++++|+||+
T Consensus 456 ~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~ 535 (731)
T KOG0339|consen 456 NWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIP 535 (731)
T ss_pred HHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCcc
Confidence 5444 444445678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCccCCcchhh
Q 011079 425 AVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQ 489 (494)
Q Consensus 425 ~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 489 (494)
++..||+||+-.+++.|.||+||+||+|..|.+|.|+++.|....-.|-+.|.-.-..+|+++++
T Consensus 536 ~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~d 600 (731)
T KOG0339|consen 536 SIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMD 600 (731)
T ss_pred ccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccccCChHHHH
Confidence 99999999999999999999999999999999999999999998888888888888888887664
No 25
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-56 Score=417.83 Aligned_cols=360 Identities=33% Similarity=0.514 Sum_probs=324.3
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhc------CCCceEEEE
Q 011079 120 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQ------DNNVIQVVI 193 (494)
Q Consensus 120 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~------~~~~~~~li 193 (494)
.+|++++|++.+++++.+.||..|+-+|+.+||.+++|+|+++.|.||||||.+|++|+++.+.. ...++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 57999999999999999999999999999999999999999999999999999999999999864 345678999
Q ss_pred EcCcHHHHHHHHHHHHHHhccCC--cEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCC-ccccccceEEecc
Q 011079 194 LVPTRELALQTSQVCKELGKHLN--IQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGV-CILKDCSMLVMDE 270 (494)
Q Consensus 194 l~P~~~la~q~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~-~~l~~~~~iViDE 270 (494)
++||++|+.|++.++..+...++ +++..+..+.+.......+...++|+|+||+.++.++..+. ..+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999998877664 44444444455555556777899999999999999988876 6688999999999
Q ss_pred cccccCCCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccc--cccceeEEEEeehhhhHHHHH
Q 011079 271 ADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDEL--TLKGITQYYAFVEERQKVHCL 348 (494)
Q Consensus 271 ah~~~~~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~l 348 (494)
||.++.-+|...++.+...+|+..|.++||||+..++..+...++.+|.++.+.+.- ....+.+++..+.+.+|...+
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflll 258 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLL 258 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHH
Confidence 999999999999999999999999999999999999999999999999998876543 346788999999999998888
Q ss_pred HHHHHh-cCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCc-----------
Q 011079 349 NTLFSK-LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL----------- 416 (494)
Q Consensus 349 ~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~----------- 416 (494)
..+++- .-.|++|||+|+.+.|..+.-.|.+.|++.+.++|.||...|--+++.|..|.+++|||||.
T Consensus 259 yallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~ 338 (569)
T KOG0346|consen 259 YALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEV 338 (569)
T ss_pred HHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccc
Confidence 888764 45789999999999999999999999999999999999999999999999999999999991
Q ss_pred ------------------------ccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHH
Q 011079 417 ------------------------FTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRI 472 (494)
Q Consensus 417 ------------------------~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l 472 (494)
+.||||+.+|..|||||+|.+...|+||+||++|++++|.++.|+.+.+.+....+
T Consensus 339 kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~l 418 (569)
T KOG0346|consen 339 KGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESL 418 (569)
T ss_pred cccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHH
Confidence 67999999999999999999999999999999999999999999999998877777
Q ss_pred HHHhCCC
Q 011079 473 EQELGTE 479 (494)
Q Consensus 473 ~~~~~~~ 479 (494)
+..+...
T Consensus 419 e~~~~d~ 425 (569)
T KOG0346|consen 419 ESILKDE 425 (569)
T ss_pred HHHHhhH
Confidence 7766553
No 26
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.3e-58 Score=436.75 Aligned_cols=376 Identities=30% Similarity=0.475 Sum_probs=305.5
Q ss_pred cCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CcEEEEccCCCchhHHhHHHHHHhhhcCC--------
Q 011079 116 ATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTG-SDILARAKNGTGKTAAFCIPALEKIDQDN-------- 186 (494)
Q Consensus 116 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~ii~~~TGsGKT~~~~~~~l~~l~~~~-------- 186 (494)
......|..++++.+++.+|...||..|+++|..+||++..| .|++..|+||||||++|-+|+++.+.+..
T Consensus 177 ~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~ 256 (731)
T KOG0347|consen 177 KVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSN 256 (731)
T ss_pred ccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhh
Confidence 344455888899999999999999999999999999999999 68999999999999999999999664321
Q ss_pred -----CceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCc---
Q 011079 187 -----NVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVC--- 258 (494)
Q Consensus 187 -----~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~--- 258 (494)
..+.+||++|||+||.|+.+.+..++...++.+..++||-....+.+.+...++|+|+|||+|+.++..+..
T Consensus 257 ~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~ 336 (731)
T KOG0347|consen 257 TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLG 336 (731)
T ss_pred HHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhh
Confidence 222489999999999999999999999999999999999999999999999999999999999998886533
Q ss_pred cccccceEEecccccccCCCcHHHHHHHHHHCC-----CCCcEEEEEeecCcc---------------------hHHHHH
Q 011079 259 ILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLP-----ANRQILMFSATFPVT---------------------VKDFKD 312 (494)
Q Consensus 259 ~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~-----~~~~~i~~SATl~~~---------------------~~~~~~ 312 (494)
.+++++++|+||+|+|+..+++..+.+++..+. ..+|.+++|||++-. +..+..
T Consensus 337 ~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk 416 (731)
T KOG0347|consen 337 NFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMK 416 (731)
T ss_pred hhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHH
Confidence 467889999999999999999999999988774 357999999997421 111221
Q ss_pred --hhcCCCeEEEecccc-cccceeEEEEeehhhhHHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEcc
Q 011079 313 --KYLQKPYVINLMDEL-TLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHA 389 (494)
Q Consensus 313 --~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~ 389 (494)
.+..+|.++.+.... ....+......++...|.-.|..++. .-+|++|||||+++.+..|+-.|..+++..+++|+
T Consensus 417 ~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~-ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA 495 (731)
T KOG0347|consen 417 KIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLT-RYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHA 495 (731)
T ss_pred HhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEe-ecCCceEEEechHHHHHHHHHHHhhcCCCCchhhH
Confidence 133455555543211 11111111111111111111111111 24689999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHH
Q 011079 390 KMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNL 469 (494)
Q Consensus 390 ~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~ 469 (494)
.|.+.+|-+.+++|++..-.|||||++|+||+|||+|.|||||..|.+.+.|+||.||+.|++..|..+.|+.|.+...+
T Consensus 496 ~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~ 575 (731)
T KOG0347|consen 496 SMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPL 575 (731)
T ss_pred HHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhCC----CCccCCcchhhhhh
Q 011079 470 YRIEQELGT----EIKQIPPHIDQAIY 492 (494)
Q Consensus 470 ~~l~~~~~~----~~~~~~~~~~~~~~ 492 (494)
.+|..-|.+ ++-++...+++.+.
T Consensus 576 ~KL~ktL~k~~dlpifPv~~~~m~~lk 602 (731)
T KOG0347|consen 576 KKLCKTLKKKEDLPIFPVETDIMDALK 602 (731)
T ss_pred HHHHHHHhhccCCCceeccHHHHHHHH
Confidence 888877765 44444445555544
No 27
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=5.3e-58 Score=420.11 Aligned_cols=376 Identities=28% Similarity=0.517 Sum_probs=330.7
Q ss_pred cccccCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhc-------
Q 011079 112 EDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQ------- 184 (494)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~------- 184 (494)
.+..+.+..+|.+..++..+++.|++.|+..|+|+|.+.+|.+++|+|.|..+-||||||++|.+|++....+
T Consensus 162 Gd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf 241 (610)
T KOG0341|consen 162 GDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPF 241 (610)
T ss_pred CCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCcc
Confidence 3455677789999999999999999999999999999999999999999999999999999999999866533
Q ss_pred -CCCceEEEEEcCcHHHHHHHHHHHHHHhccC------CcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCC
Q 011079 185 -DNNVIQVVILVPTRELALQTSQVCKELGKHL------NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGV 257 (494)
Q Consensus 185 -~~~~~~~lil~P~~~la~q~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~ 257 (494)
.+.++..||+||+|+||.|..+.+..+...+ .++.....||.+..++......+.+|+|+|||+|.+++.+..
T Consensus 242 ~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~ 321 (610)
T KOG0341|consen 242 ARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKI 321 (610)
T ss_pred ccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhh
Confidence 3567789999999999999988877765433 356677889999999999999999999999999999999998
Q ss_pred ccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEeccc-ccccceeEEE
Q 011079 258 CILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDE-LTLKGITQYY 336 (494)
Q Consensus 258 ~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 336 (494)
..|.-+.++++||||+|.+.+|...++.++..+...+|.++||||+|..+..|++.-+-.|..+++... ...-++.+..
T Consensus 322 ~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQev 401 (610)
T KOG0341|consen 322 MSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEV 401 (610)
T ss_pred ccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHH
Confidence 889999999999999999999999999999999999999999999999999999999999988887532 2223444455
Q ss_pred EeehhhhHHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCc
Q 011079 337 AFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL 416 (494)
Q Consensus 337 ~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~ 416 (494)
.++....|+-.|...+++. .-++||||..+.+++.++++|--.|+.++.+||+-++++|...++.|+.|+.+|||||++
T Consensus 402 EyVkqEaKiVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDV 480 (610)
T KOG0341|consen 402 EYVKQEAKIVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDV 480 (610)
T ss_pred HHHHhhhhhhhHHHHhccC-CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecc
Confidence 5666677877788877664 358999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEeccc-chHHHHHHHHHhCCCCccCCcchh
Q 011079 417 FTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYE-DRFNLYRIEQELGTEIKQIPPHID 488 (494)
Q Consensus 417 ~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~-~~~~~~~l~~~~~~~~~~~~~~~~ 488 (494)
++.|+|+|++.||||||+|..+++|+||+||+||.|+.|.+..|++.+ +...+-.|...|...-.++|+.+.
T Consensus 481 ASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~ 553 (610)
T KOG0341|consen 481 ASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVPPVLA 553 (610)
T ss_pred hhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCCHHHH
Confidence 999999999999999999999999999999999999999999999965 444555555556555566666544
No 28
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.9e-56 Score=408.47 Aligned_cols=368 Identities=40% Similarity=0.725 Sum_probs=346.4
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHH
Q 011079 121 EFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTREL 200 (494)
Q Consensus 121 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~l 200 (494)
+|+++.|+++|++.++..||++|+.+|..||..+..|.|+++.+.+|+|||.+|..++++.+.-......+++++|+++|
T Consensus 27 sfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreL 106 (397)
T KOG0327|consen 27 SFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTREL 106 (397)
T ss_pred hhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHH
Confidence 79999999999999999999999999999999999999999999999999999999999998877777789999999999
Q ss_pred HHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHh-cCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCc
Q 011079 201 ALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL-YQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEF 279 (494)
Q Consensus 201 a~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~ 279 (494)
|.|+..+...++...+.++..+.|+.....+...+ ...++|+++|||++.++++...+....+.++|+||+|+|+..+|
T Consensus 107 a~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gf 186 (397)
T KOG0327|consen 107 AQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGF 186 (397)
T ss_pred HHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccch
Confidence 99999999999999999999999999888554444 34589999999999999998877778899999999999999999
Q ss_pred HHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEec-ccccccceeEEEEeehhhhHHHHHHHHHHhcCCC
Q 011079 280 QPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLM-DELTLKGITQYYAFVEERQKVHCLNTLFSKLQIN 358 (494)
Q Consensus 280 ~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~ 358 (494)
...+..+...+|++.|++++|||+|.++....+.|+.+|..+.+. .+.+..++.+++.......|+..|..++. ...
T Consensus 187 kdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~--~~~ 264 (397)
T KOG0327|consen 187 KDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYR--RVT 264 (397)
T ss_pred HHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHHHHH--hhh
Confidence 999999999999999999999999999999999999999877665 45677889999999888889999999998 567
Q ss_pred cEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCCCH
Q 011079 359 QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNS 438 (494)
Q Consensus 359 ~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~ 438 (494)
..+|||++.+.+..+...|...++.+..+|+.|.+.+|..+++.|+.|..+|||+|+.+++|+|+..+..||+|+.|...
T Consensus 265 q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~ 344 (397)
T KOG0327|consen 265 QAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARK 344 (397)
T ss_pred cceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccch
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCccCCcchhhh
Q 011079 439 ETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQA 490 (494)
Q Consensus 439 ~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 490 (494)
++|+||+||+||.|.+|.++.++++.|...+..++++++++++++|.++.+.
T Consensus 345 ~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~~l 396 (397)
T KOG0327|consen 345 ENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFADL 396 (397)
T ss_pred hhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchhhc
Confidence 9999999999999999999999999999999999999999999999987653
No 29
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-55 Score=403.69 Aligned_cols=369 Identities=37% Similarity=0.616 Sum_probs=330.4
Q ss_pred cccCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEE
Q 011079 114 VTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTG--SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQV 191 (494)
Q Consensus 114 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~ 191 (494)
++.....+|+++.|.++++++++.++|..|+.+|+.|+|.++.. +++|..+..|+|||.||.+.+|.++...-..+.+
T Consensus 84 sPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~ 163 (477)
T KOG0332|consen 84 SPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQC 163 (477)
T ss_pred CCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCc
Confidence 34556678999999999999999999999999999999999987 6799999999999999999999999988888899
Q ss_pred EEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhc-CCccccccceEEecc
Q 011079 192 VILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKK-GVCILKDCSMLVMDE 270 (494)
Q Consensus 192 lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~-~~~~l~~~~~iViDE 270 (494)
+.|+|+|+||.|..+++.++++..++...+...+.....- -.-..+|+++|||.+.++... ...++..+.++|+||
T Consensus 164 iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG---~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDE 240 (477)
T KOG0332|consen 164 ICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG---NKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDE 240 (477)
T ss_pred eeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC---CcchhheeeCCCccHHHHHHHHHhhChhhceEEEecc
Confidence 9999999999999999999999988888887777632211 011247999999999998776 566789999999999
Q ss_pred cccccC-CCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEec-ccccccceeEEEEeehh-hhHHHH
Q 011079 271 ADKLLS-PEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLM-DELTLKGITQYYAFVEE-RQKVHC 347 (494)
Q Consensus 271 ah~~~~-~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~k~~~ 347 (494)
||.|++ .+|+..-..+.+.+|++.|++++|||+...+..|+.+++.++..+.+. ++....++.++|..+.. ..|.+.
T Consensus 241 AD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~ 320 (477)
T KOG0332|consen 241 ADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQA 320 (477)
T ss_pred hhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHH
Confidence 998765 678988889999999999999999999999999999999999888775 56778889999888765 469999
Q ss_pred HHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCC
Q 011079 348 LNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVN 427 (494)
Q Consensus 348 l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~ 427 (494)
|.++......+..||||.++..+..++..|.+.|+.+..+||+|.-++|..+++.|+.|..+|||+|++++||||++.|.
T Consensus 321 l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs 400 (477)
T KOG0332|consen 321 LVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVS 400 (477)
T ss_pred HHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEE
Confidence 99999888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCC------CHHHHHHHhccccCCCCcceEEEEecccc-hHHHHHHHHHhCCCCccCCc
Q 011079 428 VVINFDFPK------NSETYLHRVGRSGRFGHLGLAVNLITYED-RFNLYRIEQELGTEIKQIPP 485 (494)
Q Consensus 428 ~VI~~~~p~------s~~~~~Qr~GRagR~g~~g~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~~ 485 (494)
+|||||+|. +.++|+||+||+||.|+.|.++.|++..+ ...+..|++.++..++.+.+
T Consensus 401 ~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~ 465 (477)
T KOG0332|consen 401 VVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDP 465 (477)
T ss_pred EEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCC
Confidence 999999997 68899999999999999999999998765 55667999999776655544
No 30
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-55 Score=417.17 Aligned_cols=358 Identities=29% Similarity=0.471 Sum_probs=309.2
Q ss_pred CCCCcccccCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhc------CCCce
Q 011079 117 TKGNEFEDYFLKRELLMGIFE-KGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQ------DNNVI 189 (494)
Q Consensus 117 ~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~------~~~~~ 189 (494)
.....|..++|++.+...|.. +++..|+.+|.++||.+++|+|++|.++||||||++|++|+++.+.. ...|+
T Consensus 133 fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~ 212 (708)
T KOG0348|consen 133 FTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGP 212 (708)
T ss_pred cccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCc
Confidence 344679999999999999975 59999999999999999999999999999999999999999999864 34567
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhccCCc-EEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcC-CccccccceEE
Q 011079 190 QVVILVPTRELALQTSQVCKELGKHLNI-QVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG-VCILKDCSMLV 267 (494)
Q Consensus 190 ~~lil~P~~~la~q~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~-~~~l~~~~~iV 267 (494)
-+||++|||+|+.|+++++.++...+.. .-+++.||.....+..++.+++.|+|+|||+|++++.+- .+.++.+.+||
T Consensus 213 ~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlV 292 (708)
T KOG0348|consen 213 YALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLV 292 (708)
T ss_pred eEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEE
Confidence 8999999999999999999999887653 346789999999999999999999999999999988753 55678899999
Q ss_pred ecccccccCCCcHHHHHHHHHHCC-------------CCCcEEEEEeecCcchHHHHHhhcCCCeEEEecc---------
Q 011079 268 MDEADKLLSPEFQPSVEQLIRFLP-------------ANRQILMFSATFPVTVKDFKDKYLQKPYVINLMD--------- 325 (494)
Q Consensus 268 iDEah~~~~~~~~~~~~~~~~~~~-------------~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~--------- 325 (494)
+||+|++++.+|...+..|+..+. ...|-+++|||++..+..+...-+.+|..+.+..
T Consensus 293 lDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~ 372 (708)
T KOG0348|consen 293 LDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKD 372 (708)
T ss_pred ecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcch
Confidence 999999999999999999987762 2367899999999999999999999998887321
Q ss_pred -----------------cccccceeEEEEeehhhhHHHHHHHHHHh----cCCCcEEEEecChhHHHHHHHHHHHc----
Q 011079 326 -----------------ELTLKGITQYYAFVEERQKVHCLNTLFSK----LQINQSIIFCNSVNRVELLAKKITEL---- 380 (494)
Q Consensus 326 -----------------~~~~~~~~~~~~~~~~~~k~~~l~~ll~~----~~~~~~lVF~~~~~~~~~l~~~L~~~---- 380 (494)
...+..+.+.|..++...++-.|..++.. ....++|||+.+.+.++.=+++|...
T Consensus 373 ~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~ 452 (708)
T KOG0348|consen 373 KAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSH 452 (708)
T ss_pred hhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcc
Confidence 11123455677777777777666666544 35568999999999999888777652
Q ss_pred ------------------CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHH
Q 011079 381 ------------------GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYL 442 (494)
Q Consensus 381 ------------------~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~ 442 (494)
+.+++.+||+|.+++|..+|..|......||+|||+++||+|+|+|..||.||.|.+.++|+
T Consensus 453 ~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adyl 532 (708)
T KOG0348|consen 453 LEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYL 532 (708)
T ss_pred cccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHH
Confidence 44688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccCCCCcceEEEEecccchHHHHHHHH
Q 011079 443 HRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 474 (494)
Q Consensus 443 Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~ 474 (494)
||+||+.|+|..|.+++|..|.+...+..+..
T Consensus 533 HRvGRTARaG~kG~alLfL~P~Eaey~~~l~~ 564 (708)
T KOG0348|consen 533 HRVGRTARAGEKGEALLFLLPSEAEYVNYLKK 564 (708)
T ss_pred HHhhhhhhccCCCceEEEecccHHHHHHHHHh
Confidence 99999999999999999999999885555543
No 31
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=7.5e-54 Score=415.19 Aligned_cols=374 Identities=35% Similarity=0.599 Sum_probs=336.2
Q ss_pred cccccCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEE
Q 011079 112 EDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQV 191 (494)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~ 191 (494)
.++.......|+.+.|..+++..|+.++|..|+++|..|||+++.+.|+||.+..|+|||++|...+++.+......+..
T Consensus 17 ~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~ 96 (980)
T KOG4284|consen 17 IDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQK 96 (980)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCccee
Confidence 34455556679999999999999999999999999999999999999999999999999999999999999888888899
Q ss_pred EEEcCcHHHHHHHHHHHHHHhccC-CcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecc
Q 011079 192 VILVPTRELALQTSQVCKELGKHL-NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDE 270 (494)
Q Consensus 192 lil~P~~~la~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDE 270 (494)
+||+|||++|.|+.+++..++..+ |.++.+++||+....+..++ +.++|+|+|||++.++...+.++..+++++|+||
T Consensus 97 ~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl-k~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDE 175 (980)
T KOG4284|consen 97 VIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL-KQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDE 175 (980)
T ss_pred EEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh-hhceEEecCchHHHHHHHhcCCCccceeEEEecc
Confidence 999999999999999999998754 89999999999999887776 5689999999999999999999999999999999
Q ss_pred cccccC-CCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecc-cccccceeEEEEeehh-------
Q 011079 271 ADKLLS-PEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMD-ELTLKGITQYYAFVEE------- 341 (494)
Q Consensus 271 ah~~~~-~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------- 341 (494)
||.+.+ ..|+..+..++..+|..+|++++|||.|..+.+.+.+|+.+|.++.... +...-++.+++.....
T Consensus 176 ADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsvee 255 (980)
T KOG4284|consen 176 ADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEE 255 (980)
T ss_pred HHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHH
Confidence 998877 7899999999999999999999999999999999999999999888764 4555678888776543
Q ss_pred -hhHHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCccccc
Q 011079 342 -RQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRG 420 (494)
Q Consensus 342 -~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~G 420 (494)
..|+..|..++...+....||||+....|+-++..|...|+++.++.|.|++.+|..+++.+++-.++|||+|+..+||
T Consensus 256 mrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRG 335 (980)
T KOG4284|consen 256 MRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARG 335 (980)
T ss_pred HHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhcc
Confidence 3488899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccch-HH----HHHHHHHhCC---CCccCCcc
Q 011079 421 IDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDR-FN----LYRIEQELGT---EIKQIPPH 486 (494)
Q Consensus 421 idi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~-~~----~~~l~~~~~~---~~~~~~~~ 486 (494)
||-+++++|||.|.|.+..+|.||+|||||.|..|.++.|+...+. .. .+++...... +.+++|-.
T Consensus 336 IDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m~~ria~~~~~~~~p~~p~P~~ 409 (980)
T KOG4284|consen 336 IDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAMAYRIAVTVKRVVEPVHPLPGD 409 (980)
T ss_pred CCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHHHHHHhhhheeeeccCCCCCcc
Confidence 9999999999999999999999999999999999999999986544 22 2445544443 33445543
No 32
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=3.6e-52 Score=441.09 Aligned_cols=350 Identities=19% Similarity=0.277 Sum_probs=282.8
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHH
Q 011079 126 FLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTS 205 (494)
Q Consensus 126 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~ 205 (494)
.+++.+.+.+.+.||..|+++|.++|+.+++|+|+++.+|||||||++|++|+++.+... .+.++|||+||++|+.|+.
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~-~~~~aL~l~PtraLa~q~~ 98 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD-PRATALYLAPTKALAADQL 98 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC-CCcEEEEEcChHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999998764 3568999999999999999
Q ss_pred HHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHh----cCCccccccceEEecccccccCCCcHH
Q 011079 206 QVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSK----KGVCILKDCSMLVMDEADKLLSPEFQP 281 (494)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~----~~~~~l~~~~~iViDEah~~~~~~~~~ 281 (494)
+.++++. ..++++..+.|+.... +...+...++|+|+||++|...+. ++...++++++|||||||++.+ .|+.
T Consensus 99 ~~l~~l~-~~~i~v~~~~Gdt~~~-~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~ 175 (742)
T TIGR03817 99 RAVRELT-LRGVRPATYDGDTPTE-ERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGS 175 (742)
T ss_pred HHHHHhc-cCCeEEEEEeCCCCHH-HHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHH
Confidence 9999987 4578888888887754 435556678999999999864222 1223478999999999999865 4776
Q ss_pred HHHHHHHH-------CCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeeh--------------
Q 011079 282 SVEQLIRF-------LPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVE-------------- 340 (494)
Q Consensus 282 ~~~~~~~~-------~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 340 (494)
.+..++++ .+.++|++++|||++... ++...++..+..+ +..+...........+.+
T Consensus 176 ~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~-~~~~~l~g~~~~~-i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r 253 (742)
T TIGR03817 176 HVALVLRRLRRLCARYGASPVFVLASATTADPA-AAASRLIGAPVVA-VTEDGSPRGARTVALWEPPLTELTGENGAPVR 253 (742)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHH-HHHHHHcCCCeEE-ECCCCCCcCceEEEEecCCccccccccccccc
Confidence 66555444 356789999999998664 4566777766443 222211111122211111
Q ss_pred ---hhhHHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHc--------CCcEEEEccCCCHHHHHHHHHHhhcCCcc
Q 011079 341 ---ERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITEL--------GYSCFYIHAKMLQDHRNRVFHDFRNGACR 409 (494)
Q Consensus 341 ---~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~--------~~~~~~~~~~~~~~~r~~i~~~f~~g~~~ 409 (494)
...+...+..++.. ..++||||++++.++.++..|.+. +..+..+||++++++|.++++.|++|+.+
T Consensus 254 ~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~ 331 (742)
T TIGR03817 254 RSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELL 331 (742)
T ss_pred cchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCce
Confidence 12344555555543 579999999999999999988764 56788999999999999999999999999
Q ss_pred EEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEec--ccchHHHHHHHHHhCCCCccC
Q 011079 410 NLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLIT--YEDRFNLYRIEQELGTEIKQI 483 (494)
Q Consensus 410 vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~--~~~~~~~~~l~~~~~~~~~~~ 483 (494)
+||||+++++||||+++++||++++|.+..+|+||+|||||.|+.|.++++.+ +.|...+..+++.++.++++.
T Consensus 332 vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e~~ 407 (742)
T TIGR03817 332 GVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVEAT 407 (742)
T ss_pred EEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCccc
Confidence 99999999999999999999999999999999999999999999999999986 457777788888898887764
No 33
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.8e-53 Score=432.59 Aligned_cols=370 Identities=32% Similarity=0.560 Sum_probs=336.3
Q ss_pred cCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhc-----CCCceE
Q 011079 116 ATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQ-----DNNVIQ 190 (494)
Q Consensus 116 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~-----~~~~~~ 190 (494)
+.+..+|...++...++.-+++.||..|+++|.+|||+|+.|+|+|.+|.||||||++|++|++.+... .+.++.
T Consensus 361 pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi 440 (997)
T KOG0334|consen 361 PKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPI 440 (997)
T ss_pred CcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCce
Confidence 345567899999999999999999999999999999999999999999999999999999999977643 356889
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCcc---ccccceEE
Q 011079 191 VVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCI---LKDCSMLV 267 (494)
Q Consensus 191 ~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~---l~~~~~iV 267 (494)
+||+||||+|+.|+.++++.|...+++.+++.+|+....+++..+..++.|+|||||++.+++-.+... +.++.++|
T Consensus 441 ~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv 520 (997)
T KOG0334|consen 441 ALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLV 520 (997)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceee
Confidence 999999999999999999999999999999999999999999999999999999999999977654333 45556999
Q ss_pred ecccccccCCCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEeccc-ccccceeEEEEeeh-hhhHH
Q 011079 268 MDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDE-LTLKGITQYYAFVE-ERQKV 345 (494)
Q Consensus 268 iDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~k~ 345 (494)
+||||+|.+.+|.+.+..|+..+++.+|.+++|||+|..+..+....+..|..+.+... .....+.+.+..+. +..|+
T Consensus 521 ~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf 600 (997)
T KOG0334|consen 521 LDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKF 600 (997)
T ss_pred echhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHH
Confidence 99999999999999999999999999999999999999999999999998877665543 33356777777777 77888
Q ss_pred HHHHHHHHhc-CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCC
Q 011079 346 HCLNTLFSKL-QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQ 424 (494)
Q Consensus 346 ~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~ 424 (494)
..|..++... ..+++||||..++.|..+.+.|.+.++.+..+||+.++.+|..+++.|++|.+.+||||+++++|+|++
T Consensus 601 ~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~ 680 (997)
T KOG0334|consen 601 LKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVK 680 (997)
T ss_pred HHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccc
Confidence 8888888664 578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCccCCc
Q 011079 425 AVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPP 485 (494)
Q Consensus 425 ~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 485 (494)
.+..|||||+|..+++|+||+||+||+|+.|.|+.|+++++......|.+.+...-.++|.
T Consensus 681 ~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~ 741 (997)
T KOG0334|consen 681 ELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVPK 741 (997)
T ss_pred cceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCch
Confidence 9999999999999999999999999999999999999999999999999999777677773
No 34
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-53 Score=391.85 Aligned_cols=367 Identities=33% Similarity=0.531 Sum_probs=340.0
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCC-CceEEEEEcCc
Q 011079 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN-NVIQVVILVPT 197 (494)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~-~~~~~lil~P~ 197 (494)
...|+.++|+..+++++.+.||+.|+|+|++.||.++++++++..+-||||||.||++|+++.+.... .+.+++|+.|+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilspt 99 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPT 99 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCc
Confidence 46799999999999999999999999999999999999999999999999999999999999997643 45699999999
Q ss_pred HHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCC
Q 011079 198 RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSP 277 (494)
Q Consensus 198 ~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~ 277 (494)
++|+.|...+.++++...+....+++|+....++...+...++||++||++++++.-...+.|+.+.+||+||+|++..+
T Consensus 100 reLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfem 179 (529)
T KOG0337|consen 100 RELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEM 179 (529)
T ss_pred HHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhh
Confidence 99999999999999999999999999999999999999989999999999999877776678999999999999999999
Q ss_pred CcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccccc-cceeEEEEeehhhhHHHHHHHHHHhcC
Q 011079 278 EFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTL-KGITQYYAFVEERQKVHCLNTLFSKLQ 356 (494)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~l~~ll~~~~ 356 (494)
+|.+.+.+++.+++.+.|.++||||+|..+.++.+.-+.+|..+.+..+... ..+...+..+....|...|..++....
T Consensus 180 gfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~ 259 (529)
T KOG0337|consen 180 GFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGRI 259 (529)
T ss_pred hhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999988886644433 345556677778888888888887653
Q ss_pred -CCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCC
Q 011079 357 -INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFP 435 (494)
Q Consensus 357 -~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p 435 (494)
...++|||.+..+++.+...|...|+.+..++|.|++..|..-+..|..++..+||.|+++++|+|||..+.||+||+|
T Consensus 260 ~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p 339 (529)
T KOG0337|consen 260 KDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFP 339 (529)
T ss_pred cccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCC
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCccCCc
Q 011079 436 KNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPP 485 (494)
Q Consensus 436 ~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 485 (494)
.+..-|.||+||+.|+|..|.+|.|+.+.+.+.+-.|..+++.++...+.
T Consensus 340 ~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~~~~ 389 (529)
T KOG0337|consen 340 PDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIFAIS 389 (529)
T ss_pred CCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCceeeccc
Confidence 99999999999999999999999999999999999999999998865544
No 35
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=4.1e-51 Score=429.90 Aligned_cols=338 Identities=21% Similarity=0.278 Sum_probs=266.0
Q ss_pred cCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHH
Q 011079 125 YFLKRELLMGIFE-KGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQ 203 (494)
Q Consensus 125 ~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q 203 (494)
++....+...++. .|+..++|+|.++|+.++.|+|+|+++|||+|||+||++|++.. ...+|||+|+++|+.+
T Consensus 442 fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISPLiSLmqD 515 (1195)
T PLN03137 442 FPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQD 515 (1195)
T ss_pred CCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeCHHHHHHH
Confidence 4555556555554 58999999999999999999999999999999999999999864 2378999999999976
Q ss_pred HHHHHHHHhccCCcEEEEEECCCChHHHHHHhc------CCCeEEEEchHHHHH---hHhc--CCccccccceEEecccc
Q 011079 204 TSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLY------QPVHLLVGTPGRILD---LSKK--GVCILKDCSMLVMDEAD 272 (494)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~Ilv~T~~~l~~---~~~~--~~~~l~~~~~iViDEah 272 (494)
+...+.. .++....+.++....++...+. ...+|+|+||++|.. ++.. .......+++|||||||
T Consensus 516 QV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAH 591 (1195)
T PLN03137 516 QIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAH 591 (1195)
T ss_pred HHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcch
Confidence 5544443 4688888888887665543322 467999999999852 1211 11113458999999999
Q ss_pred cccCCC--cHHHHHHH--HHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeehhhh-HHHH
Q 011079 273 KLLSPE--FQPSVEQL--IRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQ-KVHC 347 (494)
Q Consensus 273 ~~~~~~--~~~~~~~~--~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~ 347 (494)
++++++ |++.+..+ +....+..+++++|||++..+...+...+.....+.+......+++. +....... ....
T Consensus 592 cVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~--y~Vv~k~kk~le~ 669 (1195)
T PLN03137 592 CVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLW--YSVVPKTKKCLED 669 (1195)
T ss_pred hhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceE--EEEeccchhHHHH
Confidence 999875 88888764 34444578899999999988888766665544333344444444442 33333222 2344
Q ss_pred HHHHHHh-cCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCC
Q 011079 348 LNTLFSK-LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAV 426 (494)
Q Consensus 348 l~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v 426 (494)
+..++.. ......||||.++..++.++..|.+.|+.+.+|||+|++++|..+++.|..|+.+|||||+++++|||+|+|
T Consensus 670 L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDV 749 (1195)
T PLN03137 670 IDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDV 749 (1195)
T ss_pred HHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCC
Confidence 5555543 335689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHH
Q 011079 427 NVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 474 (494)
Q Consensus 427 ~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~ 474 (494)
++||||++|.|++.|+||+|||||.|.+|.|++||++.|...+..+..
T Consensus 750 R~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 750 RFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred cEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999888776666543
No 36
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-50 Score=383.47 Aligned_cols=348 Identities=28% Similarity=0.458 Sum_probs=296.3
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHhc---------CCcEEEEccCCCchhHHhHHHHHHhhhcC-CCceEEEEEcCcHHH
Q 011079 131 LLMGIFEKGFERPSPIQEESIPIALT---------GSDILARAKNGTGKTAAFCIPALEKIDQD-NNVIQVVILVPTREL 200 (494)
Q Consensus 131 l~~~l~~~~~~~~~~~Q~~~i~~~~~---------~~~~ii~~~TGsGKT~~~~~~~l~~l~~~-~~~~~~lil~P~~~l 200 (494)
+...+.++++...+|+|..++|.++. .+|+.|.||||||||++|.+|+++.+... -+..+++||+|+++|
T Consensus 148 ~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L 227 (620)
T KOG0350|consen 148 IDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTREL 227 (620)
T ss_pred HHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHH
Confidence 34458889999999999999999862 57999999999999999999999999875 345699999999999
Q ss_pred HHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCC-----CeEEEEchHHHHHhHh-cCCccccccceEEecccccc
Q 011079 201 ALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQP-----VHLLVGTPGRILDLSK-KGVCILKDCSMLVMDEADKL 274 (494)
Q Consensus 201 a~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~Ilv~T~~~l~~~~~-~~~~~l~~~~~iViDEah~~ 274 (494)
+.|++.++.++....++.|+.+.|..+...+...+.+. .+|+|+|||+|.+++. ...++|+++.++||||||+|
T Consensus 228 ~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRl 307 (620)
T KOG0350|consen 228 ALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRL 307 (620)
T ss_pred HHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHH
Confidence 99999999999999999999999999999888777642 3899999999999988 45778999999999999999
Q ss_pred cCCCcHHHHHHHHHHC----------------------------------CCCCcEEEEEeecCcchHHHHHhhcCCCeE
Q 011079 275 LSPEFQPSVEQLIRFL----------------------------------PANRQILMFSATFPVTVKDFKDKYLQKPYV 320 (494)
Q Consensus 275 ~~~~~~~~~~~~~~~~----------------------------------~~~~~~i~~SATl~~~~~~~~~~~~~~~~~ 320 (494)
++..|+.++-.+...+ ++....+++|||+..+...+...-+..|..
T Consensus 308 l~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl 387 (620)
T KOG0350|consen 308 LDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRL 387 (620)
T ss_pred HHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCce
Confidence 9877777666554333 122346889999988888888888888855
Q ss_pred EEec----cccc-ccceeEEEEeehhhhHHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHH----HcCCcEEEEccCC
Q 011079 321 INLM----DELT-LKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKIT----ELGYSCFYIHAKM 391 (494)
Q Consensus 321 ~~~~----~~~~-~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~----~~~~~~~~~~~~~ 391 (494)
..+. ..+. ...+.+++...+...+.-.+..++......++|+|+++.+.+..++..|+ +..+++-.+.|.+
T Consensus 388 ~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l 467 (620)
T KOG0350|consen 388 FHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQL 467 (620)
T ss_pred EEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhh
Confidence 5443 2222 23345555555666777788888888888899999999999999999887 2356777799999
Q ss_pred CHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHH
Q 011079 392 LQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYR 471 (494)
Q Consensus 392 ~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~ 471 (494)
+...|.+.++.|..|.+.||||+|+++||||+.+++.||+||+|.+..+|+||+||++|+|+.|.||.+.+..+...+.+
T Consensus 468 ~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~k 547 (620)
T KOG0350|consen 468 NGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSK 547 (620)
T ss_pred hHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHhCC
Q 011079 472 IEQELGT 478 (494)
Q Consensus 472 l~~~~~~ 478 (494)
+.+..+.
T Consensus 548 lL~~~~~ 554 (620)
T KOG0350|consen 548 LLKKTNL 554 (620)
T ss_pred HHHHhcc
Confidence 7766655
No 37
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=7.3e-50 Score=407.64 Aligned_cols=325 Identities=22% Similarity=0.268 Sum_probs=253.7
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 011079 137 EKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLN 216 (494)
Q Consensus 137 ~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~ 216 (494)
..||..|+|+|.++|+.+++++|+++++|||||||++|++|++.. +..+||++|+++|+.|+.+.+..+ +
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------~~~~lVi~P~~~L~~dq~~~l~~~----g 75 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------DGITLVISPLISLMEDQVLQLKAS----G 75 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------CCcEEEEecHHHHHHHHHHHHHHc----C
Confidence 358999999999999999999999999999999999999999863 236899999999999888877654 5
Q ss_pred cEEEEEECCCChHHHHH---H-hcCCCeEEEEchHHHHHhH--hcCCccccccceEEecccccccCCC--cHHHHHHH--
Q 011079 217 IQVMVTTGGTSLKDDIM---R-LYQPVHLLVGTPGRILDLS--KKGVCILKDCSMLVMDEADKLLSPE--FQPSVEQL-- 286 (494)
Q Consensus 217 ~~~~~~~g~~~~~~~~~---~-~~~~~~Ilv~T~~~l~~~~--~~~~~~l~~~~~iViDEah~~~~~~--~~~~~~~~-- 286 (494)
+.+..+.++....+... . .....+|+|+||+++.... ........++++|||||||++++++ |++.+..+
T Consensus 76 i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~ 155 (470)
T TIGR00614 76 IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGS 155 (470)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHH
Confidence 66777777665443221 1 2345799999999875421 1101136789999999999998754 77777655
Q ss_pred HHHCCCCCcEEEEEeecCcchHHHHHhhcC--CCeEEEecccccccceeEEEEeehhhhHHHHHHHHHH-hcCCCcEEEE
Q 011079 287 IRFLPANRQILMFSATFPVTVKDFKDKYLQ--KPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFS-KLQINQSIIF 363 (494)
Q Consensus 287 ~~~~~~~~~~i~~SATl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~-~~~~~~~lVF 363 (494)
+....++.+++++|||++..+.......+. ++.++. .....+++....... .......+..++. ......+|||
T Consensus 156 l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~--~s~~r~nl~~~v~~~-~~~~~~~l~~~l~~~~~~~~~IIF 232 (470)
T TIGR00614 156 LKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFC--TSFDRPNLYYEVRRK-TPKILEDLLRFIRKEFKGKSGIIY 232 (470)
T ss_pred HHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEe--CCCCCCCcEEEEEeC-CccHHHHHHHHHHHhcCCCceEEE
Confidence 233335788999999999877666655543 343332 223333332221111 1123444555554 3444566999
Q ss_pred ecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHH
Q 011079 364 CNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLH 443 (494)
Q Consensus 364 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Q 443 (494)
|+++++++.+++.|.+.++.+..+||+|++++|..+++.|.+|..+|||||+++++|||+|+|++|||+++|.|.++|+|
T Consensus 233 ~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Q 312 (470)
T TIGR00614 233 CPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQ 312 (470)
T ss_pred ECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccCCCCcceEEEEecccchHHHHHHHH
Q 011079 444 RVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 474 (494)
Q Consensus 444 r~GRagR~g~~g~~~~l~~~~~~~~~~~l~~ 474 (494)
|+|||||.|.+|.|++||++.|...+..+..
T Consensus 313 r~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 313 ESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred hhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 9999999999999999999988877666643
No 38
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=8.9e-49 Score=409.67 Aligned_cols=322 Identities=24% Similarity=0.292 Sum_probs=255.3
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011079 138 KGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI 217 (494)
Q Consensus 138 ~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (494)
.||..++|+|.++|+.+++|+|+++++|||+|||++|++|++.. ...+||++|+++|+.|+.+.+..+ ++
T Consensus 21 fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------~g~tlVisPl~sL~~dqv~~l~~~----gi 90 (607)
T PRK11057 21 FGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------DGLTLVVSPLISLMKDQVDQLLAN----GV 90 (607)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------CCCEEEEecHHHHHHHHHHHHHHc----CC
Confidence 58999999999999999999999999999999999999999854 126899999999999988877764 46
Q ss_pred EEEEEECCCChHHHHHH----hcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCC--cHHHHHHH--HHH
Q 011079 218 QVMVTTGGTSLKDDIMR----LYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE--FQPSVEQL--IRF 289 (494)
Q Consensus 218 ~~~~~~g~~~~~~~~~~----~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~--~~~~~~~~--~~~ 289 (494)
.+..+.+.......... .....+++|+||+++............++++|||||||++.+++ |++.+..+ +..
T Consensus 91 ~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~ 170 (607)
T PRK11057 91 AAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQ 170 (607)
T ss_pred cEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHH
Confidence 66666666555433221 12457899999999864211112334578999999999998754 77776555 222
Q ss_pred CCCCCcEEEEEeecCcchHHHHHhhc--CCCeEEEecccccccceeEEEEeehhhhHHHHHHHHHHhcCCCcEEEEecCh
Q 011079 290 LPANRQILMFSATFPVTVKDFKDKYL--QKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSV 367 (494)
Q Consensus 290 ~~~~~~~i~~SATl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~ 367 (494)
..++.+++++|||++..........+ .+|.+. ......+++ .+.......+...+..++......++||||+++
T Consensus 171 ~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~--~~~~~r~nl--~~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr 246 (607)
T PRK11057 171 RFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ--ISSFDRPNI--RYTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSR 246 (607)
T ss_pred hCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEE--ECCCCCCcc--eeeeeeccchHHHHHHHHHhcCCCCEEEEECcH
Confidence 23578899999999987766554443 334322 222233333 233333344556666677667778999999999
Q ss_pred hHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhcc
Q 011079 368 NRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGR 447 (494)
Q Consensus 368 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GR 447 (494)
++|+.+++.|.+.++.+..+||+|++++|..+++.|..|..+|||||+++++|||+|+|++|||+++|.|.++|+||+||
T Consensus 247 ~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GR 326 (607)
T PRK11057 247 AKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGR 326 (607)
T ss_pred HHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcceEEEEecccchHHHHHHH
Q 011079 448 SGRFGHLGLAVNLITYEDRFNLYRIE 473 (494)
Q Consensus 448 agR~g~~g~~~~l~~~~~~~~~~~l~ 473 (494)
|||.|.+|.|++||++.|...+..+.
T Consensus 327 aGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 327 AGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred ccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 99999999999999998876655543
No 39
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.9e-47 Score=401.12 Aligned_cols=323 Identities=24% Similarity=0.300 Sum_probs=260.0
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011079 138 KGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI 217 (494)
Q Consensus 138 ~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (494)
.||..++|+|.++|+.+++|+|+++++|||+|||++|++|++.. ...++|++|+++|+.|+.+.++.+ ++
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------~g~~lVisPl~sL~~dq~~~l~~~----gi 78 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------KGLTVVISPLISLMKDQVDQLRAA----GV 78 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------CCcEEEEcCCHHHHHHHHHHHHHc----CC
Confidence 68999999999999999999999999999999999999999853 226899999999999988877764 56
Q ss_pred EEEEEECCCChHHHHH----HhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCC--CcHHHHHHHH---H
Q 011079 218 QVMVTTGGTSLKDDIM----RLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSP--EFQPSVEQLI---R 288 (494)
Q Consensus 218 ~~~~~~g~~~~~~~~~----~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~--~~~~~~~~~~---~ 288 (494)
.+..+.++....+... ......+|+|+||+++............++++|||||||++.++ +|++.+..+. .
T Consensus 79 ~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~ 158 (591)
T TIGR01389 79 AAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAE 158 (591)
T ss_pred cEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHH
Confidence 7777777766554322 12356899999999986432222334568999999999999874 4888776663 3
Q ss_pred HCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeehhhhHHHHHHHHHHhcCCCcEEEEecChh
Q 011079 289 FLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVN 368 (494)
Q Consensus 289 ~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~ 368 (494)
.++ +.+++++|||++..+.......+..+....+......+++ .+.......+...+..++......++||||++++
T Consensus 159 ~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl--~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~ 235 (591)
T TIGR01389 159 RFP-QVPRIALTATADAETRQDIRELLRLADANEFITSFDRPNL--RFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRK 235 (591)
T ss_pred hCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCc--EEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHH
Confidence 343 4559999999998887776666543222222223333333 2333334456667777777766789999999999
Q ss_pred HHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccc
Q 011079 369 RVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRS 448 (494)
Q Consensus 369 ~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRa 448 (494)
.++.+++.|...++.+..+||+|+.++|..+++.|.+|..+|||||+++++|||+|++++|||+++|.|.++|+|++|||
T Consensus 236 ~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRa 315 (591)
T TIGR01389 236 KVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRA 315 (591)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcceEEEEecccchHHHHHHH
Q 011079 449 GRFGHLGLAVNLITYEDRFNLYRIE 473 (494)
Q Consensus 449 gR~g~~g~~~~l~~~~~~~~~~~l~ 473 (494)
||.|.+|.|++||++.|...+..+.
T Consensus 316 GR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 316 GRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred cCCCCCceEEEecCHHHHHHHHHHH
Confidence 9999999999999988766555443
No 40
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-48 Score=376.30 Aligned_cols=376 Identities=29% Similarity=0.430 Sum_probs=317.8
Q ss_pred cCCCCcccc----cCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcC-----C
Q 011079 116 ATKGNEFED----YFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD-----N 186 (494)
Q Consensus 116 ~~~~~~~~~----~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~-----~ 186 (494)
+.+..+|.+ +..+..++.++...+|..|+|+|.+++|.++.+++++.++|||||||++|.+|++..+... .
T Consensus 128 ~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~ 207 (593)
T KOG0344|consen 128 PPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHK 207 (593)
T ss_pred CCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCc
Confidence 344445665 6788999999999999999999999999999999999999999999999999999998643 4
Q ss_pred CceEEEEEcCcHHHHHHHHHHHHHHh--ccCCcEEEEEECCCChH-HHHHHhcCCCeEEEEchHHHHHhHhcCC--cccc
Q 011079 187 NVIQVVILVPTRELALQTSQVCKELG--KHLNIQVMVTTGGTSLK-DDIMRLYQPVHLLVGTPGRILDLSKKGV--CILK 261 (494)
Q Consensus 187 ~~~~~lil~P~~~la~q~~~~~~~~~--~~~~~~~~~~~g~~~~~-~~~~~~~~~~~Ilv~T~~~l~~~~~~~~--~~l~ 261 (494)
.+.+++|+.|+++|+.|+++.+.++. ...+..+..+....... .........++|++.||-++...+.... .++.
T Consensus 208 ~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~ 287 (593)
T KOG0344|consen 208 VGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLS 287 (593)
T ss_pred cceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhh
Confidence 56799999999999999999999998 55555554443332111 1112223467999999999999888764 5689
Q ss_pred ccceEEecccccccCC-CcHHHHHHHHHHCCC-CCcEEEEEeecCcchHHHHHhhcCCCeEEEecccc-cccceeEEEEe
Q 011079 262 DCSMLVMDEADKLLSP-EFQPSVEQLIRFLPA-NRQILMFSATFPVTVKDFKDKYLQKPYVINLMDEL-TLKGITQYYAF 338 (494)
Q Consensus 262 ~~~~iViDEah~~~~~-~~~~~~~~~~~~~~~-~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 338 (494)
.+.++|+||+|++.+. .|..++..++..+.. +..+=+||||++..++++......++..+.+.... ....+.+...+
T Consensus 288 ~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF 367 (593)
T KOG0344|consen 288 KVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVF 367 (593)
T ss_pred eeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhhee
Confidence 9999999999999988 888899999887753 56677899999999999999988887666554321 12233333333
Q ss_pred -ehhhhHHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHH-HHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCc
Q 011079 339 -VEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKI-TELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL 416 (494)
Q Consensus 339 -~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~ 416 (494)
.....|.-.+..++...-.-++|||+.+.+.|.+|...| .-.++++..+||..++.+|...+++|+.|++.|||||++
T Consensus 368 ~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdl 447 (593)
T KOG0344|consen 368 CGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDL 447 (593)
T ss_pred eecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhh
Confidence 345668888888888877779999999999999999999 556899999999999999999999999999999999999
Q ss_pred ccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCCCCccCCcchhhhh
Q 011079 417 FTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 491 (494)
Q Consensus 417 ~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 491 (494)
+++|||+.+++.||+||+|.+..+|+||+||+||+|+.|.+|.||+..|...+..+++.+...-.++|.+++...
T Consensus 448 l~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~evpe~~m~~~ 522 (593)
T KOG0344|consen 448 LARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGCEVPEKIMGIK 522 (593)
T ss_pred hhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCCcchHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988653
No 41
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-48 Score=336.78 Aligned_cols=340 Identities=41% Similarity=0.699 Sum_probs=310.1
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcH
Q 011079 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (494)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (494)
..-|.++-|.+++++++-+.||+.|+.+|.++||...-|.|+++.|..|.|||.+|.+..++.+........+|++|.||
T Consensus 41 ssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtr 120 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTR 120 (387)
T ss_pred ccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccH
Confidence 34699999999999999999999999999999999999999999999999999999999999998877778899999999
Q ss_pred HHHHHHHHHHHHHhccC-CcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccC-
Q 011079 199 ELALQTSQVCKELGKHL-NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS- 276 (494)
Q Consensus 199 ~la~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~- 276 (494)
+||-|+.....++.+.+ +.++.+++||..+..+...+.+.++|+|+|||+++.+.+...++++++.++|+||||.|+.
T Consensus 121 elafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~ 200 (387)
T KOG0329|consen 121 ELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQ 200 (387)
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHH
Confidence 99999999999998876 6889999999999988888888899999999999999999999999999999999998765
Q ss_pred CCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEeccc--ccccceeEEEEeehhhhHHHHHHHHHHh
Q 011079 277 PEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDE--LTLKGITQYYAFVEERQKVHCLNTLFSK 354 (494)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~~ll~~ 354 (494)
-+.+..++.+.+..|...|++++|||++.++.....+|+.+|..+.+.++ .+..++.++|....+..|...+..++..
T Consensus 201 lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~ 280 (387)
T KOG0329|consen 201 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDV 280 (387)
T ss_pred HHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhh
Confidence 56788899999999999999999999999999999999999988777654 4567889999999999999999999999
Q ss_pred cCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCC
Q 011079 355 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF 434 (494)
Q Consensus 355 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~ 434 (494)
+..+.++||+.+... | + | ..+ +|||+.+++|+||..++.|+|||.
T Consensus 281 LeFNQVvIFvKsv~R-------l--------------~----------f---~kr-~vat~lfgrgmdiervNi~~NYdm 325 (387)
T KOG0329|consen 281 LEFNQVVIFVKSVQR-------L--------------S----------F---QKR-LVATDLFGRGMDIERVNIVFNYDM 325 (387)
T ss_pred hhhcceeEeeehhhh-------h--------------h----------h---hhh-hHHhhhhccccCcccceeeeccCC
Confidence 999999999998765 1 0 2 123 899999999999999999999999
Q ss_pred CCCHHHHHHHhccccCCCCcceEEEEec-ccchHHHHHHHHHhCCCCccCCcchhhhhhc
Q 011079 435 PKNSETYLHRVGRSGRFGHLGLAVNLIT-YEDRFNLYRIEQELGTEIKQIPPHIDQAIYC 493 (494)
Q Consensus 435 p~s~~~~~Qr~GRagR~g~~g~~~~l~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 493 (494)
|.+..+|+||+|||||.|..|.++.|++ ++|...+..+.+.+...+.++|..++-+.|.
T Consensus 326 p~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpdeid~s~y~ 385 (387)
T KOG0329|consen 326 PEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDEIDFSTYE 385 (387)
T ss_pred CCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcccchhhhh
Confidence 9999999999999999999999999998 5678889999999999999999998877664
No 42
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.5e-46 Score=375.06 Aligned_cols=326 Identities=25% Similarity=0.303 Sum_probs=261.3
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011079 138 KGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI 217 (494)
Q Consensus 138 ~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (494)
.||..+++-|.++|..+++++|+++.+|||+|||+||.+|++-. .+ .+|||+|..+|+.++.+.+++.+ +
T Consensus 13 fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---~G---~TLVVSPLiSLM~DQV~~l~~~G----i 82 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---EG---LTLVVSPLISLMKDQVDQLEAAG----I 82 (590)
T ss_pred hCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---CC---CEEEECchHHHHHHHHHHHHHcC----c
Confidence 37999999999999999999999999999999999999999865 22 68999999999999888887764 5
Q ss_pred EEEEEECCCChHHHHH---Hh-cCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCC--cHHHHHHHHH---
Q 011079 218 QVMVTTGGTSLKDDIM---RL-YQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE--FQPSVEQLIR--- 288 (494)
Q Consensus 218 ~~~~~~g~~~~~~~~~---~~-~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~--~~~~~~~~~~--- 288 (494)
.+..+.+..+..+... .+ ....+++|-+|++|..-.......-..++++|||||||+++++ |++.+..+..
T Consensus 83 ~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~ 162 (590)
T COG0514 83 RAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRA 162 (590)
T ss_pred eeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHh
Confidence 5655555544433322 22 2357999999999865222212224568999999999999975 9999988743
Q ss_pred HCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeeh-hhhHHHHHHHHHHhcCCCcEEEEecCh
Q 011079 289 FLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVE-ERQKVHCLNTLFSKLQINQSIIFCNSV 367 (494)
Q Consensus 289 ~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~ll~~~~~~~~lVF~~~~ 367 (494)
.++ +..++++|||.++.+...+...+.......+...+..+++........ ...+...+.. ......+..||||.|+
T Consensus 163 ~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~GIIYc~sR 240 (590)
T COG0514 163 GLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLAFLAT-VLPQLSKSGIIYCLTR 240 (590)
T ss_pred hCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHHHHHHHHh-hccccCCCeEEEEeeH
Confidence 343 788999999999999988887776554444445555566533322222 2223332222 1245567799999999
Q ss_pred hHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhcc
Q 011079 368 NRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGR 447 (494)
Q Consensus 368 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GR 447 (494)
+.++.+++.|...|+.+..||++|+.++|..+.++|.+++.+|+|||.++++|||.|||++||||++|.|.++|+|.+||
T Consensus 241 k~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GR 320 (590)
T COG0514 241 KKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGR 320 (590)
T ss_pred HhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcceEEEEecccchHHHHHHHHH
Q 011079 448 SGRFGHLGLAVNLITYEDRFNLYRIEQE 475 (494)
Q Consensus 448 agR~g~~g~~~~l~~~~~~~~~~~l~~~ 475 (494)
|||+|.+..|++||.+.|......+.+.
T Consensus 321 AGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 321 AGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred ccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 9999999999999999987766665544
No 43
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=9.4e-46 Score=396.52 Aligned_cols=333 Identities=23% Similarity=0.321 Sum_probs=260.7
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHH
Q 011079 121 EFEDYFLKRELLMGIFEKGFERPSPIQEESIPI-ALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE 199 (494)
Q Consensus 121 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~ 199 (494)
.|+++++++.+++.+.+.||..|+|+|.++++. +.+++++++++|||||||++|.+|++..+.. +.++||++|+++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---~~kal~i~P~ra 78 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---GGKALYIVPLRA 78 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---CCcEEEEeChHH
Confidence 578889999999999999999999999999998 7789999999999999999999999998864 348999999999
Q ss_pred HHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCc
Q 011079 200 LALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEF 279 (494)
Q Consensus 200 la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~ 279 (494)
|+.|+.+.++++. ..++++..++|+...... .....+|+|+||+++..++++....+.++++||+||+|.+.+.++
T Consensus 79 La~q~~~~~~~~~-~~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~r 154 (737)
T PRK02362 79 LASEKFEEFERFE-ELGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANR 154 (737)
T ss_pred HHHHHHHHHHHhh-cCCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcc
Confidence 9999999998765 458899999998765432 224679999999999998887666688999999999999988888
Q ss_pred HHHHHHHHHHC---CCCCcEEEEEeecCcchHHHHHhhcCCCeEE----------Eec--ccccccceeEEEEe-ehhhh
Q 011079 280 QPSVEQLIRFL---PANRQILMFSATFPVTVKDFKDKYLQKPYVI----------NLM--DELTLKGITQYYAF-VEERQ 343 (494)
Q Consensus 280 ~~~~~~~~~~~---~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~----------~~~--~~~~~~~~~~~~~~-~~~~~ 343 (494)
++.++.++.++ .++.|+|++|||++. ..++. .|+....+. .+. ....... ...... .....
T Consensus 155 g~~le~il~rl~~~~~~~qii~lSATl~n-~~~la-~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~-~~~~~~~~~~~~ 231 (737)
T PRK02362 155 GPTLEVTLAKLRRLNPDLQVVALSATIGN-ADELA-DWLDAELVDSEWRPIDLREGVFYGGAIHFDD-SQREVEVPSKDD 231 (737)
T ss_pred hHHHHHHHHHHHhcCCCCcEEEEcccCCC-HHHHH-HHhCCCcccCCCCCCCCeeeEecCCeecccc-ccccCCCccchH
Confidence 88888776554 567899999999874 33332 333221110 000 0000000 000000 00011
Q ss_pred HHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHc------------------------------------CCcEEEE
Q 011079 344 KVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITEL------------------------------------GYSCFYI 387 (494)
Q Consensus 344 k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~------------------------------------~~~~~~~ 387 (494)
....+...+. ..+++||||+++..|+.+++.|... ...+.++
T Consensus 232 ~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~h 309 (737)
T PRK02362 232 TLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFH 309 (737)
T ss_pred HHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEee
Confidence 2223333322 5679999999999999988887643 1368899
Q ss_pred ccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEE----cC-----CCCCHHHHHHHhccccCCCCc--ce
Q 011079 388 HAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVIN----FD-----FPKNSETYLHRVGRSGRFGHL--GL 456 (494)
Q Consensus 388 ~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~----~~-----~p~s~~~~~Qr~GRagR~g~~--g~ 456 (494)
|++|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ |+ .|.+..+|.||+|||||.|.. |.
T Consensus 310 Hagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~ 389 (737)
T PRK02362 310 HAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGE 389 (737)
T ss_pred cCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCce
Confidence 99999999999999999999999999999999999999999996 55 588999999999999998865 89
Q ss_pred EEEEecccc
Q 011079 457 AVNLITYED 465 (494)
Q Consensus 457 ~~~l~~~~~ 465 (494)
|+++....+
T Consensus 390 ~ii~~~~~~ 398 (737)
T PRK02362 390 AVLLAKSYD 398 (737)
T ss_pred EEEEecCch
Confidence 999987653
No 44
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=6.1e-45 Score=393.55 Aligned_cols=352 Identities=19% Similarity=0.275 Sum_probs=254.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcC------CCceEEEEEcCcHHH
Q 011079 127 LKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD------NNVIQVVILVPTREL 200 (494)
Q Consensus 127 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~------~~~~~~lil~P~~~l 200 (494)
+++.+.+. .+.+|..|+|+|.++|+.+++|+++++++|||||||++|.+|+++.+... ..+.++||++|+++|
T Consensus 18 l~~~v~~~-~~~~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREW-FKEKFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHH-HHHccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 44555554 44579999999999999999999999999999999999999999887642 235689999999999
Q ss_pred HHHHHHHHHH-------Hh----ccC-CcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCC--ccccccceE
Q 011079 201 ALQTSQVCKE-------LG----KHL-NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGV--CILKDCSML 266 (494)
Q Consensus 201 a~q~~~~~~~-------~~----~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~--~~l~~~~~i 266 (494)
+.|+.+.+.. +. ..+ ++.+...+|+....+....+...++|+|+||++|..++.... ..+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9998765442 22 233 678899999998887777777789999999999987776542 247899999
Q ss_pred EecccccccCCCcHHHHHHHH----HHCCCCCcEEEEEeecCcchHHHHHhhcCC-----CeEEEecccccccceeEEEE
Q 011079 267 VMDEADKLLSPEFQPSVEQLI----RFLPANRQILMFSATFPVTVKDFKDKYLQK-----PYVINLMDELTLKGITQYYA 337 (494)
Q Consensus 267 ViDEah~~~~~~~~~~~~~~~----~~~~~~~~~i~~SATl~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 337 (494)
|+||+|.+.+..++..+...+ ...+...|+|++|||+++ ..++....... +.-..+..............
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~ 255 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVI 255 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEEccCCCccceEEEe
Confidence 999999998777666555443 333467899999999874 23333222111 11111111100011100000
Q ss_pred -------eehhh----hHHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHc------CCcEEEEccCCCHHHHHHHH
Q 011079 338 -------FVEER----QKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITEL------GYSCFYIHAKMLQDHRNRVF 400 (494)
Q Consensus 338 -------~~~~~----~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~r~~i~ 400 (494)
..... .....+..++. ..+++||||+++..|+.++..|.+. +..+..+||++++++|..++
T Consensus 256 ~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve 333 (876)
T PRK13767 256 SPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVE 333 (876)
T ss_pred ccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHH
Confidence 00111 12223333332 3468999999999999999999873 46799999999999999999
Q ss_pred HHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCC-CCcceEEEEec-ccchHHHH-HHHHHhC
Q 011079 401 HDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRF-GHLGLAVNLIT-YEDRFNLY-RIEQELG 477 (494)
Q Consensus 401 ~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~-g~~g~~~~l~~-~~~~~~~~-~l~~~~~ 477 (494)
+.|++|..+|||||+++++|||++++++||+++.|.+..+|+||+||+||. |..+.++++.. ..|..... -+.....
T Consensus 334 ~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~~ 413 (876)
T PRK13767 334 EKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKKARE 413 (876)
T ss_pred HHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999986 44444444444 33433322 2334455
Q ss_pred CCCcc
Q 011079 478 TEIKQ 482 (494)
Q Consensus 478 ~~~~~ 482 (494)
..+++
T Consensus 414 ~~ie~ 418 (876)
T PRK13767 414 GKIDR 418 (876)
T ss_pred CCCCC
Confidence 55555
No 45
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.9e-44 Score=380.28 Aligned_cols=305 Identities=17% Similarity=0.230 Sum_probs=239.8
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHH-HHHhccCCcEEEEEEC
Q 011079 146 IQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVC-KELGKHLNIQVMVTTG 224 (494)
Q Consensus 146 ~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~-~~~~~~~~~~~~~~~g 224 (494)
+-.+.+..+..++++|++|+||||||++|.+++++... .+.+++|+.|||++|.|+++.+ ..+....+..|++.++
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr 82 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG---IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVR 82 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc---cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEc
Confidence 44556667777889999999999999999999998763 2348999999999999998866 4566666777776666
Q ss_pred CCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccc-cccCCCcHH-HHHHHHHHCCCCCcEEEEEee
Q 011079 225 GTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEAD-KLLSPEFQP-SVEQLIRFLPANRQILMFSAT 302 (494)
Q Consensus 225 ~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah-~~~~~~~~~-~~~~~~~~~~~~~~~i~~SAT 302 (494)
+.. .....++|+|+|+|+|++++..+ ..+.++++|||||+| ++++.++.- .+..+...++++.|+|+||||
T Consensus 83 ~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSAT 155 (819)
T TIGR01970 83 GEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSAT 155 (819)
T ss_pred ccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCC
Confidence 543 22356799999999999988875 469999999999999 477766654 345566667889999999999
Q ss_pred cCcchHHHHHhhcCCCeEEEecccccccceeEEEEeehhhhHH-----HHHHHHHHhcCCCcEEEEecChhHHHHHHHHH
Q 011079 303 FPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKV-----HCLNTLFSKLQINQSIIFCNSVNRVELLAKKI 377 (494)
Q Consensus 303 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L 377 (494)
++... ...++.++.++...... ..+..+|.......+. ..+..++.. ..+++||||+++.+++.+++.|
T Consensus 156 l~~~~---l~~~l~~~~vI~~~gr~--~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L 229 (819)
T TIGR01970 156 LDGER---LSSLLPDAPVVESEGRS--FPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQL 229 (819)
T ss_pred CCHHH---HHHHcCCCcEEEecCcc--eeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHH
Confidence 98543 35666665555544322 1234444433322221 233344433 4689999999999999999999
Q ss_pred HH---cCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCC------------------
Q 011079 378 TE---LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPK------------------ 436 (494)
Q Consensus 378 ~~---~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~------------------ 436 (494)
.+ .++.+.++||+|++++|.++++.|++|.++||||||++++|||||+|++|||+++|.
T Consensus 230 ~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~i 309 (819)
T TIGR01970 230 AERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRI 309 (819)
T ss_pred HhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEE
Confidence 87 378999999999999999999999999999999999999999999999999999874
Q ss_pred CHHHHHHHhccccCCCCcceEEEEecccchH
Q 011079 437 NSETYLHRVGRSGRFGHLGLAVNLITYEDRF 467 (494)
Q Consensus 437 s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~ 467 (494)
|.++|.||+|||||. .+|.||.||++.+..
T Consensus 310 Skasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 310 SQASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred CHHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 567799999999999 699999999987543
No 46
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=4.4e-44 Score=382.72 Aligned_cols=335 Identities=22% Similarity=0.326 Sum_probs=262.2
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHH
Q 011079 121 EFEDYFLKRELLMGIFEKGFERPSPIQEESIPI-ALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE 199 (494)
Q Consensus 121 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~ 199 (494)
.|+++++++.+.+.+.+.||..|+|+|.++++. +++++++++++|||||||++|.+|++..+... +.++||++|+++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~--~~~~l~l~P~~a 79 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE--GGKAVYLVPLKA 79 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc--CCeEEEEeChHH
Confidence 477889999999999999999999999999986 78999999999999999999999999887653 348999999999
Q ss_pred HHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCc
Q 011079 200 LALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEF 279 (494)
Q Consensus 200 la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~ 279 (494)
|+.|+.+.+..+. ..++.+..++|+....... ...++|+|+||+++..++......++++++||+||+|.+.+..+
T Consensus 80 La~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~~---~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~r 155 (720)
T PRK00254 80 LAEEKYREFKDWE-KLGLRVAMTTGDYDSTDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDR 155 (720)
T ss_pred HHHHHHHHHHHHh-hcCCEEEEEeCCCCCchhh---hccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccc
Confidence 9999999888764 5688999999987654322 25689999999999988877666689999999999999988889
Q ss_pred HHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEeccccccc-c-eeEEEEeehh-------hhHHHHHHH
Q 011079 280 QPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLK-G-ITQYYAFVEE-------RQKVHCLNT 350 (494)
Q Consensus 280 ~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~-------~~k~~~l~~ 350 (494)
+..+..++..+..+.|+|++|||++. ..++.. |+....+.......... . ..+.+..... ......+..
T Consensus 156 g~~le~il~~l~~~~qiI~lSATl~n-~~~la~-wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (720)
T PRK00254 156 GATLEMILTHMLGRAQILGLSATVGN-AEELAE-WLNAELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYD 233 (720)
T ss_pred hHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHH-HhCCccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHH
Confidence 99999999999889999999999974 444443 54433211110000000 0 0001111111 111122333
Q ss_pred HHHhcCCCcEEEEecChhHHHHHHHHHHH---------------------------------cCCcEEEEccCCCHHHHH
Q 011079 351 LFSKLQINQSIIFCNSVNRVELLAKKITE---------------------------------LGYSCFYIHAKMLQDHRN 397 (494)
Q Consensus 351 ll~~~~~~~~lVF~~~~~~~~~l~~~L~~---------------------------------~~~~~~~~~~~~~~~~r~ 397 (494)
++. ..+++||||+++..|+.++..|.. ....+.++|++|++++|.
T Consensus 234 ~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~ 311 (720)
T PRK00254 234 AVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERV 311 (720)
T ss_pred HHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHH
Confidence 333 357899999999999887766632 123589999999999999
Q ss_pred HHHHHhhcCCccEEEEcCcccccCCCCCCCEEEE-------cCCC-CCHHHHHHHhccccCCC--CcceEEEEecccc
Q 011079 398 RVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVIN-------FDFP-KNSETYLHRVGRSGRFG--HLGLAVNLITYED 465 (494)
Q Consensus 398 ~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~-------~~~p-~s~~~~~Qr~GRagR~g--~~g~~~~l~~~~~ 465 (494)
.+++.|++|.++|||||+++++|+|+|++++||. ++.| .+..+|.||+|||||.| ..|.|+++.+..+
T Consensus 312 ~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 312 LIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 9999999999999999999999999999999994 4443 36789999999999964 5699999988655
No 47
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=7.3e-44 Score=378.28 Aligned_cols=304 Identities=16% Similarity=0.251 Sum_probs=238.9
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHH-HHHhccCCcEEEEEEC
Q 011079 146 IQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVC-KELGKHLNIQVMVTTG 224 (494)
Q Consensus 146 ~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~-~~~~~~~~~~~~~~~g 224 (494)
+-.+.+..+.+++++++.|+||||||++|.+++++..... .+++|++|||++|.|+++.+ ..+....+..++..++
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~---~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr 85 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGIN---GKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMR 85 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcC---CeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEec
Confidence 3445666777788999999999999999999999864322 38999999999999998876 4566667778888777
Q ss_pred CCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEeccccc-ccCCCc-HHHHHHHHHHCCCCCcEEEEEee
Q 011079 225 GTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADK-LLSPEF-QPSVEQLIRFLPANRQILMFSAT 302 (494)
Q Consensus 225 ~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~-~~~~~~-~~~~~~~~~~~~~~~~~i~~SAT 302 (494)
+.... ...++|+|+|+|+|++++..+ ..+.++++|||||+|+ .++.++ ...+..++..++++.|+|+||||
T Consensus 86 ~~~~~------~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSAT 158 (812)
T PRK11664 86 AESKV------GPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSAT 158 (812)
T ss_pred Ccccc------CCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecC
Confidence 65432 245689999999999988875 4699999999999996 455443 34455666777889999999999
Q ss_pred cCcchHHHHHhhcCCCeEEEecccccccceeEEEEeehhhhHHH-----HHHHHHHhcCCCcEEEEecChhHHHHHHHHH
Q 011079 303 FPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVH-----CLNTLFSKLQINQSIIFCNSVNRVELLAKKI 377 (494)
Q Consensus 303 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-----~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L 377 (494)
++.. .+ ..++.++.++...... ..+.++|.......+.. .+..++.. ..+.+||||+++.+++.+++.|
T Consensus 159 l~~~--~l-~~~~~~~~~I~~~gr~--~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L 232 (812)
T PRK11664 159 LDND--RL-QQLLPDAPVIVSEGRS--FPVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQL 232 (812)
T ss_pred CCHH--HH-HHhcCCCCEEEecCcc--ccceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHH
Confidence 9853 33 4566655555544321 12444444333333332 33334333 4689999999999999999999
Q ss_pred HH---cCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCC------------------
Q 011079 378 TE---LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPK------------------ 436 (494)
Q Consensus 378 ~~---~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~------------------ 436 (494)
.+ .++.+.++||++++.+|.+++..|++|.++||||||++++||||++|++|||++.+.
T Consensus 233 ~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~i 312 (812)
T PRK11664 233 ASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRI 312 (812)
T ss_pred HHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEee
Confidence 87 578899999999999999999999999999999999999999999999999988764
Q ss_pred CHHHHHHHhccccCCCCcceEEEEecccch
Q 011079 437 NSETYLHRVGRSGRFGHLGLAVNLITYEDR 466 (494)
Q Consensus 437 s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~ 466 (494)
|.++|.||+|||||. .+|.||.||++.+.
T Consensus 313 Skasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 313 SQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred chhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 557899999999999 59999999997754
No 48
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=2.6e-43 Score=366.31 Aligned_cols=312 Identities=21% Similarity=0.314 Sum_probs=241.2
Q ss_pred CCCCCCcHHHHHHHHHHhcCC-cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEE-EcCcHHHHHHHHHHHHHHhccC
Q 011079 138 KGFERPSPIQEESIPIALTGS-DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVI-LVPTRELALQTSQVCKELGKHL 215 (494)
Q Consensus 138 ~~~~~~~~~Q~~~i~~~~~~~-~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~li-l~P~~~la~q~~~~~~~~~~~~ 215 (494)
.||. |+|||.++++.++.|+ ++++.+|||||||.++.++++.. ......++.|| ++|||+|+.|+++.+.++++.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l 89 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERL 89 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cccccccceEEEeCchHHHHHHHHHHHHHHHHHh
Confidence 4787 9999999999999998 58888999999999776555533 22233344554 6799999999999999988755
Q ss_pred -----------------------CcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCc--------------
Q 011079 216 -----------------------NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVC-------------- 258 (494)
Q Consensus 216 -----------------------~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~-------------- 258 (494)
++++..++||.....++..+..+++|+|+|++.+.. ..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~s----r~L~~gYg~~~~~~pi~ 165 (844)
T TIGR02621 90 PDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGS----RLLFSGYGCGFKSRPLH 165 (844)
T ss_pred cccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcC----Cccccccccccccccch
Confidence 478899999999999999988999999999655432 222
Q ss_pred --cccccceEEecccccccCCCcHHHHHHHHHHC--CC---CCcEEEEEeecCcchHHHHHhhcCCCeEEEec-cccccc
Q 011079 259 --ILKDCSMLVMDEADKLLSPEFQPSVEQLIRFL--PA---NRQILMFSATFPVTVKDFKDKYLQKPYVINLM-DELTLK 330 (494)
Q Consensus 259 --~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~--~~---~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 330 (494)
.+.++++||||||| ++.+|...+..+++.+ +. ++|+++||||++.++.++...++.++..+.+. ......
T Consensus 166 ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ 243 (844)
T TIGR02621 166 AGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAK 243 (844)
T ss_pred hhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccccccccc
Confidence 26889999999999 5788999999999964 33 26999999999988888877787777655443 223333
Q ss_pred ceeEEEEeehhhhHHHHHHHHH---HhcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHH-----HHHHH
Q 011079 331 GITQYYAFVEERQKVHCLNTLF---SKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRN-----RVFHD 402 (494)
Q Consensus 331 ~~~~~~~~~~~~~k~~~l~~ll---~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~-----~i~~~ 402 (494)
.+.+++. .+...|...+...+ .....+++||||++++.++.+++.|.+.++ ..+||.|++.+|. .+++.
T Consensus 244 ki~q~v~-v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~ 320 (844)
T TIGR02621 244 KIVKLVP-PSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNR 320 (844)
T ss_pred ceEEEEe-cChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHH
Confidence 4444432 23333333222221 123457899999999999999999998876 8999999999999 78999
Q ss_pred hhc----CC-------ccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceE-EEEecc
Q 011079 403 FRN----GA-------CRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLA-VNLITY 463 (494)
Q Consensus 403 f~~----g~-------~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~-~~l~~~ 463 (494)
|++ |. ..|||||+++++||||+. ++||++..| .++|+||+||+||.|..|.+ +.+++.
T Consensus 321 Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 321 FLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 987 44 689999999999999986 888887665 68999999999999885433 555543
No 49
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=3e-43 Score=374.80 Aligned_cols=348 Identities=20% Similarity=0.282 Sum_probs=259.6
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHH
Q 011079 121 EFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTREL 200 (494)
Q Consensus 121 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~l 200 (494)
.|.++++++.+++.+.+.+|. ++++|.++++.+.+++++++++|||||||+++.++++..+... .+++|++|+++|
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~---~k~v~i~P~raL 77 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG---LKSIYIVPLRSL 77 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhC---CcEEEEechHHH
Confidence 477888999999999999986 9999999999999999999999999999999999999887653 378999999999
Q ss_pred HHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcH
Q 011079 201 ALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQ 280 (494)
Q Consensus 201 a~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~ 280 (494)
+.|+++.+.++. ..+..+...+|+...... ....++|+|+||+++..++.++...+.++++||+||+|++.+..++
T Consensus 78 a~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg 153 (674)
T PRK01172 78 AMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRG 153 (674)
T ss_pred HHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCcc
Confidence 999999888764 567888888887664332 2246799999999999988887777899999999999999888888
Q ss_pred HHHHHHHHH---CCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEeccccccc-ceeEE-EEeeh--hhhHHHHHHHHHH
Q 011079 281 PSVEQLIRF---LPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLK-GITQY-YAFVE--ERQKVHCLNTLFS 353 (494)
Q Consensus 281 ~~~~~~~~~---~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~--~~~k~~~l~~ll~ 353 (494)
..++.++.. ++++.|+|++|||++. ..++.. |+....+.......+.. .+... ....+ ...... +..++.
T Consensus 154 ~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~-wl~~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~-~~~~i~ 230 (674)
T PRK01172 154 PTLETVLSSARYVNPDARILALSATVSN-ANELAQ-WLNASLIKSNFRPVPLKLGILYRKRLILDGYERSQVD-INSLIK 230 (674)
T ss_pred HHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHH-HhCCCccCCCCCCCCeEEEEEecCeeeeccccccccc-HHHHHH
Confidence 888777543 4567899999999864 444443 44332211100000000 00000 00011 111111 222222
Q ss_pred h--cCCCcEEEEecChhHHHHHHHHHHHc-------------------------CCcEEEEccCCCHHHHHHHHHHhhcC
Q 011079 354 K--LQINQSIIFCNSVNRVELLAKKITEL-------------------------GYSCFYIHAKMLQDHRNRVFHDFRNG 406 (494)
Q Consensus 354 ~--~~~~~~lVF~~~~~~~~~l~~~L~~~-------------------------~~~~~~~~~~~~~~~r~~i~~~f~~g 406 (494)
. ...+++||||++++.++.++..|.+. ...+.++|++|++++|..+++.|++|
T Consensus 231 ~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g 310 (674)
T PRK01172 231 ETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNR 310 (674)
T ss_pred HHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcC
Confidence 2 24679999999999999999888653 12478899999999999999999999
Q ss_pred CccEEEEcCcccccCCCCCCCEEEEcC---------CCCCHHHHHHHhccccCCCC--cceEEEEecccchHHHHHHHHH
Q 011079 407 ACRNLVCTDLFTRGIDIQAVNVVINFD---------FPKNSETYLHRVGRSGRFGH--LGLAVNLITYEDRFNLYRIEQE 475 (494)
Q Consensus 407 ~~~vlvaT~~~~~Gidi~~v~~VI~~~---------~p~s~~~~~Qr~GRagR~g~--~g~~~~l~~~~~~~~~~~l~~~ 475 (494)
.++|||||+++++|+|+|+..+|| .+ .|.+..+|.||+|||||.|. .|.|+++....+. +..+.++
T Consensus 311 ~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~--~~~~~~~ 387 (674)
T PRK01172 311 YIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPAS--YDAAKKY 387 (674)
T ss_pred CCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCccc--HHHHHHH
Confidence 999999999999999999875555 33 25689999999999999884 5778777654432 2234455
Q ss_pred hCCCCcc
Q 011079 476 LGTEIKQ 482 (494)
Q Consensus 476 ~~~~~~~ 482 (494)
+..+.++
T Consensus 388 l~~~~~p 394 (674)
T PRK01172 388 LSGEPEP 394 (674)
T ss_pred HcCCCCc
Confidence 5443333
No 50
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.1e-42 Score=371.98 Aligned_cols=322 Identities=22% Similarity=0.232 Sum_probs=251.8
Q ss_pred CCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcC------CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcH
Q 011079 126 FLKRELLMGIFE-KGFERPSPIQEESIPIALTG------SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (494)
Q Consensus 126 ~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~------~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (494)
..+..+.+.+.+ .+| .|+++|.++|+.++++ +|++++|+||||||.+|+.+++..+..+ .+++|++||+
T Consensus 435 ~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g---~qvlvLvPT~ 510 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG---KQVAVLVPTT 510 (926)
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC---CeEEEEeCcH
Confidence 345566666655 478 5999999999999975 6899999999999999999999887653 4899999999
Q ss_pred HHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHH---Hhc-CCCeEEEEchHHHHHhHhcCCccccccceEEecccccc
Q 011079 199 ELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIM---RLY-QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKL 274 (494)
Q Consensus 199 ~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~-~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~ 274 (494)
+||.|+++.++++....++++..++|+....+... .+. ..++|+|+||..+ .. ...+.++++|||||+|++
T Consensus 511 ~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~~-~v~f~~L~llVIDEahrf 585 (926)
T TIGR00580 511 LLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----QK-DVKFKDLGLLIIDEEQRF 585 (926)
T ss_pred HHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----hC-CCCcccCCEEEeeccccc
Confidence 99999999999988888889988888776543322 222 3589999999432 22 345889999999999984
Q ss_pred cCCCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeehhhhHHHHHHHHHHh
Q 011079 275 LSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSK 354 (494)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~ 354 (494)
.......+..++.+.++++||||+.+...........++..+...... ...+..++...........+...+
T Consensus 586 -----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~-R~~V~t~v~~~~~~~i~~~i~~el-- 657 (926)
T TIGR00580 586 -----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED-RLPVRTFVMEYDPELVREAIRREL-- 657 (926)
T ss_pred -----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC-ccceEEEEEecCHHHHHHHHHHHH--
Confidence 334456667777889999999998766666555555566555443221 112333332222211111121111
Q ss_pred cCCCcEEEEecChhHHHHHHHHHHHc--CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEc
Q 011079 355 LQINQSIIFCNSVNRVELLAKKITEL--GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINF 432 (494)
Q Consensus 355 ~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~ 432 (494)
...++++|||++++.++.+++.|.+. ++.+..+||.|++.+|..+++.|++|+.+|||||+++++|||+|++++||++
T Consensus 658 ~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~ 737 (926)
T TIGR00580 658 LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIE 737 (926)
T ss_pred HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEe
Confidence 24579999999999999999999985 7889999999999999999999999999999999999999999999999999
Q ss_pred CCCC-CHHHHHHHhccccCCCCcceEEEEeccc
Q 011079 433 DFPK-NSETYLHRVGRSGRFGHLGLAVNLITYE 464 (494)
Q Consensus 433 ~~p~-s~~~~~Qr~GRagR~g~~g~~~~l~~~~ 464 (494)
+.|. +.++|.||+||+||.|+.|.||+|+++.
T Consensus 738 ~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 738 RADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred cCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 9865 6889999999999999999999999754
No 51
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=2.3e-43 Score=365.01 Aligned_cols=314 Identities=17% Similarity=0.206 Sum_probs=231.9
Q ss_pred HHHHHHHHHHhcCCcEEEEccCCCchhHHhHH---------HHHHhhh---cCCCceEEEEEcCcHHHHHHHHHHHHHHh
Q 011079 145 PIQEESIPIALTGSDILARAKNGTGKTAAFCI---------PALEKID---QDNNVIQVVILVPTRELALQTSQVCKELG 212 (494)
Q Consensus 145 ~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~---------~~l~~l~---~~~~~~~~lil~P~~~la~q~~~~~~~~~ 212 (494)
.+|.++++.+++++++|+.|+||||||+++.. +.+..+. ......+++|++||++||.|+...+.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999998433 3333332 13334589999999999999888876654
Q ss_pred cc---CCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHH
Q 011079 213 KH---LNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRF 289 (494)
Q Consensus 213 ~~---~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~ 289 (494)
.. .+..+...+|+.... .........+|+++|++.. ...+.++++|||||||++...+ ..+..+++.
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~-~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--DllL~llk~ 316 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDE-LINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVARK 316 (675)
T ss_pred CccccCCceEEEEECCcchH-HhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hHHHHHHHH
Confidence 33 356678888887632 2122223678999997631 1247899999999999876543 344455544
Q ss_pred C-CCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeeh----------hhhHHHHHHHHHHh--cC
Q 011079 290 L-PANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVE----------ERQKVHCLNTLFSK--LQ 356 (494)
Q Consensus 290 ~-~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~k~~~l~~ll~~--~~ 356 (494)
. +..+|+++||||++.++..+ ..++.++..+.+... ....+.+++.... ...+...+..+... ..
T Consensus 317 ~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr-t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~ 394 (675)
T PHA02653 317 HIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG-TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPK 394 (675)
T ss_pred hhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC-cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhccc
Confidence 3 23458999999999888776 577888877776543 2233444443211 11222233333222 23
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc--CCcEEEEccCCCHHHHHHHHHHh-hcCCccEEEEcCcccccCCCCCCCEEEEcC
Q 011079 357 INQSIIFCNSVNRVELLAKKITEL--GYSCFYIHAKMLQDHRNRVFHDF-RNGACRNLVCTDLFTRGIDIQAVNVVINFD 433 (494)
Q Consensus 357 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~i~~~f-~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~ 433 (494)
.+++||||+++++++.+++.|.+. ++.+.++||++++. ++.++.| ++|+++|||||+++++|||||+|++|||+|
T Consensus 395 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G 472 (675)
T PHA02653 395 GSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTG 472 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECC
Confidence 468999999999999999999987 68999999999975 4566676 789999999999999999999999999998
Q ss_pred ---CCC---------CHHHHHHHhccccCCCCcceEEEEecccchHHHHHHH
Q 011079 434 ---FPK---------NSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 473 (494)
Q Consensus 434 ---~p~---------s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~ 473 (494)
.|. |.++|.||+|||||. ++|.||.||++++...+.+++
T Consensus 473 ~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri~ 523 (675)
T PHA02653 473 RVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRID 523 (675)
T ss_pred CccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHHh
Confidence 554 889999999999999 799999999988754444443
No 52
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.2e-42 Score=359.36 Aligned_cols=351 Identities=22% Similarity=0.298 Sum_probs=274.5
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcC-----CCceEEEEEcCcHHH
Q 011079 126 FLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD-----NNVIQVVILVPTREL 200 (494)
Q Consensus 126 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~-----~~~~~~lil~P~~~l 200 (494)
.|++.+.+.++.. |..||+.|.+|||.+.+|+++++++|||||||+++.+|++..+... ..+..+|||+|.++|
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHH
Confidence 3677788888877 9999999999999999999999999999999999999999999876 345789999999999
Q ss_pred HHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcC--CccccccceEEecccccccCCC
Q 011079 201 ALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG--VCILKDCSMLVMDEADKLLSPE 278 (494)
Q Consensus 201 a~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~--~~~l~~~~~iViDEah~~~~~~ 278 (494)
..++.+.+..++..+|+.+.+-+|+++..+..+...+++||+++||+.|.-++... ...|.++.+||+||+|.+.+..
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 99999999999999999999999999999988888999999999999998766542 3458899999999999988766
Q ss_pred cHHHHHHHHHH---CCCCCcEEEEEeecCcchHHHHHhhcCCC---eEEEecccccccceeEEEEe-------ehhhhHH
Q 011079 279 FQPSVEQLIRF---LPANRQILMFSATFPVTVKDFKDKYLQKP---YVINLMDELTLKGITQYYAF-------VEERQKV 345 (494)
Q Consensus 279 ~~~~~~~~~~~---~~~~~~~i~~SATl~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-------~~~~~k~ 345 (494)
.+..+.-.+.+ +..+.|.|++|||.. +..+..+...... .++.+..... ..+.-.... .......
T Consensus 166 RG~~Lsl~LeRL~~l~~~~qRIGLSATV~-~~~~varfL~g~~~~~~Iv~~~~~k~-~~i~v~~p~~~~~~~~~~~~~~~ 243 (814)
T COG1201 166 RGVQLALSLERLRELAGDFQRIGLSATVG-PPEEVAKFLVGFGDPCEIVDVSAAKK-LEIKVISPVEDLIYDEELWAALY 243 (814)
T ss_pred cchhhhhhHHHHHhhCcccEEEeehhccC-CHHHHHHHhcCCCCceEEEEcccCCc-ceEEEEecCCccccccchhHHHH
Confidence 55444433322 223899999999986 3334433333332 2333222111 111111110 1112345
Q ss_pred HHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcC-CcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCC
Q 011079 346 HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELG-YSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQ 424 (494)
Q Consensus 346 ~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~ 424 (494)
..+..+++++ ..+|||+||+..++.++..|++.+ ..+..+||+++.+.|..+.++|++|+.+++|||..++-|||+.
T Consensus 244 ~~i~~~v~~~--~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG 321 (814)
T COG1201 244 ERIAELVKKH--RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIG 321 (814)
T ss_pred HHHHHHHhhc--CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccC
Confidence 5566666554 389999999999999999999987 8899999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCCHHHHHHHhccccC-CCCcceEEEEecc-cchHHH-HHHHHHhCCCCc
Q 011079 425 AVNVVINFDFPKNSETYLHRVGRSGR-FGHLGLAVNLITY-EDRFNL-YRIEQELGTEIK 481 (494)
Q Consensus 425 ~v~~VI~~~~p~s~~~~~Qr~GRagR-~g~~g~~~~l~~~-~~~~~~-~~l~~~~~~~~~ 481 (494)
+++.||+++.|.+++.++||+||+|+ .|...+.+.+... +|...- .-....+.-.++
T Consensus 322 ~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le 381 (814)
T COG1201 322 DIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLE 381 (814)
T ss_pred CceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcc
Confidence 99999999999999999999999995 5655666665554 233322 223344444444
No 53
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=5.3e-42 Score=374.25 Aligned_cols=316 Identities=22% Similarity=0.240 Sum_probs=250.0
Q ss_pred HHHHH-HHHCCCCCCcHHHHHHHHHHhcC------CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHH
Q 011079 130 ELLMG-IFEKGFERPSPIQEESIPIALTG------SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELAL 202 (494)
Q Consensus 130 ~l~~~-l~~~~~~~~~~~Q~~~i~~~~~~------~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~ 202 (494)
...+. .....| .|++.|.++|+.++.+ +|++++|+||+|||.+|+.+++..+.. +.+++|+|||++||.
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---g~qvlvLvPT~eLA~ 663 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---HKQVAVLVPTTLLAQ 663 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHH
Confidence 34343 455567 7999999999999987 789999999999999998888776543 458999999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEECCCChHHHHHHhc----CCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCC
Q 011079 203 QTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLY----QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE 278 (494)
Q Consensus 203 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~ 278 (494)
|+++.+.+.....++.+..++|+....++...+. ..++|+|+||+.+ .. ...+.++++|||||+|++ +
T Consensus 664 Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~-~v~~~~L~lLVIDEahrf---G 735 (1147)
T PRK10689 664 QHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QS-DVKWKDLGLLIVDEEHRF---G 735 (1147)
T ss_pred HHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hC-CCCHhhCCEEEEechhhc---c
Confidence 9999999877777888888888887766544332 4689999999744 22 334788999999999996 2
Q ss_pred cHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeehh-hhHHHHHHHHHHhcCC
Q 011079 279 FQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEE-RQKVHCLNTLFSKLQI 357 (494)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~ll~~~~~ 357 (494)
+ .....++.++.+.++++||||+.+.+..+....+.++..+....... ..+..+...... ..+...+..+. ..
T Consensus 736 ~--~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r-~~v~~~~~~~~~~~~k~~il~el~---r~ 809 (1147)
T PRK10689 736 V--RHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR-LAVKTFVREYDSLVVREAILREIL---RG 809 (1147)
T ss_pred h--hHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCC-CCceEEEEecCcHHHHHHHHHHHh---cC
Confidence 2 23455677788999999999988887777777787887766543221 223333222222 12333333332 45
Q ss_pred CcEEEEecChhHHHHHHHHHHHc--CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCC
Q 011079 358 NQSIIFCNSVNRVELLAKKITEL--GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFP 435 (494)
Q Consensus 358 ~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p 435 (494)
++++|||++++.++.+++.|.+. +..+..+||+|++.+|.+++..|++|+.+|||||+++++|||+|++++||..+..
T Consensus 810 gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad 889 (1147)
T PRK10689 810 GQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD 889 (1147)
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCC
Confidence 79999999999999999999987 7889999999999999999999999999999999999999999999999955442
Q ss_pred -CCHHHHHHHhccccCCCCcceEEEEecc
Q 011079 436 -KNSETYLHRVGRSGRFGHLGLAVNLITY 463 (494)
Q Consensus 436 -~s~~~~~Qr~GRagR~g~~g~~~~l~~~ 463 (494)
.+..+|+||+||+||.|+.|.||+++..
T Consensus 890 ~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 890 HFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred CCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 4667899999999999999999999864
No 54
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.7e-43 Score=344.44 Aligned_cols=309 Identities=16% Similarity=0.215 Sum_probs=233.9
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEE
Q 011079 143 PSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVT 222 (494)
Q Consensus 143 ~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~ 222 (494)
.+.+-.+.+..+..++.+||.|+||||||++....+.+.-..... .+.+..|+|..|..+ +++++.+++..++..
T Consensus 52 I~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g--~I~~TQPRRVAavsl---A~RVAeE~~~~lG~~ 126 (674)
T KOG0922|consen 52 IYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSG--KIACTQPRRVAAVSL---AKRVAEEMGCQLGEE 126 (674)
T ss_pred HHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCC--cEEeecCchHHHHHH---HHHHHHHhCCCcCce
Confidence 344555666677777779999999999999976666665443322 356666999999554 445555555555556
Q ss_pred ECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEeccccc--ccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 011079 223 TGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADK--LLSPEFQPSVEQLIRFLPANRQILMFS 300 (494)
Q Consensus 223 ~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~--~~~~~~~~~~~~~~~~~~~~~~~i~~S 300 (494)
+|....+++... ..+.|.|+|.|.|++.+..+.. |+++++||+||||+ +..+-....++++++.. ++.++|+||
T Consensus 127 VGY~IRFed~ts--~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R-~~LklIimS 202 (674)
T KOG0922|consen 127 VGYTIRFEDSTS--KDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERSLHTDILLGLLKKILKKR-PDLKLIIMS 202 (674)
T ss_pred eeeEEEecccCC--CceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhhhHHHHHHHHHHHHHhcC-CCceEEEEe
Confidence 666666655444 5789999999999998877665 99999999999995 43444566677777666 568999999
Q ss_pred eecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeeh-hh---hHHHHHHHHHHhcCCCcEEEEecChhHHHHHHHH
Q 011079 301 ATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVE-ER---QKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKK 376 (494)
Q Consensus 301 ATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~ 376 (494)
||+. .+.|...|.+ ..++.+.+...+..+ +|...+ .+ ..+..+..+....++|.+|||++++++++.+++.
T Consensus 203 ATld--a~kfS~yF~~-a~i~~i~GR~fPVei--~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~ 277 (674)
T KOG0922|consen 203 ATLD--AEKFSEYFNN-APILTIPGRTFPVEI--LYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACEL 277 (674)
T ss_pred eeec--HHHHHHHhcC-CceEeecCCCCceeE--EeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHH
Confidence 9987 5555555544 445555544332222 222222 22 2345555666677899999999999999999999
Q ss_pred HHHc----C----CcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCC--------------
Q 011079 377 ITEL----G----YSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF-------------- 434 (494)
Q Consensus 377 L~~~----~----~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~-------------- 434 (494)
|.+. . .-+.++||.|+.+++.++|+..+.|.++|++|||+++++|+|+++.+||+.++
T Consensus 278 l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~ 357 (674)
T KOG0922|consen 278 LRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDS 357 (674)
T ss_pred HHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccc
Confidence 9875 1 13578999999999999999999999999999999999999999999998766
Q ss_pred ----CCCHHHHHHHhccccCCCCcceEEEEecccch
Q 011079 435 ----PKNSETYLHRVGRSGRFGHLGLAVNLITYEDR 466 (494)
Q Consensus 435 ----p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~ 466 (494)
|.|.++..||+|||||+| +|+||+||++++.
T Consensus 358 L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 358 LIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY 392 (674)
T ss_pred eeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH
Confidence 569999999999999997 8999999998754
No 55
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.2e-40 Score=352.08 Aligned_cols=317 Identities=21% Similarity=0.239 Sum_probs=236.6
Q ss_pred HHHHHHHH-HCCCCCCcHHHHHHHHHHhcC------CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHH
Q 011079 129 RELLMGIF-EKGFERPSPIQEESIPIALTG------SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELA 201 (494)
Q Consensus 129 ~~l~~~l~-~~~~~~~~~~Q~~~i~~~~~~------~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la 201 (494)
..+.+.+. ..+| .|+++|.++++.+..+ .+.+++|+||||||++|++|++..+.. +.+++|++||++||
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~q~lilaPT~~LA 323 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GYQAALMAPTEILA 323 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEeccHHHH
Confidence 34545444 4466 6999999999999876 379999999999999999999988754 44899999999999
Q ss_pred HHHHHHHHHHhccCCcEEEEEECCCChHHHH---HHhc-CCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCC
Q 011079 202 LQTSQVCKELGKHLNIQVMVTTGGTSLKDDI---MRLY-QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSP 277 (494)
Q Consensus 202 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~-~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~ 277 (494)
.|+++.++++....++++..++|+....+.. ..+. ..++|+|+||+.+.+ ...+.++++||+||+|++.
T Consensus 324 ~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg-- 396 (681)
T PRK10917 324 EQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFG-- 396 (681)
T ss_pred HHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhh--
Confidence 9999999999998899999999998854332 2333 358999999987643 2347889999999999852
Q ss_pred CcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeehhhhHHHHHHHHHHh-cC
Q 011079 278 EFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSK-LQ 356 (494)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~-~~ 356 (494)
......+.......++++||||+.+....+......+...+..... ....+...... ...+...+..+... ..
T Consensus 397 ---~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~-~r~~i~~~~~~--~~~~~~~~~~i~~~~~~ 470 (681)
T PRK10917 397 ---VEQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPP-GRKPITTVVIP--DSRRDEVYERIREEIAK 470 (681)
T ss_pred ---HHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCC-CCCCcEEEEeC--cccHHHHHHHHHHHHHc
Confidence 2233344444556889999999765444333221112222211111 01123222222 22222222222222 24
Q ss_pred CCcEEEEecChh--------HHHHHHHHHHHc--CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCC
Q 011079 357 INQSIIFCNSVN--------RVELLAKKITEL--GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAV 426 (494)
Q Consensus 357 ~~~~lVF~~~~~--------~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v 426 (494)
..+++|||+..+ .++.+++.|.+. ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 471 g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v 550 (681)
T PRK10917 471 GRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNA 550 (681)
T ss_pred CCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCC
Confidence 568999999654 455677777765 4789999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCC-CHHHHHHHhccccCCCCcceEEEEec
Q 011079 427 NVVINFDFPK-NSETYLHRVGRSGRFGHLGLAVNLIT 462 (494)
Q Consensus 427 ~~VI~~~~p~-s~~~~~Qr~GRagR~g~~g~~~~l~~ 462 (494)
++||+++.|. +.+.+.||+||+||.|..|.|+++++
T Consensus 551 ~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 551 TVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred cEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 9999999986 57889999999999999999999995
No 56
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=3.7e-40 Score=346.24 Aligned_cols=316 Identities=21% Similarity=0.258 Sum_probs=233.4
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHhcC------CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHH
Q 011079 131 LLMGIFEKGFERPSPIQEESIPIALTG------SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQT 204 (494)
Q Consensus 131 l~~~l~~~~~~~~~~~Q~~~i~~~~~~------~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~ 204 (494)
+.+.+...+| .|+++|.++++.++.+ .+.+++|+||||||++|+++++..+.. +.+++|++||++||.|+
T Consensus 225 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~qvlilaPT~~LA~Q~ 300 (630)
T TIGR00643 225 LTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GYQVALMAPTEILAEQH 300 (630)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEECCHHHHHHHH
Confidence 3455566788 7999999999999876 258999999999999999999988764 34899999999999999
Q ss_pred HHHHHHHhccCCcEEEEEECCCChHHH---HHHh-cCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcH
Q 011079 205 SQVCKELGKHLNIQVMVTTGGTSLKDD---IMRL-YQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQ 280 (494)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~-~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~ 280 (494)
++.++++....++++..++|+....+. ...+ ...++|+|+||+.+.+ ...+.++++||+||+|++...
T Consensus 301 ~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~--- 372 (630)
T TIGR00643 301 YNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVE--- 372 (630)
T ss_pred HHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHH---
Confidence 999999998889999999999876542 2222 2457999999987753 234788999999999986321
Q ss_pred HHHHHHHHHCC--CCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeehhhhHHHHHHHHHHhc-CC
Q 011079 281 PSVEQLIRFLP--ANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKL-QI 357 (494)
Q Consensus 281 ~~~~~~~~~~~--~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~-~~ 357 (494)
....+..... ..+++++||||+.+....+......+...+..... ....+.... .....+...+..+.... ..
T Consensus 373 -qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~-~r~~i~~~~--~~~~~~~~~~~~i~~~l~~g 448 (630)
T TIGR00643 373 -QRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPP-GRKPITTVL--IKHDEKDIVYEFIEEEIAKG 448 (630)
T ss_pred -HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCC-CCCceEEEE--eCcchHHHHHHHHHHHHHhC
Confidence 1122333332 26789999999765443332211111111111110 011222222 22222222333333332 45
Q ss_pred CcEEEEecChh--------HHHHHHHHHHHc--CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCC
Q 011079 358 NQSIIFCNSVN--------RVELLAKKITEL--GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVN 427 (494)
Q Consensus 358 ~~~lVF~~~~~--------~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~ 427 (494)
.+++|||+..+ .++.+++.|.+. ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+++
T Consensus 449 ~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~ 528 (630)
T TIGR00643 449 RQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNAT 528 (630)
T ss_pred CcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCc
Confidence 68999999764 456677777653 67899999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCC-CHHHHHHHhccccCCCCcceEEEEec
Q 011079 428 VVINFDFPK-NSETYLHRVGRSGRFGHLGLAVNLIT 462 (494)
Q Consensus 428 ~VI~~~~p~-s~~~~~Qr~GRagR~g~~g~~~~l~~ 462 (494)
+||+++.|. +.+.|.||+||+||.|..|.|++++.
T Consensus 529 ~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 529 VMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred EEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 999999986 68889999999999999999999993
No 57
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=8.3e-41 Score=366.46 Aligned_cols=321 Identities=21% Similarity=0.284 Sum_probs=232.4
Q ss_pred EEccCCCchhHHhHHHHHHhhhcC----------CCceEEEEEcCcHHHHHHHHHHHHHHh------------ccCCcEE
Q 011079 162 ARAKNGTGKTAAFCIPALEKIDQD----------NNVIQVVILVPTRELALQTSQVCKELG------------KHLNIQV 219 (494)
Q Consensus 162 i~~~TGsGKT~~~~~~~l~~l~~~----------~~~~~~lil~P~~~la~q~~~~~~~~~------------~~~~~~~ 219 (494)
|++|||||||++|.+|+++.+... ..+.++|||+|+++|+.|+.+.++... ...++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999988643 235689999999999999988776421 1347889
Q ss_pred EEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcC-CccccccceEEecccccccCCCcHH----HHHHHHHHCCCCC
Q 011079 220 MVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG-VCILKDCSMLVMDEADKLLSPEFQP----SVEQLIRFLPANR 294 (494)
Q Consensus 220 ~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~-~~~l~~~~~iViDEah~~~~~~~~~----~~~~~~~~~~~~~ 294 (494)
...+|+++..+....+.++++|+|+||++|..++.+. ...++++++|||||+|.+.+..++. .+..+...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999988877777778999999999998876543 3468999999999999998765444 4445555566789
Q ss_pred cEEEEEeecCcchHHHHHhhcCC--CeEEEecccccccceeEEEEeehhhh---------------------HHHHHHHH
Q 011079 295 QILMFSATFPVTVKDFKDKYLQK--PYVINLMDELTLKGITQYYAFVEERQ---------------------KVHCLNTL 351 (494)
Q Consensus 295 ~~i~~SATl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------k~~~l~~l 351 (494)
|+|++|||+++ ..++. .|+.. +..+..........+.... ...... .......+
T Consensus 161 QrIgLSATI~n-~eevA-~~L~g~~pv~Iv~~~~~r~~~l~v~v-p~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVA-AFLGGDRPVTVVNPPAMRHPQIRIVV-PVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCC-HHHHH-HHhcCCCCEEEECCCCCcccceEEEE-ecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 99999999975 44554 44432 3322211111111121111 111000 00111223
Q ss_pred HHh-cCCCcEEEEecChhHHHHHHHHHHHcC---------------------------------CcEEEEccCCCHHHHH
Q 011079 352 FSK-LQINQSIIFCNSVNRVELLAKKITELG---------------------------------YSCFYIHAKMLQDHRN 397 (494)
Q Consensus 352 l~~-~~~~~~lVF~~~~~~~~~l~~~L~~~~---------------------------------~~~~~~~~~~~~~~r~ 397 (494)
+.. ....++||||||+..|+.++..|++.. +.+..+||+|++++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 322 245789999999999999999997641 1256899999999999
Q ss_pred HHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCC-CCcceEEEEecccc-hH-HHHHHHH
Q 011079 398 RVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRF-GHLGLAVNLITYED-RF-NLYRIEQ 474 (494)
Q Consensus 398 ~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~-g~~g~~~~l~~~~~-~~-~~~~l~~ 474 (494)
.+++.|++|..++||||+.+++||||+++++||+++.|.|+.+|+||+||+||. |..+.++++....+ .. ...-++.
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~r~dlle~~~~ve~ 397 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTRRDLVDSAVIVEC 397 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCcHHHHHhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999996 33344553333222 11 1223667
Q ss_pred HhCCCCccCCc
Q 011079 475 ELGTEIKQIPP 485 (494)
Q Consensus 475 ~~~~~~~~~~~ 485 (494)
.+...+|++..
T Consensus 398 ~l~g~iE~~~~ 408 (1490)
T PRK09751 398 MFAGRLENLTP 408 (1490)
T ss_pred HhcCCCCccCC
Confidence 77777776443
No 58
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-41 Score=330.65 Aligned_cols=310 Identities=18% Similarity=0.255 Sum_probs=238.1
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEE
Q 011079 140 FERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQV 219 (494)
Q Consensus 140 ~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~ 219 (494)
....+++-.+.+.++..++.+||.|+||||||++....+.+.-...++. ++-+..|+|..|..+ +.+++.++|.+.
T Consensus 263 sLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk-~IgcTQPRRVAAmSV---AaRVA~EMgvkL 338 (902)
T KOG0923|consen 263 SLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGK-KIGCTQPRRVAAMSV---AARVAEEMGVKL 338 (902)
T ss_pred cCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCc-eEeecCcchHHHHHH---HHHHHHHhCccc
Confidence 4567888899999999999999999999999999776666654443332 345555999999554 445555566666
Q ss_pred EEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEeccccc-ccC-CCcHHHHHHHHHHCCCCCcEE
Q 011079 220 MVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADK-LLS-PEFQPSVEQLIRFLPANRQIL 297 (494)
Q Consensus 220 ~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~-~~~-~~~~~~~~~~~~~~~~~~~~i 297 (494)
+.-+|.....+++.. ..+-|.|||.|+|++.+... .+|.++++|||||||+ .+. +.+...++.+.+.. ++.+++
T Consensus 339 G~eVGYsIRFEdcTS--ekTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~TDILfgLvKDIar~R-pdLKll 414 (902)
T KOG0923|consen 339 GHEVGYSIRFEDCTS--EKTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLHTDILFGLVKDIARFR-PDLKLL 414 (902)
T ss_pred ccccceEEEeccccC--cceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhC-CcceEE
Confidence 666666777776665 77899999999999977764 4599999999999994 333 44455555555554 789999
Q ss_pred EEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeehhhh-HHHHHHHHHH---hcCCCcEEEEecChhHHHHH
Q 011079 298 MFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQ-KVHCLNTLFS---KLQINQSIIFCNSVNRVELL 373 (494)
Q Consensus 298 ~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~ll~---~~~~~~~lVF~~~~~~~~~l 373 (494)
++|||+. .++| ..|+.+..++.+++..-+ +..+|...++.. -...+..+++ ..+.|.+|||.+++++++..
T Consensus 415 IsSAT~D--AekF-S~fFDdapIF~iPGRRyP--Vdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~ 489 (902)
T KOG0923|consen 415 ISSATMD--AEKF-SAFFDDAPIFRIPGRRYP--VDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETV 489 (902)
T ss_pred eeccccC--HHHH-HHhccCCcEEeccCcccc--eeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHH
Confidence 9999987 4555 445555556666544332 223444444433 3334444443 34779999999999999988
Q ss_pred HHHHHHc---------CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCC----------
Q 011079 374 AKKITEL---------GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF---------- 434 (494)
Q Consensus 374 ~~~L~~~---------~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~---------- 434 (494)
...|.++ .+.++++|+++|++.+.+||+..++|.++|++|||+++++|+|++|.+||+.++
T Consensus 490 ~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprt 569 (902)
T KOG0923|consen 490 KENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRT 569 (902)
T ss_pred HHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCc
Confidence 8887764 456889999999999999999999999999999999999999999999998776
Q ss_pred --------CCCHHHHHHHhccccCCCCcceEEEEecc
Q 011079 435 --------PKNSETYLHRVGRSGRFGHLGLAVNLITY 463 (494)
Q Consensus 435 --------p~s~~~~~Qr~GRagR~g~~g~~~~l~~~ 463 (494)
|.|.++..||+|||||+| ||+||+||+.
T Consensus 570 GmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~ 605 (902)
T KOG0923|consen 570 GMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTA 605 (902)
T ss_pred CceeEEEeeechhhhhhhccccCCCC-CCceEEeech
Confidence 558899999999999998 8999999994
No 59
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=8.4e-41 Score=306.50 Aligned_cols=325 Identities=21% Similarity=0.264 Sum_probs=261.5
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEE
Q 011079 140 FERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQV 219 (494)
Q Consensus 140 ~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~ 219 (494)
.+.++|.|.++|++.+++.++++..|||.||++||.+|+|.. . ..+||+||...|++++.-.++.++ +..
T Consensus 92 lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----d-g~alvi~plislmedqil~lkqlg----i~a 161 (695)
T KOG0353|consen 92 LEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----D-GFALVICPLISLMEDQILQLKQLG----IDA 161 (695)
T ss_pred HHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----C-CceEeechhHHHHHHHHHHHHHhC----cch
Confidence 568899999999999999999999999999999999999864 1 278999999999998888888775 433
Q ss_pred EEEECCCChHHH------HHHhcCCCeEEEEchHHHHHh------HhcCCccccccceEEecccccccCC--CcHHHHHH
Q 011079 220 MVTTGGTSLKDD------IMRLYQPVHLLVGTPGRILDL------SKKGVCILKDCSMLVMDEADKLLSP--EFQPSVEQ 285 (494)
Q Consensus 220 ~~~~g~~~~~~~------~~~~~~~~~Ilv~T~~~l~~~------~~~~~~~l~~~~~iViDEah~~~~~--~~~~~~~~ 285 (494)
..+...++..+. +........++|.||+++... +.+ ......+.+|.+||+|+...+ +|++.+..
T Consensus 162 s~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnklek-a~~~~~~~~iaidevhccsqwghdfr~dy~~ 240 (695)
T KOG0353|consen 162 SMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEK-ALEAGFFKLIAIDEVHCCSQWGHDFRPDYKA 240 (695)
T ss_pred hhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHH-HhhcceeEEEeecceeehhhhCcccCcchHH
Confidence 334333333221 122234678999999988541 222 223566889999999998874 58888775
Q ss_pred H--HHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeehh--hhHHHHHHHHHHhc-CCCcE
Q 011079 286 L--IRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEE--RQKVHCLNTLFSKL-QINQS 360 (494)
Q Consensus 286 ~--~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~k~~~l~~ll~~~-~~~~~ 360 (494)
+ +++.-++..+|+++||.+..+.......+.....+.+...++.+++.......+. ..-.+.+..++... .....
T Consensus 241 l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsg 320 (695)
T KOG0353|consen 241 LGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSG 320 (695)
T ss_pred HHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcc
Confidence 5 5555567889999999999999888888876666677777777777554443332 33445555555443 44578
Q ss_pred EEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCCCHHH
Q 011079 361 IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSET 440 (494)
Q Consensus 361 lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~ 440 (494)
||||-++++|+.++..|...|+.+..||..|.++++..+...|..|++.|+|||-++++|||.|+|++|||.++|+|+++
T Consensus 321 iiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksien 400 (695)
T KOG0353|consen 321 IIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIEN 400 (695)
T ss_pred eEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-------------------------------------------HhccccCCCCcceEEEEecccchHHHHHHHHH
Q 011079 441 YLH-------------------------------------------RVGRSGRFGHLGLAVNLITYEDRFNLYRIEQE 475 (494)
Q Consensus 441 ~~Q-------------------------------------------r~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~ 475 (494)
|+| ..|||||.|.+..|+++|...|.+.....-..
T Consensus 401 yyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~difk~ssmv~~ 478 (695)
T KOG0353|consen 401 YYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKISSMVQM 478 (695)
T ss_pred HHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHHhHHHHHHH
Confidence 999 78999999999999999999887766655433
No 60
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=2.5e-40 Score=356.64 Aligned_cols=305 Identities=18% Similarity=0.270 Sum_probs=212.4
Q ss_pred HHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHH-HHHHHhccCCcEEEEEE
Q 011079 145 PIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQ-VCKELGKHLNIQVMVTT 223 (494)
Q Consensus 145 ~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~-~~~~~~~~~~~~~~~~~ 223 (494)
.+..+.+..+..++.++|+|+||||||++....+++. .. +....+++..|+|..+..++. +..++...+|..+++-+
T Consensus 77 ~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~-g~-g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~v 154 (1294)
T PRK11131 77 QKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLEL-GR-GVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKV 154 (1294)
T ss_pred HHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHc-CC-CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceee
Confidence 3445566666677779999999999999744333332 11 111234444598766655443 22333322333333322
Q ss_pred CCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccc-cccCCCcHHH-HHHHHHHCCCCCcEEEEEe
Q 011079 224 GGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEAD-KLLSPEFQPS-VEQLIRFLPANRQILMFSA 301 (494)
Q Consensus 224 g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah-~~~~~~~~~~-~~~~~~~~~~~~~~i~~SA 301 (494)
. .+. .....++|+|||||+|++++..+.. +.++++||||||| ++++.+|... ++.++... ++.|+|+|||
T Consensus 155 r----f~~--~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~r-pdlKvILmSA 226 (1294)
T PRK11131 155 R----FND--QVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLPRR-PDLKVIITSA 226 (1294)
T ss_pred c----Ccc--ccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhhcC-CCceEEEeeC
Confidence 1 111 1235789999999999998887654 9999999999999 5788887643 44444333 5789999999
Q ss_pred ecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeehh------hhHHHHHHHHHH---hcCCCcEEEEecChhHHHH
Q 011079 302 TFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEE------RQKVHCLNTLFS---KLQINQSIIFCNSVNRVEL 372 (494)
Q Consensus 302 Tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~k~~~l~~ll~---~~~~~~~lVF~~~~~~~~~ 372 (494)
|++ ...+...|.+.| ++.+..... .+..+|..... ...+..+...+. ....+++||||++..+++.
T Consensus 227 Tid--~e~fs~~F~~ap-vI~V~Gr~~--pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~ 301 (1294)
T PRK11131 227 TID--PERFSRHFNNAP-IIEVSGRTY--PVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRD 301 (1294)
T ss_pred CCC--HHHHHHHcCCCC-EEEEcCccc--cceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHH
Confidence 997 456666665555 455543321 23333333221 112222222222 2356899999999999999
Q ss_pred HHHHHHHcCCc---EEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCC---------------
Q 011079 373 LAKKITELGYS---CFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF--------------- 434 (494)
Q Consensus 373 l~~~L~~~~~~---~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~--------------- 434 (494)
+++.|.+.++. +.++||++++++|..+++. .|.++||||||++++|||||+|++|||++.
T Consensus 302 lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~L 379 (1294)
T PRK11131 302 TADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRL 379 (1294)
T ss_pred HHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccC
Confidence 99999987654 7899999999999999986 578999999999999999999999999863
Q ss_pred ---CCCHHHHHHHhccccCCCCcceEEEEecccchH
Q 011079 435 ---PKNSETYLHRVGRSGRFGHLGLAVNLITYEDRF 467 (494)
Q Consensus 435 ---p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~ 467 (494)
|.|.++|.||+|||||. .+|.||.||++++..
T Consensus 380 p~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 380 PIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred CeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 35778999999999999 589999999987654
No 61
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=3e-40 Score=348.35 Aligned_cols=331 Identities=22% Similarity=0.252 Sum_probs=265.8
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHh
Q 011079 133 MGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELG 212 (494)
Q Consensus 133 ~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~ 212 (494)
......|...+++-|.++|..++.|+|+++.+|||.||++||++|++-. +...|||.|..+|+.++...+.
T Consensus 255 ~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------~gitvVISPL~SLm~DQv~~L~--- 325 (941)
T KOG0351|consen 255 LLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------GGVTVVISPLISLMQDQVTHLS--- 325 (941)
T ss_pred HHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------CCceEEeccHHHHHHHHHHhhh---
Confidence 3334568889999999999999999999999999999999999999864 2267999999999977666553
Q ss_pred ccCCcEEEEEECCCChHHHH---HHhc---CCCeEEEEchHHHHHh--HhcCCccccc---cceEEecccccccCC--Cc
Q 011079 213 KHLNIQVMVTTGGTSLKDDI---MRLY---QPVHLLVGTPGRILDL--SKKGVCILKD---CSMLVMDEADKLLSP--EF 279 (494)
Q Consensus 213 ~~~~~~~~~~~g~~~~~~~~---~~~~---~~~~Ilv~T~~~l~~~--~~~~~~~l~~---~~~iViDEah~~~~~--~~ 279 (494)
..++....+.++....+.. ..+. ...+|+|.||+++... +......+.. +.++||||||+++.+ +|
T Consensus 326 -~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdF 404 (941)
T KOG0351|consen 326 -KKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDF 404 (941)
T ss_pred -hcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccc
Confidence 3457777777777664322 2222 2579999999998652 2222223444 899999999999874 59
Q ss_pred HHHHHHHHH--HCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeehh-hhHHHHHHHHHHhcC
Q 011079 280 QPSVEQLIR--FLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEE-RQKVHCLNTLFSKLQ 356 (494)
Q Consensus 280 ~~~~~~~~~--~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~ll~~~~ 356 (494)
++.++.+.. ...+...+|.+|||.+..+.+.+-..++-.....+...+..+++...+..... ..-...+..+-..++
T Consensus 405 Rp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~ 484 (941)
T KOG0351|consen 405 RPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEESKLRHP 484 (941)
T ss_pred cHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCccchHHHHHHhhhcCC
Confidence 999888743 22345789999999998888888777765555555666777777555444432 223334444444557
Q ss_pred CCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCC
Q 011079 357 INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPK 436 (494)
Q Consensus 357 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~ 436 (494)
...+||||.++.+|+.++..|...++.+..||++|++.+|..+.+.|..++.+|+|||-++++|||.|||+.||||++|+
T Consensus 485 ~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPk 564 (941)
T KOG0351|consen 485 DQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPK 564 (941)
T ss_pred CCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCch
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhccccCCCCcceEEEEecccchHHHHHHH
Q 011079 437 NSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE 473 (494)
Q Consensus 437 s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~ 473 (494)
|.+.|+|.+|||||+|.+..|++||+..|...+..+.
T Consensus 565 s~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll 601 (941)
T KOG0351|consen 565 SFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLL 601 (941)
T ss_pred hHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHH
Confidence 9999999999999999999999999999877666654
No 62
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.4e-40 Score=346.64 Aligned_cols=323 Identities=17% Similarity=0.234 Sum_probs=237.9
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEE
Q 011079 144 SPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTT 223 (494)
Q Consensus 144 ~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~ 223 (494)
+....+.+.++.+++.+||+||||||||++..+.+++... ..+..+.+.-|+|..|..++ ++++..++.+++..+
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA---~RvAeel~~~~G~~V 126 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVA---ERVAEELGEKLGETV 126 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHH---HHHHHHhCCCcCcee
Confidence 3444555666667777999999999999998888887765 22235666669998885554 444444555555555
Q ss_pred CCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEeccccc-ccCCCc-HHHHHHHHHHCCCCCcEEEEEe
Q 011079 224 GGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADK-LLSPEF-QPSVEQLIRFLPANRQILMFSA 301 (494)
Q Consensus 224 g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~-~~~~~~-~~~~~~~~~~~~~~~~~i~~SA 301 (494)
|.....+... ...+.|.|+|.|.|++++..+.. |+.+++||+||+|+ .++.++ ...++.++..++++.++|+|||
T Consensus 127 GY~iRfe~~~--s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSA 203 (845)
T COG1643 127 GYSIRFESKV--SPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSA 203 (845)
T ss_pred eEEEEeeccC--CCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 5555554433 36789999999999999998766 99999999999994 555444 4556666888888899999999
Q ss_pred ecCcchHHHHHhhcCCCeEEEecccccccceeEEE-Eeehhhh-HHHHHH---HHHHhcCCCcEEEEecChhHHHHHHHH
Q 011079 302 TFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYY-AFVEERQ-KVHCLN---TLFSKLQINQSIIFCNSVNRVELLAKK 376 (494)
Q Consensus 302 Tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-k~~~l~---~ll~~~~~~~~lVF~~~~~~~~~l~~~ 376 (494)
|+. ...|... +.+..++.+....-+.. .+| ....... -...+. .+......|.+|||+++.++++.+++.
T Consensus 204 Tld--~~rfs~~-f~~apvi~i~GR~fPVe--i~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~ 278 (845)
T COG1643 204 TLD--AERFSAY-FGNAPVIEIEGRTYPVE--IRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEW 278 (845)
T ss_pred ccC--HHHHHHH-cCCCCEEEecCCccceE--EEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHH
Confidence 987 4555554 44444555544332222 222 1121222 222333 333344678999999999999999999
Q ss_pred HHH----cCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCC------------------
Q 011079 377 ITE----LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF------------------ 434 (494)
Q Consensus 377 L~~----~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~------------------ 434 (494)
|.+ ..+.+.++||.|+.+++.++|+....|.++|++|||++++||+|++|++||+.+.
T Consensus 279 L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~ 358 (845)
T COG1643 279 LEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETE 358 (845)
T ss_pred HHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEE
Confidence 998 3578999999999999999999999999999999999999999999999998665
Q ss_pred CCCHHHHHHHhccccCCCCcceEEEEecccchHHH--HHHHHHhCCCC
Q 011079 435 PKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNL--YRIEQELGTEI 480 (494)
Q Consensus 435 p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~--~~l~~~~~~~~ 480 (494)
|.|.++..||.|||||.+ +|.||.||++++...+ ...++++++.+
T Consensus 359 ~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~~~~~~t~PEIlrtdL 405 (845)
T COG1643 359 PISKASADQRAGRAGRTG-PGICYRLYSEEDFLAFPEFTLPEILRTDL 405 (845)
T ss_pred EechhhhhhhccccccCC-CceEEEecCHHHHHhcccCCChhhhhcch
Confidence 558999999999999996 8999999998654322 23445555544
No 63
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-40 Score=324.04 Aligned_cols=308 Identities=19% Similarity=0.263 Sum_probs=232.9
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCc
Q 011079 140 FERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNI 217 (494)
Q Consensus 140 ~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~ 217 (494)
+...+..+.+.+..+..++.+||+|+||||||++.. ++|.+.+.+...+|.| |+|..|.. ++++++.+++.
T Consensus 354 ~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~----QyL~edGY~~~GmIGcTQPRRvAAiS---VAkrVa~EM~~ 426 (1042)
T KOG0924|consen 354 YLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLA----QYLYEDGYADNGMIGCTQPRRVAAIS---VAKRVAEEMGV 426 (1042)
T ss_pred hcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhH----HHHHhcccccCCeeeecCchHHHHHH---HHHHHHHHhCC
Confidence 567778888999999999999999999999999944 4444445444456666 99999954 55555566666
Q ss_pred EEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEeccccc-ccC-CCcHHHHHHHHHHCCCCCc
Q 011079 218 QVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADK-LLS-PEFQPSVEQLIRFLPANRQ 295 (494)
Q Consensus 218 ~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~-~~~-~~~~~~~~~~~~~~~~~~~ 295 (494)
.++..+|....+++.+. ..+.|.|+|.|.|++....+. .|.++++||+||||+ -++ +.....++.++... .+.+
T Consensus 427 ~lG~~VGYsIRFEdvT~--~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~larR-rdlK 502 (1042)
T KOG0924|consen 427 TLGDTVGYSIRFEDVTS--EDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLARR-RDLK 502 (1042)
T ss_pred ccccccceEEEeeecCC--CceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHHhh-ccce
Confidence 66666677777766655 678999999999999666554 488999999999995 333 33455666666665 5899
Q ss_pred EEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeehhhh-HHHHHHHHH---HhcCCCcEEEEecChhHHH
Q 011079 296 ILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQ-KVHCLNTLF---SKLQINQSIIFCNSVNRVE 371 (494)
Q Consensus 296 ~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~ll---~~~~~~~~lVF~~~~~~~~ 371 (494)
+|++|||+. ..+|...|-+.|. +.++...-+..+ .+...+... ....+...+ ...+.|.+|||.++++.++
T Consensus 503 liVtSATm~--a~kf~nfFgn~p~-f~IpGRTyPV~~--~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE 577 (1042)
T KOG0924|consen 503 LIVTSATMD--AQKFSNFFGNCPQ-FTIPGRTYPVEI--MYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIE 577 (1042)
T ss_pred EEEeecccc--HHHHHHHhCCCce-eeecCCccceEE--EeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchh
Confidence 999999987 6666665554554 444433322222 222222222 222222322 2336689999999999888
Q ss_pred HHHHHHHHc----------CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCC-------
Q 011079 372 LLAKKITEL----------GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF------- 434 (494)
Q Consensus 372 ~l~~~L~~~----------~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~------- 434 (494)
..+..+... ++.++++|+.|++..+.++|.....|.++|+||||+++++++||++.+||+.++
T Consensus 578 ~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn 657 (1042)
T KOG0924|consen 578 CTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYN 657 (1042)
T ss_pred HHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecc
Confidence 777766552 578999999999999999999999999999999999999999999999998766
Q ss_pred -----------CCCHHHHHHHhccccCCCCcceEEEEeccc
Q 011079 435 -----------PKNSETYLHRVGRSGRFGHLGLAVNLITYE 464 (494)
Q Consensus 435 -----------p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~ 464 (494)
|.|.++..||+|||||+| ||.||.+|++.
T Consensus 658 ~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 658 PRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred cccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 779999999999999997 89999999973
No 64
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=8.2e-39 Score=346.22 Aligned_cols=303 Identities=18% Similarity=0.237 Sum_probs=216.1
Q ss_pred HHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCC
Q 011079 148 EESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTS 227 (494)
Q Consensus 148 ~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~ 227 (494)
.+.+..+..++.+||+|+||||||++....+++.- .+....+++..|+|..|..++. +++..++..++..+|+..
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~--~~~~~~I~~tQPRRlAA~svA~---RvA~elg~~lG~~VGY~v 147 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQLPKICLELG--RGSHGLIGHTQPRRLAARTVAQ---RIAEELGTPLGEKVGYKV 147 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcC--CCCCceEecCCccHHHHHHHHH---HHHHHhCCCcceEEeeEE
Confidence 45555666667799999999999998655554421 1222245556699998866654 333333444444555433
Q ss_pred hHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccc-cccCCCcHHH-HHHHHHHCCCCCcEEEEEeecCc
Q 011079 228 LKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEAD-KLLSPEFQPS-VEQLIRFLPANRQILMFSATFPV 305 (494)
Q Consensus 228 ~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah-~~~~~~~~~~-~~~~~~~~~~~~~~i~~SATl~~ 305 (494)
..+.. ....+.|+|+|+|+|++.+..+. .+.++++||||||| ++++.+|... ++.++... ++.|+|+||||++
T Consensus 148 R~~~~--~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r-pdLKlIlmSATld- 222 (1283)
T TIGR01967 148 RFHDQ--VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR-PDLKIIITSATID- 222 (1283)
T ss_pred cCCcc--cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-CCCeEEEEeCCcC-
Confidence 22221 13578999999999999887765 48999999999999 5888777654 56665554 5789999999997
Q ss_pred chHHHHHhhcCCCeEEEecccccccceeEEEEeehh------hhHHHHHHHHHH---hcCCCcEEEEecChhHHHHHHHH
Q 011079 306 TVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEE------RQKVHCLNTLFS---KLQINQSIIFCNSVNRVELLAKK 376 (494)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~k~~~l~~ll~---~~~~~~~lVF~~~~~~~~~l~~~ 376 (494)
...+...|...| ++.+..... .+..+|..... ..+...+...+. ....+++|||+++..+++.+++.
T Consensus 223 -~~~fa~~F~~ap-vI~V~Gr~~--PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~ 298 (1283)
T TIGR01967 223 -PERFSRHFNNAP-IIEVSGRTY--PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEI 298 (1283)
T ss_pred -HHHHHHHhcCCC-EEEECCCcc--cceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHH
Confidence 456666665544 444443221 12223322211 122232322222 22568999999999999999999
Q ss_pred HHHcC---CcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCC------------------C
Q 011079 377 ITELG---YSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF------------------P 435 (494)
Q Consensus 377 L~~~~---~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~------------------p 435 (494)
|.+.+ +.+.++||.|++++|.++|+.+ +..+||||||++++|||||+|++||+++. |
T Consensus 299 L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ 376 (1283)
T TIGR01967 299 LRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEP 376 (1283)
T ss_pred HHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCcc
Confidence 99864 4589999999999999997764 35799999999999999999999999985 3
Q ss_pred CCHHHHHHHhccccCCCCcceEEEEecccchH
Q 011079 436 KNSETYLHRVGRSGRFGHLGLAVNLITYEDRF 467 (494)
Q Consensus 436 ~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~ 467 (494)
.|.++|.||+|||||.| +|.||.||++.+..
T Consensus 377 ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 377 ISQASANQRKGRCGRVA-PGICIRLYSEEDFN 407 (1283)
T ss_pred CCHHHHHHHhhhhCCCC-CceEEEecCHHHHH
Confidence 47789999999999997 99999999987654
No 65
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=9.5e-38 Score=318.17 Aligned_cols=317 Identities=20% Similarity=0.170 Sum_probs=244.3
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEE
Q 011079 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~ 221 (494)
.|+++|..+++.++.|+ |+.+.||+|||++|.+|++..... +..++|++||++||.|.++++..+...+++++++
T Consensus 103 ~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~---G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~ 177 (656)
T PRK12898 103 RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA---GLPVHVITVNDYLAERDAELMRPLYEALGLTVGC 177 (656)
T ss_pred CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc---CCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEE
Confidence 78999999999999999 999999999999999999987654 3489999999999999999999999999999999
Q ss_pred EECCCChHHHHHHhcCCCeEEEEchHHH-HHhHhcC-------------------------CccccccceEEeccccccc
Q 011079 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRI-LDLSKKG-------------------------VCILKDCSMLVMDEADKLL 275 (494)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~-------------------------~~~l~~~~~iViDEah~~~ 275 (494)
++|+.+.. .+....+++|+|+|...| .++++.. ......+.+.||||+|.++
T Consensus 178 i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiL 255 (656)
T PRK12898 178 VVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVL 255 (656)
T ss_pred EeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeeccccee
Confidence 99997643 334446789999999876 3333322 1224567899999999864
Q ss_pred -C--------------C---CcHHHHHHHHHHC-----------------------------------------------
Q 011079 276 -S--------------P---EFQPSVEQLIRFL----------------------------------------------- 290 (494)
Q Consensus 276 -~--------------~---~~~~~~~~~~~~~----------------------------------------------- 290 (494)
+ . .+......+...+
T Consensus 256 iDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~i~ 335 (656)
T PRK12898 256 IDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREELVR 335 (656)
T ss_pred eccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHHHHHH
Confidence 0 0 0000000000000
Q ss_pred ---------C-------------------------------------------------------------CCCcEEEEE
Q 011079 291 ---------P-------------------------------------------------------------ANRQILMFS 300 (494)
Q Consensus 291 ---------~-------------------------------------------------------------~~~~~i~~S 300 (494)
. .-.++.+||
T Consensus 336 ~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmT 415 (656)
T PRK12898 336 QALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMT 415 (656)
T ss_pred HHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhccc
Confidence 0 001567899
Q ss_pred eecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeehhhhHHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHH
Q 011079 301 ATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKIT 378 (494)
Q Consensus 301 ATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~ 378 (494)
||++....++...|..++..+....... ....+.+.+.+...|...|..++... ...++||||++++.++.+++.|.
T Consensus 416 GTa~~~~~El~~~y~l~vv~IPt~kp~~-r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~ 494 (656)
T PRK12898 416 GTAREVAGELWSVYGLPVVRIPTNRPSQ-RRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLR 494 (656)
T ss_pred CcChHHHHHHHHHHCCCeEEeCCCCCcc-ceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHH
Confidence 9988777778777777765544433222 22333445566777888888888664 25689999999999999999999
Q ss_pred HcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCC---CCC-----EEEEcCCCCCHHHHHHHhccccC
Q 011079 379 ELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQ---AVN-----VVINFDFPKNSETYLHRVGRSGR 450 (494)
Q Consensus 379 ~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~---~v~-----~VI~~~~p~s~~~~~Qr~GRagR 450 (494)
+.++.+..+||.++ +++..+..+..+...|+||||+++||+||+ +|. +||+++.|.|...|.||+||+||
T Consensus 495 ~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGR 572 (656)
T PRK12898 495 EAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGR 572 (656)
T ss_pred HCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccC
Confidence 99999999999865 445555556656667999999999999999 666 99999999999999999999999
Q ss_pred CCCcceEEEEecccchHH
Q 011079 451 FGHLGLAVNLITYEDRFN 468 (494)
Q Consensus 451 ~g~~g~~~~l~~~~~~~~ 468 (494)
.|.+|.|+.|++.+|...
T Consensus 573 qG~~G~s~~~is~eD~l~ 590 (656)
T PRK12898 573 QGDPGSYEAILSLEDDLL 590 (656)
T ss_pred CCCCeEEEEEechhHHHH
Confidence 999999999999876543
No 66
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=4.1e-38 Score=351.28 Aligned_cols=328 Identities=20% Similarity=0.175 Sum_probs=248.4
Q ss_pred HHHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHH
Q 011079 130 ELLMGIFE-KGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVC 208 (494)
Q Consensus 130 ~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~ 208 (494)
++.+.+++ .|| .|+++|.++++.++.|+|+++.||||||||++++++++.... .+.++|||+||++|+.|+.+.+
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~---~g~~aLVl~PTreLa~Qi~~~l 142 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL---KGKKCYIILPTTLLVKQTVEKI 142 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh---cCCeEEEEECHHHHHHHHHHHH
Confidence 34455554 689 699999999999999999999999999999976665554422 2458999999999999999999
Q ss_pred HHHhccC--CcEEEEEECCCChHHHH---HHhc-CCCeEEEEchHHHHHhHhcCCccccccceEEecccccccC------
Q 011079 209 KELGKHL--NIQVMVTTGGTSLKDDI---MRLY-QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS------ 276 (494)
Q Consensus 209 ~~~~~~~--~~~~~~~~g~~~~~~~~---~~~~-~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~------ 276 (494)
+.++..+ ++.+..++|+.+..++. ..+. ..++|+|+||+.|.+.+... . ..++++||+||||+|+.
T Consensus 143 ~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml~~~knid 220 (1638)
T PRK14701 143 ESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFLKASKNID 220 (1638)
T ss_pred HHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceeccccccccc
Confidence 9988765 45667788887766543 2233 35899999999988765532 1 26799999999999975
Q ss_pred -----CCcHHHHHH----HHH----------------------HCCCCCc-EEEEEeecCcchHHHHHhhcCCCeEEEec
Q 011079 277 -----PEFQPSVEQ----LIR----------------------FLPANRQ-ILMFSATFPVTVKDFKDKYLQKPYVINLM 324 (494)
Q Consensus 277 -----~~~~~~~~~----~~~----------------------~~~~~~~-~i~~SATl~~~~~~~~~~~~~~~~~~~~~ 324 (494)
.+|.+.+.. ++. .++...+ ++++|||++.. .....++..+..+.+.
T Consensus 221 ~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~~~~~l~~~~l~f~v~ 298 (1638)
T PRK14701 221 RSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--GDRVKLYRELLGFEVG 298 (1638)
T ss_pred hhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--hHHHHHhhcCeEEEec
Confidence 478777764 321 2344555 56799999853 1122333455444443
Q ss_pred c-cccccceeEEEEeehhhhHHHHHHHHHHhcCCCcEEEEecChhH---HHHHHHHHHHcCCcEEEEccCCCHHHHHHHH
Q 011079 325 D-ELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNR---VELLAKKITELGYSCFYIHAKMLQDHRNRVF 400 (494)
Q Consensus 325 ~-~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~---~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~ 400 (494)
. .....++.+.+...+...+ ..+..++... ...+||||++++. |+.+++.|.+.|+++..+||+ |..++
T Consensus 299 ~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l 371 (1638)
T PRK14701 299 SGRSALRNIVDVYLNPEKIIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGF 371 (1638)
T ss_pred CCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHH
Confidence 2 2334566666665554444 4677777666 4679999999875 589999999999999999995 88999
Q ss_pred HHhhcCCccEEEEc----CcccccCCCCC-CCEEEEcCCCC---CHHHHHHHh-------------ccccCCCCcceEEE
Q 011079 401 HDFRNGACRNLVCT----DLFTRGIDIQA-VNVVINFDFPK---NSETYLHRV-------------GRSGRFGHLGLAVN 459 (494)
Q Consensus 401 ~~f~~g~~~vlvaT----~~~~~Gidi~~-v~~VI~~~~p~---s~~~~~Qr~-------------GRagR~g~~g~~~~ 459 (494)
+.|++|+.+||||| ++++||||+|+ |++|||+|+|. +.+.|.|.. ||+||.|.++.|+.
T Consensus 372 ~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~ 451 (1638)
T PRK14701 372 DLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVL 451 (1638)
T ss_pred HHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHH
Confidence 99999999999999 58999999999 99999999999 888776665 99999999988886
Q ss_pred EecccchHHHHHH
Q 011079 460 LITYEDRFNLYRI 472 (494)
Q Consensus 460 l~~~~~~~~~~~l 472 (494)
.+...+...+.++
T Consensus 452 ~~~~~~~~~~~~~ 464 (1638)
T PRK14701 452 DVFPEDVEFLRSI 464 (1638)
T ss_pred HhHHHHHHHHHHH
Confidence 6665554444443
No 67
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.2e-38 Score=299.22 Aligned_cols=320 Identities=24% Similarity=0.299 Sum_probs=238.7
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEE
Q 011079 140 FERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQV 219 (494)
Q Consensus 140 ~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~ 219 (494)
.-+++.||......++.+ +++|+.|||-|||+.+.+-+..++...+. ++|+++||+.|+.|.++.|.++..-..-.+
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~--kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i 89 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGG--KVLFLAPTKPLVLQHAEFCRKVTGIPEDEI 89 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCC--eEEEecCCchHHHHHHHHHHHHhCCChhhe
Confidence 447889999998888877 79999999999999998888888876554 799999999999999999999987666678
Q ss_pred EEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEE
Q 011079 220 MVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMF 299 (494)
Q Consensus 220 ~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (494)
..++|..... .....+...+|+|+||+.+.+-+..+..++.++++||+||||+-..+.-...+.+......+++.+++|
T Consensus 90 ~~ltGev~p~-~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgL 168 (542)
T COG1111 90 AALTGEVRPE-EREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGL 168 (542)
T ss_pred eeecCCCChH-HHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEE
Confidence 8888776544 334455778999999999999899999999999999999999865433333344444444577889999
Q ss_pred EeecCcch---------------------------------------------HHHHH---hh-------cCCCeEEEec
Q 011079 300 SATFPVTV---------------------------------------------KDFKD---KY-------LQKPYVINLM 324 (494)
Q Consensus 300 SATl~~~~---------------------------------------------~~~~~---~~-------~~~~~~~~~~ 324 (494)
|||+..+. .+... .. +.+..++...
T Consensus 169 TASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~ 248 (542)
T COG1111 169 TASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESS 248 (542)
T ss_pred ecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceecc
Confidence 99951111 10000 00 0000000000
Q ss_pred ccccc--------------c-----------------------------ceeEEEE------------------------
Q 011079 325 DELTL--------------K-----------------------------GITQYYA------------------------ 337 (494)
Q Consensus 325 ~~~~~--------------~-----------------------------~~~~~~~------------------------ 337 (494)
..... . ++..++.
T Consensus 249 ~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~ 328 (542)
T COG1111 249 SPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADP 328 (542)
T ss_pred CcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcCh
Confidence 00000 0 0000000
Q ss_pred --------------eehhhhHHHHHHHHHHh----cCCCcEEEEecChhHHHHHHHHHHHcCCcEE-EEc--------cC
Q 011079 338 --------------FVEERQKVHCLNTLFSK----LQINQSIIFCNSVNRVELLAKKITELGYSCF-YIH--------AK 390 (494)
Q Consensus 338 --------------~~~~~~k~~~l~~ll~~----~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~-~~~--------~~ 390 (494)
..-...|+..+..++.. ....++|||++.++.++.+.+.|.+.+..+. .+- .+
T Consensus 329 ~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~G 408 (542)
T COG1111 329 YFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKG 408 (542)
T ss_pred hhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccc
Confidence 00011244445555443 3456999999999999999999999987774 332 46
Q ss_pred CCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEeccc
Q 011079 391 MLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYE 464 (494)
Q Consensus 391 ~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~ 464 (494)
|++.++.++++.|++|.+.|||||+++++|+|||.+++||+|++..|...++||.||+||. ++|.+|+|++++
T Consensus 409 MsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 409 MSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred cCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999998 789999999976
No 68
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.7e-39 Score=300.68 Aligned_cols=328 Identities=20% Similarity=0.257 Sum_probs=240.6
Q ss_pred HHHHHHHC-CCCC-CcHHHHHHHHHHhcC-CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHH
Q 011079 131 LLMGIFEK-GFER-PSPIQEESIPIALTG-SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQV 207 (494)
Q Consensus 131 l~~~l~~~-~~~~-~~~~Q~~~i~~~~~~-~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~ 207 (494)
+.++|++. |+.. -++.|+.|+..+..+ +|+++++|||+||++||.+|+|.. .+ ..||+.|..+|..++.+.
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----~g-ITIV~SPLiALIkDQiDH 80 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----GG-ITIVISPLIALIKDQIDH 80 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----CC-eEEEehHHHHHHHHHHHH
Confidence 44455443 5554 368999999998876 589999999999999999999875 12 679999999999998888
Q ss_pred HHHHhccCCcEEEEEECCCCh--H----HHHHHhcCCCeEEEEchHHHHH-----hHhcCCccccccceEEecccccccC
Q 011079 208 CKELGKHLNIQVMVTTGGTSL--K----DDIMRLYQPVHLLVGTPGRILD-----LSKKGVCILKDCSMLVMDEADKLLS 276 (494)
Q Consensus 208 ~~~~~~~~~~~~~~~~g~~~~--~----~~~~~~~~~~~Ilv~T~~~l~~-----~~~~~~~~l~~~~~iViDEah~~~~ 276 (494)
+.++--.. ..+....+. + .+.........++|.||+.... +++. ...-..++++|+||||+++.
T Consensus 81 L~~LKVp~----~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~-L~~r~~L~Y~vVDEAHCVSQ 155 (641)
T KOG0352|consen 81 LKRLKVPC----ESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG-LANRDVLRYIVVDEAHCVSQ 155 (641)
T ss_pred HHhcCCch----hHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH-HhhhceeeeEEechhhhHhh
Confidence 88764322 112111111 1 1122223467899999997432 2222 12234578999999999987
Q ss_pred C--CcHHHHHHH--HHHCCCCCcEEEEEeecCcchHHHHHh--hcCCCeEEEecccccccceeEEEEee--h-hhhHHHH
Q 011079 277 P--EFQPSVEQL--IRFLPANRQILMFSATFPVTVKDFKDK--YLQKPYVINLMDELTLKGITQYYAFV--E-ERQKVHC 347 (494)
Q Consensus 277 ~--~~~~~~~~~--~~~~~~~~~~i~~SATl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~k~~~ 347 (494)
+ +|++++..+ ++..-++...+.+|||.+..+.+.+.. .+.+|..+.-...+. .++ +|... + ..+.+..
T Consensus 156 WGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR-~NL--FYD~~~K~~I~D~~~~ 232 (641)
T KOG0352|consen 156 WGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFR-DNL--FYDNHMKSFITDCLTV 232 (641)
T ss_pred hccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchh-hhh--hHHHHHHHHhhhHhHh
Confidence 5 588988877 333346788999999999888876554 445554332211111 111 11100 0 0111222
Q ss_pred HHHHHHhc-------------CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEc
Q 011079 348 LNTLFSKL-------------QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 414 (494)
Q Consensus 348 l~~ll~~~-------------~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT 414 (494)
|.+...+. ..|-.||||.|+++|++++-.|...|+++..||.++...+|..+.+.|.+++..||+||
T Consensus 233 LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT 312 (641)
T KOG0352|consen 233 LADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAAT 312 (641)
T ss_pred HHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEE
Confidence 33222111 12467999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHH
Q 011079 415 DLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRI 472 (494)
Q Consensus 415 ~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l 472 (494)
..+++|+|.|+|++|||+++|.+.+.|+|..|||||+|.+..|-++|..+|...+..|
T Consensus 313 ~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FL 370 (641)
T KOG0352|consen 313 VSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFL 370 (641)
T ss_pred eccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887666554
No 69
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.1e-37 Score=341.27 Aligned_cols=295 Identities=22% Similarity=0.271 Sum_probs=230.9
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcE
Q 011079 139 GFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQ 218 (494)
Q Consensus 139 ~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~ 218 (494)
|+ .|+++|..+++.++.|++++++||||||||+ |.++++..+.. .+.+++||+||++|+.|+.+.++.++...++.
T Consensus 78 G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~--~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~ 153 (1176)
T PRK09401 78 GS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK--KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCG 153 (1176)
T ss_pred CC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh--cCCeEEEEeccHHHHHHHHHHHHHHhhhcCce
Confidence 66 8999999999999999999999999999997 44555544433 35689999999999999999999999988888
Q ss_pred EEEEECCCCh-----HHHHHHhc-CCCeEEEEchHHHHHhHhcCCccccccceEEecccccccC-----------CCcH-
Q 011079 219 VMVTTGGTSL-----KDDIMRLY-QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS-----------PEFQ- 280 (494)
Q Consensus 219 ~~~~~g~~~~-----~~~~~~~~-~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~-----------~~~~- 280 (494)
+..+.|+... .+....+. ..++|+|+||++|.+++. ......+++||+||||++++ .+|.
T Consensus 154 ~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~ 231 (1176)
T PRK09401 154 VKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSE 231 (1176)
T ss_pred EEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhCCCCH
Confidence 8877776542 22223333 458999999999998776 23456799999999999885 5674
Q ss_pred HHHHHHHHHCCC------------------------CCcEEEEEeecCcc-hHHHHHhhcCCCeEEEecc-cccccceeE
Q 011079 281 PSVEQLIRFLPA------------------------NRQILMFSATFPVT-VKDFKDKYLQKPYVINLMD-ELTLKGITQ 334 (494)
Q Consensus 281 ~~~~~~~~~~~~------------------------~~~~i~~SATl~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 334 (494)
..+..++..++. ..|++++|||+++. +.. .++.++..+.+.. .....++.+
T Consensus 232 ~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~~~rnI~~ 308 (1176)
T PRK09401 232 EDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVFYLRNIVD 308 (1176)
T ss_pred HHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCcccccCCceE
Confidence 567777766653 67899999999864 332 1222222232221 223456666
Q ss_pred EEEeehhhhHHHHHHHHHHhcCCCcEEEEecChhH---HHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEE
Q 011079 335 YYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNR---VELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNL 411 (494)
Q Consensus 335 ~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~---~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vl 411 (494)
.+...+ .+...+..++.... ..+||||++... ++.+++.|...|+.+..+||+| .+.++.|++|+.+||
T Consensus 309 ~yi~~~--~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~VL 380 (1176)
T PRK09401 309 SYIVDE--DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVDVL 380 (1176)
T ss_pred EEEEcc--cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCCEE
Confidence 665544 56667777777664 579999999777 9999999999999999999999 234599999999999
Q ss_pred EE----cCcccccCCCCC-CCEEEEcCCCC------CHHHHHHHhccccC
Q 011079 412 VC----TDLFTRGIDIQA-VNVVINFDFPK------NSETYLHRVGRSGR 450 (494)
Q Consensus 412 va----T~~~~~Gidi~~-v~~VI~~~~p~------s~~~~~Qr~GRagR 450 (494)
|| |++++||||+|+ |++||||+.|. ....+.||+||+-.
T Consensus 381 Vatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 381 VGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred EEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 99 699999999999 89999999999 66789999999864
No 70
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=4.7e-38 Score=311.95 Aligned_cols=298 Identities=19% Similarity=0.242 Sum_probs=207.4
Q ss_pred cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChH---------
Q 011079 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLK--------- 229 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~--------- 229 (494)
++++.+|||||||++|+++++..+.. ....+++|++|+++|+.|+.+.+..+... .++.+++.....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~-~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS-QKADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDSE 76 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh-CCCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCch
Confidence 58999999999999999999988654 33458999999999999999988887432 333333332210
Q ss_pred --HH-HHHh------cCCCeEEEEchHHHHHhHhcCC----ccc--cccceEEecccccccCCCcHHHHHHHHHHCC-CC
Q 011079 230 --DD-IMRL------YQPVHLLVGTPGRILDLSKKGV----CIL--KDCSMLVMDEADKLLSPEFQPSVEQLIRFLP-AN 293 (494)
Q Consensus 230 --~~-~~~~------~~~~~Ilv~T~~~l~~~~~~~~----~~l--~~~~~iViDEah~~~~~~~~~~~~~~~~~~~-~~ 293 (494)
.. .... ....+|+++||+.++..+.... ..+ -..++||+||+|.+.+..+.. +..++..+. .+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~ 155 (358)
T TIGR01587 77 EFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDND 155 (358)
T ss_pred hHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcC
Confidence 00 0000 1236799999999987655421 111 123789999999987654433 555554443 47
Q ss_pred CcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEEEee--hhhhHHHHHHHHHHhc-CCCcEEEEecChhHH
Q 011079 294 RQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFV--EERQKVHCLNTLFSKL-QINQSIIFCNSVNRV 370 (494)
Q Consensus 294 ~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~ 370 (494)
.|+++||||+|..+.++...+...+...............+.+... ....+...+..++... ..+++||||++++.+
T Consensus 156 ~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~ 235 (358)
T TIGR01587 156 VPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRA 235 (358)
T ss_pred CCEEEEecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHH
Confidence 8999999999977766665543322111111000000011111111 1223455555555543 467999999999999
Q ss_pred HHHHHHHHHcCC--cEEEEccCCCHHHHHH----HHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHH
Q 011079 371 ELLAKKITELGY--SCFYIHAKMLQDHRNR----VFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHR 444 (494)
Q Consensus 371 ~~l~~~L~~~~~--~~~~~~~~~~~~~r~~----i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr 444 (494)
+.+++.|.+.+. .+..+||.+++.+|.+ +++.|++|...|||||+++++|+|++ +++||++..| .++|+||
T Consensus 236 ~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr 312 (358)
T TIGR01587 236 QEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQR 312 (358)
T ss_pred HHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHH
Confidence 999999988765 5999999999999976 48899999999999999999999995 8888888665 7899999
Q ss_pred hccccCCCCc----ceEEEEeccc
Q 011079 445 VGRSGRFGHL----GLAVNLITYE 464 (494)
Q Consensus 445 ~GRagR~g~~----g~~~~l~~~~ 464 (494)
+||+||.|+. |.+|+|....
T Consensus 313 ~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 313 LGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred hccccCCCCCCCCCCeEEEEeecC
Confidence 9999998754 3677777643
No 71
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=2.5e-37 Score=317.08 Aligned_cols=305 Identities=15% Similarity=0.149 Sum_probs=220.5
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEE
Q 011079 141 ERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVM 220 (494)
Q Consensus 141 ~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~ 220 (494)
..|+++|.++++.++.+++.++++|||+|||+++...+ ..+... ...++||+|||++|+.|+.+.+.++.......+.
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~~-~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~ 190 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLEN-YEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMH 190 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHhc-CCCeEEEEECcHHHHHHHHHHHHHhcccccccee
Confidence 48999999999999999999999999999999764422 222222 2338999999999999999999988754444455
Q ss_pred EEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 011079 221 VTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (494)
Q Consensus 221 ~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 300 (494)
.+.++.... ...+|+|+|++++.+... ..+.++++||+||||++... .+..++..++...++++||
T Consensus 191 ~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~~~lGLT 256 (501)
T PHA02558 191 KIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKLDNCKFKFGLT 256 (501)
T ss_pred EEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHhhhccceEEEEe
Confidence 555554432 357899999999876432 24678999999999998653 4566777776677899999
Q ss_pred eecCcchHHHH--HhhcCCCeEEEe-------------------cccccccceeEE----E-----EeehhhhHHHHHHH
Q 011079 301 ATFPVTVKDFK--DKYLQKPYVINL-------------------MDELTLKGITQY----Y-----AFVEERQKVHCLNT 350 (494)
Q Consensus 301 ATl~~~~~~~~--~~~~~~~~~~~~-------------------~~~~~~~~~~~~----~-----~~~~~~~k~~~l~~ 350 (494)
||++....... ..++++ ....+ ............ + .......+...+..
T Consensus 257 ATp~~~~~~~~~~~~~fG~-i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~ 335 (501)
T PHA02558 257 GSLRDGKANILQYVGLFGD-IFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIAN 335 (501)
T ss_pred ccCCCccccHHHHHHhhCC-ceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHH
Confidence 99864322111 111221 11111 000000000000 0 00111123333344
Q ss_pred HHHhc--CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEc-CcccccCCCCCCC
Q 011079 351 LFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT-DLFTRGIDIQAVN 427 (494)
Q Consensus 351 ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT-~~~~~Gidi~~v~ 427 (494)
++... ...++||||...++++.+++.|.+.+.++..+||+++.++|..+++.|++|...||||| +++++|+|+|+++
T Consensus 336 ~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld 415 (501)
T PHA02558 336 LALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLH 415 (501)
T ss_pred HHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccccccccc
Confidence 43322 34689999999999999999999999999999999999999999999999999999998 8999999999999
Q ss_pred EEEEcCCCCCHHHHHHHhccccCCCCcceEEEEec
Q 011079 428 VVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLIT 462 (494)
Q Consensus 428 ~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~ 462 (494)
+||++.++.|...|+||+||++|.+..+....+|+
T Consensus 416 ~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D 450 (501)
T PHA02558 416 HVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWD 450 (501)
T ss_pred EEEEecCCcchhhhhhhhhccccCCCCCceEEEEE
Confidence 99999999999999999999999875444444443
No 72
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.2e-36 Score=316.73 Aligned_cols=318 Identities=19% Similarity=0.231 Sum_probs=238.8
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcE
Q 011079 139 GFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQ 218 (494)
Q Consensus 139 ~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~ 218 (494)
|. .|+++|..+.+.+..|+ |+.+.||+|||+++++|++..... +..|+|++||+.||.|.++++..+...+|++
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~---G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~ 149 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE---GKGVHLITVNDYLAKRDAEEMGQVYEFLGLT 149 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc---CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCe
Confidence 44 79999999999888887 999999999999999999865554 3479999999999999999999999999999
Q ss_pred EEEEECCCChHHHHHHhcCCCeEEEEchHHH-HHhHhcC------CccccccceEEecccccccCC--------------
Q 011079 219 VMVTTGGTSLKDDIMRLYQPVHLLVGTPGRI-LDLSKKG------VCILKDCSMLVMDEADKLLSP-------------- 277 (494)
Q Consensus 219 ~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~------~~~l~~~~~iViDEah~~~~~-------------- 277 (494)
++++.|+.+...+... ...++|+|+|++.| .+++... ...+..+.++|+||||.|+-+
T Consensus 150 v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~ 228 (790)
T PRK09200 150 VGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRV 228 (790)
T ss_pred EEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCcc
Confidence 9999999884444333 35689999999998 4444332 234678999999999987510
Q ss_pred --CcHHHHHHHHHHCCCC--------------------------------------------------------------
Q 011079 278 --EFQPSVEQLIRFLPAN-------------------------------------------------------------- 293 (494)
Q Consensus 278 --~~~~~~~~~~~~~~~~-------------------------------------------------------------- 293 (494)
.+......++..+...
T Consensus 229 ~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~ 308 (790)
T PRK09200 229 QSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVY 308 (790)
T ss_pred ccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 0111111111111000
Q ss_pred -------------------------------------------------------CcEEEEEeecCcchHHHHHhhcCCC
Q 011079 294 -------------------------------------------------------RQILMFSATFPVTVKDFKDKYLQKP 318 (494)
Q Consensus 294 -------------------------------------------------------~~~i~~SATl~~~~~~~~~~~~~~~ 318 (494)
.++.+||+|......++...| +-.
T Consensus 309 ~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y-~l~ 387 (790)
T PRK09200 309 DGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVY-NME 387 (790)
T ss_pred CCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHh-CCc
Confidence 145566666544344443333 222
Q ss_pred eEEEecccccccc-eeEEEEeehhhhHHHHHHHHHHh--cCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHH
Q 011079 319 YVINLMDELTLKG-ITQYYAFVEERQKVHCLNTLFSK--LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDH 395 (494)
Q Consensus 319 ~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 395 (494)
++.++...+... -.....+.+...|...+...+.. ....++||||++++.++.++..|.+.++.+..+||.+.+.+
T Consensus 388 -v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e 466 (790)
T PRK09200 388 -VVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKE 466 (790)
T ss_pred -EEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHH
Confidence 223332211111 01112334556788888777755 35679999999999999999999999999999999999888
Q ss_pred HHHHHHHhhcCCccEEEEcCcccccCCC---CCCC-----EEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchH
Q 011079 396 RNRVFHDFRNGACRNLVCTDLFTRGIDI---QAVN-----VVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRF 467 (494)
Q Consensus 396 r~~i~~~f~~g~~~vlvaT~~~~~Gidi---~~v~-----~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~ 467 (494)
+..+...+..| .|+|||++++||+|| ++|. +||+++.|.|...|.||+||+||.|.+|.|+.|++.+|..
T Consensus 467 ~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~l 544 (790)
T PRK09200 467 AQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDL 544 (790)
T ss_pred HHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHHH
Confidence 88888887766 699999999999999 6998 9999999999999999999999999999999999977654
No 73
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=1.2e-36 Score=323.57 Aligned_cols=348 Identities=24% Similarity=0.383 Sum_probs=278.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHH
Q 011079 127 LKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQ 206 (494)
Q Consensus 127 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~ 206 (494)
....+..++.+.|...++.+|.+|+..+.+|+++||+.+||||||.+|++|+++.+...... ++|+|.||++||.++.+
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-~AL~lYPtnALa~DQ~~ 133 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-RALLLYPTNALANDQAE 133 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-cEEEEechhhhHhhHHH
Confidence 33456788888889999999999999999999999999999999999999999999987765 89999999999999999
Q ss_pred HHHHHhccCC--cEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhc----CCccccccceEEecccccccCCCcH
Q 011079 207 VCKELGKHLN--IQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKK----GVCILKDCSMLVMDEADKLLSPEFQ 280 (494)
Q Consensus 207 ~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~----~~~~l~~~~~iViDEah~~~~~~~~ 280 (494)
.+.++...++ +.+..+.|++...+......++++|+++||.||..++.. +...+.++++||+||+|-. ...|+
T Consensus 134 rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtY-rGv~G 212 (851)
T COG1205 134 RLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTY-RGVQG 212 (851)
T ss_pred HHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceec-cccch
Confidence 9999988887 778888888887776666778999999999999874443 2444678999999999965 44566
Q ss_pred HHHHHHHHHC-------CCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeeh---------hhhH
Q 011079 281 PSVEQLIRFL-------PANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVE---------ERQK 344 (494)
Q Consensus 281 ~~~~~~~~~~-------~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~k 344 (494)
..+.-+++++ +.+.|+|++|||+. +..++...+.+......+.+.........+....+ ...+
T Consensus 213 S~vA~llRRL~~~~~~~~~~~q~i~~SAT~~-np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~ 291 (851)
T COG1205 213 SEVALLLRRLLRRLRRYGSPLQIICTSATLA-NPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSA 291 (851)
T ss_pred hHHHHHHHHHHHHHhccCCCceEEEEecccc-ChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccch
Confidence 5555554433 45789999999975 45677777777666554555555555555544444 2234
Q ss_pred HHHHHHHHHhc--CCCcEEEEecChhHHHHHH----HHHHHcC----CcEEEEccCCCHHHHHHHHHHhhcCCccEEEEc
Q 011079 345 VHCLNTLFSKL--QINQSIIFCNSVNRVELLA----KKITELG----YSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 414 (494)
Q Consensus 345 ~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~----~~L~~~~----~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT 414 (494)
...+..+.... ..-++|+|+.++..++.+. ..+...+ ..+..+++++..++|.++...|+.|+..++++|
T Consensus 292 ~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st 371 (851)
T COG1205 292 LAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIAT 371 (851)
T ss_pred HHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecc
Confidence 44444444433 4569999999999999986 4444444 568899999999999999999999999999999
Q ss_pred CcccccCCCCCCCEEEEcCCCC-CHHHHHHHhccccCCCCcceEEEEeccc--chHHHHHHHHHhC
Q 011079 415 DLFTRGIDIQAVNVVINFDFPK-NSETYLHRVGRSGRFGHLGLAVNLITYE--DRFNLYRIEQELG 477 (494)
Q Consensus 415 ~~~~~Gidi~~v~~VI~~~~p~-s~~~~~Qr~GRagR~g~~g~~~~l~~~~--~~~~~~~l~~~~~ 477 (494)
++++-||||.+++.||.++.|. +..++.||+|||||.++.+..+..+..+ |.......++.+.
T Consensus 372 ~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 372 NALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred hhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 9999999999999999999999 9999999999999998777776666632 4555555666666
No 74
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=3.3e-36 Score=310.30 Aligned_cols=317 Identities=16% Similarity=0.182 Sum_probs=230.9
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEE
Q 011079 143 PSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVT 222 (494)
Q Consensus 143 ~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~ 222 (494)
++|+|.+++..+..++..|+.++||+|||++|++|++.....+ ..++|++|++.||.|+.+++..+...+|+.++..
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g---~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~ 145 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTG---KGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLG 145 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcC---CceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 4555555555555555579999999999999999987665543 3689999999999999999999999999999888
Q ss_pred ECCCC---hHHHHHHhcCCCeEEEEchHHH-HHhHhc------CCccccccceEEecccccccCCC--------------
Q 011079 223 TGGTS---LKDDIMRLYQPVHLLVGTPGRI-LDLSKK------GVCILKDCSMLVMDEADKLLSPE-------------- 278 (494)
Q Consensus 223 ~g~~~---~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~------~~~~l~~~~~iViDEah~~~~~~-------------- 278 (494)
+++.. ...+.......++|+|+||+.| .+++.. ....+..+.++|+||||.|+-+.
T Consensus 146 ~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~~~ 225 (762)
T TIGR03714 146 VVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQ 225 (762)
T ss_pred ECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCccc
Confidence 76522 2233344446799999999999 454432 23346789999999999975100
Q ss_pred --cHHHHHHHHHHCCC----------------------------------------------------------------
Q 011079 279 --FQPSVEQLIRFLPA---------------------------------------------------------------- 292 (494)
Q Consensus 279 --~~~~~~~~~~~~~~---------------------------------------------------------------- 292 (494)
+......++..+..
T Consensus 226 ~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~ 305 (762)
T TIGR03714 226 SNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTN 305 (762)
T ss_pred hHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEEEC
Confidence 00111111111100
Q ss_pred -----------------------------------------------------CCcEEEEEeecCcchHHHHHhhcCCCe
Q 011079 293 -----------------------------------------------------NRQILMFSATFPVTVKDFKDKYLQKPY 319 (494)
Q Consensus 293 -----------------------------------------------------~~~~i~~SATl~~~~~~~~~~~~~~~~ 319 (494)
-.++.+||+|......++...| +-.
T Consensus 306 ~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY-~l~- 383 (762)
T TIGR03714 306 GEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETY-SLS- 383 (762)
T ss_pred CEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHh-CCC-
Confidence 0245667777654455554433 222
Q ss_pred EEEeccccccc-ceeEEEEeehhhhHHHHHHHHHHh--cCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHH
Q 011079 320 VINLMDELTLK-GITQYYAFVEERQKVHCLNTLFSK--LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHR 396 (494)
Q Consensus 320 ~~~~~~~~~~~-~~~~~~~~~~~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r 396 (494)
++.++...+.. .-.....+.....|...+...+.. ....++||||++++.++.++..|.+.++.+..+|+.+.+.++
T Consensus 384 v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~ 463 (762)
T TIGR03714 384 VVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEA 463 (762)
T ss_pred EEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHH
Confidence 23333222111 111123445566788877777755 356799999999999999999999999999999999999888
Q ss_pred HHHHHHhhcCCccEEEEcCcccccCCCC---------CCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchH
Q 011079 397 NRVFHDFRNGACRNLVCTDLFTRGIDIQ---------AVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRF 467 (494)
Q Consensus 397 ~~i~~~f~~g~~~vlvaT~~~~~Gidi~---------~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~ 467 (494)
..+...+..| .|+|||++++||+||+ ++.+|++++.|....+ .||+||+||.|.+|.++.|++.+|..
T Consensus 464 ~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~l 540 (762)
T TIGR03714 464 QIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDDL 540 (762)
T ss_pred HHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchhh
Confidence 8888877777 6999999999999999 9999999999988777 99999999999999999999987644
No 75
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=3.2e-37 Score=287.20 Aligned_cols=276 Identities=29% Similarity=0.522 Sum_probs=216.8
Q ss_pred CceEEEEEcCcHHHHHHHHHHHHHHhccC---CcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCcccccc
Q 011079 187 NVIQVVILVPTRELALQTSQVCKELGKHL---NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDC 263 (494)
Q Consensus 187 ~~~~~lil~P~~~la~q~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~ 263 (494)
+.+.++|+-|+++|++|....++++-... .++...+.|+...+.++..+..+++|+|+||+++.+++.++...+..+
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~c 364 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHC 364 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeee
Confidence 55689999999999999998777665443 345557788888899999999999999999999999999998899999
Q ss_pred ceEEecccccccCCCcHHHHHHHHHHCC------CCCcEEEEEeecCc-chHHHHHhhcCCCeEEEecccccccceeEEE
Q 011079 264 SMLVMDEADKLLSPEFQPSVEQLIRFLP------ANRQILMFSATFPV-TVKDFKDKYLQKPYVINLMDELTLKGITQYY 336 (494)
Q Consensus 264 ~~iViDEah~~~~~~~~~~~~~~~~~~~------~~~~~i~~SATl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (494)
.++|+||++.++..++...+..+...+| ...|.++.|||+.. ++.+...+.+.-|.-+.+..+...+...+.+
T Consensus 365 rFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhv 444 (725)
T KOG0349|consen 365 RFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHV 444 (725)
T ss_pred EEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccc
Confidence 9999999999988888877777766654 24688999999742 3444555555555444443322222111111
Q ss_pred -Eeeh--------------------------------h--hhHH-----HHHHHHHHhcCCCcEEEEecChhHHHHHHHH
Q 011079 337 -AFVE--------------------------------E--RQKV-----HCLNTLFSKLQINQSIIFCNSVNRVELLAKK 376 (494)
Q Consensus 337 -~~~~--------------------------------~--~~k~-----~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~ 376 (494)
..+. + .... +.-...++++...+.||||.++.+|+.|.++
T Consensus 445 v~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~ 524 (725)
T KOG0349|consen 445 VKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERM 524 (725)
T ss_pred eeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHH
Confidence 1000 0 0011 1112233455667999999999999999999
Q ss_pred HHHc---CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCC
Q 011079 377 ITEL---GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGH 453 (494)
Q Consensus 377 L~~~---~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~ 453 (494)
+.+. .+.|+++|++..+.+|..-++.|..+..+.||||+++++||||.++-++|+..+|....+|+||+||+||+.+
T Consensus 525 ~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraer 604 (725)
T KOG0349|consen 525 MNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAER 604 (725)
T ss_pred HHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhh
Confidence 9987 4789999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cceEEEEec
Q 011079 454 LGLAVNLIT 462 (494)
Q Consensus 454 ~g~~~~l~~ 462 (494)
-|.++.|+.
T Consensus 605 mglaislva 613 (725)
T KOG0349|consen 605 MGLAISLVA 613 (725)
T ss_pred cceeEEEee
Confidence 899988875
No 76
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=7.8e-37 Score=317.13 Aligned_cols=335 Identities=18% Similarity=0.265 Sum_probs=255.7
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHH-HHHHHhccCCcEEE
Q 011079 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQ-VCKELGKHLNIQVM 220 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~-~~~~~~~~~~~~~~ 220 (494)
..+.+++..++++.+++.++|+|+||||||++....+++.....+...++++..|+|..|..+++ ++.+.+...|-.|+
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VG 252 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVG 252 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeee
Confidence 46788899999999999999999999999999999999998777766676666699999988876 45566655665555
Q ss_pred EEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEeccccc-ccCCCcHHHHHHHHHHCCCCCcEEEE
Q 011079 221 VTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADK-LLSPEFQPSVEQLIRFLPANRQILMF 299 (494)
Q Consensus 221 ~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~-~~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (494)
.-.+..... ...+.+++||.|.|++.+..+ ..+..+++||+||+|+ -.+.+|.-.+.+.+-...++.++|+|
T Consensus 253 Yqvrl~~~~------s~~t~L~fcTtGvLLr~L~~~-~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILM 325 (924)
T KOG0920|consen 253 YQVRLESKR------SRETRLLFCTTGVLLRRLQSD-PTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILM 325 (924)
T ss_pred EEEeeeccc------CCceeEEEecHHHHHHHhccC-cccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEe
Confidence 544443322 234899999999999998884 4589999999999994 55667776666666666689999999
Q ss_pred EeecCcchHHHHHhhcCCCeEEEeccc-cccc----------------ceeEE------------EEeehhhhHHHHHHH
Q 011079 300 SATFPVTVKDFKDKYLQKPYVINLMDE-LTLK----------------GITQY------------YAFVEERQKVHCLNT 350 (494)
Q Consensus 300 SATl~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------------~~~~~------------~~~~~~~~k~~~l~~ 350 (494)
|||+. .+.|...|.+.| ++.+... ++.. ...++ ..........+++..
T Consensus 326 SAT~d--ae~fs~YF~~~p-vi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~ 402 (924)
T KOG0920|consen 326 SATLD--AELFSDYFGGCP-VITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIED 402 (924)
T ss_pred eeecc--hHHHHHHhCCCc-eEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHH
Confidence 99987 455555555444 4433221 1100 00001 000011123444444
Q ss_pred HHH----hcCCCcEEEEecChhHHHHHHHHHHHc-------CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccc
Q 011079 351 LFS----KLQINQSIIFCNSVNRVELLAKKITEL-------GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTR 419 (494)
Q Consensus 351 ll~----~~~~~~~lVF~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~ 419 (494)
++. ....|.+|||.|++.++..+++.|... ++-+.++|+.|+.+++..+|...+.|.++||+|||++++
T Consensus 403 li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAET 482 (924)
T KOG0920|consen 403 LIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAET 482 (924)
T ss_pred HHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhh
Confidence 443 335689999999999999999999752 367889999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEEcCCC------------------CCHHHHHHHhccccCCCCcceEEEEeccc--chHHH-HHHHHHhCC
Q 011079 420 GIDIQAVNVVINFDFP------------------KNSETYLHRVGRSGRFGHLGLAVNLITYE--DRFNL-YRIEQELGT 478 (494)
Q Consensus 420 Gidi~~v~~VI~~~~p------------------~s~~~~~Qr~GRagR~g~~g~~~~l~~~~--~~~~~-~~l~~~~~~ 478 (494)
+|+|++|.+||+.+.- .|.++..||.|||||. .+|.||.+|+.. +.... +.+++.++.
T Consensus 483 SITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~~~~~~~q~PEilR~ 561 (924)
T KOG0920|consen 483 SITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYEKLMLAYQLPEILRT 561 (924)
T ss_pred cccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhhhcccccCChHHHhC
Confidence 9999999999976542 2677889999999999 799999999964 45555 789999999
Q ss_pred CCccCCcch
Q 011079 479 EIKQIPPHI 487 (494)
Q Consensus 479 ~~~~~~~~~ 487 (494)
++++++.++
T Consensus 562 pL~~l~L~i 570 (924)
T KOG0920|consen 562 PLEELCLHI 570 (924)
T ss_pred hHHHhhhee
Confidence 999888754
No 77
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2.1e-36 Score=291.11 Aligned_cols=340 Identities=23% Similarity=0.272 Sum_probs=273.8
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcH
Q 011079 120 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPI-ALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (494)
Q Consensus 120 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (494)
....++.+++++..-++..|+..+.|+|..++.+ +++|.|.+++.+|+||||++..++-+..+...+. +.|+++|..
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~--KmlfLvPLV 271 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGK--KMLFLVPLV 271 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCC--eEEEEehhH
Confidence 4567888999999999999999999999999975 5689999999999999999998888888776443 789999999
Q ss_pred HHHHHHHHHHHHHhccCCcEEEEEECCCChHHHH----HHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccc
Q 011079 199 ELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDI----MRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKL 274 (494)
Q Consensus 199 ~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~ 274 (494)
+||.|-++.|++....+++.+..-+|-..++... .......+|+|+|++-+..+++.+ ..+.++..|||||+|.+
T Consensus 272 ALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL 350 (830)
T COG1202 272 ALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTL 350 (830)
T ss_pred HhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeec
Confidence 9999999999988889999888877766554331 112246799999999999888887 56999999999999998
Q ss_pred cCCCcHHHHHHHH---HHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeehhhhHHHHHHHH
Q 011079 275 LSPEFQPSVEQLI---RFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTL 351 (494)
Q Consensus 275 ~~~~~~~~~~~~~---~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~l 351 (494)
-+...++.+.-++ +.+.+..|+|.+|||.. +..+++..+-.....+ +..+.+--.+....-....|.+.+..+
T Consensus 351 ~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVg-Np~elA~~l~a~lV~y---~~RPVplErHlvf~~~e~eK~~ii~~L 426 (830)
T COG1202 351 EDEERGPRLDGLIGRLRYLFPGAQFIYLSATVG-NPEELAKKLGAKLVLY---DERPVPLERHLVFARNESEKWDIIARL 426 (830)
T ss_pred cchhcccchhhHHHHHHHhCCCCeEEEEEeecC-ChHHHHHHhCCeeEee---cCCCCChhHeeeeecCchHHHHHHHHH
Confidence 8767776666664 44556899999999975 3456666554443322 222233233333334467788888888
Q ss_pred HHhc--------CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCC
Q 011079 352 FSKL--------QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDI 423 (494)
Q Consensus 352 l~~~--------~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi 423 (494)
.+.. -.|++|||++|+..|..+++.|...|+++.+||++|+..+|..+...|.++...++|+|-+++.|+|+
T Consensus 427 ~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDF 506 (830)
T COG1202 427 VKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDF 506 (830)
T ss_pred HHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCC
Confidence 7543 24689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEE---cCC-CCCHHHHHHHhccccCCCC--cceEEEEecccch
Q 011079 424 QAVNVVIN---FDF-PKNSETYLHRVGRSGRFGH--LGLAVNLITYEDR 466 (494)
Q Consensus 424 ~~v~~VI~---~~~-p~s~~~~~Qr~GRagR~g~--~g~~~~l~~~~~~ 466 (494)
|.-.+++. ++. ..|+.+|.|+.|||||.+- .|++|+++.+...
T Consensus 507 PASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~ 555 (830)
T COG1202 507 PASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKK 555 (830)
T ss_pred chHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChh
Confidence 97655441 222 3489999999999999653 5999999987543
No 78
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2.3e-36 Score=317.16 Aligned_cols=331 Identities=24% Similarity=0.303 Sum_probs=249.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHh-cCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHH
Q 011079 127 LKRELLMGIFEKGFERPSPIQEESIPIAL-TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTS 205 (494)
Q Consensus 127 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~-~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~ 205 (494)
+++.+.+-+...++..+++.|..++.... +++|++|++|||||||+.+.+.++..+.+. +.+++|+||+++||.+..
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~Ek~ 93 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEEKY 93 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHHHH
Confidence 56677777777888777777777776555 558999999999999999999999999875 348999999999999998
Q ss_pred HHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHH
Q 011079 206 QVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQ 285 (494)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~ 285 (494)
+.++ ..+.+|++|...+|+.....+. ...++|+|+||+++..++++....+..+++|||||+|.+.+...++.++.
T Consensus 94 ~~~~-~~~~~GirV~~~TgD~~~~~~~---l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~ 169 (766)
T COG1204 94 EEFS-RLEELGIRVGISTGDYDLDDER---LARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLES 169 (766)
T ss_pred HHhh-hHHhcCCEEEEecCCcccchhh---hccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehh
Confidence 8888 4467899999999998866432 25789999999999999888877889999999999998887767777777
Q ss_pred HHHHCC---CCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccc--eeEEEEeehh-------hhHHHHHHHHHH
Q 011079 286 LIRFLP---ANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKG--ITQYYAFVEE-------RQKVHCLNTLFS 353 (494)
Q Consensus 286 ~~~~~~---~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------~~k~~~l~~ll~ 353 (494)
++.+.. ...+++++|||+| +..++....-.++............. ....+..... ......+..++.
T Consensus 170 iv~r~~~~~~~~rivgLSATlp-N~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~ 248 (766)
T COG1204 170 IVARMRRLNELIRIVGLSATLP-NAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLE 248 (766)
T ss_pred HHHHHHhhCcceEEEEEeeecC-CHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHH
Confidence 765543 3479999999998 34555444333332111111111111 1111111111 122333444444
Q ss_pred hc-CCCcEEEEecChhHHHHHHHHHHHc-------------------------------------CCcEEEEccCCCHHH
Q 011079 354 KL-QINQSIIFCNSVNRVELLAKKITEL-------------------------------------GYSCFYIHAKMLQDH 395 (494)
Q Consensus 354 ~~-~~~~~lVF~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~~~~~~~~ 395 (494)
.. ..+.+||||+++..+...++.|... ...+..+|++++.++
T Consensus 249 ~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~ 328 (766)
T COG1204 249 SLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPRED 328 (766)
T ss_pred HHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHH
Confidence 43 5579999999999999999888830 124778999999999
Q ss_pred HHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEE----EcC-----CCCCHHHHHHHhccccCCCC--cceEEEEeccc
Q 011079 396 RNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVI----NFD-----FPKNSETYLHRVGRSGRFGH--LGLAVNLITYE 464 (494)
Q Consensus 396 r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI----~~~-----~p~s~~~~~Qr~GRagR~g~--~g~~~~l~~~~ 464 (494)
|..+.+.|+.|.++||+||..++.|+|+|.-.+|| .|+ .+.+.-+++|++|||||.|- .|.++++.+..
T Consensus 329 R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~ 408 (766)
T COG1204 329 RQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSH 408 (766)
T ss_pred HHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCc
Confidence 99999999999999999999999999999888777 355 46688899999999999764 36666666433
No 79
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1.9e-35 Score=302.79 Aligned_cols=315 Identities=19% Similarity=0.226 Sum_probs=238.6
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEE
Q 011079 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~ 221 (494)
.|+++|..+...+..|+ |+.++||+|||+++.+|++.....+ ..|+|++||+.||.|.++++..+...+++++++
T Consensus 56 ~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G---~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~ 130 (745)
T TIGR00963 56 RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTG---KGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGL 130 (745)
T ss_pred CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhC---CCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEE
Confidence 78999999998888776 9999999999999999995333332 268999999999999999999999999999999
Q ss_pred EECCCChHHHHHHhcCCCeEEEEchHHH-HHhHhcC------CccccccceEEecccccccCCC----------------
Q 011079 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRI-LDLSKKG------VCILKDCSMLVMDEADKLLSPE---------------- 278 (494)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~------~~~l~~~~~iViDEah~~~~~~---------------- 278 (494)
++|+.+..+.... -.++|+|+||+.| +++++.. ...+..+.++|+||+|+++-+.
T Consensus 131 i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ 208 (745)
T TIGR00963 131 ILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTE 208 (745)
T ss_pred EeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCCchH
Confidence 9999886554433 3579999999999 7777655 2457889999999999875100
Q ss_pred cHHHHHHHHHHCC-------------------------------------------------------------------
Q 011079 279 FQPSVEQLIRFLP------------------------------------------------------------------- 291 (494)
Q Consensus 279 ~~~~~~~~~~~~~------------------------------------------------------------------- 291 (494)
+......+.+.+.
T Consensus 209 ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~ 288 (745)
T TIGR00963 209 LYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRDGE 288 (745)
T ss_pred HHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCE
Confidence 0000000000000
Q ss_pred --------------------------------------------------CCCcEEEEEeecCcchHHHHHhhcCCCeEE
Q 011079 292 --------------------------------------------------ANRQILMFSATFPVTVKDFKDKYLQKPYVI 321 (494)
Q Consensus 292 --------------------------------------------------~~~~~i~~SATl~~~~~~~~~~~~~~~~~~ 321 (494)
--.++.+||+|......++...|--+ ++
T Consensus 289 V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~--vv 366 (745)
T TIGR00963 289 VVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLE--VV 366 (745)
T ss_pred EEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCC--EE
Confidence 00156677777765555554444332 22
Q ss_pred Eeccccc--ccceeEEEEeehhhhHHHHHHHHHH--hcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHH
Q 011079 322 NLMDELT--LKGITQYYAFVEERQKVHCLNTLFS--KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRN 397 (494)
Q Consensus 322 ~~~~~~~--~~~~~~~~~~~~~~~k~~~l~~ll~--~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~ 397 (494)
.++...+ ..... ...+.+...|...+...+. +....++||||++.+.++.+++.|.+.++.+..+|+. +..|+
T Consensus 367 ~IPtnkp~~R~d~~-d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rE 443 (745)
T TIGR00963 367 VVPTNRPVIRKDLS-DLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHERE 443 (745)
T ss_pred EeCCCCCeeeeeCC-CeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHH
Confidence 2332211 11111 1223445556666655442 2356799999999999999999999999999999999 78899
Q ss_pred HHHHHhhcCCccEEEEcCcccccCCCCC-------CCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHH
Q 011079 398 RVFHDFRNGACRNLVCTDLFTRGIDIQA-------VNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFN 468 (494)
Q Consensus 398 ~i~~~f~~g~~~vlvaT~~~~~Gidi~~-------v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~ 468 (494)
..+..|..+...|+|||++++||+||+. .-+||+++.|.|...|.|++||+||.|.+|.+..|++.+|...
T Consensus 444 a~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l~ 521 (745)
T TIGR00963 444 AEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLM 521 (745)
T ss_pred HHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHHHH
Confidence 9999999999999999999999999999 5599999999999999999999999999999999999876543
No 80
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=8.8e-35 Score=315.64 Aligned_cols=321 Identities=22% Similarity=0.261 Sum_probs=238.5
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEE
Q 011079 140 FERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQV 219 (494)
Q Consensus 140 ~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~ 219 (494)
.-+++++|.+++..++.+ ++++++|||+|||+++++++...+.. .+.++|||||+++|+.|+.+.++++....+..+
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~--~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v 89 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK--KGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKI 89 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh--CCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceE
Confidence 347899999999988887 89999999999999999888877732 334899999999999999999988765445577
Q ss_pred EEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEE
Q 011079 220 MVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMF 299 (494)
Q Consensus 220 ~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (494)
..++|+....+ ...+....+|+|+||+.+...+......+.++++||+||||++........+............+++|
T Consensus 90 ~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~l 168 (773)
T PRK13766 90 VVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGL 168 (773)
T ss_pred EEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEE
Confidence 77888776543 34445678999999999988776666778899999999999976543333333444444456779999
Q ss_pred EeecCcchHHH---HHhh------------------cCCCeEEEec----cc----------------------------
Q 011079 300 SATFPVTVKDF---KDKY------------------LQKPYVINLM----DE---------------------------- 326 (494)
Q Consensus 300 SATl~~~~~~~---~~~~------------------~~~~~~~~~~----~~---------------------------- 326 (494)
|||+......+ .... +..+.+..+. ..
T Consensus 169 TaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~ 248 (773)
T PRK13766 169 TASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSI 248 (773)
T ss_pred EcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccC
Confidence 99963221111 1111 0000000000 00
Q ss_pred ---ccccc-------eeEE-------------------------------------------------------------
Q 011079 327 ---LTLKG-------ITQY------------------------------------------------------------- 335 (494)
Q Consensus 327 ---~~~~~-------~~~~------------------------------------------------------------- 335 (494)
..... +...
T Consensus 249 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~ 328 (773)
T PRK13766 249 SPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVE 328 (773)
T ss_pred CCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHh
Confidence 00000 0000
Q ss_pred -----------EEeehhhhHHHHHHHHHHh----cCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccC--------CC
Q 011079 336 -----------YAFVEERQKVHCLNTLFSK----LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAK--------ML 392 (494)
Q Consensus 336 -----------~~~~~~~~k~~~l~~ll~~----~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~--------~~ 392 (494)
........|...|..++.. ....++||||.+++.++.+++.|...++.+..+||. ++
T Consensus 329 ~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~ 408 (773)
T PRK13766 329 DPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMS 408 (773)
T ss_pred CHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCC
Confidence 0000112244555555544 456799999999999999999999999999999886 89
Q ss_pred HHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccc
Q 011079 393 QDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYED 465 (494)
Q Consensus 393 ~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~ 465 (494)
+.+|..+++.|++|..+|||||+++++|+|+|++++||+||+|++...|+||+||+||.| +|.+|.|++.+.
T Consensus 409 ~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~t 480 (773)
T PRK13766 409 QKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKGT 480 (773)
T ss_pred HHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCCC
Confidence 999999999999999999999999999999999999999999999999999999999986 589999998653
No 81
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-36 Score=301.63 Aligned_cols=324 Identities=17% Similarity=0.230 Sum_probs=235.0
Q ss_pred HHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCC---CceEEEEEcCcHHHHHHHHH-HHHHHhccCCcEEEEEE
Q 011079 148 EESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN---NVIQVVILVPTRELALQTSQ-VCKELGKHLNIQVMVTT 223 (494)
Q Consensus 148 ~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~---~~~~~lil~P~~~la~q~~~-~~~~~~~~~~~~~~~~~ 223 (494)
.+++.+|.++-.+||||+||||||++...++++.-.... .+.-+-|.-|+|..|..++. +..+++. ++-.|++.+
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~~eVsYqI 340 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-LGSEVSYQI 340 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-CccceeEEE
Confidence 355667777777999999999999998888887754332 22245556699999977654 4555554 455555443
Q ss_pred CCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHC-------C-----
Q 011079 224 GGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFL-------P----- 291 (494)
Q Consensus 224 g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~-------~----- 291 (494)
.... .....+.|.+||.|.|++.+..+.. |..++.||+||||+= ..+...+..++.++ .
T Consensus 341 Rfd~------ti~e~T~IkFMTDGVLLrEi~~Dfl-L~kYSvIIlDEAHER--SvnTDILiGmLSRiV~LR~k~~ke~~~ 411 (1172)
T KOG0926|consen 341 RFDG------TIGEDTSIKFMTDGVLLREIENDFL-LTKYSVIILDEAHER--SVNTDILIGMLSRIVPLRQKYYKEQCQ 411 (1172)
T ss_pred Eecc------ccCCCceeEEecchHHHHHHHHhHh-hhhceeEEechhhhc--cchHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3222 1235679999999999999888765 899999999999951 11222222222222 1
Q ss_pred -CCCcEEEEEeecCcchHHHH--Hh-hcCCCeEEEecccccccceeEEEEeehhh---hHHHHHHHHHHhcCCCcEEEEe
Q 011079 292 -ANRQILMFSATFPVTVKDFK--DK-YLQKPYVINLMDELTLKGITQYYAFVEER---QKVHCLNTLFSKLQINQSIIFC 364 (494)
Q Consensus 292 -~~~~~i~~SATl~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~~ll~~~~~~~~lVF~ 364 (494)
...++|+||||+. +.+|. .. |-..|.++.+.... .+...++....+.. ........++..++.|.+|||+
T Consensus 412 ~kpLKLIIMSATLR--VsDFtenk~LFpi~pPlikVdARQ-fPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFv 488 (1172)
T KOG0926|consen 412 IKPLKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDARQ-FPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFV 488 (1172)
T ss_pred cCceeEEEEeeeEE--ecccccCceecCCCCceeeeeccc-CceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEE
Confidence 2578999999986 44444 22 22334455544332 23333333333322 2345566778888999999999
Q ss_pred cChhHHHHHHHHHHH-----------------------------------------------------------------
Q 011079 365 NSVNRVELLAKKITE----------------------------------------------------------------- 379 (494)
Q Consensus 365 ~~~~~~~~l~~~L~~----------------------------------------------------------------- 379 (494)
+++.++++|++.|++
T Consensus 489 TGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~ 568 (1172)
T KOG0926|consen 489 TGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAF 568 (1172)
T ss_pred eChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhh
Confidence 999999999999987
Q ss_pred ----------------------------------cCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCC
Q 011079 380 ----------------------------------LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQA 425 (494)
Q Consensus 380 ----------------------------------~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~ 425 (494)
...-++++|+-++.+.+.++|+.-+.|.+-++||||+++++++||+
T Consensus 569 ~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPg 648 (1172)
T KOG0926|consen 569 NALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPG 648 (1172)
T ss_pred hccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCC
Confidence 0123889999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCC------------------CHHHHHHHhccccCCCCcceEEEEecc---cchHHHHHHHHHhCCCCccCC
Q 011079 426 VNVVINFDFPK------------------NSETYLHRVGRSGRFGHLGLAVNLITY---EDRFNLYRIEQELGTEIKQIP 484 (494)
Q Consensus 426 v~~VI~~~~p~------------------s~~~~~Qr~GRagR~g~~g~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~ 484 (494)
|+|||+.+..+ |.++.-||+|||||+| +|+||+||+. ++.+....+++++.+|.+.+-
T Consensus 649 IkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSAVf~~~Fe~fS~PEIlk~Pve~lv 727 (1172)
T KOG0926|consen 649 IKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSAVFSNDFEEFSLPEILKKPVESLV 727 (1172)
T ss_pred eeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhHHhhcchhhhccHHHhhCcHHHHH
Confidence 99999876633 6677789999999998 8999999995 456677788889988887654
Q ss_pred c
Q 011079 485 P 485 (494)
Q Consensus 485 ~ 485 (494)
.
T Consensus 728 L 728 (1172)
T KOG0926|consen 728 L 728 (1172)
T ss_pred H
Confidence 4
No 82
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=6.6e-35 Score=286.41 Aligned_cols=288 Identities=19% Similarity=0.195 Sum_probs=200.4
Q ss_pred HHHHHHHHHhcCCc--EEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccC----CcEE
Q 011079 146 IQEESIPIALTGSD--ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHL----NIQV 219 (494)
Q Consensus 146 ~Q~~~i~~~~~~~~--~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~----~~~~ 219 (494)
+|.++++.+.++.+ +++++|||||||.+|++|++.. ..++++++|+++|+.|+.+.++.+...+ +..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v 74 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNL 74 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceE
Confidence 59999999998875 7889999999999999998852 2267999999999999999888876433 4556
Q ss_pred EEEECCCChHHHH--------------------HHhcCCCeEEEEchHHHHHhHhcCC--------ccccccceEEeccc
Q 011079 220 MVTTGGTSLKDDI--------------------MRLYQPVHLLVGTPGRILDLSKKGV--------CILKDCSMLVMDEA 271 (494)
Q Consensus 220 ~~~~g~~~~~~~~--------------------~~~~~~~~Ilv~T~~~l~~~~~~~~--------~~l~~~~~iViDEa 271 (494)
..+.|.+...... ......+.|+++||++|..++.... ..+.++++||+||+
T Consensus 75 ~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~ 154 (357)
T TIGR03158 75 LHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEF 154 (357)
T ss_pred EEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecc
Confidence 6666652211000 0112467899999999876654321 12578999999999
Q ss_pred ccccCCCc-----HHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhh--cCCCeEEEecccc-----------------
Q 011079 272 DKLLSPEF-----QPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKY--LQKPYVINLMDEL----------------- 327 (494)
Q Consensus 272 h~~~~~~~-----~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~--~~~~~~~~~~~~~----------------- 327 (494)
|.+..... ......+++......++++||||+++.+....... +..+.........
T Consensus 155 H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~ 234 (357)
T TIGR03158 155 HLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSF 234 (357)
T ss_pred cccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcccccccc
Confidence 98764221 11233344444445799999999998777766654 3433222111100
Q ss_pred --cccceeEEEEeehhhhHHHHHHHHH-------HhcCCCcEEEEecChhHHHHHHHHHHHcC--CcEEEEccCCCHHHH
Q 011079 328 --TLKGITQYYAFVEERQKVHCLNTLF-------SKLQINQSIIFCNSVNRVELLAKKITELG--YSCFYIHAKMLQDHR 396 (494)
Q Consensus 328 --~~~~~~~~~~~~~~~~k~~~l~~ll-------~~~~~~~~lVF~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~r 396 (494)
..+.+...+.. ....+...+..++ .....+++||||++++.++.+++.|.+.+ +.+..+||.+++.+|
T Consensus 235 ~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R 313 (357)
T TIGR03158 235 RPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDR 313 (357)
T ss_pred ceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHH
Confidence 00123332222 2223333332222 22355799999999999999999999864 578889999999988
Q ss_pred HHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhcccc
Q 011079 397 NRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSG 449 (494)
Q Consensus 397 ~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRag 449 (494)
.++ ++..|||||+++++|||++.+ +|| ++ |.+.++|+||+||+|
T Consensus 314 ~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 314 ERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 765 378899999999999999987 666 45 899999999999987
No 83
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=2e-34 Score=316.15 Aligned_cols=290 Identities=19% Similarity=0.252 Sum_probs=215.6
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHH
Q 011079 131 LLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKE 210 (494)
Q Consensus 131 l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~ 210 (494)
+.+.+.+.....|+++|..+++.++.|++++++||||||||+ |.+++...+... +.+++||+||++|+.|+.+.+..
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~--g~~vLIL~PTreLa~Qi~~~l~~ 143 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKK--GKRCYIILPTTLLVIQVAEKISS 143 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhc--CCeEEEEeCHHHHHHHHHHHHHH
Confidence 334444433447999999999999999999999999999997 566666655433 45899999999999999999999
Q ss_pred HhccCCcEEE---EEECCCChHHH---HHHhc-CCCeEEEEchHHHHHhHhcCCccccccceEEecccccccC-------
Q 011079 211 LGKHLNIQVM---VTTGGTSLKDD---IMRLY-QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS------- 276 (494)
Q Consensus 211 ~~~~~~~~~~---~~~g~~~~~~~---~~~~~-~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~------- 276 (494)
++...++.+. .++|+.+..++ ...+. .+++|+|+||++|.+.+.... . ++++||+||||+|++
T Consensus 144 l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L~~~k~vd~ 220 (1171)
T TIGR01054 144 LAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALLKASKNVDK 220 (1171)
T ss_pred HHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhhhccccHHH
Confidence 9887765543 46777766543 22233 358999999999988766421 1 899999999999987
Q ss_pred ----CCcHHH-HHHHH----------------------HHCCCCCc--EEEEEee-cCcchHHHHHhhcCCCeEEEecc-
Q 011079 277 ----PEFQPS-VEQLI----------------------RFLPANRQ--ILMFSAT-FPVTVKDFKDKYLQKPYVINLMD- 325 (494)
Q Consensus 277 ----~~~~~~-~~~~~----------------------~~~~~~~~--~i~~SAT-l~~~~~~~~~~~~~~~~~~~~~~- 325 (494)
.+|.+. +..++ ..++...| ++++||| +|..... .++.+...+.+..
T Consensus 221 il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~~ 297 (1171)
T TIGR01054 221 LLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGGG 297 (1171)
T ss_pred HHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceEecCc
Confidence 466653 34332 23444555 5678999 5654442 2233333333322
Q ss_pred cccccceeEEEEeehhhhHHHHHHHHHHhcCCCcEEEEecCh---hHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHH
Q 011079 326 ELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSV---NRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHD 402 (494)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~---~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~ 402 (494)
.....++.+.+..... +...+..++.... ..+||||+++ +.|+.+++.|.+.|+++..+||++++ .+++.
T Consensus 298 ~~~~r~I~~~~~~~~~--~~~~L~~ll~~l~-~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~ 370 (1171)
T TIGR01054 298 SDTLRNVVDVYVEDED--LKETLLEIVKKLG-TGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEK 370 (1171)
T ss_pred cccccceEEEEEeccc--HHHHHHHHHHHcC-CCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHH
Confidence 2234456666554332 2345666776653 5799999999 99999999999999999999999973 68999
Q ss_pred hhcCCccEEEE----cCcccccCCCCC-CCEEEEcCCCC
Q 011079 403 FRNGACRNLVC----TDLFTRGIDIQA-VNVVINFDFPK 436 (494)
Q Consensus 403 f~~g~~~vlva----T~~~~~Gidi~~-v~~VI~~~~p~ 436 (494)
|++|+.+|||| |++++||||+|+ |++|||||+|.
T Consensus 371 Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 371 FAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred HHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 99999999999 589999999999 89999999997
No 84
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=4.2e-34 Score=289.01 Aligned_cols=318 Identities=24% Similarity=0.315 Sum_probs=228.8
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEE
Q 011079 141 ERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVM 220 (494)
Q Consensus 141 ~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~ 220 (494)
-.++.||.+.+..++ ++++||++|||+|||.++...++.++..... .++++++|++.|..|+...+..++.. ..+.
T Consensus 61 ~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~T 136 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLVNQQIACFSIYLIP--YSVT 136 (746)
T ss_pred ccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHHHHHHHHHhhccCc--ccce
Confidence 378999999999999 9999999999999999999999998876555 58999999999999988777766544 5566
Q ss_pred EEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCcc-ccccceEEeccccccc-CCCcHHHHHHHHHHCCCCCcEEE
Q 011079 221 VTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCI-LKDCSMLVMDEADKLL-SPEFQPSVEQLIRFLPANRQILM 298 (494)
Q Consensus 221 ~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~-l~~~~~iViDEah~~~-~~~~~~~~~~~~~~~~~~~~~i~ 298 (494)
...|+.........+....+|+|+||+.+...+...... |+.|+++||||||+-. +..+...+..++..-....|+|+
T Consensus 137 ~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qILg 216 (746)
T KOG0354|consen 137 GQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQILG 216 (746)
T ss_pred eeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccccEEE
Confidence 666665544444456678899999999998877765433 5889999999999854 45566666666666555569999
Q ss_pred EEeecCcchHH--------------------------------------------------HHHhhcC---CCeEEEec-
Q 011079 299 FSATFPVTVKD--------------------------------------------------FKDKYLQ---KPYVINLM- 324 (494)
Q Consensus 299 ~SATl~~~~~~--------------------------------------------------~~~~~~~---~~~~~~~~- 324 (494)
+|||+..+... +...++. ...++.+.
T Consensus 217 LTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~ 296 (746)
T KOG0354|consen 217 LTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEISD 296 (746)
T ss_pred EecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCcccccc
Confidence 99995211111 0000000 00000000
Q ss_pred ------------cccccc--------------------------cee---------EEEE--------------------
Q 011079 325 ------------DELTLK--------------------------GIT---------QYYA-------------------- 337 (494)
Q Consensus 325 ------------~~~~~~--------------------------~~~---------~~~~-------------------- 337 (494)
.....+ ++. .++.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~ 376 (746)
T KOG0354|consen 297 KSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRNF 376 (746)
T ss_pred ccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHHH
Confidence 000000 000 0000
Q ss_pred -----------ee--hhhhHHHHHHHHHHh----cCCCcEEEEecChhHHHHHHHHHHHc---CCcEEEE--------cc
Q 011079 338 -----------FV--EERQKVHCLNTLFSK----LQINQSIIFCNSVNRVELLAKKITEL---GYSCFYI--------HA 389 (494)
Q Consensus 338 -----------~~--~~~~k~~~l~~ll~~----~~~~~~lVF~~~~~~~~~l~~~L~~~---~~~~~~~--------~~ 389 (494)
.. ....|+..+..++.. .+..++||||.+++.|..|.++|.+. ++....+ ..
T Consensus 377 ~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~ 456 (746)
T KOG0354|consen 377 TENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQST 456 (746)
T ss_pred HHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeecccccccc
Confidence 00 012244444444432 24458999999999999999999842 2332222 24
Q ss_pred CCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEeccc
Q 011079 390 KMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYE 464 (494)
Q Consensus 390 ~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~ 464 (494)
+|++.++.++++.|++|...|||||+++++|+||+.++.||-||...|+...+||.|| ||. +.|.|+++++..
T Consensus 457 gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~ 529 (746)
T KOG0354|consen 457 GMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGS 529 (746)
T ss_pred ccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcch
Confidence 7999999999999999999999999999999999999999999999999999999999 998 579999999943
No 85
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=9.1e-34 Score=292.38 Aligned_cols=304 Identities=16% Similarity=0.167 Sum_probs=213.3
Q ss_pred CCcHHHHHHHHHHhcC---CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcE
Q 011079 142 RPSPIQEESIPIALTG---SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQ 218 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~---~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~ 218 (494)
.++|+|.+++..+..+ +..++++|||+|||++.+..+.. +. .++|||||+..|+.||.+.+.++.......
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l~-----k~tLILvps~~Lv~QW~~ef~~~~~l~~~~ 328 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-VK-----KSCLVLCTSAVSVEQWKQQFKMWSTIDDSQ 328 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-hC-----CCEEEEeCcHHHHHHHHHHHHHhcCCCCce
Confidence 6899999999998843 36899999999999997654433 21 268999999999999999999886444456
Q ss_pred EEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcC--------CccccccceEEecccccccCCCcHHHHHHHHHHC
Q 011079 219 VMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG--------VCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFL 290 (494)
Q Consensus 219 ~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~--------~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~ 290 (494)
+..++|+.... ......|+|+|+.++.....+. .+.-..+++||+||||++.. ..+..++..+
T Consensus 329 I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr~il~~l 399 (732)
T TIGR00603 329 ICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFRRVLTIV 399 (732)
T ss_pred EEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHHHHHHhc
Confidence 66666654321 1234689999999875322111 11124689999999998743 4555666666
Q ss_pred CCCCcEEEEEeecCcchHH--HHHhhcCCCeEEEecc-ccc----ccceeEEEEe-----------------------eh
Q 011079 291 PANRQILMFSATFPVTVKD--FKDKYLQKPYVINLMD-ELT----LKGITQYYAF-----------------------VE 340 (494)
Q Consensus 291 ~~~~~~i~~SATl~~~~~~--~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~-----------------------~~ 340 (494)
.. ...+++|||+...-.. ....+++ |.++...- +.. .........+ ..
T Consensus 400 ~a-~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~ 477 (732)
T TIGR00603 400 QA-HCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVM 477 (732)
T ss_pred Cc-CcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhh
Confidence 44 3469999997432111 1112222 22222110 000 0000000000 11
Q ss_pred hhhHHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcC-CccEEEEcCcc
Q 011079 341 ERQKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNG-ACRNLVCTDLF 417 (494)
Q Consensus 341 ~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g-~~~vlvaT~~~ 417 (494)
...|...+..++..+ ...++||||.....++.+++.| .+..+||.+++.+|.++++.|+.| ..++||+|+++
T Consensus 478 np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-----~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVg 552 (732)
T TIGR00603 478 NPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-----GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVG 552 (732)
T ss_pred ChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-----CCceEECCCCHHHHHHHHHHHHhCCCccEEEEeccc
Confidence 123555555666654 5679999999999999998887 356689999999999999999875 78999999999
Q ss_pred cccCCCCCCCEEEEcCCC-CCHHHHHHHhccccCCCCcceE-------EEEecccchH
Q 011079 418 TRGIDIQAVNVVINFDFP-KNSETYLHRVGRSGRFGHLGLA-------VNLITYEDRF 467 (494)
Q Consensus 418 ~~Gidi~~v~~VI~~~~p-~s~~~~~Qr~GRagR~g~~g~~-------~~l~~~~~~~ 467 (494)
.+|||+|++++||+++.| .|...|+||+||++|.+..|.+ |.|++.+...
T Consensus 553 deGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 553 DTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred ccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 999999999999999987 5999999999999998766655 8888876544
No 86
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-34 Score=274.22 Aligned_cols=326 Identities=18% Similarity=0.221 Sum_probs=246.6
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcH
Q 011079 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (494)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (494)
...|...+.+..-.+-+++..-...+..+.+-+..+..++-++++|+||||||++.....+++..... ..+....|+|
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~--~~v~CTQprr 101 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL--TGVACTQPRR 101 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc--cceeecCchH
Confidence 34577778888888888776555667778888888888889999999999999999888888776554 2344555999
Q ss_pred HHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEeccccc--ccC
Q 011079 199 ELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADK--LLS 276 (494)
Q Consensus 199 ~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~--~~~ 276 (494)
..|. +++.+++.+++..++..+|.....+++.. ..+-+.|||.++|++..-.+.. +..+++||+||||+ +..
T Consensus 102 vaam---sva~RVadEMDv~lG~EVGysIrfEdC~~--~~T~Lky~tDgmLlrEams~p~-l~~y~viiLDeahERtlAT 175 (699)
T KOG0925|consen 102 VAAM---SVAQRVADEMDVTLGEEVGYSIRFEDCTS--PNTLLKYCTDGMLLREAMSDPL-LGRYGVIILDEAHERTLAT 175 (699)
T ss_pred HHHH---HHHHHHHHHhccccchhccccccccccCC--hhHHHHHhcchHHHHHHhhCcc-cccccEEEechhhhhhHHH
Confidence 9994 45556666777777777777777766544 4456779999999987666554 89999999999995 333
Q ss_pred CCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeehhhhH----HHHHHHHH
Q 011079 277 PEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQK----VHCLNTLF 352 (494)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k----~~~l~~ll 352 (494)
+.+...++.++... ++.++|.||||+. ...+..|+.++.++.++...+. ..+|......+. ...+..+.
T Consensus 176 DiLmGllk~v~~~r-pdLk~vvmSatl~---a~Kfq~yf~n~Pll~vpg~~Pv---Ei~Yt~e~erDylEaairtV~qih 248 (699)
T KOG0925|consen 176 DILMGLLKEVVRNR-PDLKLVVMSATLD---AEKFQRYFGNAPLLAVPGTHPV---EIFYTPEPERDYLEAAIRTVLQIH 248 (699)
T ss_pred HHHHHHHHHHHhhC-CCceEEEeecccc---hHHHHHHhCCCCeeecCCCCce---EEEecCCCChhHHHHHHHHHHHHH
Confidence 44566677777776 5999999999976 4445566667767777662222 223333333332 33344444
Q ss_pred HhcCCCcEEEEecChhHHHHHHHHHHHc---------CCcEEEEccCCCHHHHHHHHHHhhcC-----CccEEEEcCccc
Q 011079 353 SKLQINQSIIFCNSVNRVELLAKKITEL---------GYSCFYIHAKMLQDHRNRVFHDFRNG-----ACRNLVCTDLFT 418 (494)
Q Consensus 353 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~i~~~f~~g-----~~~vlvaT~~~~ 418 (494)
....+|.+|||+++.++++..|+.+... ...++++| +.++..+|+..... .++|+|+|++++
T Consensus 249 ~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniae 324 (699)
T KOG0925|consen 249 MCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAE 324 (699)
T ss_pred hccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchh
Confidence 4557899999999999999999998853 45788888 56677777766532 578999999999
Q ss_pred ccCCCCCCCEEEEcCC------------------CCCHHHHHHHhccccCCCCcceEEEEeccc
Q 011079 419 RGIDIQAVNVVINFDF------------------PKNSETYLHRVGRSGRFGHLGLAVNLITYE 464 (494)
Q Consensus 419 ~Gidi~~v~~VI~~~~------------------p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~ 464 (494)
++++|++|.+||+.++ |.|.++..||.|||||+ .||+||+||++.
T Consensus 325 tsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 325 TSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred eeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 9999999999998776 77999999999999999 699999999964
No 87
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.1e-32 Score=279.76 Aligned_cols=329 Identities=24% Similarity=0.336 Sum_probs=243.2
Q ss_pred CCCCCcHHHHHHHHHHhcC-CcEEEEccCCCchhHHhHHHHHHhhhc-------CCCceEEEEEcCcHHHHHHHHHHHHH
Q 011079 139 GFERPSPIQEESIPIALTG-SDILARAKNGTGKTAAFCIPALEKIDQ-------DNNVIQVVILVPTRELALQTSQVCKE 210 (494)
Q Consensus 139 ~~~~~~~~Q~~~i~~~~~~-~~~ii~~~TGsGKT~~~~~~~l~~l~~-------~~~~~~~lil~P~~~la~q~~~~~~~ 210 (494)
+|..++.+|.+++|.+.+. .+.+||||||||||-.|++.+|..+.+ ..+..+++||+|.++||..+.+.+.+
T Consensus 107 ~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~k 186 (1230)
T KOG0952|consen 107 SFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSK 186 (1230)
T ss_pred cHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhh
Confidence 5778999999999998865 579999999999999999999998875 23556899999999999998887777
Q ss_pred HhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCC---ccccccceEEecccccccCCCcHHHHHHHH
Q 011079 211 LGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGV---CILKDCSMLVMDEADKLLSPEFQPSVEQLI 287 (494)
Q Consensus 211 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~---~~l~~~~~iViDEah~~~~~~~~~~~~~~~ 287 (494)
.....|+.|..++|+....... ...++|+|+||+++.-..+++. ..+..+.+|||||+|.+ ..+.++.++.++
T Consensus 187 kl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlL-hd~RGpvlEtiV 262 (1230)
T KOG0952|consen 187 KLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLL-HDDRGPVLETIV 262 (1230)
T ss_pred hcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhh-cCcccchHHHHH
Confidence 7778899999999998876543 2568999999999866555432 33677899999999965 556788888876
Q ss_pred HHC-------CCCCcEEEEEeecCcchHHHHHhhcCC--CeEEEecccccccceeEEEEeehhh---hHH-----HHHHH
Q 011079 288 RFL-------PANRQILMFSATFPVTVKDFKDKYLQK--PYVINLMDELTLKGITQYYAFVEER---QKV-----HCLNT 350 (494)
Q Consensus 288 ~~~-------~~~~~~i~~SATl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~k~-----~~l~~ 350 (494)
.+. ....+++++|||+|. ..+.+...--+ ..+..+...+.+..+.+.+.-.... ... -...+
T Consensus 263 aRtlr~vessqs~IRivgLSATlPN-~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~k 341 (1230)
T KOG0952|consen 263 ARTLRLVESSQSMIRIVGLSATLPN-YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDK 341 (1230)
T ss_pred HHHHHHHHhhhhheEEEEeeccCCC-HHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHH
Confidence 554 356889999999983 33433333223 2233444444444454444333222 111 11122
Q ss_pred HHHhc-CCCcEEEEecChhHHHHHHHHHHHc-----------------------CCcEEEEccCCCHHHHHHHHHHhhcC
Q 011079 351 LFSKL-QINQSIIFCNSVNRVELLAKKITEL-----------------------GYSCFYIHAKMLQDHRNRVFHDFRNG 406 (494)
Q Consensus 351 ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~-----------------------~~~~~~~~~~~~~~~r~~i~~~f~~g 406 (494)
+.+.. .+.+++|||.++..+...|+.|.+. ......+|++|..++|..+.+.|..|
T Consensus 342 v~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G 421 (1230)
T KOG0952|consen 342 VVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEG 421 (1230)
T ss_pred HHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcC
Confidence 22222 4568999999999999999988763 13467889999999999999999999
Q ss_pred CccEEEEcCcccccCCCCCCCEEE----EcCCCC------CHHHHHHHhccccC--CCCcceEEEEecccchHHHHHH
Q 011079 407 ACRNLVCTDLFTRGIDIQAVNVVI----NFDFPK------NSETYLHRVGRSGR--FGHLGLAVNLITYEDRFNLYRI 472 (494)
Q Consensus 407 ~~~vlvaT~~~~~Gidi~~v~~VI----~~~~p~------s~~~~~Qr~GRagR--~g~~g~~~~l~~~~~~~~~~~l 472 (494)
..+||+||..++.|+++|+-.++| .||... ++-+.+|..||||| .+..|.++++.+.+....+..+
T Consensus 422 ~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sL 499 (1230)
T KOG0952|consen 422 HIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESL 499 (1230)
T ss_pred CceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHH
Confidence 999999999999999999766555 233322 67788999999999 4556877776666544444443
No 88
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.5e-30 Score=277.58 Aligned_cols=332 Identities=17% Similarity=0.189 Sum_probs=218.5
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEE
Q 011079 142 RPSPIQEESIPIALTG--SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQV 219 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~ 219 (494)
.|.|+|..++..++.. ..+++..++|.|||..+.+.+...+.. +...++|||||. .|..||...+.+.. ++..
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~-g~~~rvLIVvP~-sL~~QW~~El~~kF---~l~~ 226 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT-GRAERVLILVPE-TLQHQWLVEMLRRF---NLRF 226 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-CCCCcEEEEcCH-HHHHHHHHHHHHHh---CCCe
Confidence 5899999998877654 359999999999999976655554443 334489999997 78888877665433 3444
Q ss_pred EEEECCCChHH--HHHHhcCCCeEEEEchHHHHHhHhc-CCccccccceEEecccccccCCC--cHHHHHHHHHHCCCCC
Q 011079 220 MVTTGGTSLKD--DIMRLYQPVHLLVGTPGRILDLSKK-GVCILKDCSMLVMDEADKLLSPE--FQPSVEQLIRFLPANR 294 (494)
Q Consensus 220 ~~~~g~~~~~~--~~~~~~~~~~Ilv~T~~~l~~~~~~-~~~~l~~~~~iViDEah~~~~~~--~~~~~~~~~~~~~~~~ 294 (494)
..+.+...... .........+++|+|.+.+...-.. ....-..+++||+||||++.... -...++.+........
T Consensus 227 ~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~ 306 (956)
T PRK04914 227 SLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIP 306 (956)
T ss_pred EEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccC
Confidence 43333221110 0001223468999999987642110 11223478999999999986311 1122333322222345
Q ss_pred cEEEEEeecCc-------------------chHHHH------------------------------HhhcCCC-------
Q 011079 295 QILMFSATFPV-------------------TVKDFK------------------------------DKYLQKP------- 318 (494)
Q Consensus 295 ~~i~~SATl~~-------------------~~~~~~------------------------------~~~~~~~------- 318 (494)
.++++|||+-. +...|. ..++.+.
T Consensus 307 ~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~ 386 (956)
T PRK04914 307 GVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQ 386 (956)
T ss_pred CEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHh
Confidence 68999999510 000000 0011100
Q ss_pred ----------------------------eEE-Eec---ccccccceeEEEE-----------------------------
Q 011079 319 ----------------------------YVI-NLM---DELTLKGITQYYA----------------------------- 337 (494)
Q Consensus 319 ----------------------------~~~-~~~---~~~~~~~~~~~~~----------------------------- 337 (494)
..+ +.. ..++...+.....
T Consensus 387 ~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~~~~ 466 (956)
T PRK04914 387 AANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQIYQ 466 (956)
T ss_pred hhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHHHHH
Confidence 000 000 0000000000000
Q ss_pred -------eehhhhHHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHH-HHcCCcEEEEccCCCHHHHHHHHHHhhcC--C
Q 011079 338 -------FVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKI-TELGYSCFYIHAKMLQDHRNRVFHDFRNG--A 407 (494)
Q Consensus 338 -------~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~r~~i~~~f~~g--~ 407 (494)
+.....|.+.|..++......++||||+++..+..+++.| ...|+.+..+||+|++.+|.++++.|+++ .
T Consensus 467 ~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~ 546 (956)
T PRK04914 467 EFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDG 546 (956)
T ss_pred HHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCC
Confidence 1111235667777777777789999999999999999999 46699999999999999999999999974 6
Q ss_pred ccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCC
Q 011079 408 CRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGT 478 (494)
Q Consensus 408 ~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~ 478 (494)
..|||||+++++|+|++.+++||+||+|+++..|.||+||++|.|+.+.+.+++...+......+.+.+..
T Consensus 547 ~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 547 AQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred ccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999887666654443345555555555
No 89
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.98 E-value=9e-30 Score=268.32 Aligned_cols=304 Identities=18% Similarity=0.228 Sum_probs=210.9
Q ss_pred CCcHHHHHHHHHHhcC---CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcE
Q 011079 142 RPSPIQEESIPIALTG---SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQ 218 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~---~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~ 218 (494)
.+++.|.++++.+.++ +++++.|+||||||.+|+.++...+.. +.++||++|+++|+.|+.+.+++.. +..
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~~vLvLvPt~~L~~Q~~~~l~~~f---g~~ 217 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GKQALVLVPEIALTPQMLARFRARF---GAP 217 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHh---CCC
Confidence 5899999999999874 679999999999999998888777654 3489999999999999988887643 567
Q ss_pred EEEEECCCChHHHHH---H-hcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCC-----c-HHHHHHHHH
Q 011079 219 VMVTTGGTSLKDDIM---R-LYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE-----F-QPSVEQLIR 288 (494)
Q Consensus 219 ~~~~~g~~~~~~~~~---~-~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~-----~-~~~~~~~~~ 288 (494)
+..++|+.+..+... . .....+|+|+|++.+. ..+.++++||+||+|...... + ...+ .+.+
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v-a~~r 289 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDL-AVVR 289 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHH-HHHH
Confidence 888888876544322 2 2346799999998763 347889999999999754221 1 1112 2233
Q ss_pred HCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeehhh----------hHHHHHHHHHHhcC-C
Q 011079 289 FLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEER----------QKVHCLNTLFSKLQ-I 357 (494)
Q Consensus 289 ~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~k~~~l~~ll~~~~-~ 357 (494)
....+.++|++|||++.+. +....-+....+.+........+... ..++.. .....+..+-+... .
T Consensus 290 a~~~~~~~il~SATps~~s--~~~~~~g~~~~~~l~~r~~~~~~p~v-~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g 366 (679)
T PRK05580 290 AKLENIPVVLGSATPSLES--LANAQQGRYRLLRLTKRAGGARLPEV-EIIDMRELLRGENGSFLSPPLLEAIKQRLERG 366 (679)
T ss_pred hhccCCCEEEEcCCCCHHH--HHHHhccceeEEEeccccccCCCCeE-EEEechhhhhhcccCCCCHHHHHHHHHHHHcC
Confidence 4456889999999976333 32222223333333322211111111 111100 00112222222333 3
Q ss_pred CcEEEEecCh------------------------------------------------------------hHHHHHHHHH
Q 011079 358 NQSIIFCNSV------------------------------------------------------------NRVELLAKKI 377 (494)
Q Consensus 358 ~~~lVF~~~~------------------------------------------------------------~~~~~l~~~L 377 (494)
.++|||++.+ ..++.+++.|
T Consensus 367 ~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l 446 (679)
T PRK05580 367 EQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEEL 446 (679)
T ss_pred CeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHH
Confidence 4788887742 1456777777
Q ss_pred HHc--CCcEEEEccCCC--HHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEE--cCCCCC----------HHHH
Q 011079 378 TEL--GYSCFYIHAKML--QDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVIN--FDFPKN----------SETY 441 (494)
Q Consensus 378 ~~~--~~~~~~~~~~~~--~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~--~~~p~s----------~~~~ 441 (494)
.+. +.++..+|+++. ..+++++++.|++|+.+|||+|+++++|+|+|++.+|+. .|.+.+ ...|
T Consensus 447 ~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l 526 (679)
T PRK05580 447 AELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLL 526 (679)
T ss_pred HHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHH
Confidence 776 778999999986 457899999999999999999999999999999999864 444433 3578
Q ss_pred HHHhccccCCCCcceEEEEec
Q 011079 442 LHRVGRSGRFGHLGLAVNLIT 462 (494)
Q Consensus 442 ~Qr~GRagR~g~~g~~~~l~~ 462 (494)
.|++||+||.+..|.+++...
T Consensus 527 ~q~~GRagR~~~~g~viiqT~ 547 (679)
T PRK05580 527 TQVAGRAGRAEKPGEVLIQTY 547 (679)
T ss_pred HHHHhhccCCCCCCEEEEEeC
Confidence 999999999999999986554
No 90
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.98 E-value=1.7e-30 Score=236.78 Aligned_cols=200 Identities=47% Similarity=0.808 Sum_probs=183.3
Q ss_pred ccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcC--CCceEEEEEcCcHH
Q 011079 122 FEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD--NNVIQVVILVPTRE 199 (494)
Q Consensus 122 ~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~--~~~~~~lil~P~~~ 199 (494)
|.++++++.+.+.+.+.|+..|+++|.++++.+.+++++++++|||+|||++|++|++..+... ..+++++|++|+++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 5788999999999999999999999999999999999999999999999999999999998876 56679999999999
Q ss_pred HHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCc
Q 011079 200 LALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEF 279 (494)
Q Consensus 200 la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~ 279 (494)
|+.|+...+..+....++.+..+.|+....+....+..+++|+|+||+.+...+.+....+.+++++|+||+|.+.+..+
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~ 160 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGF 160 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccCh
Confidence 99999999999988788999999999888777666666899999999999998888777789999999999999888889
Q ss_pred HHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEE
Q 011079 280 QPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVI 321 (494)
Q Consensus 280 ~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~ 321 (494)
...+..+...++.+++++++|||+++.+..+...++.++..+
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 161 EDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred HHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 999999999998899999999999999999999999888654
No 91
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=1.1e-29 Score=266.93 Aligned_cols=321 Identities=25% Similarity=0.244 Sum_probs=258.3
Q ss_pred CCCHHHHHHHHHC-CCCCCcHHHHHHHHHHhcC------CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcH
Q 011079 126 FLKRELLMGIFEK-GFERPSPIQEESIPIALTG------SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (494)
Q Consensus 126 ~l~~~l~~~l~~~-~~~~~~~~Q~~~i~~~~~~------~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (494)
..+.+....+.+. .| .-|+-|..||..+.+. .|-+|||..|-|||-+++-+++..+..+ .+|.|+|||.
T Consensus 578 ~~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G---KQVAvLVPTT 653 (1139)
T COG1197 578 PPDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG---KQVAVLVPTT 653 (1139)
T ss_pred CCChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC---CeEEEEcccH
Confidence 4455555555443 33 5799999999998753 4789999999999999998888877654 4999999999
Q ss_pred HHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHh----cCCCeEEEEchHHHHHhHhcCCccccccceEEecccccc
Q 011079 199 ELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL----YQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKL 274 (494)
Q Consensus 199 ~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~ 274 (494)
.||+|.++.+++....+.+++..++...+.+++...+ ....+|+|+|.-- +.+ ...+++++++||||-|+
T Consensus 654 lLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrL----L~k-dv~FkdLGLlIIDEEqR- 727 (1139)
T COG1197 654 LLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRL----LSK-DVKFKDLGLLIIDEEQR- 727 (1139)
T ss_pred HhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHh----hCC-CcEEecCCeEEEechhh-
Confidence 9999999999999999999999999888877665443 2468999999743 333 34589999999999998
Q ss_pred cCCCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeehh-hhHHHHHHHHHH
Q 011079 275 LSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEE-RQKVHCLNTLFS 353 (494)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~ll~ 353 (494)
|+-.-++-++.++.+.-++-||||+-+....+.-.-+.+-.++..++....+ +..++...+. -.+..++.++
T Consensus 728 ----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~p-V~T~V~~~d~~~ireAI~REl-- 800 (1139)
T COG1197 728 ----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLP-VKTFVSEYDDLLIREAILREL-- 800 (1139)
T ss_pred ----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcc-eEEEEecCChHHHHHHHHHHH--
Confidence 5666677788888899999999998778878777777776666655443333 2333332222 2233333333
Q ss_pred hcCCCcEEEEecChhHHHHHHHHHHHc--CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEE
Q 011079 354 KLQINQSIIFCNSVNRVELLAKKITEL--GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVIN 431 (494)
Q Consensus 354 ~~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~ 431 (494)
...|++...+|.++.++.+++.|.++ ...+.+.||.|+..+-+.++..|-+|.++|||||.+.++|||||+++.+|.
T Consensus 801 -~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII 879 (1139)
T COG1197 801 -LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIII 879 (1139)
T ss_pred -hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE
Confidence 36789999999999999999999987 667999999999999999999999999999999999999999999999886
Q ss_pred cCCC-CCHHHHHHHhccccCCCCcceEEEEeccc
Q 011079 432 FDFP-KNSETYLHRVGRSGRFGHLGLAVNLITYE 464 (494)
Q Consensus 432 ~~~p-~s~~~~~Qr~GRagR~g~~g~~~~l~~~~ 464 (494)
.+.. ...++..|..||+||..+.+.||.+|.+.
T Consensus 880 e~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 880 ERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred eccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 6544 57899999999999999999999999964
No 92
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=2.1e-29 Score=251.48 Aligned_cols=332 Identities=19% Similarity=0.244 Sum_probs=242.6
Q ss_pred cCCCHHHHHHH-HHCCCCCCcHHHHHHHHHHhcC------CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCc
Q 011079 125 YFLKRELLMGI-FEKGFERPSPIQEESIPIALTG------SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPT 197 (494)
Q Consensus 125 ~~l~~~l~~~l-~~~~~~~~~~~Q~~~i~~~~~~------~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~ 197 (494)
+....++++.+ ....| .+|..|..++..|... .+-++.|..|||||.+++++++..+..+ .++...+||
T Consensus 245 ~~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G---~Q~ALMAPT 320 (677)
T COG1200 245 LPANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG---YQAALMAPT 320 (677)
T ss_pred CCccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC---CeeEEeccH
Confidence 33444444444 45567 7999999999999864 2468999999999999999998887654 389999999
Q ss_pred HHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHH---HHhc-CCCeEEEEchHHHHHhHhcCCccccccceEEeccccc
Q 011079 198 RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDI---MRLY-QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADK 273 (494)
Q Consensus 198 ~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~-~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~ 273 (494)
..||.|.+..+.++...++++|..++|...-.... ..+. ...+|+|+|..-+. +...+.++.++|+||=|+
T Consensus 321 EILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ-----d~V~F~~LgLVIiDEQHR 395 (677)
T COG1200 321 EILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ-----DKVEFHNLGLVIIDEQHR 395 (677)
T ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh-----cceeecceeEEEEecccc
Confidence 99999999999999999999999999987655433 2233 35899999985433 345589999999999998
Q ss_pred ccCCCcHHHHHHHHHHCCC-CCcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeehhhhHHHHHHHHH
Q 011079 274 LLSPEFQPSVEQLIRFLPA-NRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLF 352 (494)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~-~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll 352 (494)
|+-.-+..+..... .+-+++||||+-+....+.. +.+-. +.+.++.+...-.-...++....+...+..+.
T Consensus 396 -----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~--fgDld-vS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~ 467 (677)
T COG1200 396 -----FGVHQRLALREKGEQNPHVLVMTATPIPRTLALTA--FGDLD-VSIIDELPPGRKPITTVVIPHERRPEVYERIR 467 (677)
T ss_pred -----ccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHH--hcccc-chhhccCCCCCCceEEEEeccccHHHHHHHHH
Confidence 55555555555555 67899999997544433322 22222 12222322221111112233333333333343
Q ss_pred Hhc-CCCcEEEEecChhHHH--------HHHHHHHHc--CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccC
Q 011079 353 SKL-QINQSIIFCNSVNRVE--------LLAKKITEL--GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGI 421 (494)
Q Consensus 353 ~~~-~~~~~lVF~~~~~~~~--------~l~~~L~~~--~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gi 421 (494)
... .+.++.|.||-.++.+ .+++.|... ++++..+||.|+..++..++.+|++|+.+|||||.+.+.||
T Consensus 468 ~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGV 547 (677)
T COG1200 468 EEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGV 547 (677)
T ss_pred HHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecc
Confidence 333 4568999999877654 455666643 56799999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCC-CCHHHHHHHhccccCCCCcceEEEEecccc-hHHHHHHH
Q 011079 422 DIQAVNVVINFDFP-KNSETYLHRVGRSGRFGHLGLAVNLITYED-RFNLYRIE 473 (494)
Q Consensus 422 di~~v~~VI~~~~p-~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~-~~~~~~l~ 473 (494)
|+|+.++.|..+.- ...++.-|-.||+||.+..+.|+++|.+.. ...-.++.
T Consensus 548 dVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~ 601 (677)
T COG1200 548 DVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLK 601 (677)
T ss_pred cCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHH
Confidence 99999998877753 477888999999999999999999999765 33334443
No 93
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=7.4e-30 Score=265.24 Aligned_cols=315 Identities=19% Similarity=0.229 Sum_probs=226.4
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEE
Q 011079 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~ 221 (494)
.++++|.-.--.+..|+ |+.++||+|||++|.+|++..+..+. .|+|++|++.||.|.++++..+...+|+.+++
T Consensus 82 ~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G~---~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~ 156 (896)
T PRK13104 82 RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISGR---GVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGV 156 (896)
T ss_pred CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhcCC---CEEEEcCCHHHHHHHHHHHHHHhcccCceEEE
Confidence 57778866655555554 89999999999999999997765432 58999999999999999999999999999999
Q ss_pred EECCCChHHHHHHhcCCCeEEEEchHHH-HHhHhcC-Cccc-----cccceEEecccccccCCC----------------
Q 011079 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRI-LDLSKKG-VCIL-----KDCSMLVMDEADKLLSPE---------------- 278 (494)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~-~~~l-----~~~~~iViDEah~~~~~~---------------- 278 (494)
++|+.........+ .++|+|+||+.| +++++.. ...+ ..+.++||||||.|+-+.
T Consensus 157 i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~~~~~ 234 (896)
T PRK13104 157 IYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAEDSSE 234 (896)
T ss_pred EeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCccchH
Confidence 99998776654443 589999999999 8887765 2223 589999999999875100
Q ss_pred cHHHHHHHHHHCCC--------------CC--------------------------------------------------
Q 011079 279 FQPSVEQLIRFLPA--------------NR-------------------------------------------------- 294 (494)
Q Consensus 279 ~~~~~~~~~~~~~~--------------~~-------------------------------------------------- 294 (494)
+...+..++..+.. ..
T Consensus 235 ~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~~l 314 (896)
T PRK13104 235 LYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALKAHAM 314 (896)
T ss_pred HHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHHHHHH
Confidence 11111111121111 01
Q ss_pred ------------------------------------------------------------------cEEEEEeecCcchH
Q 011079 295 ------------------------------------------------------------------QILMFSATFPVTVK 308 (494)
Q Consensus 295 ------------------------------------------------------------------~~i~~SATl~~~~~ 308 (494)
++-+||+|......
T Consensus 315 f~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~ 394 (896)
T PRK13104 315 FHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTEAY 394 (896)
T ss_pred hcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChhHHH
Confidence 22333333332222
Q ss_pred HHHHhhcCCCeEEEeccccccc-ceeEEEEeehhhhHHHHHHHHHHh--cCCCcEEEEecChhHHHHHHHHHHHcCCcEE
Q 011079 309 DFKDKYLQKPYVINLMDELTLK-GITQYYAFVEERQKVHCLNTLFSK--LQINQSIIFCNSVNRVELLAKKITELGYSCF 385 (494)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~ 385 (494)
+|...|--+ ++.++...+.. .-.....+.....|...+..-+.. ....|+||||++++.++.+++.|.+.++.+.
T Consensus 395 Ef~~iY~l~--Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~ 472 (896)
T PRK13104 395 EFQQIYNLE--VVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQ 472 (896)
T ss_pred HHHHHhCCC--EEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeE
Confidence 332222211 11121111110 001112334455566665555432 3566999999999999999999999999999
Q ss_pred EEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCC--------------------------------------C
Q 011079 386 YIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAV--------------------------------------N 427 (494)
Q Consensus 386 ~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v--------------------------------------~ 427 (494)
.+|+.+.+.++..+.+.|++|. |+||||+|+||+||.=- =
T Consensus 473 vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL 550 (896)
T PRK13104 473 VLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGL 550 (896)
T ss_pred eecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCC
Confidence 9999999999999999999995 99999999999998721 2
Q ss_pred EEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchH
Q 011079 428 VVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRF 467 (494)
Q Consensus 428 ~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~ 467 (494)
+||-...+.|..--.|-.|||||-|.||.+-.|++-+|..
T Consensus 551 ~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l 590 (896)
T PRK13104 551 RIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNL 590 (896)
T ss_pred EEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHH
Confidence 6888888888888899999999999999999999966544
No 94
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=5.7e-30 Score=257.57 Aligned_cols=290 Identities=21% Similarity=0.273 Sum_probs=202.6
Q ss_pred CCcHHHHHHHHHHhc----CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011079 142 RPSPIQEESIPIALT----GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI 217 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~----~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (494)
.++++|.+++..+.. ++..++++|||+|||.+++..+..... .+|||||+++|+.||.+.+....... .
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~------~~Lvlv~~~~L~~Qw~~~~~~~~~~~-~ 108 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR------STLVLVPTKELLDQWAEALKKFLLLN-D 108 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC------CEEEEECcHHHHHHHHHHHHHhcCCc-c
Confidence 699999999999998 788999999999999986655544321 39999999999999986655554321 2
Q ss_pred EEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEE
Q 011079 218 QVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQIL 297 (494)
Q Consensus 218 ~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i 297 (494)
.++.+.|+..... . ..|.|+|.+.+.............+++||+||||++....+. .+...+.....++
T Consensus 109 ~~g~~~~~~~~~~------~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~----~~~~~~~~~~~~L 177 (442)
T COG1061 109 EIGIYGGGEKELE------P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYR----RILELLSAAYPRL 177 (442)
T ss_pred ccceecCceeccC------C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHH----HHHHhhhccccee
Confidence 3444444433221 1 469999999987742111233447999999999998665544 3333333222289
Q ss_pred EEEeecCcchHH---HHH------------------hhcCCCeEEEecccccccceeEE---E-----------------
Q 011079 298 MFSATFPVTVKD---FKD------------------KYLQKPYVINLMDELTLKGITQY---Y----------------- 336 (494)
Q Consensus 298 ~~SATl~~~~~~---~~~------------------~~~~~~~~~~~~~~~~~~~~~~~---~----------------- 336 (494)
+||||++..-.. ... .++.++.+..+...........+ .
T Consensus 178 GLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (442)
T COG1061 178 GLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAEN 257 (442)
T ss_pred eeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHH
Confidence 999997532211 111 11111111111110000000000 0
Q ss_pred ----EeehhhhHHHHHHHHHHhc-CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEE
Q 011079 337 ----AFVEERQKVHCLNTLFSKL-QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNL 411 (494)
Q Consensus 337 ----~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vl 411 (494)
.......+...+..++..+ ...+++|||....++..++..|...++ +..+.+..+..+|..+++.|+.|..++|
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~l 336 (442)
T COG1061 258 EARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVL 336 (442)
T ss_pred HHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEE
Confidence 0001122334444455444 356999999999999999999988877 8899999999999999999999999999
Q ss_pred EEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccC
Q 011079 412 VCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGR 450 (494)
Q Consensus 412 vaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR 450 (494)
|++.++.+|+|+|+++++|......|...|.||+||.-|
T Consensus 337 v~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 337 VTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred EEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 999999999999999999999999999999999999999
No 95
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=5.9e-29 Score=263.92 Aligned_cols=308 Identities=20% Similarity=0.274 Sum_probs=202.0
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccC--CcE
Q 011079 141 ERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHL--NIQ 218 (494)
Q Consensus 141 ~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~--~~~ 218 (494)
..|+|+|..+........-++|.+|||+|||.+++.++...+ ..+...+++|..||++.+.++++.+.++.... ...
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~-~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~ 363 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLI-DQGLADSIIFALPTQATANAMLSRLEALASKLFPSPN 363 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHH-HhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 389999998865544455689999999999999777665433 33334588999999999999998877644322 345
Q ss_pred EEEEECCCChHHHH---------------------HHhc---C---CCeEEEEchHHHHHhHh-cCCcccccc----ceE
Q 011079 219 VMVTTGGTSLKDDI---------------------MRLY---Q---PVHLLVGTPGRILDLSK-KGVCILKDC----SML 266 (494)
Q Consensus 219 ~~~~~g~~~~~~~~---------------------~~~~---~---~~~Ilv~T~~~l~~~~~-~~~~~l~~~----~~i 266 (494)
+...+|........ ..+. + -..|+|||...++.-.. .....+..+ ++|
T Consensus 364 v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svv 443 (878)
T PRK09694 364 LILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVL 443 (878)
T ss_pred eEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeE
Confidence 66666654322110 0111 1 26899999998875322 211222333 589
Q ss_pred EecccccccCCCcHHHHHHHHHHC-CCCCcEEEEEeecCcchHHHHHhhcCCC--------e-EEEecc-----ccccc-
Q 011079 267 VMDEADKLLSPEFQPSVEQLIRFL-PANRQILMFSATFPVTVKDFKDKYLQKP--------Y-VINLMD-----ELTLK- 330 (494)
Q Consensus 267 ViDEah~~~~~~~~~~~~~~~~~~-~~~~~~i~~SATl~~~~~~~~~~~~~~~--------~-~~~~~~-----~~~~~- 330 (494)
||||+|.+ +......+..+++.+ .....+|+||||+|....+.....+... + .+.... .....
T Consensus 444 IiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~ 522 (878)
T PRK09694 444 IVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSA 522 (878)
T ss_pred EEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeeccc
Confidence 99999976 333445556666554 2356799999999977665433221110 0 000000 00000
Q ss_pred -----ceeEEEE--ee--hh-hhHHHHHHHHHHhc-CCCcEEEEecChhHHHHHHHHHHHcC---CcEEEEccCCCHHHH
Q 011079 331 -----GITQYYA--FV--EE-RQKVHCLNTLFSKL-QINQSIIFCNSVNRVELLAKKITELG---YSCFYIHAKMLQDHR 396 (494)
Q Consensus 331 -----~~~~~~~--~~--~~-~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r 396 (494)
....... .. .. ......+..++... ..+++|||||+++.++.+++.|.+.. ..+..+||.++..+|
T Consensus 523 ~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR 602 (878)
T PRK09694 523 HPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDR 602 (878)
T ss_pred cccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHH
Confidence 0000000 00 11 11233444444433 45689999999999999999999764 679999999999999
Q ss_pred ----HHHHHHh-hcCC---ccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCC
Q 011079 397 ----NRVFHDF-RNGA---CRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGH 453 (494)
Q Consensus 397 ----~~i~~~f-~~g~---~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~ 453 (494)
+++++.| ++|+ ..|||||++++.|+|| +++++|....| .+.++||+||++|.+.
T Consensus 603 ~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 603 REKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 4567788 6666 3799999999999999 68999987777 5899999999999764
No 96
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=5.8e-31 Score=260.22 Aligned_cols=307 Identities=22% Similarity=0.313 Sum_probs=239.4
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEE
Q 011079 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~ 221 (494)
.+-|+|..+|..+-.+..++++|.|.+|||.++..++...+.... ||+|..|-++|..|-++.+..-.. .|+.
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ---RVIYTSPIKALSNQKYREl~~EF~----DVGL 201 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ---RVIYTSPIKALSNQKYRELLEEFK----DVGL 201 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcC---eEEeeChhhhhcchhHHHHHHHhc----ccce
Confidence 577999999999999999999999999999999999988887655 899999999999998877655443 4666
Q ss_pred EECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEe
Q 011079 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSA 301 (494)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 301 (494)
.+|+..+. ..+..+|||++.|..++.++...+..+.+||+||+|.|-+...+-.|+..+-.+|++.+.+++||
T Consensus 202 MTGDVTIn-------P~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSA 274 (1041)
T KOG0948|consen 202 MTGDVTIN-------PDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSA 274 (1041)
T ss_pred eecceeeC-------CCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEec
Confidence 77876655 66789999999999999999888999999999999999999988889999999999999999999
Q ss_pred ecCcchHHHHHhh---cCCCeEEEecccccccceeEE---------EEeehhhh--------------------------
Q 011079 302 TFPVTVKDFKDKY---LQKPYVINLMDELTLKGITQY---------YAFVEERQ-------------------------- 343 (494)
Q Consensus 302 Tl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-------------------------- 343 (494)
|+|. ..+|+... -..|. ..+..++.+-.+.++ |..+++..
T Consensus 275 TiPN-A~qFAeWI~~ihkQPc-HVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~ 352 (1041)
T KOG0948|consen 275 TIPN-ARQFAEWICHIHKQPC-HVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKA 352 (1041)
T ss_pred cCCC-HHHHHHHHHHHhcCCc-eEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcccccc
Confidence 9985 44444432 22232 222222222223332 12222211
Q ss_pred -----------------HHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHc--------------------------
Q 011079 344 -----------------KVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITEL-------------------------- 380 (494)
Q Consensus 344 -----------------k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~-------------------------- 380 (494)
.+-.+..++-.....++|||+.++++|+.+|-.+.++
T Consensus 353 ~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeD 432 (1041)
T KOG0948|consen 353 NKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEED 432 (1041)
T ss_pred ccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhh
Confidence 1112333333334568999999999999999887762
Q ss_pred -------------CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEE----cCC----CCCHH
Q 011079 381 -------------GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVIN----FDF----PKNSE 439 (494)
Q Consensus 381 -------------~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~----~~~----p~s~~ 439 (494)
...+..+||++-+--++.|.-.|.+|-.+||+||..++.|+|.|+-++|+- ||- -.|..
T Consensus 433 r~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissG 512 (1041)
T KOG0948|consen 433 RELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSG 512 (1041)
T ss_pred ccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeeccc
Confidence 235788999999999999999999999999999999999999998777762 111 12677
Q ss_pred HHHHHhccccCCCC--cceEEEEeccc
Q 011079 440 TYLHRVGRSGRFGH--LGLAVNLITYE 464 (494)
Q Consensus 440 ~~~Qr~GRagR~g~--~g~~~~l~~~~ 464 (494)
+|+|++|||||.|. .|.|++++++.
T Consensus 513 EYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 513 EYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred ceEEecccccccCCCCCceEEEEecCc
Confidence 99999999999886 49999999864
No 97
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=1.2e-29 Score=256.73 Aligned_cols=305 Identities=21% Similarity=0.262 Sum_probs=230.1
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEE
Q 011079 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~ 221 (494)
.+-.+|++||-++..|..++|.|+|.+|||.++..++...-. .+.+++|.+|-++|..|-++.++......| .
T Consensus 297 elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~---h~TR~iYTSPIKALSNQKfRDFk~tF~Dvg----L 369 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK---HMTRTIYTSPIKALSNQKFRDFKETFGDVG----L 369 (1248)
T ss_pred CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh---hccceEecchhhhhccchHHHHHHhccccc----e
Confidence 677899999999999999999999999999997766654322 345899999999999999999888765444 6
Q ss_pred EECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEe
Q 011079 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSA 301 (494)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 301 (494)
++|+..+. ....++|||++.|..++.++.....++.+||+||+|.+.+...+-.|++++-.+|...++|++||
T Consensus 370 lTGDvqin-------PeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSA 442 (1248)
T KOG0947|consen 370 LTGDVQIN-------PEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSA 442 (1248)
T ss_pred eecceeeC-------CCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceEEEEec
Confidence 88887665 66789999999999999998888899999999999999999999999999999999999999999
Q ss_pred ecCcchHHHHHhhcC-CCeEEEeccc-ccccceeEEEEee----------------------------------------
Q 011079 302 TFPVTVKDFKDKYLQ-KPYVINLMDE-LTLKGITQYYAFV---------------------------------------- 339 (494)
Q Consensus 302 Tl~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~---------------------------------------- 339 (494)
|.|.. .+|+...-. +...+.+... ..+..+.++....
T Consensus 443 TVPN~-~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~ 521 (1248)
T KOG0947|consen 443 TVPNT-LEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDAR 521 (1248)
T ss_pred cCCCh-HHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccccccccc
Confidence 98754 344333211 1111111111 0111111110000
Q ss_pred ------------------------hh-hhHHHHHHHHHHh---cCCCcEEEEecChhHHHHHHHHHHHc-----------
Q 011079 340 ------------------------EE-RQKVHCLNTLFSK---LQINQSIIFCNSVNRVELLAKKITEL----------- 380 (494)
Q Consensus 340 ------------------------~~-~~k~~~l~~ll~~---~~~~~~lVF~~~~~~~~~l~~~L~~~----------- 380 (494)
.. +.+-.....++.. ...-++||||.+++.|+..++.|...
T Consensus 522 ~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV 601 (1248)
T KOG0947|consen 522 GGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEV 601 (1248)
T ss_pred ccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHH
Confidence 00 0000123333333 33458999999999999999998752
Q ss_pred ----------------------------CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEc
Q 011079 381 ----------------------------GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINF 432 (494)
Q Consensus 381 ----------------------------~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~ 432 (494)
...++++||++-+--++-+...|..|-.+||+||..+++|+|.|.-.+|+.
T Consensus 602 ~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~- 680 (1248)
T KOG0947|consen 602 HLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFS- 680 (1248)
T ss_pred HHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEee-
Confidence 225889999999999999999999999999999999999999998777763
Q ss_pred CC---------CCCHHHHHHHhccccCCCCc--ceEEEEec
Q 011079 433 DF---------PKNSETYLHRVGRSGRFGHL--GLAVNLIT 462 (494)
Q Consensus 433 ~~---------p~s~~~~~Qr~GRagR~g~~--g~~~~l~~ 462 (494)
++ -..+.+|.|++|||||.|-. |.++++..
T Consensus 681 Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~ 721 (1248)
T KOG0947|consen 681 SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCK 721 (1248)
T ss_pred ehhhccCcceeecCChhHHhhhccccccccCcCceEEEEec
Confidence 22 22678999999999998754 66665554
No 98
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=4.1e-29 Score=262.53 Aligned_cols=317 Identities=23% Similarity=0.260 Sum_probs=239.0
Q ss_pred HHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccC
Q 011079 136 FEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHL 215 (494)
Q Consensus 136 ~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~ 215 (494)
...+| .+-++|++++..+..+..+++++|||+|||.+...++...+.... +++|.+|.++|..|.++.+.......
T Consensus 114 ~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~q---rviYTsPIKALsNQKyrdl~~~fgdv 189 (1041)
T COG4581 114 REYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQ---RVIYTSPIKALSNQKYRDLLAKFGDV 189 (1041)
T ss_pred HhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCC---ceEeccchhhhhhhHHHHHHHHhhhh
Confidence 34455 688999999999999999999999999999998888877776554 69999999999999988776554433
Q ss_pred CcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCc
Q 011079 216 NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQ 295 (494)
Q Consensus 216 ~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~ 295 (494)
.--++.++|+..+. ..+.++|||.+.|..++..+...+..+..||+||+|.|.+...+..++.++-.+|...+
T Consensus 190 ~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~ 262 (1041)
T COG4581 190 ADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVR 262 (1041)
T ss_pred hhhccceecceeeC-------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCCc
Confidence 33467788887766 77899999999999999998888999999999999999999999999999999999999
Q ss_pred EEEEEeecCcchHHHHHhhc--CCCeEEEecccccccceeEEEE-------eehhhhH----------------------
Q 011079 296 ILMFSATFPVTVKDFKDKYL--QKPYVINLMDELTLKGITQYYA-------FVEERQK---------------------- 344 (494)
Q Consensus 296 ~i~~SATl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~k---------------------- 344 (494)
+++||||+|.. .+|...+- ....+..+..+..+..+.+++. .++...+
T Consensus 263 ~v~LSATv~N~-~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~ 341 (1041)
T COG4581 263 FVFLSATVPNA-EEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRE 341 (1041)
T ss_pred EEEEeCCCCCH-HHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccc
Confidence 99999998743 33333221 1111221211222222222211 1111110
Q ss_pred -------------------------HHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHc-------------------
Q 011079 345 -------------------------VHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITEL------------------- 380 (494)
Q Consensus 345 -------------------------~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~------------------- 380 (494)
...+...+.....-++|+|+-+++.|+..+..+...
T Consensus 342 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~ 421 (1041)
T COG4581 342 TDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHA 421 (1041)
T ss_pred cCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHH
Confidence 011222333334458999999999999988776631
Q ss_pred ---------C-------------CcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEE----EcC-
Q 011079 381 ---------G-------------YSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVI----NFD- 433 (494)
Q Consensus 381 ---------~-------------~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI----~~~- 433 (494)
+ -.+..+|++|-+..+..+.+.|..|-++||+||..++.|+|.|.-++|+ .++
T Consensus 422 i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG 501 (1041)
T COG4581 422 IGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDG 501 (1041)
T ss_pred HhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecC
Confidence 1 1255889999999999999999999999999999999999999877766 122
Q ss_pred ---CCCCHHHHHHHhccccCCCCc--ceEEEEeccc
Q 011079 434 ---FPKNSETYLHRVGRSGRFGHL--GLAVNLITYE 464 (494)
Q Consensus 434 ---~p~s~~~~~Qr~GRagR~g~~--g~~~~l~~~~ 464 (494)
-..+...|.|+.|||||.|.. |.+++...+.
T Consensus 502 ~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 502 NGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred CceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 144789999999999998864 8887775543
No 99
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.6e-28 Score=254.73 Aligned_cols=148 Identities=16% Similarity=0.247 Sum_probs=129.8
Q ss_pred cccCCCHHHHHHHH-----HCCCCCC---cHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEE
Q 011079 123 EDYFLKRELLMGIF-----EKGFERP---SPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVIL 194 (494)
Q Consensus 123 ~~~~l~~~l~~~l~-----~~~~~~~---~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil 194 (494)
+.+.+.+++.+.+. ..||..| +|+|.++++.+..++++++.++||+|||++|++|++..+.... .++||
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~---~v~IV 141 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK---PVHLV 141 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC---CeEEE
Confidence 45678888888887 5789887 9999999999999999999999999999999999998776432 48999
Q ss_pred cCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHH-HHhHhcCCcccc-------ccceE
Q 011079 195 VPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRI-LDLSKKGVCILK-------DCSML 266 (494)
Q Consensus 195 ~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~~~~l~-------~~~~i 266 (494)
+|+++||.|..+++..+...+++++++++|+....++...+ .++|+|+||++| +++++.....++ .+.++
T Consensus 142 TpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~ 219 (970)
T PRK12899 142 TVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFA 219 (970)
T ss_pred eCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEE
Confidence 99999999999999999999999999999999988876554 589999999999 998887645444 45899
Q ss_pred Eeccccccc
Q 011079 267 VMDEADKLL 275 (494)
Q Consensus 267 ViDEah~~~ 275 (494)
||||||.|+
T Consensus 220 IIDEADsmL 228 (970)
T PRK12899 220 IIDEVDSIL 228 (970)
T ss_pred EEechhhhh
Confidence 999999876
No 100
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.2e-28 Score=256.12 Aligned_cols=314 Identities=19% Similarity=0.246 Sum_probs=236.6
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHH-HhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEE
Q 011079 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPAL-EKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVM 220 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l-~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~ 220 (494)
.|+++|.-.--.+..|+ |+.+.||+|||+++.+|++ ..+. + . .+-|++|+..||.|.++++..+...+|++++
T Consensus 81 ~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~-G-~--~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~ 154 (830)
T PRK12904 81 RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT-G-K--GVHVVTVNDYLAKRDAEWMGPLYEFLGLSVG 154 (830)
T ss_pred CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc-C-C--CEEEEecCHHHHHHHHHHHHHHHhhcCCeEE
Confidence 68888987776666664 9999999999999999996 5543 2 2 4679999999999999999999999999999
Q ss_pred EEECCCChHHHHHHhcCCCeEEEEchHHH-HHhHhcCC------ccccccceEEecccccccCC----------------
Q 011079 221 VTTGGTSLKDDIMRLYQPVHLLVGTPGRI-LDLSKKGV------CILKDCSMLVMDEADKLLSP---------------- 277 (494)
Q Consensus 221 ~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~~------~~l~~~~~iViDEah~~~~~---------------- 277 (494)
++.|+.+..+....+ .++|+|+|++.| +++++... ..+..+.++||||||.|+=+
T Consensus 155 ~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~ 232 (830)
T PRK12904 155 VILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSS 232 (830)
T ss_pred EEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCCCccc
Confidence 999998877665553 489999999999 88777543 23678999999999987510
Q ss_pred CcHHHHHHHHHHCCC-----------------------------------------------------------------
Q 011079 278 EFQPSVEQLIRFLPA----------------------------------------------------------------- 292 (494)
Q Consensus 278 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 292 (494)
.+...+..++..+..
T Consensus 233 ~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg 312 (830)
T PRK12904 233 ELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVKDG 312 (830)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECC
Confidence 011111111111100
Q ss_pred ----------------------------------------------------CCcEEEEEeecCcchHHHHHhhcCCCeE
Q 011079 293 ----------------------------------------------------NRQILMFSATFPVTVKDFKDKYLQKPYV 320 (494)
Q Consensus 293 ----------------------------------------------------~~~~i~~SATl~~~~~~~~~~~~~~~~~ 320 (494)
-.++.+||+|...+..++...|--+ +
T Consensus 313 ~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~--v 390 (830)
T PRK12904 313 EVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLD--V 390 (830)
T ss_pred EEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCC--E
Confidence 0145667777655444444444322 2
Q ss_pred EEecccccccce-eEEEEeehhhhHHHHHHHHHHh--cCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHH
Q 011079 321 INLMDELTLKGI-TQYYAFVEERQKVHCLNTLFSK--LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRN 397 (494)
Q Consensus 321 ~~~~~~~~~~~~-~~~~~~~~~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~ 397 (494)
+.++...+.... .....+.....|...+...+.. ....++||||++++.++.+++.|.+.++.+..+|+. +.+|+
T Consensus 391 v~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eRE 468 (830)
T PRK12904 391 VVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHERE 468 (830)
T ss_pred EEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHH
Confidence 223222111111 1123344566788888887755 456799999999999999999999999999999996 78899
Q ss_pred HHHHHhhcCCccEEEEcCcccccCCCCCC--------------------------------------CEEEEcCCCCCHH
Q 011079 398 RVFHDFRNGACRNLVCTDLFTRGIDIQAV--------------------------------------NVVINFDFPKNSE 439 (494)
Q Consensus 398 ~i~~~f~~g~~~vlvaT~~~~~Gidi~~v--------------------------------------~~VI~~~~p~s~~ 439 (494)
..+..|..+...|+||||+|+||+||+-- =|||-...+.|..
T Consensus 469 a~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrR 548 (830)
T PRK12904 469 AEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRR 548 (830)
T ss_pred HHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHH
Confidence 99999999999999999999999999753 2788888899999
Q ss_pred HHHHHhccccCCCCcceEEEEecccchH
Q 011079 440 TYLHRVGRSGRFGHLGLAVNLITYEDRF 467 (494)
Q Consensus 440 ~~~Qr~GRagR~g~~g~~~~l~~~~~~~ 467 (494)
--.|-.|||||.|.||.+-.|++-+|..
T Consensus 549 id~QlrGRagRQGdpGss~f~lSleD~l 576 (830)
T PRK12904 549 IDNQLRGRSGRQGDPGSSRFYLSLEDDL 576 (830)
T ss_pred HHHHhhcccccCCCCCceeEEEEcCcHH
Confidence 9999999999999999999999966544
No 101
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=5.1e-28 Score=246.29 Aligned_cols=288 Identities=19% Similarity=0.226 Sum_probs=191.1
Q ss_pred EEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHH---HHH-hc
Q 011079 161 LARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDD---IMR-LY 236 (494)
Q Consensus 161 ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~-~~ 236 (494)
++.|+||||||.+|+..+...+.. +.++||++|+++|+.|+.+.+++.. +..+..++++....+. +.. ..
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~---g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~~~~~ 74 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL---GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWRKVKN 74 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHHHHHc
Confidence 478999999999987766555543 2379999999999999998887653 4567788887665433 222 23
Q ss_pred CCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCC-----c-HHHHHHHHHHCCCCCcEEEEEeecCcchHHH
Q 011079 237 QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE-----F-QPSVEQLIRFLPANRQILMFSATFPVTVKDF 310 (494)
Q Consensus 237 ~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~-----~-~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~ 310 (494)
...+|+|+|+..+. ..+.++++|||||+|...... | ...+..+ +....+.++|++|||++ ++.+
T Consensus 75 g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~-ra~~~~~~vil~SATPs--les~ 144 (505)
T TIGR00595 75 GEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVY-RAKKFNCPVVLGSATPS--LESY 144 (505)
T ss_pred CCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHH-HHHhcCCCEEEEeCCCC--HHHH
Confidence 45799999998763 247889999999999864221 1 1122222 33335788999999965 3333
Q ss_pred HHhhcCCCeEEEeccccc---ccceeEEEEeehhh----hHHHHHHHHHHhc-CCCcEEEEecChhH-------------
Q 011079 311 KDKYLQKPYVINLMDELT---LKGITQYYAFVEER----QKVHCLNTLFSKL-QINQSIIFCNSVNR------------- 369 (494)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~----~k~~~l~~ll~~~-~~~~~lVF~~~~~~------------- 369 (494)
.....+....+.+..... .+.+. ...+.... ....++..+.+.. .++++|||+|++..
T Consensus 145 ~~~~~g~~~~~~l~~r~~~~~~p~v~-vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~ 223 (505)
T TIGR00595 145 HNAKQKAYRLLVLTRRVSGRKPPEVK-LIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYIL 223 (505)
T ss_pred HHHhcCCeEEeechhhhcCCCCCeEE-EEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCcc
Confidence 322222222233322111 11111 11111110 0112233333333 34589999766432
Q ss_pred -----------------------------------------------HHHHHHHHHHc--CCcEEEEccCCCHHHH--HH
Q 011079 370 -----------------------------------------------VELLAKKITEL--GYSCFYIHAKMLQDHR--NR 398 (494)
Q Consensus 370 -----------------------------------------------~~~l~~~L~~~--~~~~~~~~~~~~~~~r--~~ 398 (494)
++.+.+.|.+. +.++..+|++++...+ +.
T Consensus 224 ~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~ 303 (505)
T TIGR00595 224 CCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEA 303 (505)
T ss_pred CCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHH
Confidence 57777888776 6789999999887665 89
Q ss_pred HHHHhhcCCccEEEEcCcccccCCCCCCCEEE--EcCCCC----------CHHHHHHHhccccCCCCcceEEEE-ecccc
Q 011079 399 VFHDFRNGACRNLVCTDLFTRGIDIQAVNVVI--NFDFPK----------NSETYLHRVGRSGRFGHLGLAVNL-ITYED 465 (494)
Q Consensus 399 i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI--~~~~p~----------s~~~~~Qr~GRagR~g~~g~~~~l-~~~~~ 465 (494)
+++.|++|+.+|||+|+++++|+|+|+|++|+ ++|... ....|.|++||+||.+..|.+++. +++++
T Consensus 304 ~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~ 383 (505)
T TIGR00595 304 LLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNH 383 (505)
T ss_pred HHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCC
Confidence 99999999999999999999999999999885 555322 245789999999999999998854 34443
No 102
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.3e-28 Score=254.81 Aligned_cols=315 Identities=18% Similarity=0.220 Sum_probs=229.4
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEE
Q 011079 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~ 221 (494)
.|+++|.-+--.+..|+ |+.+.||+|||+++.+|++.....+. .|-|++|+.-||.+-++++..+...+|+++++
T Consensus 80 ~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~---~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~ 154 (796)
T PRK12906 80 RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGK---GVHVVTVNEYLSSRDATEMGELYRWLGLTVGL 154 (796)
T ss_pred CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCC---CeEEEeccHHHHHhhHHHHHHHHHhcCCeEEE
Confidence 78899988777776666 99999999999999888887766544 68999999999999999999999999999999
Q ss_pred EECCCChHHHHHHhcCCCeEEEEchHHHH-HhHhcC------CccccccceEEecccccccCC-------------C---
Q 011079 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRIL-DLSKKG------VCILKDCSMLVMDEADKLLSP-------------E--- 278 (494)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~-~~~~~~------~~~l~~~~~iViDEah~~~~~-------------~--- 278 (494)
+.++....+.... -.++|+|+|...|- +.++.. ......+.+.|+||+|.++=+ .
T Consensus 155 i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~~~~~ 232 (796)
T PRK12906 155 NLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATD 232 (796)
T ss_pred eCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCCCcchH
Confidence 9887665544333 36799999987652 222221 122456889999999986510 0
Q ss_pred cHHHHHHHHHHCCC------------------------------------------------------------------
Q 011079 279 FQPSVEQLIRFLPA------------------------------------------------------------------ 292 (494)
Q Consensus 279 ~~~~~~~~~~~~~~------------------------------------------------------------------ 292 (494)
+...+..++..+..
T Consensus 233 ~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~l~~ 312 (796)
T PRK12906 233 LYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYIML 312 (796)
T ss_pred HHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHHHHHh
Confidence 00011111111000
Q ss_pred --------------------------------------------------------------CCcEEEEEeecCcchHHH
Q 011079 293 --------------------------------------------------------------NRQILMFSATFPVTVKDF 310 (494)
Q Consensus 293 --------------------------------------------------------------~~~~i~~SATl~~~~~~~ 310 (494)
-.++.+||+|...+..++
T Consensus 313 ~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef 392 (796)
T PRK12906 313 KDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEF 392 (796)
T ss_pred cCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHH
Confidence 014455666654444444
Q ss_pred HHhhcCCCeEEEeccccccc-ceeEEEEeehhhhHHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHcCCcEEEE
Q 011079 311 KDKYLQKPYVINLMDELTLK-GITQYYAFVEERQKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYI 387 (494)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~ 387 (494)
...|- -+ ++.++...+.. .-.....+.+...|...+...+... ...++||||++++.++.+++.|.+.++.+..+
T Consensus 393 ~~iY~-l~-vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~L 470 (796)
T PRK12906 393 REIYN-ME-VITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVL 470 (796)
T ss_pred HHHhC-CC-EEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEe
Confidence 33332 22 22233221111 0111223345566777777777443 66799999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCC---CCC-----EEEEcCCCCCHHHHHHHhccccCCCCcceEEE
Q 011079 388 HAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQ---AVN-----VVINFDFPKNSETYLHRVGRSGRFGHLGLAVN 459 (494)
Q Consensus 388 ~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~---~v~-----~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~ 459 (494)
|+.+...++..+...+++|. |+|||++|+||+||+ +|. +||+++.|.|...|.|++||+||.|.+|.+..
T Consensus 471 na~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~ 548 (796)
T PRK12906 471 NAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 548 (796)
T ss_pred cCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEE
Confidence 99999888888888888777 999999999999995 899 99999999999999999999999999999999
Q ss_pred EecccchH
Q 011079 460 LITYEDRF 467 (494)
Q Consensus 460 l~~~~~~~ 467 (494)
|++.+|..
T Consensus 549 ~~sleD~l 556 (796)
T PRK12906 549 YLSLEDDL 556 (796)
T ss_pred EEeccchH
Confidence 99977544
No 103
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=1.8e-28 Score=254.12 Aligned_cols=327 Identities=21% Similarity=0.311 Sum_probs=245.0
Q ss_pred CCCCCcHHHHHHHHHHhcCC-cEEEEccCCCchhHHhHHHHHHhhhcCC--------CceEEEEEcCcHHHHHHHHHHHH
Q 011079 139 GFERPSPIQEESIPIALTGS-DILARAKNGTGKTAAFCIPALEKIDQDN--------NVIQVVILVPTRELALQTSQVCK 209 (494)
Q Consensus 139 ~~~~~~~~Q~~~i~~~~~~~-~~ii~~~TGsGKT~~~~~~~l~~l~~~~--------~~~~~lil~P~~~la~q~~~~~~ 209 (494)
|...++++|..+.+.++.+. ++++|||||+|||..+++-+++.+..+. ...+++|++|..+|+..+...+.
T Consensus 306 g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfS 385 (1674)
T KOG0951|consen 306 GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFS 385 (1674)
T ss_pred cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHH
Confidence 45569999999999999885 5999999999999999999999886432 22478999999999999999888
Q ss_pred HHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcC--CccccccceEEecccccccCCCcHHHHHHHH
Q 011079 210 ELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG--VCILKDCSMLVMDEADKLLSPEFQPSVEQLI 287 (494)
Q Consensus 210 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~--~~~l~~~~~iViDEah~~~~~~~~~~~~~~~ 287 (494)
+....+|+.|..++|+.....+. ...+.|+||||++..-..+++ ....+-++++|+||.|.+ .++.++.++.+.
T Consensus 386 kRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLL-hDdRGpvLESIV 461 (1674)
T KOG0951|consen 386 KRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLL-HDDRGPVLESIV 461 (1674)
T ss_pred hhccccCcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhc-ccccchHHHHHH
Confidence 88889999999999998765332 256899999999986655542 233456899999999965 445677777665
Q ss_pred HHC-------CCCCcEEEEEeecCcchHHHHHhhcC-C-CeEEEecccccccceeEEEEeehhhh---H-----HHHHHH
Q 011079 288 RFL-------PANRQILMFSATFPVTVKDFKDKYLQ-K-PYVINLMDELTLKGITQYYAFVEERQ---K-----VHCLNT 350 (494)
Q Consensus 288 ~~~-------~~~~~~i~~SATl~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~---k-----~~~l~~ 350 (494)
.+. ...++++++|||+|.- .+. ..|+. + +.+.....++.+..+.+.+.-+.++. + .....+
T Consensus 462 aRt~r~ses~~e~~RlVGLSATLPNy-~DV-~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeK 539 (1674)
T KOG0951|consen 462 ARTFRRSESTEEGSRLVGLSATLPNY-EDV-ASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEK 539 (1674)
T ss_pred HHHHHHhhhcccCceeeeecccCCch-hhh-HHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHH
Confidence 433 3468899999999843 222 22222 1 23333444455555555555443332 1 134455
Q ss_pred HHHhcCCCcEEEEecChhHHHHHHHHHHH-------------------------------------cCCcEEEEccCCCH
Q 011079 351 LFSKLQINQSIIFCNSVNRVELLAKKITE-------------------------------------LGYSCFYIHAKMLQ 393 (494)
Q Consensus 351 ll~~~~~~~~lVF~~~~~~~~~l~~~L~~-------------------------------------~~~~~~~~~~~~~~ 393 (494)
++.+...+++|||+.+++++.+.|+.++. +.+..+.+|++|+.
T Consensus 540 Vm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R 619 (1674)
T KOG0951|consen 540 VLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNR 619 (1674)
T ss_pred HHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCc
Confidence 67777889999999999999988888773 24568899999999
Q ss_pred HHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEE----EcCC------CCCHHHHHHHhccccCCCC--cceEEEEe
Q 011079 394 DHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVI----NFDF------PKNSETYLHRVGRSGRFGH--LGLAVNLI 461 (494)
Q Consensus 394 ~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI----~~~~------p~s~~~~~Qr~GRagR~g~--~g~~~~l~ 461 (494)
.+|..+.+.|..|.++|+|+|-.++.|+++|+-+++| -|++ +.++.+..||.|||||.+- .|..++.-
T Consensus 620 ~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit 699 (1674)
T KOG0951|consen 620 KDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIIT 699 (1674)
T ss_pred chHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeecc
Confidence 9999999999999999999999999999999877777 2333 4588999999999999643 35455554
Q ss_pred cccchHHHHH
Q 011079 462 TYEDRFNLYR 471 (494)
Q Consensus 462 ~~~~~~~~~~ 471 (494)
+..+...+..
T Consensus 700 ~~se~qyyls 709 (1674)
T KOG0951|consen 700 DHSELQYYLS 709 (1674)
T ss_pred CchHhhhhHH
Confidence 5554444443
No 104
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.96 E-value=3.3e-26 Score=208.55 Aligned_cols=304 Identities=18% Similarity=0.213 Sum_probs=207.6
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011079 142 RPSPIQEESIPIAL----TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI 217 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~----~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (494)
++++.|+.+-+.+. ...+.+++|-||+|||-. +...++..... |.++.+.+|+...+..++..++.... ++
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~--G~~vciASPRvDVclEl~~Rlk~aF~--~~ 171 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ--GGRVCIASPRVDVCLELYPRLKQAFS--NC 171 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhc--CCeEEEecCcccchHHHHHHHHHhhc--cC
Confidence 68999988776655 557899999999999986 33444444433 23889999999988777776666443 46
Q ss_pred EEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEE
Q 011079 218 QVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQIL 297 (494)
Q Consensus 218 ~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i 297 (494)
.+..++|++... -...++|+|...|++.. +.|+++||||+|.+--..-......+-......--.|
T Consensus 172 ~I~~Lyg~S~~~-------fr~plvVaTtHQLlrFk-------~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~I 237 (441)
T COG4098 172 DIDLLYGDSDSY-------FRAPLVVATTHQLLRFK-------QAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATI 237 (441)
T ss_pred CeeeEecCCchh-------ccccEEEEehHHHHHHH-------hhccEEEEeccccccccCCHHHHHHHHHhhcccCceE
Confidence 677888876643 23689999999998743 4589999999997533222223333444455566789
Q ss_pred EEEeecCcchHHHHHhhcCCCeEEEecccccccce-eEEEEeehhh-h-----HH-HHHHHHHHhc--CCCcEEEEecCh
Q 011079 298 MFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGI-TQYYAFVEER-Q-----KV-HCLNTLFSKL--QINQSIIFCNSV 367 (494)
Q Consensus 298 ~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-----k~-~~l~~ll~~~--~~~~~lVF~~~~ 367 (494)
.+|||.+.+....... ++-..+.++.......+ ...+.+...- . |+ ..|...++.. ...++|||+++.
T Consensus 238 ylTATp~k~l~r~~~~--g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I 315 (441)
T COG4098 238 YLTATPTKKLERKILK--GNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEI 315 (441)
T ss_pred EEecCChHHHHHHhhh--CCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecch
Confidence 9999988555443332 22223444433222111 1112222211 1 11 1344555444 346999999999
Q ss_pred hHHHHHHHHHHHc-C-CcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCC--CCCHHHHHH
Q 011079 368 NRVELLAKKITEL-G-YSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF--PKNSETYLH 443 (494)
Q Consensus 368 ~~~~~l~~~L~~~-~-~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~--p~s~~~~~Q 443 (494)
+..++++..|.+. . ..+..+|+. ...|.+..++|++|+.++||+|.+++||+++|+|+++|.-.- -.+.+..+|
T Consensus 316 ~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQ 393 (441)
T COG4098 316 ETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQ 393 (441)
T ss_pred HHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHH
Confidence 9999999999543 3 456788987 568899999999999999999999999999999998664332 268889999
Q ss_pred HhccccCC--CCcceEEEEecccchHH
Q 011079 444 RVGRSGRF--GHLGLAVNLITYEDRFN 468 (494)
Q Consensus 444 r~GRagR~--g~~g~~~~l~~~~~~~~ 468 (494)
.+||+||. -..|.++.|..-....+
T Consensus 394 IaGRvGRs~~~PtGdv~FFH~G~skaM 420 (441)
T COG4098 394 IAGRVGRSLERPTGDVLFFHYGKSKAM 420 (441)
T ss_pred HhhhccCCCcCCCCcEEEEeccchHHH
Confidence 99999994 23477766666444433
No 105
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.96 E-value=8.5e-27 Score=254.47 Aligned_cols=316 Identities=16% Similarity=0.205 Sum_probs=200.9
Q ss_pred CCcHHHHHHHHHHh----cC-CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 011079 142 RPSPIQEESIPIAL----TG-SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLN 216 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~----~~-~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~ 216 (494)
.++++|.+||..+. .+ +.++++++||||||.+++. ++..+.......++|+|+|+.+|+.|+.+.+..+.....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 58999999998776 23 5699999999999987443 444444444445999999999999999998887643222
Q ss_pred cEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcC-----CccccccceEEecccccccCC--------------
Q 011079 217 IQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG-----VCILKDCSMLVMDEADKLLSP-------------- 277 (494)
Q Consensus 217 ~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~-----~~~l~~~~~iViDEah~~~~~-------------- 277 (494)
..+..+++.....+ ........|+|+|..+|...+... ...+..+++||+||||+....
T Consensus 492 ~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~ 569 (1123)
T PRK11448 492 QTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQ 569 (1123)
T ss_pred cchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchh
Confidence 11111111111111 112345799999999987754321 134678999999999985310
Q ss_pred -CcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHH--------------hhcC---CCeEEEec---ccccccc-----
Q 011079 278 -EFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKD--------------KYLQ---KPYVINLM---DELTLKG----- 331 (494)
Q Consensus 278 -~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~--------------~~~~---~~~~~~~~---~~~~~~~----- 331 (494)
++...+..++..+ +...|+||||+......++. .++- .|..+... .......
T Consensus 570 ~~~~~~yr~iL~yF--dA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~ 647 (1123)
T PRK11448 570 LDYVSKYRRVLDYF--DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVE 647 (1123)
T ss_pred hhHHHHHHHHHhhc--CccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchhh
Confidence 1235677777765 34579999997533322211 1111 01111100 0000000
Q ss_pred -eeE---EE--Eeehhhh---------------HHHH-HHHHH---HhcCCCcEEEEecChhHHHHHHHHHHHc------
Q 011079 332 -ITQ---YY--AFVEERQ---------------KVHC-LNTLF---SKLQINQSIIFCNSVNRVELLAKKITEL------ 380 (494)
Q Consensus 332 -~~~---~~--~~~~~~~---------------k~~~-l~~ll---~~~~~~~~lVF~~~~~~~~~l~~~L~~~------ 380 (494)
+.. .. ...+... .... +..++ .....+++||||.+.++|+.+++.|.+.
T Consensus 648 ~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~ 727 (1123)
T PRK11448 648 VINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYG 727 (1123)
T ss_pred hcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcC
Confidence 000 00 0000000 0001 11122 2223479999999999999999888763
Q ss_pred CC---cEEEEccCCCHHHHHHHHHHhhcCCc-cEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCC--c
Q 011079 381 GY---SCFYIHAKMLQDHRNRVFHDFRNGAC-RNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGH--L 454 (494)
Q Consensus 381 ~~---~~~~~~~~~~~~~r~~i~~~f~~g~~-~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~--~ 454 (494)
++ .+..++|..+ ++..+++.|+++.. +|+|+++++.+|+|+|.+.+||++.++.|...|.|++||+.|.-. .
T Consensus 728 ~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~ 805 (1123)
T PRK11448 728 QVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCPEIG 805 (1123)
T ss_pred CcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCccCC
Confidence 22 3556888875 56789999999887 689999999999999999999999999999999999999999632 1
Q ss_pred ceEEEEeccc
Q 011079 455 GLAVNLITYE 464 (494)
Q Consensus 455 g~~~~l~~~~ 464 (494)
...+.+++.-
T Consensus 806 K~~f~I~D~v 815 (1123)
T PRK11448 806 KTHFRIFDAV 815 (1123)
T ss_pred CceEEEEehH
Confidence 3456666643
No 106
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.1e-26 Score=240.99 Aligned_cols=314 Identities=18% Similarity=0.201 Sum_probs=222.4
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEE
Q 011079 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~ 221 (494)
.++++|.-.--.+..| -|+.++||.|||+++.+|++.....+. .|.||+|+..||.+..+++..+...+|+++++
T Consensus 82 ~~ydVQliGgl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~g~---~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~ 156 (908)
T PRK13107 82 RHFDVQLLGGMVLDSN--RIAEMRTGEGKTLTATLPAYLNALTGK---GVHVITVNDYLARRDAENNRPLFEFLGLTVGI 156 (908)
T ss_pred CcCchHHhcchHhcCC--ccccccCCCCchHHHHHHHHHHHhcCC---CEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 5778886554444444 499999999999999999987765543 48999999999999999999999999999999
Q ss_pred EECCCChHHHHHHhcCCCeEEEEchHHH-HHhHhcC-Ccc-----ccccceEEecccccccCCC----------------
Q 011079 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRI-LDLSKKG-VCI-----LKDCSMLVMDEADKLLSPE---------------- 278 (494)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~-~~~-----l~~~~~iViDEah~~~~~~---------------- 278 (494)
+.++....+... .-.++|+|+|++.| +++++.. ... ...+.++|+||||.++-+.
T Consensus 157 i~~~~~~~~r~~--~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~~~~~~ 234 (908)
T PRK13107 157 NVAGLGQQEKKA--AYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSE 234 (908)
T ss_pred ecCCCCHHHHHh--cCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCCccchH
Confidence 998877643222 23689999999999 7777665 222 3678999999999865211
Q ss_pred cHHHHHHHHHHCC-------------------CC----------------------------------------------
Q 011079 279 FQPSVEQLIRFLP-------------------AN---------------------------------------------- 293 (494)
Q Consensus 279 ~~~~~~~~~~~~~-------------------~~---------------------------------------------- 293 (494)
+...+..++..+. ..
T Consensus 235 ~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i~~aL 314 (908)
T PRK13107 235 LYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHVNAAL 314 (908)
T ss_pred HHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHHHHHH
Confidence 1111111111110 00
Q ss_pred ----------------------------------------------------------------------CcEEEEEeec
Q 011079 294 ----------------------------------------------------------------------RQILMFSATF 303 (494)
Q Consensus 294 ----------------------------------------------------------------------~~~i~~SATl 303 (494)
.++-+||+|.
T Consensus 315 ~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa 394 (908)
T PRK13107 315 RAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGMTGTA 394 (908)
T ss_pred HHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcccCCC
Confidence 0233334443
Q ss_pred CcchHHHHHhhcCCCeEEEeccccc--ccceeEEEEeehhhhHHHHHHHHHHh--cCCCcEEEEecChhHHHHHHHHHHH
Q 011079 304 PVTVKDFKDKYLQKPYVINLMDELT--LKGITQYYAFVEERQKVHCLNTLFSK--LQINQSIIFCNSVNRVELLAKKITE 379 (494)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~ 379 (494)
.....+|...|--+ ++.++...+ ..... ...+.....|...+..-+.. ....++||||.+.+.++.++..|..
T Consensus 395 ~te~~Ef~~iY~l~--Vv~IPTnkp~~R~d~~-d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~ 471 (908)
T PRK13107 395 DTEAFEFQHIYGLD--TVVVPTNRPMVRKDMA-DLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVK 471 (908)
T ss_pred hHHHHHHHHHhCCC--EEECCCCCCccceeCC-CcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHH
Confidence 33333333322211 111211111 11111 11233345555555544432 2456999999999999999999999
Q ss_pred cCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCC----------------------------------
Q 011079 380 LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQA---------------------------------- 425 (494)
Q Consensus 380 ~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~---------------------------------- 425 (494)
.++.+..+|+.+++.++..+.+.|++|. |+||||+++||+||.=
T Consensus 472 ~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 549 (908)
T PRK13107 472 EKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVV 549 (908)
T ss_pred CCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999998 9999999999999972
Q ss_pred ---CCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchH
Q 011079 426 ---VNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRF 467 (494)
Q Consensus 426 ---v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~ 467 (494)
==+||-...+.|..--.|-.|||||-|.||.+-.|++-+|..
T Consensus 550 ~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L 594 (908)
T PRK13107 550 AAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSL 594 (908)
T ss_pred HcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHH
Confidence 127888888889888899999999999999999999966643
No 107
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.95 E-value=1.6e-25 Score=240.00 Aligned_cols=314 Identities=15% Similarity=0.158 Sum_probs=214.2
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEccCCCchhHHhHHHHHHhhhc-CCCceEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 011079 142 RPSPIQEESIPIAL----TGSDILARAKNGTGKTAAFCIPALEKIDQ-DNNVIQVVILVPTRELALQTSQVCKELGKHLN 216 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~----~~~~~ii~~~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~ 216 (494)
.+++||.++++.+. .+...|++.++|.|||++.+. ++.++.. .+....+|||||. .+..+|.+.+.+++. .
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIa-lL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p--~ 244 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTIS-LLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCP--V 244 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHH-HHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCC--C
Confidence 68999999999886 467799999999999998544 3444432 2333478999997 455778888888764 3
Q ss_pred cEEEEEECCCChHHHHHH---hcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCC
Q 011079 217 IQVMVTTGGTSLKDDIMR---LYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPAN 293 (494)
Q Consensus 217 ~~~~~~~g~~~~~~~~~~---~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~ 293 (494)
+.+..++|....+..... .....+|+|+|++.+...... +.--.+++||+||||++-+. .......+..+...
T Consensus 245 l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--L~k~~W~~VIvDEAHrIKN~--~Sklskalr~L~a~ 320 (1033)
T PLN03142 245 LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--LKRFSWRYIIIDEAHRIKNE--NSLLSKTMRLFSTN 320 (1033)
T ss_pred CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--hccCCCCEEEEcCccccCCH--HHHHHHHHHHhhcC
Confidence 566667776543332211 124578999999998763321 22235789999999998653 33445556666544
Q ss_pred CcEEEEEeecCc-chHHHHH------------------hh----------------------------------cCCCeE
Q 011079 294 RQILMFSATFPV-TVKDFKD------------------KY----------------------------------LQKPYV 320 (494)
Q Consensus 294 ~~~i~~SATl~~-~~~~~~~------------------~~----------------------------------~~~~~~ 320 (494)
..+++|||+-. .+.++.. .| +.....
T Consensus 321 -~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e 399 (1033)
T PLN03142 321 -YRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKE 399 (1033)
T ss_pred -cEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCcee
Confidence 45889999511 1111100 00 000000
Q ss_pred EEecccccc---------------------------------------ccee----------EEEEeehhhhHHHHHHHH
Q 011079 321 INLMDELTL---------------------------------------KGIT----------QYYAFVEERQKVHCLNTL 351 (494)
Q Consensus 321 ~~~~~~~~~---------------------------------------~~~~----------~~~~~~~~~~k~~~l~~l 351 (494)
..+....+. +.+. .....+....|+..|..+
T Consensus 400 ~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkL 479 (1033)
T PLN03142 400 TILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKL 479 (1033)
T ss_pred EEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHH
Confidence 000000000 0000 000001123456666666
Q ss_pred HHhc--CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcC---CccEEEEcCcccccCCCCCC
Q 011079 352 FSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNG---ACRNLVCTDLFTRGIDIQAV 426 (494)
Q Consensus 352 l~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g---~~~vlvaT~~~~~Gidi~~v 426 (494)
+... ...++|||+.....++.|.+.|...++.+..++|+++..+|..+++.|... ...+|++|.+++.|||+..+
T Consensus 480 L~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~A 559 (1033)
T PLN03142 480 LPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATA 559 (1033)
T ss_pred HHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhC
Confidence 6554 456999999999999999999999999999999999999999999999753 34578999999999999999
Q ss_pred CEEEEcCCCCCHHHHHHHhccccCCCCcce--EEEEeccc
Q 011079 427 NVVINFDFPKNSETYLHRVGRSGRFGHLGL--AVNLITYE 464 (494)
Q Consensus 427 ~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~--~~~l~~~~ 464 (494)
++||+||+++++....|++||+.|.|+... +|.|++.+
T Consensus 560 d~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 560 DIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred CEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 999999999999999999999999998754 56777765
No 108
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=3e-26 Score=202.54 Aligned_cols=165 Identities=34% Similarity=0.572 Sum_probs=141.9
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEE
Q 011079 144 SPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTT 223 (494)
Q Consensus 144 ~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~ 223 (494)
+|+|.++++.+..++++++.+|||+|||+++.++++..+.+. ...+++|++|+++|+.|+.+.+..+....+.++..++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 79 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLH 79 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEES
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeeccccccccccccccccccccccccccc
Confidence 689999999999999999999999999999999999988876 4458999999999999999999999888788899999
Q ss_pred CCCChH-HHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCC--CCCcEEEEE
Q 011079 224 GGTSLK-DDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLP--ANRQILMFS 300 (494)
Q Consensus 224 g~~~~~-~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~--~~~~~i~~S 300 (494)
++.... .....+...++|+|+||++|.+++......+.++++||+||+|.+....+...+..++..+. .+.+++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~S 159 (169)
T PF00270_consen 80 GGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLS 159 (169)
T ss_dssp TTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEE
T ss_pred ccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 988755 44444456799999999999998887655677799999999999988788888888888773 368999999
Q ss_pred eecCcchHH
Q 011079 301 ATFPVTVKD 309 (494)
Q Consensus 301 ATl~~~~~~ 309 (494)
||++..+++
T Consensus 160 AT~~~~~~~ 168 (169)
T PF00270_consen 160 ATLPSNVEK 168 (169)
T ss_dssp SSSTHHHHH
T ss_pred eCCChhHhh
Confidence 999855443
No 109
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.94 E-value=1.8e-25 Score=228.28 Aligned_cols=328 Identities=20% Similarity=0.252 Sum_probs=234.8
Q ss_pred HHHHHHHCCCCCCcHHHHHHH--HHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHH
Q 011079 131 LLMGIFEKGFERPSPIQEESI--PIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVC 208 (494)
Q Consensus 131 l~~~l~~~~~~~~~~~Q~~~i--~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~ 208 (494)
........|...++.+|.+++ +.++.++++|..+||+.|||+++.+-++..+....+ .++.+.|....+..-...+
T Consensus 212 ~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr--~~llilp~vsiv~Ek~~~l 289 (1008)
T KOG0950|consen 212 SHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR--NVLLILPYVSIVQEKISAL 289 (1008)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh--ceeEecceeehhHHHHhhh
Confidence 333444567889999999887 678888999999999999999999888888765443 5788889888877777778
Q ss_pred HHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcC--CccccccceEEecccccccCCCcHHHHHHH
Q 011079 209 KELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG--VCILKDCSMLVMDEADKLLSPEFQPSVEQL 286 (494)
Q Consensus 209 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~--~~~l~~~~~iViDEah~~~~~~~~~~~~~~ 286 (494)
..+....|+.+-...|...... ..+..++.|||.++-..+.... .-.+..+++||+||.|.+.+.+.+..++.+
T Consensus 290 ~~~~~~~G~~ve~y~g~~~p~~----~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~ 365 (1008)
T KOG0950|consen 290 SPFSIDLGFPVEEYAGRFPPEK----RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELL 365 (1008)
T ss_pred hhhccccCCcchhhcccCCCCC----cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHH
Confidence 8888888998888776654332 2245689999999865543321 223677899999999999998888887777
Q ss_pred HHHC-----CCCCcEEEEEeecCcchHHHHHhhcCCCeEEE------ecccccccceeEEEEeehhhhHHHHHHHH----
Q 011079 287 IRFL-----PANRQILMFSATFPVTVKDFKDKYLQKPYVIN------LMDELTLKGITQYYAFVEERQKVHCLNTL---- 351 (494)
Q Consensus 287 ~~~~-----~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~k~~~l~~l---- 351 (494)
+... ....|+|+||||++.. .....++....... +.+.. ..+.. ..+.. +...+..+
T Consensus 366 l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t~fRPv~L~E~i-k~G~~----i~~~~-r~~~lr~ia~l~ 437 (1008)
T KOG0950|consen 366 LAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTTRFRPVPLKEYI-KPGSL----IYESS-RNKVLREIANLY 437 (1008)
T ss_pred HHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhheecccCcccchhcc-CCCcc----cccch-hhHHHHHhhhhh
Confidence 6443 3346799999999742 22333332211111 00111 00100 01110 11222221
Q ss_pred ---------------HHh-cCCC-cEEEEecChhHHHHHHHHHHH-----------------------------------
Q 011079 352 ---------------FSK-LQIN-QSIIFCNSVNRVELLAKKITE----------------------------------- 379 (494)
Q Consensus 352 ---------------l~~-~~~~-~~lVF~~~~~~~~~l~~~L~~----------------------------------- 379 (494)
..+ .+.+ .+||||+++..|+.++..+..
T Consensus 438 ~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl 517 (1008)
T KOG0950|consen 438 SSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVL 517 (1008)
T ss_pred hhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHH
Confidence 111 1223 599999999999998865543
Q ss_pred ---cCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcC----CCCCHHHHHHHhccccCCC
Q 011079 380 ---LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFD----FPKNSETYLHRVGRSGRFG 452 (494)
Q Consensus 380 ---~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~----~p~s~~~~~Qr~GRagR~g 452 (494)
..+.+.++|+++..++|+.+...|++|...|++||+.+..|++.|..+++|-.- ...+..+|.|++|||||+|
T Consensus 518 ~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~g 597 (1008)
T KOG0950|consen 518 AKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTG 597 (1008)
T ss_pred heeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcc
Confidence 123578999999999999999999999999999999999999999999988432 2457889999999999987
Q ss_pred C--cceEEEEecccchHHHHHH
Q 011079 453 H--LGLAVNLITYEDRFNLYRI 472 (494)
Q Consensus 453 ~--~g~~~~l~~~~~~~~~~~l 472 (494)
- .|.+++++...+......+
T Consensus 598 idT~GdsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 598 IDTLGDSILIIKSSEKKRVREL 619 (1008)
T ss_pred cccCcceEEEeeccchhHHHHH
Confidence 5 4899999999987766643
No 110
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.92 E-value=1.8e-23 Score=222.73 Aligned_cols=318 Identities=22% Similarity=0.240 Sum_probs=210.4
Q ss_pred CcHHHHHHHHHHhcC---C-cEEEEccCCCchhHHhHHHHHHhhhc-CCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011079 143 PSPIQEESIPIALTG---S-DILARAKNGTGKTAAFCIPALEKIDQ-DNNVIQVVILVPTRELALQTSQVCKELGKHLNI 217 (494)
Q Consensus 143 ~~~~Q~~~i~~~~~~---~-~~ii~~~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (494)
.++.|..++..+... . .+++.||||+|||++.+.+++..+.. .....+++++.|++++..++.+.++......+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~ 275 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSV 275 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccccc
Confidence 488999999988854 3 68899999999999999988887776 345669999999999999999988877654433
Q ss_pred EEEEEECCCChHHHHHH---------h-----cCCCeEEEEchHHHHHhHhcC-Ccc-c--cccceEEecccccccCCCc
Q 011079 218 QVMVTTGGTSLKDDIMR---------L-----YQPVHLLVGTPGRILDLSKKG-VCI-L--KDCSMLVMDEADKLLSPEF 279 (494)
Q Consensus 218 ~~~~~~g~~~~~~~~~~---------~-----~~~~~Ilv~T~~~l~~~~~~~-~~~-l--~~~~~iViDEah~~~~~~~ 279 (494)
.....++.....-.... . ..-..+.++|+-.+....... ... + -..+.+|+||+|.+.+...
T Consensus 276 ~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~~ 355 (733)
T COG1203 276 IGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETM 355 (733)
T ss_pred ccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccch
Confidence 22212222221100000 0 011234444444443321111 111 1 2347899999998766533
Q ss_pred HHHHHHHHHHC-CCCCcEEEEEeecCcchHHHHHhhcCCCeEEEeccccc----ccceeEEEEeehhhhH--HHHHHHHH
Q 011079 280 QPSVEQLIRFL-PANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELT----LKGITQYYAFVEERQK--VHCLNTLF 352 (494)
Q Consensus 280 ~~~~~~~~~~~-~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~k--~~~l~~ll 352 (494)
...+..++..+ .-+..+|+||||+|+...+.....+.....+....... ...+.... ....... ......+.
T Consensus 356 ~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~ 434 (733)
T COG1203 356 LAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKE-RVDVEDGPQEELIELIS 434 (733)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceecccccccccccccccccc-chhhhhhhhHhhhhcch
Confidence 44444444333 34678999999999999888888776654443321100 00110000 0000000 01111222
Q ss_pred Hh-cCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhh----cCCccEEEEcCcccccCCCCCCC
Q 011079 353 SK-LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFR----NGACRNLVCTDLFTRGIDIQAVN 427 (494)
Q Consensus 353 ~~-~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~----~g~~~vlvaT~~~~~Gidi~~v~ 427 (494)
.. ....+++|.|||+..|.++++.|+..+..+..+||.+...+|.+.++... .+...|+|||.+.+.|+|++ .+
T Consensus 435 ~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd 513 (733)
T COG1203 435 EEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FD 513 (733)
T ss_pred hhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cC
Confidence 22 24569999999999999999999998778999999999999988877544 57788999999999999995 77
Q ss_pred EEEEcCCCCCHHHHHHHhccccCCC--CcceEEEEeccc
Q 011079 428 VVINFDFPKNSETYLHRVGRSGRFG--HLGLAVNLITYE 464 (494)
Q Consensus 428 ~VI~~~~p~s~~~~~Qr~GRagR~g--~~g~~~~l~~~~ 464 (494)
.+|- -+..+.+.+||+||++|-| ..|..+.+....
T Consensus 514 ~mIT--e~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 514 VLIT--ELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred eeee--cCCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 7763 2456789999999999998 567777776644
No 111
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.91 E-value=9.9e-23 Score=203.07 Aligned_cols=324 Identities=19% Similarity=0.233 Sum_probs=230.2
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEccCCCchhHHhHHHHHHhhhc-CCCceEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 011079 142 RPSPIQEESIPIAL----TGSDILARAKNGTGKTAAFCIPALEKIDQ-DNNVIQVVILVPTRELALQTSQVCKELGKHLN 216 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~----~~~~~ii~~~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~ 216 (494)
.+++||.+.++++. .|-++|+..++|-|||++ .++++.++.. .+-....||+||...|. .|.+.++++.. +
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~~~GPfLVi~P~StL~-NW~~Ef~rf~P--~ 242 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKGIPGPFLVIAPKSTLD-NWMNEFKRFTP--S 242 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhcCCCCCeEEEeeHhhHH-HHHHHHHHhCC--C
Confidence 68999999999886 355799999999999998 5556666554 33234689999998874 45677777754 5
Q ss_pred cEEEEEECCCChHHHHHH---hcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCC
Q 011079 217 IQVMVTTGGTSLKDDIMR---LYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPAN 293 (494)
Q Consensus 217 ~~~~~~~g~~~~~~~~~~---~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~ 293 (494)
+++.+++|+...+....+ .....+|+|+|+++.++- +..+.--.++++||||||++-+. ...+.++++.+...
T Consensus 243 l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~f~~~ 318 (971)
T KOG0385|consen 243 LNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNE--KSKLSKILREFKTD 318 (971)
T ss_pred cceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcch--hhHHHHHHHHhccc
Confidence 778889988765544322 123679999999998763 22222335789999999998653 34455677777555
Q ss_pred CcEEEEEeecC-cchH----------------------------------------------------------------
Q 011079 294 RQILMFSATFP-VTVK---------------------------------------------------------------- 308 (494)
Q Consensus 294 ~~~i~~SATl~-~~~~---------------------------------------------------------------- 308 (494)
.+ +++|+|+- ..+.
T Consensus 319 nr-LLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE 397 (971)
T KOG0385|consen 319 NR-LLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKE 397 (971)
T ss_pred ce-eEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcce
Confidence 54 77788830 0000
Q ss_pred -----------------------------------------HHHHhhcCCCeEEEecccccccceeEEEEeehhhhHHHH
Q 011079 309 -----------------------------------------DFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHC 347 (494)
Q Consensus 309 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 347 (494)
-..++..++|+.+...+. .+........+....|+..
T Consensus 398 ~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~eP--g~pyttdehLv~nSGKm~v 475 (971)
T KOG0385|consen 398 LIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEP--GPPYTTDEHLVTNSGKMLV 475 (971)
T ss_pred eeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCC--CCCCCcchHHHhcCcceeh
Confidence 001111122222211100 0111112223334557777
Q ss_pred HHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcC---CccEEEEcCcccccCC
Q 011079 348 LNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNG---ACRNLVCTDLFTRGID 422 (494)
Q Consensus 348 l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g---~~~vlvaT~~~~~Gid 422 (494)
|..++..+ .+.++|||..-....+.|-+++.-+++....+.|.++.++|...++.|... ..-.|++|.+.+-|||
T Consensus 476 LDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGIN 555 (971)
T KOG0385|consen 476 LDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGIN 555 (971)
T ss_pred HHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccc
Confidence 77777665 456999999999999999999999999999999999999999999999854 3445899999999999
Q ss_pred CCCCCEEEEcCCCCCHHHHHHHhccccCCCCc--ceEEEEecccc--hHHHHHHHHHh
Q 011079 423 IQAVNVVINFDFPKNSETYLHRVGRSGRFGHL--GLAVNLITYED--RFNLYRIEQEL 476 (494)
Q Consensus 423 i~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~--g~~~~l~~~~~--~~~~~~l~~~~ 476 (494)
+..+++||.||..+++..-+|..-||+|.|+. =.+|.|++.+. ...+.+-+..+
T Consensus 556 L~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL 613 (971)
T KOG0385|consen 556 LTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKL 613 (971)
T ss_pred cccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999985 45788998763 44444444444
No 112
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=7.5e-23 Score=213.38 Aligned_cols=128 Identities=20% Similarity=0.242 Sum_probs=113.5
Q ss_pred eehhhhHHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcC
Q 011079 338 FVEERQKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD 415 (494)
Q Consensus 338 ~~~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~ 415 (494)
+.....|...+...+... ...++||||+|++.++.|++.|.+.++.+..+|+ .+.+|+..+..|..+...|+||||
T Consensus 577 y~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATN 654 (1025)
T PRK12900 577 YKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATN 654 (1025)
T ss_pred ecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEecc
Confidence 344556888888877544 5679999999999999999999999999999997 588999999999999999999999
Q ss_pred cccccCCCC---CCC-----EEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchH
Q 011079 416 LFTRGIDIQ---AVN-----VVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRF 467 (494)
Q Consensus 416 ~~~~Gidi~---~v~-----~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~ 467 (494)
+|+||+||+ .|. +||++..|.|...|.|++||+||.|.+|.+..|++.+|..
T Consensus 655 MAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 655 MAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred CcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 999999999 454 4589999999999999999999999999999999987654
No 113
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.90 E-value=2.7e-21 Score=210.46 Aligned_cols=329 Identities=18% Similarity=0.191 Sum_probs=207.8
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHH----HHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHH
Q 011079 128 KRELLMGIFEKGFERPSPIQEESIP----IALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQ 203 (494)
Q Consensus 128 ~~~l~~~l~~~~~~~~~~~Q~~~i~----~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q 203 (494)
++.+.+.+...||. +++.|.+.+. .+..++++++.||||+|||++|++|++.... .+.+++|.+||++|..|
T Consensus 232 ~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---~~~~vvi~t~t~~Lq~Q 307 (850)
T TIGR01407 232 SSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---TEKPVVISTNTKVLQSQ 307 (850)
T ss_pred cHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---CCCeEEEEeCcHHHHHH
Confidence 34667777778885 7899998666 5556788999999999999999999988766 23389999999999999
Q ss_pred HHH-HHHHHhccCC--cEEEEEECCCChH--------------------------------------------------H
Q 011079 204 TSQ-VCKELGKHLN--IQVMVTTGGTSLK--------------------------------------------------D 230 (494)
Q Consensus 204 ~~~-~~~~~~~~~~--~~~~~~~g~~~~~--------------------------------------------------~ 230 (494)
+.. .+..+.+.++ +++..+.|...+- +
T Consensus 308 l~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~~~~ 387 (850)
T TIGR01407 308 LLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKMFFA 387 (850)
T ss_pred HHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchhhHH
Confidence 854 6666655444 5566555554320 0
Q ss_pred H---------------------HHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccC-------CCc---
Q 011079 231 D---------------------IMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS-------PEF--- 279 (494)
Q Consensus 231 ~---------------------~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~-------~~~--- 279 (494)
+ .+.....++|+|+++..|+..+......+....++||||||.+.+ ..+
T Consensus 388 ~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~~~ls~~ 467 (850)
T TIGR01407 388 QVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQEELDYA 467 (850)
T ss_pred HhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhcceeCHH
Confidence 0 000112578999999988776544434467789999999999742 000
Q ss_pred --HHH-------------------------------------------------------------HHH---HHHH----
Q 011079 280 --QPS-------------------------------------------------------------VEQ---LIRF---- 289 (494)
Q Consensus 280 --~~~-------------------------------------------------------------~~~---~~~~---- 289 (494)
... ... .+..
T Consensus 468 ~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 547 (850)
T TIGR01407 468 DIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLALKDD 547 (850)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 000 000 0000
Q ss_pred -------C-------------------------------------CCCCcEEEEEeecCcc-hHHHHHhhcCCC--eEEE
Q 011079 290 -------L-------------------------------------PANRQILMFSATFPVT-VKDFKDKYLQKP--YVIN 322 (494)
Q Consensus 290 -------~-------------------------------------~~~~~~i~~SATl~~~-~~~~~~~~~~~~--~~~~ 322 (494)
+ +....+|++|||++.. -.++....++-+ ....
T Consensus 548 ~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~ 627 (850)
T TIGR01407 548 FKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDVHFNT 627 (850)
T ss_pred HHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCccccce
Confidence 0 1124688999999743 234444444422 1112
Q ss_pred ec-ccccccceeEEEEe--e------hhhhHH----HHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHc----CCcEE
Q 011079 323 LM-DELTLKGITQYYAF--V------EERQKV----HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITEL----GYSCF 385 (494)
Q Consensus 323 ~~-~~~~~~~~~~~~~~--~------~~~~k~----~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~ 385 (494)
+. ..+....-...+.. . ....-. ..+..++. ..++++|||+++.+..+.++..|... ++.+
T Consensus 628 ~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~-~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~- 705 (850)
T TIGR01407 628 IEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITA-ITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEV- 705 (850)
T ss_pred ecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH-hcCCCEEEEeCCHHHHHHHHHHHhhhccccCceE-
Confidence 21 11111111111110 0 111111 22223332 25589999999999999999999752 3332
Q ss_pred EEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCC--EEEEcCCCCC--------------------------
Q 011079 386 YIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVN--VVINFDFPKN-------------------------- 437 (494)
Q Consensus 386 ~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~--~VI~~~~p~s-------------------------- 437 (494)
+..+.. ..|..+++.|++++..||++|+.+.+|||+++.. .||...+|..
T Consensus 706 -l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~ 783 (850)
T TIGR01407 706 -LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYV 783 (850)
T ss_pred -EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhh
Confidence 223322 4788899999999999999999999999999966 4666666541
Q ss_pred ----HHHHHHHhccccCCCCcceEEEEeccc
Q 011079 438 ----SETYLHRVGRSGRFGHLGLAVNLITYE 464 (494)
Q Consensus 438 ----~~~~~Qr~GRagR~g~~g~~~~l~~~~ 464 (494)
...+.|.+||.-|.....-++.+++..
T Consensus 784 lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 784 LPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred HHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 223479999999986654466666644
No 114
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=2.1e-21 Score=197.31 Aligned_cols=314 Identities=18% Similarity=0.163 Sum_probs=216.9
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEE
Q 011079 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~ 221 (494)
.|+++|.-+.-.++.|+ |+.+.||+|||+++.+|++.....+. .|.|++|+.-||.+-++++..+...+|+++++
T Consensus 78 r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~---~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~ 152 (764)
T PRK12326 78 RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGR---RVHVITVNDYLARRDAEWMGPLYEALGLTVGW 152 (764)
T ss_pred CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCC---CeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 78999999998888775 88999999999999988887665443 68999999999999999999999999999999
Q ss_pred EECCCChHHHHHHhcCCCeEEEEchHHHH-HhHhc------CCccccccceEEecccccccCC---------------Cc
Q 011079 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRIL-DLSKK------GVCILKDCSMLVMDEADKLLSP---------------EF 279 (494)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~-~~~~~------~~~~l~~~~~iViDEah~~~~~---------------~~ 279 (494)
+.++.+..+.... -.++|+|+|...+- ++++. .......+.+.|+||+|.++-+ ..
T Consensus 153 i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~~~~~~ 230 (764)
T PRK12326 153 ITEESTPEERRAA--YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGSTPGEAP 230 (764)
T ss_pred ECCCCCHHHHHHH--HcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCCCcchhH
Confidence 9888765544333 35899999987642 22221 1223466889999999986500 01
Q ss_pred HHHHHHHHHHCCC-------------------------------------------------------------------
Q 011079 280 QPSVEQLIRFLPA------------------------------------------------------------------- 292 (494)
Q Consensus 280 ~~~~~~~~~~~~~------------------------------------------------------------------- 292 (494)
...+..++..+..
T Consensus 231 y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dge 310 (764)
T PRK12326 231 RGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYIVRDGK 310 (764)
T ss_pred HHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEEEECCE
Confidence 1111111111100
Q ss_pred ---------------------------------------------------CCcEEEEEeecCcchHHHHHhhcCCCeEE
Q 011079 293 ---------------------------------------------------NRQILMFSATFPVTVKDFKDKYLQKPYVI 321 (494)
Q Consensus 293 ---------------------------------------------------~~~~i~~SATl~~~~~~~~~~~~~~~~~~ 321 (494)
-.++-+||+|......++...|--+ ++
T Consensus 311 V~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~--Vv 388 (764)
T PRK12326 311 VHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLG--VS 388 (764)
T ss_pred EEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCCc--EE
Confidence 0145667777655444444444322 22
Q ss_pred Eecccccc--cceeEEEEeehhhhHHHHHHHHH-Hhc-CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHH
Q 011079 322 NLMDELTL--KGITQYYAFVEERQKVHCLNTLF-SKL-QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRN 397 (494)
Q Consensus 322 ~~~~~~~~--~~~~~~~~~~~~~~k~~~l~~ll-~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~ 397 (494)
.++...+. .+. ....+.....|...+..-+ ..+ ...|+||.|.+.+..+.++..|.+.++.+..+++.-...+-.
T Consensus 389 ~IPtnkp~~R~d~-~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~EA~ 467 (764)
T PRK12326 389 VIPPNKPNIREDE-ADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEEAR 467 (764)
T ss_pred ECCCCCCceeecC-CCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhHHH
Confidence 33222111 111 1122334455555554443 332 556999999999999999999999999999999874433322
Q ss_pred HHHHHhhcCCccEEEEcCcccccCCCCC---------------CCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEec
Q 011079 398 RVFHDFRNGACRNLVCTDLFTRGIDIQA---------------VNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLIT 462 (494)
Q Consensus 398 ~i~~~f~~g~~~vlvaT~~~~~Gidi~~---------------v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~ 462 (494)
.|-+.=+. -.|.|||++|+||.||.- =-|||-...+.|..--.|-.||+||.|.||.+-.|++
T Consensus 468 IIa~AG~~--gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lS 545 (764)
T PRK12326 468 IIAEAGKY--GAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVS 545 (764)
T ss_pred HHHhcCCC--CcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEE
Confidence 23233233 358999999999999972 2379999999999999999999999999999999999
Q ss_pred ccchH
Q 011079 463 YEDRF 467 (494)
Q Consensus 463 ~~~~~ 467 (494)
-+|..
T Consensus 546 leDdl 550 (764)
T PRK12326 546 LEDDV 550 (764)
T ss_pred cchhH
Confidence 66544
No 115
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.89 E-value=5.3e-21 Score=196.83 Aligned_cols=280 Identities=22% Similarity=0.279 Sum_probs=191.2
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCC-c
Q 011079 139 GFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLN-I 217 (494)
Q Consensus 139 ~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~-~ 217 (494)
|| .|+..|+--...+..|+++-+.||||.|||+--++..+ ++.. .+.+++||+||..|+.|+.+.+..++...+ .
T Consensus 80 G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl-~~a~--kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~ 155 (1187)
T COG1110 80 GF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSL-YLAK--KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSL 155 (1187)
T ss_pred CC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHH-HHHh--cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCc
Confidence 44 89999999999999999999999999999985333222 2222 235899999999999999999999987766 3
Q ss_pred EEEE-EECCCChHH---HHHHhc-CCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCC-----------cHH
Q 011079 218 QVMV-TTGGTSLKD---DIMRLY-QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE-----------FQP 281 (494)
Q Consensus 218 ~~~~-~~g~~~~~~---~~~~~~-~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~-----------~~~ 281 (494)
.+.. .++.-+..+ ...++. ...+|+|+|..-|......-. --+|++|++|++|.++..+ |..
T Consensus 156 ~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~--~~kFdfifVDDVDA~LkaskNvDriL~LlGf~e 233 (1187)
T COG1110 156 DVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELS--KLKFDFIFVDDVDAILKASKNVDRLLRLLGFSE 233 (1187)
T ss_pred ceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhc--ccCCCEEEEccHHHHHhccccHHHHHHHcCCCH
Confidence 3333 333322222 222332 468999999987765444311 1369999999999865321 111
Q ss_pred -----------------------HHHHHHHH--------CCCCCcEEEEEeecCcch--HHHHHhhcCCCeEEEeccccc
Q 011079 282 -----------------------SVEQLIRF--------LPANRQILMFSATFPVTV--KDFKDKYLQKPYVINLMDELT 328 (494)
Q Consensus 282 -----------------------~~~~~~~~--------~~~~~~~i~~SATl~~~~--~~~~~~~~~~~~~~~~~~~~~ 328 (494)
.++..++. ..+..++|+.|||..+.- ..+.+..++-. + -.....
T Consensus 234 E~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFe-v--G~~~~~ 310 (1187)
T COG1110 234 EVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFE-V--GSGGEG 310 (1187)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCc-c--Cccchh
Confidence 01111111 123457899999975432 22333333311 0 001122
Q ss_pred ccceeEEEEeehhhhHHHHHHHHHHhcCCCcEEEEecC---hhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhc
Q 011079 329 LKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNS---VNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN 405 (494)
Q Consensus 329 ~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~---~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~ 405 (494)
..++...+... .....+..+++.... -.|||++. ++.++.+++.|...|+++..+|+. ..+.++.|..
T Consensus 311 LRNIvD~y~~~---~~~e~~~elvk~lG~-GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~ 381 (1187)
T COG1110 311 LRNIVDIYVES---ESLEKVVELVKKLGD-GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEE 381 (1187)
T ss_pred hhheeeeeccC---ccHHHHHHHHHHhCC-CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhcc
Confidence 33444443333 444555666666665 47999999 999999999999999999999984 2678999999
Q ss_pred CCccEEEEc----CcccccCCCCC-CCEEEEcCCCC
Q 011079 406 GACRNLVCT----DLFTRGIDIQA-VNVVINFDFPK 436 (494)
Q Consensus 406 g~~~vlvaT----~~~~~Gidi~~-v~~VI~~~~p~ 436 (494)
|+.+|||.+ ..+.+|||+|. ++++|+++.|+
T Consensus 382 GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 382 GEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred CceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 999999876 47899999998 88999999984
No 116
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.88 E-value=5.1e-20 Score=192.22 Aligned_cols=130 Identities=22% Similarity=0.307 Sum_probs=112.5
Q ss_pred HHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccC
Q 011079 344 KVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGI 421 (494)
Q Consensus 344 k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gi 421 (494)
++..+..-+... ...++||||++++.++.+++.|.+.++.+..+||.+++.+|.++++.|++|...|||||+++++|+
T Consensus 427 qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGf 506 (655)
T TIGR00631 427 QVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGL 506 (655)
T ss_pred hHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCe
Confidence 344444444332 456899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcC-----CCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHH
Q 011079 422 DIQAVNVVINFD-----FPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 474 (494)
Q Consensus 422 di~~v~~VI~~~-----~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~ 474 (494)
|+|++++||+++ +|.+..+|+||+|||||. ..|.|+.|++..+......+.+
T Consensus 507 DiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 507 DLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred eeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 999999999988 799999999999999998 5899999999765444444443
No 117
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.88 E-value=2.8e-20 Score=196.47 Aligned_cols=296 Identities=16% Similarity=0.133 Sum_probs=177.6
Q ss_pred CCcHHHHHHHHHHhc----------CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011079 142 RPSPIQEESIPIALT----------GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL 211 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~----------~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (494)
.++++|..|+..+.. .+..+++++||||||+..+..+...+ .....+++|||+|+.+|..|+.+.+..+
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~~~~~~vl~lvdR~~L~~Q~~~~f~~~ 316 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-ELLKNPKVFFVVDRRELDYQLMKEFQSL 316 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hhcCCCeEEEEECcHHHHHHHHHHHHhh
Confidence 378899999987642 24599999999999998655544333 3344568999999999999999999887
Q ss_pred hccCCcEEEEEECCCChHHHHHHhc-CCCeEEEEchHHHHHhHhcCCcc--cccc-ceEEecccccccCCCcHHHHHHHH
Q 011079 212 GKHLNIQVMVTTGGTSLKDDIMRLY-QPVHLLVGTPGRILDLSKKGVCI--LKDC-SMLVMDEADKLLSPEFQPSVEQLI 287 (494)
Q Consensus 212 ~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~~~~~~~~--l~~~-~~iViDEah~~~~~~~~~~~~~~~ 287 (494)
....- .+..+...-...+. ....|+|+|.++|...+...... .... .+||+||||+..... +...+
T Consensus 317 ~~~~~------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~----~~~~l 386 (667)
T TIGR00348 317 QKDCA------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGE----LAKNL 386 (667)
T ss_pred CCCCC------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchH----HHHHH
Confidence 63210 11112222212222 34689999999997643321111 1111 289999999864333 33333
Q ss_pred -HHCCCCCcEEEEEeecCcc----hHHHHHhhcCCCeEEEe-ccccccccee-E--EEEe-----eh-------------
Q 011079 288 -RFLPANRQILMFSATFPVT----VKDFKDKYLQKPYVINL-MDELTLKGIT-Q--YYAF-----VE------------- 340 (494)
Q Consensus 288 -~~~~~~~~~i~~SATl~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~--~~~~-----~~------------- 340 (494)
..+ ++...++||||+-.. .........+++ +... ..+....+.. . ++.. .+
T Consensus 387 ~~~~-p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~-i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~ 464 (667)
T TIGR00348 387 KKAL-KNASFFGFTGTPIFKKDRDTSLTFAYVFGRY-LHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFE 464 (667)
T ss_pred HhhC-CCCcEEEEeCCCcccccccccccccCCCCCe-EEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHH
Confidence 345 456789999996321 111111101111 1111 0000000000 0 0000 00
Q ss_pred -------hhh---------H----------HH-HHHHHHHhc------CCCcEEEEecChhHHHHHHHHHHHc-----CC
Q 011079 341 -------ERQ---------K----------VH-CLNTLFSKL------QINQSIIFCNSVNRVELLAKKITEL-----GY 382 (494)
Q Consensus 341 -------~~~---------k----------~~-~l~~ll~~~------~~~~~lVF~~~~~~~~~l~~~L~~~-----~~ 382 (494)
+.. + .. ....++.+. ..++++|||.++.+|..+++.|.+. +.
T Consensus 465 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~ 544 (667)
T TIGR00348 465 LLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEA 544 (667)
T ss_pred hhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCC
Confidence 000 0 00 111122111 2379999999999999999998765 23
Q ss_pred cEEEEccCCCHH---------------------HHHHHHHHhhc-CCccEEEEcCcccccCCCCCCCEEEEcCCCCCHHH
Q 011079 383 SCFYIHAKMLQD---------------------HRNRVFHDFRN-GACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSET 440 (494)
Q Consensus 383 ~~~~~~~~~~~~---------------------~r~~i~~~f~~-g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~ 440 (494)
..+.+++..+.. ....++++|++ +..+|||+++++.+|+|.|.+.+++..-+.. ...
T Consensus 545 ~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk-~h~ 623 (667)
T TIGR00348 545 SAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLK-YHG 623 (667)
T ss_pred eeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccc-ccH
Confidence 455555543322 12468888875 6889999999999999999999998666444 456
Q ss_pred HHHHhccccCC
Q 011079 441 YLHRVGRSGRF 451 (494)
Q Consensus 441 ~~Qr~GRagR~ 451 (494)
++|.+||+.|.
T Consensus 624 LlQai~R~nR~ 634 (667)
T TIGR00348 624 LLQAIARTNRI 634 (667)
T ss_pred HHHHHHHhccc
Confidence 89999999994
No 118
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=1.1e-20 Score=196.61 Aligned_cols=314 Identities=17% Similarity=0.187 Sum_probs=210.0
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEE
Q 011079 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~ 221 (494)
.++++|.-.--.+..| -|+.+.||+|||+++.+|++.....+. .|.|++|+.-||.+-++++..+...+|+.+++
T Consensus 82 ~~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al~G~---~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~ 156 (913)
T PRK13103 82 RHFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNALSGK---GVHVVTVNDYLARRDANWMRPLYEFLGLSVGI 156 (913)
T ss_pred CcchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHHHcCC---CEEEEeCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 6788887665555444 589999999999999988876655433 68999999999999999999999999999999
Q ss_pred EECCCChHHHHHHhcCCCeEEEEchHHH-HHhHhcC------CccccccceEEeccccccc-CC------------C---
Q 011079 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRI-LDLSKKG------VCILKDCSMLVMDEADKLL-SP------------E--- 278 (494)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~------~~~l~~~~~iViDEah~~~-~~------------~--- 278 (494)
+.++....+....+ .++|+|+|..-| .+.|+.. ......+.++||||+|.++ +. .
T Consensus 157 i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~~~~~~ 234 (913)
T PRK13103 157 VTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQAEDSSK 234 (913)
T ss_pred ECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCCccchH
Confidence 98877655544332 389999999876 2233322 1224788999999999865 10 0
Q ss_pred cHHHHHHHHHHCCC------------------------------------------------------------------
Q 011079 279 FQPSVEQLIRFLPA------------------------------------------------------------------ 292 (494)
Q Consensus 279 ~~~~~~~~~~~~~~------------------------------------------------------------------ 292 (494)
....+..++..+..
T Consensus 235 ~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~i~~AL 314 (913)
T PRK13103 235 LYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTHVYAGL 314 (913)
T ss_pred HHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHHHHHHH
Confidence 00011111111100
Q ss_pred ---------------------------------------------------------------------CCcEEEEEeec
Q 011079 293 ---------------------------------------------------------------------NRQILMFSATF 303 (494)
Q Consensus 293 ---------------------------------------------------------------------~~~~i~~SATl 303 (494)
-.++-+||+|.
T Consensus 315 ~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa 394 (913)
T PRK13103 315 RAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGMTGTA 394 (913)
T ss_pred HHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccCCCCC
Confidence 01344555555
Q ss_pred CcchHHHHHhhcCCCeEEEeccccc--ccceeEEEEeehhhhHHHHHHHHHHh-c-CCCcEEEEecChhHHHHHHHHHHH
Q 011079 304 PVTVKDFKDKYLQKPYVINLMDELT--LKGITQYYAFVEERQKVHCLNTLFSK-L-QINQSIIFCNSVNRVELLAKKITE 379 (494)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~k~~~l~~ll~~-~-~~~~~lVF~~~~~~~~~l~~~L~~ 379 (494)
.....+|...|--+ ++.++...+ ...... ..+.....|...+..-+.. + ...|+||-+.|.+..+.+++.|.+
T Consensus 395 ~te~~Ef~~iY~l~--Vv~IPTnkP~~R~D~~d-~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~ 471 (913)
T PRK13103 395 DTEAFEFRQIYGLD--VVVIPPNKPLARKDFND-LVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKK 471 (913)
T ss_pred HHHHHHHHHHhCCC--EEECCCCCCcccccCCC-eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHH
Confidence 44444443333222 122221111 111111 2344455566655554443 2 466999999999999999999999
Q ss_pred cCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCC-----------------------------------
Q 011079 380 LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQ----------------------------------- 424 (494)
Q Consensus 380 ~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~----------------------------------- 424 (494)
.++..-+++......+-.-|-+.=+ .-.|.||||+|+||.||.
T Consensus 472 ~gi~h~VLNAk~~~~EA~IIa~AG~--~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~ 549 (913)
T PRK13103 472 EGIEHKVLNAKYHEKEAEIIAQAGR--PGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVI 549 (913)
T ss_pred cCCcHHHhccccchhHHHHHHcCCC--CCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHH
Confidence 9998888777644333333332222 345899999999999995
Q ss_pred --CCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchH
Q 011079 425 --AVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRF 467 (494)
Q Consensus 425 --~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~ 467 (494)
+==+||-...+.|..--.|-.|||||-|.||.+-.|++-+|..
T Consensus 550 e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~L 594 (913)
T PRK13103 550 EAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSL 594 (913)
T ss_pred HcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHH
Confidence 1237888888999999999999999999999999999865533
No 119
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.87 E-value=3.6e-22 Score=208.10 Aligned_cols=315 Identities=20% Similarity=0.253 Sum_probs=213.8
Q ss_pred CCCcHHHHHHHHHHh----cCCcEEEEccCCCchhHHhHHHHHHhhhc-CCCceEEEEEcCcHHHHHHHHHHHHHHhccC
Q 011079 141 ERPSPIQEESIPIAL----TGSDILARAKNGTGKTAAFCIPALEKIDQ-DNNVIQVVILVPTRELALQTSQVCKELGKHL 215 (494)
Q Consensus 141 ~~~~~~Q~~~i~~~~----~~~~~ii~~~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~P~~~la~q~~~~~~~~~~~~ 215 (494)
..++.+|.+.+++++ .++++|+..++|-|||.+-+. .|.++.. ..-....|||+|...+.. |.+.+..++
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~-fl~~l~~~~~~~gpflvvvplst~~~-W~~ef~~w~--- 443 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTIT-FLSYLFHSLQIHGPFLVVVPLSTITA-WEREFETWT--- 443 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHH-HHHHHHHhhhccCCeEEEeehhhhHH-HHHHHHHHh---
Confidence 589999999999887 467899999999999987333 3333322 212225799999877643 344455544
Q ss_pred CcEEEEEECCCChHHHHHHhc----C-----CCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHH
Q 011079 216 NIQVMVTTGGTSLKDDIMRLY----Q-----PVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQL 286 (494)
Q Consensus 216 ~~~~~~~~g~~~~~~~~~~~~----~-----~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~ 286 (494)
.+++.+++|....++.++... . ..+++++|+++++. .+..+.--.+.++++||||++-+.. ...+..
T Consensus 444 ~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~Lk--Dk~~L~~i~w~~~~vDeahrLkN~~-~~l~~~- 519 (1373)
T KOG0384|consen 444 DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLK--DKAELSKIPWRYLLVDEAHRLKNDE-SKLYES- 519 (1373)
T ss_pred hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhc--cHhhhccCCcceeeecHHhhcCchH-HHHHHH-
Confidence 688888999887776655431 1 46899999998865 2212223356889999999986533 233333
Q ss_pred HHHCCCCCcEEEEEeecC-cchHHHHH-----------------------------------------------------
Q 011079 287 IRFLPANRQILMFSATFP-VTVKDFKD----------------------------------------------------- 312 (494)
Q Consensus 287 ~~~~~~~~~~i~~SATl~-~~~~~~~~----------------------------------------------------- 312 (494)
+..+..+-+ +++|+|+- ..++++..
T Consensus 520 l~~f~~~~r-llitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~ 598 (1373)
T KOG0384|consen 520 LNQFKMNHR-LLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPP 598 (1373)
T ss_pred HHHhcccce-eeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCC
Confidence 444444443 67788841 11111110
Q ss_pred ------------------------------------------------hhcCCCeEEEecccccccceeE------EEEe
Q 011079 313 ------------------------------------------------KYLQKPYVINLMDELTLKGITQ------YYAF 338 (494)
Q Consensus 313 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~------~~~~ 338 (494)
+..++|+.+.-.++........ +..+
T Consensus 599 k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~l 678 (1373)
T KOG0384|consen 599 KEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQAL 678 (1373)
T ss_pred CcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHH
Confidence 0111122111111110000000 0000
Q ss_pred ehhhhHHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhc---CCccEEEE
Q 011079 339 VEERQKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN---GACRNLVC 413 (494)
Q Consensus 339 ~~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~---g~~~vlva 413 (494)
+....|+-+|..||..+ .+.+||||..-+...+.|+++|..+++..-.+.|.+..+.|...++.|.. ....+|+|
T Consensus 679 I~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLS 758 (1373)
T KOG0384|consen 679 IQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLS 758 (1373)
T ss_pred HHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEe
Confidence 11122333444555544 34599999999999999999999999999999999999999999999984 35667999
Q ss_pred cCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcce--EEEEecccc
Q 011079 414 TDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGL--AVNLITYED 465 (494)
Q Consensus 414 T~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~--~~~l~~~~~ 465 (494)
|.+.+-|||+..++.||+||..+++.+-+|...||+|.|+... +|+|++.+.
T Consensus 759 TRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 759 TRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred cccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 9999999999999999999999999999999999999998754 699999763
No 120
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.87 E-value=4.8e-21 Score=194.30 Aligned_cols=308 Identities=16% Similarity=0.210 Sum_probs=198.8
Q ss_pred CCcHHHHHHHHHHh----cCC-cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 011079 142 RPSPIQEESIPIAL----TGS-DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLN 216 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~----~~~-~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~ 216 (494)
.++.+|..||..+. .|+ .+++++.||+|||.. .+.++..|.+.+...++|+|+.+.+|..|....+..+...-
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrT-Aiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~- 242 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRT-AIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFG- 242 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCccee-HHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCc-
Confidence 58999999998665 444 399999999999987 45577777777777799999999999999988888775432
Q ss_pred cEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcC-----CccccccceEEecccccccCCCcHHHHHHHHHHCC
Q 011079 217 IQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG-----VCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLP 291 (494)
Q Consensus 217 ~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~-----~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~ 291 (494)
-.+..+.+... ..++.|.++|...+....... ......|++||+||||+- ....++.++..+.
T Consensus 243 ~~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg----i~~~~~~I~dYFd 310 (875)
T COG4096 243 TKMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG----IYSEWSSILDYFD 310 (875)
T ss_pred cceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh----HHhhhHHHHHHHH
Confidence 22222222211 125799999999998765543 233456899999999983 3444556666663
Q ss_pred CCCcEEEEEeecCcchHHHHHhhc-CCC------------------eEEEecccccccceeE------------------
Q 011079 292 ANRQILMFSATFPVTVKDFKDKYL-QKP------------------YVINLMDELTLKGITQ------------------ 334 (494)
Q Consensus 292 ~~~~~i~~SATl~~~~~~~~~~~~-~~~------------------~~~~~~~~~~~~~~~~------------------ 334 (494)
.-. +++|||+..+...-...|+ +.| .++.+.......++..
T Consensus 311 A~~--~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd 388 (875)
T COG4096 311 AAT--QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDD 388 (875)
T ss_pred HHH--HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCccc
Confidence 322 4559997654333333333 333 2222221111111110
Q ss_pred -EEEeeh----------hhhHHHHHHHHHHhc----CCCcEEEEecChhHHHHHHHHHHHc-----CCcEEEEccCCCHH
Q 011079 335 -YYAFVE----------ERQKVHCLNTLFSKL----QINQSIIFCNSVNRVELLAKKITEL-----GYSCFYIHAKMLQD 394 (494)
Q Consensus 335 -~~~~~~----------~~~k~~~l~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~ 394 (494)
.+...+ .......+..++... ..+|+||||.+..+|+.+...|.+. +--+..+.+.-.
T Consensus 389 ~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~-- 466 (875)
T COG4096 389 QNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE-- 466 (875)
T ss_pred ccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch--
Confidence 000000 011123344444441 1469999999999999999999875 233556666633
Q ss_pred HHHHHHHHhhc-CC-ccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCC-------CcceEEEEecccc
Q 011079 395 HRNRVFHDFRN-GA-CRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFG-------HLGLAVNLITYED 465 (494)
Q Consensus 395 ~r~~i~~~f~~-g~-~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g-------~~g~~~~l~~~~~ 465 (494)
+-...++.|.. .. ..|.|+.+++.+|||+|.|..+|++..-.|...|.|++||.-|.- +...-|.+++..+
T Consensus 467 ~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~~ 546 (875)
T COG4096 467 QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFVD 546 (875)
T ss_pred hhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhhh
Confidence 23334444543 33 457777799999999999999999999999999999999998841 1233456666544
Q ss_pred hH
Q 011079 466 RF 467 (494)
Q Consensus 466 ~~ 467 (494)
..
T Consensus 547 ~~ 548 (875)
T COG4096 547 NT 548 (875)
T ss_pred hh
Confidence 33
No 121
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.87 E-value=4e-20 Score=191.22 Aligned_cols=307 Identities=20% Similarity=0.242 Sum_probs=200.8
Q ss_pred CCCcHHHHHHHHHHhcC----CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 011079 141 ERPSPIQEESIPIALTG----SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLN 216 (494)
Q Consensus 141 ~~~~~~Q~~~i~~~~~~----~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~ 216 (494)
..+++-|..+++.+.+. +..++.|-||||||-+|+-.+-..+.++. .+||++|-+.|..|+.+.++... +
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gk---qvLvLVPEI~Ltpq~~~rf~~rF---g 270 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGK---QVLVLVPEIALTPQLLARFKARF---G 270 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCC---EEEEEeccccchHHHHHHHHHHh---C
Confidence 36788999999998766 55999999999999999988888887654 89999999999999888777654 3
Q ss_pred cEEEEEECCCCh----HHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEeccccccc--CC---CcHHHHHHHH
Q 011079 217 IQVMVTTGGTSL----KDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLL--SP---EFQPSVEQLI 287 (494)
Q Consensus 217 ~~~~~~~g~~~~----~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~--~~---~~~~~~~~~~ 287 (494)
.++.+++.+-+. ..+.........|+|+|-..+. ..++++++|||||-|.-. +. .+...-..++
T Consensus 271 ~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~ 343 (730)
T COG1198 271 AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVL 343 (730)
T ss_pred CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHHHHHH
Confidence 556666555543 3344444578899999987763 458899999999999632 11 1222222333
Q ss_pred HHCCCCCcEEEEEeecCcchHHHHHhhcCCCeEEEeccccc---ccceeEEEEeehhhh-----HHHHHHHHHHhc-CCC
Q 011079 288 RFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELT---LKGITQYYAFVEERQ-----KVHCLNTLFSKL-QIN 358 (494)
Q Consensus 288 ~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----k~~~l~~ll~~~-~~~ 358 (494)
+.-..++++|+-|||+. ++.+....-+....+.+..... .+.+.-......... ...++..+-+.. .+.
T Consensus 344 Ra~~~~~pvvLgSATPS--LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~ge 421 (730)
T COG1198 344 RAKKENAPVVLGSATPS--LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGE 421 (730)
T ss_pred HHHHhCCCEEEecCCCC--HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCC
Confidence 44446888999999966 5555444333333333333332 111111111000000 122233332222 345
Q ss_pred cEEEEecChh------------------------------------------------------------HHHHHHHHHH
Q 011079 359 QSIIFCNSVN------------------------------------------------------------RVELLAKKIT 378 (494)
Q Consensus 359 ~~lVF~~~~~------------------------------------------------------------~~~~l~~~L~ 378 (494)
++|+|+|.+. -++++.+.|.
T Consensus 422 Q~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~ 501 (730)
T COG1198 422 QVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELK 501 (730)
T ss_pred eEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHH
Confidence 7777776622 2334444444
Q ss_pred Hc--CCcEEEEccCCCHH--HHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCC------------CHHHHH
Q 011079 379 EL--GYSCFYIHAKMLQD--HRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPK------------NSETYL 442 (494)
Q Consensus 379 ~~--~~~~~~~~~~~~~~--~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~------------s~~~~~ 442 (494)
+. +..++.+.++.... .-+.+++.|.+|+.+|||.|.+++.|.|+|+++.|...+... ...-+.
T Consensus 502 ~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~ 581 (730)
T COG1198 502 RLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLM 581 (730)
T ss_pred HHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHH
Confidence 43 45677777765543 346789999999999999999999999999999876444322 233458
Q ss_pred HHhccccCCCCcceEEEEec
Q 011079 443 HRVGRSGRFGHLGLAVNLIT 462 (494)
Q Consensus 443 Qr~GRagR~g~~g~~~~l~~ 462 (494)
|-+|||||.+.+|.+++=..
T Consensus 582 QvaGRAgR~~~~G~VvIQT~ 601 (730)
T COG1198 582 QVAGRAGRAGKPGEVVIQTY 601 (730)
T ss_pred HHHhhhccCCCCCeEEEEeC
Confidence 99999999988888765443
No 122
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.85 E-value=6.5e-20 Score=166.06 Aligned_cols=185 Identities=37% Similarity=0.618 Sum_probs=150.3
Q ss_pred CCCCCCcHHHHHHHHHHhcC-CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 011079 138 KGFERPSPIQEESIPIALTG-SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLN 216 (494)
Q Consensus 138 ~~~~~~~~~Q~~~i~~~~~~-~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~ 216 (494)
.++..++++|.++++.+... +.+++.++||+|||+++..+++..+.... ..+++|++|+..++.|+...+........
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 82 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPSLG 82 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 45778999999999999998 89999999999999999998888877653 23799999999999999888888776554
Q ss_pred cEEEEEECCCChHHHHHHhcCCC-eEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCc
Q 011079 217 IQVMVTTGGTSLKDDIMRLYQPV-HLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQ 295 (494)
Q Consensus 217 ~~~~~~~g~~~~~~~~~~~~~~~-~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~ 295 (494)
.......++.............. +++++|++.+.+...........+++||+||+|.+....+...+..++..++...+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~ 162 (201)
T smart00487 83 LKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQ 162 (201)
T ss_pred eEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccce
Confidence 34444555555444444455555 99999999999988876666788999999999998765788888889888878899
Q ss_pred EEEEEeecCcchHHHHHhhcCCCeEEEe
Q 011079 296 ILMFSATFPVTVKDFKDKYLQKPYVINL 323 (494)
Q Consensus 296 ~i~~SATl~~~~~~~~~~~~~~~~~~~~ 323 (494)
++++|||++.........++.....+..
T Consensus 163 ~v~~saT~~~~~~~~~~~~~~~~~~~~~ 190 (201)
T smart00487 163 LLLLSATPPEEIENLLELFLNDPVFIDV 190 (201)
T ss_pred EEEEecCCchhHHHHHHHhcCCCEEEeC
Confidence 9999999998888888888876554443
No 123
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=2.8e-19 Score=179.46 Aligned_cols=315 Identities=17% Similarity=0.194 Sum_probs=211.9
Q ss_pred CCcHHHHHHHHHHhc----CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011079 142 RPSPIQEESIPIALT----GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI 217 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~----~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (494)
.++++|++.+.++.+ +.-.|+..++|-|||.+.+.++-.....+.-...+|||||. .+..||...+..+... .
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~--~ 281 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPP--F 281 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcc--e
Confidence 578899999998863 45589999999999998544333322222333579999996 5667888888888654 4
Q ss_pred EEEEEECCCCh----------HHHH---HHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHH
Q 011079 218 QVMVTTGGTSL----------KDDI---MRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVE 284 (494)
Q Consensus 218 ~~~~~~g~~~~----------~~~~---~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~ 284 (494)
.|..+++.... ..+. +.......|+++|+..+.- ..+...-..++++|+||.|++-+.. ..+.
T Consensus 282 rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d~l~~~~W~y~ILDEGH~IrNpn--s~is 357 (923)
T KOG0387|consen 282 RVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGDDLLGILWDYVILDEGHRIRNPN--SKIS 357 (923)
T ss_pred EEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCcccccccccEEEecCcccccCCc--cHHH
Confidence 55555554441 1111 1112356799999887632 2333334568999999999987654 2334
Q ss_pred HHHHHCCCCCcEEEEEeecC-cchH-------------------------------------------------------
Q 011079 285 QLIRFLPANRQILMFSATFP-VTVK------------------------------------------------------- 308 (494)
Q Consensus 285 ~~~~~~~~~~~~i~~SATl~-~~~~------------------------------------------------------- 308 (494)
..+..++. .+.|++|+|+- ..+.
T Consensus 358 lackki~T-~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI 436 (923)
T KOG0387|consen 358 LACKKIRT-VHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLI 436 (923)
T ss_pred HHHHhccc-cceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 44455543 34577788830 0000
Q ss_pred ----------------------------------HHHHhhc--------------------------CCCeEEEeccccc
Q 011079 309 ----------------------------------DFKDKYL--------------------------QKPYVINLMDELT 328 (494)
Q Consensus 309 ----------------------------------~~~~~~~--------------------------~~~~~~~~~~~~~ 328 (494)
.....|+ ++|..+.-..+.
T Consensus 437 ~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~- 515 (923)
T KOG0387|consen 437 SPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRDED- 515 (923)
T ss_pred HHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCcccc-
Confidence 0000110 111110000000
Q ss_pred ccceeEEEEeehhhhHHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHH-HcCCcEEEEccCCCHHHHHHHHHHhhc
Q 011079 329 LKGITQYYAFVEERQKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKIT-ELGYSCFYIHAKMLQDHRNRVFHDFRN 405 (494)
Q Consensus 329 ~~~~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~r~~i~~~f~~ 405 (494)
...-..+...+....|+..+..++... .+.++|+|..++.....+...|. ..++.++.+.|..+...|..++++|.+
T Consensus 516 ~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne 595 (923)
T KOG0387|consen 516 EKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNE 595 (923)
T ss_pred cccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcC
Confidence 000000001222345778888887654 45699999999999999999998 579999999999999999999999997
Q ss_pred CCc--cEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcc--eEEEEecccc
Q 011079 406 GAC--RNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLG--LAVNLITYED 465 (494)
Q Consensus 406 g~~--~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g--~~~~l~~~~~ 465 (494)
+.. -+|++|.+.+-|+|+..++-||.||+.|++++-.|..-||=|.|+.- .+|+|++...
T Consensus 596 ~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gT 659 (923)
T KOG0387|consen 596 DESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGT 659 (923)
T ss_pred CCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCc
Confidence 653 34789999999999999999999999999999999999999999864 3588888653
No 124
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.84 E-value=4e-18 Score=183.17 Aligned_cols=329 Identities=19% Similarity=0.196 Sum_probs=200.3
Q ss_pred CCCCCCcHHHHHHHHHH----hcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHH-HHHHHHHh
Q 011079 138 KGFERPSPIQEESIPIA----LTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQT-SQVCKELG 212 (494)
Q Consensus 138 ~~~~~~~~~Q~~~i~~~----~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~-~~~~~~~~ 212 (494)
.|| .+++-|.+....+ .+++.+++.|+||+|||++|++|++... .+.+++|+|||++|+.|+ .+.+..+.
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----~~~~vvI~t~T~~Lq~Ql~~~~i~~l~ 316 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----DQRQIIVSVPTKILQDQIMAEEVKAIQ 316 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----CCCcEEEEeCcHHHHHHHHHHHHHHHH
Confidence 355 6789998855444 3567799999999999999999988754 234899999999999999 56788777
Q ss_pred ccCCcEEEEEECCCChHH-----H------------------------------------------H-------------
Q 011079 213 KHLNIQVMVTTGGTSLKD-----D------------------------------------------I------------- 232 (494)
Q Consensus 213 ~~~~~~~~~~~g~~~~~~-----~------------------------------------------~------------- 232 (494)
..+++++..+.|+..+-. + +
T Consensus 317 ~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~c 396 (820)
T PRK07246 317 EVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSS 396 (820)
T ss_pred HhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCC
Confidence 777777766666554210 0 0
Q ss_pred -----------HHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCC-----c-------HHH-------
Q 011079 233 -----------MRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE-----F-------QPS------- 282 (494)
Q Consensus 233 -----------~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~-----~-------~~~------- 282 (494)
+.-....+|+|++...|+..+.... .+..++++||||||.+.+.. . ...
T Consensus 397 p~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 475 (820)
T PRK07246 397 LFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALSG 475 (820)
T ss_pred CcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHHH
Confidence 0001257899999998877654433 36789999999999864200 0 000
Q ss_pred ------------------------------------HHH-------H--------HHHC---------------------
Q 011079 283 ------------------------------------VEQ-------L--------IRFL--------------------- 290 (494)
Q Consensus 283 ------------------------------------~~~-------~--------~~~~--------------------- 290 (494)
+.. + ...+
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~~ 555 (820)
T PRK07246 476 PLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVTY 555 (820)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcceeE
Confidence 000 0 0000
Q ss_pred ---------------CCCCcEEEEEeecCcc-hHHHHHhhcCCCeEEEecccccccceeEEEEe--eh------hhhH--
Q 011079 291 ---------------PANRQILMFSATFPVT-VKDFKDKYLQKPYVINLMDELTLKGITQYYAF--VE------ERQK-- 344 (494)
Q Consensus 291 ---------------~~~~~~i~~SATl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~k-- 344 (494)
+....+|++||||+.. ...+ ...++-+.............-...+.. .+ ...-
T Consensus 556 l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~~-~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~ 634 (820)
T PRK07246 556 LNSASKAFTHFSQLLPETCKTYFVSATLQISPRVSL-ADLLGFEEYLFHKIEKDKKQDQLVVVDQDMPLVTETSDEVYAE 634 (820)
T ss_pred EEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCcH-HHHcCCCccceecCCCChHHccEEEeCCCCCCCCCCChHHHHH
Confidence 1123678999998621 1123 222221111111000111110001100 01 1111
Q ss_pred --HHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCC
Q 011079 345 --VHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGID 422 (494)
Q Consensus 345 --~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gid 422 (494)
...+..+. ...|++||+++|.+..+.+++.|....+.+ ...|... .+.+++++|+++...||++|..+.+|||
T Consensus 635 ~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD 709 (820)
T PRK07246 635 EIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVD 709 (820)
T ss_pred HHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCC
Confidence 12222333 356899999999999999999997665444 4444322 2466899999998899999999999999
Q ss_pred CCC--CCEEEEcCCCC------------------------------CHHHHHHHhccccCCCCcceEEEEeccc--chHH
Q 011079 423 IQA--VNVVINFDFPK------------------------------NSETYLHRVGRSGRFGHLGLAVNLITYE--DRFN 468 (494)
Q Consensus 423 i~~--v~~VI~~~~p~------------------------------s~~~~~Qr~GRagR~g~~g~~~~l~~~~--~~~~ 468 (494)
+|+ ...||...+|. -...+.|.+||.-|....--++.++++. ....
T Consensus 710 ~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k~Y 789 (820)
T PRK07246 710 FVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTKSY 789 (820)
T ss_pred CCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcccccHH
Confidence 973 55566666553 1234479999999986543356666644 2223
Q ss_pred HHHHHHHhCC
Q 011079 469 LYRIEQELGT 478 (494)
Q Consensus 469 ~~~l~~~~~~ 478 (494)
-..+.+.+..
T Consensus 790 g~~~l~sLP~ 799 (820)
T PRK07246 790 GKQILASLAE 799 (820)
T ss_pred HHHHHHhCCC
Confidence 3445555543
No 125
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=5.7e-19 Score=182.09 Aligned_cols=313 Identities=19% Similarity=0.204 Sum_probs=208.9
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEE
Q 011079 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~ 221 (494)
.|+++|.-.--.+..|+ |+.+.||-|||+++.+|++-....+. .|-|++.+--||..=++++..+...+|+.|++
T Consensus 78 r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~Gk---gVhVVTvNdYLA~RDae~mg~vy~fLGLsvG~ 152 (925)
T PRK12903 78 RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTGK---GVIVSTVNEYLAERDAEEMGKVFNFLGLSVGI 152 (925)
T ss_pred CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcCC---ceEEEecchhhhhhhHHHHHHHHHHhCCceee
Confidence 68888887776666654 89999999999999988865444332 57888888899988888999999999999999
Q ss_pred EECCCChHHHHHHhcCCCeEEEEchHHH-HHhHhcC------CccccccceEEeccccccc-CCC---------------
Q 011079 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRI-LDLSKKG------VCILKDCSMLVMDEADKLL-SPE--------------- 278 (494)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~------~~~l~~~~~iViDEah~~~-~~~--------------- 278 (494)
...+....+.... -.++|+|+|..-| ++.++.. ......+.+.|+||+|.++ +..
T Consensus 153 i~~~~~~~~rr~a--Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~~~~~~ 230 (925)
T PRK12903 153 NKANMDPNLKREA--YACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSN 230 (925)
T ss_pred eCCCCChHHHHHh--ccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCCccchH
Confidence 8876554443333 3589999998765 2233321 2225678899999999865 100
Q ss_pred cHHHHHHHHHHCCC------------------------------------------------------------------
Q 011079 279 FQPSVEQLIRFLPA------------------------------------------------------------------ 292 (494)
Q Consensus 279 ~~~~~~~~~~~~~~------------------------------------------------------------------ 292 (494)
+...+..++..+..
T Consensus 231 ~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~dg~V 310 (925)
T PRK12903 231 LYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVRDGKI 310 (925)
T ss_pred HHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEE
Confidence 11111111221110
Q ss_pred --------------------------------------------------CCcEEEEEeecCcchHHHHHhhcCCCeEEE
Q 011079 293 --------------------------------------------------NRQILMFSATFPVTVKDFKDKYLQKPYVIN 322 (494)
Q Consensus 293 --------------------------------------------------~~~~i~~SATl~~~~~~~~~~~~~~~~~~~ 322 (494)
-.++-+||+|...+..+|...|--+ ++.
T Consensus 311 ~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~--Vv~ 388 (925)
T PRK12903 311 ELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMR--VNV 388 (925)
T ss_pred EEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCC--EEE
Confidence 0134455555544444444333222 222
Q ss_pred ecccccc--cceeEEEEeehhhhHHHHHHHHHH-hc-CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHH
Q 011079 323 LMDELTL--KGITQYYAFVEERQKVHCLNTLFS-KL-QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNR 398 (494)
Q Consensus 323 ~~~~~~~--~~~~~~~~~~~~~~k~~~l~~ll~-~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~ 398 (494)
++...+. .... ...+.....|...+..-+. .+ ...|+||.|.+.+..+.+++.|.+.++..-++++.-...+- .
T Consensus 389 IPTnkP~~R~D~~-d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e~EA-~ 466 (925)
T PRK12903 389 VPTNKPVIRKDEP-DSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNAREA-E 466 (925)
T ss_pred CCCCCCeeeeeCC-CcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchhhHH-H
Confidence 2221111 1111 1223344555555554433 23 45699999999999999999999999999999887433222 2
Q ss_pred HHHHhhcC-CccEEEEcCcccccCCCCCCC--------EEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchH
Q 011079 399 VFHDFRNG-ACRNLVCTDLFTRGIDIQAVN--------VVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRF 467 (494)
Q Consensus 399 i~~~f~~g-~~~vlvaT~~~~~Gidi~~v~--------~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~ 467 (494)
|+. ..| .-.|.|||++|+||.||.--. |||....|.|..--.|..||+||.|.||.+-.|++-.|..
T Consensus 467 IIa--~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~L 542 (925)
T PRK12903 467 IIA--KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQL 542 (925)
T ss_pred HHH--hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchHH
Confidence 332 344 346899999999999997433 8999999999988999999999999999998888866543
No 126
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=7.3e-20 Score=176.92 Aligned_cols=344 Identities=13% Similarity=0.095 Sum_probs=239.6
Q ss_pred CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHH---hcc
Q 011079 138 KGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL---GKH 214 (494)
Q Consensus 138 ~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~---~~~ 214 (494)
+.-+....+|.++++.+.+|+.+++.-.|.+||++++.......+..... ...+++.|+.+++....+.+.-. ...
T Consensus 282 ~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~V~~~~I~~ 360 (1034)
T KOG4150|consen 282 NTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHA-TNSLLPSEMVEHLRNGSKGQVVHVEVIKA 360 (1034)
T ss_pred ccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcc-cceecchhHHHHhhccCCceEEEEEehhh
Confidence 33456789999999999999999999999999999999888777655443 36788899999886543322111 111
Q ss_pred CCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhH-h---cCCccccccceEEecccccccCCCcHHH----HHHH
Q 011079 215 LNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLS-K---KGVCILKDCSMLVMDEADKLLSPEFQPS----VEQL 286 (494)
Q Consensus 215 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~-~---~~~~~l~~~~~iViDEah~~~~~~~~~~----~~~~ 286 (494)
..-.++-.+.+.....+......+..++++.|.++.... . .+...+-...+++.||+|-..- .|... ++.+
T Consensus 361 ~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~~~R~L 439 (1034)
T KOG4150|consen 361 RKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLF-PTKALAQDQLRAL 439 (1034)
T ss_pred hhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeec-chhhHHHHHHHHH
Confidence 122344445555555555555678899999998775422 2 2233344567899999996532 23332 3333
Q ss_pred HHHC-----CCCCcEEEEEeecCcchHHHHHhhcCCC-eEEEecccccccceeEEEEeehh---------hhHHHHHHHH
Q 011079 287 IRFL-----PANRQILMFSATFPVTVKDFKDKYLQKP-YVINLMDELTLKGITQYYAFVEE---------RQKVHCLNTL 351 (494)
Q Consensus 287 ~~~~-----~~~~~~i~~SATl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------~~k~~~l~~l 351 (494)
++.+ ..+.+++-.|||+...+.-....+.-+. ..+.. +-.+.+-.++..+.+. ..++.....+
T Consensus 440 ~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~--DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~ 517 (1034)
T KOG4150|consen 440 SDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTI--DGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHL 517 (1034)
T ss_pred HHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEe--cCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHH
Confidence 3322 3578899999998766555544433222 22222 2233344444444332 1233334444
Q ss_pred HHhc--CCCcEEEEecChhHHHHHHHHHHHc----C----CcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccC
Q 011079 352 FSKL--QINQSIIFCNSVNRVELLAKKITEL----G----YSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGI 421 (494)
Q Consensus 352 l~~~--~~~~~lVF~~~~~~~~~l~~~L~~~----~----~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gi 421 (494)
+.++ .+-++|.||++++.|+.+....+.. + -.+..|.|+...++|.+|....-.|+..-+|||++++-||
T Consensus 518 ~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGI 597 (1034)
T KOG4150|consen 518 FAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGI 597 (1034)
T ss_pred HHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhcc
Confidence 4332 3458999999999999876655432 1 1356788999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEec--ccchHHHHHHHHHhCCCCccCCc
Q 011079 422 DIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLIT--YEDRFNLYRIEQELGTEIKQIPP 485 (494)
Q Consensus 422 di~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~--~~~~~~~~~l~~~~~~~~~~~~~ 485 (494)
||..++.|++.++|.|++++.|..|||||..++..++.+.. +-|...+...+..++.+.+++-.
T Consensus 598 DIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~L 663 (1034)
T KOG4150|consen 598 DIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEELHL 663 (1034)
T ss_pred ccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcceeEE
Confidence 99999999999999999999999999999988887765554 66888888888888888877654
No 127
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.84 E-value=1.3e-18 Score=183.15 Aligned_cols=134 Identities=21% Similarity=0.301 Sum_probs=123.4
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCC-
Q 011079 356 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF- 434 (494)
Q Consensus 356 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~- 434 (494)
...++||||++...++.+++.|.+.++.+..+||.+++.+|..+++.|++|...|+|||+++++|+|+|++++||+++.
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~e 524 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDAD 524 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCc
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999999998774
Q ss_pred ----CCCHHHHHHHhccccCCCCcceEEEEecc---------cchHHHHHHHHHhCCCCccCCcchhhh
Q 011079 435 ----PKNSETYLHRVGRSGRFGHLGLAVNLITY---------EDRFNLYRIEQELGTEIKQIPPHIDQA 490 (494)
Q Consensus 435 ----p~s~~~~~Qr~GRagR~g~~g~~~~l~~~---------~~~~~~~~l~~~~~~~~~~~~~~~~~~ 490 (494)
|.+..+|+||+||+||. ..|.|+.|++. .+....++++..++.....+|..+-+.
T Consensus 525 ifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 592 (652)
T PRK05298 525 KEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTIKKK 592 (652)
T ss_pred ccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhHHHH
Confidence 78999999999999997 68999999994 577788889999999999999877554
No 128
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=1.1e-19 Score=173.33 Aligned_cols=307 Identities=17% Similarity=0.181 Sum_probs=199.4
Q ss_pred CCcHHHHHHHHHHhcC---CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcE
Q 011079 142 RPSPIQEESIPIALTG---SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQ 218 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~---~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~ 218 (494)
.++|+|+.++..+..+ +..||+.|+|+|||++-+.++... ..+|||+|.+...++||...++.+..--.-.
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti------kK~clvLcts~VSVeQWkqQfk~wsti~d~~ 375 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI------KKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQ 375 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee------cccEEEEecCccCHHHHHHHHHhhcccCccc
Confidence 5899999999999855 569999999999998744333321 2379999999999999999999887555555
Q ss_pred EEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcC--------CccccccceEEecccccccCCCcHHHHHHHHHHC
Q 011079 219 VMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG--------VCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFL 290 (494)
Q Consensus 219 ~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~--------~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~ 290 (494)
++.++.+... ....++.|+|+|+.++..--.+. ...-..+.++++||+|-+...-|+.. +...
T Consensus 376 i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRV----lsiv 446 (776)
T KOG1123|consen 376 ICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRV----LSIV 446 (776)
T ss_pred eEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHH----HHHH
Confidence 6666655442 23467899999998875421111 12245689999999998754445444 3333
Q ss_pred CCCCcEEEEEeecCcchHHHHH-hhcCCCeEEEec-----ccccccceeEE-----------------------EEeehh
Q 011079 291 PANRQILMFSATFPVTVKDFKD-KYLQKPYVINLM-----DELTLKGITQY-----------------------YAFVEE 341 (494)
Q Consensus 291 ~~~~~~i~~SATl~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~-----------------------~~~~~~ 341 (494)
...++ +++|||+-.+-.++.+ .|+-.|..+... ..-....+.-. ..++..
T Consensus 447 ~aHcK-LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMN 525 (776)
T KOG1123|consen 447 QAHCK-LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMN 525 (776)
T ss_pred HHHhh-ccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecC
Confidence 33443 8999997433222211 111111111100 00000000101 111112
Q ss_pred hhHHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhc-CCccEEEEcCccc
Q 011079 342 RQKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN-GACRNLVCTDLFT 418 (494)
Q Consensus 342 ~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~-g~~~vlvaT~~~~ 418 (494)
..|.....-+++.+ .+.++|||....-.....+-.|. --.++|..++.+|.+|++.|.- ..+..++-+.+..
T Consensus 526 P~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~-----KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgD 600 (776)
T KOG1123|consen 526 PNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGD 600 (776)
T ss_pred cchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcC-----CceEECCCchhHHHHHHHhcccCCccceEEEeeccC
Confidence 23333333333322 56799999999888877776663 4568899999999999999985 4567788899999
Q ss_pred ccCCCCCCCEEEEcCCC-CCHHHHHHHhccccCCCC---c---ceEEEEecccchHHH
Q 011079 419 RGIDIQAVNVVINFDFP-KNSETYLHRVGRSGRFGH---L---GLAVNLITYEDRFNL 469 (494)
Q Consensus 419 ~Gidi~~v~~VI~~~~p-~s~~~~~Qr~GRagR~g~---~---g~~~~l~~~~~~~~~ 469 (494)
++||+|..+++|..+.- .|..+-.||.||.-|+-+ + ..-|.|++.+....+
T Consensus 601 tSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 601 TSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred ccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHH
Confidence 99999999999987654 477788999999888632 2 334566665544333
No 129
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.83 E-value=1.4e-19 Score=174.96 Aligned_cols=281 Identities=19% Similarity=0.213 Sum_probs=189.6
Q ss_pred cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCC
Q 011079 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQP 238 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 238 (494)
-++-+|||.||||.- +++++.+.. ..++.-|.|.||..+++.+.+. |+.+..++|.......-. ...
T Consensus 193 Ii~H~GPTNSGKTy~----ALqrl~~ak---sGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~~--~~~ 259 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYR----ALQRLKSAK---SGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLDN--GNP 259 (700)
T ss_pred EEEEeCCCCCchhHH----HHHHHhhhc---cceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCCC--CCc
Confidence 366799999999988 777777665 4488889999997766666554 466666676655442211 134
Q ss_pred CeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHH-HHHCCCCCcEEEEEeecCcchHHHHHhhcC-
Q 011079 239 VHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQL-IRFLPANRQILMFSATFPVTVKDFKDKYLQ- 316 (494)
Q Consensus 239 ~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~-~~~~~~~~~~i~~SATl~~~~~~~~~~~~~- 316 (494)
+..+-||-++.. .-..+++.||||++.|.+...+=.+... +........+.+ .+.+.++....+.
T Consensus 260 a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG-----epsvldlV~~i~k~ 326 (700)
T KOG0953|consen 260 AQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG-----EPSVLDLVRKILKM 326 (700)
T ss_pred ccceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC-----CchHHHHHHHHHhh
Confidence 667778877652 2456899999999999887655444433 333323333222 1234444444432
Q ss_pred --CCeEEEecccccccceeEEEEeehhhhHHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCc-EEEEccCCCH
Q 011079 317 --KPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYS-CFYIHAKMLQ 393 (494)
Q Consensus 317 --~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~ 393 (494)
+...+.. |.....-...+.+..-++...+|..| .|-+++.+..+...+.+.+.. +.++||++|+
T Consensus 327 TGd~vev~~------------YeRl~pL~v~~~~~~sl~nlk~GDCv-V~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPP 393 (700)
T KOG0953|consen 327 TGDDVEVRE------------YERLSPLVVEETALGSLSNLKPGDCV-VAFSKKDIFTVKKKIEKAGNHKCAVIYGSLPP 393 (700)
T ss_pred cCCeeEEEe------------ecccCcceehhhhhhhhccCCCCCeE-EEeehhhHHHHHHHHHHhcCcceEEEecCCCC
Confidence 2111111 11111111112333334555667754 477889999999999998766 9999999999
Q ss_pred HHHHHHHHHhhc--CCccEEEEcCcccccCCCCCCCEEEEcCC---------CCCHHHHHHHhccccCCCC---cceEEE
Q 011079 394 DHRNRVFHDFRN--GACRNLVCTDLFTRGIDIQAVNVVINFDF---------PKNSETYLHRVGRSGRFGH---LGLAVN 459 (494)
Q Consensus 394 ~~r~~i~~~f~~--g~~~vlvaT~~~~~Gidi~~v~~VI~~~~---------p~s~~~~~Qr~GRagR~g~---~g~~~~ 459 (494)
+.|..--..|.+ ++++||||||++++|+|+ +++-||+++. +.+..+..|.+|||||.|. .|.+.+
T Consensus 394 eTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTt 472 (700)
T KOG0953|consen 394 ETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTT 472 (700)
T ss_pred chhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEE
Confidence 999999999987 999999999999999999 8999998876 3478899999999999863 255555
Q ss_pred EecccchHHHHHHHHHhCCCCccC
Q 011079 460 LITYEDRFNLYRIEQELGTEIKQI 483 (494)
Q Consensus 460 l~~~~~~~~~~~l~~~~~~~~~~~ 483 (494)
|.. ..+..+.+.+..+.+++
T Consensus 473 l~~----eDL~~L~~~l~~p~epi 492 (700)
T KOG0953|consen 473 LHS----EDLKLLKRILKRPVEPI 492 (700)
T ss_pred eeH----hhHHHHHHHHhCCchHH
Confidence 443 34666666676666554
No 130
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.82 E-value=4.8e-19 Score=180.83 Aligned_cols=157 Identities=17% Similarity=0.124 Sum_probs=110.8
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCC-cEEE
Q 011079 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLN-IQVM 220 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~-~~~~ 220 (494)
.|-.+|.+.+..+-.+..++|+|||.+|||.+...++-..+.... ...++++.|+.+|..|+...+........ ..-.
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD-~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~ 589 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESD-SDVVIYVAPTKALVNQVSANVYARFDTKTFLRGV 589 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcC-CCEEEEecchHHHhhhhhHHHHHhhccCccccch
Confidence 377899999999999999999999999999985555544444444 44789999999999998765544432111 1111
Q ss_pred EEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhc---CCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEE
Q 011079 221 VTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKK---GVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQIL 297 (494)
Q Consensus 221 ~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~---~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i 297 (494)
.+.|... .+...-.-.|.|+|+-|+-+..++.. .....+++++||+||+|.+.+.+-.-.++.++... .+.++
T Consensus 590 sl~g~lt--qEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li--~CP~L 665 (1330)
T KOG0949|consen 590 SLLGDLT--QEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI--PCPFL 665 (1330)
T ss_pred hhHhhhh--HHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--CCCee
Confidence 1222211 11111123689999999988877665 34457889999999999998766566666666665 46689
Q ss_pred EEEeec
Q 011079 298 MFSATF 303 (494)
Q Consensus 298 ~~SATl 303 (494)
++|||+
T Consensus 666 ~LSATi 671 (1330)
T KOG0949|consen 666 VLSATI 671 (1330)
T ss_pred EEeccc
Confidence 999995
No 131
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.82 E-value=3.5e-18 Score=177.41 Aligned_cols=271 Identities=17% Similarity=0.176 Sum_probs=171.5
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEE
Q 011079 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~ 221 (494)
.|+++|.-+.-.+. +.-|+.+.||.|||+++.+|++-.... +..|.|++++..||..-++++..+...+|+.+++
T Consensus 76 r~ydvQlig~l~L~--~G~IaEm~TGEGKTL~a~l~ayl~aL~---G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~ 150 (870)
T CHL00122 76 RHFDVQLIGGLVLN--DGKIAEMKTGEGKTLVATLPAYLNALT---GKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGL 150 (870)
T ss_pred CCCchHhhhhHhhc--CCccccccCCCCchHHHHHHHHHHHhc---CCceEEEeCCHHHHHHHHHHHHHHHHHcCCceee
Confidence 57888876654444 446999999999999999888543332 2368999999999999999999999999999999
Q ss_pred EECCCChHHHHHHhcCCCeEEEEchHHH-----HHhHhc--CCccccccceEEeccccccc-CCC---------------
Q 011079 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRI-----LDLSKK--GVCILKDCSMLVMDEADKLL-SPE--------------- 278 (494)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-----~~~~~~--~~~~l~~~~~iViDEah~~~-~~~--------------- 278 (494)
+.++.+..+.... -.++|+|+|...+ .+.+.. .......+.+.|+||+|.++ +..
T Consensus 151 i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~~~~~~~ 228 (870)
T CHL00122 151 IQEGMSSEERKKN--YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQSKTNID 228 (870)
T ss_pred eCCCCChHHHHHh--cCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCCCccchH
Confidence 8887776554333 3479999998644 332211 12235678999999999865 100
Q ss_pred cHHHHHHHHHHCCC------------------------------------------------------------------
Q 011079 279 FQPSVEQLIRFLPA------------------------------------------------------------------ 292 (494)
Q Consensus 279 ~~~~~~~~~~~~~~------------------------------------------------------------------ 292 (494)
+......+.+.+..
T Consensus 229 ~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dgeV 308 (870)
T CHL00122 229 KYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIVRNNEI 308 (870)
T ss_pred HHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEEEECCEE
Confidence 00001111111100
Q ss_pred --------------------------------------------------CCcEEEEEeecCcchHHHHHhhcCCCeEEE
Q 011079 293 --------------------------------------------------NRQILMFSATFPVTVKDFKDKYLQKPYVIN 322 (494)
Q Consensus 293 --------------------------------------------------~~~~i~~SATl~~~~~~~~~~~~~~~~~~~ 322 (494)
-.++.+||+|......++...|--+ ++.
T Consensus 309 ~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~ 386 (870)
T CHL00122 309 IIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLE--VVC 386 (870)
T ss_pred EEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCCC--EEE
Confidence 0145667777654444443333222 222
Q ss_pred ecccccc--cceeEEEEeehhhhHHHHHH-HHHHhc-CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCC-CHHHHH
Q 011079 323 LMDELTL--KGITQYYAFVEERQKVHCLN-TLFSKL-QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKM-LQDHRN 397 (494)
Q Consensus 323 ~~~~~~~--~~~~~~~~~~~~~~k~~~l~-~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~~~r~ 397 (494)
++...+. ... ....+.....|...+. .+...+ ...|+||-|.+.+..+.+++.|.+.++..-++++.- ..+.-.
T Consensus 387 IPtnkp~~R~d~-~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA 465 (870)
T CHL00122 387 IPTHRPMLRKDL-PDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRES 465 (870)
T ss_pred CCCCCCccceeC-CCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHH
Confidence 3221111 111 1122334444554443 334433 456999999999999999999999999999999863 222223
Q ss_pred HHHHHhhcC-CccEEEEcCcccccCCCC
Q 011079 398 RVFHDFRNG-ACRNLVCTDLFTRGIDIQ 424 (494)
Q Consensus 398 ~i~~~f~~g-~~~vlvaT~~~~~Gidi~ 424 (494)
.|+.. .| .-.|.|||++|+||.||.
T Consensus 466 ~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 466 EIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred HHHHh--cCCCCcEEEeccccCCCcCee
Confidence 33332 23 235899999999999874
No 132
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.80 E-value=3.4e-19 Score=180.25 Aligned_cols=327 Identities=18% Similarity=0.249 Sum_probs=208.7
Q ss_pred HHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCce-EEEEEc-CcHHHHHHHHH-HHHHHhccCCcEEEE
Q 011079 145 PIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVI-QVVILV-PTRELALQTSQ-VCKELGKHLNIQVMV 221 (494)
Q Consensus 145 ~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~-~~lil~-P~~~la~q~~~-~~~~~~~~~~~~~~~ 221 (494)
.+-++.+.++..+..++|.++||+|||+++...+|+.+.+...+. +-.++| |++..+..+++ ++.+-.+..+-.|
T Consensus 381 ~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tv-- 458 (1282)
T KOG0921|consen 381 QYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETC-- 458 (1282)
T ss_pred HHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccc--
Confidence 344555666667777999999999999999999999988765432 334444 99998877765 3444443333222
Q ss_pred EECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccc-cCCCcHHHHHHHHHHCCCCCcEEEEE
Q 011079 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKL-LSPEFQPSVEQLIRFLPANRQILMFS 300 (494)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~S 300 (494)
|....+ +......-..|.+||-+.+++++... +..++++++||.|+. .+.+|...+..-+.....+..+++||
T Consensus 459 --gy~vRf-~Sa~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lms 532 (1282)
T KOG0921|consen 459 --GYNVRF-DSATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMS 532 (1282)
T ss_pred --cccccc-cccccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhh
Confidence 222222 21222234579999999999887764 667899999999963 33344433333333334566777888
Q ss_pred eecCcchHHHHHhhcCCCeEEE---------------------eccccccc---ceeEE------------EEee-----
Q 011079 301 ATFPVTVKDFKDKYLQKPYVIN---------------------LMDELTLK---GITQY------------YAFV----- 339 (494)
Q Consensus 301 ATl~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~---~~~~~------------~~~~----- 339 (494)
||+..+ .+...|-..|.+.. ++...... ...+. -...
T Consensus 533 atIdTd--~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~ 610 (1282)
T KOG0921|consen 533 ATIDTD--LFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYN 610 (1282)
T ss_pred cccchh--hhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhc
Confidence 886522 11111111111110 00000000 00000 0000
Q ss_pred ----------hhhh-HHHHHHHHH----HhcCCCcEEEEecChhHHHHHHHHHHHc-------CCcEEEEccCCCHHHHH
Q 011079 340 ----------EERQ-KVHCLNTLF----SKLQINQSIIFCNSVNRVELLAKKITEL-------GYSCFYIHAKMLQDHRN 397 (494)
Q Consensus 340 ----------~~~~-k~~~l~~ll----~~~~~~~~lVF~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~ 397 (494)
.+.. -..++..++ ...-.+.++||.+.+..+-.|+..|... .+.+++.|+.....++.
T Consensus 611 ~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqr 690 (1282)
T KOG0921|consen 611 ESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQR 690 (1282)
T ss_pred chhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhh
Confidence 0000 112222222 2223568999999999999999988764 56799999999999999
Q ss_pred HHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCC------------------CCHHHHHHHhccccCCCCcceEEE
Q 011079 398 RVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFP------------------KNSETYLHRVGRSGRFGHLGLAVN 459 (494)
Q Consensus 398 ~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p------------------~s~~~~~Qr~GRagR~g~~g~~~~ 459 (494)
++++..+.|..++|+.|+++++.|+|.++.+||+.+.. .|..+..||.||+||. ++|.|++
T Consensus 691 kvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~ 769 (1282)
T KOG0921|consen 691 KVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFH 769 (1282)
T ss_pred hccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-ccccccc
Confidence 99999999999999999999999999999999865432 2566779999999998 6899999
Q ss_pred Eecccc--hHHHHHHHHHhCCCCcc
Q 011079 460 LITYED--RFNLYRIEQELGTEIKQ 482 (494)
Q Consensus 460 l~~~~~--~~~~~~l~~~~~~~~~~ 482 (494)
+..... .......++.+++++.+
T Consensus 770 lcs~arF~~l~~~~t~em~r~plhe 794 (1282)
T KOG0921|consen 770 LCSRARFEALEDHGTAEMFRTPLHE 794 (1282)
T ss_pred ccHHHHHHHHHhcCcHhhhcCccHH
Confidence 987543 33333355555555443
No 133
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.80 E-value=3.1e-18 Score=171.90 Aligned_cols=316 Identities=18% Similarity=0.226 Sum_probs=213.4
Q ss_pred CcHHHHHHHHHHh----cCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcE
Q 011079 143 PSPIQEESIPIAL----TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQ 218 (494)
Q Consensus 143 ~~~~Q~~~i~~~~----~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~ 218 (494)
+.+||.-.++++. .+-+.|+..++|-|||.+ .++.+.+|.+.+....=|||||...|- .|.+.+.+++. .+.
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~~gpHLVVvPsSTle-NWlrEf~kwCP--sl~ 475 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGNPGPHLVVVPSSTLE-NWLREFAKWCP--SLK 475 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCCCCCcEEEecchhHH-HHHHHHHHhCC--ceE
Confidence 7789999988775 344689999999999998 455666666655555679999998873 44555555543 467
Q ss_pred EEEEECCCChHHHHHHhc----CCCeEEEEchHHHHHhH-hcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCC
Q 011079 219 VMVTTGGTSLKDDIMRLY----QPVHLLVGTPGRILDLS-KKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPAN 293 (494)
Q Consensus 219 ~~~~~g~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~~-~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~ 293 (494)
|-..+|....+.+.+... .+.+|+++|+.....-- .+..+.-.+++++|+||+|.+-+.. ...++.++..- .+
T Consensus 476 Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM~I~-An 553 (941)
T KOG0389|consen 476 VEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLMSIN-AN 553 (941)
T ss_pred EEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhcccc-cc
Confidence 777888877666554432 26799999987553211 1112224568999999999876543 44555554432 33
Q ss_pred CcEEEEEeec----------------------------------------------------------------------
Q 011079 294 RQILMFSATF---------------------------------------------------------------------- 303 (494)
Q Consensus 294 ~~~i~~SATl---------------------------------------------------------------------- 303 (494)
..|++|+|+
T Consensus 554 -~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K~qV 632 (941)
T KOG0389|consen 554 -FRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRLKSQV 632 (941)
T ss_pred -ceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 347778883
Q ss_pred ----Ccc----------------------------------------------------------------hHHHHHhhc
Q 011079 304 ----PVT----------------------------------------------------------------VKDFKDKYL 315 (494)
Q Consensus 304 ----~~~----------------------------------------------------------------~~~~~~~~~ 315 (494)
|+. +..+.+..+
T Consensus 633 L~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~il 712 (941)
T KOG0389|consen 633 LKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRIL 712 (941)
T ss_pred HHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHHHHHh
Confidence 000 000000000
Q ss_pred CCCeEEEeccc-----------ccc-------cceeEE---EEeehhhhHHHHHHHHHHhc--CCCcEEEEecChhHHHH
Q 011079 316 QKPYVINLMDE-----------LTL-------KGITQY---YAFVEERQKVHCLNTLFSKL--QINQSIIFCNSVNRVEL 372 (494)
Q Consensus 316 ~~~~~~~~~~~-----------~~~-------~~~~~~---~~~~~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~ 372 (494)
..+.+-..... +.. +.+..+ ....-...|...|..++... .+.++|||..--...+.
T Consensus 713 ~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDI 792 (941)
T KOG0389|consen 713 NEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDI 792 (941)
T ss_pred CchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHH
Confidence 00000000000 000 000000 00001133566677777655 33699999999999999
Q ss_pred HHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCC--ccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccC
Q 011079 373 LAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGA--CRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGR 450 (494)
Q Consensus 373 l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~--~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR 450 (494)
|--.|..+++....+.|...-..|..+++.|...+ .-+|++|.+.+-||++..+++||.+|...++-+-.|.--||+|
T Consensus 793 LE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHR 872 (941)
T KOG0389|consen 793 LEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHR 872 (941)
T ss_pred HHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHh
Confidence 99999999999999999999999999999998654 3458899999999999999999999999999999999999999
Q ss_pred CCCc--ceEEEEecccc
Q 011079 451 FGHL--GLAVNLITYED 465 (494)
Q Consensus 451 ~g~~--g~~~~l~~~~~ 465 (494)
.|+. =.+|.|++...
T Consensus 873 vGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 873 VGQTKPVTVYRLITKST 889 (941)
T ss_pred hCCcceeEEEEEEecCc
Confidence 9974 56788998764
No 134
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.80 E-value=2.5e-17 Score=159.23 Aligned_cols=107 Identities=21% Similarity=0.344 Sum_probs=99.6
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCC-
Q 011079 356 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF- 434 (494)
Q Consensus 356 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~- 434 (494)
.+.++||-+-|++.++.|.++|.+.|+++..+|++...-+|.+++...+.|.++|||.-|.+-+|+|+|.|..|..+|.
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDAD 524 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDAD 524 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecC
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred ----CCCHHHHHHHhccccCCCCcceEEEEecc
Q 011079 435 ----PKNSETYLHRVGRSGRFGHLGLAVNLITY 463 (494)
Q Consensus 435 ----p~s~~~~~Qr~GRagR~g~~g~~~~l~~~ 463 (494)
..|-.+.+|-+|||.|. -.|+++.+.+.
T Consensus 525 KeGFLRse~SLIQtIGRAARN-~~GkvIlYAD~ 556 (663)
T COG0556 525 KEGFLRSERSLIQTIGRAARN-VNGKVILYADK 556 (663)
T ss_pred ccccccccchHHHHHHHHhhc-cCCeEEEEchh
Confidence 55889999999999997 46999888774
No 135
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.79 E-value=2.7e-18 Score=163.88 Aligned_cols=323 Identities=15% Similarity=0.193 Sum_probs=214.1
Q ss_pred CCCCcHHHHHHHHHHh-cCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcE
Q 011079 140 FERPSPIQEESIPIAL-TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQ 218 (494)
Q Consensus 140 ~~~~~~~Q~~~i~~~~-~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~ 218 (494)
+..+.|+|++.+...+ .|..+++..++|-|||++++..+..+..+ ...|||||.. +-..|.+.+.++......
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraE----wplliVcPAs-vrftWa~al~r~lps~~p- 269 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAE----WPLLIVCPAS-VRFTWAKALNRFLPSIHP- 269 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhc----CcEEEEecHH-HhHHHHHHHHHhcccccc-
Confidence 3457899999998776 45679999999999999965444333322 2579999974 455677888887655433
Q ss_pred EEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEE
Q 011079 219 VMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILM 298 (494)
Q Consensus 219 ~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~ 298 (494)
+.++.++.+.. ..+.....|.|++++.+..+... +.-..+.+||+||+|.+-+. -....+.++..+.....+|+
T Consensus 270 i~vv~~~~D~~---~~~~t~~~v~ivSye~ls~l~~~--l~~~~~~vvI~DEsH~Lk~s-ktkr~Ka~~dllk~akhvIL 343 (689)
T KOG1000|consen 270 IFVVDKSSDPL---PDVCTSNTVAIVSYEQLSLLHDI--LKKEKYRVVIFDESHMLKDS-KTKRTKAATDLLKVAKHVIL 343 (689)
T ss_pred eEEEecccCCc---cccccCCeEEEEEHHHHHHHHHH--HhcccceEEEEechhhhhcc-chhhhhhhhhHHHHhhheEE
Confidence 33444443322 11223468999999988664442 22455899999999987543 34446666666666678999
Q ss_pred EEeecC-------------------cchHHHHHhhcCCCe---EEEecc--------------------------ccccc
Q 011079 299 FSATFP-------------------VTVKDFKDKYLQKPY---VINLMD--------------------------ELTLK 330 (494)
Q Consensus 299 ~SATl~-------------------~~~~~~~~~~~~~~~---~~~~~~--------------------------~~~~~ 330 (494)
+|+|+. ++..+|...|..-.. ...... ..+.+
T Consensus 344 LSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpK 423 (689)
T KOG1000|consen 344 LSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPK 423 (689)
T ss_pred ecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 999951 112222222221110 000000 00000
Q ss_pred ceeEEEEe----------------------eh----------------hhhHHHHHHHHHHh------cCCCcEEEEecC
Q 011079 331 GITQYYAF----------------------VE----------------ERQKVHCLNTLFSK------LQINQSIIFCNS 366 (494)
Q Consensus 331 ~~~~~~~~----------------------~~----------------~~~k~~~l~~ll~~------~~~~~~lVF~~~ 366 (494)
.....+ .. ...|...+...+.. .+..+.+|||..
T Consensus 424 --rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH 501 (689)
T KOG1000|consen 424 --RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHH 501 (689)
T ss_pred --ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehh
Confidence 000000 00 01122333333322 244689999999
Q ss_pred hhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcC-CccE-EEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHH
Q 011079 367 VNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNG-ACRN-LVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHR 444 (494)
Q Consensus 367 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g-~~~v-lvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr 444 (494)
....+.+...+.+.++..+.+.|..++..|..+.+.|..+ +.+| +++-.++++|+|+...+.||+..+++++.-.+|.
T Consensus 502 ~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQA 581 (689)
T KOG1000|consen 502 QIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQA 581 (689)
T ss_pred HHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEec
Confidence 9999999999999999999999999999999999999854 3444 6677889999999999999999999999999999
Q ss_pred hccccCCCCcceEEEEec----ccchHHHHHHHHHh
Q 011079 445 VGRSGRFGHLGLAVNLIT----YEDRFNLYRIEQEL 476 (494)
Q Consensus 445 ~GRagR~g~~g~~~~l~~----~~~~~~~~~l~~~~ 476 (494)
--|+.|.|+...+.+.|- ..|......+.+.+
T Consensus 582 EDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL 617 (689)
T KOG1000|consen 582 EDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKL 617 (689)
T ss_pred hhhhhhccccceeeEEEEEecCchHHHHHHHHHHHH
Confidence 999999999877655543 22444445555444
No 136
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.79 E-value=5.3e-17 Score=167.25 Aligned_cols=315 Identities=16% Similarity=0.166 Sum_probs=198.0
Q ss_pred CCcHHHHHHHHHHhc---C-------CcEEEEccCCCchhHHhHHHHHHhhhcCCC----ceEEEEEcCcHHHHHHHHHH
Q 011079 142 RPSPIQEESIPIALT---G-------SDILARAKNGTGKTAAFCIPALEKIDQDNN----VIQVVILVPTRELALQTSQV 207 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~---~-------~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~----~~~~lil~P~~~la~q~~~~ 207 (494)
.++|+|.+.+.-+.. | ..+|+..++|+|||++.+..+...+...+. -.++|||||. .|...|.+.
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 579999999987753 2 238999999999999966666555555443 1478999996 677788888
Q ss_pred HHHHhccCCcEEEEEECCCChH--H--HHHH---hcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcH
Q 011079 208 CKELGKHLNIQVMVTTGGTSLK--D--DIMR---LYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQ 280 (494)
Q Consensus 208 ~~~~~~~~~~~~~~~~g~~~~~--~--~~~~---~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~ 280 (494)
+.++.....+....+++..... . .+.. ..-...|++-+++.+.+..+. ..+..++++|+||.|++-+. .
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~--~ 392 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNS--D 392 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccch--h
Confidence 8887765556666667666630 0 0000 012356888888888755443 44678999999999997553 2
Q ss_pred HHHHHHHHHCCCCCcEEEEEeecC------------------------------------c----------------chH
Q 011079 281 PSVEQLIRFLPANRQILMFSATFP------------------------------------V----------------TVK 308 (494)
Q Consensus 281 ~~~~~~~~~~~~~~~~i~~SATl~------------------------------------~----------------~~~ 308 (494)
..+.+.+..+...+ .|++|+|+= . ++.
T Consensus 393 s~~~kaL~~l~t~r-RVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~ 471 (776)
T KOG0390|consen 393 SLTLKALSSLKTPR-RVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQELR 471 (776)
T ss_pred hHHHHHHHhcCCCc-eEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHH
Confidence 34455666665444 578899950 0 011
Q ss_pred HHHHhhc------------CCCe--EEEec-------------cc---c-----c------------ccceeE-------
Q 011079 309 DFKDKYL------------QKPY--VINLM-------------DE---L-----T------------LKGITQ------- 334 (494)
Q Consensus 309 ~~~~~~~------------~~~~--~~~~~-------------~~---~-----~------------~~~~~~------- 334 (494)
++...|+ ..-. ++... .. . . .+.+..
T Consensus 472 ~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~~ 551 (776)
T KOG0390|consen 472 ELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTEK 551 (776)
T ss_pred HHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccccc
Confidence 1111111 0000 00000 00 0 0 000000
Q ss_pred ------------------EEEeehhhhHHHHHHHHHHhcCCCcEEEEe----cChhHHHHHHHHHHHcCCcEEEEccCCC
Q 011079 335 ------------------YYAFVEERQKVHCLNTLFSKLQINQSIIFC----NSVNRVELLAKKITELGYSCFYIHAKML 392 (494)
Q Consensus 335 ------------------~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~----~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 392 (494)
.........++..|..++... ..++++|+ |-....+.+...+.-.|+.++.+||.|+
T Consensus 552 e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~-~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~ 630 (776)
T KOG0390|consen 552 EKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVI-REKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTS 630 (776)
T ss_pred cccccChHhhhcccccccccccchhhhHHHHHHHHHHHH-hhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCc
Confidence 000000122444455554222 23344444 3333333334444445999999999999
Q ss_pred HHHHHHHHHHhhcC--C-ccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceE--EEEecc
Q 011079 393 QDHRNRVFHDFRNG--A-CRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLA--VNLITY 463 (494)
Q Consensus 393 ~~~r~~i~~~f~~g--~-~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~--~~l~~~ 463 (494)
..+|..+++.|.+- . .-.|.+|.+.+.||++-+...||.+|+.++++.-.|.++||-|.||.-.| |.|++.
T Consensus 631 ~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlat 706 (776)
T KOG0390|consen 631 IKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLAT 706 (776)
T ss_pred hHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecC
Confidence 99999999999853 3 33466778999999999999999999999999999999999999997555 566664
No 137
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.78 E-value=1.7e-17 Score=173.18 Aligned_cols=316 Identities=18% Similarity=0.247 Sum_probs=215.0
Q ss_pred CCcHHHHHHHHHHhc----CCcEEEEccCCCchhHHhHHHHHHhhhcCC------CceEEEEEcCcHHHHHHHHHHHHHH
Q 011079 142 RPSPIQEESIPIALT----GSDILARAKNGTGKTAAFCIPALEKIDQDN------NVIQVVILVPTRELALQTSQVCKEL 211 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~----~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~------~~~~~lil~P~~~la~q~~~~~~~~ 211 (494)
.++.||.+.++++.- +-+.|++..+|-|||++.+..+........ .....|||||+ .|+--|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 368899999998752 246899999999999986554444433321 12247999996 6887788888888
Q ss_pred hccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCC
Q 011079 212 GKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLP 291 (494)
Q Consensus 212 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~ 291 (494)
+.. +++...+|....+...+.-.+..+|+|++++.+.+-... +.-.++.++|+||-|-+-+ -...+.+.++.+.
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN--~ktkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKN--SKTKLTKAVKQLR 1127 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecc--hHHHHHHHHHHHh
Confidence 765 567777888777766666666789999999988642221 2234578999999997754 2455666677776
Q ss_pred CCCcEEEEEeec--------------------------------------------------------------------
Q 011079 292 ANRQILMFSATF-------------------------------------------------------------------- 303 (494)
Q Consensus 292 ~~~~~i~~SATl-------------------------------------------------------------------- 303 (494)
.+.+ +.+|+|+
T Consensus 1128 a~hR-LILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRR 1206 (1549)
T KOG0392|consen 1128 ANHR-LILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRR 1206 (1549)
T ss_pred hcce-EEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 6665 6679993
Q ss_pred ---------Ccc----------------hHHHHHh--------------------------------hcCCCeEEEeccc
Q 011079 304 ---------PVT----------------VKDFKDK--------------------------------YLQKPYVINLMDE 326 (494)
Q Consensus 304 ---------~~~----------------~~~~~~~--------------------------------~~~~~~~~~~~~~ 326 (494)
|+. ..++... ..++|-.+..+..
T Consensus 1207 lKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~h 1286 (1549)
T KOG0392|consen 1207 LKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVH 1286 (1549)
T ss_pred HHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCc
Confidence 000 0000000 0000000000000
Q ss_pred cccc----ceeE---EEEeehhhhHHHHHHHHHHhcCC----------------CcEEEEecChhHHHHHHHHHHHc---
Q 011079 327 LTLK----GITQ---YYAFVEERQKVHCLNTLFSKLQI----------------NQSIIFCNSVNRVELLAKKITEL--- 380 (494)
Q Consensus 327 ~~~~----~~~~---~~~~~~~~~k~~~l~~ll~~~~~----------------~~~lVF~~~~~~~~~l~~~L~~~--- 380 (494)
.... .+.+ ..+.+....|+..|..++..-.. .++||||.-+..++.+.+.|.+.
T Consensus 1287 p~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mp 1366 (1549)
T KOG0392|consen 1287 PDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMP 1366 (1549)
T ss_pred chHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcC
Confidence 0000 0000 00000112356667777654322 37999999999999998888765
Q ss_pred CCcEEEEccCCCHHHHHHHHHHhhcC-CccEEE-EcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcce--
Q 011079 381 GYSCFYIHAKMLQDHRNRVFHDFRNG-ACRNLV-CTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGL-- 456 (494)
Q Consensus 381 ~~~~~~~~~~~~~~~r~~i~~~f~~g-~~~vlv-aT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~-- 456 (494)
.+....+.|..++.+|.++.++|.++ .++||+ +|-+.+-|+|+.+++.||+++-.|++-.-+|.+-||+|.|+.-.
T Consensus 1367 sVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVN 1446 (1549)
T KOG0392|consen 1367 SVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVN 1446 (1549)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeee
Confidence 34456889999999999999999998 788865 66899999999999999999999999999999999999998754
Q ss_pred EEEEecccc
Q 011079 457 AVNLITYED 465 (494)
Q Consensus 457 ~~~l~~~~~ 465 (494)
+|+|++..-
T Consensus 1447 VyRlItrGT 1455 (1549)
T KOG0392|consen 1447 VYRLITRGT 1455 (1549)
T ss_pred eeeehhccc
Confidence 588888653
No 138
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=8.9e-17 Score=166.69 Aligned_cols=127 Identities=18% Similarity=0.189 Sum_probs=97.2
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEE
Q 011079 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~ 221 (494)
.|+++|.-.--.+..| -|+.+.||-|||+++.+|++-....+. .|-||+++.-||..-++++..+...+|+.|++
T Consensus 85 r~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpaylnAL~Gk---gVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~ 159 (939)
T PRK12902 85 RHFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLNALTGK---GVHVVTVNDYLARRDAEWMGQVHRFLGLSVGL 159 (939)
T ss_pred CcchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHHhhcCC---CeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEE
Confidence 5778886665555444 599999999999999988876555433 68999999999999999999999999999999
Q ss_pred EECCCChHHHHHHhcCCCeEEEEchHHH-----HHhHhc--CCccccccceEEeccccccc
Q 011079 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRI-----LDLSKK--GVCILKDCSMLVMDEADKLL 275 (494)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-----~~~~~~--~~~~l~~~~~iViDEah~~~ 275 (494)
+.++....+.. ..-.++|+|+|...| .+.+.. .......+.+.||||+|.++
T Consensus 160 i~~~~~~~err--~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 160 IQQDMSPEERK--KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred ECCCCChHHHH--HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 87766544333 334789999999876 333322 22335778999999999865
No 139
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.78 E-value=5.1e-18 Score=142.90 Aligned_cols=118 Identities=37% Similarity=0.627 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHhcC--CCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCccccc
Q 011079 343 QKVHCLNTLFSKLQ--INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRG 420 (494)
Q Consensus 343 ~k~~~l~~ll~~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~G 420 (494)
.|...+..++.... .+++||||++...++.+++.|.+.+..+..+||.++..+|..+++.|.++..++|++|.++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 57777777777653 7899999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEE
Q 011079 421 IDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNL 460 (494)
Q Consensus 421 idi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l 460 (494)
+|+|.+++||+++.|++...+.|++||++|.|+.|.|+.+
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998888764
No 140
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.78 E-value=4e-16 Score=160.58 Aligned_cols=107 Identities=11% Similarity=0.097 Sum_probs=78.4
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhc----CCccEEEEcCcccccCCC--------
Q 011079 356 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN----GACRNLVCTDLFTRGIDI-------- 423 (494)
Q Consensus 356 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~----g~~~vlvaT~~~~~Gidi-------- 423 (494)
..|.+||.+++...++.+++.|...--..+.+.|..+ .+..+++.|+. |...||++|..+-+|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 5679999999999999999999764223345555432 44667888886 478999999999999999
Q ss_pred --CCCCEEEEcCCCCC-------------------------HHHHHHHhccccCCCCc--ceEEEEeccc
Q 011079 424 --QAVNVVINFDFPKN-------------------------SETYLHRVGRSGRFGHL--GLAVNLITYE 464 (494)
Q Consensus 424 --~~v~~VI~~~~p~s-------------------------~~~~~Qr~GRagR~g~~--g~~~~l~~~~ 464 (494)
+.+..||+..+|.. .-.+.|-+||.-|.... --.+.++++.
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 33888988777641 22347999999997554 3355555644
No 141
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.77 E-value=5.9e-16 Score=169.47 Aligned_cols=109 Identities=15% Similarity=0.145 Sum_probs=81.1
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHcCC--cEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCC--CCEEEE
Q 011079 356 QINQSIIFCNSVNRVELLAKKITELGY--SCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQA--VNVVIN 431 (494)
Q Consensus 356 ~~~~~lVF~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~--v~~VI~ 431 (494)
..|++|||+++.+..+.+++.|..... ....+--++....|.++++.|+.++..||++|..+.+|||+|+ +..||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 568999999999999999999976422 1222222333345788999999998899999999999999998 477887
Q ss_pred cCCCC------------------------------CHHHHHHHhccccCCCCcceEEEEeccc
Q 011079 432 FDFPK------------------------------NSETYLHRVGRSGRFGHLGLAVNLITYE 464 (494)
Q Consensus 432 ~~~p~------------------------------s~~~~~Qr~GRagR~g~~g~~~~l~~~~ 464 (494)
..+|. ....+.|.+||.-|....--++++++..
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 77665 1223479999999986554456666644
No 142
>COG4889 Predicted helicase [General function prediction only]
Probab=99.75 E-value=3.2e-18 Score=172.92 Aligned_cols=353 Identities=17% Similarity=0.202 Sum_probs=203.6
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC----CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcC
Q 011079 121 EFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTG----SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVP 196 (494)
Q Consensus 121 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~----~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 196 (494)
+|+.+.. .++..++.-..-..|+|+|..|+++..++ ...=+.+.+|+|||+..+. +.+.+.. .++|+++|
T Consensus 141 DW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala~----~~iL~LvP 214 (1518)
T COG4889 141 DWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALAA----ARILFLVP 214 (1518)
T ss_pred ChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHhh----hheEeecc
Confidence 4444433 34445554445568999999999999876 2255667789999998544 4555544 48999999
Q ss_pred cHHHHHHHHHHHHHHhccCCcEEEEEECCCChH-------------------H------HHHHhcCCCeEEEEchHHHHH
Q 011079 197 TRELALQTSQVCKELGKHLNIQVMVTTGGTSLK-------------------D------DIMRLYQPVHLLVGTPGRILD 251 (494)
Q Consensus 197 ~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~-------------------~------~~~~~~~~~~Ilv~T~~~l~~ 251 (494)
+..|..|..+.+..- ..+.+....++.+.... + ..+.-..+--|+++|++.+..
T Consensus 215 SIsLLsQTlrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~ 293 (1518)
T COG4889 215 SISLLSQTLREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPR 293 (1518)
T ss_pred hHHHHHHHHHHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHH
Confidence 999997766544332 12333333333332221 0 111112356799999999987
Q ss_pred hHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCC-----CCCcEEEEEeecCcc---hHH--------------
Q 011079 252 LSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLP-----ANRQILMFSATFPVT---VKD-------------- 309 (494)
Q Consensus 252 ~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~-----~~~~~i~~SATl~~~---~~~-------------- 309 (494)
.-.-...-+..|++||.||||+.....+...-.....++. +..+.+.||||+.-- .+.
T Consensus 294 i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDD 373 (1518)
T COG4889 294 IKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDD 373 (1518)
T ss_pred HHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccch
Confidence 6555455688999999999998532111111011111111 123457889995210 000
Q ss_pred ----------------HHHhhcCCCeEEEe--cccccccceeEEEEeehhhhHHHHH-------HHHHHhc---------
Q 011079 310 ----------------FKDKYLQKPYVINL--MDELTLKGITQYYAFVEERQKVHCL-------NTLFSKL--------- 355 (494)
Q Consensus 310 ----------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~k~~~l-------~~ll~~~--------- 355 (494)
.....+.+..++.+ ........+.....-.......+-. ..+.+..
T Consensus 374 e~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~ 453 (1518)
T COG4889 374 ELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNI 453 (1518)
T ss_pred hhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCC
Confidence 00111111111111 1111111111100001111111111 1121111
Q ss_pred -----CCCcEEEEecChhHHHHHHHHHHH---------------cCCcEEEEccCCCHHHHHHHHH---HhhcCCccEEE
Q 011079 356 -----QINQSIIFCNSVNRVELLAKKITE---------------LGYSCFYIHAKMLQDHRNRVFH---DFRNGACRNLV 412 (494)
Q Consensus 356 -----~~~~~lVF~~~~~~~~~l~~~L~~---------------~~~~~~~~~~~~~~~~r~~i~~---~f~~g~~~vlv 412 (494)
+..+.|-||.+.+....+++.+.. +.+.+-.+.|.|+..+|...+. .|.+..++||-
T Consensus 454 ~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlS 533 (1518)
T COG4889 454 KADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILS 533 (1518)
T ss_pred cCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeec
Confidence 112578999998888877766543 1345666788999998866554 34678899998
Q ss_pred EcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCC-cceEEEEec---------------ccchHHHHHHHHHh
Q 011079 413 CTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGH-LGLAVNLIT---------------YEDRFNLYRIEQEL 476 (494)
Q Consensus 413 aT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~-~g~~~~l~~---------------~~~~~~~~~l~~~~ 476 (494)
--..+.+|+|+|.++.||++++-.++.+.+|.+||+.|-.. ....|++.. ......++++.+.|
T Consensus 534 NaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIalpegi~p~~~l~~n~nFk~VWqVlnAL 613 (1518)
T COG4889 534 NARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIALPEGIKPLDELVNNTNFKNVWQVLKAL 613 (1518)
T ss_pred cchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEeccCCCCCchHHHhcCccHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999421 122333322 12455667777777
Q ss_pred CCCC
Q 011079 477 GTEI 480 (494)
Q Consensus 477 ~~~~ 480 (494)
+.+-
T Consensus 614 RShD 617 (1518)
T COG4889 614 RSHD 617 (1518)
T ss_pred HhcC
Confidence 5543
No 143
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.74 E-value=7.5e-17 Score=137.38 Aligned_cols=144 Identities=40% Similarity=0.510 Sum_probs=111.9
Q ss_pred CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcC
Q 011079 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQ 237 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 237 (494)
+++++.++||+|||++++..+....... ...+++|+||++.++.++.+.+...... ...+..+.+.............
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~-~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL-KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc-cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcC
Confidence 3589999999999999888887776652 3348999999999999998888877655 6777777777766665555567
Q ss_pred CCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEeec
Q 011079 238 PVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATF 303 (494)
Q Consensus 238 ~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SATl 303 (494)
..+|+++|++.+.............+++||+||+|.+....+...............+++++|||+
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 889999999999887776555567899999999999876655443323344455678899999995
No 144
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.72 E-value=2.1e-17 Score=125.49 Aligned_cols=78 Identities=36% Similarity=0.664 Sum_probs=75.4
Q ss_pred HHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCC
Q 011079 375 KKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFG 452 (494)
Q Consensus 375 ~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g 452 (494)
+.|...++.+..+||++++.+|..+++.|.++...|||||+++++|+|+|++++||+++.|++...|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367888999999999999999999999999999999999999999999999999999999999999999999999986
No 145
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.70 E-value=1.5e-15 Score=159.04 Aligned_cols=311 Identities=19% Similarity=0.234 Sum_probs=213.4
Q ss_pred CCcHHHHHHHHHHhcCCc-EEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHH-HHHHHhccCCcEE
Q 011079 142 RPSPIQEESIPIALTGSD-ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQ-VCKELGKHLNIQV 219 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~-~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~-~~~~~~~~~~~~~ 219 (494)
..+|+|.++++.+.+.++ +++.+|+|||||.|+.++++. .....+++++.|.-+.+.-+++ |-+++....|..+
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~ 1218 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRI 1218 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccccCceE
Confidence 448999999999887655 999999999999998888876 2334589999999999887655 6677777788889
Q ss_pred EEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHH------HHHHHHHCCCC
Q 011079 220 MVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPS------VEQLIRFLPAN 293 (494)
Q Consensus 220 ~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~------~~~~~~~~~~~ 293 (494)
..+.|....... +....+|+|+||+++..+ + ....+++.|.||+|.+.. ..++. ++.+...+-++
T Consensus 1219 ~~l~ge~s~~lk---l~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg-~~g~v~evi~S~r~ia~q~~k~ 1289 (1674)
T KOG0951|consen 1219 VKLTGETSLDLK---LLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGG-VYGAVYEVICSMRYIASQLEKK 1289 (1674)
T ss_pred EecCCccccchH---HhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcc-cCCceEEEEeeHHHHHHHHHhh
Confidence 998888877633 335679999999998654 2 477899999999998763 22221 45566666778
Q ss_pred CcEEEEEeecCcchHHHHHhhcCCCeEEEecccccccceeEEEEeehhh---hH-----HHHHHHHHHhc-CCCcEEEEe
Q 011079 294 RQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEER---QK-----VHCLNTLFSKL-QINQSIIFC 364 (494)
Q Consensus 294 ~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k-----~~~l~~ll~~~-~~~~~lVF~ 364 (494)
.+++.+|..+. ..+++ ..+....++++........+.....-+... .. ......+.... ...+.+||+
T Consensus 1290 ir~v~ls~~la-na~d~--ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~ 1366 (1674)
T KOG0951|consen 1290 IRVVALSSSLA-NARDL--IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFL 1366 (1674)
T ss_pred eeEEEeehhhc-cchhh--ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEe
Confidence 88999998865 23333 233333444444333322222211111111 10 11222232222 456899999
Q ss_pred cChhHHHHHHHHHHHc----------------------CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCC
Q 011079 365 NSVNRVELLAKKITEL----------------------GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGID 422 (494)
Q Consensus 365 ~~~~~~~~l~~~L~~~----------------------~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gid 422 (494)
+++++|..++..|... ...+.+-|-+++..++..+-..|..|.+.|+|...- -.|+-
T Consensus 1367 p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~ 1445 (1674)
T KOG0951|consen 1367 PTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTK 1445 (1674)
T ss_pred ccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-ccccc
Confidence 9999998877655431 122333388999999999999999999999998866 66766
Q ss_pred CCCCCEEE----EcC------CCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHH
Q 011079 423 IQAVNVVI----NFD------FPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRI 472 (494)
Q Consensus 423 i~~v~~VI----~~~------~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l 472 (494)
...--+|+ .|| .+.+++...|+.|+|.|+ |+|+++....+...+.++
T Consensus 1446 ~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~---~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1446 LKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA---GKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred ccceEEEEecceeecccccccccCchhHHHHHhhhhcCC---ccEEEEecCchHHHHHHh
Confidence 64433333 122 356789999999999985 689988887777666554
No 146
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=1.7e-15 Score=158.82 Aligned_cols=126 Identities=21% Similarity=0.233 Sum_probs=97.7
Q ss_pred hhhhHHHHHHHHHHh-c-CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcc
Q 011079 340 EERQKVHCLNTLFSK-L-QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLF 417 (494)
Q Consensus 340 ~~~~k~~~l~~ll~~-~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~ 417 (494)
....|...+..-+.. + ...|+||-+.|.+..+.|++.|...++..-++++.....+-.-|-+.=..| .|.||||+|
T Consensus 609 t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMA 686 (1112)
T PRK12901 609 TKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMA 686 (1112)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCc
Confidence 344555555444433 2 556999999999999999999999999888887775544443443433344 489999999
Q ss_pred cccCCCC--------CCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccchH
Q 011079 418 TRGIDIQ--------AVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRF 467 (494)
Q Consensus 418 ~~Gidi~--------~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~ 467 (494)
+||.||. +=-+||-...+.|..--.|..||+||.|.||.+-.|++-+|..
T Consensus 687 GRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdL 744 (1112)
T PRK12901 687 GRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNL 744 (1112)
T ss_pred CCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHH
Confidence 9999997 3347888999999999999999999999999999999866543
No 147
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.67 E-value=6.6e-15 Score=155.21 Aligned_cols=317 Identities=20% Similarity=0.188 Sum_probs=184.1
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHhc----C--Cc--EEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHH
Q 011079 132 LMGIFEKGFERPSPIQEESIPIALT----G--SD--ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQ 203 (494)
Q Consensus 132 ~~~l~~~~~~~~~~~Q~~~i~~~~~----~--~~--~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q 203 (494)
.+.+.+..-...+.+|.+|++.+.. . +. +|-.|.||||||++ -.-|+..+.....+.|..|..-.|.|..|
T Consensus 398 hk~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~a-NARImyaLsd~~~g~RfsiALGLRTLTLQ 476 (1110)
T TIGR02562 398 HKYFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLA-NARAMYALRDDKQGARFAIALGLRSLTLQ 476 (1110)
T ss_pred hhhhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHH-HHHHHHHhCCCCCCceEEEEccccceecc
Confidence 4444333334567899999998874 1 12 56689999999997 34455556666666677777788888877
Q ss_pred HHHHHHHHhccCCcEEEEEECCCChHHHH-------------------------------------------HHhc----
Q 011079 204 TSQVCKELGKHLNIQVMVTTGGTSLKDDI-------------------------------------------MRLY---- 236 (494)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------------------------------------------~~~~---- 236 (494)
.-+.+++...--.-.+.+++|+....+-. ..+.
T Consensus 477 TGda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k 556 (1110)
T TIGR02562 477 TGHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDK 556 (1110)
T ss_pred chHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChh
Confidence 76666654432223334444433221100 0000
Q ss_pred ----CCCeEEEEchHHHHHhHh--cC-Ccccc----ccceEEecccccccCCCcHHHHHHHHHHC-CCCCcEEEEEeecC
Q 011079 237 ----QPVHLLVGTPGRILDLSK--KG-VCILK----DCSMLVMDEADKLLSPEFQPSVEQLIRFL-PANRQILMFSATFP 304 (494)
Q Consensus 237 ----~~~~Ilv~T~~~l~~~~~--~~-~~~l~----~~~~iViDEah~~~~~~~~~~~~~~~~~~-~~~~~~i~~SATl~ 304 (494)
-...++|||++.++.... +. ...+. .-+.|||||+|.+- ......+..++..+ .-..++++||||+|
T Consensus 557 ~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD-~~~~~~L~rlL~w~~~lG~~VlLmSATLP 635 (1110)
T TIGR02562 557 EKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYE-PEDLPALLRLVQLAGLLGSRVLLSSATLP 635 (1110)
T ss_pred hhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCC-HHHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 135799999999887542 21 11111 13679999999753 22334444444422 13577999999999
Q ss_pred cchHHHHH-hh----------cCCC---eEE--Eeccccccc-----------------------------ceeE-EEEe
Q 011079 305 VTVKDFKD-KY----------LQKP---YVI--NLMDELTLK-----------------------------GITQ-YYAF 338 (494)
Q Consensus 305 ~~~~~~~~-~~----------~~~~---~~~--~~~~~~~~~-----------------------------~~~~-~~~~ 338 (494)
+.....+. .| .+.| ..+ .-.++.... .... ....
T Consensus 636 ~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~ 715 (1110)
T TIGR02562 636 PALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLS 715 (1110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEee
Confidence 77655322 22 1211 101 000110000 0000 0001
Q ss_pred ehhh-----hH--------HHHHHHHHHhc----C-CCc----EEEEecChhHHHHHHHHHHHc------CCcEEEEccC
Q 011079 339 VEER-----QK--------VHCLNTLFSKL----Q-INQ----SIIFCNSVNRVELLAKKITEL------GYSCFYIHAK 390 (494)
Q Consensus 339 ~~~~-----~k--------~~~l~~ll~~~----~-~~~----~lVF~~~~~~~~~l~~~L~~~------~~~~~~~~~~ 390 (494)
++.. .. .+.+..+...+ + .++ .||-+.+++.+-.++..|... .+.+.+|||.
T Consensus 716 ~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr 795 (1110)
T TIGR02562 716 LSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQ 795 (1110)
T ss_pred cCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEeccc
Confidence 1110 01 11122222222 1 122 378888888888888887764 3458889999
Q ss_pred CCHHHHHHHHHHh----------------------hc----CCccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHH
Q 011079 391 MLQDHRNRVFHDF----------------------RN----GACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHR 444 (494)
Q Consensus 391 ~~~~~r~~i~~~f----------------------~~----g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr 444 (494)
.+...|..+.+.. .+ +...|+|+|.+++.|+|+ +.+.+|- -|.+..+.+|+
T Consensus 796 ~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~ 872 (1110)
T TIGR02562 796 DPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQL 872 (1110)
T ss_pred ChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHH
Confidence 9888887766543 11 466899999999999999 4555542 36788999999
Q ss_pred hccccCCCC
Q 011079 445 VGRSGRFGH 453 (494)
Q Consensus 445 ~GRagR~g~ 453 (494)
+||+.|-|.
T Consensus 873 aGR~~R~~~ 881 (1110)
T TIGR02562 873 AGRVNRHRL 881 (1110)
T ss_pred hhccccccc
Confidence 999999764
No 148
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.66 E-value=2.6e-15 Score=134.24 Aligned_cols=152 Identities=20% Similarity=0.182 Sum_probs=101.9
Q ss_pred CCcHHHHHHHHHHhc-------CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhcc
Q 011079 142 RPSPIQEESIPIALT-------GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKH 214 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~-------~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~ 214 (494)
.|+++|.+++..+.. .+.+++.+|||||||.+++..+..... +++++||+..|+.|+...+..+...
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 578999999998884 577999999999999997755555443 7999999999999999988666543
Q ss_pred CCcEEEE-----------EECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcC-----------CccccccceEEecccc
Q 011079 215 LNIQVMV-----------TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG-----------VCILKDCSMLVMDEAD 272 (494)
Q Consensus 215 ~~~~~~~-----------~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~-----------~~~l~~~~~iViDEah 272 (494)
....... ...................++++|...+....... ......+++||+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 2111100 11111111222333467789999999998764421 1234567899999999
Q ss_pred cccCCCcHHHHHHHHHHCCCCCcEEEEEeecC
Q 011079 273 KLLSPEFQPSVEQLIRFLPANRQILMFSATFP 304 (494)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SATl~ 304 (494)
++.... .+..++. .....+|+||||+.
T Consensus 157 ~~~~~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 157 HYPSDS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp CTHHHH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred hcCCHH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 864321 1555555 45677899999964
No 149
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.65 E-value=2.8e-13 Score=144.03 Aligned_cols=106 Identities=18% Similarity=0.233 Sum_probs=76.1
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhh----cCCccEEEEcCcccccCCCCC--CCEE
Q 011079 356 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFR----NGACRNLVCTDLFTRGIDIQA--VNVV 429 (494)
Q Consensus 356 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~----~g~~~vlvaT~~~~~Gidi~~--v~~V 429 (494)
..+.+|||+++.+..+.+++.|....-..+..++.. .+..+++.|+ .+...||++|..+.+|||+|+ ++.|
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 445689999999999999999875321234445542 4567776665 467789999999999999987 6789
Q ss_pred EEcCCCCC------------------------------HHHHHHHhccccCCCCcceEEEEeccc
Q 011079 430 INFDFPKN------------------------------SETYLHRVGRSGRFGHLGLAVNLITYE 464 (494)
Q Consensus 430 I~~~~p~s------------------------------~~~~~Qr~GRagR~g~~g~~~~l~~~~ 464 (494)
|...+|.. ...+.|.+||.-|....--++.+++..
T Consensus 610 II~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 610 IITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 88777641 112368999999986543355555544
No 150
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.62 E-value=3.7e-13 Score=144.10 Aligned_cols=130 Identities=15% Similarity=0.133 Sum_probs=88.5
Q ss_pred HHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCc-EEEEccCCCHHHHHHHHHHhhcCCc-cEEEEcCcccccCCCCC
Q 011079 348 LNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYS-CFYIHAKMLQDHRNRVFHDFRNGAC-RNLVCTDLFTRGIDIQA 425 (494)
Q Consensus 348 l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~r~~i~~~f~~g~~-~vlvaT~~~~~Gidi~~ 425 (494)
+..++.. .++++|||+++.+..+.+++.+...... ....+|..+ +..+++.|..+.- .++|+|..+.+|+|+++
T Consensus 471 i~~~~~~-~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g 546 (654)
T COG1199 471 LREILKA-SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPG 546 (654)
T ss_pred HHHHHhh-cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCC
Confidence 3333333 4568999999999999999999876552 445555544 3477888887655 89999999999999998
Q ss_pred --CCEEEEcCCCC------------------------------CHHHHHHHhccccCCCCcceEEEEeccc-chH-HHHH
Q 011079 426 --VNVVINFDFPK------------------------------NSETYLHRVGRSGRFGHLGLAVNLITYE-DRF-NLYR 471 (494)
Q Consensus 426 --v~~VI~~~~p~------------------------------s~~~~~Qr~GRagR~g~~g~~~~l~~~~-~~~-~~~~ 471 (494)
.+.||..++|. -.....|.+||+-|.-..--++.+++.. ... .-..
T Consensus 547 ~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~~~ 626 (654)
T COG1199 547 DALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYGKL 626 (654)
T ss_pred CCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhhHHHH
Confidence 46788777765 2345589999999964443344444432 222 3344
Q ss_pred HHHHhCCCCc
Q 011079 472 IEQELGTEIK 481 (494)
Q Consensus 472 l~~~~~~~~~ 481 (494)
+.+.+.....
T Consensus 627 l~~~l~~~~~ 636 (654)
T COG1199 627 LLDSLPPFPK 636 (654)
T ss_pred HHHhCCCCcc
Confidence 5555554443
No 151
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.59 E-value=8.7e-13 Score=141.41 Aligned_cols=73 Identities=19% Similarity=0.224 Sum_probs=60.6
Q ss_pred CCCCcHHHHHHHHHHh----cCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHh
Q 011079 140 FERPSPIQEESIPIAL----TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELG 212 (494)
Q Consensus 140 ~~~~~~~Q~~~i~~~~----~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~ 212 (494)
|..++|.|.+.+..+. .+.++++.+|||+|||++.+.+++.+....+...++++.+.|..-..|+.+.++++.
T Consensus 8 y~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~~ 84 (705)
T TIGR00604 8 YEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKLM 84 (705)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhhh
Confidence 6667999988776554 677899999999999999999999987755545689999999988888888888753
No 152
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.58 E-value=8.2e-15 Score=112.29 Aligned_cols=81 Identities=37% Similarity=0.713 Sum_probs=77.3
Q ss_pred HHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCC
Q 011079 372 LLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRF 451 (494)
Q Consensus 372 ~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~ 451 (494)
.+++.|.+.++.+..+||.+++.+|..+++.|.++...|||+|+++++|+|++++++||.+++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 011079 452 G 452 (494)
Q Consensus 452 g 452 (494)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 153
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.56 E-value=1.7e-12 Score=135.68 Aligned_cols=130 Identities=16% Similarity=0.196 Sum_probs=89.8
Q ss_pred EccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHH----HHHhcCC
Q 011079 163 RAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDD----IMRLYQP 238 (494)
Q Consensus 163 ~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~ 238 (494)
.+-+|||||.+|+-.+-..+..++ .+||++|...|+.|+.+.+++... +..+..++++....+. .......
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~~Gk---~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~G~ 240 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLRAGR---GALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLRGQ 240 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHHcCC---eEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhCCC
Confidence 334699999999887777766543 799999999999999888876653 1457777776654432 2223455
Q ss_pred CeEEEEchHHHHHhHhcCCccccccceEEeccccccc--CCC---cH-HHHHHHHHHCCCCCcEEEEEeecCc
Q 011079 239 VHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLL--SPE---FQ-PSVEQLIRFLPANRQILMFSATFPV 305 (494)
Q Consensus 239 ~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~--~~~---~~-~~~~~~~~~~~~~~~~i~~SATl~~ 305 (494)
..|+|+|...++ ..+.++++||+||-|.-. +.. +. ..+ .+++....+..+|+.|||.+.
T Consensus 241 ~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdv-A~~Ra~~~~~~lvLgSaTPSl 305 (665)
T PRK14873 241 ARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREV-ALLRAHQHGCALLIGGHARTA 305 (665)
T ss_pred CcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHH-HHHHHHHcCCcEEEECCCCCH
Confidence 799999987663 458899999999999532 111 11 122 223333467889999999763
No 154
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.55 E-value=7.2e-14 Score=144.19 Aligned_cols=309 Identities=18% Similarity=0.242 Sum_probs=199.4
Q ss_pred CCcHHHHHHHHHHhc----CCcEEEEccCCCchhHHhHHHHHHhhhcC-CCceEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 011079 142 RPSPIQEESIPIALT----GSDILARAKNGTGKTAAFCIPALEKIDQD-NNVIQVVILVPTRELALQTSQVCKELGKHLN 216 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~----~~~~ii~~~TGsGKT~~~~~~~l~~l~~~-~~~~~~lil~P~~~la~q~~~~~~~~~~~~~ 216 (494)
.+.+||...+.++.+ +-+-|+..++|-|||.+. +.++.++.+. .....-||+||+..|..+ ...+..++. .
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQt-IsLitYLmE~K~~~GP~LvivPlstL~NW-~~Ef~kWaP--S 469 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQT-ISLITYLMEHKQMQGPFLIIVPLSTLVNW-SSEFPKWAP--S 469 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHH-HHHHHHHHHHcccCCCeEEeccccccCCc-hhhcccccc--c
Confidence 688999999988864 235899999999999883 4444444432 222357999999988644 334444432 3
Q ss_pred cEEEEEECCCChHHHH--HHhcCCCeEEEEchHHHHHhHhcCCcccc--ccceEEecccccccCCCcHHHHHHHHHHCCC
Q 011079 217 IQVMVTTGGTSLKDDI--MRLYQPVHLLVGTPGRILDLSKKGVCILK--DCSMLVMDEADKLLSPEFQPSVEQLIRFLPA 292 (494)
Q Consensus 217 ~~~~~~~g~~~~~~~~--~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~--~~~~iViDEah~~~~~~~~~~~~~~~~~~~~ 292 (494)
+......|....+... ........|+++|++.+.. +...|. ++.++||||-|+|.+.. ..+...+.....
T Consensus 470 v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik----dk~lLsKI~W~yMIIDEGHRmKNa~--~KLt~~L~t~y~ 543 (1157)
T KOG0386|consen 470 VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK----DKALLSKISWKYMIIDEGHRMKNAI--CKLTDTLNTHYR 543 (1157)
T ss_pred eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC----CHHHHhccCCcceeecccccccchh--hHHHHHhhcccc
Confidence 4444444443333221 1122578999999998865 222343 45689999999986421 112222221111
Q ss_pred CCcEEEEEeec---------------------------------------------------------------------
Q 011079 293 NRQILMFSATF--------------------------------------------------------------------- 303 (494)
Q Consensus 293 ~~~~i~~SATl--------------------------------------------------------------------- 303 (494)
....+++|+|+
T Consensus 544 ~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKk 623 (1157)
T KOG0386|consen 544 AQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKK 623 (1157)
T ss_pred chhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhH
Confidence 22234444551
Q ss_pred ------CcchHHH------------------------------------------HHhhcCCCeEEEecccccccceeEE
Q 011079 304 ------PVTVKDF------------------------------------------KDKYLQKPYVINLMDELTLKGITQY 335 (494)
Q Consensus 304 ------~~~~~~~------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (494)
|..++.. .++..+.|++..-.+ ..+...
T Consensus 624 eVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve----~~~~~~ 699 (1157)
T KOG0386|consen 624 EVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVE----NSYTLH 699 (1157)
T ss_pred HHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhc----cccccc
Confidence 1111111 111111111110000 000000
Q ss_pred E---EeehhhhHHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcC---C
Q 011079 336 Y---AFVEERQKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNG---A 407 (494)
Q Consensus 336 ~---~~~~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g---~ 407 (494)
+ ..+-...|..+|..++.++ .++++|.||........+.++|.-.++....+.|....++|...++.|..- -
T Consensus 700 ~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~y 779 (1157)
T KOG0386|consen 700 YDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPY 779 (1157)
T ss_pred cChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCce
Confidence 0 1112345777888887765 467999999999999999999999999999999999999999999999853 2
Q ss_pred ccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceE--EEEeccc
Q 011079 408 CRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLA--VNLITYE 464 (494)
Q Consensus 408 ~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~--~~l~~~~ 464 (494)
+.+|++|.+.+.|+|+..++.||.||..+++....|+.-||.|.|+...+ +++.+-.
T Consensus 780 f~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~ 838 (1157)
T KOG0386|consen 780 FIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVN 838 (1157)
T ss_pred eeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhh
Confidence 45688999999999999999999999999999999999999999986554 4555533
No 155
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.54 E-value=2.2e-13 Score=135.54 Aligned_cols=123 Identities=21% Similarity=0.312 Sum_probs=107.8
Q ss_pred hhHHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCc-cEEEEcCccc
Q 011079 342 RQKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGAC-RNLVCTDLFT 418 (494)
Q Consensus 342 ~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~-~vlvaT~~~~ 418 (494)
..|+..|..++.++ .+.++|+|..-.+.++.+.++|.-.++..+.+.|.....+|..++..|....+ -+|++|.+.+
T Consensus 1027 SgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGG 1106 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGG 1106 (1185)
T ss_pred ccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCc
Confidence 44666677777665 44599999999999999999999999999999999999999999999997554 4588999999
Q ss_pred ccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCc--ceEEEEeccc
Q 011079 419 RGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHL--GLAVNLITYE 464 (494)
Q Consensus 419 ~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~--g~~~~l~~~~ 464 (494)
-||++...+.||+||..+++..-.|...||.|-|+. -.+|.|++..
T Consensus 1107 LGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1107 LGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred ccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccc
Confidence 999999999999999999999999999999999886 4478888765
No 156
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.52 E-value=5.9e-13 Score=137.28 Aligned_cols=286 Identities=14% Similarity=0.211 Sum_probs=182.1
Q ss_pred EEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCC
Q 011079 160 ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPV 239 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 239 (494)
.+|.+|+|||||++...++-+.+. ....++|+|.-++.|+.++...++...-. ++....-..+.... ....
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~--~~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv~Y~d~~~~~i~------~~~~ 122 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALK--NPDKSVLVVSHRRSLTKSLAERFKKAGLS-GFVNYLDSDDYIID------GRPY 122 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhcc--CCCCeEEEEEhHHHHHHHHHHHHhhcCCC-cceeeecccccccc------cccc
Confidence 789999999999985444433332 22348999999999998888877654321 22211111111111 0134
Q ss_pred eEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHH-------HHHHHCCCCCcEEEEEeecCcchHHHHH
Q 011079 240 HLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVE-------QLIRFLPANRQILMFSATFPVTVKDFKD 312 (494)
Q Consensus 240 ~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~-------~~~~~~~~~~~~i~~SATl~~~~~~~~~ 312 (494)
+-+++..+.|.+.. ...+.++++|||||+-.++..-|.+.++ .+...+.....+|+|-||+.....++..
T Consensus 123 ~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdFl~ 199 (824)
T PF02399_consen 123 DRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDFLA 199 (824)
T ss_pred CeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHHHH
Confidence 56666666665533 2347789999999998765543332222 2334455677899999999999999999
Q ss_pred hhcCCCeEEEecccccccceeEEEEeeh-------------------------------------hhhHHHHHHHHHHhc
Q 011079 313 KYLQKPYVINLMDELTLKGITQYYAFVE-------------------------------------ERQKVHCLNTLFSKL 355 (494)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~k~~~l~~ll~~~ 355 (494)
.+..+..+..+..+....+........- ..........++...
T Consensus 200 ~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L 279 (824)
T PF02399_consen 200 SCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLARL 279 (824)
T ss_pred HhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHHH
Confidence 8877665554443332222211111000 011223344444444
Q ss_pred C-CCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCE--EEEc
Q 011079 356 Q-INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNV--VINF 432 (494)
Q Consensus 356 ~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~--VI~~ 432 (494)
. +.++-||+.|...++.+++........+..++|.-+..+. +. -++++|++-|.++..|+++...++ |+-|
T Consensus 280 ~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W~~~~VviYT~~itvG~Sf~~~HF~~~f~y 353 (824)
T PF02399_consen 280 NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--WKKYDVVIYTPVITVGLSFEEKHFDSMFAY 353 (824)
T ss_pred hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--ccceeEEEEeceEEEEeccchhhceEEEEE
Confidence 3 4578889999999999999998888899999887666532 22 367899999999999999987543 3323
Q ss_pred CCC----CCHHHHHHHhccccCCCCcceEEEEeccc
Q 011079 433 DFP----KNSETYLHRVGRSGRFGHLGLAVNLITYE 464 (494)
Q Consensus 433 ~~p----~s~~~~~Qr~GRagR~g~~g~~~~l~~~~ 464 (494)
=-| .++.+..|++||+-.-. ....+++++..
T Consensus 354 vk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~~ 388 (824)
T PF02399_consen 354 VKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDAS 388 (824)
T ss_pred ecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEecc
Confidence 112 24557899999996653 46677777754
No 157
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.52 E-value=8.3e-12 Score=122.68 Aligned_cols=235 Identities=19% Similarity=0.205 Sum_probs=168.9
Q ss_pred CCeEEEEchHHHHHhHhc------CCccccccceEEecccccccC--CCcHHHHHHHHHHCCC-----------------
Q 011079 238 PVHLLVGTPGRILDLSKK------GVCILKDCSMLVMDEADKLLS--PEFQPSVEQLIRFLPA----------------- 292 (494)
Q Consensus 238 ~~~Ilv~T~~~l~~~~~~------~~~~l~~~~~iViDEah~~~~--~~~~~~~~~~~~~~~~----------------- 292 (494)
..||||++|=-|...+.. +...|+++.++|+|.||.++- +++...+-+.+...|.
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg 210 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDG 210 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcC
Confidence 689999999877765553 455589999999999997643 3333333333333332
Q ss_pred ----CCcEEEEEeecCcchHHHHHhhcCCCe-EEEeccc--------ccccceeEEEEeehhh-------hHHH-----H
Q 011079 293 ----NRQILMFSATFPVTVKDFKDKYLQKPY-VINLMDE--------LTLKGITQYYAFVEER-------QKVH-----C 347 (494)
Q Consensus 293 ----~~~~i~~SATl~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~~~~-------~k~~-----~ 347 (494)
-+|.|++|+...++...+....+.+.. .+.+... .....+.+.+...+.. .+.+ .
T Consensus 211 ~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~i 290 (442)
T PF06862_consen 211 QAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKI 290 (442)
T ss_pred cchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHH
Confidence 259999999999888888887554431 1221111 1123455555543321 1222 2
Q ss_pred HHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCc--ccccCCCCC
Q 011079 348 LNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL--FTRGIDIQA 425 (494)
Q Consensus 348 l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~--~~~Gidi~~ 425 (494)
+-.+......+.+|||+++--+--.+.+.|++.++....+|...+..+-.++-..|..|..++|+.|.- +=+-..|.+
T Consensus 291 LP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irG 370 (442)
T PF06862_consen 291 LPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRG 370 (442)
T ss_pred HHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecC
Confidence 222222334568999999999999999999999999999999999999999999999999999999974 356678999
Q ss_pred CCEEEEcCCCCCHHHHHHHhccccCCC------CcceEEEEecccchHHHHHH
Q 011079 426 VNVVINFDFPKNSETYLHRVGRSGRFG------HLGLAVNLITYEDRFNLYRI 472 (494)
Q Consensus 426 v~~VI~~~~p~s~~~~~Qr~GRagR~g------~~g~~~~l~~~~~~~~~~~l 472 (494)
+++||+|++|..+.-|...+.-.+... ....|.+||+..|...+.+|
T Consensus 371 i~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 371 IRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred CcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 999999999999988877665444432 25789999999988776665
No 158
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.50 E-value=2.1e-12 Score=134.59 Aligned_cols=123 Identities=18% Similarity=0.256 Sum_probs=105.8
Q ss_pred hhHHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCC--ccEEEEcCcc
Q 011079 342 RQKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGA--CRNLVCTDLF 417 (494)
Q Consensus 342 ~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~--~~vlvaT~~~ 417 (494)
..|+..|.-|++.+ .+.++|||+......+.|-..|+-+|+-.+.+.|...-++|..++++|+.+. ...|++|...
T Consensus 1259 cGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSg 1338 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSG 1338 (1958)
T ss_pred cchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCC
Confidence 34778888888765 4569999999999999999999999999999999999999999999999875 3568899999
Q ss_pred cccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCc--ceEEEEeccc
Q 011079 418 TRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHL--GLAVNLITYE 464 (494)
Q Consensus 418 ~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~--g~~~~l~~~~ 464 (494)
+.|||+.+.+.||+||..+++.--.|.--||.|.|+. =+.|+|+++.
T Consensus 1339 gvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1339 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred ccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 9999999999999999999988777777777776653 4568888865
No 159
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.50 E-value=8.7e-13 Score=126.53 Aligned_cols=110 Identities=20% Similarity=0.296 Sum_probs=95.5
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcC-CccE-EEEcCcccccCCCCCCCEEEEcC
Q 011079 356 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNG-ACRN-LVCTDLFTRGIDIQAVNVVINFD 433 (494)
Q Consensus 356 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g-~~~v-lvaT~~~~~Gidi~~v~~VI~~~ 433 (494)
..-+.|||..-....+.+.=.|.+.|+.|+-+-|+|++..|...++.|.+. .+.| |++-.+.+.-+++....+|+..|
T Consensus 637 ~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmD 716 (791)
T KOG1002|consen 637 RTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMD 716 (791)
T ss_pred cchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeec
Confidence 344889999999999999999999999999999999999999999999975 3444 56667888889999999999999
Q ss_pred CCCCHHHHHHHhccccCCCC--cceEEEEecccc
Q 011079 434 FPKNSETYLHRVGRSGRFGH--LGLAVNLITYED 465 (494)
Q Consensus 434 ~p~s~~~~~Qr~GRagR~g~--~g~~~~l~~~~~ 465 (494)
+.++++--.|...|..|.|+ |=.++.|.-++.
T Consensus 717 PWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 717 PWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred ccccHHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 99999999998889998886 566778877664
No 160
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.40 E-value=9.8e-13 Score=107.95 Aligned_cols=137 Identities=18% Similarity=0.235 Sum_probs=77.9
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhc
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLY 236 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 236 (494)
|+-.++...+|+|||.-++.-++...... +.++|||.|||.++..+.+.++. ..+.+.. ... .. ...
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~--~~rvLvL~PTRvva~em~~aL~~----~~~~~~t--~~~-~~----~~~ 70 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKR--RLRVLVLAPTRVVAEEMYEALKG----LPVRFHT--NAR-MR----THF 70 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHT--T--EEEEESSHHHHHHHHHHTTT----SSEEEES--TTS-S--------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHc--cCeEEEecccHHHHHHHHHHHhc----CCcccCc--eee-ec----ccc
Confidence 34478999999999997555555433332 33899999999998666555442 2233221 111 11 113
Q ss_pred CCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCC--cHHHHHHHHHHCCCCCcEEEEEeecCcchHH
Q 011079 237 QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE--FQPSVEQLIRFLPANRQILMFSATFPVTVKD 309 (494)
Q Consensus 237 ~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~--~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~ 309 (494)
.+.-|-++|...+.+.+.. ...+.++++||+||||..-... +...+... ... ...++|+||||+|....+
T Consensus 71 g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~-~~~-g~~~~i~mTATPPG~~~~ 142 (148)
T PF07652_consen 71 GSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLREL-AES-GEAKVIFMTATPPGSEDE 142 (148)
T ss_dssp SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHH-HHT-TS-EEEEEESS-TT---S
T ss_pred CCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHh-hhc-cCeeEEEEeCCCCCCCCC
Confidence 5667889999998887666 4557899999999999742111 22222222 121 346799999998865543
No 161
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.38 E-value=1.7e-11 Score=127.46 Aligned_cols=314 Identities=19% Similarity=0.226 Sum_probs=191.8
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEE
Q 011079 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~ 221 (494)
.++.+| .+-.+.-...-++-+-||-|||+++.+|+.-....+. .+.+++..--||.--++++..+...+|+.+++
T Consensus 80 ~~~dVQ--liG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gk---gVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~ 154 (822)
T COG0653 80 RHFDVQ--LLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGK---GVHVVTVNDYLARRDAEWMGPLYEFLGLSVGV 154 (822)
T ss_pred ChhhHH--HhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCC---CcEEeeehHHhhhhCHHHHHHHHHHcCCceee
Confidence 344555 4444444445689999999999999888865544433 57888888889888888999999999999999
Q ss_pred EECCCChHHHHHHhcCCCeEEEEchHHH-HHhHh------cCCccccccceEEecccccccC----------C------C
Q 011079 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRI-LDLSK------KGVCILKDCSMLVMDEADKLLS----------P------E 278 (494)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~------~~~~~l~~~~~iViDEah~~~~----------~------~ 278 (494)
...+.+..+.... -.++|.|+|-..| .+.++ ........+.+.|+||+|.++= . .
T Consensus 155 ~~~~m~~~ek~~a--Y~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~~~~ 232 (822)
T COG0653 155 ILAGMSPEEKRAA--YACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAEDSSE 232 (822)
T ss_pred ccCCCChHHHHHH--HhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccccCch
Confidence 8888766555444 3589999998754 11111 1122245678899999997541 0 1
Q ss_pred cHHHHHHHHHHCCCC--------C--------------------------------------------------------
Q 011079 279 FQPSVEQLIRFLPAN--------R-------------------------------------------------------- 294 (494)
Q Consensus 279 ~~~~~~~~~~~~~~~--------~-------------------------------------------------------- 294 (494)
+...+..++..+... .
T Consensus 233 ~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd~e 312 (822)
T COG0653 233 LYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRDGE 312 (822)
T ss_pred HHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEecCe
Confidence 112222222222110 0
Q ss_pred -----------------------------------------------------cEEEEEeecCcchHHHHHhhcCCCeEE
Q 011079 295 -----------------------------------------------------QILMFSATFPVTVKDFKDKYLQKPYVI 321 (494)
Q Consensus 295 -----------------------------------------------------~~i~~SATl~~~~~~~~~~~~~~~~~~ 321 (494)
++.+||+|...+..+|...|..+-..+
T Consensus 313 v~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~vv~i 392 (822)
T COG0653 313 VVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDVVVI 392 (822)
T ss_pred EEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCceeec
Confidence 122222222222233333222221111
Q ss_pred EecccccccceeEEEEeehhhhHHHHHH-HHHHhc-CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHH
Q 011079 322 NLMDELTLKGITQYYAFVEERQKVHCLN-TLFSKL-QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRV 399 (494)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~-~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i 399 (494)
.........+.. ...+.....|...+. .+...+ .+.|+||-+.+.+..+.+.+.|.+.+++..++...-...+-+.+
T Consensus 393 PTnrp~~R~D~~-D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~Ii 471 (822)
T COG0653 393 PTNRPIIRLDEP-DLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAEII 471 (822)
T ss_pred cCCCcccCCCCc-cccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHHHHH
Confidence 111111111111 112233344544443 444333 56799999999999999999999999999888887664444444
Q ss_pred HHHhhcCCccEEEEcCcccccCCCCCCC-----------EEEEcCCCCCHHHHHHHhccccCCCCcceEEEEecccc
Q 011079 400 FHDFRNGACRNLVCTDLFTRGIDIQAVN-----------VVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYED 465 (494)
Q Consensus 400 ~~~f~~g~~~vlvaT~~~~~Gidi~~v~-----------~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~ 465 (494)
-..-..| -|-|||++|++|-||.--. +||-..--.|..--.|-.||+||.|-||.+-.|++-.|
T Consensus 472 a~AG~~g--aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 472 AQAGQPG--AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred hhcCCCC--ccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 3333333 4789999999999987544 34444434455555699999999999999877777554
No 162
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.38 E-value=1.6e-11 Score=136.58 Aligned_cols=123 Identities=21% Similarity=0.281 Sum_probs=104.4
Q ss_pred hHHHHHHHHH-Hh--cCCC--cEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcC--CccEEEEcC
Q 011079 343 QKVHCLNTLF-SK--LQIN--QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNG--ACRNLVCTD 415 (494)
Q Consensus 343 ~k~~~l~~ll-~~--~~~~--~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g--~~~vlvaT~ 415 (494)
.|...+..++ .. .... ++|||++.....+.+...|...++....++|.++...|..+++.|.++ ...++++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 4566666666 22 2334 899999999999999999999998999999999999999999999986 445677778
Q ss_pred cccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcce--EEEEecccc
Q 011079 416 LFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGL--AVNLITYED 465 (494)
Q Consensus 416 ~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~--~~~l~~~~~ 465 (494)
+.+.|+++...++||++|..++++...|...|+.|.|+... +|.+++.+.
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 99999999999999999999999999999999999988654 466777654
No 163
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.38 E-value=1.4e-11 Score=123.10 Aligned_cols=109 Identities=18% Similarity=0.208 Sum_probs=91.3
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhc--C-CccEEEEcCcccccCCCCCCCEEEEc
Q 011079 356 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN--G-ACRNLVCTDLFTRGIDIQAVNVVINF 432 (494)
Q Consensus 356 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~--g-~~~vlvaT~~~~~Gidi~~v~~VI~~ 432 (494)
...+++|...-......+...|.+.|+....+||.....+|..+++.|.. | ....|++-.+.+.|+++-+.+|+|..
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilv 824 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILV 824 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEE
Confidence 44577777777777788889999999999999999999999999999973 4 44446666788999999999999999
Q ss_pred CCCCCHHHHHHHhccccCCCCcceE--EEEeccc
Q 011079 433 DFPKNSETYLHRVGRSGRFGHLGLA--VNLITYE 464 (494)
Q Consensus 433 ~~p~s~~~~~Qr~GRagR~g~~g~~--~~l~~~~ 464 (494)
|+-|+++--.|..-|.-|.|+...+ +.|++..
T Consensus 825 DlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~g 858 (901)
T KOG4439|consen 825 DLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKG 858 (901)
T ss_pred ecccCHHHHHHHHHHHHHhcccCceEEEEEEecC
Confidence 9999999999999999999987554 4556544
No 164
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.28 E-value=9.8e-10 Score=120.30 Aligned_cols=294 Identities=17% Similarity=0.205 Sum_probs=163.2
Q ss_pred CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcC
Q 011079 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQ 237 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 237 (494)
+..+|+.-||||||+.....+ ..+......+.+++|+.++.|-.|+.+.+..+........ ...+...-...+..
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A-~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~l~~ 348 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLA-RLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKELLED 348 (962)
T ss_pred CceEEEeecCCchHHHHHHHH-HHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHHHhc
Confidence 359999999999999844433 3333446667999999999999999999999876543322 23333333344433
Q ss_pred -CCeEEEEchHHHHHhHhcCC-ccc-cccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHH-HHh
Q 011079 238 -PVHLLVGTPGRILDLSKKGV-CIL-KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDF-KDK 313 (494)
Q Consensus 238 -~~~Ilv~T~~~l~~~~~~~~-~~l-~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~-~~~ 313 (494)
...|+|+|.++|-....... ..+ .+==+||+||||+-- ++..-..+-..+ ++...+++|+|+--.-... ...
T Consensus 349 ~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~-~~a~~~gFTGTPi~~~d~~tt~~ 424 (962)
T COG0610 349 GKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKAL-KKAIFIGFTGTPIFKEDKDTTKD 424 (962)
T ss_pred CCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHh-ccceEEEeeCCccccccccchhh
Confidence 35899999999987665531 112 222368999999853 232223333334 3467899999963211111 011
Q ss_pred hcCCCeEE-Eecccccccce-eEEEEee-----------------hh---------------------------hhHHHH
Q 011079 314 YLQKPYVI-NLMDELTLKGI-TQYYAFV-----------------EE---------------------------RQKVHC 347 (494)
Q Consensus 314 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~-----------------~~---------------------------~~k~~~ 347 (494)
.++..... .+.+....... ..+|... +. ......
T Consensus 425 ~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~~~~ 504 (962)
T COG0610 425 VFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRLIRA 504 (962)
T ss_pred hhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHHHHH
Confidence 11221111 11111000000 0000000 00 000011
Q ss_pred HHHHHH-----hcCCCcEEEEecChhHHHHHHHHHHHcCC-----------------------cEEEEccCCCHHHHHHH
Q 011079 348 LNTLFS-----KLQINQSIIFCNSVNRVELLAKKITELGY-----------------------SCFYIHAKMLQDHRNRV 399 (494)
Q Consensus 348 l~~ll~-----~~~~~~~lVF~~~~~~~~~l~~~L~~~~~-----------------------~~~~~~~~~~~~~r~~i 399 (494)
...+.. .....++.+.+.++..+..+.+....... .....|... ...+...
T Consensus 505 a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 583 (962)
T COG0610 505 AKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL-KDEKKDL 583 (962)
T ss_pred HHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHH-HHHHhhh
Confidence 111211 12334677777777755555544333100 000001121 2223334
Q ss_pred HHH--hhcCCccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCC--C-Cc-ceEEEEec
Q 011079 400 FHD--FRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRF--G-HL-GLAVNLIT 462 (494)
Q Consensus 400 ~~~--f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~--g-~~-g~~~~l~~ 462 (494)
..+ .+....++||.++++-+|.|-|.++.+. .|-|.---..+|.+.|+.|. + ++ |..+.|..
T Consensus 584 ~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 584 IKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred hhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 444 3467899999999999999999888776 57778888999999999995 3 23 55555544
No 165
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.26 E-value=2.3e-11 Score=117.74 Aligned_cols=152 Identities=16% Similarity=0.115 Sum_probs=91.6
Q ss_pred HHHHHHHHHhc-------------CCcEEEEccCCCchhHHhHHHHHHhhhcCCCc---eEEEEEcCcHHHHHHHHHHHH
Q 011079 146 IQEESIPIALT-------------GSDILARAKNGTGKTAAFCIPALEKIDQDNNV---IQVVILVPTRELALQTSQVCK 209 (494)
Q Consensus 146 ~Q~~~i~~~~~-------------~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~---~~~lil~P~~~la~q~~~~~~ 209 (494)
+|.+++..++. .+.++++.++|+|||...+..+. .+...... ..+|||||. .+..+|...+.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhccccccccceeEeecc-chhhhhhhhhc
Confidence 47777776632 24599999999999998555444 33322221 259999999 77788999999
Q ss_pred HHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHH-----HhHhcCCccccccceEEecccccccCCCcHHHHH
Q 011079 210 ELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRIL-----DLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVE 284 (494)
Q Consensus 210 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~-----~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~ 284 (494)
++......++....|...............+++++|++.+. .... ...-.++++||+||+|.+-+.. ....
T Consensus 79 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~--~l~~~~~~~vIvDEaH~~k~~~--s~~~ 154 (299)
T PF00176_consen 79 KWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKE--DLKQIKWDRVIVDEAHRLKNKD--SKRY 154 (299)
T ss_dssp HHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTH--HHHTSEEEEEEETTGGGGTTTT--SHHH
T ss_pred cccccccccccccccccccccccccccccceeeecccccccccccccccc--ccccccceeEEEeccccccccc--cccc
Confidence 88865456777766665222222233456799999999998 1111 1112348999999999984332 2233
Q ss_pred HHHHHCCCCCcEEEEEeecC
Q 011079 285 QLIRFLPANRQILMFSATFP 304 (494)
Q Consensus 285 ~~~~~~~~~~~~i~~SATl~ 304 (494)
..+..+. ....+++|||+-
T Consensus 155 ~~l~~l~-~~~~~lLSgTP~ 173 (299)
T PF00176_consen 155 KALRKLR-ARYRWLLSGTPI 173 (299)
T ss_dssp HHHHCCC-ECEEEEE-SS-S
T ss_pred ccccccc-cceEEeeccccc
Confidence 3444454 566789999963
No 166
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=1.9e-10 Score=111.70 Aligned_cols=332 Identities=20% Similarity=0.275 Sum_probs=205.5
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEE-EccCCCch--hHHhHHHHHHhhhc----------------------------CCCc
Q 011079 140 FERPSPIQEESIPIALTGSDILA-RAKNGTGK--TAAFCIPALEKIDQ----------------------------DNNV 188 (494)
Q Consensus 140 ~~~~~~~Q~~~i~~~~~~~~~ii-~~~TGsGK--T~~~~~~~l~~l~~----------------------------~~~~ 188 (494)
-.++++.|.+.+..+.+.+|++. .+..+.|+ +-.|++-+++++.+ +-..
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 34799999999999999999664 44446666 45678888877632 1134
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhccCCc-E--E-------E---------------------EEECCCChH--------
Q 011079 189 IQVVILVPTRELALQTSQVCKELGKHLNI-Q--V-------M---------------------VTTGGTSLK-------- 229 (494)
Q Consensus 189 ~~~lil~P~~~la~q~~~~~~~~~~~~~~-~--~-------~---------------------~~~g~~~~~-------- 229 (494)
++||||||+|+.|..+...+..+.....- + | . .+.|.++..
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 68999999999998887777766332211 0 0 0 011111100
Q ss_pred HHHHHh---cCCCeEEEEchHHHHHhHh------cCCccccccceEEecccccccCCCcHHHHHHH---HHHCCCC----
Q 011079 230 DDIMRL---YQPVHLLVGTPGRILDLSK------KGVCILKDCSMLVMDEADKLLSPEFQPSVEQL---IRFLPAN---- 293 (494)
Q Consensus 230 ~~~~~~---~~~~~Ilv~T~~~l~~~~~------~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~---~~~~~~~---- 293 (494)
.....+ ....+|+||+|=-|.-++. ++...|+++.++|||-||-++...|.. +..+ +..+|..
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEh-l~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEH-LLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHH-HHHHHHHhhcCcccccCC
Confidence 111111 2367999999977765554 234457889999999999876544432 2223 2333321
Q ss_pred -----------------CcEEEEEeecCcchHHHHHhhcCCCe----EEEecccccccc----eeEEEEeeh-------h
Q 011079 294 -----------------RQILMFSATFPVTVKDFKDKYLQKPY----VINLMDELTLKG----ITQYYAFVE-------E 341 (494)
Q Consensus 294 -----------------~~~i~~SATl~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~~-------~ 341 (494)
+|.+++|+--.+....+...+..+.. ...+...-...+ +.+.+..+. .
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCc
Confidence 35666666544444444443332211 111111101000 111111111 1
Q ss_pred hhHHH-HHHHHHHhc---CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcc
Q 011079 342 RQKVH-CLNTLFSKL---QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLF 417 (494)
Q Consensus 342 ~~k~~-~l~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~ 417 (494)
..+.. .+..++... ...-+|||.|+--+--.+..++++..+....+|.-.+...-.++-+.|-.|...||+-|.-+
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 11222 222233222 22357999999999999999999998888888877777777888888999999999999753
Q ss_pred --cccCCCCCCCEEEEcCCCCCHHHH---HHHhccccCCC----CcceEEEEecccchHHHHHH
Q 011079 418 --TRGIDIQAVNVVINFDFPKNSETY---LHRVGRSGRFG----HLGLAVNLITYEDRFNLYRI 472 (494)
Q Consensus 418 --~~Gidi~~v~~VI~~~~p~s~~~~---~Qr~GRagR~g----~~g~~~~l~~~~~~~~~~~l 472 (494)
-+--+|.+|+.||+|.+|..+.-| +-+.+|+.-.| ..-.|.+||+..|...+..+
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENI 676 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHh
Confidence 567899999999999999988755 55666654322 33678999998877655443
No 167
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.20 E-value=7e-10 Score=114.20 Aligned_cols=120 Identities=21% Similarity=0.242 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHHH----------------------cCCcEEEEccCCCHHHHHHH
Q 011079 344 KVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITE----------------------LGYSCFYIHAKMLQDHRNRV 399 (494)
Q Consensus 344 k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~----------------------~~~~~~~~~~~~~~~~r~~i 399 (494)
|+-+|..|+... -+.+.|||..+....+.+-.+|.- .|.+...+.|......|..+
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 344555665543 356899999998888877777754 25678899999999999999
Q ss_pred HHHhhcC----CccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCc--ceEEEEecc
Q 011079 400 FHDFRNG----ACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHL--GLAVNLITY 463 (494)
Q Consensus 400 ~~~f~~g----~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~--g~~~~l~~~ 463 (494)
.+.|.+- .+-.||+|.+.+-|||+-+++-||+||..|+++--.|-+=|+-|.|+. -.+|+|+..
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAq 1276 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQ 1276 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhc
Confidence 9999852 345799999999999999999999999999999999999999999985 444555543
No 168
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.08 E-value=1.4e-09 Score=103.73 Aligned_cols=70 Identities=23% Similarity=0.226 Sum_probs=55.7
Q ss_pred CCcHHHHHHHH----HHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCC---ceEEEEEcCcHHHHHHHHHHHHHH
Q 011079 142 RPSPIQEESIP----IALTGSDILARAKNGTGKTAAFCIPALEKIDQDNN---VIQVVILVPTRELALQTSQVCKEL 211 (494)
Q Consensus 142 ~~~~~Q~~~i~----~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~---~~~~lil~P~~~la~q~~~~~~~~ 211 (494)
.++|.|.+.+. .+..+.++++.+|||+|||++++.|++.++...+. +.+++|+++|..+..|....++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 45999998554 45567889999999999999999999987765333 237899999999988877666654
No 169
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.08 E-value=1.4e-09 Score=103.73 Aligned_cols=70 Identities=23% Similarity=0.226 Sum_probs=55.7
Q ss_pred CCcHHHHHHHH----HHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCC---ceEEEEEcCcHHHHHHHHHHHHHH
Q 011079 142 RPSPIQEESIP----IALTGSDILARAKNGTGKTAAFCIPALEKIDQDNN---VIQVVILVPTRELALQTSQVCKEL 211 (494)
Q Consensus 142 ~~~~~Q~~~i~----~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~---~~~~lil~P~~~la~q~~~~~~~~ 211 (494)
.++|.|.+.+. .+..+.++++.+|||+|||++++.|++.++...+. +.+++|+++|..+..|....++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 45999998554 45567889999999999999999999987765333 237899999999988877666654
No 170
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.86 E-value=5.3e-08 Score=90.43 Aligned_cols=127 Identities=21% Similarity=0.246 Sum_probs=93.5
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEE
Q 011079 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~ 221 (494)
.|++.|.-++-.+..|+ |+...||-|||++..+|+.-....+ ..|-|++.+.-||..=++++..+...+|+.++.
T Consensus 77 ~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G---~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~ 151 (266)
T PF07517_consen 77 RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQG---KGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGI 151 (266)
T ss_dssp ---HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTS---S-EEEEESSHHHHHHHHHHHHHHHHHTT--EEE
T ss_pred cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhc---CCcEEEeccHHHhhccHHHHHHHHHHhhhcccc
Confidence 78999999887776666 9999999999999877776555543 378999999999999999999999999999999
Q ss_pred EECCCChHHHHHHhcCCCeEEEEchHHHHH-hHhc----C--CccccccceEEeccccccc
Q 011079 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRILD-LSKK----G--VCILKDCSMLVMDEADKLL 275 (494)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~-~~~~----~--~~~l~~~~~iViDEah~~~ 275 (494)
...+....+..... .++|+|+|...+.- .++. . ......+.++||||+|.++
T Consensus 152 ~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 152 ITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp EETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred CccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 99987754433332 36799999987743 3321 1 1125678999999999754
No 171
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.76 E-value=7e-07 Score=90.84 Aligned_cols=102 Identities=18% Similarity=0.254 Sum_probs=84.2
Q ss_pred CcEEEEecChhHHHHHHHHHHHc------------------CCcEEEEccCCCHHHHHHHHHHhhcC---CccEEEEcCc
Q 011079 358 NQSIIFCNSVNRVELLAKKITEL------------------GYSCFYIHAKMLQDHRNRVFHDFRNG---ACRNLVCTDL 416 (494)
Q Consensus 358 ~~~lVF~~~~~~~~~l~~~L~~~------------------~~~~~~~~~~~~~~~r~~i~~~f~~g---~~~vlvaT~~ 416 (494)
.++|||.......+.+.+.|.+. ....+.+.|..+..+|++++++|..- ..-++++|..
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 37899999999888888888764 22355678889999999999999852 3457899999
Q ss_pred ccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCCCCcceEEE
Q 011079 417 FTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVN 459 (494)
Q Consensus 417 ~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~g~~~~ 459 (494)
..-||++-..+-+|.++.-+++.--.|.+.|+-|-|+...||+
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~Kpcfv 842 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFV 842 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeE
Confidence 9999999888888888888888888899999999988666654
No 172
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.71 E-value=2.3e-09 Score=112.06 Aligned_cols=223 Identities=18% Similarity=0.259 Sum_probs=139.6
Q ss_pred CCcHHHHHHHHHHhcC-CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEE
Q 011079 142 RPSPIQEESIPIALTG-SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVM 220 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~-~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~ 220 (494)
.+.|+|.+.+-.+.+- .++++-+|||+|||.+|.+++...+...+. .+++|++|-.+|.....+.+.......|+++.
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~-~kvvyIap~kalvker~~Dw~~r~~~~g~k~i 1005 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPG-SKVVYIAPDKALVKERSDDWSKRDELPGIKVI 1005 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCC-ccEEEEcCCchhhcccccchhhhcccCCceeE
Confidence 5567777777665543 468999999999999999999888776655 58999999999998876655555444588898
Q ss_pred EEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcC--CccccccceEEecccccccCCCcHHHHHHHHHHC-------C
Q 011079 221 VTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG--VCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFL-------P 291 (494)
Q Consensus 221 ~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~--~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~-------~ 291 (494)
...|+....-. . ....+|+|+||++.....+.| ...+.+++.+|+||.|++.. +.++.++.+.... +
T Consensus 1006 e~tgd~~pd~~--~-v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~-~rgPVle~ivsr~n~~s~~t~ 1081 (1230)
T KOG0952|consen 1006 ELTGDVTPDVK--A-VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVSRMNYISSQTE 1081 (1230)
T ss_pred eccCccCCChh--h-eecCceEEcccccccCccccccchhhhccccceeecccccccC-CCcceEEEEeeccccCccccC
Confidence 88887665411 1 246799999999998877744 45588999999999998754 4444444332222 2
Q ss_pred CCCcEEEEEeecCcchHHHHHhhcCCCeEEE-------ecccccccceeEEEEeehhh--hHHHHHHHHHHhcCCCcEEE
Q 011079 292 ANRQILMFSATFPVTVKDFKDKYLQKPYVIN-------LMDELTLKGITQYYAFVEER--QKVHCLNTLFSKLQINQSII 362 (494)
Q Consensus 292 ~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~k~~~l~~ll~~~~~~~~lV 362 (494)
+..+.+++|--+ ....++.. +++.....+ ++......+.... .+++.. ........+-...+..++||
T Consensus 1082 ~~vr~~glsta~-~na~dla~-wl~~~~~~nf~~svrpvp~~~~i~gfp~~-~~cprm~smnkpa~qaik~~sp~~p~li 1158 (1230)
T KOG0952|consen 1082 EPVRYLGLSTAL-ANANDLAD-WLNIKDMYNFRPSVRPVPLEVHIDGFPGQ-HYCPRMMSMNKPAFQAIKTHSPIKPVLI 1158 (1230)
T ss_pred cchhhhhHhhhh-hccHHHHH-HhCCCCcCCCCcccccCCceEeecCCCch-hcchhhhhcccHHHHHHhcCCCCCceEE
Confidence 344555555332 22333333 332221111 1112222222221 111111 12234444445556779999
Q ss_pred EecChhHHHH
Q 011079 363 FCNSVNRVEL 372 (494)
Q Consensus 363 F~~~~~~~~~ 372 (494)
|+.+++....
T Consensus 1159 fv~srrqtrl 1168 (1230)
T KOG0952|consen 1159 FVSSRRQTRL 1168 (1230)
T ss_pred Eeeccccccc
Confidence 9998876443
No 173
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.64 E-value=4.6e-07 Score=97.09 Aligned_cols=142 Identities=20% Similarity=0.309 Sum_probs=84.9
Q ss_pred cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHH-----HHhc----cCCcEEEEEECCC---
Q 011079 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCK-----ELGK----HLNIQVMVTTGGT--- 226 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~-----~~~~----~~~~~~~~~~g~~--- 226 (494)
++.+.++||+|||.+|+-.+++.....+. .++||+||+.++-+.+...+. .... ...+..-.+....
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~~~~~-~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k 139 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQKYGL-FKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKK 139 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccc
Confidence 58899999999999998888776555443 479999999988877655443 1111 1123333333221
Q ss_pred ----ChHHHHHHhcC-------CCeEEEEchHHHHHhHh--cC--C-------cccccc----ceEEecccccccCCCcH
Q 011079 227 ----SLKDDIMRLYQ-------PVHLLVGTPGRILDLSK--KG--V-------CILKDC----SMLVMDEADKLLSPEFQ 280 (494)
Q Consensus 227 ----~~~~~~~~~~~-------~~~Ilv~T~~~l~~~~~--~~--~-------~~l~~~----~~iViDEah~~~~~~~~ 280 (494)
........+.. ...|+++|.++|..-.. .. . ..+..+ =+||+||.|++... .
T Consensus 140 ~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~--~ 217 (986)
T PRK15483 140 SGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD--N 217 (986)
T ss_pred cccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc--h
Confidence 11222222221 46899999998854211 10 0 011111 26999999998542 2
Q ss_pred HHHHHHHHHCCCCCcEEEEEeecCc
Q 011079 281 PSVEQLIRFLPANRQILMFSATFPV 305 (494)
Q Consensus 281 ~~~~~~~~~~~~~~~~i~~SATl~~ 305 (494)
..+..+ ..+.+.. ++.+|||.+.
T Consensus 218 k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 218 KFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred HHHHHH-HhcCccc-EEEEeeecCC
Confidence 244444 5554433 5779999975
No 174
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.62 E-value=2.9e-07 Score=82.76 Aligned_cols=123 Identities=20% Similarity=0.223 Sum_probs=73.6
Q ss_pred CCcHHHHHHHHHHhcCC--cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEE
Q 011079 142 RPSPIQEESIPIALTGS--DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQV 219 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~--~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~ 219 (494)
++++-|.+++..++... -+++.|+.|+|||+. +..+...+... +.++++++||...+..+.+.. +
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~--g~~v~~~apT~~Aa~~L~~~~-------~--- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAA--GKRVIGLAPTNKAAKELREKT-------G--- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHT--T--EEEEESSHHHHHHHHHHH-------T---
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhC--CCeEEEECCcHHHHHHHHHhh-------C---
Confidence 36788999999997654 377889999999986 44455555544 358999999988876544431 1
Q ss_pred EEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCC----ccccccceEEecccccccCCCcHHHHHHHHHHCCC-CC
Q 011079 220 MVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGV----CILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPA-NR 294 (494)
Q Consensus 220 ~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~----~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~-~~ 294 (494)
+-..|-..++....... ..+...++||||||-.+. ...+..++...+. +.
T Consensus 68 ---------------------~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~~~~~~ 122 (196)
T PF13604_consen 68 ---------------------IEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLAKKSGA 122 (196)
T ss_dssp ---------------------S-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS-T-T-
T ss_pred ---------------------cchhhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHHHhcCC
Confidence 11233333332222111 115667899999999763 4566777777766 56
Q ss_pred cEEEEEee
Q 011079 295 QILMFSAT 302 (494)
Q Consensus 295 ~~i~~SAT 302 (494)
++|++-=+
T Consensus 123 klilvGD~ 130 (196)
T PF13604_consen 123 KLILVGDP 130 (196)
T ss_dssp EEEEEE-T
T ss_pred EEEEECCc
Confidence 65554433
No 175
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.61 E-value=4.1e-07 Score=97.31 Aligned_cols=68 Identities=15% Similarity=0.071 Sum_probs=53.2
Q ss_pred cCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEeec
Q 011079 236 YQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATF 303 (494)
Q Consensus 236 ~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SATl 303 (494)
.....|+++||..|..-+..+...+..++.||+||||++....-...+..+.+...+..-+.+|||.+
T Consensus 5 y~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP 72 (814)
T TIGR00596 5 YLEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNP 72 (814)
T ss_pred hhcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCC
Confidence 45678999999999876677778899999999999999876555555666666666666778888883
No 176
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.57 E-value=3.6e-07 Score=84.85 Aligned_cols=67 Identities=19% Similarity=0.300 Sum_probs=49.5
Q ss_pred CcHHHHHHHHHHhcCCc-EEEEccCCCchhHHhHHHHHHhh------hcCCCceEEEEEcCcHHHHHHHHHHHHH
Q 011079 143 PSPIQEESIPIALTGSD-ILARAKNGTGKTAAFCIPALEKI------DQDNNVIQVVILVPTRELALQTSQVCKE 210 (494)
Q Consensus 143 ~~~~Q~~~i~~~~~~~~-~ii~~~TGsGKT~~~~~~~l~~l------~~~~~~~~~lil~P~~~la~q~~~~~~~ 210 (494)
+++-|.+|+..++.... .+|.||+|+|||+...- ++..+ .....+.++|+++|+...+..+.+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLAS-IIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHH-HHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHH-HHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 67899999999999998 99999999999976443 33333 1234455899999999999888777666
No 177
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.56 E-value=5.1e-05 Score=77.16 Aligned_cols=105 Identities=15% Similarity=0.201 Sum_probs=72.2
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHcCC-------cEEEEccCCCHHHHHHHHHHhhc----CCccEEEEc--CcccccCC
Q 011079 356 QINQSIIFCNSVNRVELLAKKITELGY-------SCFYIHAKMLQDHRNRVFHDFRN----GACRNLVCT--DLFTRGID 422 (494)
Q Consensus 356 ~~~~~lVF~~~~~~~~~l~~~L~~~~~-------~~~~~~~~~~~~~r~~i~~~f~~----g~~~vlvaT--~~~~~Gid 422 (494)
-++-+++|+|+.+-...+.+.+.+.|+ +.+.+-..-+ -+.+++.|.. |.-.+|+|. .-+++|||
T Consensus 628 VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGIN 704 (821)
T KOG1133|consen 628 VPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGIN 704 (821)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccccc
Confidence 347899999999999999998887543 2333333322 3456666653 444566666 57899999
Q ss_pred CCC--CCEEEEcCCCCC--------------------------------HHHHHHHhccccCCCCcceEEEEecc
Q 011079 423 IQA--VNVVINFDFPKN--------------------------------SETYLHRVGRSGRFGHLGLAVNLITY 463 (494)
Q Consensus 423 i~~--v~~VI~~~~p~s--------------------------------~~~~~Qr~GRagR~g~~g~~~~l~~~ 463 (494)
+.| .+.||..++|.. +....|-+|||-|--+.-.++.|++.
T Consensus 705 F~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~ 779 (821)
T KOG1133|consen 705 FSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDK 779 (821)
T ss_pred cccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehh
Confidence 988 677887777651 11236999999997666667777764
No 178
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.44 E-value=1.2e-05 Score=83.55 Aligned_cols=73 Identities=16% Similarity=0.186 Sum_probs=56.1
Q ss_pred CCccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhccccCC--CCcceE-----------EEEecccchHHHHHH
Q 011079 406 GACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRF--GHLGLA-----------VNLITYEDRFNLYRI 472 (494)
Q Consensus 406 g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~--g~~g~~-----------~~l~~~~~~~~~~~l 472 (494)
..++.|++-.++-+|.|-|+|-.+.-+....|..+=.|.+||.-|- .+.|.- ..|++..+...+..|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 4578999999999999999999999999889999999999999882 233332 345556666666666
Q ss_pred HHHhCC
Q 011079 473 EQELGT 478 (494)
Q Consensus 473 ~~~~~~ 478 (494)
..+...
T Consensus 562 qkEI~~ 567 (985)
T COG3587 562 QKEIND 567 (985)
T ss_pred HHHHHH
Confidence 655543
No 179
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.42 E-value=2.3e-07 Score=82.71 Aligned_cols=147 Identities=18% Similarity=0.207 Sum_probs=73.6
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHH---HHHHHHh-ccC
Q 011079 140 FERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTS---QVCKELG-KHL 215 (494)
Q Consensus 140 ~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~---~~~~~~~-~~~ 215 (494)
+...+..|..++.+++...-+++.||.|||||+.++..+++.+.... -.+++|+-|..+....+- -.+.+.. ..+
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~-~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGE-YDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS--SEEEEEE-S--TT----SS---------TTT
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCC-CcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 34568899999999997777999999999999999999988887743 336777778764321110 0000000 000
Q ss_pred C---cEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCC
Q 011079 216 N---IQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPA 292 (494)
Q Consensus 216 ~---~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~ 292 (494)
. -....+.+..... .+.....|-+.+...+ ++. .+. -++||+|||..+ -...++.++.++..
T Consensus 81 ~p~~d~l~~~~~~~~~~----~~~~~~~Ie~~~~~~i-----RGr-t~~-~~~iIvDEaQN~----t~~~~k~ilTR~g~ 145 (205)
T PF02562_consen 81 RPIYDALEELFGKEKLE----ELIQNGKIEIEPLAFI-----RGR-TFD-NAFIIVDEAQNL----TPEELKMILTRIGE 145 (205)
T ss_dssp HHHHHHHTTTS-TTCHH----HHHHTTSEEEEEGGGG-----TT---B--SEEEEE-SGGG------HHHHHHHHTTB-T
T ss_pred HHHHHHHHHHhChHhHH----HHhhcCeEEEEehhhh-----cCc-ccc-ceEEEEecccCC----CHHHHHHHHcccCC
Confidence 0 0000000111111 1112344555544322 111 122 388999999976 35678889999988
Q ss_pred CCcEEEEEee
Q 011079 293 NRQILMFSAT 302 (494)
Q Consensus 293 ~~~~i~~SAT 302 (494)
+.++|++-=.
T Consensus 146 ~skii~~GD~ 155 (205)
T PF02562_consen 146 GSKIIITGDP 155 (205)
T ss_dssp T-EEEEEE--
T ss_pred CcEEEEecCc
Confidence 8987775544
No 180
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.39 E-value=3.8e-06 Score=78.39 Aligned_cols=161 Identities=20% Similarity=0.192 Sum_probs=104.4
Q ss_pred CCcHHHHHHHHHHhc----------CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011079 142 RPSPIQEESIPIALT----------GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL 211 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~----------~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (494)
.++..|.+++-.+.. ..-+++-..||.||--+..-.+++....+.. +.|.++.+..|-.+..+.++.+
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~--r~vwvS~s~dL~~Da~RDl~DI 114 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRK--RAVWVSVSNDLKYDAERDLRDI 114 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCC--ceEEEECChhhhhHHHHHHHHh
Confidence 467888888765542 2348899999999998877777777666543 6899999999999988899988
Q ss_pred hccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcC---Cccc--------cc-cceEEecccccccCCCc
Q 011079 212 GKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG---VCIL--------KD-CSMLVMDEADKLLSPEF 279 (494)
Q Consensus 212 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~---~~~l--------~~-~~~iViDEah~~~~~~~ 279 (494)
+.. .+.+..+..-.. . ....-...|+++|+..|....... ...+ .+ =.+||+||||.+.+..-
T Consensus 115 G~~-~i~v~~l~~~~~-~---~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~ 189 (303)
T PF13872_consen 115 GAD-NIPVHPLNKFKY-G---DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSS 189 (303)
T ss_pred CCC-cccceechhhcc-C---cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCc
Confidence 754 233322221100 0 001124569999999887754321 1111 11 25899999998765332
Q ss_pred --------HHHHHHHHHHCCCCCcEEEEEeecCcchHHH
Q 011079 280 --------QPSVEQLIRFLPANRQILMFSATFPVTVKDF 310 (494)
Q Consensus 280 --------~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~ 310 (494)
...+..+...+| +.+++.+|||--.+.+++
T Consensus 190 ~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgasep~Nm 227 (303)
T PF13872_consen 190 GSKKPSKTGIAVLELQNRLP-NARVVYASATGASEPRNM 227 (303)
T ss_pred cCccccHHHHHHHHHHHhCC-CCcEEEecccccCCCcee
Confidence 234555667775 455999999966554444
No 181
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.37 E-value=1.1e-06 Score=76.79 Aligned_cols=111 Identities=20% Similarity=0.237 Sum_probs=74.5
Q ss_pred HHHHhcCCCcEEEEecChhHHHHHHHHHHHcCC--cEEEEccCCCHHHHHHHHHHhhcCCccEEEEcC--cccccCCCCC
Q 011079 350 TLFSKLQINQSIIFCNSVNRVELLAKKITELGY--SCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD--LFTRGIDIQA 425 (494)
Q Consensus 350 ~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~--~~~~Gidi~~ 425 (494)
.++.. .++.+|||+++.+..+.+.+.+..... ....+.. .......+++.|..+.-.||+++. .+.+|||+++
T Consensus 3 ~l~~~-~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 3 ELISA-VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HHHHC-CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred HHHhc-CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 34443 448999999999999999999876531 1222222 256788899999999999999998 9999999997
Q ss_pred --CCEEEEcCCCCC------------------------------HHHHHHHhccccCCCCcceEEEEecc
Q 011079 426 --VNVVINFDFPKN------------------------------SETYLHRVGRSGRFGHLGLAVNLITY 463 (494)
Q Consensus 426 --v~~VI~~~~p~s------------------------------~~~~~Qr~GRagR~g~~g~~~~l~~~ 463 (494)
++.||..++|.. .....|.+||+-|....--++.+++.
T Consensus 80 ~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 80 DLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp ESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred chhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 778998888751 11226889999998665445555554
No 182
>PRK10536 hypothetical protein; Provisional
Probab=98.28 E-value=1.5e-05 Score=73.25 Aligned_cols=143 Identities=13% Similarity=0.152 Sum_probs=82.5
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHH-----------HHHHHH
Q 011079 139 GFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELA-----------LQTSQV 207 (494)
Q Consensus 139 ~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la-----------~q~~~~ 207 (494)
++...+..|...+.++.++.-+++.|++|||||+.+...+++.+.... -.+++|.-|+.... +.+.-+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~ 134 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD-VDRIIVTRPVLQADEDLGFLPGDIAEKFAPY 134 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC-eeEEEEeCCCCCchhhhCcCCCCHHHHHHHH
Confidence 355678889999998888777999999999999987777776664433 22445544765422 111222
Q ss_pred HHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHH
Q 011079 208 CKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLI 287 (494)
Q Consensus 208 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~ 287 (494)
+.-+...+.. +.+....... .. .....|-|.....+ +- . .+ +-++||+|||+.+. ...++.++
T Consensus 135 ~~pi~D~L~~----~~~~~~~~~~-~~-~~~~~Iei~~l~ym----RG-r-tl-~~~~vIvDEaqn~~----~~~~k~~l 197 (262)
T PRK10536 135 FRPVYDVLVR----RLGASFMQYC-LR-PEIGKVEIAPFAYM----RG-R-TF-ENAVVILDEAQNVT----AAQMKMFL 197 (262)
T ss_pred HHHHHHHHHH----HhChHHHHHH-HH-hccCcEEEecHHHh----cC-C-cc-cCCEEEEechhcCC----HHHHHHHH
Confidence 2222111110 0111111110 00 12234555543322 21 1 12 23899999999762 47788889
Q ss_pred HHCCCCCcEEEE
Q 011079 288 RFLPANRQILMF 299 (494)
Q Consensus 288 ~~~~~~~~~i~~ 299 (494)
.++..+.++|++
T Consensus 198 tR~g~~sk~v~~ 209 (262)
T PRK10536 198 TRLGENVTVIVN 209 (262)
T ss_pred hhcCCCCEEEEe
Confidence 999888886664
No 183
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.27 E-value=9.6e-06 Score=84.62 Aligned_cols=139 Identities=21% Similarity=0.280 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhc---CCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEE
Q 011079 145 PIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQ---DNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (494)
Q Consensus 145 ~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~---~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~ 221 (494)
+.|+.|+..++.++-++|.|++|+|||+... .++..+.. .....++++++||-..+..+.+........+...
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~-~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~--- 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVA-RLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA--- 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHH-HHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc---
Confidence 7899999999999999999999999999733 23333322 1112478899999888877666554432222110
Q ss_pred EECCCChHHHHHHhcCCCeEEEEchHHHHHhHhc------CCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCc
Q 011079 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKK------GVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQ 295 (494)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~------~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~ 295 (494)
.... ....+-..|-.+++..... .......+++||||||-.+ + ...+..++..++...+
T Consensus 224 -------~~~~----~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv-d---~~l~~~ll~al~~~~r 288 (586)
T TIGR01447 224 -------EALI----AALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV-D---LPLMAKLLKALPPNTK 288 (586)
T ss_pred -------hhhh----hccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC-C---HHHHHHHHHhcCCCCE
Confidence 0000 0111224555555443211 1122345899999999865 2 4567778888888888
Q ss_pred EEEEEee
Q 011079 296 ILMFSAT 302 (494)
Q Consensus 296 ~i~~SAT 302 (494)
+|++-=.
T Consensus 289 lIlvGD~ 295 (586)
T TIGR01447 289 LILLGDK 295 (586)
T ss_pred EEEECCh
Confidence 7765433
No 184
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.26 E-value=1.7e-05 Score=83.06 Aligned_cols=140 Identities=21% Similarity=0.249 Sum_probs=88.0
Q ss_pred cHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhc--CCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEE
Q 011079 144 SPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQ--DNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (494)
Q Consensus 144 ~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~--~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~ 221 (494)
.++|+.|+...+.++-++|.|++|+|||++... ++..+.+ .....++++++||...|..+.+.........+..
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~-ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~--- 229 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAK-LLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT--- 229 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH-HHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc---
Confidence 489999999999999999999999999987432 3333322 1223478888899998877776555433322210
Q ss_pred EECCCChHHHHHHhcCCCeEEEEchHHHHHhHhc------CCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCc
Q 011079 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKK------GVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQ 295 (494)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~------~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~ 295 (494)
.... .....-..|-.+|+..... ...+.-.+++|||||+-.+ -...+..+++.+++..+
T Consensus 230 --------~~~~---~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv----d~~lm~~ll~al~~~~r 294 (615)
T PRK10875 230 --------DEQK---KRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV----DLPMMARLIDALPPHAR 294 (615)
T ss_pred --------hhhh---hcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc----cHHHHHHHHHhcccCCE
Confidence 0000 0011123455555442211 1122335789999999865 25667788888988888
Q ss_pred EEEEEee
Q 011079 296 ILMFSAT 302 (494)
Q Consensus 296 ~i~~SAT 302 (494)
+|++-=.
T Consensus 295 lIlvGD~ 301 (615)
T PRK10875 295 VIFLGDR 301 (615)
T ss_pred EEEecch
Confidence 8876544
No 185
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.22 E-value=2e-05 Score=84.63 Aligned_cols=126 Identities=21% Similarity=0.292 Sum_probs=80.2
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEE
Q 011079 141 ERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVM 220 (494)
Q Consensus 141 ~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~ 220 (494)
..+++-|.+|+..+..++.++|.|++|+|||+. +..++..+...+....+++++||-..|..+.+. .+..
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~-l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~-------~g~~-- 391 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTI-TRAIIELAEELGGLLPVGLAAPTGRAAKRLGEV-------TGLT-- 391 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH-HHHHHHHHHHcCCCceEEEEeCchHHHHHHHHh-------cCCc--
Confidence 378999999999999888899999999999986 344555554433224677888998776533221 1211
Q ss_pred EEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhc-----CCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCc
Q 011079 221 VTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKK-----GVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQ 295 (494)
Q Consensus 221 ~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~-----~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~ 295 (494)
-.|..+++.+... ........++||+|||+.+. ...+..+++.++...+
T Consensus 392 ----------------------a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~~~~~~r 445 (720)
T TIGR01448 392 ----------------------ASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALSLLAALPDHAR 445 (720)
T ss_pred ----------------------cccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHHHHHhCCCCCE
Confidence 0122222221100 00112457899999999763 3455677778888888
Q ss_pred EEEEEee
Q 011079 296 ILMFSAT 302 (494)
Q Consensus 296 ~i~~SAT 302 (494)
+|++-=+
T Consensus 446 lilvGD~ 452 (720)
T TIGR01448 446 LLLVGDT 452 (720)
T ss_pred EEEECcc
Confidence 7776544
No 186
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.20 E-value=6.7e-06 Score=86.28 Aligned_cols=100 Identities=19% Similarity=0.254 Sum_probs=89.1
Q ss_pred CcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhcCC-cc-EEEEcCcccccCCCCCCCEEEEcCCC
Q 011079 358 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGA-CR-NLVCTDLFTRGIDIQAVNVVINFDFP 435 (494)
Q Consensus 358 ~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~g~-~~-vlvaT~~~~~Gidi~~v~~VI~~~~p 435 (494)
.+++||+.-...+..++..|...++....+.|.|+...|.+.+..|..+. .. .+++..+...|+++..+.+|+..|+-
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 38999999999999999999988999999999999999999999999543 22 36677899999999999999999999
Q ss_pred CCHHHHHHHhccccCCCCcceE
Q 011079 436 KNSETYLHRVGRSGRFGHLGLA 457 (494)
Q Consensus 436 ~s~~~~~Qr~GRagR~g~~g~~ 457 (494)
+++..--|.+-||.|-|+.-.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v 641 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPV 641 (674)
T ss_pred cChHHHHHHHHHHHHhccccee
Confidence 9999999999999998875444
No 187
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.19 E-value=3.1e-05 Score=69.74 Aligned_cols=145 Identities=27% Similarity=0.338 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhc---CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHH
Q 011079 127 LKRELLMGIFEKGFERPSPIQEESIPIALT---GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQ 203 (494)
Q Consensus 127 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~---~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q 203 (494)
.++.++-++.. ++ .+++.|.+....+.+ +.+.+...-+|.|||.+ +.|++..+..++.. -+.+++|. +|..|
T Consensus 10 ~P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~-LvrviVpk-~Ll~q 84 (229)
T PF12340_consen 10 YPDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSR-LVRVIVPK-ALLEQ 84 (229)
T ss_pred ChHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCc-EEEEEcCH-HHHHH
Confidence 33445444433 23 689999999988886 46799999999999998 67777776665543 66777774 68888
Q ss_pred HHHHHHHH-hccCCcEEEE--EECCCChH--------HHHHHhcCCCeEEEEchHHHHHhHhc-------CC--------
Q 011079 204 TSQVCKEL-GKHLNIQVMV--TTGGTSLK--------DDIMRLYQPVHLLVGTPGRILDLSKK-------GV-------- 257 (494)
Q Consensus 204 ~~~~~~~~-~~~~~~~~~~--~~g~~~~~--------~~~~~~~~~~~Ilv~T~~~l~~~~~~-------~~-------- 257 (494)
..+.+... +.-++-.+.. +....... ...........|+++||+.++.+... ..
T Consensus 85 ~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~ 164 (229)
T PF12340_consen 85 MRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELL 164 (229)
T ss_pred HHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 77766544 3333333322 22222221 11112224567999999987653111 10
Q ss_pred ---ccccccceEEecccccccC
Q 011079 258 ---CILKDCSMLVMDEADKLLS 276 (494)
Q Consensus 258 ---~~l~~~~~iViDEah~~~~ 276 (494)
..+.+...=|+||+|.++.
T Consensus 165 ~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 165 KIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHHHHhcCCeEeECchhccC
Confidence 1133445578999997654
No 188
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.17 E-value=8.3e-06 Score=80.57 Aligned_cols=108 Identities=15% Similarity=0.139 Sum_probs=64.3
Q ss_pred cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCC
Q 011079 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQP 238 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 238 (494)
.++|.|.+|||||+.++- ++..+.....+..++++|+...|...+...+..... . ..
T Consensus 3 v~~I~G~aGTGKTvla~~-l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~-----------~-----------~~ 59 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALN-LAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYN-----------P-----------KL 59 (352)
T ss_pred EEEEEecCCcCHHHHHHH-HHHHhhccccCCceEEEEecchHHHHHHHHHhhhcc-----------c-----------ch
Confidence 378999999999998443 333332223344789999999998766665554320 0 00
Q ss_pred CeEEEEchHHHHHhHhcCCccccccceEEecccccccCCC-------cHHHHHHHHHH
Q 011079 239 VHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE-------FQPSVEQLIRF 289 (494)
Q Consensus 239 ~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~-------~~~~~~~~~~~ 289 (494)
....+..+..+.............+++||+||||++.... ....+..+++.
T Consensus 60 ~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 60 KKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred hhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 1122333333333222122346789999999999987621 23555555554
No 189
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.12 E-value=7.8e-06 Score=81.92 Aligned_cols=63 Identities=17% Similarity=0.289 Sum_probs=52.4
Q ss_pred CCcHHHHHHHHHHhcCCc-EEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHH
Q 011079 142 RPSPIQEESIPIALTGSD-ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQV 207 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~-~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~ 207 (494)
.+.+-|..|+....+.++ .+|.||+|+|||......+.+.+.+.. ++||..||.+.+..+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k---~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKK---RVLVCAPSNVAVDNIVER 248 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCC---eEEEEcCchHHHHHHHHH
Confidence 577889999999999877 788999999999986666666665543 899999999998887774
No 190
>PF13245 AAA_19: Part of AAA domain
Probab=98.10 E-value=1.3e-05 Score=59.58 Aligned_cols=59 Identities=27% Similarity=0.366 Sum_probs=40.1
Q ss_pred HHHHHhcCCc-EEEEccCCCchhHHhHHHHHHhhhc-CCCceEEEEEcCcHHHHHHHHHHH
Q 011079 150 SIPIALTGSD-ILARAKNGTGKTAAFCIPALEKIDQ-DNNVIQVVILVPTRELALQTSQVC 208 (494)
Q Consensus 150 ~i~~~~~~~~-~ii~~~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~P~~~la~q~~~~~ 208 (494)
++...+.+.. ++|.|++|||||....-.+...+.. ...+.+++|++|++..+..+.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 3443333333 6679999999997755555555532 122558999999999998777665
No 191
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.00 E-value=3.2e-05 Score=78.05 Aligned_cols=76 Identities=17% Similarity=0.152 Sum_probs=59.3
Q ss_pred HHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHh
Q 011079 135 IFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELG 212 (494)
Q Consensus 135 l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~ 212 (494)
+...++.+++.-|..|+.+++...-.+|.||+|+|||.+..-.+++.... . ...+||++|+...+.|+++.+.+.+
T Consensus 403 ~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~-~-~~~VLvcApSNiAVDqLaeKIh~tg 478 (935)
T KOG1802|consen 403 FSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-H-AGPVLVCAPSNIAVDQLAEKIHKTG 478 (935)
T ss_pred hcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh-c-CCceEEEcccchhHHHHHHHHHhcC
Confidence 33446667899999999999999999999999999998755544444433 3 3379999999999888888766543
No 192
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=7.5e-05 Score=73.72 Aligned_cols=119 Identities=16% Similarity=0.114 Sum_probs=68.6
Q ss_pred CcEEEEccCCCchhHHhHHHHHHhhhcC-CCceEEEEEc--CcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHH
Q 011079 158 SDILARAKNGTGKTAAFCIPALEKIDQD-NNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMR 234 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~-~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 234 (494)
+.++++||||+|||++....+....... ..+.++.+++ +.|.-+.. .++.++..+++.+...
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~e---QL~~~a~~lgvpv~~~------------ 239 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKK---QIQTYGDIMGIPVKAI------------ 239 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHH---HHHHHhhcCCcceEee------------
Confidence 4588999999999998654443332221 1233555555 65666633 3455555455544221
Q ss_pred hcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCC-cHHHHHHHHHHCCCC-CcEEEEEeecC
Q 011079 235 LYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE-FQPSVEQLIRFLPAN-RQILMFSATFP 304 (494)
Q Consensus 235 ~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~-~~~~~~~~~~~~~~~-~~~i~~SATl~ 304 (494)
.++..+...+.. +.++++|+||++.++.... ....+..++.....+ ..++.+|||..
T Consensus 240 ---------~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~ 298 (388)
T PRK12723 240 ---------ESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK 298 (388)
T ss_pred ---------CcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC
Confidence 123334333332 4678999999999875322 223455555555433 46788999975
No 193
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.91 E-value=8.8e-05 Score=66.46 Aligned_cols=129 Identities=18% Similarity=0.153 Sum_probs=73.2
Q ss_pred EEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcC
Q 011079 160 ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQ 237 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 237 (494)
++++||||+|||+.....+...... + .++.++| ..|.-+ .+.++.+++.+++.+..........+
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~-~--~~v~lis~D~~R~ga---~eQL~~~a~~l~vp~~~~~~~~~~~~------- 70 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK-G--KKVALISADTYRIGA---VEQLKTYAEILGVPFYVARTESDPAE------- 70 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT-T----EEEEEESTSSTHH---HHHHHHHHHHHTEEEEESSTTSCHHH-------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc-c--ccceeecCCCCCccH---HHHHHHHHHHhccccchhhcchhhHH-------
Confidence 7889999999999866555544444 2 2455555 556555 44455555555555543221111111
Q ss_pred CCeEEEEchHHHHHhHhcCCccccccceEEecccccccC-CCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHh
Q 011079 238 PVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS-PEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDK 313 (494)
Q Consensus 238 ~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~-~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~ 313 (494)
.+.+.+.. ...+++++|+||-+-+... ......+..++....+..-.+.+|||...+..+....
T Consensus 71 ----------~~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~ 135 (196)
T PF00448_consen 71 ----------IAREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALA 135 (196)
T ss_dssp ----------HHHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHH
T ss_pred ----------HHHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHH
Confidence 11112221 1235689999999986432 2345667777777766667889999987554444333
No 194
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.91 E-value=0.0001 Score=78.12 Aligned_cols=67 Identities=18% Similarity=0.219 Sum_probs=51.8
Q ss_pred CCCcHHHHHHHHHHhcC-CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHH
Q 011079 141 ERPSPIQEESIPIALTG-SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKE 210 (494)
Q Consensus 141 ~~~~~~Q~~~i~~~~~~-~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~ 210 (494)
..+++.|..|+..++.. ..++|.||+|+|||....-.+.+.+.. + .++|+++||...+..+.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~-g--~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR-G--LRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc-C--CCEEEEcCcHHHHHHHHHHHHh
Confidence 35789999999999887 458899999999998754444444332 2 3899999999998888776654
No 195
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.90 E-value=0.0002 Score=78.55 Aligned_cols=123 Identities=20% Similarity=0.131 Sum_probs=76.6
Q ss_pred CCcHHHHHHHHHHhcCCc-EEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEE
Q 011079 142 RPSPIQEESIPIALTGSD-ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVM 220 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~-~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~ 220 (494)
.+++-|.+++..++.+++ +++.|..|+|||+. +..+...+... +.+++.++||-..+..+. ...++..
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~~--G~~V~~~ApTGkAA~~L~-------e~tGi~a- 414 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEAA--GYEVRGAALSGIAAENLE-------GGSGIAS- 414 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHHc--CCeEEEecCcHHHHHHHh-------hccCcch-
Confidence 689999999999998765 78999999999986 44455544433 347888899976653332 1222210
Q ss_pred EEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHC-CCCCcEEEE
Q 011079 221 VTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFL-PANRQILMF 299 (494)
Q Consensus 221 ~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 299 (494)
.|..+|+.-...+...+...++|||||+-.+.. ..+..++... +...++|++
T Consensus 415 -----------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~----~~m~~LL~~a~~~garvVLV 467 (988)
T PRK13889 415 -----------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT----RQLERVLSHAADAGAKVVLV 467 (988)
T ss_pred -----------------------hhHHHHHhhhcccccccccCcEEEEECcccCCH----HHHHHHHHhhhhCCCEEEEE
Confidence 122233221222233466789999999996633 3444555433 446666665
Q ss_pred Eee
Q 011079 300 SAT 302 (494)
Q Consensus 300 SAT 302 (494)
-=+
T Consensus 468 GD~ 470 (988)
T PRK13889 468 GDP 470 (988)
T ss_pred CCH
Confidence 544
No 196
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.84 E-value=0.00031 Score=75.87 Aligned_cols=121 Identities=20% Similarity=0.165 Sum_probs=73.8
Q ss_pred CCcHHHHHHHHHHhcC-CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEE
Q 011079 142 RPSPIQEESIPIALTG-SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVM 220 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~-~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~ 220 (494)
.+++-|.+|+..++.+ +-++|.|++|+|||+. +-.+...+... +.++++++||-..+..+.+ ..++..
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~~~~~~--g~~V~~~ApTg~Aa~~L~~-------~~g~~a- 420 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREAWEAA--GYRVIGAALSGKAAEGLQA-------ESGIES- 420 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHHHHHhC--CCeEEEEeCcHHHHHHHHh-------ccCCce-
Confidence 6899999999999875 4589999999999986 34444444433 3478888999766533322 222211
Q ss_pred EEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHH-CCCCCcEEEE
Q 011079 221 VTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRF-LPANRQILMF 299 (494)
Q Consensus 221 ~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~-~~~~~~~i~~ 299 (494)
.|-.+++..+......+...++|||||+-.+... .+..++.. .....++|++
T Consensus 421 -----------------------~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~----~~~~Ll~~~~~~~~kliLV 473 (744)
T TIGR02768 421 -----------------------RTLASLEYAWANGRDLLSDKDVLVIDEAGMVGSR----QMARVLKEAEEAGAKVVLV 473 (744)
T ss_pred -----------------------eeHHHHHhhhccCcccCCCCcEEEEECcccCCHH----HHHHHHHHHHhcCCEEEEE
Confidence 1222222112222334667899999999976432 33444442 2345666665
Q ss_pred E
Q 011079 300 S 300 (494)
Q Consensus 300 S 300 (494)
-
T Consensus 474 G 474 (744)
T TIGR02768 474 G 474 (744)
T ss_pred C
Confidence 4
No 197
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.80 E-value=0.00027 Score=67.15 Aligned_cols=144 Identities=15% Similarity=0.210 Sum_probs=86.7
Q ss_pred CCCCCCcHHHHHHHHHHhcCCc--EEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccC
Q 011079 138 KGFERPSPIQEESIPIALTGSD--ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHL 215 (494)
Q Consensus 138 ~~~~~~~~~Q~~~i~~~~~~~~--~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~ 215 (494)
.|+...+..|.-|+..++...- +.+.|..|||||+.++.+.++.....+.-.+++|.=|+...-.
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~------------- 290 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGE------------- 290 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCccc-------------
Confidence 4777888999999999998754 7789999999999988888877766554445666557754431
Q ss_pred CcEEEEEECCCChH--HHHHHhcCCCe----EEEEchHHHHHhHhcCCcccccc----------ceEEecccccccCCCc
Q 011079 216 NIQVMVTTGGTSLK--DDIMRLYQPVH----LLVGTPGRILDLSKKGVCILKDC----------SMLVMDEADKLLSPEF 279 (494)
Q Consensus 216 ~~~~~~~~g~~~~~--~~~~~~~~~~~----Ilv~T~~~l~~~~~~~~~~l~~~----------~~iViDEah~~~~~~~ 279 (494)
.++.+-|....+ .+...+...-. .-=|+.+.+...+.+....+..+ .+||||||..+ -
T Consensus 291 --dIGfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL----T 364 (436)
T COG1875 291 --DIGFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL----T 364 (436)
T ss_pred --ccCcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc----C
Confidence 122222221111 00000000000 00112344444444333222222 57999999976 3
Q ss_pred HHHHHHHHHHCCCCCcEEEEE
Q 011079 280 QPSVEQLIRFLPANRQILMFS 300 (494)
Q Consensus 280 ~~~~~~~~~~~~~~~~~i~~S 300 (494)
...++.++.+..+..+++++.
T Consensus 365 pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 365 PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred HHHHHHHHHhccCCCEEEEcC
Confidence 567888999998888877643
No 198
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.69 E-value=0.00066 Score=75.08 Aligned_cols=137 Identities=19% Similarity=0.162 Sum_probs=82.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHH
Q 011079 127 LKRELLMGIFEKGFERPSPIQEESIPIALTG-SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTS 205 (494)
Q Consensus 127 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~ 205 (494)
+++..+......++ .+++-|.+++..+..+ +-++|.|..|+|||+. +-++...+...+ .+++.++||-..+..+.
T Consensus 367 v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~~G--~~V~g~ApTgkAA~~L~ 442 (1102)
T PRK13826 367 VREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEAAG--YRVVGGALAGKAAEGLE 442 (1102)
T ss_pred CCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHHcC--CeEEEEcCcHHHHHHHH
Confidence 44444554444433 6899999999988654 4589999999999987 444555544433 47888889976654332
Q ss_pred HHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHH
Q 011079 206 QVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQ 285 (494)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~ 285 (494)
...|+.. .|-.+++.....+...+..-++|||||+..+. ...+..
T Consensus 443 -------e~~Gi~a------------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~----~~~m~~ 487 (1102)
T PRK13826 443 -------KEAGIQS------------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGMVA----SRQMAL 487 (1102)
T ss_pred -------HhhCCCe------------------------eeHHHHHhhhccCccCCCCCcEEEEECcccCC----HHHHHH
Confidence 2223221 12222211111222346677899999999653 334455
Q ss_pred HHHHCC-CCCcEEEEEee
Q 011079 286 LIRFLP-ANRQILMFSAT 302 (494)
Q Consensus 286 ~~~~~~-~~~~~i~~SAT 302 (494)
+++..+ ...++|++-=+
T Consensus 488 Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 488 FVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHhcCCEEEEECCH
Confidence 555553 45666666544
No 199
>PRK14974 cell division protein FtsY; Provisional
Probab=97.68 E-value=0.0007 Score=65.66 Aligned_cols=131 Identities=18% Similarity=0.217 Sum_probs=73.6
Q ss_pred cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc--CcHHHH-HHHHHHHHHHhccCCcEEEEEECCCChHHHHHHh
Q 011079 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELA-LQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL 235 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la-~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 235 (494)
-+++.|++|+|||+.....+ ..+...+ .+++++. +.|.-+ .|+...+. .+++.+.....+.....
T Consensus 142 vi~~~G~~GvGKTTtiakLA-~~l~~~g--~~V~li~~Dt~R~~a~eqL~~~a~----~lgv~v~~~~~g~dp~~----- 209 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLA-YYLKKNG--FSVVIAAGDTFRAGAIEQLEEHAE----RLGVKVIKHKYGADPAA----- 209 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHH-HHHHHcC--CeEEEecCCcCcHHHHHHHHHHHH----HcCCceecccCCCCHHH-----
Confidence 37889999999999744433 3333332 2555554 233333 34433333 34444332111111110
Q ss_pred cCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccC-CCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhh
Q 011079 236 YQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS-PEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKY 314 (494)
Q Consensus 236 ~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~-~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~ 314 (494)
.+.+.+.. .....+++|++|.+.++.. ..+...++.+.+...++..+++++||...+..+....|
T Consensus 210 ------------v~~~ai~~--~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f 275 (336)
T PRK14974 210 ------------VAYDAIEH--AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREF 275 (336)
T ss_pred ------------HHHHHHHH--HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHH
Confidence 01111111 0124578999999998753 34566777777777778888999999876666655555
Q ss_pred c
Q 011079 315 L 315 (494)
Q Consensus 315 ~ 315 (494)
.
T Consensus 276 ~ 276 (336)
T PRK14974 276 N 276 (336)
T ss_pred H
Confidence 4
No 200
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.65 E-value=0.00028 Score=73.91 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=30.7
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEccCCCchhHHhHHHHHHh
Q 011079 142 RPSPIQEESIPIAL----TGSDILARAKNGTGKTAAFCIPALEK 181 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~----~~~~~ii~~~TGsGKT~~~~~~~l~~ 181 (494)
+|++.|...+..++ ...+.++..|||+|||++.+-..|.+
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW 64 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAW 64 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHH
Confidence 67899987777665 45679999999999998765555444
No 201
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.62 E-value=0.00016 Score=60.34 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCchhHHhHHHH
Q 011079 157 GSDILARAKNGTGKTAAFCIPA 178 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~ 178 (494)
++.++|.|++|+|||......+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~ 25 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLA 25 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHH
Confidence 3458999999999999744433
No 202
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.00053 Score=67.23 Aligned_cols=129 Identities=17% Similarity=0.166 Sum_probs=66.1
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHH
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMR 234 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 234 (494)
+..++++||||+|||+.....+.......+.. ++.+++ +.|.-+ .+.++.++..+++.+...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~-~V~lit~D~~R~ga---~EqL~~~a~~~gv~~~~~------------ 200 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGAS-KVALLTTDSYRIGG---HEQLRIFGKILGVPVHAV------------ 200 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCC-eEEEEecccccccH---HHHHHHHHHHcCCceEec------------
Confidence 55689999999999998655444433332222 344443 223333 233444444444443332
Q ss_pred hcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCC-cHHHHHHHHHHCCCCCcEEEEEeecCcch-HHHHH
Q 011079 235 LYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE-FQPSVEQLIRFLPANRQILMFSATFPVTV-KDFKD 312 (494)
Q Consensus 235 ~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~-~~~~~~~~~~~~~~~~~~i~~SATl~~~~-~~~~~ 312 (494)
.+++.+...+. .+.+.++|+||++-+..... ....+..+.........++++|||...+. .+...
T Consensus 201 ---------~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 201 ---------KDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred ---------CCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 22222322222 25567999999997643222 22233333222223345788999975443 33444
Q ss_pred hh
Q 011079 313 KY 314 (494)
Q Consensus 313 ~~ 314 (494)
.|
T Consensus 268 ~f 269 (374)
T PRK14722 268 AY 269 (374)
T ss_pred HH
Confidence 44
No 203
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.58 E-value=5.7e-06 Score=85.83 Aligned_cols=76 Identities=22% Similarity=0.279 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHcCCcEEEEccCCCHHHHHHHHHHhhc-C--CccEEEEcCccc
Q 011079 344 KVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN-G--ACRNLVCTDLFT 418 (494)
Q Consensus 344 k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~i~~~f~~-g--~~~vlvaT~~~~ 418 (494)
|...|..++... ...+++||..-....+.+-+.+...+ ....+.|......|...+++|.. | ....|++|.+.+
T Consensus 616 k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g 694 (696)
T KOG0383|consen 616 KLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGG 694 (696)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeeccccc
Confidence 555666666554 45699999999999999999998888 88889999999999999999983 3 456788888766
Q ss_pred cc
Q 011079 419 RG 420 (494)
Q Consensus 419 ~G 420 (494)
.|
T Consensus 695 ~g 696 (696)
T KOG0383|consen 695 LG 696 (696)
T ss_pred CC
Confidence 54
No 204
>PRK04296 thymidine kinase; Provisional
Probab=97.57 E-value=0.00025 Score=63.38 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=24.3
Q ss_pred cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcC
Q 011079 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVP 196 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 196 (494)
-.++.|++|+|||+..+..+...... +.+++|+-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~---g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEER---GMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHc---CCeEEEEec
Confidence 36889999999999865554444332 337787766
No 205
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.51 E-value=0.00096 Score=65.03 Aligned_cols=130 Identities=19% Similarity=0.251 Sum_probs=76.3
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc-CcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHh
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV-PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL 235 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~-P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 235 (494)
++.+.++||||-|||+.....+..+....++...+||.+ ..|.=| .+.++.++.-+++.+.+..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA---~EQLk~Ya~im~vp~~vv~------------ 267 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGA---VEQLKTYADIMGVPLEVVY------------ 267 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhH---HHHHHHHHHHhCCceEEec------------
Confidence 566889999999999986554444443334443455555 445555 4455556555565554433
Q ss_pred cCCCeEEEEchHHHHHhHhcCCccccccceEEecccccc-cCCCcHHHHHHHHHHCCCCCcEEEEEeecCc-chHHHHHh
Q 011079 236 YQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKL-LSPEFQPSVEQLIRFLPANRQILMFSATFPV-TVKDFKDK 313 (494)
Q Consensus 236 ~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SATl~~-~~~~~~~~ 313 (494)
+|.-|...+. .+.++++|.+|=+-+- .+......++.++....+..-.+.+|||... ++.+....
T Consensus 268 ---------~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~ 334 (407)
T COG1419 268 ---------SPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQ 334 (407)
T ss_pred ---------CHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHH
Confidence 3333433332 2667788888877652 2233445566666666555556889999642 34444444
Q ss_pred h
Q 011079 314 Y 314 (494)
Q Consensus 314 ~ 314 (494)
|
T Consensus 335 f 335 (407)
T COG1419 335 F 335 (407)
T ss_pred h
Confidence 4
No 206
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.50 E-value=0.00092 Score=56.50 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchhHH
Q 011079 157 GSDILARAKNGTGKTAA 173 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~ 173 (494)
++.+++.|++|+|||+.
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56799999999999975
No 207
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.47 E-value=0.00071 Score=71.66 Aligned_cols=126 Identities=17% Similarity=0.178 Sum_probs=79.3
Q ss_pred CCCCcHHHHHHHHHHhcCCc-EEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcE
Q 011079 140 FERPSPIQEESIPIALTGSD-ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQ 218 (494)
Q Consensus 140 ~~~~~~~Q~~~i~~~~~~~~-~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~ 218 (494)
+..++.-|++|+-.++.-+| .+|.|=+|+|||+.... ++..+...+ .+||+.+=|-..+..+.-.++.+ ++.
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~-LIkiL~~~g--kkVLLtsyThsAVDNILiKL~~~----~i~ 739 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISL-LIKILVALG--KKVLLTSYTHSAVDNILIKLKGF----GIY 739 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHH-HHHHHHHcC--CeEEEEehhhHHHHHHHHHHhcc----Ccc
Confidence 34688899999999998877 88899999999987443 333333222 37888887766665554444433 233
Q ss_pred EEEEECCCChHH-----------------HHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccC
Q 011079 219 VMVTTGGTSLKD-----------------DIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS 276 (494)
Q Consensus 219 ~~~~~g~~~~~~-----------------~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~ 276 (494)
+.-+-....... +.....+.+.|+.||---+.+.+. ....|++.|+|||-.+..
T Consensus 740 ~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf----~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 740 ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF----VNRQFDYCIIDEASQILL 810 (1100)
T ss_pred eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh----hccccCEEEEcccccccc
Confidence 222222222222 223444678888888644433222 356699999999998754
No 208
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.46 E-value=0.0012 Score=55.67 Aligned_cols=77 Identities=18% Similarity=0.162 Sum_probs=53.1
Q ss_pred EccCCCHHHHHHHHHHhhcCC-ccEEEEcCcccccCCCCC--CCEEEEcCCCCC--------------------------
Q 011079 387 IHAKMLQDHRNRVFHDFRNGA-CRNLVCTDLFTRGIDIQA--VNVVINFDFPKN-------------------------- 437 (494)
Q Consensus 387 ~~~~~~~~~r~~i~~~f~~g~-~~vlvaT~~~~~Gidi~~--v~~VI~~~~p~s-------------------------- 437 (494)
+.-.....+...+++.|.... ..||++|..+.+|||+++ ++.||..++|..
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~ 106 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFV 106 (141)
T ss_pred EEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHH
Confidence 333344445788888898654 379999988999999998 567887776641
Q ss_pred -----HHHHHHHhccccCCCCcceEEEEecc
Q 011079 438 -----SETYLHRVGRSGRFGHLGLAVNLITY 463 (494)
Q Consensus 438 -----~~~~~Qr~GRagR~g~~g~~~~l~~~ 463 (494)
.....|.+||+-|....-.++.+++.
T Consensus 107 ~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D~ 137 (141)
T smart00492 107 SLPDAMRTLAQCVGRLIRGANDYGVVVIADK 137 (141)
T ss_pred HHHHHHHHHHHHhCccccCcCceEEEEEEec
Confidence 12236888999997654335555543
No 209
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.44 E-value=0.00042 Score=58.14 Aligned_cols=41 Identities=22% Similarity=0.195 Sum_probs=24.7
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHH
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTREL 200 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~l 200 (494)
+..+++.||+|+|||+.... ++..+.... ..++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~-l~~~~~~~~--~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA-LARELGPPG--GGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH-HHhccCCCC--CCEEEECCEEcc
Confidence 35689999999999997332 222222221 246666655433
No 210
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.43 E-value=0.00037 Score=67.71 Aligned_cols=122 Identities=16% Similarity=0.115 Sum_probs=72.7
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcC-CCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEE
Q 011079 143 PSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD-NNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (494)
Q Consensus 143 ~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~-~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~ 221 (494)
+++-|.+++.. ....++|.|..|||||++.+.-+...+... ....++|++++|+..+..+.+.+............
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~~~- 77 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQESS- 77 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHCCT-
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCccccccc-
Confidence 46778888888 667799999999999998665555555444 34558999999999999988877775443211000
Q ss_pred EECCCChHHHHHHhcCCCeEEEEchHHHHHh-HhcCCccc-cccceEEecccc
Q 011079 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDL-SKKGVCIL-KDCSMLVMDEAD 272 (494)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~-~~~~~~~l-~~~~~iViDEah 272 (494)
...... ........+.|+|.+.+... +....... -.-.+-++|+..
T Consensus 78 --~~~~~~---~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 78 --DNERLR---RQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp --T-HHHH---HHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred --cccccc---ccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 000011 11112346788998887653 33211111 123456666665
No 211
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=97.43 E-value=0.00066 Score=70.16 Aligned_cols=156 Identities=19% Similarity=0.221 Sum_probs=90.6
Q ss_pred CCcHHHHHHHHHHhc--------CCc--EEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011079 142 RPSPIQEESIPIALT--------GSD--ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL 211 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~--------~~~--~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (494)
.+...|.+++-.+.. |.. ++|-...|-||-....-.|++-..++. .++|.+.-+..|--+..+.+..+
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGR--KrAlW~SVSsDLKfDAERDL~Di 341 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGR--KRALWFSVSSDLKFDAERDLRDI 341 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhccc--ceeEEEEeccccccchhhchhhc
Confidence 567888888876653 222 666666677776443333444444433 37899998888876666777766
Q ss_pred hccCCcEEEEEECC--CChHHHHHHhcCCCeEEEEchHHHHHhHhc-CCcc-----------cccc-ceEEecccccccC
Q 011079 212 GKHLNIQVMVTTGG--TSLKDDIMRLYQPVHLLVGTPGRILDLSKK-GVCI-----------LKDC-SMLVMDEADKLLS 276 (494)
Q Consensus 212 ~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~-~~~~-----------l~~~-~~iViDEah~~~~ 276 (494)
+. .++.|..+..- .++..+. .-.-.-.++++|+..|.-.... .... -.+| .+||+||||.-.+
T Consensus 342 gA-~~I~V~alnK~KYakIss~e-n~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAKN 419 (1300)
T KOG1513|consen 342 GA-TGIAVHALNKFKYAKISSKE-NTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAKN 419 (1300)
T ss_pred CC-CCccceehhhcccccccccc-cCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhcc
Confidence 53 34555443211 1111000 0011346999999887653331 1000 1112 5899999997432
Q ss_pred ---------CCcHHHHHHHHHHCCCCCcEEEEEee
Q 011079 277 ---------PEFQPSVEQLIRFLPANRQILMFSAT 302 (494)
Q Consensus 277 ---------~~~~~~~~~~~~~~~~~~~~i~~SAT 302 (494)
.-.+..+..+...+| +.+++..|||
T Consensus 420 L~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASAT 453 (1300)
T KOG1513|consen 420 LVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASAT 453 (1300)
T ss_pred cccccCCCcCcccHhHHHHHHhCC-CceEEEeecc
Confidence 113556777777885 6678999999
No 212
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.42 E-value=0.0019 Score=63.14 Aligned_cols=130 Identities=15% Similarity=0.108 Sum_probs=68.7
Q ss_pred CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEE-Ec-CcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHh
Q 011079 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVI-LV-PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL 235 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~li-l~-P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 235 (494)
+.+.++||||+|||+.....+... ...+ .++.+ -+ |.|.-+ .+.++.++...++.+..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L-~~~G--kkVglI~aDt~RiaA---vEQLk~yae~lgipv~v-------------- 301 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQF-HGKK--KTVGFITTDHSRIGT---VQQLQDYVKTIGFEVIA-------------- 301 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH-HHcC--CcEEEEecCCcchHH---HHHHHHHhhhcCCcEEe--------------
Confidence 458899999999999755544433 2222 24444 44 555333 22233333333333322
Q ss_pred cCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCC-CcHHHHHHHHHHCCCCCcEEEEEeecCc-chHHHHHh
Q 011079 236 YQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSP-EFQPSVEQLIRFLPANRQILMFSATFPV-TVKDFKDK 313 (494)
Q Consensus 236 ~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~-~~~~~~~~~~~~~~~~~~~i~~SATl~~-~~~~~~~~ 313 (494)
..++..+.+.+..... ..++++|+||-+=+.... .....+..++....+..-++.+|||... +..+....
T Consensus 302 -------~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~ 373 (436)
T PRK11889 302 -------VRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITN 373 (436)
T ss_pred -------cCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHH
Confidence 2245555444432110 125899999998775432 2233445555544445556779998653 44555555
Q ss_pred hc
Q 011079 314 YL 315 (494)
Q Consensus 314 ~~ 315 (494)
|-
T Consensus 374 F~ 375 (436)
T PRK11889 374 FK 375 (436)
T ss_pred hc
Confidence 43
No 213
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.37 E-value=0.0011 Score=55.87 Aligned_cols=94 Identities=16% Similarity=0.133 Sum_probs=58.9
Q ss_pred HHHHHHHHHHcCC---cEEEEccCCCHHHHHHHHHHhhcCCc---cEEEEcCc--ccccCCCCC--CCEEEEcCCCCC--
Q 011079 370 VELLAKKITELGY---SCFYIHAKMLQDHRNRVFHDFRNGAC---RNLVCTDL--FTRGIDIQA--VNVVINFDFPKN-- 437 (494)
Q Consensus 370 ~~~l~~~L~~~~~---~~~~~~~~~~~~~r~~i~~~f~~g~~---~vlvaT~~--~~~Gidi~~--v~~VI~~~~p~s-- 437 (494)
.+.+++.+.+.+. ....+.-.....+...+++.|..... .||+++.- +.+|||+++ ++.||..++|..
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~ 83 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNP 83 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCC
Confidence 4555566655432 12222222222344678888886543 68988876 999999998 567888777641
Q ss_pred -----------------------------HHHHHHHhccccCCCCcceEEEEecc
Q 011079 438 -----------------------------SETYLHRVGRSGRFGHLGLAVNLITY 463 (494)
Q Consensus 438 -----------------------------~~~~~Qr~GRagR~g~~g~~~~l~~~ 463 (494)
.....|.+||+-|....--+++|++.
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 84 DSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEec
Confidence 11236899999998655445565553
No 214
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.36 E-value=0.0015 Score=65.87 Aligned_cols=151 Identities=18% Similarity=0.247 Sum_probs=71.8
Q ss_pred EEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHH-HHHhccCCcEEEEEECCCChH----HHHHHhc
Q 011079 162 ARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVC-KELGKHLNIQVMVTTGGTSLK----DDIMRLY 236 (494)
Q Consensus 162 i~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~-~~~~~~~~~~~~~~~g~~~~~----~~~~~~~ 236 (494)
..++||||||++..-.||....+ +.. ..|+.|......+.....+ ..+....-..-....++..+. .......
T Consensus 2 f~matgsgkt~~ma~lil~~y~k-gyr-~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehn 79 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK-GYR-NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHN 79 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh-chh-hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccC
Confidence 35789999999866666665544 333 3455554433332221111 000000000000011111110 0000123
Q ss_pred CCCeEEEEchHHHHHhHhcC---Cc---cccccce-EEecccccccCCC-------------cHHHHHHHHHHCCCCCcE
Q 011079 237 QPVHLLVGTPGRILDLSKKG---VC---ILKDCSM-LVMDEADKLLSPE-------------FQPSVEQLIRFLPANRQI 296 (494)
Q Consensus 237 ~~~~Ilv~T~~~l~~~~~~~---~~---~l~~~~~-iViDEah~~~~~~-------------~~~~~~~~~~~~~~~~~~ 296 (494)
....|+++|.+.|...+.+. .. ++.+..+ ++-||||++.... +...+...++ -.++--+
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~-~nkd~~~ 158 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALE-QNKDNLL 158 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHh-cCCCcee
Confidence 46789999999886644332 11 2444444 5679999975311 1122221222 2334456
Q ss_pred EEEEeecCcchHHHHHhhcC
Q 011079 297 LMFSATFPVTVKDFKDKYLQ 316 (494)
Q Consensus 297 i~~SATl~~~~~~~~~~~~~ 316 (494)
+.+|||+| .-+....+|-.
T Consensus 159 lef~at~~-k~k~v~~ky~d 177 (812)
T COG3421 159 LEFSATIP-KEKSVEDKYED 177 (812)
T ss_pred ehhhhcCC-ccccHHHHhcc
Confidence 78999988 44555555543
No 215
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.31 E-value=0.016 Score=69.11 Aligned_cols=236 Identities=16% Similarity=0.182 Sum_probs=121.5
Q ss_pred CCcHHHHHHHHHHhcCC--cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEE
Q 011079 142 RPSPIQEESIPIALTGS--DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQV 219 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~--~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~ 219 (494)
.+++-|.+++..++... -.+|.|+.|+|||+. +..++..+... +.++++++|+...+..+.+.....+
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~~--G~~V~~lAPTgrAA~~L~e~~g~~A------- 498 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASEQ--GYEIQIITAGSLSAQELRQKIPRLA------- 498 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHhcchh-------
Confidence 57889999999998764 489999999999987 44455554443 3478899999876655443221110
Q ss_pred EEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHC-CCCCcEEE
Q 011079 220 MVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFL-PANRQILM 298 (494)
Q Consensus 220 ~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~-~~~~~~i~ 298 (494)
.........+... .-..|...++ .. ...+..-++||||||-.+. ...+..++... +.+.++|+
T Consensus 499 ------~Ti~~~l~~l~~~--~~~~tv~~fl---~~-~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~garvVl 562 (1960)
T TIGR02760 499 ------STFITWVKNLFND--DQDHTVQGLL---DK-SSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHNSKLIL 562 (1960)
T ss_pred ------hhHHHHHHhhccc--ccchhHHHhh---cc-cCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcCCEEEE
Confidence 1111111111111 1122322332 22 2235678999999999763 33455566544 45778887
Q ss_pred EEee--cCc----chHHHHHhhcCCCeEEEecccccccceeEEEEeehhhhHHHHHHHHHHhc--CCCcEEEEecChhHH
Q 011079 299 FSAT--FPV----TVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKL--QINQSIIFCNSVNRV 370 (494)
Q Consensus 299 ~SAT--l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~ 370 (494)
+-=+ ++. .+...+... +-+. +.+.......... .....+...+...+..-+... ....++|+.++.++.
T Consensus 563 vGD~~QL~sV~aG~~f~~L~~~-gv~t-~~l~~i~rq~~~v-~i~~~~~~~r~~~ia~~y~~L~~~r~~tliv~~t~~dr 639 (1960)
T TIGR02760 563 LNDSAQRQGMSAGSAIDLLKEG-GVTT-YAWVDTKQQKASV-EISEAVDKLRVDYIASAWLDLTPDRQNSQVLATTHREQ 639 (1960)
T ss_pred EcChhhcCccccchHHHHHHHC-CCcE-EEeecccccCcce-eeeccCchHHHHHHHHHHHhcccccCceEEEcCCcHHH
Confidence 7655 221 233333321 1111 1111111111110 111112222333333333232 223589999998888
Q ss_pred HHHHHHHHHc----C------CcEEEEc-cCCCHHHHHHHHHHhhcCC
Q 011079 371 ELLAKKITEL----G------YSCFYIH-AKMLQDHRNRVFHDFRNGA 407 (494)
Q Consensus 371 ~~l~~~L~~~----~------~~~~~~~-~~~~~~~r~~i~~~f~~g~ 407 (494)
..|...++.. | +....+. ..++..++. ....|+.|.
T Consensus 640 ~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r-~~~~Yr~Gd 686 (1960)
T TIGR02760 640 QDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRR-NAAHYKQGM 686 (1960)
T ss_pred HHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHh-hHhhcCCCC
Confidence 8887776542 2 2223332 245565555 336666654
No 216
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.31 E-value=0.00084 Score=66.57 Aligned_cols=59 Identities=17% Similarity=0.208 Sum_probs=43.1
Q ss_pred CcHHHHHHHHHH------hcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHH
Q 011079 143 PSPIQEESIPIA------LTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQT 204 (494)
Q Consensus 143 ~~~~Q~~~i~~~------~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~ 204 (494)
+++-|+.++..+ ..+..+++.|+-|+|||+. +-.+...+.. .+..+++++||-..|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l-~~~i~~~~~~--~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL-IKAIIDYLRS--RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH-HHHHHHHhcc--ccceEEEecchHHHHHhc
Confidence 567888888887 5667799999999999986 3334444433 234788899998777554
No 217
>PRK12377 putative replication protein; Provisional
Probab=97.26 E-value=0.0037 Score=58.02 Aligned_cols=43 Identities=14% Similarity=0.252 Sum_probs=25.5
Q ss_pred CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHH
Q 011079 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQT 204 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~ 204 (494)
..+++.|++|+|||..+ .++...+...+. .++++ +..+|...+
T Consensus 102 ~~l~l~G~~GtGKThLa-~AIa~~l~~~g~--~v~~i-~~~~l~~~l 144 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLA-AAIGNRLLAKGR--SVIVV-TVPDVMSRL 144 (248)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHcCC--CeEEE-EHHHHHHHH
Confidence 56999999999999763 334444444332 34443 334554433
No 218
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.23 E-value=0.004 Score=62.74 Aligned_cols=128 Identities=23% Similarity=0.309 Sum_probs=66.4
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhh-hcCCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHH
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEKI-DQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIM 233 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l-~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 233 (494)
++.++++||||+|||+.....+.... ...+ .++.++. |.|.-+. +.+..++...++.+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g--~~V~li~~D~~r~~a~---eqL~~~a~~~~vp~~~------------ 283 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGK--KKVALITLDTYRIGAV---EQLKTYAKIMGIPVEV------------ 283 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC--CeEEEEECCccHHHHH---HHHHHHHHHhCCceEc------------
Confidence 45688999999999987554443332 2222 2455444 5554332 2333333333333221
Q ss_pred HhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccC-CCcHHHHHHHHHH-CCCCCcEEEEEeecCcc-hHHH
Q 011079 234 RLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS-PEFQPSVEQLIRF-LPANRQILMFSATFPVT-VKDF 310 (494)
Q Consensus 234 ~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~-~~~~~~~~~~~~~-~~~~~~~i~~SATl~~~-~~~~ 310 (494)
+.++..+...+.. +.++++|+||.+-+... ......+..++.. ..+....+++|||.... +.+.
T Consensus 284 ---------~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~ 350 (424)
T PRK05703 284 ---------VYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI 350 (424)
T ss_pred ---------cCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH
Confidence 1233334443432 44689999999875322 1223345555552 22334578899997643 3333
Q ss_pred HHhh
Q 011079 311 KDKY 314 (494)
Q Consensus 311 ~~~~ 314 (494)
...|
T Consensus 351 ~~~f 354 (424)
T PRK05703 351 YKHF 354 (424)
T ss_pred HHHh
Confidence 3333
No 219
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.17 E-value=0.012 Score=59.92 Aligned_cols=119 Identities=20% Similarity=0.248 Sum_probs=60.9
Q ss_pred cCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHH
Q 011079 156 TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIM 233 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 233 (494)
.++.+.++|+||+|||+.....+....... .+.++.++. +.+..+ .+.++.++..+++.+...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~-~gkkVaLIdtDtyRigA---~EQLk~ya~iLgv~v~~a----------- 413 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQH-APRDVALVTTDTQRVGG---REQLHSYGRQLGIAVHEA----------- 413 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCceEEEecccccccH---HHHHHHhhcccCceeEec-----------
Confidence 355688999999999997544333322222 122444443 344443 233344444344332211
Q ss_pred HhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCC-cHHHHHHHHHHCCCCCcEEEEEeecC
Q 011079 234 RLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE-FQPSVEQLIRFLPANRQILMFSATFP 304 (494)
Q Consensus 234 ~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~-~~~~~~~~~~~~~~~~~~i~~SATl~ 304 (494)
.+++.+...+.. +.++++|+||.+-+..... ....+..+.... ....+++++++..
T Consensus 414 ----------~d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss 470 (559)
T PRK12727 414 ----------DSAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAH 470 (559)
T ss_pred ----------CcHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCC
Confidence 123334444442 4568999999997643211 122233332222 3455788888864
No 220
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=97.14 E-value=0.0022 Score=63.55 Aligned_cols=71 Identities=17% Similarity=0.070 Sum_probs=40.4
Q ss_pred CCCCcHHHHHHHHHHh----cCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc-CcHHHHHHHHHHHHH
Q 011079 140 FERPSPIQEESIPIAL----TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV-PTRELALQTSQVCKE 210 (494)
Q Consensus 140 ~~~~~~~Q~~~i~~~~----~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~-P~~~la~q~~~~~~~ 210 (494)
|...+|-|-+-+..+. .+.++++.+|+|+|||.+.+-.++.+....+...+-||-| -|..-.+.....++.
T Consensus 14 Y~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 14 YDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred CcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHH
Confidence 4566777766554443 4456999999999999886555555544333223334444 333333333444443
No 221
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.12 E-value=0.0012 Score=61.48 Aligned_cols=46 Identities=11% Similarity=0.282 Sum_probs=33.1
Q ss_pred ccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEeecC
Q 011079 258 CILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFP 304 (494)
Q Consensus 258 ~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SATl~ 304 (494)
...+.+.+||+||||.|.. +-+..+...+...+...++++.+--+.
T Consensus 125 ~~~~~fKiiIlDEcdsmts-daq~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTS-DAQAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCCcceEEEEechhhhhH-HHHHHHHHHHhccccceEEEEEcCChh
Confidence 3467789999999998754 345566777777666777777766643
No 222
>PRK06526 transposase; Provisional
Probab=97.12 E-value=0.0062 Score=56.93 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=20.1
Q ss_pred HHhcCCcEEEEccCCCchhHHhHHHHH
Q 011079 153 IALTGSDILARAKNGTGKTAAFCIPAL 179 (494)
Q Consensus 153 ~~~~~~~~ii~~~TGsGKT~~~~~~~l 179 (494)
.+..+.++++.||+|+|||..+.....
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHHHHH
Confidence 344667899999999999987544333
No 223
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.08 E-value=0.0065 Score=66.06 Aligned_cols=40 Identities=10% Similarity=0.192 Sum_probs=27.3
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 011079 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 300 (494)
..+++++||||+|+|... -...+.+++...+....+|+++
T Consensus 118 ~~~~KV~IIDEad~lt~~-a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQ-GFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred cCCceEEEEechhhcCHH-HHHHHHHHHhCCCCCeEEEEEe
Confidence 357899999999998543 3445556666666666666554
No 224
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.05 E-value=0.0057 Score=64.63 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=24.9
Q ss_pred cccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEee
Q 011079 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSAT 302 (494)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 302 (494)
.+++++||||+|.|.... ...+.+++..-+.+..+|+ ++|
T Consensus 118 gr~KVIIIDEah~LT~~A-~NALLKtLEEPP~~v~FIL-aTt 157 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA-FNAMLKTLEEPPPHVKFIL-ATT 157 (830)
T ss_pred CCceEEEEeChhhCCHHH-HHHHHHHHHhcCCCeEEEE-EEC
Confidence 468999999999885543 3344445555555555444 444
No 225
>PRK08181 transposase; Validated
Probab=97.03 E-value=0.011 Score=55.59 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=17.7
Q ss_pred HhcCCcEEEEccCCCchhHHhH
Q 011079 154 ALTGSDILARAKNGTGKTAAFC 175 (494)
Q Consensus 154 ~~~~~~~ii~~~TGsGKT~~~~ 175 (494)
+..++++++.||+|+|||..+.
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~ 124 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAA 124 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHH
Confidence 3466789999999999997543
No 226
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.00 E-value=0.0068 Score=61.03 Aligned_cols=129 Identities=15% Similarity=0.219 Sum_probs=68.6
Q ss_pred cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhc
Q 011079 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLY 236 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 236 (494)
.++++|++|+|||+.....+. ++...+ .++++++ +.|..+ .+.++.++...++.+..........
T Consensus 97 vI~lvG~~GsGKTTtaakLA~-~L~~~g--~kV~lV~~D~~R~aa---~eQL~~la~~~gvp~~~~~~~~d~~------- 163 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLAR-YFKKKG--LKVGLVAADTYRPAA---YDQLKQLAEKIGVPFYGDPDNKDAV------- 163 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHH-HHHHcC--CeEEEecCCCCCHHH---HHHHHHHHHHcCCcEEecCCccCHH-------
Confidence 488899999999998554443 343333 2455554 444443 2333333434444332111000000
Q ss_pred CCCeEEEEchHHHHHhHhcCCccccccceEEecccccccC-CCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhh
Q 011079 237 QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS-PEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKY 314 (494)
Q Consensus 237 ~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~-~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~ 314 (494)
..+.+.+.. +...++||+|.+-++.. ......+..+.....++.-++.++||...+..+....|
T Consensus 164 ----------~i~~~al~~----~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F 228 (437)
T PRK00771 164 ----------EIAKEGLEK----FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAF 228 (437)
T ss_pred ----------HHHHHHHHH----hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHH
Confidence 111222222 22348999999965432 23444556666666667778889998776555555554
No 227
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.99 E-value=0.0028 Score=63.96 Aligned_cols=19 Identities=32% Similarity=0.266 Sum_probs=15.6
Q ss_pred EEEEccCCCchhHHhHHHH
Q 011079 160 ILARAKNGTGKTAAFCIPA 178 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~ 178 (494)
++++||.|+|||+.+...+
T Consensus 43 ~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7999999999999855433
No 228
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.97 E-value=0.014 Score=58.30 Aligned_cols=131 Identities=11% Similarity=0.118 Sum_probs=70.4
Q ss_pred cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhc
Q 011079 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLY 236 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 236 (494)
.++++|++|+|||+.....+.. +...+ .++++++ |.|..|. .+++.++...++.+...........-
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~-l~~~G--~kV~lV~~D~~R~aA~---eQLk~~a~~~~vp~~~~~~~~dp~~i----- 170 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYY-YQRKG--FKPCLVCADTFRAGAF---DQLKQNATKARIPFYGSYTESDPVKI----- 170 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHHCC--CCEEEEcCcccchhHH---HHHHHHhhccCCeEEeecCCCCHHHH-----
Confidence 3788999999999875544432 33322 3556555 6666553 34444444455554433322221100
Q ss_pred CCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCC-CcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhh
Q 011079 237 QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSP-EFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKY 314 (494)
Q Consensus 237 ~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~-~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~ 314 (494)
..+.+.. ..-..+++||+|=+-++... .....+..+.....++.-++.++||...+..+....|
T Consensus 171 ------------~~~~l~~--~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F 235 (429)
T TIGR01425 171 ------------ASEGVEK--FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAF 235 (429)
T ss_pred ------------HHHHHHH--HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHH
Confidence 0001111 00135788888888764321 2344555555555566667888888766655555555
No 229
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.95 E-value=0.002 Score=59.38 Aligned_cols=87 Identities=21% Similarity=0.278 Sum_probs=65.9
Q ss_pred CCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCC-ChHHHHHHhc-CCCeEEEEchHHHHHhHhcCCcccccc
Q 011079 186 NNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGT-SLKDDIMRLY-QPVHLLVGTPGRILDLSKKGVCILKDC 263 (494)
Q Consensus 186 ~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~-~~~~Ilv~T~~~l~~~~~~~~~~l~~~ 263 (494)
...+.+||||.+-.-|..+.+.++.+.. -+..++.+..-. ...++...+. ...+|.|+||++|..++..+.+.++++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 4567899999988888777777777631 123344444333 5666666665 478999999999999999999999999
Q ss_pred ceEEeccccc
Q 011079 264 SMLVMDEADK 273 (494)
Q Consensus 264 ~~iViDEah~ 273 (494)
.+||||--|.
T Consensus 203 ~~ivlD~s~~ 212 (252)
T PF14617_consen 203 KRIVLDWSYL 212 (252)
T ss_pred eEEEEcCCcc
Confidence 9999998774
No 230
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.93 E-value=0.0066 Score=63.22 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=24.2
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 011079 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 300 (494)
..+++++||||+|+|....+ ..+.+.+..-+.+..+|+.|
T Consensus 122 ~gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred cCCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEe
Confidence 45689999999998854433 23333444434455555544
No 231
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.87 E-value=0.0074 Score=58.88 Aligned_cols=120 Identities=13% Similarity=0.175 Sum_probs=63.1
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHH
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMR 234 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 234 (494)
++.++++||+|+|||+.....+... ...+ .++.+++ |.|.-+ .+.++.++...++.+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l-~~~g--~~V~lItaDtyR~gA---veQLk~yae~lgvpv~~------------- 266 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQL-LKQN--RTVGFITTDTFRSGA---VEQFQGYADKLDVELIV------------- 266 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HHcC--CeEEEEeCCccCccH---HHHHHHHhhcCCCCEEe-------------
Confidence 4558899999999998755544433 2222 2455554 555544 23344444444443321
Q ss_pred hcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccC-CCcHHHHHHHHHHCCCCCcEEEEEeecC
Q 011079 235 LYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS-PEFQPSVEQLIRFLPANRQILMFSATFP 304 (494)
Q Consensus 235 ~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~-~~~~~~~~~~~~~~~~~~~~i~~SATl~ 304 (494)
..+|..+...+.... ...++++|+||=+=+... ......+..+.....+..-++.+|||..
T Consensus 267 --------~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~ 328 (407)
T PRK12726 267 --------ATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK 328 (407)
T ss_pred --------cCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc
Confidence 123444433333211 124578999998866432 2233444455555444444567787654
No 232
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.86 E-value=0.0014 Score=57.11 Aligned_cols=123 Identities=22% Similarity=0.309 Sum_probs=53.0
Q ss_pred EEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCCe
Q 011079 161 LARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVH 240 (494)
Q Consensus 161 ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 240 (494)
|+.|+-|-|||.+.-+.+...+.. +. .+++|.+|+.+-+..+.+.+.......+++..... ..............
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~-~~-~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~ 75 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK-GK-IRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKK---RIGQIIKLRFNKQR 75 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------EEEE-SS--S-HHHHHCC-----------------------------CCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh-cC-ceEEEecCCHHHHHHHHHHHHhhcccccccccccc---ccccccccccccce
Confidence 578999999999754433333322 22 47888889998887777765554444433320000 00000011113557
Q ss_pred EEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEeec
Q 011079 241 LLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATF 303 (494)
Q Consensus 241 Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SATl 303 (494)
|-+..|+.+... ....+++|||||=.+ -.+.+..++... ..++||.|.
T Consensus 76 i~f~~Pd~l~~~-------~~~~DlliVDEAAaI----p~p~L~~ll~~~----~~vv~stTi 123 (177)
T PF05127_consen 76 IEFVAPDELLAE-------KPQADLLIVDEAAAI----PLPLLKQLLRRF----PRVVFSTTI 123 (177)
T ss_dssp --B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCS----SEEEEEEEB
T ss_pred EEEECCHHHHhC-------cCCCCEEEEechhcC----CHHHHHHHHhhC----CEEEEEeec
Confidence 778888776431 224589999999865 345555554332 356778885
No 233
>PRK05642 DNA replication initiation factor; Validated
Probab=96.85 E-value=0.0036 Score=57.99 Aligned_cols=45 Identities=16% Similarity=0.344 Sum_probs=29.6
Q ss_pred ccccceEEecccccccCC-CcHHHHHHHHHHCCCCCcEEEEEeecC
Q 011079 260 LKDCSMLVMDEADKLLSP-EFQPSVEQLIRFLPANRQILMFSATFP 304 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~-~~~~~~~~~~~~~~~~~~~i~~SATl~ 304 (494)
+.+++++|+|++|.+... .+...+-.++..+....+.+++++|.+
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKS 140 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 445689999999976432 344556666666555445577777754
No 234
>PRK10867 signal recognition particle protein; Provisional
Probab=96.84 E-value=0.019 Score=57.76 Aligned_cols=57 Identities=23% Similarity=0.286 Sum_probs=32.4
Q ss_pred cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCcEEE
Q 011079 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVM 220 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~~~ 220 (494)
.++++|++|+|||+.....+.......+ .++++++ +.|..+. +.++.++...++.+.
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G--~kV~lV~~D~~R~aa~---eQL~~~a~~~gv~v~ 160 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKK--KKVLLVAADVYRPAAI---EQLKTLGEQIGVPVF 160 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcC--CcEEEEEccccchHHH---HHHHHHHhhcCCeEE
Confidence 3788999999999986554443322212 2455555 6666553 233333444455543
No 235
>PRK08116 hypothetical protein; Validated
Probab=96.84 E-value=0.033 Score=52.63 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=24.3
Q ss_pred cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHH
Q 011079 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELA 201 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la 201 (494)
.+++.|++|+|||..+ .++...+...+ ..++++. ...+.
T Consensus 116 gl~l~G~~GtGKThLa-~aia~~l~~~~--~~v~~~~-~~~ll 154 (268)
T PRK08116 116 GLLLWGSVGTGKTYLA-ACIANELIEKG--VPVIFVN-FPQLL 154 (268)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHHHcC--CeEEEEE-HHHHH
Confidence 4999999999999863 34555555432 2444443 33443
No 236
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.83 E-value=0.0096 Score=62.19 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=25.3
Q ss_pred cccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEee
Q 011079 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSAT 302 (494)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 302 (494)
.+++++||||+|+|.... ...+.+++..-+....+|+ ++|
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FIL-aTt 156 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLF-ATT 156 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEE-EEC
Confidence 467899999999875433 3445555555555555554 444
No 237
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.78 E-value=0.028 Score=53.19 Aligned_cols=132 Identities=20% Similarity=0.300 Sum_probs=68.4
Q ss_pred CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHh
Q 011079 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL 235 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 235 (494)
+.++++|++|+|||+.....+... ... +.+++++. +.|.-+.. .+..++...++.+.....+..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l-~~~--g~~V~li~~D~~r~~a~~---ql~~~~~~~~i~~~~~~~~~d-------- 138 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKL-KKQ--GKSVLLAAGDTFRAAAIE---QLEEWAKRLGVDVIKQKEGAD-------- 138 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH-Hhc--CCEEEEEeCCCCCHHHHH---HHHHHHHhCCeEEEeCCCCCC--------
Confidence 347788999999999755544333 332 23565555 45554432 222233333333321111111
Q ss_pred cCCCeEEEEchHH-HHHhHhcCCccccccceEEecccccccC-CCcHHHHHHHHHHCC------CCCcEEEEEeecCcch
Q 011079 236 YQPVHLLVGTPGR-ILDLSKKGVCILKDCSMLVMDEADKLLS-PEFQPSVEQLIRFLP------ANRQILMFSATFPVTV 307 (494)
Q Consensus 236 ~~~~~Ilv~T~~~-l~~~~~~~~~~l~~~~~iViDEah~~~~-~~~~~~~~~~~~~~~------~~~~~i~~SATl~~~~ 307 (494)
|.. ....+.. ....++++|++|=+-++.. ......+.++.+..+ ++..++.++||...+.
T Consensus 139 ----------p~~~~~~~l~~--~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~ 206 (272)
T TIGR00064 139 ----------PAAVAFDAIQK--AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNA 206 (272)
T ss_pred ----------HHHHHHHHHHH--HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHH
Confidence 111 1111111 1135689999998876543 223445666655554 5667889999976544
Q ss_pred HHHHHhhc
Q 011079 308 KDFKDKYL 315 (494)
Q Consensus 308 ~~~~~~~~ 315 (494)
......|.
T Consensus 207 ~~~~~~f~ 214 (272)
T TIGR00064 207 LEQAKVFN 214 (272)
T ss_pred HHHHHHHH
Confidence 44444443
No 238
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.78 E-value=0.017 Score=50.14 Aligned_cols=117 Identities=17% Similarity=0.227 Sum_probs=58.6
Q ss_pred EEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCC----hHHHHHHh
Q 011079 160 ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTS----LKDDIMRL 235 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~ 235 (494)
+++.||.|+||+..+...+-..+....... .|.. ...++.+.......+..+..... ..++++
T Consensus 22 ~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~----~c~~-------c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir-- 88 (162)
T PF13177_consen 22 LLFHGPSGSGKKTLALAFARALLCSNPNED----PCGE-------CRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIR-- 88 (162)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC-TT-CTT------SS-------SHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHH--
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCC-------CHHHHHHHhccCcceEEEecccccchhhHHHHH--
Confidence 799999999999875554444333332211 2222 12233332222233333333221 112211
Q ss_pred cCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEeec
Q 011079 236 YQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATF 303 (494)
Q Consensus 236 ~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SATl 303 (494)
.+...+..... ...++++||||||.|.. .-...+.+.+..-+.+..+|++|-.+
T Consensus 89 ------------~i~~~~~~~~~-~~~~KviiI~~ad~l~~-~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 89 ------------EIIEFLSLSPS-EGKYKVIIIDEADKLTE-EAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp ------------HHHHHCTSS-T-TSSSEEEEEETGGGS-H-HHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred ------------HHHHHHHHHHh-cCCceEEEeehHhhhhH-HHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 12222222222 35789999999998743 34556666777766677666665553
No 239
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.76 E-value=0.022 Score=52.74 Aligned_cols=44 Identities=18% Similarity=0.276 Sum_probs=25.8
Q ss_pred ccccceEEecccccccCCCcHH-HHHHHHHHCCC-CCcEEEEEeecC
Q 011079 260 LKDCSMLVMDEADKLLSPEFQP-SVEQLIRFLPA-NRQILMFSATFP 304 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~-~~~~~~~~~~~-~~~~i~~SATl~ 304 (494)
+.++++|||||++......+.. .+..++..... ...+|+ |.-++
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tii-tSNl~ 205 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGM-LTNSN 205 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEE-eCCCC
Confidence 5578999999999765444443 34445544333 344444 44443
No 240
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.76 E-value=0.0037 Score=58.38 Aligned_cols=79 Identities=18% Similarity=0.310 Sum_probs=59.3
Q ss_pred HHHHHhhcCCccEEEEcCcccccCCCCC--------CCEEEEcCCCCCHHHHHHHhccccCCCCc-ceEEEEeccc---c
Q 011079 398 RVFHDFRNGACRNLVCTDLFTRGIDIQA--------VNVVINFDFPKNSETYLHRVGRSGRFGHL-GLAVNLITYE---D 465 (494)
Q Consensus 398 ~i~~~f~~g~~~vlvaT~~~~~Gidi~~--------v~~VI~~~~p~s~~~~~Qr~GRagR~g~~-g~~~~l~~~~---~ 465 (494)
...+.|.+|...|+|.++++++||.+.+ -++-|...+|+|....+|..||+.|.|+. .-.|.++..+ |
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 4567899999999999999999999874 23566788999999999999999999884 3345555432 4
Q ss_pred hHHHHHHHHHh
Q 011079 466 RFNLYRIEQEL 476 (494)
Q Consensus 466 ~~~~~~l~~~~ 476 (494)
......+...|
T Consensus 132 ~Rfas~va~rL 142 (278)
T PF13871_consen 132 RRFASTVARRL 142 (278)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 241
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.75 E-value=0.0088 Score=59.76 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=25.7
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCCCchhHHhH
Q 011079 143 PSPIQEESIPIALTGSDILARAKNGTGKTAAFC 175 (494)
Q Consensus 143 ~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~ 175 (494)
+.......+..+..++++++.|++|+|||+.+.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 334455666777788999999999999998753
No 242
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.75 E-value=0.0091 Score=63.68 Aligned_cols=130 Identities=15% Similarity=0.155 Sum_probs=68.0
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcC-cHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHh
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVP-TRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL 235 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P-~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 235 (494)
++.+.++||||+|||+++...+.......+.....++-+. .|.-+ .+.++.++...++.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA---~eQL~~~a~~~gvpv~--------------- 246 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGA---LEQLRIYGRILGVPVH--------------- 246 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHH---HHHHHHHHHhCCCCcc---------------
Confidence 4457899999999999865544333223322222343343 33323 2334444443333221
Q ss_pred cCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCC-CcHHHHHHHHHHCCCCCcEEEEEeecCcc-hHHHHHh
Q 011079 236 YQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSP-EFQPSVEQLIRFLPANRQILMFSATFPVT-VKDFKDK 313 (494)
Q Consensus 236 ~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~-~~~~~~~~~~~~~~~~~~~i~~SATl~~~-~~~~~~~ 313 (494)
++.+|..+...+.. +.++++|+||=+=+.... .....+..+.....+...++++|||...+ +.+....
T Consensus 247 ------~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~ 316 (767)
T PRK14723 247 ------AVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHA 316 (767)
T ss_pred ------ccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHH
Confidence 12245555444442 456789999988765432 22333334444444556678899996533 3334444
Q ss_pred h
Q 011079 314 Y 314 (494)
Q Consensus 314 ~ 314 (494)
|
T Consensus 317 f 317 (767)
T PRK14723 317 Y 317 (767)
T ss_pred H
Confidence 4
No 243
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.74 E-value=0.013 Score=61.79 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=23.6
Q ss_pred cccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEE
Q 011079 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMF 299 (494)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (494)
..+.++||||+|+|.... ...+.+++..-+....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEEEe
Confidence 568899999999885433 33444455554445544443
No 244
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.74 E-value=0.02 Score=58.43 Aligned_cols=115 Identities=19% Similarity=0.180 Sum_probs=56.5
Q ss_pred cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCCh-HHHHHHhcC
Q 011079 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSL-KDDIMRLYQ 237 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~ 237 (494)
.++++||.|+|||+.+.+.+....-..+.. .--|- ....|..+.......+..+.+.... -++++.
T Consensus 37 a~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~---~~pCg-------~C~~C~~i~~~~~~Dv~eidaas~~~vddIR~--- 103 (491)
T PRK14964 37 SILLVGASGVGKTTCARIISLCLNCSNGPT---SDPCG-------TCHNCISIKNSNHPDVIEIDAASNTSVDDIKV--- 103 (491)
T ss_pred eEEEECCCCccHHHHHHHHHHHHcCcCCCC---CCCcc-------ccHHHHHHhccCCCCEEEEecccCCCHHHHHH---
Confidence 489999999999997554432221111110 00011 1334445544445555555443221 122222
Q ss_pred CCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEE
Q 011079 238 PVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMF 299 (494)
Q Consensus 238 ~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (494)
+.+...... ...++.++||||+|.+....+ ..+.+.+..-++...+|+.
T Consensus 104 -----------Iie~~~~~P-~~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 104 -----------ILENSCYLP-ISSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFILA 152 (491)
T ss_pred -----------HHHHHHhcc-ccCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEEE
Confidence 122222222 246789999999998754332 3334444444444444443
No 245
>PRK06893 DNA replication initiation factor; Validated
Probab=96.71 E-value=0.0045 Score=57.12 Aligned_cols=46 Identities=15% Similarity=0.371 Sum_probs=28.7
Q ss_pred ccccceEEecccccccC-CCcHHHHHHHHHHCCC-CCcEEEEEeecCc
Q 011079 260 LKDCSMLVMDEADKLLS-PEFQPSVEQLIRFLPA-NRQILMFSATFPV 305 (494)
Q Consensus 260 l~~~~~iViDEah~~~~-~~~~~~~~~~~~~~~~-~~~~i~~SATl~~ 305 (494)
+.+.++|||||+|.+.. ..+...+..++..+.. ..+++++|++.++
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p 136 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSP 136 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCCh
Confidence 45678999999998753 2334344555554433 3456777887643
No 246
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.71 E-value=0.02 Score=56.79 Aligned_cols=125 Identities=14% Similarity=0.140 Sum_probs=66.3
Q ss_pred cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhc
Q 011079 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLY 236 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 236 (494)
.++++||+|+|||+.....+.......+ .++.++. +.|..+.. .++.++...++.+..
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~~G--~~V~Lit~Dt~R~aA~e---QLk~yAe~lgvp~~~--------------- 284 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMG--KSVSLYTTDNYRIAAIE---QLKRYADTMGMPFYP--------------- 284 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcC--CeEEEecccchhhhHHH---HHHHHHHhcCCCeee---------------
Confidence 3778999999999986665554433222 2454444 55666543 334444333433211
Q ss_pred CCCeEEEEchHHHHHhHhcCCccccccceEEecccccccC-CCcHHHHHHHHHHCC---CCCcEEEEEeecCc-chHHHH
Q 011079 237 QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS-PEFQPSVEQLIRFLP---ANRQILMFSATFPV-TVKDFK 311 (494)
Q Consensus 237 ~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~-~~~~~~~~~~~~~~~---~~~~~i~~SATl~~-~~~~~~ 311 (494)
+.....+...+. -.++++|+||=+-+... ......+..++.... +...++.+|||... .+....
T Consensus 285 ------~~~~~~l~~~l~-----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~ 353 (432)
T PRK12724 285 ------VKDIKKFKETLA-----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVL 353 (432)
T ss_pred ------hHHHHHHHHHHH-----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHH
Confidence 001122333232 24678999997765422 223344455554431 23457889999865 344444
Q ss_pred Hhh
Q 011079 312 DKY 314 (494)
Q Consensus 312 ~~~ 314 (494)
..|
T Consensus 354 ~~f 356 (432)
T PRK12724 354 KAY 356 (432)
T ss_pred HHh
Confidence 433
No 247
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.70 E-value=0.023 Score=58.70 Aligned_cols=39 Identities=13% Similarity=0.268 Sum_probs=25.7
Q ss_pred cccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 011079 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (494)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 300 (494)
.+++++||||+|.|....+ ..+.+.+..-++...+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4689999999998854433 34445566555566555544
No 248
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.70 E-value=0.019 Score=55.92 Aligned_cols=36 Identities=22% Similarity=0.067 Sum_probs=27.6
Q ss_pred CcHHHHHHHHHHhcCC----cEEEEccCCCchhHHhHHHH
Q 011079 143 PSPIQEESIPIALTGS----DILARAKNGTGKTAAFCIPA 178 (494)
Q Consensus 143 ~~~~Q~~~i~~~~~~~----~~ii~~~TGsGKT~~~~~~~ 178 (494)
++|+|...+..+.... -+++.||.|.|||+.+...+
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A 43 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLA 43 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHH
Confidence 4788888888887543 38899999999998754433
No 249
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.69 E-value=0.018 Score=66.31 Aligned_cols=62 Identities=21% Similarity=0.251 Sum_probs=44.0
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEccCCCchhHHh--HHHHHHhhhcCCCceEEEEEcCcHHHHHHH
Q 011079 142 RPSPIQEESIPIALTG--SDILARAKNGTGKTAAF--CIPALEKIDQDNNVIQVVILVPTRELALQT 204 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~--~~~ii~~~TGsGKT~~~--~~~~l~~l~~~~~~~~~lil~P~~~la~q~ 204 (494)
.+++-|.+|+..++.. +-++|.|..|+|||+.. ++.++..+.+ ..+..++.++||-..+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e-~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE-SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh-ccCceEEEEechHHHHHHH
Confidence 6899999999999966 55999999999999873 1222222222 2234688889997765444
No 250
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.68 E-value=0.0077 Score=64.91 Aligned_cols=38 Identities=13% Similarity=0.161 Sum_probs=23.3
Q ss_pred cccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEE
Q 011079 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMF 299 (494)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (494)
..+.++||||||+|... -...+.+++..-+....+|+.
T Consensus 118 gk~KViIIDEAh~LT~e-AqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRS-SFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhccCCCeEEEEE
Confidence 46889999999988432 233444455544445554443
No 251
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.68 E-value=0.022 Score=66.46 Aligned_cols=61 Identities=18% Similarity=0.203 Sum_probs=44.1
Q ss_pred CCcHHHHHHHHHHhcCC--cEEEEccCCCchhHHhHHHHHHhhhc--CCCceEEEEEcCcHHHHHH
Q 011079 142 RPSPIQEESIPIALTGS--DILARAKNGTGKTAAFCIPALEKIDQ--DNNVIQVVILVPTRELALQ 203 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~--~~ii~~~TGsGKT~~~~~~~l~~l~~--~~~~~~~lil~P~~~la~q 203 (494)
.+++-|.+|+..++... -++|.|..|+|||+. +-.++..+.. ...+..++.++||-..+..
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~ 1031 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTLPESERPRVVGLGPTHRAVGE 1031 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHhhcccCceEEEECCcHHHHHH
Confidence 68999999999999864 489999999999987 3334333321 1223467888999776543
No 252
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.66 E-value=0.015 Score=50.07 Aligned_cols=35 Identities=29% Similarity=0.176 Sum_probs=22.3
Q ss_pred EEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCc
Q 011079 160 ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPT 197 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~ 197 (494)
+++.|++|+|||+.....+..... .+..++++...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECC
Confidence 689999999999975444333322 22356666643
No 253
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.65 E-value=0.011 Score=60.24 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=27.9
Q ss_pred CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHH
Q 011079 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQ 203 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q 203 (494)
+.+++.|++|+|||.. +.++...+.....+.+++++.+ ..+...
T Consensus 142 npl~i~G~~G~GKTHL-l~Ai~~~l~~~~~~~~v~yv~~-~~f~~~ 185 (450)
T PRK14087 142 NPLFIYGESGMGKTHL-LKAAKNYIESNFSDLKVSYMSG-DEFARK 185 (450)
T ss_pred CceEEECCCCCcHHHH-HHHHHHHHHHhCCCCeEEEEEH-HHHHHH
Confidence 3489999999999965 3455555544334446776655 344433
No 254
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.65 E-value=0.023 Score=53.45 Aligned_cols=130 Identities=14% Similarity=0.104 Sum_probs=68.9
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc--CcH-HHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHH
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTR-ELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIM 233 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~-~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 233 (494)
+..+.+.|++|+|||+.+...+... ... +.++.++. +.+ ....|+. .++...++.+...
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l-~~~--~~~v~~i~~D~~ri~~~~ql~----~~~~~~~~~~~~~----------- 136 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQF-HGK--KKTVGFITTDHSRIGTVQQLQ----DYVKTIGFEVIAV----------- 136 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH-HHc--CCeEEEEecCCCCHHHHHHHH----HHhhhcCceEEec-----------
Confidence 3568999999999999765443332 222 22444444 333 3333333 3333333333221
Q ss_pred HhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccC-CCcHHHHHHHHHHCCCCCcEEEEEeecCc-chHHHH
Q 011079 234 RLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS-PEFQPSVEQLIRFLPANRQILMFSATFPV-TVKDFK 311 (494)
Q Consensus 234 ~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~-~~~~~~~~~~~~~~~~~~~~i~~SATl~~-~~~~~~ 311 (494)
.++..+...+..- ....++++|++|-+=+... ......+.+++....++..++.+|||... +..+..
T Consensus 137 ----------~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~ 205 (270)
T PRK06731 137 ----------RDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEII 205 (270)
T ss_pred ----------CCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHH
Confidence 1333343333221 1124689999999976532 22344455555555555557789999653 555665
Q ss_pred Hhhc
Q 011079 312 DKYL 315 (494)
Q Consensus 312 ~~~~ 315 (494)
..|-
T Consensus 206 ~~f~ 209 (270)
T PRK06731 206 TNFK 209 (270)
T ss_pred HHhC
Confidence 6553
No 255
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.63 E-value=0.015 Score=59.16 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=18.5
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHh
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEK 181 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~ 181 (494)
++.+.++||||+|||+.....+-..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH
Confidence 4458899999999999865544333
No 256
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.61 E-value=0.017 Score=51.31 Aligned_cols=48 Identities=17% Similarity=0.047 Sum_probs=32.5
Q ss_pred EEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011079 160 ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL 211 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (494)
++|.|++|+|||+..+..+...+.. +.++++++.. +...++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~---g~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR---GEPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC---CCcEEEEECC-CCHHHHHHHHHHc
Confidence 6899999999999876666665543 2367877642 4455555555554
No 257
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.61 E-value=0.013 Score=53.96 Aligned_cols=43 Identities=12% Similarity=0.268 Sum_probs=24.5
Q ss_pred ccceEEecccccccCC-CcHHHHHHHHHHCCCCCcEEEEEeecC
Q 011079 262 DCSMLVMDEADKLLSP-EFQPSVEQLIRFLPANRQILMFSATFP 304 (494)
Q Consensus 262 ~~~~iViDEah~~~~~-~~~~~~~~~~~~~~~~~~~i~~SATl~ 304 (494)
..++|||||+|.+... .....+..++.........+++|++.+
T Consensus 90 ~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 90 QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 3578999999987543 234455555544322222455566643
No 258
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.61 E-value=0.012 Score=53.92 Aligned_cols=108 Identities=18% Similarity=0.252 Sum_probs=58.4
Q ss_pred cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCC
Q 011079 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQP 238 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 238 (494)
.+++.|++|+|||-- +.++...+.+...+.+++++... +........+.. .
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~~v~y~~~~-~f~~~~~~~~~~---------------~------------ 86 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQHPGKRVVYLSAE-EFIREFADALRD---------------G------------ 86 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHCTTS-EEEEEHH-HHHHHHHHHHHT---------------T------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhccccccceeecHH-HHHHHHHHHHHc---------------c------------
Confidence 389999999999984 55555555544344467766532 222221111111 0
Q ss_pred CeEEEEchHHHHHhHhcCCccccccceEEecccccccCCC-cHHHHHHHHHHC-CCCCcEEEEEeecCcchH
Q 011079 239 VHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE-FQPSVEQLIRFL-PANRQILMFSATFPVTVK 308 (494)
Q Consensus 239 ~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~-~~~~~~~~~~~~-~~~~~~i~~SATl~~~~~ 308 (494)
....+.+ .+..+++++||++|.+.... ....+-.++..+ ..+.++|+.|...|..+.
T Consensus 87 ------~~~~~~~-------~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~ 145 (219)
T PF00308_consen 87 ------EIEEFKD-------RLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELS 145 (219)
T ss_dssp ------SHHHHHH-------HHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTT
T ss_pred ------cchhhhh-------hhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcccc
Confidence 1111211 25678999999999876532 233444444443 235566666667665543
No 259
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.60 E-value=0.015 Score=61.03 Aligned_cols=40 Identities=13% Similarity=0.253 Sum_probs=23.3
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 011079 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 300 (494)
...++++||||+|+|....|. .+.+.+..-+....+|+.+
T Consensus 122 ~g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred cCCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEEEEEE
Confidence 356899999999988544332 2333333334444444433
No 260
>PTZ00293 thymidine kinase; Provisional
Probab=96.59 E-value=0.014 Score=52.45 Aligned_cols=38 Identities=13% Similarity=0.041 Sum_probs=25.4
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCc
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPT 197 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~ 197 (494)
|+=-++.||++||||+..+..+..+.... .+++++-|.
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~ag---~kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYSE---KKCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHcC---CceEEEEec
Confidence 33468899999999998555444443322 267888885
No 261
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.58 E-value=0.034 Score=55.58 Aligned_cols=123 Identities=15% Similarity=0.127 Sum_probs=60.2
Q ss_pred cCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCc-HHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHH
Q 011079 156 TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPT-RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMR 234 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~-~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 234 (494)
.+..+.++|+||+|||+.....+-......+.....++.+.+ |.-+ .+.+..++..+++.+....
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~riga---lEQL~~~a~ilGvp~~~v~----------- 255 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGG---HEQLRIYGKLLGVSVRSIK----------- 255 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhH---HHHHHHHHHHcCCceecCC-----------
Confidence 455688999999999997543333222222222234555544 3322 2233344443344432211
Q ss_pred hcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccC-CCcHHHHHHHHHHCCCCCcEEEEEeecCcc
Q 011079 235 LYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS-PEFQPSVEQLIRFLPANRQILMFSATFPVT 306 (494)
Q Consensus 235 ~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~-~~~~~~~~~~~~~~~~~~~~i~~SATl~~~ 306 (494)
++..+...+. .+.+.+++++|.+=+... ......+..+.....+...++++|||....
T Consensus 256 ----------~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~ 314 (420)
T PRK14721 256 ----------DIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGD 314 (420)
T ss_pred ----------CHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHH
Confidence 1212222222 256778899998743321 112233333322223345578899997544
No 262
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.58 E-value=0.0076 Score=55.87 Aligned_cols=43 Identities=14% Similarity=0.264 Sum_probs=24.3
Q ss_pred ccceEEecccccccCC-CcHHHHHHHHHHCCC-CCcEEEEEeecC
Q 011079 262 DCSMLVMDEADKLLSP-EFQPSVEQLIRFLPA-NRQILMFSATFP 304 (494)
Q Consensus 262 ~~~~iViDEah~~~~~-~~~~~~~~~~~~~~~-~~~~i~~SATl~ 304 (494)
++++|+|||+|.+... .+...+..++..+.. ....+++|++.+
T Consensus 97 ~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~ 141 (235)
T PRK08084 97 QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRP 141 (235)
T ss_pred hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCC
Confidence 4578999999987532 334444455544432 222355566544
No 263
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.57 E-value=0.04 Score=55.42 Aligned_cols=57 Identities=25% Similarity=0.302 Sum_probs=31.7
Q ss_pred cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCcEEE
Q 011079 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVM 220 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~~~ 220 (494)
.++++|++|+|||+...-.+.......+ .++++++ +.|..+.+ .++.++...++.+.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g--~kV~lV~~D~~R~~a~~---QL~~~a~~~gvp~~ 159 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQG--KKVLLVACDLYRPAAIE---QLKVLGQQVGVPVF 159 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCC--CeEEEEeccccchHHHH---HHHHHHHhcCCceE
Confidence 3788999999999986554444222222 2455555 55655533 33333444444443
No 264
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.55 E-value=0.0081 Score=65.73 Aligned_cols=150 Identities=15% Similarity=0.064 Sum_probs=88.6
Q ss_pred cCCcEEEEccCCCchhHHhHHHHHHhhhc-----------CC----CceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEE
Q 011079 156 TGSDILARAKNGTGKTAAFCIPALEKIDQ-----------DN----NVIQVVILVPTRELALQTSQVCKELGKHLNIQVM 220 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~-----------~~----~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~ 220 (494)
.|+++++.-..|.|||.+-+...+..+.. .+ ..+..|||||... ..||.+.+..-... ++.+.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aI-l~QW~~EI~kH~~~-~lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAI-LMQWFEEIHKHISS-LLKVL 450 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHH-HHHHHHHHHHhccc-cceEE
Confidence 45678999999999999866555444311 11 2235799999754 45666655554432 25666
Q ss_pred EEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCC--------------cc----cc--ccceEEecccccccCCCcH
Q 011079 221 VTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGV--------------CI----LK--DCSMLVMDEADKLLSPEFQ 280 (494)
Q Consensus 221 ~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~--------------~~----l~--~~~~iViDEah~~~~~~~~ 280 (494)
...|-...........-+++||++|+..|...+.... .. |- .+=.|++|||..+-. -.
T Consensus 451 ~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ss 528 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SS 528 (1394)
T ss_pred EEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hH
Confidence 6555433221111222468999999999876433210 00 00 112399999996533 35
Q ss_pred HHHHHHHHHCCCCCcEEEEEeecCcchHHH
Q 011079 281 PSVEQLIRFLPANRQILMFSATFPVTVKDF 310 (494)
Q Consensus 281 ~~~~~~~~~~~~~~~~i~~SATl~~~~~~~ 310 (494)
....+++.+++.- -.-++|+|+-..+.++
T Consensus 529 S~~a~M~~rL~~i-n~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 529 SAAAEMVRRLHAI-NRWCVTGTPIQKIDDL 557 (1394)
T ss_pred HHHHHHHHHhhhh-ceeeecCCchhhhhhh
Confidence 5666777777543 3468899964444443
No 265
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.53 E-value=0.032 Score=58.71 Aligned_cols=40 Identities=10% Similarity=0.186 Sum_probs=26.4
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 011079 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 300 (494)
+..+++|||||+|.|.... ...+.+.+..-+....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 5678999999999885433 334445555555666666644
No 266
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.53 E-value=0.027 Score=59.36 Aligned_cols=40 Identities=10% Similarity=0.189 Sum_probs=25.4
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 011079 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 300 (494)
+.++++|||||+|.|.... ...+.+.+..-+....+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 4578999999999875322 334445555555566555544
No 267
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.52 E-value=0.017 Score=58.23 Aligned_cols=144 Identities=15% Similarity=0.226 Sum_probs=80.8
Q ss_pred EEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHH-HHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcC-
Q 011079 160 ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE-LALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQ- 237 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~-la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~- 237 (494)
.++.|..|||||.....-++..+.....+.+++++-|+.. +...+...+......+++....-...... .+ .+..
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i-~~~~~ 80 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI-KILNT 80 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE-EecCC
Confidence 6889999999999888777777766423457888888876 55556677766655555432111111100 00 1111
Q ss_pred CCeEEEEch-HHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCC--CCcEEEEEeecCcchHHHHHhh
Q 011079 238 PVHLLVGTP-GRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPA--NRQILMFSATFPVTVKDFKDKY 314 (494)
Q Consensus 238 ~~~Ilv~T~-~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~--~~~~i~~SATl~~~~~~~~~~~ 314 (494)
+..|++..- +.... +. ....+.++.+|||..+.. ..+..++.++.. ....+++|.|++....-+...|
T Consensus 81 g~~i~f~g~~d~~~~-ik----~~~~~~~~~idEa~~~~~----~~~~~l~~rlr~~~~~~~i~~t~NP~~~~~w~~~~f 151 (396)
T TIGR01547 81 GKKFIFKGLNDKPNK-LK----SGAGIAIIWFEEASQLTF----EDIKELIPRLRETGGKKFIIFSSNPESPLHWVKKRF 151 (396)
T ss_pred CeEEEeecccCChhH-hh----CcceeeeehhhhhhhcCH----HHHHHHHHHhhccCCccEEEEEcCcCCCccHHHHHH
Confidence 334555432 11111 11 123468999999998743 345555555532 2224788999765444444444
Q ss_pred c
Q 011079 315 L 315 (494)
Q Consensus 315 ~ 315 (494)
.
T Consensus 152 ~ 152 (396)
T TIGR01547 152 I 152 (396)
T ss_pred H
Confidence 4
No 268
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.49 E-value=0.0052 Score=54.91 Aligned_cols=41 Identities=12% Similarity=0.290 Sum_probs=27.6
Q ss_pred cccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEee
Q 011079 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSAT 302 (494)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 302 (494)
.+...||+||||.|-+ +-+..++..+....+..++.+..-+
T Consensus 112 grhKIiILDEADSMT~-gAQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTA-GAQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CceeEEEeeccchhhh-HHHHHHHHHHHHHcccchhhhhhcc
Confidence 5678899999998843 4566666666666555555554444
No 269
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.48 E-value=0.014 Score=59.77 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=24.0
Q ss_pred CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcC
Q 011079 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVP 196 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 196 (494)
+.+++.|++|+|||... .++...+.....+.+++++..
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEKNPNAKVVYVTS 186 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhCCCCeEEEEEH
Confidence 34899999999999863 344444444332345666643
No 270
>PRK08727 hypothetical protein; Validated
Probab=96.46 E-value=0.01 Score=54.87 Aligned_cols=34 Identities=21% Similarity=0.117 Sum_probs=20.8
Q ss_pred cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc
Q 011079 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (494)
.+++.|++|+|||.... ++...+...+ .+++++.
T Consensus 43 ~l~l~G~~G~GKThL~~-a~~~~~~~~~--~~~~y~~ 76 (233)
T PRK08727 43 WLYLSGPAGTGKTHLAL-ALCAAAEQAG--RSSAYLP 76 (233)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHHcC--CcEEEEe
Confidence 39999999999997533 3333333322 2555553
No 271
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.43 E-value=0.036 Score=58.05 Aligned_cols=40 Identities=10% Similarity=0.213 Sum_probs=25.4
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 011079 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 300 (494)
...+.++||||+|.|.... ...+.+.+..-+....+|+.+
T Consensus 116 ~~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 4678999999999885433 334445555545555555544
No 272
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.42 E-value=0.018 Score=57.16 Aligned_cols=39 Identities=13% Similarity=0.228 Sum_probs=22.9
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEE
Q 011079 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMF 299 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (494)
.....++||||+|.+....+ ..+.+.+..-+....+|+.
T Consensus 117 ~~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~ 155 (363)
T PRK14961 117 KSRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILA 155 (363)
T ss_pred cCCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEE
Confidence 35678999999998854322 2333444444445555554
No 273
>PHA02533 17 large terminase protein; Provisional
Probab=96.42 E-value=0.031 Score=58.03 Aligned_cols=147 Identities=14% Similarity=0.067 Sum_probs=84.1
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc--EE
Q 011079 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI--QV 219 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~--~~ 219 (494)
.+.|+|...+..+..++-.++..+=..|||+.....++...... .+..+++++|+..-|..+.+.++.+...... ..
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~-~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~~ 137 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN-KDKNVGILAHKASMAAEVLDRTKQAIELLPDFLQP 137 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHhhc
Confidence 57899999998876666677888889999998665444333322 2348999999999888887777655443211 10
Q ss_pred EEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCC--CCcEE
Q 011079 220 MVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPA--NRQIL 297 (494)
Q Consensus 220 ~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~--~~~~i 297 (494)
.. ..... ....+.++..|.+.|... +...-.+++++++||+|.+.+ +...+..+...+.. ..+++
T Consensus 138 ~i-~~~~~---~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~~~r~i 204 (534)
T PHA02533 138 GI-VEWNK---GSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGRSSKII 204 (534)
T ss_pred ce-eecCc---cEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCCCceEE
Confidence 00 00000 011123455555544321 111223567899999997643 33444444433332 23455
Q ss_pred EEEee
Q 011079 298 MFSAT 302 (494)
Q Consensus 298 ~~SAT 302 (494)
++|.+
T Consensus 205 iiSTp 209 (534)
T PHA02533 205 ITSTP 209 (534)
T ss_pred EEECC
Confidence 55555
No 274
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.42 E-value=0.029 Score=55.12 Aligned_cols=41 Identities=12% Similarity=0.319 Sum_probs=26.0
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEee
Q 011079 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSAT 302 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 302 (494)
.....+|||||+|.+.. .....+..++...+....+|+ +++
T Consensus 123 ~~~~~vlilDe~~~l~~-~~~~~L~~~le~~~~~~~~Il-~~~ 163 (337)
T PRK12402 123 SADYKTILLDNAEALRE-DAQQALRRIMEQYSRTCRFII-ATR 163 (337)
T ss_pred CCCCcEEEEeCcccCCH-HHHHHHHHHHHhccCCCeEEE-EeC
Confidence 45678999999998743 234455566666655565554 444
No 275
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.41 E-value=0.038 Score=56.83 Aligned_cols=20 Identities=35% Similarity=0.345 Sum_probs=16.3
Q ss_pred cEEEEccCCCchhHHhHHHH
Q 011079 159 DILARAKNGTGKTAAFCIPA 178 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~ 178 (494)
.++++||.|+|||+.+-+.+
T Consensus 45 a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48999999999999855443
No 276
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.39 E-value=0.055 Score=52.59 Aligned_cols=41 Identities=22% Similarity=0.217 Sum_probs=25.1
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHH
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELA 201 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la 201 (494)
+..+++.|+||+|||.... ++...+...+ ..|+++. ...+.
T Consensus 183 ~~~Lll~G~~GtGKThLa~-aIa~~l~~~g--~~V~y~t-~~~l~ 223 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSN-CIAKELLDRG--KSVIYRT-ADELI 223 (329)
T ss_pred CCcEEEECCCCCcHHHHHH-HHHHHHHHCC--CeEEEEE-HHHHH
Confidence 4679999999999998633 3444444332 2455544 33443
No 277
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.39 E-value=0.033 Score=49.63 Aligned_cols=19 Identities=21% Similarity=0.141 Sum_probs=15.3
Q ss_pred cEEEEccCCCchhHHhHHH
Q 011079 159 DILARAKNGTGKTAAFCIP 177 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~ 177 (494)
.+++.||.|+|||+.+...
T Consensus 16 ~~L~~G~~G~gkt~~a~~~ 34 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALAL 34 (188)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3889999999999875443
No 278
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.36 E-value=0.012 Score=60.66 Aligned_cols=150 Identities=15% Similarity=0.098 Sum_probs=81.8
Q ss_pred HHHHHHHHHHh-----cC----CcEEEEccCCCchhHHhHHHHHHhh-hcCCCceEEEEEcCcHHHHHHHHHHHHHHhcc
Q 011079 145 PIQEESIPIAL-----TG----SDILARAKNGTGKTAAFCIPALEKI-DQDNNVIQVVILVPTRELALQTSQVCKELGKH 214 (494)
Q Consensus 145 ~~Q~~~i~~~~-----~~----~~~ii~~~TGsGKT~~~~~~~l~~l-~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~ 214 (494)
|+|.-.+-.++ .+ +.+++.-+=|.|||+.....++..+ .....+..++++++++.-|..+...++.+...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 46666666555 12 3478888999999986554444443 33445568899999999999988888877654
Q ss_pred CCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcC--CccccccceEEecccccccCCCcHHHHHHHHHHCCC
Q 011079 215 LNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG--VCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPA 292 (494)
Q Consensus 215 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~--~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~ 292 (494)
..... ..... .... .....|..-..+.++..+... ...-.+.+++|+||+|.+.+......+..-....+
T Consensus 81 ~~~l~-~~~~~-----~~~~-~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~r~- 152 (477)
T PF03354_consen 81 SPELR-KRKKP-----KIIK-SNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGARP- 152 (477)
T ss_pred Chhhc-cchhh-----hhhh-hhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhccCC-
Confidence 21110 00000 0000 011233333223332222221 22234578999999998866444444444444443
Q ss_pred CCcEEE-EEee
Q 011079 293 NRQILM-FSAT 302 (494)
Q Consensus 293 ~~~~i~-~SAT 302 (494)
+.+++. .||.
T Consensus 153 ~pl~~~ISTag 163 (477)
T PF03354_consen 153 NPLIIIISTAG 163 (477)
T ss_pred CceEEEEeCCC
Confidence 444433 4443
No 279
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.36 E-value=0.019 Score=57.73 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=22.8
Q ss_pred CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEE
Q 011079 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVIL 194 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil 194 (494)
..++|.|++|+|||+. +..++..+........++++
T Consensus 56 ~~~lI~G~~GtGKT~l-~~~v~~~l~~~~~~~~~v~i 91 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT-VKKVFEELEEIAVKVVYVYI 91 (394)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHHhcCCcEEEEE
Confidence 4599999999999997 33344444333323344554
No 280
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.34 E-value=0.033 Score=55.07 Aligned_cols=42 Identities=17% Similarity=0.265 Sum_probs=26.5
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEee
Q 011079 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSAT 302 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 302 (494)
.....+|||||+|.|.. .-...+.+++..-+....+|++|..
T Consensus 139 ~~~~kVviIDead~m~~-~aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 139 EGGWRVVIVDTADEMNA-NAANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred cCCCEEEEEechHhcCH-HHHHHHHHHHhcCCCCeEEEEEECC
Confidence 45688999999998743 3344555556655445555555444
No 281
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.34 E-value=0.048 Score=57.49 Aligned_cols=114 Identities=17% Similarity=0.216 Sum_probs=56.0
Q ss_pred EEEEccCCCchhHHhHHHHHHhhhcC-CCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCC-hHHHHHHhcC
Q 011079 160 ILARAKNGTGKTAAFCIPALEKIDQD-NNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTS-LKDDIMRLYQ 237 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~-~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~ 237 (494)
+|+.||.|+|||+++...+ ..+... +.... -|-. ...|.++.......+..+.|... .-++++.
T Consensus 41 yLf~Gp~G~GKtt~A~~la-k~l~c~~~~~~~---~c~~-------c~~c~~i~~g~~~d~~eid~~s~~~v~~ir~--- 106 (576)
T PRK14965 41 FLFTGARGVGKTSTARILA-KALNCEQGLTAE---PCNV-------CPPCVEITEGRSVDVFEIDGASNTGVDDIRE--- 106 (576)
T ss_pred EEEECCCCCCHHHHHHHHH-HhhcCCCCCCCC---CCCc-------cHHHHHHhcCCCCCeeeeeccCccCHHHHHH---
Confidence 6899999999999854433 333211 10000 0111 23344444444444544444322 1112221
Q ss_pred CCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 011079 238 PVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (494)
Q Consensus 238 ~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 300 (494)
+....... ....+++++||||+|.|.... ...+.+.+..-++...+|+.|
T Consensus 107 -----------l~~~~~~~-p~~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 107 -----------LRENVKYL-PSRSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred -----------HHHHHHhc-cccCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 22222222 224678999999999875432 334455555545555555444
No 282
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.32 E-value=0.024 Score=56.91 Aligned_cols=19 Identities=32% Similarity=0.307 Sum_probs=15.8
Q ss_pred EEEEccCCCchhHHhHHHH
Q 011079 160 ILARAKNGTGKTAAFCIPA 178 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~ 178 (494)
++++||.|+|||+++...+
T Consensus 41 ~lf~Gp~G~GKtt~A~~~a 59 (397)
T PRK14955 41 YIFSGLRGVGKTTAARVFA 59 (397)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 8899999999999865443
No 283
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.32 E-value=0.061 Score=57.07 Aligned_cols=147 Identities=18% Similarity=0.256 Sum_probs=89.5
Q ss_pred HHHCCCCCCcHHHHHHHHHHhcCC--cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHh
Q 011079 135 IFEKGFERPSPIQEESIPIALTGS--DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELG 212 (494)
Q Consensus 135 l~~~~~~~~~~~Q~~~i~~~~~~~--~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~ 212 (494)
+..........-|.+.+..++..+ -+++.|.-|=|||.+.-+.+........ ..+++|.+|+.+-+..+.+.+.+-.
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~-~~~iiVTAP~~~nv~~Lf~fa~~~l 285 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAG-SVRIIVTAPTPANVQTLFEFAGKGL 285 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcC-CceEEEeCCCHHHHHHHHHHHHHhH
Confidence 333333344445555666666654 4889999999999887666533322222 4588999999999888888777666
Q ss_pred ccCCcEEEEEECC-CChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCC
Q 011079 213 KHLNIQVMVTTGG-TSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLP 291 (494)
Q Consensus 213 ~~~~~~~~~~~g~-~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~ 291 (494)
...|.+..+.... .... ........|=|.+|.... ..-+++|||||=.+ -.+.+.+++...+
T Consensus 286 ~~lg~~~~v~~d~~g~~~---~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaI----plplL~~l~~~~~ 348 (758)
T COG1444 286 EFLGYKRKVAPDALGEIR---EVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAI----PLPLLHKLLRRFP 348 (758)
T ss_pred HHhCCcccccccccccee---eecCCceeEEeeCcchhc----------ccCCEEEEehhhcC----ChHHHHHHHhhcC
Confidence 6665443221111 0000 000122346666665432 11689999999765 4666777766543
Q ss_pred CCCcEEEEEeec
Q 011079 292 ANRQILMFSATF 303 (494)
Q Consensus 292 ~~~~~i~~SATl 303 (494)
.++||.|+
T Consensus 349 ----rv~~sTTI 356 (758)
T COG1444 349 ----RVLFSTTI 356 (758)
T ss_pred ----ceEEEeee
Confidence 58889996
No 284
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.29 E-value=0.0068 Score=50.29 Aligned_cols=14 Identities=50% Similarity=0.648 Sum_probs=12.8
Q ss_pred EEEEccCCCchhHH
Q 011079 160 ILARAKNGTGKTAA 173 (494)
Q Consensus 160 ~ii~~~TGsGKT~~ 173 (494)
+++.||+|+|||+.
T Consensus 1 ill~G~~G~GKT~l 14 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL 14 (132)
T ss_dssp EEEESSTTSSHHHH
T ss_pred CEEECcCCCCeeHH
Confidence 58999999999986
No 285
>PF13173 AAA_14: AAA domain
Probab=96.28 E-value=0.043 Score=45.46 Aligned_cols=37 Identities=16% Similarity=0.317 Sum_probs=26.3
Q ss_pred ccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEee
Q 011079 262 DCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSAT 302 (494)
Q Consensus 262 ~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 302 (494)
.-.+|+|||+|.+. ++...++.+.... .+.++++ |++
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~-~~~~ii~-tgS 97 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNG-PNIKIIL-TGS 97 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhc-cCceEEE-Ecc
Confidence 56789999999874 5777777777755 4566555 444
No 286
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.25 E-value=0.013 Score=62.09 Aligned_cols=43 Identities=21% Similarity=0.385 Sum_probs=38.1
Q ss_pred ccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEeecC
Q 011079 262 DCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFP 304 (494)
Q Consensus 262 ~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SATl~ 304 (494)
+.-++|+|+.|.+.+......+..+++..|++..+++.|-+-|
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 3468999999999998888999999999999999999998854
No 287
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.24 E-value=0.014 Score=55.06 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhHHhH
Q 011079 158 SDILARAKNGTGKTAAFC 175 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (494)
.++++.||+|+|||+.+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 358999999999998743
No 288
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.23 E-value=0.02 Score=57.91 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=24.1
Q ss_pred cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc
Q 011079 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (494)
.+++.|++|+|||... .++...+.....+..++++.
T Consensus 138 ~l~l~G~~G~GKThL~-~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL-HAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred eEEEECCCCCcHHHHH-HHHHHHHHHhCCCCcEEEEE
Confidence 4899999999999863 44555554433344667664
No 289
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.23 E-value=0.053 Score=56.79 Aligned_cols=20 Identities=35% Similarity=0.305 Sum_probs=16.2
Q ss_pred cEEEEccCCCchhHHhHHHH
Q 011079 159 DILARAKNGTGKTAAFCIPA 178 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~ 178 (494)
.+|+.||.|+|||+++...+
T Consensus 40 a~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 37899999999999865444
No 290
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.22 E-value=0.11 Score=50.36 Aligned_cols=55 Identities=15% Similarity=0.316 Sum_probs=33.6
Q ss_pred ccccceEEecccccccC-CCcHHHHHHHHHHC------CCCCcEEEEEeecCcchHHHHHhh
Q 011079 260 LKDCSMLVMDEADKLLS-PEFQPSVEQLIRFL------PANRQILMFSATFPVTVKDFKDKY 314 (494)
Q Consensus 260 l~~~~~iViDEah~~~~-~~~~~~~~~~~~~~------~~~~~~i~~SATl~~~~~~~~~~~ 314 (494)
..++++||+|=+-++.. ......+.++.+.+ .+...++.++||...+.......+
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 35689999999887643 22334555554432 234457899999765444444444
No 291
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.20 E-value=0.044 Score=56.86 Aligned_cols=40 Identities=10% Similarity=0.120 Sum_probs=25.4
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 011079 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 300 (494)
.....++||||+|+|... -...+.+.+..-+....+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~-a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQ-SFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 456789999999997543 2344455555555555555544
No 292
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.18 E-value=0.011 Score=55.08 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=38.1
Q ss_pred ccCCCCcccccCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCC
Q 011079 115 TATKGNEFEDYFLKRELLMGIFE-KGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNN 187 (494)
Q Consensus 115 ~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~ 187 (494)
.+....+|+++++++-+.+.+.. .|. ++|.||||||||+. +.+++.++.+...
T Consensus 101 Ip~~i~~~e~LglP~i~~~~~~~~~GL-------------------ILVTGpTGSGKSTT-lAamId~iN~~~~ 154 (353)
T COG2805 101 IPSKIPTLEELGLPPIVRELAESPRGL-------------------ILVTGPTGSGKSTT-LAAMIDYINKHKA 154 (353)
T ss_pred cCccCCCHHHcCCCHHHHHHHhCCCce-------------------EEEeCCCCCcHHHH-HHHHHHHHhccCC
Confidence 34555678888888877663332 132 89999999999998 6778888876543
No 293
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.18 E-value=0.026 Score=52.00 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=25.9
Q ss_pred cccceEEecccccccCCCcHHHHHHHHHHCCCCCc-EEEEEeecC
Q 011079 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQ-ILMFSATFP 304 (494)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~-~i~~SATl~ 304 (494)
...++|||||+|.+.. .....+..++........ +++++++.+
T Consensus 89 ~~~~~liiDdi~~l~~-~~~~~L~~~~~~~~~~~~~~vl~~~~~~ 132 (227)
T PRK08903 89 PEAELYAVDDVERLDD-AQQIALFNLFNRVRAHGQGALLVAGPAA 132 (227)
T ss_pred ccCCEEEEeChhhcCc-hHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 3567899999998743 334445555544433333 466777654
No 294
>PLN03025 replication factor C subunit; Provisional
Probab=96.18 E-value=0.064 Score=52.27 Aligned_cols=40 Identities=15% Similarity=0.323 Sum_probs=24.8
Q ss_pred cccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEee
Q 011079 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSAT 302 (494)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 302 (494)
...++|||||+|.|... -...+...+...+....++ ++++
T Consensus 98 ~~~kviiiDE~d~lt~~-aq~aL~~~lE~~~~~t~~i-l~~n 137 (319)
T PLN03025 98 GRHKIVILDEADSMTSG-AQQALRRTMEIYSNTTRFA-LACN 137 (319)
T ss_pred CCeEEEEEechhhcCHH-HHHHHHHHHhcccCCceEE-EEeC
Confidence 35789999999987532 3445555555544445444 4444
No 295
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.17 E-value=0.15 Score=44.69 Aligned_cols=54 Identities=11% Similarity=0.285 Sum_probs=29.8
Q ss_pred cccceEEeccccccc-CCCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhh
Q 011079 261 KDCSMLVMDEADKLL-SPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKY 314 (494)
Q Consensus 261 ~~~~~iViDEah~~~-~~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~ 314 (494)
..+++||+|...... +......+..+......+.-++.++|+...+..+....+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 467889999988642 222333444444433445556677776554444444444
No 296
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.14 E-value=0.07 Score=55.54 Aligned_cols=40 Identities=10% Similarity=0.172 Sum_probs=24.8
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 011079 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 300 (494)
..++.++||||+|.|.... ...+.+.+..-+....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~a-~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHH-HHHHHHHHhCCCCCEEEEEEe
Confidence 4568899999999875432 233444455544555555544
No 297
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.016 Score=55.85 Aligned_cols=64 Identities=28% Similarity=0.402 Sum_probs=35.3
Q ss_pred cccceEEecccccccCC-----Cc--HHHHH-HHH-------HHCCCCCcEEEEEee-cCcchHHHHHhhcCCCeEEEec
Q 011079 261 KDCSMLVMDEADKLLSP-----EF--QPSVE-QLI-------RFLPANRQILMFSAT-FPVTVKDFKDKYLQKPYVINLM 324 (494)
Q Consensus 261 ~~~~~iViDEah~~~~~-----~~--~~~~~-~~~-------~~~~~~~~~i~~SAT-l~~~~~~~~~~~~~~~~~~~~~ 324 (494)
-..+.|+|||+|.+... ++ ...++ +++ ..+.....++++-|| +|-++.+.+.+-+.+-.++.++
T Consensus 303 yAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP 382 (491)
T KOG0738|consen 303 YAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLP 382 (491)
T ss_pred hCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCC
Confidence 34689999999987531 11 11111 111 112222346667777 5767777777666655555544
No 298
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.11 E-value=0.072 Score=56.23 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=55.7
Q ss_pred EEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCCh-HHHHHHhcCC
Q 011079 160 ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSL-KDDIMRLYQP 238 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~ 238 (494)
+|++||.|+|||+++...+-...-..... ..-+.-++.. .-.....|+.+......++..+.+.... -++++.
T Consensus 41 ~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~-~~~~~~~~~~-~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~---- 114 (620)
T PRK14954 41 YIFSGLRGVGKTTAARVFAKAVNCQRMID-DPVYLQEVTE-PCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQ---- 114 (620)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCcCC-ccccccccCC-CCccCHHHHHHhccCCCCeEEecccccCCHHHHHH----
Confidence 88999999999998654433222111000 0000000000 0011234555544444555555443222 222222
Q ss_pred CeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 011079 239 VHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (494)
Q Consensus 239 ~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 300 (494)
+.+.+... ..+....+|||||+|.|.... ...+.+.+..-+...-+|+++
T Consensus 115 ----------l~e~~~~~-P~~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 115 ----------LRENVRYG-PQKGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred ----------HHHHHHhh-hhcCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 11112111 235678999999999885422 223333344433344344443
No 299
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.10 E-value=0.022 Score=55.03 Aligned_cols=65 Identities=22% Similarity=0.245 Sum_probs=41.5
Q ss_pred HHHHCCCCCCcHHHHHHHHHHh-cCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHH
Q 011079 134 GIFEKGFERPSPIQEESIPIAL-TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELA 201 (494)
Q Consensus 134 ~l~~~~~~~~~~~Q~~~i~~~~-~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la 201 (494)
.+.+.|. +++.|.+.+..+. .+.+++|+|+||||||+. +-.++..+.......+++++-.+.+|.
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~~~~rivtiEd~~El~ 187 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASAPEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCCCCceEEEecCCcccc
Confidence 3444443 5567777766555 456799999999999996 455555553322334677766666663
No 300
>PRK06921 hypothetical protein; Provisional
Probab=96.09 E-value=0.02 Score=53.97 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=23.6
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (494)
+..+++.|++|+|||... .++...+.... +..++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa-~aia~~l~~~~-g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLL-TAAANELMRKK-GVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHHhhhc-CceEEEEE
Confidence 456999999999999763 34444444321 23556554
No 301
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.09 E-value=0.059 Score=52.42 Aligned_cols=40 Identities=15% Similarity=0.271 Sum_probs=27.5
Q ss_pred cccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 011079 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (494)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 300 (494)
...++|||||+|.+........+..++...+.+.++|+.|
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 3568999999998844445556666677766666665544
No 302
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.09 E-value=0.024 Score=53.78 Aligned_cols=39 Identities=31% Similarity=0.307 Sum_probs=26.8
Q ss_pred hcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc
Q 011079 155 LTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (494)
Q Consensus 155 ~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (494)
..|.-+++.|++|+|||+.....+....... +..+++++
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~--g~~vl~iS 66 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQH--GVRVGTIS 66 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhc--CceEEEEE
Confidence 3456689999999999987665555544331 33677776
No 303
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.08 E-value=0.013 Score=63.03 Aligned_cols=69 Identities=17% Similarity=0.149 Sum_probs=51.1
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCC-CceEEEEEcCcHHHHHHHHHHHHHHh
Q 011079 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN-NVIQVVILVPTRELALQTSQVCKELG 212 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~-~~~~~lil~P~~~la~q~~~~~~~~~ 212 (494)
.+++-|.+++... ...++|.|..|||||.+.+.-+...+...+ ...++|+++-|+..|..+.+.+..+.
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 4788899998753 456888899999999985555554443322 34579999999999998877776553
No 304
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.07 E-value=0.075 Score=55.75 Aligned_cols=19 Identities=47% Similarity=0.412 Sum_probs=15.5
Q ss_pred EEEEccCCCchhHHhHHHH
Q 011079 160 ILARAKNGTGKTAAFCIPA 178 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~ 178 (494)
++++||.|+|||+++-..+
T Consensus 41 yLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7889999999999855443
No 305
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.06 E-value=0.037 Score=57.09 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=14.6
Q ss_pred EEEEccCCCchhHHhHH
Q 011079 160 ILARAKNGTGKTAAFCI 176 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~ 176 (494)
+++.||.|+|||+.+..
T Consensus 39 ~Lf~GppGtGKTTlA~~ 55 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL 55 (504)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 59999999999998543
No 306
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.04 E-value=0.093 Score=54.75 Aligned_cols=20 Identities=30% Similarity=0.262 Sum_probs=16.0
Q ss_pred cEEEEccCCCchhHHhHHHH
Q 011079 159 DILARAKNGTGKTAAFCIPA 178 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~ 178 (494)
.+++.||.|+|||+.+...+
T Consensus 40 A~Lf~GP~GvGKTTlA~~lA 59 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKIFA 59 (605)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 38899999999999755433
No 307
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.01 E-value=0.029 Score=60.15 Aligned_cols=70 Identities=20% Similarity=0.195 Sum_probs=49.9
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcC-CCceEEEEEcCcHHHHHHHHHHHHHHh
Q 011079 141 ERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD-NNVIQVVILVPTRELALQTSQVCKELG 212 (494)
Q Consensus 141 ~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~-~~~~~~lil~P~~~la~q~~~~~~~~~ 212 (494)
..+++-|.+++-.- ...++|.|..|||||++..--+...+... ..+.++|+++.++..|..+.+.+....
T Consensus 195 ~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 47899999998643 34588999999999998443333223222 234489999999999988887766543
No 308
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.96 E-value=0.036 Score=56.67 Aligned_cols=17 Identities=35% Similarity=0.413 Sum_probs=14.7
Q ss_pred EEEEccCCCchhHHhHH
Q 011079 160 ILARAKNGTGKTAAFCI 176 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~ 176 (494)
++++||+|+|||+.+-.
T Consensus 39 ~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 39 YIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 79999999999997544
No 309
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.95 E-value=0.082 Score=56.88 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=16.2
Q ss_pred EEEEccCCCchhHHhHHHHHHhh
Q 011079 160 ILARAKNGTGKTAAFCIPALEKI 182 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l 182 (494)
++|.|+||+|||++. ..++..+
T Consensus 784 LYIyG~PGTGKTATV-K~VLrEL 805 (1164)
T PTZ00112 784 LYISGMPGTGKTATV-YSVIQLL 805 (1164)
T ss_pred EEEECCCCCCHHHHH-HHHHHHH
Confidence 469999999999984 3344444
No 310
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.95 E-value=0.049 Score=56.22 Aligned_cols=40 Identities=10% Similarity=0.213 Sum_probs=26.2
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 011079 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 300 (494)
...+.++||||||.|... -...+.+.+..-++...+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~-A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKE-AFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHH-HHHHHHHHHhhcCCceEEEEEE
Confidence 467899999999988532 3344555555555666555544
No 311
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.93 E-value=0.032 Score=64.26 Aligned_cols=123 Identities=20% Similarity=0.152 Sum_probs=73.9
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEE
Q 011079 143 PSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVT 222 (494)
Q Consensus 143 ~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~ 222 (494)
+++-|.++|. ..+++++|.|..|||||.+.+--++..+..+....++|+||=|+..|..+.+.+.+.....-..
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~---- 75 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKALQQ---- 75 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhc----
Confidence 5788999997 3678899999999999999666666655544333469999999999877766555433211000
Q ss_pred ECCCChHHHHHHhcCCCeEEEEchHHHHH-hHhcCCccc-cccceEEeccccc
Q 011079 223 TGGTSLKDDIMRLYQPVHLLVGTPGRILD-LSKKGVCIL-KDCSMLVMDEADK 273 (494)
Q Consensus 223 ~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~-~~~~~~~~l-~~~~~iViDEah~ 273 (494)
..........+..-...-|+|...+.. +++.....+ -+..+=|+||...
T Consensus 76 --~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 76 --EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred --CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 001111112222234567899998865 333321111 1124445887764
No 312
>PRK04195 replication factor C large subunit; Provisional
Probab=95.90 E-value=0.084 Score=54.58 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchhHHh
Q 011079 158 SDILARAKNGTGKTAAF 174 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (494)
+.+++.||+|+|||+.+
T Consensus 40 ~~lLL~GppG~GKTtla 56 (482)
T PRK04195 40 KALLLYGPPGVGKTSLA 56 (482)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999873
No 313
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.90 E-value=0.031 Score=52.76 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=17.6
Q ss_pred CcEEEEccCCCchhHHhHHHHHH
Q 011079 158 SDILARAKNGTGKTAAFCIPALE 180 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~ 180 (494)
.+++++|+|+.|||+..-.+.-.
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~ 84 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRL 84 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHH
Confidence 36999999999999975444433
No 314
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.90 E-value=0.028 Score=53.61 Aligned_cols=44 Identities=25% Similarity=0.249 Sum_probs=25.3
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc--CcHHHH
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELA 201 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la 201 (494)
++.++++||||+|||+.....+.......+. .++.++. |.+.-+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~-~~V~li~~D~~r~~a 239 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGN-KKVALITTDTYRIGA 239 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCC-CeEEEEECCccchhH
Confidence 3458899999999999755433333222121 2455444 444444
No 315
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=95.89 E-value=0.0069 Score=68.79 Aligned_cols=94 Identities=20% Similarity=0.359 Sum_probs=76.6
Q ss_pred cEEEEecChhHHHHHHHHHHHcC-CcEEEEccCCC-----------HHHHHHHHHHhhcCCccEEEEcCcccccCCCCCC
Q 011079 359 QSIIFCNSVNRVELLAKKITELG-YSCFYIHAKML-----------QDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAV 426 (494)
Q Consensus 359 ~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~-----------~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v 426 (494)
..|+|+.....+..+++.+.... ..+..+.|.+. ...++.++..|....+.+|++|.++..|+|++-+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 46899999999998888887652 22333444322 2236788999999999999999999999999999
Q ss_pred CEEEEcCCCCCHHHHHHHhccccCCC
Q 011079 427 NVVINFDFPKNSETYLHRVGRSGRFG 452 (494)
Q Consensus 427 ~~VI~~~~p~s~~~~~Qr~GRagR~g 452 (494)
+.|+.++.|.....|+|..||+-+.+
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999987653
No 316
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.88 E-value=0.055 Score=56.32 Aligned_cols=131 Identities=15% Similarity=0.151 Sum_probs=78.6
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccC--CcEEEEEECCCChHHHHHH
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHL--NIQVMVTTGGTSLKDDIMR 234 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~ 234 (494)
.+-.++..|=-.|||.... +++..+...-.+.++++++|.+..+..+.+.+....+.. +..+....| ..+ ...
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I---~i~ 328 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI---SFS 328 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE---EEE
Confidence 4557888899999999755 566555544446689999999999988887777654422 111111222 111 001
Q ss_pred hcCC--CeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHC-CCCCcEEEEEee
Q 011079 235 LYQP--VHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFL-PANRQILMFSAT 302 (494)
Q Consensus 235 ~~~~--~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~-~~~~~~i~~SAT 302 (494)
+.++ ..|.+.+. ...+...-..++++|+|||+.+.... +..++..+ ..+.++|++|.|
T Consensus 329 f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~a----l~~ilp~l~~~n~k~I~ISS~ 389 (738)
T PHA03368 329 FPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPDA----VQTIMGFLNQTNCKIIFVSST 389 (738)
T ss_pred ecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHHH----HHHHHHHHhccCccEEEEecC
Confidence 1112 25555532 11222334579999999999875433 33333222 247889999988
No 317
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.88 E-value=0.053 Score=51.87 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhHHh
Q 011079 159 DILARAKNGTGKTAAF 174 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (494)
.+|++||+|+|||+.+
T Consensus 164 SmIlWGppG~GKTtlA 179 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLA 179 (554)
T ss_pred ceEEecCCCCchHHHH
Confidence 4899999999999864
No 318
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.87 E-value=0.093 Score=48.40 Aligned_cols=52 Identities=19% Similarity=0.089 Sum_probs=32.1
Q ss_pred cCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011079 156 TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL 211 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (494)
.+..+++.|++|+|||+.....+...+.. +.++++++.. +-..+..+.+..+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~---g~~~~yi~~e-~~~~~~~~~~~~~ 74 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQN---GYSVSYVSTQ-LTTTEFIKQMMSL 74 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEEeCC-CCHHHHHHHHHHh
Confidence 35568999999999999755555544333 2367888733 2233444444443
No 319
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.86 E-value=0.12 Score=54.61 Aligned_cols=18 Identities=33% Similarity=0.349 Sum_probs=15.0
Q ss_pred EEEEccCCCchhHHhHHH
Q 011079 160 ILARAKNGTGKTAAFCIP 177 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~ 177 (494)
+|+.||.|+|||+.+...
T Consensus 41 ~Lf~Gp~G~GKTtlA~~l 58 (585)
T PRK14950 41 YLFTGPRGVGKTSTARIL 58 (585)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999985443
No 320
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.86 E-value=0.02 Score=51.62 Aligned_cols=16 Identities=31% Similarity=0.345 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhHHh
Q 011079 159 DILARAKNGTGKTAAF 174 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (494)
+++++||+|+|||+.+
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 4899999999999853
No 321
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.86 E-value=0.1 Score=54.67 Aligned_cols=146 Identities=12% Similarity=0.104 Sum_probs=79.2
Q ss_pred cHHHHHHHHHHh---cCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc---
Q 011079 144 SPIQEESIPIAL---TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI--- 217 (494)
Q Consensus 144 ~~~Q~~~i~~~~---~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~--- 217 (494)
.|.=.+-|+.+. ..+-.++.+|=|.|||.+..+.+...+... +.+++|.+|...-+.++.+.++...+..+.
T Consensus 171 ~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~--Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~ 248 (752)
T PHA03333 171 SPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFL--EIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPW 248 (752)
T ss_pred ChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhc--CCeEEEECCChhhHHHHHHHHHHHHHHhccccc
Confidence 344334444443 345588899999999998655444333222 458999999998888887777766653320
Q ss_pred -----EEEEEECCCCh---HHHHHHhc-CCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHH
Q 011079 218 -----QVMVTTGGTSL---KDDIMRLY-QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIR 288 (494)
Q Consensus 218 -----~~~~~~g~~~~---~~~~~~~~-~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~ 288 (494)
.+....|+... ... .... ....|.+++.. .+...-.+++++|+|||..+.. +.+..++.
T Consensus 249 fp~~~~iv~vkgg~E~I~f~~p-~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~~----~~l~aIlP 316 (752)
T PHA03333 249 FPEEFKIVTLKGTDENLEYISD-PAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVNP----GALLSVLP 316 (752)
T ss_pred cCCCceEEEeeCCeeEEEEecC-cccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCCH----HHHHHHHH
Confidence 11112221110 000 0000 01233333222 1122234679999999998743 34444544
Q ss_pred HCC-CCCcEEEEEeec
Q 011079 289 FLP-ANRQILMFSATF 303 (494)
Q Consensus 289 ~~~-~~~~~i~~SATl 303 (494)
.+. .+.+++++|.+-
T Consensus 317 ~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 317 LMAVKGTKQIHISSPV 332 (752)
T ss_pred HHccCCCceEEEeCCC
Confidence 443 356677777774
No 322
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.85 E-value=0.074 Score=46.62 Aligned_cols=102 Identities=15% Similarity=0.122 Sum_probs=54.1
Q ss_pred EEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCCC
Q 011079 160 ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPV 239 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 239 (494)
.++.||+.||||.-.+..+-.+... +.++++..|...- ..+...+...-|.. ..
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~~---g~~v~vfkp~iD~-------------R~~~~~V~Sr~G~~----------~~ 60 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKEA---GMKVLVFKPAIDT-------------RYGVGKVSSRIGLS----------SE 60 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHHc---CCeEEEEeccccc-------------ccccceeeeccCCc----------cc
Confidence 6899999999999844444333322 2377888875321 01111111111111 12
Q ss_pred eEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHH
Q 011079 240 HLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRF 289 (494)
Q Consensus 240 ~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~ 289 (494)
-++|-.+..+...+..... ...+++|.||||+-+ +...-..+.++...
T Consensus 61 A~~i~~~~~i~~~i~~~~~-~~~~~~v~IDEaQF~-~~~~v~~l~~lad~ 108 (201)
T COG1435 61 AVVIPSDTDIFDEIAALHE-KPPVDCVLIDEAQFF-DEELVYVLNELADR 108 (201)
T ss_pred ceecCChHHHHHHHHhccc-CCCcCEEEEehhHhC-CHHHHHHHHHHHhh
Confidence 3555566666665554322 222889999999964 33333334444433
No 323
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.81 E-value=0.066 Score=64.08 Aligned_cols=61 Identities=26% Similarity=0.406 Sum_probs=43.9
Q ss_pred CCcHHHHHHHHHHhcCCc--EEEEccCCCchhHHhH---HHHHHhhhcCCCceEEEEEcCcHHHHHHH
Q 011079 142 RPSPIQEESIPIALTGSD--ILARAKNGTGKTAAFC---IPALEKIDQDNNVIQVVILVPTRELALQT 204 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~~~--~ii~~~TGsGKT~~~~---~~~l~~l~~~~~~~~~lil~P~~~la~q~ 204 (494)
.+++.|.+|+..++.+.+ ++|.|..|+|||+... -++.+.+... +..++.++||-..+..+
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~--g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESE--QLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhc--CCeEEEEeChHHHHHHH
Confidence 689999999999987644 7889999999998741 2333333322 34688889997665443
No 324
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.78 E-value=0.028 Score=54.81 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=25.8
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 011079 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 300 (494)
...+.+|||||||.|.. +-...+.+.+..-+.+..+|+.+
T Consensus 107 ~~~~kviiidead~mt~-~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 107 EGGYKVVIIDEADKLTE-DAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCCceEEEeCcHHHHhH-HHHHHHHHHhccCCCCeEEEEEc
Confidence 36789999999998743 33455555555555555544444
No 325
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.78 E-value=0.062 Score=52.82 Aligned_cols=40 Identities=15% Similarity=0.247 Sum_probs=26.0
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 011079 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 300 (494)
.....+|||||||.|... -...+.+.+..-+.+..+|++|
T Consensus 139 ~g~~rVviIDeAd~l~~~-aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRN-AANAILKTLEEPPARALFILIS 178 (351)
T ss_pred cCCceEEEEEchhhcCHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 456889999999998433 2344555666555555555554
No 326
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.77 E-value=0.13 Score=49.90 Aligned_cols=39 Identities=21% Similarity=0.379 Sum_probs=24.3
Q ss_pred cccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 011079 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (494)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 300 (494)
....+|++||+|.+... ....+..++...+....+|+.+
T Consensus 101 ~~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 101 APFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CCceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 34679999999987432 2344555555555566555543
No 327
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.76 E-value=0.043 Score=52.70 Aligned_cols=66 Identities=29% Similarity=0.384 Sum_probs=40.7
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHh-cCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHH
Q 011079 133 MGIFEKGFERPSPIQEESIPIAL-TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELA 201 (494)
Q Consensus 133 ~~l~~~~~~~~~~~Q~~~i~~~~-~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la 201 (494)
+.+.+.|. +.+-|.+.+..+. .+++++++|+||||||+. +..++..+.......+++++-...++.
T Consensus 109 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 109 DDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKNDPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccCCCceEEEECCchhhc
Confidence 34444442 4455555555444 456799999999999996 445555554422233677777777763
No 328
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.74 E-value=0.024 Score=52.26 Aligned_cols=132 Identities=17% Similarity=0.173 Sum_probs=65.1
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhc-CCCceEEEEEcCcHHHHHHHHHHHHHHhccC-----CcEEEEEECCCChHH
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEKIDQ-DNNVIQVVILVPTRELALQTSQVCKELGKHL-----NIQVMVTTGGTSLKD 230 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~P~~~la~q~~~~~~~~~~~~-----~~~~~~~~g~~~~~~ 230 (494)
|..++|.|++|+|||+-....+.+.+.. +. ++++++-. +-..++.+.++.+.... .-.+..+........
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge---~vlyvs~e-e~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGE---KVLYVSFE-EPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT-----EEEEESS-S-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC---cEEEEEec-CCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 4569999999999999877777777665 43 67887722 22344455555443111 000111111111000
Q ss_pred HHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccC----CCcHHHHHHHHHHCCCCCcEEEEEeec
Q 011079 231 DIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS----PEFQPSVEQLIRFLPANRQILMFSATF 303 (494)
Q Consensus 231 ~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~----~~~~~~~~~~~~~~~~~~~~i~~SATl 303 (494)
. . -...+.+...+..... -.+.+++|||-...+.. ..+...+..+...+.....+.++++..
T Consensus 95 ~--------~--~~~~~~l~~~i~~~i~-~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~~~ 160 (226)
T PF06745_consen 95 W--------S--PNDLEELLSKIREAIE-ELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTSEM 160 (226)
T ss_dssp ---------T--SCCHHHHHHHHHHHHH-HHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred c--------c--ccCHHHHHHHHHHHHH-hcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 0 0 1122233332222111 12238999998887621 224455566666554444555666663
No 329
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.72 E-value=0.03 Score=56.98 Aligned_cols=69 Identities=25% Similarity=0.231 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcC--CcEEEEccCCCchhHHhHHHHHHhhhcCC---CceEEEEEcCcHHHHHHHHHHHHHHhcc
Q 011079 146 IQEESIPIALTG--SDILARAKNGTGKTAAFCIPALEKIDQDN---NVIQVVILVPTRELALQTSQVCKELGKH 214 (494)
Q Consensus 146 ~Q~~~i~~~~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~---~~~~~lil~P~~~la~q~~~~~~~~~~~ 214 (494)
+|.+==..|... +-+||.|..|||||++++.-+.-.+.... .+..|||+.|++..+.-+.+++.+++..
T Consensus 213 IQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPeLGe~ 286 (747)
T COG3973 213 IQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPELGEE 286 (747)
T ss_pred hhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchhhccC
Confidence 344443444433 44899999999999996543333332211 2224999999999999999999988753
No 330
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.70 E-value=0.035 Score=53.69 Aligned_cols=66 Identities=26% Similarity=0.320 Sum_probs=41.8
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHH-hcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHH
Q 011079 132 LMGIFEKGFERPSPIQEESIPIA-LTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTREL 200 (494)
Q Consensus 132 ~~~l~~~~~~~~~~~Q~~~i~~~-~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~l 200 (494)
++.+.+.|+ +.+.|.+.+..+ ..+++++++|+||||||+. +..++..+.......+++++-.+.++
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 344545454 456677777654 4566799999999999975 44455443222223467777777665
No 331
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.69 E-value=0.087 Score=53.64 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=24.9
Q ss_pred cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcC
Q 011079 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVP 196 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 196 (494)
.+++.|++|+|||.. +.++...+.....+.+++++..
T Consensus 132 ~l~lyG~~G~GKTHL-l~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 132 PLFIYGGVGLGKTHL-LQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred eEEEEcCCCCcHHHH-HHHHHHHHHHhCCCCeEEEEEH
Confidence 489999999999986 3444455544333446777654
No 332
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.68 E-value=0.087 Score=50.90 Aligned_cols=37 Identities=24% Similarity=0.281 Sum_probs=27.8
Q ss_pred CCCcHHHHHHHHHHh----cCC---cEEEEccCCCchhHHhHHH
Q 011079 141 ERPSPIQEESIPIAL----TGS---DILARAKNGTGKTAAFCIP 177 (494)
Q Consensus 141 ~~~~~~Q~~~i~~~~----~~~---~~ii~~~TGsGKT~~~~~~ 177 (494)
..++|+|..++..+. .++ -+++.||.|+||++.+...
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~l 46 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALAL 46 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHH
Confidence 457889988887765 333 3889999999999875443
No 333
>CHL00181 cbbX CbbX; Provisional
Probab=95.67 E-value=0.046 Score=52.19 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCchhHHhHH
Q 011079 157 GSDILARAKNGTGKTAAFCI 176 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~ 176 (494)
+.++++.||+|+|||+.+-.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 34589999999999997543
No 334
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.63 E-value=0.059 Score=56.23 Aligned_cols=36 Identities=14% Similarity=0.027 Sum_probs=22.9
Q ss_pred cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc
Q 011079 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (494)
.++|.|++|+|||.. +.++...+.....+.+++++.
T Consensus 316 pL~LyG~sGsGKTHL-L~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 316 PLFIYGESGLGKTHL-LHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred cEEEECCCCCCHHHH-HHHHHHHHHHhCCCCeEEEee
Confidence 389999999999975 334444444322334566655
No 335
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.62 E-value=0.069 Score=49.99 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=29.0
Q ss_pred cCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHH
Q 011079 156 TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQ 206 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~ 206 (494)
.+.++++.|++|+|||..+.....+ +... +.+|+ .+++.+++.++..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~-l~~~--g~sv~-f~~~~el~~~Lk~ 150 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE-LLKA--GISVL-FITAPDLLSKLKA 150 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH-HHHc--CCeEE-EEEHHHHHHHHHH
Confidence 5678999999999999874443333 3333 22344 4455566544443
No 336
>PF05729 NACHT: NACHT domain
Probab=95.61 E-value=0.094 Score=45.26 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=14.8
Q ss_pred cEEEEccCCCchhHHhHH
Q 011079 159 DILARAKNGTGKTAAFCI 176 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~ 176 (494)
-++|.|++|+|||+....
T Consensus 2 ~l~I~G~~G~GKStll~~ 19 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRK 19 (166)
T ss_pred EEEEECCCCCChHHHHHH
Confidence 478999999999997443
No 337
>PRK09183 transposase/IS protein; Provisional
Probab=95.58 E-value=0.13 Score=48.37 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=18.9
Q ss_pred HhcCCcEEEEccCCCchhHHhHHH
Q 011079 154 ALTGSDILARAKNGTGKTAAFCIP 177 (494)
Q Consensus 154 ~~~~~~~ii~~~TGsGKT~~~~~~ 177 (494)
+..+.++++.||+|+|||......
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHH
Confidence 446778999999999999864433
No 338
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.57 E-value=0.031 Score=60.40 Aligned_cols=68 Identities=18% Similarity=0.127 Sum_probs=50.4
Q ss_pred CcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcC-CCceEEEEEcCcHHHHHHHHHHHHHHh
Q 011079 143 PSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD-NNVIQVVILVPTRELALQTSQVCKELG 212 (494)
Q Consensus 143 ~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~-~~~~~~lil~P~~~la~q~~~~~~~~~ 212 (494)
+++-|.+++.. ...+++|.|..|||||.+.+.-+...+... ....++|+|+.|+..+..+.+.+.+..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 67889998865 345799999999999998655555555432 244578999999999988877666543
No 339
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.56 E-value=0.41 Score=45.75 Aligned_cols=130 Identities=18% Similarity=0.295 Sum_probs=74.8
Q ss_pred EEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCcEEEEE-ECCCChHHHHHHhc
Q 011079 160 ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVMVT-TGGTSLKDDIMRLY 236 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~ 236 (494)
++++|-.|+|||+.....+.. +.+.+ .+|++.+ --|+-|..+.+ .+++..|+.+..- .|..+..
T Consensus 142 il~vGVNG~GKTTTIaKLA~~-l~~~g--~~VllaA~DTFRAaAiEQL~---~w~er~gv~vI~~~~G~DpAa------- 208 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKY-LKQQG--KSVLLAAGDTFRAAAIEQLE---VWGERLGVPVISGKEGADPAA------- 208 (340)
T ss_pred EEEEecCCCchHhHHHHHHHH-HHHCC--CeEEEEecchHHHHHHHHHH---HHHHHhCCeEEccCCCCCcHH-------
Confidence 788999999999985443333 33332 2555555 45666643333 3333345555442 1221111
Q ss_pred CCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCC-CcHHHHHHHHHHCCCCC------cEEEEEeecCcchHH
Q 011079 237 QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSP-EFQPSVEQLIRFLPANR------QILMFSATFPVTVKD 309 (494)
Q Consensus 237 ~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~-~~~~~~~~~~~~~~~~~------~~i~~SATl~~~~~~ 309 (494)
| ..+-++. ..-.++++|++|=|-||.+. .+-..++++.+-+.+.. -++.+=||...+...
T Consensus 209 ----V-------afDAi~~--Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~ 275 (340)
T COG0552 209 ----V-------AFDAIQA--AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALS 275 (340)
T ss_pred ----H-------HHHHHHH--HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHH
Confidence 1 1122222 12467899999999998764 46677888877775544 344558998766666
Q ss_pred HHHhhc
Q 011079 310 FKDKYL 315 (494)
Q Consensus 310 ~~~~~~ 315 (494)
..+.|-
T Consensus 276 QAk~F~ 281 (340)
T COG0552 276 QAKIFN 281 (340)
T ss_pred HHHHHH
Confidence 555543
No 340
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.53 E-value=0.18 Score=47.67 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=21.5
Q ss_pred CcHHHHHHHHHHh----cCC-cEEEEccCCCchhHHhH
Q 011079 143 PSPIQEESIPIAL----TGS-DILARAKNGTGKTAAFC 175 (494)
Q Consensus 143 ~~~~Q~~~i~~~~----~~~-~~ii~~~TGsGKT~~~~ 175 (494)
+++.+.+++..+. .+. .+++.|++|+|||+...
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 3444455555443 223 48899999999999743
No 341
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.52 E-value=0.083 Score=52.54 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=17.9
Q ss_pred CcEEEEccCCCchhHHhHHHHHHhh
Q 011079 158 SDILARAKNGTGKTAAFCIPALEKI 182 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l 182 (494)
..++|.||+|+|||+.. ..++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 46999999999999873 4444444
No 342
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.51 E-value=0.029 Score=56.34 Aligned_cols=43 Identities=28% Similarity=0.395 Sum_probs=32.9
Q ss_pred CcHHHHHHHHHHhcCCc--EEEEccCCCchhHHhHHHHHHhhhcCC
Q 011079 143 PSPIQEESIPIALTGSD--ILARAKNGTGKTAAFCIPALEKIDQDN 186 (494)
Q Consensus 143 ~~~~Q~~~i~~~~~~~~--~ii~~~TGsGKT~~~~~~~l~~l~~~~ 186 (494)
+.+.|.+.+..+++... +++.||||||||+. +..++..+....
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~~ 286 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTPE 286 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCCC
Confidence 36778888887777655 88899999999998 666666665544
No 343
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.066 Score=52.02 Aligned_cols=100 Identities=28% Similarity=0.342 Sum_probs=58.5
Q ss_pred CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcC
Q 011079 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQ 237 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 237 (494)
++++..||+|+|||+.+ ++++...|+...+++||.....-..
T Consensus 385 RNilfyGPPGTGKTm~A----------------------------------relAr~SGlDYA~mTGGDVAPlG~q---- 426 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA----------------------------------RELARHSGLDYAIMTGGDVAPLGAQ---- 426 (630)
T ss_pred hheeeeCCCCCCchHHH----------------------------------HHHHhhcCCceehhcCCCccccchH----
Confidence 57999999999999861 1223455677777777765332111
Q ss_pred CCeEEEEchHHHHHhHhcCCccccccceEEecccccccC--------CCcHHHHHHHHHHC-CCCCcEEEEEeec
Q 011079 238 PVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS--------PEFQPSVEQLIRFL-PANRQILMFSATF 303 (494)
Q Consensus 238 ~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~--------~~~~~~~~~~~~~~-~~~~~~i~~SATl 303 (494)
-|+-...|++|..+...- =+++|||||.++. ...+..+..++-+. .....++++=||-
T Consensus 427 ----aVTkiH~lFDWakkS~rG----LllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtN 493 (630)
T KOG0742|consen 427 ----AVTKIHKLFDWAKKSRRG----LLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATN 493 (630)
T ss_pred ----HHHHHHHHHHHHhhcccc----eEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccC
Confidence 133445566665543221 2588999997542 12233444443332 3356688888884
No 344
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.46 E-value=0.029 Score=53.54 Aligned_cols=58 Identities=26% Similarity=0.252 Sum_probs=42.8
Q ss_pred CCCCcHHHHHHHHHHhcCC-cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHH
Q 011079 140 FERPSPIQEESIPIALTGS-DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELA 201 (494)
Q Consensus 140 ~~~~~~~Q~~~i~~~~~~~-~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la 201 (494)
|..+++-+...+-.+...+ +++++|.||||||+. +-.++..+.... +++.+--+.+|.
T Consensus 155 ~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i~~~e---RvItiEDtaELq 213 (355)
T COG4962 155 FGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFIDSDE---RVITIEDTAELQ 213 (355)
T ss_pred cCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcCCCcc---cEEEEeehhhhc
Confidence 6788999999988888776 899999999999995 222333333222 788877887775
No 345
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.44 E-value=0.035 Score=60.39 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=51.9
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcC-CCceEEEEEcCcHHHHHHHHHHHHHHh
Q 011079 141 ERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD-NNVIQVVILVPTRELALQTSQVCKELG 212 (494)
Q Consensus 141 ~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~-~~~~~~lil~P~~~la~q~~~~~~~~~ 212 (494)
..+++-|.+++... ...++|.|..|||||.+...-+...+... -...++|+|+-|+..|..+.+.+..+.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 35889999998653 45689999999999998554444434332 234589999999999988887776654
No 346
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.42 E-value=0.033 Score=51.88 Aligned_cols=45 Identities=22% Similarity=0.163 Sum_probs=30.4
Q ss_pred cCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc---CcHHHHH
Q 011079 156 TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV---PTRELAL 202 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~---P~~~la~ 202 (494)
.|.-++|.|++|+|||+..+..++...... +..+++++ |..+++.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~~vly~s~E~~~~~~~~ 59 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQ--GKPVLFFSLEMSKEQLLQ 59 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCceEEEeCCCCHHHHHH
Confidence 345589999999999987666666555442 23678888 4444443
No 347
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.41 E-value=0.055 Score=51.63 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchhHHhH
Q 011079 157 GSDILARAKNGTGKTAAFC 175 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (494)
+.++++.||+|+|||+.+.
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 3469999999999998753
No 348
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.35 E-value=0.046 Score=53.11 Aligned_cols=36 Identities=22% Similarity=0.409 Sum_probs=22.9
Q ss_pred cceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEeec
Q 011079 263 CSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATF 303 (494)
Q Consensus 263 ~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SATl 303 (494)
=.++++||+|++... +-..++..+ .+..++++-||-
T Consensus 105 ~tiLflDEIHRfnK~----QQD~lLp~v-E~G~iilIGATT 140 (436)
T COG2256 105 RTILFLDEIHRFNKA----QQDALLPHV-ENGTIILIGATT 140 (436)
T ss_pred ceEEEEehhhhcChh----hhhhhhhhh-cCCeEEEEeccC
Confidence 357999999997421 112233333 466788999994
No 349
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.32 E-value=0.24 Score=50.12 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=22.6
Q ss_pred ccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEeec
Q 011079 262 DCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATF 303 (494)
Q Consensus 262 ~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SATl 303 (494)
...+|+|||+|++.. .....++..+. ...++++.+|-
T Consensus 92 ~~~vL~IDEi~~l~~----~~q~~LL~~le-~~~iilI~att 128 (413)
T PRK13342 92 RRTILFIDEIHRFNK----AQQDALLPHVE-DGTITLIGATT 128 (413)
T ss_pred CceEEEEechhhhCH----HHHHHHHHHhh-cCcEEEEEeCC
Confidence 467899999998742 22333444443 34566777763
No 350
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.31 E-value=0.11 Score=55.22 Aligned_cols=19 Identities=37% Similarity=0.378 Sum_probs=15.5
Q ss_pred cEEEEccCCCchhHHhHHH
Q 011079 159 DILARAKNGTGKTAAFCIP 177 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~ 177 (494)
.+|+.||.|+|||+.+...
T Consensus 40 a~Lf~Gp~G~GKttlA~~l 58 (620)
T PRK14948 40 AYLFTGPRGTGKTSSARIL 58 (620)
T ss_pred eEEEECCCCCChHHHHHHH
Confidence 4799999999999975443
No 351
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.31 E-value=0.2 Score=48.66 Aligned_cols=143 Identities=14% Similarity=0.109 Sum_probs=67.6
Q ss_pred cHHHHHHHHHHhcC--C---cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcE
Q 011079 144 SPIQEESIPIALTG--S---DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQ 218 (494)
Q Consensus 144 ~~~Q~~~i~~~~~~--~---~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~ 218 (494)
+|++...+..+... + -+++.||.|+|||+.+...+-..+-...... -.-|- ....|..+.....-.
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~--~~~Cg-------~C~~C~~~~~~~HpD 73 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPG--HKPCG-------ECMSCHLFGQGSHPD 73 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCC--CCCCC-------cCHHHHHHhcCCCCC
Confidence 57777777776632 2 3889999999999875443332221111000 00011 123344443333333
Q ss_pred EEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEE
Q 011079 219 VMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILM 298 (494)
Q Consensus 219 ~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~ 298 (494)
+..+.......+. . .....|.|-..-.+.+.+... ......+++|+|++|.| +......+.+++...+....+|+
T Consensus 74 ~~~~~p~~~~~~~-g--~~~~~I~id~iR~l~~~~~~~-p~~~~~kV~iiEp~~~L-d~~a~naLLk~LEep~~~~~~Il 148 (325)
T PRK08699 74 FYEITPLSDEPEN-G--RKLLQIKIDAVREIIDNVYLT-SVRGGLRVILIHPAESM-NLQAANSLLKVLEEPPPQVVFLL 148 (325)
T ss_pred EEEEecccccccc-c--ccCCCcCHHHHHHHHHHHhhC-cccCCceEEEEechhhC-CHHHHHHHHHHHHhCcCCCEEEE
Confidence 3333221100000 0 000112222212233333322 22467889999999987 44456666677777665554444
Q ss_pred EE
Q 011079 299 FS 300 (494)
Q Consensus 299 ~S 300 (494)
+|
T Consensus 149 vt 150 (325)
T PRK08699 149 VS 150 (325)
T ss_pred Ee
Confidence 33
No 352
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.31 E-value=0.036 Score=54.60 Aligned_cols=27 Identities=11% Similarity=0.311 Sum_probs=19.7
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhc
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEKIDQ 184 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~ 184 (494)
+.-++++||||||||+. +..++..+..
T Consensus 134 ~glilI~GpTGSGKTTt-L~aLl~~i~~ 160 (358)
T TIGR02524 134 EGIVFITGATGSGKSTL-LAAIIRELAE 160 (358)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHhh
Confidence 34499999999999997 4555555543
No 353
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.30 E-value=0.14 Score=51.99 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=23.0
Q ss_pred CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc
Q 011079 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (494)
+.+++.|++|+|||.. +.++...+... +.+++++.
T Consensus 142 npl~L~G~~G~GKTHL-l~Ai~~~l~~~--~~~v~yi~ 176 (445)
T PRK12422 142 NPIYLFGPEGSGKTHL-MQAAVHALRES--GGKILYVR 176 (445)
T ss_pred ceEEEEcCCCCCHHHH-HHHHHHHHHHc--CCCEEEee
Confidence 3489999999999986 33444444432 23566665
No 354
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.28 E-value=0.045 Score=57.18 Aligned_cols=137 Identities=18% Similarity=0.214 Sum_probs=71.6
Q ss_pred cCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEE---------ECCC
Q 011079 156 TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVT---------TGGT 226 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~---------~g~~ 226 (494)
.|+.+-++||.|+|||+++ .+++++++-..+...+=-+|.+.+-.. ++++.....+-+-+.+ +|-.
T Consensus 493 pGe~vALVGPSGsGKSTia--sLL~rfY~PtsG~IllDG~~i~~~~~~---~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~ 567 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIA--SLLLRFYDPTSGRILLDGVPISDINHK---YLRRKIGLVGQEPVLFSGSIRENIAYGLD 567 (716)
T ss_pred CCCEEEEECCCCCCHHHHH--HHHHHhcCCCCCeEEECCeehhhcCHH---HHHHHeeeeeccceeecccHHHHHhcCCC
Confidence 5778999999999999974 356666654433222223366665533 3332221111111111 1111
Q ss_pred ChH--------------HHHHHhcCCCeEEEEchHHHHHhHhc-----CCccccccceEEecccccccCCCcHHHHHHHH
Q 011079 227 SLK--------------DDIMRLYQPVHLLVGTPGRILDLSKK-----GVCILKDCSMLVMDEADKLLSPEFQPSVEQLI 287 (494)
Q Consensus 227 ~~~--------------~~~~~~~~~~~Ilv~T~~~l~~~~~~-----~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~ 287 (494)
... +-+..+.++.+-.|+.-|..+.--++ ....+++..++|+|||-.-+|..-...+++.+
T Consensus 568 ~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL 647 (716)
T KOG0058|consen 568 NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEAL 647 (716)
T ss_pred CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHH
Confidence 111 11122223344444444332210000 02236678899999999888877788888888
Q ss_pred HHCCCCCcEE
Q 011079 288 RFLPANRQIL 297 (494)
Q Consensus 288 ~~~~~~~~~i 297 (494)
..+..++-+|
T Consensus 648 ~~~~~~rTVl 657 (716)
T KOG0058|consen 648 DRLMQGRTVL 657 (716)
T ss_pred HHhhcCCeEE
Confidence 8776664333
No 355
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.28 E-value=0.092 Score=53.48 Aligned_cols=52 Identities=25% Similarity=0.216 Sum_probs=33.5
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHh
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELG 212 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~ 212 (494)
|.-+++.|++|+|||+..+..+...... +.+++|++-. +...|+...+.++.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~---g~~vlYvs~E-es~~qi~~ra~rlg 131 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA---GGKVLYVSGE-ESASQIKLRAERLG 131 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEcc-ccHHHHHHHHHHcC
Confidence 3458899999999999765555544322 3378888743 34455555555553
No 356
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.27 E-value=0.046 Score=53.96 Aligned_cols=37 Identities=14% Similarity=0.119 Sum_probs=24.1
Q ss_pred cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcC
Q 011079 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVP 196 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 196 (494)
.++++||||||||+. +..++..+.......+++.+-.
T Consensus 151 lilI~G~TGSGKTT~-l~al~~~i~~~~~~~~IvtiEd 187 (372)
T TIGR02525 151 LGLICGETGSGKSTL-AASIYQHCGETYPDRKIVTYED 187 (372)
T ss_pred EEEEECCCCCCHHHH-HHHHHHHHHhcCCCceEEEEec
Confidence 489999999999997 4556666654322234555443
No 357
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.21 E-value=0.049 Score=59.31 Aligned_cols=70 Identities=16% Similarity=0.158 Sum_probs=51.7
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhc-CCCceEEEEEcCcHHHHHHHHHHHHHHh
Q 011079 141 ERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQ-DNNVIQVVILVPTRELALQTSQVCKELG 212 (494)
Q Consensus 141 ~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~P~~~la~q~~~~~~~~~ 212 (494)
..+++-|.+++... ...++|.|..|||||.+...-+...+.. .-...++|+|+-|+..|..+.+.+.++.
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 35899999998753 3568899999999999855444433332 2234589999999999999887776654
No 358
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.22 Score=49.23 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=19.7
Q ss_pred cEEEEccCCCchhHHhHHHHHHhhhcC
Q 011079 159 DILARAKNGTGKTAAFCIPALEKIDQD 185 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~ 185 (494)
++++.|+||+|||.+ ...++..+...
T Consensus 44 n~~iyG~~GTGKT~~-~~~v~~~l~~~ 69 (366)
T COG1474 44 NIIIYGPTGTGKTAT-VKFVMEELEES 69 (366)
T ss_pred cEEEECCCCCCHhHH-HHHHHHHHHhh
Confidence 599999999999987 44555555543
No 359
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.20 E-value=0.046 Score=57.27 Aligned_cols=70 Identities=19% Similarity=0.142 Sum_probs=50.7
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHH-HHHHHHhc
Q 011079 142 RPSPIQEESIPIALTG--SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTS-QVCKELGK 213 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~-~~~~~~~~ 213 (494)
..+|+|.+.++++... +.+++..++-+|||...+-.+...+.... ..+|++.||..+|..+. ..+..+..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P--~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDP--GPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCC--CCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 5689999999988766 45999999999999964443333333333 36899999999998875 35554443
No 360
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.18 E-value=0.093 Score=54.94 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=14.7
Q ss_pred EEEEccCCCchhHHhHH
Q 011079 160 ILARAKNGTGKTAAFCI 176 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~ 176 (494)
+++.||.|+|||+.+-.
T Consensus 41 yLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 41 YIFSGPRGVGKTSSARA 57 (563)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 78999999999998544
No 361
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.17 E-value=0.13 Score=57.83 Aligned_cols=44 Identities=23% Similarity=0.472 Sum_probs=35.3
Q ss_pred cccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEeecC
Q 011079 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFP 304 (494)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SATl~ 304 (494)
..--+||||++|.+.+......+..+++..+.+..+|+.|-+.|
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 33467999999998666667788888999998898888887754
No 362
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.17 E-value=0.015 Score=49.16 Aligned_cols=115 Identities=19% Similarity=0.272 Sum_probs=58.1
Q ss_pred cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcCC
Q 011079 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQP 238 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 238 (494)
.++|.|++|+|||+. ++-+.+.+...+.. -.=++||- .++=+...|+.+.-+..+....- .....
T Consensus 7 ki~ITG~PGvGKtTl-~~ki~e~L~~~g~k-vgGf~t~E----------VR~gGkR~GF~Ivdl~tg~~~~l---a~~~~ 71 (179)
T COG1618 7 KIFITGRPGVGKTTL-VLKIAEKLREKGYK-VGGFITPE----------VREGGKRIGFKIVDLATGEEGIL---ARVGF 71 (179)
T ss_pred EEEEeCCCCccHHHH-HHHHHHHHHhcCce-eeeEEeee----------eecCCeEeeeEEEEccCCceEEE---EEcCC
Confidence 489999999999997 55566666665543 33455552 22334445566555442221100 00000
Q ss_pred CeEEEEchHHHHHhHhc-----CCccccccceEEecccccc--cCCCcHHHHHHHHH
Q 011079 239 VHLLVGTPGRILDLSKK-----GVCILKDCSMLVMDEADKL--LSPEFQPSVEQLIR 288 (494)
Q Consensus 239 ~~Ilv~T~~~l~~~~~~-----~~~~l~~~~~iViDEah~~--~~~~~~~~~~~~~~ 288 (494)
...-|+-++...+.+.+ -...+..-++||+||+--| ....|...+..++.
T Consensus 72 ~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~ 128 (179)
T COG1618 72 SRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLK 128 (179)
T ss_pred CCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhc
Confidence 11222222222221110 0111344689999999854 34556666666654
No 363
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.10 E-value=0.14 Score=55.29 Aligned_cols=76 Identities=13% Similarity=0.236 Sum_probs=65.4
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHc----CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcC-cccccCCCCCCCEEE
Q 011079 356 QINQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD-LFTRGIDIQAVNVVI 430 (494)
Q Consensus 356 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~-~~~~Gidi~~v~~VI 430 (494)
...+++|.+|+..-+.+.++.+.+. ++.+..+||+++..++..++....+|...|+|+|. .+...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 4458999999999999888777654 68899999999999999999999999999999996 455567888999888
Q ss_pred E
Q 011079 431 N 431 (494)
Q Consensus 431 ~ 431 (494)
.
T Consensus 389 I 389 (681)
T PRK10917 389 I 389 (681)
T ss_pred E
Confidence 4
No 364
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.05 E-value=0.19 Score=54.25 Aligned_cols=76 Identities=8% Similarity=0.163 Sum_probs=64.6
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc-CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEcC
Q 011079 357 INQSIIFCNSVNRVELLAKKITEL-GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFD 433 (494)
Q Consensus 357 ~~~~lVF~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~ 433 (494)
+.++||.+|+++.+.++.+.|.+. +..+..+||+++..+|...+.....|..+|+|+|..+. -+.+.++.+||..+
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVvDE 266 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIVDE 266 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEEEC
Confidence 458999999999999999999874 77899999999999999999999999999999997543 25677888877443
No 365
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.04 E-value=0.18 Score=46.46 Aligned_cols=51 Identities=18% Similarity=0.122 Sum_probs=30.9
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL 211 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (494)
|..+++.|++|+|||+.....+...+.. +..+++++- .+...++.+.++.+
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~---g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRD---GDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEEc-cCCHHHHHHHHHHh
Confidence 4568999999999998766555554433 225677763 22233444444443
No 366
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.01 E-value=0.25 Score=48.27 Aligned_cols=35 Identities=20% Similarity=0.149 Sum_probs=25.1
Q ss_pred cHHHHHHHHHHhc--CC---cEEEEccCCCchhHHhHHHH
Q 011079 144 SPIQEESIPIALT--GS---DILARAKNGTGKTAAFCIPA 178 (494)
Q Consensus 144 ~~~Q~~~i~~~~~--~~---~~ii~~~TGsGKT~~~~~~~ 178 (494)
+|+|...+..+.. ++ -+++.||.|.||+..+...+
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A 42 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLA 42 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHH
Confidence 5777777776654 32 38899999999998754433
No 367
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.00 E-value=0.1 Score=56.91 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=51.9
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCC-CceEEEEEcCcHHHHHHHHHHHHHHh
Q 011079 141 ERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN-NVIQVVILVPTRELALQTSQVCKELG 212 (494)
Q Consensus 141 ~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~-~~~~~lil~P~~~la~q~~~~~~~~~ 212 (494)
..+++-|.+++.+. ...++|.|..|||||.+.+.-+...+...+ ...++|+++-|+..|..+.+.+.++.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 35889999999753 456999999999999985555544443322 33479999999999988877776664
No 368
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.99 E-value=0.027 Score=52.04 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=12.7
Q ss_pred EEEEccCCCchhHH
Q 011079 160 ILARAKNGTGKTAA 173 (494)
Q Consensus 160 ~ii~~~TGsGKT~~ 173 (494)
++|.|+.|||||+.
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999996
No 369
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.98 E-value=0.18 Score=52.30 Aligned_cols=75 Identities=8% Similarity=0.158 Sum_probs=63.6
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc-CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCcccccCCCCCCCEEEEc
Q 011079 357 INQSIIFCNSVNRVELLAKKITEL-GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINF 432 (494)
Q Consensus 357 ~~~~lVF~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~ 432 (494)
.+++||.+|+...+.++++.|.+. +..+..+||.++..+|.+++....+|..+|+|+|..+-. ..++++.+||..
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVD 100 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVD 100 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEE
Confidence 458999999999999999999864 678899999999999999999999999999999975432 467788887743
No 370
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=94.98 E-value=0.38 Score=49.17 Aligned_cols=20 Identities=40% Similarity=0.303 Sum_probs=15.9
Q ss_pred cEEEEccCCCchhHHhHHHH
Q 011079 159 DILARAKNGTGKTAAFCIPA 178 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~ 178 (494)
.+++.||.|+|||+.+...+
T Consensus 41 a~Lf~Gp~G~GKtt~A~~lA 60 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARIFA 60 (451)
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 37899999999999855433
No 371
>PRK06620 hypothetical protein; Validated
Probab=94.97 E-value=0.054 Score=49.32 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=14.0
Q ss_pred CcEEEEccCCCchhHH
Q 011079 158 SDILARAKNGTGKTAA 173 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~ 173 (494)
+.+++.||+|||||..
T Consensus 45 ~~l~l~Gp~G~GKThL 60 (214)
T PRK06620 45 FTLLIKGPSSSGKTYL 60 (214)
T ss_pred ceEEEECCCCCCHHHH
Confidence 3489999999999985
No 372
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.96 E-value=0.19 Score=49.78 Aligned_cols=51 Identities=24% Similarity=0.176 Sum_probs=31.9
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL 211 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (494)
|.-+++.|++|+|||+..+..+...... +.+++|+.-. +...|+...+.++
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~---g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR---GGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEECC-cCHHHHHHHHHHc
Confidence 3458999999999999755554443322 2378888743 3344555555554
No 373
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.95 E-value=0.36 Score=44.61 Aligned_cols=51 Identities=18% Similarity=0.136 Sum_probs=32.4
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL 211 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (494)
|.-+++.|++|+|||+.....+...+.. +.+++++.=.. -..++.+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~---g~~~~y~~~e~-~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ---GKKVYVITTEN-TSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC---CCEEEEEEcCC-CHHHHHHHHHHC
Confidence 3458899999999999876666655543 33677777322 223444545444
No 374
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.94 E-value=0.16 Score=54.82 Aligned_cols=39 Identities=21% Similarity=0.360 Sum_probs=24.5
Q ss_pred ccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEeecCc
Q 011079 262 DCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPV 305 (494)
Q Consensus 262 ~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SATl~~ 305 (494)
...++||||+|++.. .....++..+ .+.++++++||-+.
T Consensus 109 ~~~IL~IDEIh~Ln~----~qQdaLL~~l-E~g~IiLI~aTTen 147 (725)
T PRK13341 109 KRTILFIDEVHRFNK----AQQDALLPWV-ENGTITLIGATTEN 147 (725)
T ss_pred CceEEEEeChhhCCH----HHHHHHHHHh-cCceEEEEEecCCC
Confidence 467899999998742 1222334444 34567888888543
No 375
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.93 E-value=0.11 Score=51.60 Aligned_cols=47 Identities=19% Similarity=0.238 Sum_probs=29.9
Q ss_pred ccceEEecccccccCC-CcHHHHHHHHHHCCC-CCcEEEEEeecCcchH
Q 011079 262 DCSMLVMDEADKLLSP-EFQPSVEQLIRFLPA-NRQILMFSATFPVTVK 308 (494)
Q Consensus 262 ~~~~iViDEah~~~~~-~~~~~~~~~~~~~~~-~~~~i~~SATl~~~~~ 308 (494)
++++++||.++.+... .....+-.++..+.. +.|+|+.|-..|.++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 7899999999987654 234444444444433 4477777766665544
No 376
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.92 E-value=0.24 Score=52.51 Aligned_cols=117 Identities=15% Similarity=0.133 Sum_probs=56.5
Q ss_pred EEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHhccCCcEEEEEECCCCh-HHHHHHhcCC
Q 011079 160 ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSL-KDDIMRLYQP 238 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~ 238 (494)
+|++||.|+|||+++.+.+-...-..... -.--|. ....|..+......++..+.+.... .++++.
T Consensus 42 yLf~Gp~G~GKtt~A~~lAk~l~c~~~~~--~~~~Cg-------~C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~---- 108 (614)
T PRK14971 42 YLFCGPRGVGKTTCARIFAKTINCQNLTA--DGEACN-------ECESCVAFNEQRSYNIHELDAASNNSVDDIRN---- 108 (614)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCCCC--CCCCCC-------cchHHHHHhcCCCCceEEecccccCCHHHHHH----
Confidence 78999999999996444332221111000 000111 1234555544444555554443221 122211
Q ss_pred CeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEee
Q 011079 239 VHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSAT 302 (494)
Q Consensus 239 ~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 302 (494)
+...+.. ........++||||+|.|... -...+.+.+..-+.... +++.+|
T Consensus 109 ----------li~~~~~-~P~~~~~KVvIIdea~~Ls~~-a~naLLK~LEepp~~ti-fIL~tt 159 (614)
T PRK14971 109 ----------LIEQVRI-PPQIGKYKIYIIDEVHMLSQA-AFNAFLKTLEEPPSYAI-FILATT 159 (614)
T ss_pred ----------HHHHHhh-CcccCCcEEEEEECcccCCHH-HHHHHHHHHhCCCCCeE-EEEEeC
Confidence 1221222 223567899999999988542 23344455555444443 444444
No 377
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.86 E-value=0.26 Score=49.23 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=25.6
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEeecC
Q 011079 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFP 304 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SATl~ 304 (494)
.....++||||+|+|... ....+.+++..-+++. ++++++|-+
T Consensus 115 ~~~~kViiIDead~m~~~-aanaLLk~LEep~~~~-~fIL~a~~~ 157 (394)
T PRK07940 115 TGRWRIVVIEDADRLTER-AANALLKAVEEPPPRT-VWLLCAPSP 157 (394)
T ss_pred cCCcEEEEEechhhcCHH-HHHHHHHHhhcCCCCC-eEEEEECCh
Confidence 457789999999998533 2334444444433344 455555533
No 378
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.85 E-value=0.046 Score=53.40 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=30.6
Q ss_pred HHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHH
Q 011079 153 IALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELA 201 (494)
Q Consensus 153 ~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la 201 (494)
++..+.+++|+|+||||||+. +-.++..+... .+++.+-.+.++.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl-l~aLl~~i~~~---~rivtiEd~~El~ 202 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM-SKTLISAIPPQ---ERLITIEDTLELV 202 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH-HHHHHcccCCC---CCEEEECCCcccc
Confidence 344667899999999999996 44455544332 2566666776663
No 379
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.83 E-value=0.24 Score=52.95 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHc-C-CcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCccc
Q 011079 343 QKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITEL-G-YSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFT 418 (494)
Q Consensus 343 ~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~-~-~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~ 418 (494)
.|.+....++... .++.+||.+|....+.++.+.|.+. + ..+..+|+.++..+|.+.+....+|+.+|+|.|..+.
T Consensus 172 GKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv 251 (665)
T PRK14873 172 DWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV 251 (665)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE
Confidence 5666666665543 3558999999999999999999875 3 5799999999999999999999999999999997643
Q ss_pred ccCCCCCCCEEEEc
Q 011079 419 RGIDIQAVNVVINF 432 (494)
Q Consensus 419 ~Gidi~~v~~VI~~ 432 (494)
=.-+++...||..
T Consensus 252 -FaP~~~LgLIIvd 264 (665)
T PRK14873 252 -FAPVEDLGLVAIW 264 (665)
T ss_pred -EeccCCCCEEEEE
Confidence 3667788887743
No 380
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.73 E-value=0.12 Score=51.38 Aligned_cols=80 Identities=21% Similarity=0.147 Sum_probs=52.4
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHH
Q 011079 130 ELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCK 209 (494)
Q Consensus 130 ~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~ 209 (494)
.+++.+++. +..+-..|.++.=..-.|.. .|.|-.|||||.....-+ ..+.......++++.|=|+.|+.++.....
T Consensus 151 a~l~~iesk-IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Ka-a~lh~knPd~~I~~Tfftk~L~s~~r~lv~ 227 (660)
T COG3972 151 ALLDTIESK-IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKA-AELHSKNPDSRIAFTFFTKILASTMRTLVP 227 (660)
T ss_pred HHHHHHHHH-HhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHH-HHHhcCCCCceEEEEeehHHHHHHHHHHHH
Confidence 455555543 33444566666555555554 788889999998633322 234444455689999999999998877666
Q ss_pred HHh
Q 011079 210 ELG 212 (494)
Q Consensus 210 ~~~ 212 (494)
++.
T Consensus 228 ~F~ 230 (660)
T COG3972 228 EFF 230 (660)
T ss_pred HHH
Confidence 664
No 381
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.72 E-value=0.48 Score=45.93 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHh----cCC---cEEEEccCCCchhHHhHHHH
Q 011079 144 SPIQEESIPIAL----TGS---DILARAKNGTGKTAAFCIPA 178 (494)
Q Consensus 144 ~~~Q~~~i~~~~----~~~---~~ii~~~TGsGKT~~~~~~~ 178 (494)
+|++...+..+. .++ -.++.||.|.||++.+...+
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A 45 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALA 45 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHH
Confidence 456655555443 443 37899999999998754433
No 382
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=94.71 E-value=0.21 Score=50.89 Aligned_cols=148 Identities=12% Similarity=0.060 Sum_probs=81.3
Q ss_pred CCcHHHHHHHHHHhc------C----CcEEEEccCCCchhHHhH-HHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHH
Q 011079 142 RPSPIQEESIPIALT------G----SDILARAKNGTGKTAAFC-IPALEKIDQDNNVIQVVILVPTRELALQTSQVCKE 210 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~~------~----~~~ii~~~TGsGKT~~~~-~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~ 210 (494)
.+-|+|.-++..+.. + +..+|..|-+-|||+.+. +.+...+.....+....|++|+.+-+......++.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~ 140 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARD 140 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHH
Confidence 577999999988872 2 347899999999997644 33333344444555788889999888777766665
Q ss_pred HhccCCcEEEEEECCCChHHHHHHhcCCCeEEEEchHHHHHhHh--cCCccccccceEEecccccccCCCcHHHHHHHHH
Q 011079 211 LGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSK--KGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIR 288 (494)
Q Consensus 211 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~--~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~ 288 (494)
...... ........-.....|.+.-....+..+. .+..+-.+..+.|+||.|...+.. ..+..+..
T Consensus 141 mv~~~~----------~l~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~~~~~~ 208 (546)
T COG4626 141 MVKRDD----------DLRDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMYSEAKG 208 (546)
T ss_pred HHHhCc----------chhhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHHHHHHh
Confidence 543322 1110000000111122221111222222 223334567899999999865431 33444433
Q ss_pred HC--CCCCcEEEEEe
Q 011079 289 FL--PANRQILMFSA 301 (494)
Q Consensus 289 ~~--~~~~~~i~~SA 301 (494)
-+ .++.+++..|.
T Consensus 209 g~~ar~~~l~~~ITT 223 (546)
T COG4626 209 GLGARPEGLVVYITT 223 (546)
T ss_pred hhccCcCceEEEEec
Confidence 22 24555665554
No 383
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.71 E-value=0.11 Score=56.32 Aligned_cols=72 Identities=13% Similarity=0.249 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcC-----CcEEE-EccCCCHHHHHHHHHHhhcCCccEEEEcCcc
Q 011079 346 HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELG-----YSCFY-IHAKMLQDHRNRVFHDFRNGACRNLVCTDLF 417 (494)
Q Consensus 346 ~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~-----~~~~~-~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~~ 417 (494)
-.+..++-...+.++++.+||..-+.+.++.|.+.. ..+.. ||+.|+..+++.+++++.+|..+|||+|+.+
T Consensus 114 g~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 114 GLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 444555555566899999999999999999988752 33333 9999999999999999999999999999854
No 384
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.68 E-value=0.11 Score=50.72 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=30.3
Q ss_pred HHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHH
Q 011079 153 IALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELA 201 (494)
Q Consensus 153 ~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la 201 (494)
++..+.+++|+|+||||||+. +-+++..+... .+++++=-+.++.
T Consensus 156 ~v~~~~nili~G~tgSGKTTl-l~aL~~~ip~~---~ri~tiEd~~El~ 200 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTTF-TNAALREIPAI---ERLITVEDAREIV 200 (332)
T ss_pred HHHcCCcEEEECCCCCCHHHH-HHHHHhhCCCC---CeEEEecCCCccc
Confidence 344567899999999999996 45555555433 2666655555553
No 385
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.68 E-value=0.22 Score=53.22 Aligned_cols=18 Identities=39% Similarity=0.348 Sum_probs=15.0
Q ss_pred EEEEccCCCchhHHhHHH
Q 011079 160 ILARAKNGTGKTAAFCIP 177 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~ 177 (494)
+++.||.|+|||+++-..
T Consensus 43 YLF~GP~GtGKTt~AriL 60 (725)
T PRK07133 43 YLFSGPRGTGKTSVAKIF 60 (725)
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 689999999999985443
No 386
>PHA00729 NTP-binding motif containing protein
Probab=94.66 E-value=0.13 Score=46.72 Aligned_cols=15 Identities=33% Similarity=0.461 Sum_probs=13.8
Q ss_pred cEEEEccCCCchhHH
Q 011079 159 DILARAKNGTGKTAA 173 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~ 173 (494)
++++.|++|+|||+.
T Consensus 19 nIlItG~pGvGKT~L 33 (226)
T PHA00729 19 SAVIFGKQGSGKTTY 33 (226)
T ss_pred EEEEECCCCCCHHHH
Confidence 599999999999986
No 387
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.64 E-value=0.15 Score=50.37 Aligned_cols=16 Identities=38% Similarity=0.420 Sum_probs=13.9
Q ss_pred cEEEEccCCCchhHHh
Q 011079 159 DILARAKNGTGKTAAF 174 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (494)
.+++.||.|+|||+.+
T Consensus 38 ~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIA 53 (355)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999864
No 388
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.58 E-value=0.39 Score=46.40 Aligned_cols=36 Identities=14% Similarity=0.106 Sum_probs=24.5
Q ss_pred CcHHHHHHHHHHh----cCC---cEEEEccCCCchhHHhHHHH
Q 011079 143 PSPIQEESIPIAL----TGS---DILARAKNGTGKTAAFCIPA 178 (494)
Q Consensus 143 ~~~~Q~~~i~~~~----~~~---~~ii~~~TGsGKT~~~~~~~ 178 (494)
++|+|...+..+. .++ -.++.||.|.||+..+...+
T Consensus 4 ~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a 46 (319)
T PRK06090 4 DYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFS 46 (319)
T ss_pred CcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHH
Confidence 4566666665554 343 38999999999998754433
No 389
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.56 E-value=0.64 Score=46.03 Aligned_cols=131 Identities=16% Similarity=0.224 Sum_probs=80.1
Q ss_pred EEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcC
Q 011079 160 ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQ 237 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 237 (494)
++.+|=-|||||+.....+. ++... +.++++++ ..|..| .+.++.++...++.+-.. +.....-++
T Consensus 103 ImmvGLQGsGKTTt~~KLA~-~lkk~--~~kvllVaaD~~RpAA---~eQL~~La~q~~v~~f~~-~~~~~Pv~I----- 170 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAK-YLKKK--GKKVLLVAADTYRPAA---IEQLKQLAEQVGVPFFGS-GTEKDPVEI----- 170 (451)
T ss_pred EEEEeccCCChHhHHHHHHH-HHHHc--CCceEEEecccCChHH---HHHHHHHHHHcCCceecC-CCCCCHHHH-----
Confidence 77899999999998554333 33332 23556555 566666 455566666666555433 211111111
Q ss_pred CCeEEEEchHHHHHhHhcCCccccccceEEeccccccc-CCCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhc
Q 011079 238 PVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLL-SPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYL 315 (494)
Q Consensus 238 ~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~-~~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~ 315 (494)
...-+.. .....+++||+|=|-|+. +......+..+...+.++--++.+-|+...+..+.+..|-
T Consensus 171 -----------ak~al~~--ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~ 236 (451)
T COG0541 171 -----------AKAALEK--AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFN 236 (451)
T ss_pred -----------HHHHHHH--HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHh
Confidence 0111111 123457999999998754 3456677778888888888888889998777766666553
No 390
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.50 E-value=0.44 Score=40.91 Aligned_cols=53 Identities=15% Similarity=0.299 Sum_probs=39.9
Q ss_pred ccccceEEecccccccCCCc--HHHHHHHHHHCCCCCcEEEEEeecCcchHHHHH
Q 011079 260 LKDCSMLVMDEADKLLSPEF--QPSVEQLIRFLPANRQILMFSATFPVTVKDFKD 312 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~--~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~ 312 (494)
...+++||+||+=..+..++ ...+..+++..|...-+|+.+-.+|+++.+.++
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 45789999999987655443 456777888888888888888888876666544
No 391
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.48 E-value=0.28 Score=47.22 Aligned_cols=27 Identities=11% Similarity=0.199 Sum_probs=18.9
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhc
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEKIDQ 184 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~ 184 (494)
++.+++.|++|+|||.... ++...+..
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l~~ 182 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANELAK 182 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHH
Confidence 3569999999999998633 34444443
No 392
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.45 E-value=0.12 Score=45.70 Aligned_cols=144 Identities=15% Similarity=0.144 Sum_probs=73.2
Q ss_pred cCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHH-HHHHHHHHHHHhccCCcEEEEEECCCChHHHHHH
Q 011079 156 TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTREL-ALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMR 234 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~l-a~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 234 (494)
....+++..++|.|||++++--++..+..+ .+|+|+-=.+-- ...=...++++ .++.+.. .+....-. .
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G---~~V~ivQFlKg~~~~GE~~~l~~l---~~v~~~~--~g~~~~~~--~ 90 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHG---KKVGVVQFIKGAWSTGERNLLEFG---GGVEFHV--MGTGFTWE--T 90 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCC---CeEEEEEEecCCCccCHHHHHhcC---CCcEEEE--CCCCCccc--C
Confidence 345699999999999999776666665443 377777611100 00001122221 1222222 11111000 0
Q ss_pred hcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCc--HHHHHHHHHHCCCCCcEEEEEeecCcchHHHHH
Q 011079 235 LYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEF--QPSVEQLIRFLPANRQILMFSATFPVTVKDFKD 312 (494)
Q Consensus 235 ~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~--~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~ 312 (494)
....--.......+..... ...-..+++||+||+=..++.++ ...+..++...|...-+|++--.+|+++.+.++
T Consensus 91 --~~~~e~~~~~~~~~~~a~~-~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~AD 167 (191)
T PRK05986 91 --QDRERDIAAAREGWEEAKR-MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAAD 167 (191)
T ss_pred --CCcHHHHHHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 0000000001111221111 11235789999999987666554 456777788887777777666666766665544
No 393
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=0.2 Score=51.41 Aligned_cols=82 Identities=22% Similarity=0.271 Sum_probs=43.6
Q ss_pred cccceEEecccccccC-------CCcHHHHHHHHHHC---CCCCcEEEEEeecCcchHHHHHhhcCCCeEEEeccccccc
Q 011079 261 KDCSMLVMDEADKLLS-------PEFQPSVEQLIRFL---PANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLK 330 (494)
Q Consensus 261 ~~~~~iViDEah~~~~-------~~~~~~~~~~~~~~---~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (494)
....+|++||+|.|.. +.-...+..++..+ .....+.++-||-.+++.+-+ ++. | . .-
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpA--iLR-P------G---Rl 670 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPA--ILR-P------G---RL 670 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchh--hcC-C------C---cc
Confidence 4567899999998763 11223445555444 234678889999543322111 111 0 0 01
Q ss_pred ceeEEEEeehhhhHHHHHHHHHHh
Q 011079 331 GITQYYAFVEERQKVHCLNTLFSK 354 (494)
Q Consensus 331 ~~~~~~~~~~~~~k~~~l~~ll~~ 354 (494)
+-..|....+...+.++|..+.+.
T Consensus 671 Dk~LyV~lPn~~eR~~ILK~~tkn 694 (802)
T KOG0733|consen 671 DKLLYVGLPNAEERVAILKTITKN 694 (802)
T ss_pred CceeeecCCCHHHHHHHHHHHhcc
Confidence 122344455566677777776653
No 394
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.31 E-value=0.017 Score=50.41 Aligned_cols=50 Identities=24% Similarity=0.487 Sum_probs=24.7
Q ss_pred cccceEEecccccc--cCCCcHHHHHHHHHHCCCCCcEEEEEeecCcc-hHHHHHhhcC
Q 011079 261 KDCSMLVMDEADKL--LSPEFQPSVEQLIRFLPANRQILMFSATFPVT-VKDFKDKYLQ 316 (494)
Q Consensus 261 ~~~~~iViDEah~~--~~~~~~~~~~~~~~~~~~~~~~i~~SATl~~~-~~~~~~~~~~ 316 (494)
.+.++|||||+=.| ....|...+..++. ++..+| ||++.. ...+...+..
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~---s~~~vi---~vv~~~~~~~~l~~i~~ 146 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLD---SNKPVI---GVVHKRSDNPFLEEIKR 146 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHC---TTSEEE---EE--SS--SCCHHHHHT
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHc---CCCcEE---EEEecCCCcHHHHHHHh
Confidence 46789999999864 34567777666665 444433 455544 2334444433
No 395
>PRK10436 hypothetical protein; Provisional
Probab=94.21 E-value=0.089 Score=53.57 Aligned_cols=40 Identities=30% Similarity=0.411 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHhcCC--cEEEEccCCCchhHHhHHHHHHhhhc
Q 011079 144 SPIQEESIPIALTGS--DILARAKNGTGKTAAFCIPALEKIDQ 184 (494)
Q Consensus 144 ~~~Q~~~i~~~~~~~--~~ii~~~TGsGKT~~~~~~~l~~l~~ 184 (494)
.+.|.+.+..+.... -++++||||||||+. +..++..+..
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~~~ 244 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTLNT 244 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhhCC
Confidence 344555555554332 388999999999997 3456666543
No 396
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=94.17 E-value=0.27 Score=48.60 Aligned_cols=29 Identities=24% Similarity=0.172 Sum_probs=20.7
Q ss_pred hcCCcEEEEccCCCchhHHhHHHHHHhhhc
Q 011079 155 LTGSDILARAKNGTGKTAAFCIPALEKIDQ 184 (494)
Q Consensus 155 ~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~ 184 (494)
-.|+.++|.||+|+|||+.. ..+...+..
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~-~~i~~~I~~ 194 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLL-QKIAQAITR 194 (415)
T ss_pred CCCCEEEEECCCCCChhHHH-HHHHHhhcc
Confidence 36788999999999999863 334444433
No 397
>PHA00350 putative assembly protein
Probab=94.14 E-value=0.3 Score=48.45 Aligned_cols=25 Identities=8% Similarity=0.098 Sum_probs=18.0
Q ss_pred EEEEccCCCchhHHhHHH-HHHhhhc
Q 011079 160 ILARAKNGTGKTAAFCIP-ALEKIDQ 184 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~-~l~~l~~ 184 (494)
.++.|..|||||+.++.. ++..+.+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~ 29 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKD 29 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHC
Confidence 578999999999986653 4444443
No 398
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.13 E-value=0.28 Score=52.53 Aligned_cols=76 Identities=13% Similarity=0.189 Sum_probs=65.0
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHc----CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCc-ccccCCCCCCCEEE
Q 011079 356 QINQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-FTRGIDIQAVNVVI 430 (494)
Q Consensus 356 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~-~~~Gidi~~v~~VI 430 (494)
...+++|.+|+..-+.+.++.+.+. ++.+..++|+++..++..+++...+|...|+|+|.. +...+.+.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 3458999999999999888777653 789999999999999999999999999999999964 45567888888887
Q ss_pred E
Q 011079 431 N 431 (494)
Q Consensus 431 ~ 431 (494)
.
T Consensus 363 I 363 (630)
T TIGR00643 363 I 363 (630)
T ss_pred E
Confidence 4
No 399
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.01 E-value=0.49 Score=48.75 Aligned_cols=18 Identities=33% Similarity=0.331 Sum_probs=14.6
Q ss_pred EEEEccCCCchhHHhHHH
Q 011079 160 ILARAKNGTGKTAAFCIP 177 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~ 177 (494)
+++.||.|+|||+++.+.
T Consensus 41 yLf~Gp~G~GKTtlAr~l 58 (486)
T PRK14953 41 YIFAGPRGTGKTTIARIL 58 (486)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 578999999999875443
No 400
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=94.00 E-value=0.26 Score=48.16 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=24.5
Q ss_pred CcHHHHHHHHHHh----cCC---cEEEEccCCCchhHHhHHH
Q 011079 143 PSPIQEESIPIAL----TGS---DILARAKNGTGKTAAFCIP 177 (494)
Q Consensus 143 ~~~~Q~~~i~~~~----~~~---~~ii~~~TGsGKT~~~~~~ 177 (494)
.+|+|...+..+. +++ -.++.||.|.||++.+...
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~ 44 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYAL 44 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHH
Confidence 4567776666554 343 3889999999999875443
No 401
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.98 E-value=0.13 Score=48.46 Aligned_cols=50 Identities=22% Similarity=0.278 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHhc-CC-cEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcC
Q 011079 144 SPIQEESIPIALT-GS-DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVP 196 (494)
Q Consensus 144 ~~~Q~~~i~~~~~-~~-~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 196 (494)
.+.|.+.+..++. .+ -++++|+||||||+. +..++..+... ..+++.+-.
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i~~~--~~~iitiEd 116 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSELNTP--EKNIITVED 116 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhhCCC--CCeEEEECC
Confidence 3445555554443 23 489999999999997 34455555432 224555443
No 402
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=93.91 E-value=0.12 Score=47.97 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhHHh
Q 011079 159 DILARAKNGTGKTAAF 174 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (494)
++++.||+|.|||+.+
T Consensus 54 HvLl~GPPGlGKTTLA 69 (332)
T COG2255 54 HVLLFGPPGLGKTTLA 69 (332)
T ss_pred eEEeeCCCCCcHHHHH
Confidence 4999999999999853
No 403
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=0.16 Score=48.83 Aligned_cols=16 Identities=38% Similarity=0.466 Sum_probs=14.5
Q ss_pred CcEEEEccCCCchhHH
Q 011079 158 SDILARAKNGTGKTAA 173 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~ 173 (494)
+-+++.||+|+|||+.
T Consensus 186 KGVLLYGPPGTGKTLL 201 (406)
T COG1222 186 KGVLLYGPPGTGKTLL 201 (406)
T ss_pred CceEeeCCCCCcHHHH
Confidence 5699999999999986
No 404
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.80 E-value=0.48 Score=48.12 Aligned_cols=38 Identities=21% Similarity=0.121 Sum_probs=25.3
Q ss_pred cCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc
Q 011079 156 TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (494)
.|.-++|.|++|+|||...+..+....... +..+++++
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~~--g~~v~~fS 230 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALRE--GKPVLFFS 230 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhC--CCcEEEEE
Confidence 344589999999999987655554443222 23577776
No 405
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.76 E-value=0.86 Score=42.74 Aligned_cols=38 Identities=13% Similarity=0.357 Sum_probs=24.4
Q ss_pred cCCCCCHHHHHHHhccccCCCCcceEEEEecccchHHHHHHHHHhCC
Q 011079 432 FDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGT 478 (494)
Q Consensus 432 ~~~p~s~~~~~Qr~GRagR~g~~g~~~~l~~~~~~~~~~~l~~~~~~ 478 (494)
+.+|.++.+|+-.+.|+- |- ++.+|.....++-+.+|.
T Consensus 400 ~eP~vt~~D~~k~l~~tk----PT-----vn~~Dl~k~~~Ft~dFGq 437 (439)
T KOG0739|consen 400 LEPPVTMRDFLKSLSRTK----PT-----VNEDDLLKHEKFTEDFGQ 437 (439)
T ss_pred cCCCccHHHHHHHHhhcC----CC-----CCHHHHHHHHHHHHhhcc
Confidence 456778888887776652 21 355666667777666654
No 406
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=93.74 E-value=0.042 Score=53.33 Aligned_cols=15 Identities=20% Similarity=0.175 Sum_probs=13.4
Q ss_pred cEEEEccCCCchhHH
Q 011079 159 DILARAKNGTGKTAA 173 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~ 173 (494)
-+++.||.|+|||+.
T Consensus 150 gllL~GPPGcGKTll 164 (413)
T PLN00020 150 ILGIWGGKGQGKSFQ 164 (413)
T ss_pred EEEeeCCCCCCHHHH
Confidence 378899999999986
No 407
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=93.73 E-value=0.42 Score=46.74 Aligned_cols=40 Identities=10% Similarity=0.236 Sum_probs=24.8
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 011079 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 300 (494)
....+++||||+|+|... -...+.+.+..-|++..+|++|
T Consensus 108 ~~~~kvviI~~a~~~~~~-a~NaLLK~LEEPp~~~~~Il~t 147 (329)
T PRK08058 108 ESNKKVYIIEHADKMTAS-AANSLLKFLEEPSGGTTAILLT 147 (329)
T ss_pred ccCceEEEeehHhhhCHH-HHHHHHHHhcCCCCCceEEEEe
Confidence 467899999999988432 2344445555544555555533
No 408
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=0.28 Score=47.30 Aligned_cols=53 Identities=23% Similarity=0.081 Sum_probs=28.3
Q ss_pred cccccCCCHHHHHHHHHCCCCCC-cHHHHHHHHHHhcCCcEEEEccCCCchhHH
Q 011079 121 EFEDYFLKRELLMGIFEKGFERP-SPIQEESIPIALTGSDILARAKNGTGKTAA 173 (494)
Q Consensus 121 ~~~~~~l~~~l~~~l~~~~~~~~-~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~ 173 (494)
+|.+.+--+.+.+.+++.-.-.+ +|-.-.--..+..-+.+++.||+|+|||++
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTml 143 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTML 143 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHH
Confidence 46666555666666655311111 111100011112335699999999999987
No 409
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=93.70 E-value=0.14 Score=49.50 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=14.5
Q ss_pred CcEEEEccCCCchhHHh
Q 011079 158 SDILARAKNGTGKTAAF 174 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (494)
.++++.||+|+|||...
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35899999999999863
No 410
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=93.69 E-value=0.2 Score=47.91 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=41.7
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcC
Q 011079 140 FERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVP 196 (494)
Q Consensus 140 ~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 196 (494)
+...++-|..-+.++.+..-++..||-|+|||..+...+.+.+....-. ++|..=|
T Consensus 126 I~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~~v~-rIiLtRP 181 (348)
T COG1702 126 IIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVR-RIILTRP 181 (348)
T ss_pred eEecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhcccc-eeeecCc
Confidence 4466888999888888888899999999999988777777776654322 4444336
No 411
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.66 E-value=0.11 Score=48.14 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=35.3
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHh
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELG 212 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~ 212 (494)
|..++|.|++|+|||+..+..+...+..+ .++++++- .+-..++.+.+..++
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~g---e~~lyvs~-ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMG---EPGIYVAL-EEHPVQVRRNMAQFG 72 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcC---CcEEEEEe-eCCHHHHHHHHHHhC
Confidence 45689999999999998777777666432 36788872 334445555555543
No 412
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.64 E-value=0.4 Score=53.26 Aligned_cols=76 Identities=11% Similarity=0.159 Sum_probs=65.1
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHc----CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcC-cccccCCCCCCCEEE
Q 011079 356 QINQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD-LFTRGIDIQAVNVVI 430 (494)
Q Consensus 356 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~-~~~~Gidi~~v~~VI 430 (494)
...+++|.+||..-|.+.++.+.+. ++.+..+++..+..++..+++.+..|+.+|||+|. .+...+.+.++.+||
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 3468999999999999998887764 56788899999999999999999999999999996 455678888999887
Q ss_pred E
Q 011079 431 N 431 (494)
Q Consensus 431 ~ 431 (494)
.
T Consensus 579 I 579 (926)
T TIGR00580 579 I 579 (926)
T ss_pred e
Confidence 4
No 413
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.64 E-value=0.099 Score=54.89 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=24.9
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEE
Q 011079 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMF 299 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (494)
+++-+++|+||+-.-+|..-...+.+.+....++.-+|+.
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiI 525 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVI 525 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 5566788888888766655555665656555444444443
No 414
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=93.64 E-value=0.16 Score=53.79 Aligned_cols=35 Identities=26% Similarity=0.450 Sum_probs=24.3
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCC
Q 011079 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANR 294 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~ 294 (494)
+++-.++|+|||..-+|..-...+.+.+..+..++
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~r 515 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGR 515 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCC
Confidence 45567899999988777666666776666554443
No 415
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=93.59 E-value=0.29 Score=46.04 Aligned_cols=136 Identities=18% Similarity=0.131 Sum_probs=68.0
Q ss_pred CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc---CcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHH-
Q 011079 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV---PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIM- 233 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~---P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~- 233 (494)
.-++|.|.||.|||+..+..+.......+ ..|++++ +..+++..+...... +....+..+....++..
T Consensus 20 ~L~vi~a~pg~GKT~~~l~ia~~~a~~~~--~~vly~SlEm~~~~l~~R~la~~s~------v~~~~i~~g~l~~~e~~~ 91 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQIALNAALNGG--YPVLYFSLEMSEEELAARLLARLSG------VPYNKIRSGDLSDEEFER 91 (259)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTTS--SEEEEEESSS-HHHHHHHHHHHHHT------STHHHHHCCGCHHHHHHH
T ss_pred cEEEEEecccCCchHHHHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHHhhc------chhhhhhccccCHHHHHH
Confidence 34889999999999987776766665433 4788888 444444333222211 11111111111112111
Q ss_pred ------HhcCCCeEE-EEc----hHHHHHhHhcCCccccccceEEecccccccCC----CcHHHHHHHHHHCC-----CC
Q 011079 234 ------RLYQPVHLL-VGT----PGRILDLSKKGVCILKDCSMLVMDEADKLLSP----EFQPSVEQLIRFLP-----AN 293 (494)
Q Consensus 234 ------~~~~~~~Il-v~T----~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~----~~~~~~~~~~~~~~-----~~ 293 (494)
.+.. ..+. ..+ ++.+...+........++++||||=.|.+... .....+..+...+. .+
T Consensus 92 ~~~~~~~l~~-~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~ 170 (259)
T PF03796_consen 92 LQAAAEKLSD-LPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELN 170 (259)
T ss_dssp HHHHHHHHHT-SEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhh-CcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 1222 2333 333 33444444332222367899999999987652 23334444432221 25
Q ss_pred CcEEEEEee
Q 011079 294 RQILMFSAT 302 (494)
Q Consensus 294 ~~~i~~SAT 302 (494)
..+|++|..
T Consensus 171 i~vi~~sQl 179 (259)
T PF03796_consen 171 IPVIALSQL 179 (259)
T ss_dssp SEEEEEEEB
T ss_pred CeEEEcccc
Confidence 666666655
No 416
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.59 E-value=0.21 Score=44.44 Aligned_cols=40 Identities=30% Similarity=0.383 Sum_probs=27.4
Q ss_pred CCcHHHHHHHHHHh-cCCcEEEEccCCCchhHHhHHHHHHhh
Q 011079 142 RPSPIQEESIPIAL-TGSDILARAKNGTGKTAAFCIPALEKI 182 (494)
Q Consensus 142 ~~~~~Q~~~i~~~~-~~~~~ii~~~TGsGKT~~~~~~~l~~l 182 (494)
.+.+-+.+.+.... .+..++++|+||||||+.. ..++..+
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll-~aL~~~i 49 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL-NALLAFI 49 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhc
Confidence 35566666666555 4567999999999999863 3344443
No 417
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=93.59 E-value=0.14 Score=50.56 Aligned_cols=61 Identities=23% Similarity=0.268 Sum_probs=42.8
Q ss_pred CcccccccccCCCCcccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCC
Q 011079 107 TRYRTEDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN 186 (494)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~ 186 (494)
..++...+.+.-..++++|.|++.+.+.|.+. .+.+++.|++|+|||+- ..++.+.+...+
T Consensus 231 d~~EITavRPvvk~~ledY~L~dkl~eRL~er------------------aeGILIAG~PGaGKsTF-aqAlAefy~~~G 291 (604)
T COG1855 231 DRWEITAVRPVVKLSLEDYGLSDKLKERLEER------------------AEGILIAGAPGAGKSTF-AQALAEFYASQG 291 (604)
T ss_pred CceEEEEEeeeEEechhhcCCCHHHHHHHHhh------------------hcceEEecCCCCChhHH-HHHHHHHHHhcC
Confidence 33333444444556789999999999998763 13389999999999984 555666665544
No 418
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.54 E-value=0.2 Score=43.60 Aligned_cols=52 Identities=13% Similarity=0.314 Sum_probs=38.0
Q ss_pred cccceEEecccccccCCCc--HHHHHHHHHHCCCCCcEEEEEeecCcchHHHHH
Q 011079 261 KDCSMLVMDEADKLLSPEF--QPSVEQLIRFLPANRQILMFSATFPVTVKDFKD 312 (494)
Q Consensus 261 ~~~~~iViDEah~~~~~~~--~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~ 312 (494)
..+++||+||+-..++.++ ...+..++...|+..-+|++.-.+|+.+.+.++
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 5789999999987655554 356677888888888777777777766665544
No 419
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.46 E-value=0.19 Score=49.46 Aligned_cols=42 Identities=17% Similarity=0.308 Sum_probs=25.8
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHH
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTREL 200 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~l 200 (494)
+..++++||||||||+. +..++..+.... ..+++.+-...+.
T Consensus 122 ~g~ili~G~tGSGKTT~-l~al~~~i~~~~-~~~i~tiEdp~E~ 163 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTT-LASMIDYINKNA-AGHIITIEDPIEY 163 (343)
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHhhCcCC-CCEEEEEcCChhh
Confidence 34589999999999997 344555444322 2356665543443
No 420
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.44 E-value=0.39 Score=40.63 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=23.8
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHC
Q 011079 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFL 290 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~ 290 (494)
..+.+++++||.-.-++......+..+++.+
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc
Confidence 4567899999998777766667777777766
No 421
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.41 E-value=0.12 Score=49.10 Aligned_cols=44 Identities=27% Similarity=0.328 Sum_probs=29.5
Q ss_pred hcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHH
Q 011079 155 LTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELA 201 (494)
Q Consensus 155 ~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la 201 (494)
..+..++++|+||||||+. +..++..+... ..+++++-...++.
T Consensus 125 ~~~~~ili~G~tGSGKTT~-l~all~~i~~~--~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTL-LNALLEEIPPE--DERIVTIEDPPELR 168 (270)
T ss_dssp HTTEEEEEEESTTSSHHHH-HHHHHHHCHTT--TSEEEEEESSS-S-
T ss_pred ccceEEEEECCCccccchH-HHHHhhhcccc--ccceEEecccccee
Confidence 3456799999999999997 45556665554 23667776665553
No 422
>PHA00012 I assembly protein
Probab=93.39 E-value=0.94 Score=43.31 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=20.5
Q ss_pred EEEEccCCCchhHHhHHHHHHhhhcC
Q 011079 160 ILARAKNGTGKTAAFCIPALEKIDQD 185 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~ 185 (494)
-++.|..|||||+.++.-+...+.++
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcC
Confidence 57899999999998777666666543
No 423
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.38 E-value=0.16 Score=52.33 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=27.8
Q ss_pred cHHHHHHHHHHhcCCc--EEEEccCCCchhHHhHHHHHHhhhc
Q 011079 144 SPIQEESIPIALTGSD--ILARAKNGTGKTAAFCIPALEKIDQ 184 (494)
Q Consensus 144 ~~~Q~~~i~~~~~~~~--~ii~~~TGsGKT~~~~~~~l~~l~~ 184 (494)
.+-|.+.+..+..... ++++||||||||+. +..++..+..
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~l~~ 268 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSRLNT 268 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhccCC
Confidence 5566667766665433 78999999999997 3445555543
No 424
>PRK06904 replicative DNA helicase; Validated
Probab=93.32 E-value=0.98 Score=46.40 Aligned_cols=36 Identities=17% Similarity=0.085 Sum_probs=23.1
Q ss_pred CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc
Q 011079 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (494)
.=+||.|.||.|||...+-.+....... +..+++.+
T Consensus 222 ~LiiIaarPg~GKTafalnia~~~a~~~--g~~Vl~fS 257 (472)
T PRK06904 222 DLIIVAARPSMGKTTFAMNLCENAAMAS--EKPVLVFS 257 (472)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHhc--CCeEEEEe
Confidence 3488899999999986544444333222 23567766
No 425
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=93.23 E-value=0.16 Score=53.54 Aligned_cols=39 Identities=26% Similarity=0.344 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHhcCC--cEEEEccCCCchhHHhHHHHHHhhh
Q 011079 144 SPIQEESIPIALTGS--DILARAKNGTGKTAAFCIPALEKID 183 (494)
Q Consensus 144 ~~~Q~~~i~~~~~~~--~~ii~~~TGsGKT~~~~~~~l~~l~ 183 (494)
.+-|.+.+..++... -++++||||||||+. +..++..+.
T Consensus 301 ~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~~ 341 (564)
T TIGR02538 301 EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNILN 341 (564)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhhC
Confidence 456666666655433 378999999999997 355666654
No 426
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.20 E-value=0.2 Score=47.20 Aligned_cols=36 Identities=19% Similarity=0.066 Sum_probs=26.8
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (494)
|.-++|.|++|+|||+..+..+...+.. +.++++++
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~---Ge~vlyis 71 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR---GNPVLFVT 71 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC---CCcEEEEE
Confidence 4558999999999999877666665443 33678877
No 427
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=93.16 E-value=0.99 Score=39.43 Aligned_cols=53 Identities=15% Similarity=0.296 Sum_probs=38.5
Q ss_pred cccceEEecccccccCCCc--HHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHh
Q 011079 261 KDCSMLVMDEADKLLSPEF--QPSVEQLIRFLPANRQILMFSATFPVTVKDFKDK 313 (494)
Q Consensus 261 ~~~~~iViDEah~~~~~~~--~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~ 313 (494)
..+++||+||.-..+..++ ...+..++...|...-+|+.--.+|+.+.+.++.
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 3699999999987666554 4567777887777777777666677776666553
No 428
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=93.14 E-value=0.98 Score=44.71 Aligned_cols=111 Identities=18% Similarity=0.086 Sum_probs=50.5
Q ss_pred EEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHH-HHHHHHH---HHHHHhcc-CCcEEEEEECCCChHHHHHHh
Q 011079 161 LARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE-LALQTSQ---VCKELGKH-LNIQVMVTTGGTSLKDDIMRL 235 (494)
Q Consensus 161 ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~-la~q~~~---~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~ 235 (494)
++.++.|+|||+.....++..+...+....++++ |+.. +...+.. ....+... .............. +
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 73 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKII------L 73 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEEE------E
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcEE------e
Confidence 4778999999999877777776655543455555 5554 4443222 33333333 12222211111110 1
Q ss_pred cCCCeEEEEchHHH--HHhHhcCCccccccceEEecccccccCCCcHHHH
Q 011079 236 YQPVHLLVGTPGRI--LDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSV 283 (494)
Q Consensus 236 ~~~~~Ilv~T~~~l--~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~ 283 (494)
.++..|.+.+...- ..-+. -..+++|++||+-.+.+..+...+
T Consensus 74 ~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~ 118 (384)
T PF03237_consen 74 PNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELI 118 (384)
T ss_dssp TTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHH
T ss_pred cCceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHH
Confidence 24555666653321 01111 256889999998876544344333
No 429
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=93.13 E-value=0.98 Score=49.69 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=14.1
Q ss_pred CcEEEEccCCCchhHH
Q 011079 158 SDILARAKNGTGKTAA 173 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~ 173 (494)
..+++.||+|+|||+.
T Consensus 348 ~~lll~GppG~GKT~l 363 (775)
T TIGR00763 348 PILCLVGPPGVGKTSL 363 (775)
T ss_pred ceEEEECCCCCCHHHH
Confidence 4589999999999986
No 430
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=92.85 E-value=0.93 Score=42.78 Aligned_cols=16 Identities=25% Similarity=0.212 Sum_probs=14.3
Q ss_pred CcEEEEccCCCchhHH
Q 011079 158 SDILARAKNGTGKTAA 173 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~ 173 (494)
+++++.|++|||||+.
T Consensus 112 ~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 112 LNTLIISPPQCGKTTL 127 (270)
T ss_pred eEEEEEcCCCCCHHHH
Confidence 4689999999999985
No 431
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=92.77 E-value=0.55 Score=41.33 Aligned_cols=40 Identities=20% Similarity=0.338 Sum_probs=27.2
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEE
Q 011079 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMF 299 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (494)
+.+.+++++||.-.-++......+..++..+....-+|+.
T Consensus 114 ~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~ 153 (178)
T cd03247 114 LQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWI 153 (178)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 5677999999998777766666666776666444333343
No 432
>PRK05973 replicative DNA helicase; Provisional
Probab=92.77 E-value=0.24 Score=45.58 Aligned_cols=55 Identities=20% Similarity=0.102 Sum_probs=34.8
Q ss_pred HHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011079 153 IALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL 211 (494)
Q Consensus 153 ~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (494)
-+..|.-++|.|++|+|||+..+..+.+.... +.+++|++-- +-..++.+.+..+
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---Ge~vlyfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKS---GRTGVFFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEEEe-CCHHHHHHHHHHc
Confidence 33445668999999999999877666666543 2367777621 1234445555544
No 433
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.73 E-value=1.1 Score=45.40 Aligned_cols=71 Identities=21% Similarity=0.213 Sum_probs=41.2
Q ss_pred ccccCCCHHHHHHHHHCCCCCCcHHHHHHHH----HHhc----C----CcEEEEccCCCchhHHhHHHHHHhhhcCCCce
Q 011079 122 FEDYFLKRELLMGIFEKGFERPSPIQEESIP----IALT----G----SDILARAKNGTGKTAAFCIPALEKIDQDNNVI 189 (494)
Q Consensus 122 ~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~----~~~~----~----~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~ 189 (494)
-+.|+.+++.++.....|.-...+.=...+. .+.. . ..+++.||.|||||..+...++. ..-+
T Consensus 491 kPAFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FP 565 (744)
T KOG0741|consen 491 KPAFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS-----SDFP 565 (744)
T ss_pred CcccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh-----cCCC
Confidence 3456777888888777765433332222222 1111 1 24899999999999754333332 2334
Q ss_pred EEEEEcCc
Q 011079 190 QVVILVPT 197 (494)
Q Consensus 190 ~~lil~P~ 197 (494)
.+-|+.|.
T Consensus 566 FvKiiSpe 573 (744)
T KOG0741|consen 566 FVKIISPE 573 (744)
T ss_pred eEEEeChH
Confidence 66677775
No 434
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=92.73 E-value=0.28 Score=49.18 Aligned_cols=16 Identities=38% Similarity=0.466 Sum_probs=14.4
Q ss_pred CcEEEEccCCCchhHH
Q 011079 158 SDILARAKNGTGKTAA 173 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~ 173 (494)
+.+++.||+|+|||+.
T Consensus 166 ~gvLL~GppGtGKT~l 181 (389)
T PRK03992 166 KGVLLYGPPGTGKTLL 181 (389)
T ss_pred CceEEECCCCCChHHH
Confidence 4599999999999986
No 435
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.70 E-value=0.92 Score=44.09 Aligned_cols=131 Identities=11% Similarity=0.144 Sum_probs=77.7
Q ss_pred EEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCcEEEEEECCCChHHHHHHhcC
Q 011079 160 ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQ 237 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 237 (494)
++++|--|+|||+.....++.+ .. .+.++.++| -.|+-| .+.++..+...++.+...+...+.
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~-kk--kG~K~~LvcaDTFRagA---fDQLkqnA~k~~iP~ygsyte~dp--------- 168 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYY-KK--KGYKVALVCADTFRAGA---FDQLKQNATKARVPFYGSYTEADP--------- 168 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHH-Hh--cCCceeEEeecccccch---HHHHHHHhHhhCCeeEecccccch---------
Confidence 7789999999999755444433 22 233556666 445555 444444444445554332111111
Q ss_pred CCeEEEEchHHHHHhHhcCCccccccceEEecccccccC-CCcHHHHHHHHHHCCCCCcEEEEEeecCcchHHHHHhhc
Q 011079 238 PVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS-PEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYL 315 (494)
Q Consensus 238 ~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~-~~~~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~~~~ 315 (494)
+.|+. .-..+ +.-.+|++||+|=.-|... .++...+..+.+.+.++.-++.|-|++....+.....|-
T Consensus 169 ---v~ia~-----egv~~--fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk 237 (483)
T KOG0780|consen 169 ---VKIAS-----EGVDR--FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFK 237 (483)
T ss_pred ---HHHHH-----HHHHH--HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHH
Confidence 01111 11111 2246789999998876543 346677788888888888888899998776666666553
No 436
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=92.67 E-value=0.53 Score=47.14 Aligned_cols=18 Identities=33% Similarity=0.346 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHh
Q 011079 157 GSDILARAKNGTGKTAAF 174 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (494)
.+.+++.||+|+|||+.+
T Consensus 179 pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 466999999999999863
No 437
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.66 E-value=0.24 Score=43.48 Aligned_cols=41 Identities=12% Similarity=0.276 Sum_probs=26.5
Q ss_pred ccc--cceEEecccccccCCCcHHHHHHHHHHCCC-CCcEEEEE
Q 011079 260 LKD--CSMLVMDEADKLLSPEFQPSVEQLIRFLPA-NRQILMFS 300 (494)
Q Consensus 260 l~~--~~~iViDEah~~~~~~~~~~~~~~~~~~~~-~~~~i~~S 300 (494)
+.+ .+++++||.-.-++......+..++..+.. ...+|+.|
T Consensus 103 ~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivS 146 (176)
T cd03238 103 FSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIE 146 (176)
T ss_pred hhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 455 789999999877776666666666665432 34344433
No 438
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=92.62 E-value=0.32 Score=45.29 Aligned_cols=30 Identities=23% Similarity=0.127 Sum_probs=21.3
Q ss_pred HhcCCcEEEEccCCCchhHHhHHHHHHhhhc
Q 011079 154 ALTGSDILARAKNGTGKTAAFCIPALEKIDQ 184 (494)
Q Consensus 154 ~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~ 184 (494)
+-.|+.+++.|+.|+|||+. +..++..+..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL-lr~I~n~l~~ 42 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL-LQSIANAITK 42 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH-HHHHHhcccc
Confidence 34678899999999999985 3334444433
No 439
>CHL00176 ftsH cell division protein; Validated
Probab=92.41 E-value=0.34 Score=51.54 Aligned_cols=17 Identities=35% Similarity=0.389 Sum_probs=14.7
Q ss_pred CcEEEEccCCCchhHHh
Q 011079 158 SDILARAKNGTGKTAAF 174 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (494)
+.+++.||+|+|||+.+
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45999999999999863
No 440
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=92.40 E-value=0.91 Score=46.99 Aligned_cols=127 Identities=13% Similarity=0.160 Sum_probs=76.8
Q ss_pred CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHH-HHhccCCcEEEEEECCCChHHHHHHhc
Q 011079 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCK-ELGKHLNIQVMVTTGGTSLKDDIMRLY 236 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~ 236 (494)
+-.+.--|--.|||.. +.|++..+...-.+.++.|++-.+..++-+..++. ++...++-+.....
T Consensus 203 kaTVFLVPRRHGKTWf-~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~------------- 268 (668)
T PHA03372 203 KATVFLVPRRHGKTWF-IIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIEN------------- 268 (668)
T ss_pred cceEEEecccCCceeh-HHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeee-------------
Confidence 4466777999999985 77888887776677799999988877766544332 22222221111100
Q ss_pred CCCeEEEEchHH-----HHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHC-CCCCcEEEEEee
Q 011079 237 QPVHLLVGTPGR-----ILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFL-PANRQILMFSAT 302 (494)
Q Consensus 237 ~~~~Ilv~T~~~-----l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~-~~~~~~i~~SAT 302 (494)
++..|.+.-|+. +......+...-.+++++++||||-+. ...+..++..+ .++.++|+.|.|
T Consensus 269 k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 269 KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred cCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeCC
Confidence 112333333321 112233444556789999999999763 33445555544 457889999987
No 441
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.39 E-value=1.3 Score=48.32 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchhHHh
Q 011079 158 SDILARAKNGTGKTAAF 174 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (494)
.++++.||+|+|||+.+
T Consensus 204 ~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CceEEECCCCCCHHHHH
Confidence 46999999999999874
No 442
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.34 E-value=0.62 Score=47.57 Aligned_cols=51 Identities=24% Similarity=0.213 Sum_probs=32.6
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL 211 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (494)
|.-+++.|++|+|||+..+..+...... +.+++|+..- +-..|+...+.++
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~---g~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKN---QMKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEECc-CCHHHHHHHHHHc
Confidence 3458999999999999866555443332 2368888753 3345555555544
No 443
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=92.33 E-value=0.6 Score=50.04 Aligned_cols=90 Identities=17% Similarity=0.234 Sum_probs=72.9
Q ss_pred hhhhHHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHc-CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcCc
Q 011079 340 EERQKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITEL-GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL 416 (494)
Q Consensus 340 ~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~~ 416 (494)
....|.+....++... .+..+||.+|.+....++.+.|..+ +.++..+||++++.+|...+.+..+|+.+|+|.|..
T Consensus 226 TGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRS 305 (730)
T COG1198 226 TGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRS 305 (730)
T ss_pred CCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEech
Confidence 3445656656555443 3458999999999999999988876 889999999999999999999999999999999976
Q ss_pred ccccCCCCCCCEEE
Q 011079 417 FTRGIDIQAVNVVI 430 (494)
Q Consensus 417 ~~~Gidi~~v~~VI 430 (494)
+- -.-++++..+|
T Consensus 306 Al-F~Pf~~LGLII 318 (730)
T COG1198 306 AL-FLPFKNLGLII 318 (730)
T ss_pred hh-cCchhhccEEE
Confidence 43 35677888777
No 444
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=92.30 E-value=0.65 Score=48.37 Aligned_cols=68 Identities=18% Similarity=0.330 Sum_probs=55.2
Q ss_pred EEEEecChhHHHHHHHHHHHc-----CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcC-----ccccc-CCCCCCCE
Q 011079 360 SIIFCNSVNRVELLAKKITEL-----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD-----LFTRG-IDIQAVNV 428 (494)
Q Consensus 360 ~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~-----~~~~G-idi~~v~~ 428 (494)
+||++||++.|.++++.+... ++.+..++|+++...+...++. | .+|||||+ .+.++ +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999998887764 4678999999988777655544 6 89999998 34555 89999999
Q ss_pred EEE
Q 011079 429 VIN 431 (494)
Q Consensus 429 VI~ 431 (494)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 883
No 445
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=92.28 E-value=2.2 Score=42.09 Aligned_cols=46 Identities=17% Similarity=0.136 Sum_probs=28.4
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHC-CCCCcEEEEEeecCcc
Q 011079 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFL-PANRQILMFSATFPVT 306 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~-~~~~~~i~~SATl~~~ 306 (494)
.....+|++||.|- .+..-...+..++..+ ....-+|++|-+.|.+
T Consensus 125 ~~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 125 AKESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred HhcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 44567999999994 2333344455555443 4466677777777644
No 446
>PRK09087 hypothetical protein; Validated
Probab=92.26 E-value=0.4 Score=44.07 Aligned_cols=39 Identities=10% Similarity=0.080 Sum_probs=23.5
Q ss_pred ceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEeecC
Q 011079 264 SMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFP 304 (494)
Q Consensus 264 ~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SATl~ 304 (494)
++|++|++|.+.. -...+-.++..+......++++++.+
T Consensus 89 ~~l~iDDi~~~~~--~~~~lf~l~n~~~~~g~~ilits~~~ 127 (226)
T PRK09087 89 GPVLIEDIDAGGF--DETGLFHLINSVRQAGTSLLMTSRLW 127 (226)
T ss_pred CeEEEECCCCCCC--CHHHHHHHHHHHHhCCCeEEEECCCC
Confidence 4799999997632 24455566655555444566666543
No 447
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.20 E-value=0.22 Score=44.74 Aligned_cols=35 Identities=14% Similarity=0.443 Sum_probs=22.4
Q ss_pred EEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcC
Q 011079 160 ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVP 196 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 196 (494)
++++||||||||+.. ..++..+.... +.+++.+.-
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~~~~-~~~i~t~e~ 38 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYINKNK-THHILTIED 38 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhhhcC-CcEEEEEcC
Confidence 789999999999973 44455544332 225555553
No 448
>PRK10689 transcription-repair coupling factor; Provisional
Probab=92.17 E-value=0.85 Score=52.02 Aligned_cols=76 Identities=8% Similarity=0.098 Sum_probs=63.5
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHc----CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcC-cccccCCCCCCCEEE
Q 011079 356 QINQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD-LFTRGIDIQAVNVVI 430 (494)
Q Consensus 356 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~-~~~~Gidi~~v~~VI 430 (494)
...+++|.+|+...+.+.++.+.+. ++.+..+++..+..++..+++...+|..+|||+|. .+...+.+.++.+||
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4568999999999999999888763 46778899999999999999999999999999996 445567778888877
Q ss_pred E
Q 011079 431 N 431 (494)
Q Consensus 431 ~ 431 (494)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 3
No 449
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.14 E-value=0.42 Score=52.25 Aligned_cols=16 Identities=38% Similarity=0.436 Sum_probs=14.2
Q ss_pred CcEEEEccCCCchhHH
Q 011079 158 SDILARAKNGTGKTAA 173 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~ 173 (494)
+.+++.||+|||||+.
T Consensus 488 ~giLL~GppGtGKT~l 503 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLL 503 (733)
T ss_pred ceEEEECCCCCCHHHH
Confidence 4589999999999986
No 450
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.11 E-value=0.5 Score=41.27 Aligned_cols=40 Identities=28% Similarity=0.483 Sum_probs=28.8
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 011079 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 300 (494)
..+.+++++||--.-++......+..++..+... ..++++
T Consensus 112 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~-~tii~~ 151 (171)
T cd03228 112 LRDPPILILDEATSALDPETEALILEALRALAKG-KTVIVI 151 (171)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCC-CEEEEE
Confidence 4567899999998877777777777777776544 344444
No 451
>PRK07004 replicative DNA helicase; Provisional
Probab=92.09 E-value=0.77 Score=47.06 Aligned_cols=43 Identities=23% Similarity=0.219 Sum_probs=27.0
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc---CcHHHH
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV---PTRELA 201 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~---P~~~la 201 (494)
|.-++|.|.||+|||...+-.+.......+ ..+++.+ +...|+
T Consensus 213 g~liviaarpg~GKT~~al~ia~~~a~~~~--~~v~~fSlEM~~~ql~ 258 (460)
T PRK07004 213 GELIIVAGRPSMGKTAFSMNIGEYVAVEYG--LPVAVFSMEMPGTQLA 258 (460)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHcC--CeEEEEeCCCCHHHHH
Confidence 344888999999999875555544333322 2566666 554554
No 452
>PRK13764 ATPase; Provisional
Probab=92.08 E-value=0.32 Score=50.99 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=20.6
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhc
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEKIDQ 184 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~ 184 (494)
.+.++++|+||||||+. +..++..+..
T Consensus 257 ~~~ILIsG~TGSGKTTl-l~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTF-AQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHhh
Confidence 45699999999999996 4556666553
No 453
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=92.07 E-value=0.27 Score=50.38 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=23.8
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCC-CCcEEEEEee
Q 011079 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPA-NRQILMFSAT 302 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~-~~~~i~~SAT 302 (494)
-.++++.||||+|.+....|. .+++.+.. ...+++.=||
T Consensus 117 ~~ryKVyiIDEvHMLS~~afN----ALLKTLEEPP~hV~FIlAT 156 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAFN----ALLKTLEEPPSHVKFILAT 156 (515)
T ss_pred cccceEEEEecHHhhhHHHHH----HHhcccccCccCeEEEEec
Confidence 578999999999987655443 44444422 2224444455
No 454
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=92.07 E-value=0.31 Score=48.01 Aligned_cols=28 Identities=25% Similarity=0.164 Sum_probs=20.4
Q ss_pred cCCcEEEEccCCCchhHHhHHHHHHhhhc
Q 011079 156 TGSDILARAKNGTGKTAAFCIPALEKIDQ 184 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~ 184 (494)
.|+..+|.||.|+|||+. +..+...+..
T Consensus 168 kGQR~lIvgppGvGKTTL-aK~Ian~I~~ 195 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVL-LQNIANSITT 195 (416)
T ss_pred cCceEEEeCCCCCChhHH-HHHHHHHHHh
Confidence 678899999999999975 3334444443
No 455
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.05 E-value=0.95 Score=49.25 Aligned_cols=19 Identities=32% Similarity=0.317 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchhHHhH
Q 011079 157 GSDILARAKNGTGKTAAFC 175 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (494)
..++++.||+|+|||..+-
T Consensus 207 ~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3469999999999998743
No 456
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=92.01 E-value=0.28 Score=47.95 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhHHhH
Q 011079 158 SDILARAKNGTGKTAAFC 175 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (494)
..+++.||+|+|||+.+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 459999999999998743
No 457
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.98 E-value=0.48 Score=49.19 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=29.3
Q ss_pred CCCcccccCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCcEEEEccCCCchhHH
Q 011079 118 KGNEFEDYFLKRELLMGIFEK---GFERPSPIQEESIPIALTGSDILARAKNGTGKTAA 173 (494)
Q Consensus 118 ~~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~ii~~~TGsGKT~~ 173 (494)
+.-+|.+.+=-+++.+.|+.. ..+.|-.+..-.+ ..-+-+++.||+|||||++
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi---~ppkGVLlyGPPGC~KT~l 484 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI---SPPKGVLLYGPPGCGKTLL 484 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC---CCCceEEEECCCCcchHHH
Confidence 334577776555555555432 1112222221111 1225699999999999987
No 458
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.91 E-value=1.1 Score=44.45 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=14.4
Q ss_pred cEEEEccCCCchhHHhH
Q 011079 159 DILARAKNGTGKTAAFC 175 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (494)
.+++.||.|+|||+.+.
T Consensus 41 ~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 41 ALLFCGPRGVGKTTCAR 57 (367)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999998643
No 459
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.91 E-value=0.27 Score=45.17 Aligned_cols=23 Identities=13% Similarity=0.319 Sum_probs=17.3
Q ss_pred EEEEccCCCchhHHhHHHHHHhhh
Q 011079 160 ILARAKNGTGKTAAFCIPALEKID 183 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~ 183 (494)
+|++|+|||||++. +..++.+-.
T Consensus 130 viiVGaTGSGKSTt-mAaMi~yRN 152 (375)
T COG5008 130 VIIVGATGSGKSTT-MAAMIGYRN 152 (375)
T ss_pred EEEECCCCCCchhh-HHHHhcccc
Confidence 88999999999997 444554433
No 460
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=91.84 E-value=0.57 Score=48.25 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=14.5
Q ss_pred CcEEEEccCCCchhHH
Q 011079 158 SDILARAKNGTGKTAA 173 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~ 173 (494)
+.+++.||+|+|||+.
T Consensus 217 ~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 217 KGVLLYGPPGCGKTLI 232 (512)
T ss_pred cceEEECCCCCcHHHH
Confidence 5699999999999986
No 461
>PRK04328 hypothetical protein; Provisional
Probab=91.77 E-value=0.29 Score=45.79 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=34.0
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHHHHHHHHHHHHh
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELG 212 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~ 212 (494)
|..++|.|++|+|||+..+..+...+..+. .+++++ +.+-..++.+.++.++
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge---~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGE---PGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCC---cEEEEE-eeCCHHHHHHHHHHcC
Confidence 455899999999999877777776654433 567776 2233344455555554
No 462
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=91.72 E-value=0.5 Score=46.26 Aligned_cols=63 Identities=21% Similarity=0.250 Sum_probs=39.1
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHhc-CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHH
Q 011079 132 LMGIFEKGFERPSPIQEESIPIALT-GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTREL 200 (494)
Q Consensus 132 ~~~l~~~~~~~~~~~Q~~~i~~~~~-~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~l 200 (494)
+..+.+.|+ +.+.+.+.+..+.. +.+++++|+||||||+. +..++..+... .+++++-.+.++
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~~~i~~~---~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALLALVAPD---ERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHccCCCC---CcEEEECCccee
Confidence 445555554 44566666665554 46799999999999986 33344444322 255666666565
No 463
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=91.65 E-value=1.2 Score=43.14 Aligned_cols=52 Identities=8% Similarity=0.139 Sum_probs=30.1
Q ss_pred HHHHhHhcCCccccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEee
Q 011079 248 RILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSAT 302 (494)
Q Consensus 248 ~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 302 (494)
.+.+.+..... ....+++|||+||.|... -...+.+++..-| +..+|++|..
T Consensus 111 ~i~~~l~~~p~-~~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 111 EIKRFLSRPPL-EAPRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred HHHHHHccCcc-cCCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEECC
Confidence 44444444332 467899999999988432 2344555555544 5545554443
No 464
>PRK13695 putative NTPase; Provisional
Probab=91.63 E-value=2.1 Score=37.36 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=17.2
Q ss_pred cEEEEccCCCchhHHhHHHHHHhhh
Q 011079 159 DILARAKNGTGKTAAFCIPALEKID 183 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~ 183 (494)
.+++.|++|+|||+.... ++..+.
T Consensus 2 ~i~ltG~~G~GKTTll~~-i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLK-IAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHH
Confidence 378999999999997543 333343
No 465
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=91.63 E-value=0.88 Score=42.20 Aligned_cols=45 Identities=27% Similarity=0.238 Sum_probs=28.7
Q ss_pred cEEEEccCCCchhHHhHHHHHHhhh---------cCCCceEEEEEc---CcHHHHHH
Q 011079 159 DILARAKNGTGKTAAFCIPALEKID---------QDNNVIQVVILV---PTRELALQ 203 (494)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~---------~~~~~~~~lil~---P~~~la~q 203 (494)
-.++.|+.|+|||+..+..++.... ....+.+|+|++ |..++...
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~R 59 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRR 59 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHH
Confidence 3689999999999886665554321 112345788888 54444333
No 466
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.59 E-value=0.14 Score=48.35 Aligned_cols=18 Identities=39% Similarity=0.442 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhHHh
Q 011079 157 GSDILARAKNGTGKTAAF 174 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (494)
..++++.||||||||+.+
T Consensus 97 KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 97 KSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eccEEEECCCCCcHHHHH
Confidence 356999999999999854
No 467
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=91.59 E-value=0.21 Score=45.75 Aligned_cols=39 Identities=21% Similarity=0.373 Sum_probs=22.5
Q ss_pred ceEEeccccccc-C----CCcHHHHHHHHHHCCC-CCcEEEEEee
Q 011079 264 SMLVMDEADKLL-S----PEFQPSVEQLIRFLPA-NRQILMFSAT 302 (494)
Q Consensus 264 ~~iViDEah~~~-~----~~~~~~~~~~~~~~~~-~~~~i~~SAT 302 (494)
-+||+||+|.+. . ..+...+..++..... ....++++++
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S 164 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGS 164 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEES
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECC
Confidence 689999999987 2 2344455555555322 2234556666
No 468
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=91.56 E-value=0.38 Score=45.11 Aligned_cols=48 Identities=23% Similarity=0.084 Sum_probs=29.7
Q ss_pred HHHHHhcC-----CcEEEEccCCCchhHHhHHHHHHhhhc---CCCceEEEEEcCc
Q 011079 150 SIPIALTG-----SDILARAKNGTGKTAAFCIPALEKIDQ---DNNVIQVVILVPT 197 (494)
Q Consensus 150 ~i~~~~~~-----~~~ii~~~TGsGKT~~~~~~~l~~l~~---~~~~~~~lil~P~ 197 (494)
.+..++.| .-+=++|+.|||||...+..++..... .+.+.+++|+.-.
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe 81 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTE 81 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESS
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCC
Confidence 45555554 224589999999997655444444322 2334588998833
No 469
>PF12846 AAA_10: AAA-like domain
Probab=91.56 E-value=0.23 Score=47.67 Aligned_cols=42 Identities=29% Similarity=0.411 Sum_probs=27.4
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHH
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELA 201 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la 201 (494)
+.+++|.|+||||||+... .++..+...+ ..++|+=|..+..
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~~g--~~~~i~D~~g~~~ 42 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIRRG--PRVVIFDPKGDYS 42 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHcC--CCEEEEcCCchHH
Confidence 3578999999999998865 4444444333 3556665654443
No 470
>PRK08506 replicative DNA helicase; Provisional
Probab=91.53 E-value=1.3 Score=45.60 Aligned_cols=35 Identities=26% Similarity=0.235 Sum_probs=24.5
Q ss_pred CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc
Q 011079 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (494)
.-++|.|.||.|||...+-.+...... +..+++++
T Consensus 193 ~LivIaarpg~GKT~fal~ia~~~~~~---g~~V~~fS 227 (472)
T PRK08506 193 DLIIIAARPSMGKTTLCLNMALKALNQ---DKGVAFFS 227 (472)
T ss_pred ceEEEEcCCCCChHHHHHHHHHHHHhc---CCcEEEEe
Confidence 448889999999998766666555422 23567776
No 471
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.48 E-value=3.8 Score=37.86 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=31.0
Q ss_pred cccCCCCcccccCCCHHHHHHHHHC-CCCCCcHHHHHHHHHHh-cCCcEEEEccCCCchhHH
Q 011079 114 VTATKGNEFEDYFLKRELLMGIFEK-GFERPSPIQEESIPIAL-TGSDILARAKNGTGKTAA 173 (494)
Q Consensus 114 ~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~~Q~~~i~~~~-~~~~~ii~~~TGsGKT~~ 173 (494)
+...+.-.+.+.+-..+-++.+++- ...-+.| +.-+..-. --+.+++.||+|+|||+|
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~p--erfv~lgidppkgvllygppgtgktl~ 227 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHP--ERFVNLGIDPPKGVLLYGPPGTGKTLC 227 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCH--HHHhhcCCCCCCceEEeCCCCCchhHH
Confidence 3344455566666555555555432 1111111 11121111 125699999999999998
No 472
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=91.47 E-value=0.37 Score=42.48 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=24.2
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCC
Q 011079 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPA 292 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~ 292 (494)
+.+.+++++||.-.-++......+..++..+..
T Consensus 113 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~ 145 (180)
T cd03214 113 AQEPPILLLDEPTSHLDIAHQIELLELLRRLAR 145 (180)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence 456789999999877776666677777666533
No 473
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.45 E-value=0.28 Score=47.38 Aligned_cols=55 Identities=24% Similarity=0.247 Sum_probs=35.8
Q ss_pred CCcHHHHHHH-HHHhcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHH
Q 011079 142 RPSPIQEESI-PIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTREL 200 (494)
Q Consensus 142 ~~~~~Q~~~i-~~~~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~l 200 (494)
.+.+.+..-+ -++..+++++++|+||||||+. +.+++..+.... +++.+--+.++
T Consensus 127 t~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~~~---rivtIEdt~E~ 182 (312)
T COG0630 127 TISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPPEE---RIVTIEDTPEL 182 (312)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCchh---cEEEEeccccc
Confidence 4556665444 4455678899999999999996 555555544332 56665555554
No 474
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=91.44 E-value=0.49 Score=43.41 Aligned_cols=41 Identities=22% Similarity=0.053 Sum_probs=26.8
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcC---CCceEEEEEcCc
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEKIDQD---NNVIQVVILVPT 197 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~---~~~~~~lil~P~ 197 (494)
|.-+.|.|++|+|||+..+..+....... +....++++..-
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC
Confidence 45589999999999997665555443332 112467777743
No 475
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=91.42 E-value=1.7 Score=39.07 Aligned_cols=43 Identities=14% Similarity=0.198 Sum_probs=28.5
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHC-CC--CCcEEEEEee
Q 011079 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFL-PA--NRQILMFSAT 302 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~-~~--~~~~i~~SAT 302 (494)
+.+.+++++||...-++......+..++... .. ..+.|++|.-
T Consensus 129 ~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th 174 (198)
T cd03276 129 VMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQ 174 (198)
T ss_pred ccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 3678899999999877766666666655443 22 3456666654
No 476
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=91.38 E-value=1.7 Score=44.43 Aligned_cols=37 Identities=22% Similarity=0.114 Sum_probs=25.0
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (494)
|.-++|.|++|+|||+..+..+.......+ ..+++++
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g--~~vl~~S 231 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIKEG--KPVAFFS 231 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCC--CeEEEEe
Confidence 344889999999999876655555443322 3577776
No 477
>PRK08840 replicative DNA helicase; Provisional
Probab=91.35 E-value=2.2 Score=43.68 Aligned_cols=37 Identities=19% Similarity=0.099 Sum_probs=23.7
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (494)
|.=+++.|.||.|||+-++-.+....... +..+++..
T Consensus 217 g~LiviaarPg~GKTafalnia~~~a~~~--~~~v~~fS 253 (464)
T PRK08840 217 SDLIIVAARPSMGKTTFAMNLCENAAMDQ--DKPVLIFS 253 (464)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHhC--CCeEEEEe
Confidence 34488899999999987554444433222 23566666
No 478
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=91.27 E-value=0.65 Score=50.59 Aligned_cols=40 Identities=15% Similarity=0.340 Sum_probs=26.8
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEE
Q 011079 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMF 299 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (494)
+.+.+++|+||+-.-+|..-...+.+.+..+..+..+|+.
T Consensus 617 l~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiI 656 (694)
T TIGR03375 617 LRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLV 656 (694)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 5677889999998766766666666666665444444443
No 479
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.24 E-value=0.59 Score=40.13 Aligned_cols=42 Identities=21% Similarity=0.363 Sum_probs=26.7
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEe
Q 011079 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSA 301 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 301 (494)
..+.+++++||...-++......+..++..+....+.++++.
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~s 137 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVT 137 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 345789999999987776666666666665533323344443
No 480
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=91.24 E-value=0.49 Score=49.15 Aligned_cols=16 Identities=38% Similarity=0.461 Sum_probs=14.4
Q ss_pred CcEEEEccCCCchhHH
Q 011079 158 SDILARAKNGTGKTAA 173 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~ 173 (494)
+.+++.||+|+|||+.
T Consensus 89 ~giLL~GppGtGKT~l 104 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLL 104 (495)
T ss_pred CcEEEECCCCCCHHHH
Confidence 4599999999999986
No 481
>PRK08006 replicative DNA helicase; Provisional
Probab=91.19 E-value=2.5 Score=43.41 Aligned_cols=36 Identities=19% Similarity=0.074 Sum_probs=23.8
Q ss_pred CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc
Q 011079 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (494)
.-++|.|.+|.|||.-++-.+....... +..|+|.+
T Consensus 225 ~LiiIaarPgmGKTafalnia~~~a~~~--g~~V~~fS 260 (471)
T PRK08006 225 DLIIVAARPSMGKTTFAMNLCENAAMLQ--DKPVLIFS 260 (471)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCeEEEEe
Confidence 3478899999999987655555543332 23566666
No 482
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=91.19 E-value=0.22 Score=43.88 Aligned_cols=41 Identities=24% Similarity=0.434 Sum_probs=27.1
Q ss_pred cccceEEecccccccCCCcHHHHHHHHHHCCC-CCcEEEEEe
Q 011079 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPA-NRQILMFSA 301 (494)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~-~~~~i~~SA 301 (494)
.+.+++++||...-++......+..++..+.. +.++|+.|-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 56789999999987776666666666655433 355555543
No 483
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.18 E-value=1.1 Score=49.19 Aligned_cols=17 Identities=35% Similarity=0.407 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCchhHH
Q 011079 157 GSDILARAKNGTGKTAA 173 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~ 173 (494)
++.+++.||+|+|||+.
T Consensus 212 ~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CceEEEECCCCCChHHH
Confidence 46699999999999985
No 484
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=91.10 E-value=0.36 Score=42.54 Aligned_cols=43 Identities=23% Similarity=0.290 Sum_probs=24.4
Q ss_pred hcCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCcHHHH
Q 011079 155 LTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELA 201 (494)
Q Consensus 155 ~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la 201 (494)
..++++++.|++|+|||..+...+-+ +...+ ..++++. ...|.
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~-~~~~g--~~v~f~~-~~~L~ 87 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANE-AIRKG--YSVLFIT-ASDLL 87 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHH-HHHTT----EEEEE-HHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHH-hccCC--cceeEee-cCcee
Confidence 35677999999999999874443333 33322 3455543 33443
No 485
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.04 E-value=0.18 Score=35.52 Aligned_cols=17 Identities=35% Similarity=0.571 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCchhHH
Q 011079 157 GSDILARAKNGTGKTAA 173 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~ 173 (494)
+...++.|++|||||+.
T Consensus 23 g~~tli~G~nGsGKSTl 39 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTL 39 (62)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 34589999999999996
No 486
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=91.02 E-value=0.11 Score=45.50 Aligned_cols=44 Identities=18% Similarity=0.217 Sum_probs=28.5
Q ss_pred HHhcCCCeEEEEchHHHHHhHhcCCc--cccccceEEecccccccC
Q 011079 233 MRLYQPVHLLVGTPGRILDLSKKGVC--ILKDCSMLVMDEADKLLS 276 (494)
Q Consensus 233 ~~~~~~~~Ilv~T~~~l~~~~~~~~~--~l~~~~~iViDEah~~~~ 276 (494)
+.....++|+|+++..|++-...... ...+-.+|||||||.+.+
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 34446789999999988764322111 234557999999998754
No 487
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=90.99 E-value=0.39 Score=46.44 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=20.0
Q ss_pred HhcCCcEEEEccCCCchhHHhHHHHHHhh
Q 011079 154 ALTGSDILARAKNGTGKTAAFCIPALEKI 182 (494)
Q Consensus 154 ~~~~~~~ii~~~TGsGKT~~~~~~~l~~l 182 (494)
+..+..++++|+||||||+. +..++..+
T Consensus 141 v~~~~~ili~G~tGsGKTTl-l~al~~~~ 168 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF-LKSLVDEI 168 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH-HHHHHccC
Confidence 33567899999999999996 23344433
No 488
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=90.98 E-value=0.8 Score=44.76 Aligned_cols=38 Identities=24% Similarity=0.478 Sum_probs=28.7
Q ss_pred cCCcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEcCc
Q 011079 156 TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPT 197 (494)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~ 197 (494)
.|+.++|.|.+|+|||+- .+-++..+...+ .+++|+++
T Consensus 9 ~G~TLLIKG~PGTGKTtf-aLelL~~l~~~~---~v~YISTR 46 (484)
T PF07088_consen 9 PGQTLLIKGEPGTGKTTF-ALELLNSLKDHG---NVMYISTR 46 (484)
T ss_pred CCcEEEEecCCCCCceee-ehhhHHHHhccC---CeEEEEec
Confidence 356799999999999985 555666666554 46888876
No 489
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.97 E-value=4.1 Score=38.93 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=18.0
Q ss_pred CcEEEEccCCCchhHHhHHHHHHhh
Q 011079 158 SDILARAKNGTGKTAAFCIPALEKI 182 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l 182 (494)
+-+++.||+|+|||.. +.++.+.+
T Consensus 178 RliLlhGPPGTGKTSL-CKaLaQkL 201 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSL-CKALAQKL 201 (423)
T ss_pred eEEEEeCCCCCChhHH-HHHHHHhh
Confidence 4478999999999974 45555555
No 490
>PRK09165 replicative DNA helicase; Provisional
Probab=90.95 E-value=1.2 Score=46.05 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=18.7
Q ss_pred CcEEEEccCCCchhHHhHHHHHHhh
Q 011079 158 SDILARAKNGTGKTAAFCIPALEKI 182 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l 182 (494)
.-++|.|.||.|||+..+-.+....
T Consensus 218 ~livIaarpg~GKT~~al~ia~~~a 242 (497)
T PRK09165 218 DLIILAGRPSMGKTALATNIAFNAA 242 (497)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHH
Confidence 3488999999999987665555443
No 491
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=90.89 E-value=0.54 Score=40.88 Aligned_cols=31 Identities=29% Similarity=0.378 Sum_probs=24.2
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHC
Q 011079 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFL 290 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~ 290 (494)
+.+.+++++||.-.-++......+..++..+
T Consensus 107 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~ 137 (166)
T cd03223 107 LHKPKFVFLDEATSALDEESEDRLYQLLKEL 137 (166)
T ss_pred HcCCCEEEEECCccccCHHHHHHHHHHHHHh
Confidence 5567899999999877777677777777665
No 492
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.88 E-value=2.7 Score=42.12 Aligned_cols=43 Identities=21% Similarity=0.283 Sum_probs=26.2
Q ss_pred CcEEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEE-cCcHHHH
Q 011079 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVIL-VPTRELA 201 (494)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil-~P~~~la 201 (494)
..+.|+|.+|+|||.+ +--++..+......+.++++ |-+...+
T Consensus 176 gSlYVsG~PGtgkt~~-l~rvl~~~~~~~~~~~~v~inc~sl~~~ 219 (529)
T KOG2227|consen 176 GSLYVSGQPGTGKTAL-LSRVLDSLSKSSKSPVTVYINCTSLTEA 219 (529)
T ss_pred cceEeeCCCCcchHHH-HHHHHHhhhhhcccceeEEEeeccccch
Confidence 4599999999999987 33355555544444333443 3333444
No 493
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=90.81 E-value=2.6 Score=40.86 Aligned_cols=41 Identities=15% Similarity=0.180 Sum_probs=24.6
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEEee
Q 011079 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSAT 302 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 302 (494)
....+++||||+|.|... -...+.+.+..-|+...+|+ .++
T Consensus 91 ~~~~kv~iI~~ad~m~~~-a~naLLK~LEepp~~t~~il-~~~ 131 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQ-AQNAFLKTIEEPPKGVFIIL-LCE 131 (313)
T ss_pred cCCceEEEEechhhcCHH-HHHHHHHHhcCCCCCeEEEE-EeC
Confidence 467899999999988432 23344445554444444444 444
No 494
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.76 E-value=2.8 Score=42.94 Aligned_cols=88 Identities=10% Similarity=0.205 Sum_probs=65.9
Q ss_pred cEEEEecChhHHHHHHHHHHHc----CCcEEEEccCCCHHHHHHHHHHhhcCCccEEEEcC-----ccc-ccCCCCCCCE
Q 011079 359 QSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD-----LFT-RGIDIQAVNV 428 (494)
Q Consensus 359 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~i~~~f~~g~~~vlvaT~-----~~~-~Gidi~~v~~ 428 (494)
.+||.+||++.+.++.+.+.+. ++.+.+++|+.+...+..-+++ ..+|+|||+ .++ -.+++..+.|
T Consensus 167 ~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~----gvdiviaTPGRl~d~le~g~~~l~~v~y 242 (519)
T KOG0331|consen 167 IVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLER----GVDVVIATPGRLIDLLEEGSLNLSRVTY 242 (519)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhc----CCcEEEeCChHHHHHHHcCCccccceeE
Confidence 5899999999999999888775 4568899999988776555442 468999997 233 3578889999
Q ss_pred EE--------EcCCCCCHHHHHHHhccccC
Q 011079 429 VI--------NFDFPKNSETYLHRVGRSGR 450 (494)
Q Consensus 429 VI--------~~~~p~s~~~~~Qr~GRagR 450 (494)
+| +.++-..+..++..++|.-|
T Consensus 243 lVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 243 LVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred EEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 88 34444456677777777666
No 495
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=90.68 E-value=1.6 Score=40.39 Aligned_cols=95 Identities=21% Similarity=0.235 Sum_probs=65.1
Q ss_pred CCcEEEEccCCCHHHHHHHHHHhhcCC----ccEEEEcCcccccCCCCCCCEEEEcCCCCCHHHHHHHhcccc-CCCCcc
Q 011079 381 GYSCFYIHAKMLQDHRNRVFHDFRNGA----CRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSG-RFGHLG 455 (494)
Q Consensus 381 ~~~~~~~~~~~~~~~r~~i~~~f~~g~----~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRag-R~g~~g 455 (494)
++.+..++|+.+... -.|.++. ..|+|.=+.++||++++++.+......+...+++.||.==-| |.|-..
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 688888887655433 2344443 778899999999999999999999999998888888753334 666556
Q ss_pred eEEEEecccc---hHHHHHHHHHhCCCC
Q 011079 456 LAVNLITYED---RFNLYRIEQELGTEI 480 (494)
Q Consensus 456 ~~~~l~~~~~---~~~~~~l~~~~~~~~ 480 (494)
.|=++.++.- ...+...++.++..+
T Consensus 185 l~Ri~~~~~l~~~f~~i~~~~e~lr~~i 212 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIAEAEEELREEI 212 (239)
T ss_pred ceEEecCHHHHHHHHHHHHHHHHHHHHH
Confidence 6766555432 233444455555444
No 496
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=90.62 E-value=0.5 Score=41.36 Aligned_cols=41 Identities=24% Similarity=0.246 Sum_probs=27.8
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEEEE
Q 011079 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 300 (494)
+.+.+++++||.-.-++......+..++..+......++++
T Consensus 112 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~ 152 (173)
T cd03246 112 YGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVI 152 (173)
T ss_pred hcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 56779999999998777776777777776654322334433
No 497
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=90.61 E-value=0.64 Score=42.91 Aligned_cols=40 Identities=20% Similarity=-0.025 Sum_probs=26.0
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHhhhcC---CCceEEEEEcC
Q 011079 157 GSDILARAKNGTGKTAAFCIPALEKIDQD---NNVIQVVILVP 196 (494)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~---~~~~~~lil~P 196 (494)
|.-+.+.|++|||||+.....+....... +.+..++++.-
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~ 61 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDT 61 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeC
Confidence 45589999999999987665554433221 11236788773
No 498
>PLN03130 ABC transporter C family member; Provisional
Probab=90.58 E-value=0.63 Score=55.35 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=26.1
Q ss_pred ccccceEEecccccccCCCcHHHHHHHHHHCCCCCcEEE
Q 011079 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILM 298 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~ 298 (494)
+++-+++|+|||-.-+|..-...+.+.++....++-+|.
T Consensus 1390 Lr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~ 1428 (1622)
T PLN03130 1390 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLI 1428 (1622)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 455678999999876666666667777766645544333
No 499
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=90.50 E-value=1.7 Score=37.81 Aligned_cols=53 Identities=13% Similarity=0.273 Sum_probs=32.5
Q ss_pred ccccceEEecccccccCCCc--HHHHHHHHHHCCCCCcEEEEEeecCcchHHHHH
Q 011079 260 LKDCSMLVMDEADKLLSPEF--QPSVEQLIRFLPANRQILMFSATFPVTVKDFKD 312 (494)
Q Consensus 260 l~~~~~iViDEah~~~~~~~--~~~~~~~~~~~~~~~~~i~~SATl~~~~~~~~~ 312 (494)
-..+++||+||+-..++.++ ...+..++...|...-+|++--.+|+.+.+.++
T Consensus 94 ~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 94 SGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp -TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-S
T ss_pred CCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCC
Confidence 35799999999987665554 456777788777777777766666766665543
No 500
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.47 E-value=2.8 Score=37.57 Aligned_cols=127 Identities=16% Similarity=0.203 Sum_probs=64.0
Q ss_pred EEEEccCCCchhHHhHHHHHHhhhcCCCceEEEEEc---CcHHHHHHHHHHHHHHhccC---CcEEEEE-ECCCChHHHH
Q 011079 160 ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV---PTRELALQTSQVCKELGKHL---NIQVMVT-TGGTSLKDDI 232 (494)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~---P~~~la~q~~~~~~~~~~~~---~~~~~~~-~g~~~~~~~~ 232 (494)
++|.|+.|+|||.-.+..+.-.+.... ++.+++ ++++...|....--.+...+ .+.+..+ ..+......
T Consensus 31 ~lIEGd~~tGKSvLsqr~~YG~L~~g~---~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~~~- 106 (235)
T COG2874 31 ILIEGDNGTGKSVLSQRFAYGFLMNGY---RVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWGRR- 106 (235)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhCCc---eEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccccChH-
Confidence 889999999999876666665555433 566666 66666555433111111000 0111110 001110000
Q ss_pred HHhcCCCeEEEEchHHHHHhHhcCCccccccceEEecccccccCCCcHHHHHH---HHHHCCCCCcEEEEEeec
Q 011079 233 MRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQ---LIRFLPANRQILMFSATF 303 (494)
Q Consensus 233 ~~~~~~~~Ilv~T~~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~---~~~~~~~~~~~i~~SATl 303 (494)
+-..+++.+-... ...+-++||+|=...+...+-...+.. .++.+...-++|++|+-.
T Consensus 107 ------------~~~~~L~~l~~~~-k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp 167 (235)
T COG2874 107 ------------SARKLLDLLLEFI-KRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHP 167 (235)
T ss_pred ------------HHHHHHHHHHhhH-HhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeCh
Confidence 1112333332221 256778999998886544331222222 244455567899999984
Done!