Query 011080
Match_columns 494
No_of_seqs 210 out of 1339
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 20:23:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011080.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011080hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wme_A BADH, betaine aldehyde 100.0 6E-109 2E-113 859.7 55.4 472 13-493 6-490 (490)
2 3prl_A NADP-dependent glyceral 100.0 1E-103 3E-108 824.7 57.7 476 12-489 10-486 (505)
3 3ed6_A Betaine aldehyde dehydr 100.0 1E-103 5E-108 825.5 57.2 469 13-489 32-513 (520)
4 3ifg_A Succinate-semialdehyde 100.0 1E-103 3E-108 821.6 54.7 465 13-485 12-483 (484)
5 3ek1_A Aldehyde dehydrogenase; 100.0 1E-103 4E-108 823.6 54.5 467 13-487 32-503 (504)
6 3rh9_A Succinate-semialdehyde 100.0 2E-103 8E-108 821.5 54.7 467 12-487 10-485 (506)
7 3iwj_A Putative aminoaldehyde 100.0 1E-102 5E-107 817.3 59.4 474 10-488 4-491 (503)
8 3k2w_A Betaine-aldehyde dehydr 100.0 6E-103 2E-107 818.7 55.1 468 12-487 11-489 (497)
9 3u4j_A NAD-dependent aldehyde 100.0 2E-102 5E-107 819.2 57.8 468 13-488 22-500 (528)
10 4f3x_A Putative aldehyde dehyd 100.0 8E-103 3E-107 816.6 55.3 465 12-486 24-497 (498)
11 3pqa_A Lactaldehyde dehydrogen 100.0 2E-102 5E-107 812.2 55.8 460 16-489 2-467 (486)
12 2o2p_A Formyltetrahydrofolate 100.0 2E-102 6E-107 816.7 54.9 468 14-486 37-517 (517)
13 1a4s_A ALDH, betaine aldehyde 100.0 4E-102 1E-106 813.0 55.7 469 12-490 18-500 (503)
14 4e4g_A Methylmalonate-semialde 100.0 6E-102 2E-106 813.6 54.7 469 13-489 26-508 (521)
15 3r31_A BADH, betaine aldehyde 100.0 3E-102 1E-106 815.0 52.1 464 12-488 13-490 (517)
16 3jz4_A Succinate-semialdehyde 100.0 2E-101 7E-106 805.8 57.9 465 13-485 9-480 (481)
17 4dng_A Uncharacterized aldehyd 100.0 8E-102 3E-106 810.0 55.0 477 11-493 4-485 (485)
18 2d4e_A 5-carboxymethyl-2-hydro 100.0 2E-101 7E-106 809.8 57.5 468 13-489 26-508 (515)
19 3i44_A Aldehyde dehydrogenase; 100.0 1E-101 4E-106 807.5 54.8 459 13-483 25-495 (497)
20 1bxs_A Aldehyde dehydrogenase; 100.0 3E-101 9E-106 805.9 56.5 466 13-487 20-497 (501)
21 2imp_A Lactaldehyde dehydrogen 100.0 2E-101 7E-106 805.1 55.5 466 12-485 5-478 (479)
22 3r64_A NAD dependent benzaldeh 100.0 3E-101 1E-105 808.0 56.5 473 10-489 9-488 (508)
23 3b4w_A Aldehyde dehydrogenase; 100.0 1E-101 4E-106 808.1 52.5 465 13-488 8-484 (495)
24 2ve5_A BADH, betaine aldehyde 100.0 4E-101 1E-105 805.8 56.3 471 12-491 5-488 (490)
25 1wnd_A Putative betaine aldehy 100.0 6E-101 2E-105 801.9 55.7 463 13-485 23-494 (495)
26 1o04_A Aldehyde dehydrogenase, 100.0 2E-101 7E-106 806.2 52.2 465 14-487 20-496 (500)
27 3qan_A 1-pyrroline-5-carboxyla 100.0 7E-101 2E-105 808.4 56.2 466 13-488 37-518 (538)
28 1euh_A NADP dependent non phos 100.0 1E-100 4E-105 798.5 55.7 463 13-486 4-474 (475)
29 1uxt_A Glyceraldehyde-3-phosph 100.0 1E-100 4E-105 801.6 51.4 469 13-487 18-493 (501)
30 2w8n_A Succinate-semialdehyde 100.0 3E-100 1E-104 796.2 52.6 463 14-486 13-486 (487)
31 1t90_A MMSDH, probable methylm 100.0 1.2E-99 4E-104 792.6 55.7 469 13-490 5-484 (486)
32 2j6l_A Aldehyde dehydrogenase 100.0 1.1E-99 4E-104 794.9 54.3 465 12-486 22-499 (500)
33 1uzb_A 1-pyrroline-5-carboxyla 100.0 3E-99 1E-103 794.4 56.5 465 13-486 37-516 (516)
34 3ros_A NAD-dependent aldehyde 100.0 1.1E-99 4E-104 790.4 52.2 448 30-487 5-459 (484)
35 3ty7_A Putative aldehyde dehyd 100.0 6E-100 2E-104 794.7 48.3 457 13-483 7-474 (478)
36 3etf_A Putative succinate-semi 100.0 8.2E-97 3E-101 768.4 54.6 448 28-485 6-460 (462)
37 4e3x_A Delta-1-pyrroline-5-car 100.0 2E-96 7E-101 775.8 53.6 465 12-486 62-551 (563)
38 3ju8_A Succinylglutamic semial 100.0 1.1E-95 4E-100 763.4 55.0 457 13-486 5-471 (490)
39 4h7n_A Aldehyde dehydrogenase; 100.0 9.9E-96 3E-100 761.4 52.2 457 26-492 3-469 (474)
40 4f9i_A Proline dehydrogenase/d 100.0 4.9E-94 1.7E-98 796.4 55.3 466 12-487 530-1011(1026)
41 2y53_A Aldehyde dehydrogenase 100.0 1.4E-94 4.6E-99 762.8 47.0 466 14-485 8-518 (534)
42 3lns_A Benzaldehyde dehydrogen 100.0 3E-92 1E-96 732.0 50.8 442 29-484 6-455 (457)
43 3v4c_A Aldehyde dehydrogenase 100.0 2.1E-91 7.1E-96 737.6 45.7 470 4-489 20-520 (528)
44 3sza_A Aldehyde dehydrogenase, 100.0 3.4E-90 1.2E-94 716.9 49.6 427 47-486 14-448 (469)
45 1ez0_A ALDH, aldehyde dehydrog 100.0 4.1E-88 1.4E-92 709.6 46.4 447 25-483 3-480 (510)
46 3haz_A Proline dehydrogenase; 100.0 4.1E-86 1.4E-90 731.5 51.0 433 45-487 544-988 (1001)
47 2h5g_A Delta 1-pyrroline-5-car 100.0 2.3E-81 7.9E-86 649.1 29.8 405 32-487 10-436 (463)
48 1vlu_A Gamma-glutamyl phosphat 100.0 5.9E-79 2E-83 631.9 27.9 401 52-488 15-442 (468)
49 3k9d_A LMO1179 protein, aldehy 100.0 8.9E-78 3.1E-82 624.6 29.6 418 44-487 5-450 (464)
50 4ghk_A Gamma-glutamyl phosphat 100.0 1.2E-76 4.1E-81 612.3 30.2 391 50-487 25-440 (444)
51 1o20_A Gamma-glutamyl phosphat 100.0 1.8E-76 6.3E-81 608.1 30.8 389 50-487 13-423 (427)
52 3my7_A Alcohol dehydrogenase/a 100.0 1.2E-74 4.1E-79 599.2 28.8 413 45-484 1-447 (452)
53 4gic_A HDH, histidinol dehydro 97.6 0.056 1.9E-06 53.4 27.1 254 147-482 120-399 (423)
54 1kae_A HDH, histidinol dehydro 97.2 0.21 7.2E-06 49.5 25.3 324 74-482 31-392 (434)
55 2fiu_A Conserved hypothetical 46.9 49 0.0017 25.4 6.3 23 393-415 54-76 (99)
56 3v42_A Folliculin; tumor suppr 44.1 26 0.0009 31.5 4.9 63 174-244 21-83 (226)
57 2zfz_A Arginine repressor; DNA 39.8 47 0.0016 24.3 4.9 36 183-222 20-55 (79)
58 1b4b_A Arginine repressor; cor 38.4 43 0.0015 24.0 4.4 36 183-222 12-47 (71)
59 2p5m_A Arginine repressor; alp 35.6 43 0.0015 24.8 4.2 36 183-222 24-59 (83)
60 1xxa_A ARGR, arginine represso 34.5 37 0.0013 24.9 3.6 37 183-222 14-50 (78)
61 3fgh_A Transcription factor A, 33.5 89 0.003 21.6 5.5 36 59-94 29-64 (67)
62 3lo3_A Uncharacterized conserv 30.6 1.2E+02 0.0041 22.8 6.1 23 393-415 53-75 (94)
63 3v4g_A Arginine repressor; vib 30.1 36 0.0012 29.5 3.3 39 181-222 114-152 (180)
64 2yvq_A Carbamoyl-phosphate syn 26.2 76 0.0026 26.1 4.6 60 203-263 60-132 (143)
65 2eqz_A High mobility group pro 25.9 1.2E+02 0.0043 22.1 5.4 37 58-94 47-83 (86)
66 1s7i_A Hypothetical protein PA 24.5 2.6E+02 0.0091 22.1 7.9 70 342-416 31-108 (124)
67 1b4a_A Arginine repressor; hel 23.8 84 0.0029 26.2 4.4 36 183-222 90-125 (149)
68 3iwt_A 178AA long hypothetical 22.7 98 0.0033 26.3 4.8 49 196-244 39-90 (178)
69 1v63_A Nucleolar transcription 22.5 1.6E+02 0.0054 22.4 5.6 38 59-96 37-74 (101)
70 3pzy_A MOG; ssgcid, seattle st 22.3 93 0.0032 26.2 4.5 46 198-244 28-75 (164)
71 2xw6_A MGS, methylglyoxal synt 22.2 34 0.0012 28.1 1.6 66 169-244 16-83 (134)
72 3lap_A Arginine repressor; arg 21.6 1.2E+02 0.004 25.9 4.9 39 180-222 108-146 (170)
73 1hry_A Human SRY; DNA, DNA-bin 21.0 1.3E+02 0.0043 21.3 4.5 30 60-89 36-65 (76)
74 2co9_A Thymus high mobility gr 20.2 2.1E+02 0.0073 21.6 5.9 36 60-95 49-84 (102)
No 1
>2wme_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wox_A* 3zqa_A* 2xdr_A*
Probab=100.00 E-value=5.6e-109 Score=859.67 Aligned_cols=472 Identities=32% Similarity=0.523 Sum_probs=444.1
Q ss_pred cccceeCCeeeeCCCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHHH
Q 011080 13 VYKFFYDGVWRKSSSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKAP 92 (494)
Q Consensus 13 ~~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~ 92 (494)
..++||||+|+.+.++.+++++||+||+++++++.++.+|+++|+++|++||+.|+.+|..+|.++|+++++.|++++++
T Consensus 6 ~~kl~I~G~~~~~~~~~~~~v~nP~tg~~i~~v~~a~~~dv~~Av~aA~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~e 85 (490)
T 2wme_A 6 EQKLYIGGRYVEASSGATFETINPANGEVLAKVQRASREDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDE 85 (490)
T ss_dssp CBCEECSSSEECCSSSCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCcEEECCeeeCCCCCCEEEeeCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHH
Confidence 45789999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCChHHHHH-HHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchHH
Q 011080 93 IAECLVKEIAKPAKDAVT-EVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVN 171 (494)
Q Consensus 93 l~~~~~~e~Gk~~~~a~~-ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~~ 171 (494)
|++++++|+|||+.+++. |+..+++.++|++..++++.+...+. ..+...+++++|+|||++|+|||||+.
T Consensus 86 la~~~~~e~Gk~~~ea~~~~v~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~~~~P~GVv~~I~PwNfP~~ 157 (490)
T 2wme_A 86 LAALETLDTGKPLAETRSVDIVTGADVLEYYAGLVPAIEGEQIPL--------RETSFVYTRREPLGVVAGIGAWNYPVQ 157 (490)
T ss_dssp HHHHHHHHHCCCHHHHTTTHHHHHHHHHHHHHHHGGGCCEEEEEE--------ETTEEEEEEEEECSEEEEECCSSSHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhccccccCccccc--------cCCcceeEEecceeEEEEeccccCcch
Confidence 999999999999999986 69999999999999887766554321 124677899999999999999999999
Q ss_pred HHHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHHH
Q 011080 172 LAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGISI 250 (494)
Q Consensus 172 ~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~v 250 (494)
+.++++++||++||+||+|||+.+|+++.+|++++.++|+|+|++|+|+|++.++++.|+.||+|+.|+|||| .+|+.+
T Consensus 158 ~~~~~~a~ALaaGNtVVlKPse~tp~ta~~l~~l~~eaGlP~gv~~vv~g~g~~~g~~L~~~p~v~~I~FTGS~~~G~~i 237 (490)
T 2wme_A 158 IALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYTEAGVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKV 237 (490)
T ss_dssp HHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHHTCCTTSEEECCSCTTTHHHHHHHCTTCCEEEEESCHHHHHHH
T ss_pred hhhhhHHHHHHcCCeEEEECCcCCHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHhCCCCCEEEEECChHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988899999999999999999999 999887
Q ss_pred HHHc---CCCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccccCC
Q 011080 251 SKKA---GMIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTVGA 327 (494)
Q Consensus 251 ~~~a---~~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~g~ 327 (494)
.+.+ ++||+++|||||||+||++|||++.|++.+++++|.|+||.|++++|||||++++|+|+++|+++++++++||
T Consensus 238 ~~~~a~~~lk~v~lELGGk~p~iV~~dAdl~~A~~~~~~~~~~n~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~l~vGd 317 (490)
T 2wme_A 238 MASASSSSLKEVTMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQARFEAKVLERVQRIRLGD 317 (490)
T ss_dssp HHHHHHHHCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCCCEEEEEGGGHHHHHHHHHHHHHTCCBSC
T ss_pred HHhhhccCCceEEEEcCCcCeEEEccCccHHHHHHHHHHHHhccCCCcCCCceeeccchhHHHHHHHHHHHHHHhCcCCC
Confidence 6533 4899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCCCCccCCHHHHHHHHHHHHHHHHcCCEEeeccc-------CCCceeecEEEeeCCCCCCCcccccccceeeeEe
Q 011080 328 P-EDDCDITPVVTESSANFIEGLVMDAKQKAATFCQEYK-------REGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIR 399 (494)
Q Consensus 328 p-~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~~~~~-------~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~ 399 (494)
| ++++++||++++.+++++.++|++++++|+++..|+. .+|+|++|||+.+++++|++++||+||||++|++
T Consensus 318 p~~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~~~~G~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~ 397 (490)
T 2wme_A 318 PQDENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILV 397 (490)
T ss_dssp TTSTTCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCCTTTGGGTTCBCCEEEESCCTTSHHHHSCCCSSEEEEEE
T ss_pred CccccCccCCcCCHHHHHHHHHHHHHHHhcCCEEEECCcccCcccccCCCccCCEEEEcCCCCChhhhccccCCEEEEEE
Confidence 9 8899999999999999999999999999999954332 3689999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCCCcchHHHHHHhhce
Q 011080 400 INSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKI 479 (494)
Q Consensus 400 ~~~~~eai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~ 479 (494)
|+|+||||+++|+++|||+++|||+|.++++++++++++|+|+||++.... ..+||||+|+||+|+++|.+|+++||+.
T Consensus 398 ~~~~deAi~~aN~~~yGL~a~v~t~d~~~a~~~~~~l~aG~v~iN~~~~~~-~~~PFGG~k~SG~Gre~G~~gl~~ft~~ 476 (490)
T 2wme_A 398 YDDEDEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWINTWGESP-AEMPVGGYKQSGVGRENGLTTLAHYTRI 476 (490)
T ss_dssp ESCHHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCCSEEEESCCSCCC-TTSCBCCSGGGEESCBSHHHHHHTTEEE
T ss_pred eCCHHHHHHHHhcCCCCCeEEEEcCCHHHHHHHHHHCCeeEEEEeCCCCCC-CCCCcccccccccCchhHHHHHHHhhce
Confidence 999999999999999999999999999999999999999999999876544 4599999999999999999999999999
Q ss_pred eEEEEecCCCCCCC
Q 011080 480 KSTVINLPTPSYTV 493 (494)
Q Consensus 480 k~i~~~~~~~~~~~ 493 (494)
|+|+++++...++|
T Consensus 477 K~v~i~~g~~~s~F 490 (490)
T 2wme_A 477 KSVQVELGDYASVF 490 (490)
T ss_dssp EEEEEECSCCCCCC
T ss_pred eEEEEECCCCCCCC
Confidence 99999998877665
No 2
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural genomics, protein structure initiative, dehydroge PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Probab=100.00 E-value=1e-103 Score=824.72 Aligned_cols=476 Identities=51% Similarity=0.825 Sum_probs=444.8
Q ss_pred CcccceeCCeeeeCCCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHH
Q 011080 12 GVYKFFYDGVWRKSSSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKA 91 (494)
Q Consensus 12 ~~~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ 91 (494)
...++||||+|+.+.++..++++||+||+++++++.++.+|+++++++|++||+.|+.++..+|.++|+++++.|+++++
T Consensus 10 ~~~~~~I~G~~~~~~~~~~~~v~nP~tg~~i~~~~~~~~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ 89 (505)
T 3prl_A 10 FNANILRNGEWVESRTGERISISAPASGVALGSIPALSQEEVNDAIQGAKDAQKIWKIRPIHERVDLLYAWADLLEERKE 89 (505)
T ss_dssp EECCEEETTEEECCTTCCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHH
T ss_pred cccCeeECCEEecCCCCCEEEEECCCCCCEEEEEcCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999987777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchHH
Q 011080 92 PIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVN 171 (494)
Q Consensus 92 ~l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~~ 171 (494)
+|++++++|+|||..+++.|+..+++.++++++.+.++.+..... ...+....+...++.++|+|||++|+|||||+.
T Consensus 90 ela~~~~~e~Gk~~~ea~~Ev~~~~~~~~~~a~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~ 167 (505)
T 3prl_A 90 IIGELIMHEVAKPKKSAIGEVSRTADIIRHTADEALRLNGETLKG--DQFKGGSSKKIALVEREPLGVVLAISPFNYPVN 167 (505)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEG--GGSTTTCSSEEEEEEEEECSEEEEEECSSSTTH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc--cccccccCCceeEEEEcCCcEEEEECCCccHHH
Confidence 999999999999999999999999999999999888776543221 111111113567889999999999999999999
Q ss_pred HHHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHHH
Q 011080 172 LAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGISI 250 (494)
Q Consensus 172 ~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~v 250 (494)
+.++++++||++||+||+|||+.+|+++..|++++.++|+|+|++|+++|++.++++.|+.||+||.|+|||| .+|+.+
T Consensus 168 ~~~~~~a~ALaaGN~VVlKpse~tp~ta~~l~~ll~eaGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~i 247 (505)
T 3prl_A 168 LAAAKIAPALVTGNTVVFKPATQGSLSGIKMVEALADAGAPEGIIQVVTGRGSVIGDHLVEHPGIDMITFTGGTTTGERI 247 (505)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSTTHHHHHHHHHHHHHTTCCTTSEEECCCCHHHHHHHHHTCTTCCEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHhCcCcCeEEEEeCCCHHHHHHHHhCCCCCEEEEeCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988889999999999999999999 999999
Q ss_pred HHHcCCCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccccCCCCC
Q 011080 251 SKKAGMIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTVGAPED 330 (494)
Q Consensus 251 ~~~a~~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~g~p~~ 330 (494)
.+.++++|+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||++++|+|+++|+++++++++|||.+
T Consensus 248 ~~~aal~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~g~p~~ 327 (505)
T 3prl_A 248 SEKAKMIPVVLELGGKDPAIVLDDADLKLTASQIVSGAFSYSGQRCTAIKRVFVQDSVADQLVANIKELVEQLTVGSPED 327 (505)
T ss_dssp HHHCCSSCEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCCSSSEEEEEEEHHHHHHHHHHHHHHHHHCCBSCTTT
T ss_pred HHHccCCcEEEECCCCCCCccCCCCCHHHHHHHHHHHHHhcCCCccccCceEEEeHHHHHHHHHHHHHHHHhcccCCCCC
Confidence 99888999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHcCCEEeecccCCCceeecEEEeeCCCCCCCcccccccceeeeEecCCHHHHHHHH
Q 011080 331 DCDITPVVTESSANFIEGLVMDAKQKAATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHC 410 (494)
Q Consensus 331 ~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~~~~~~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~~~eai~~~ 410 (494)
++++||++++.+++++.+++++++++|+++..|+...|+|++|||+.+++++|++++||+||||++|++|+|+||||+++
T Consensus 328 ~~~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~V~~~~~~deAi~~a 407 (505)
T 3prl_A 328 DADITPVIDEKSAAFIQGLIDDALENGATLLSGNKRQGNLLSPTLLDDVTPAMRVAWEEPFGPVLPIIRVKDANEAISLS 407 (505)
T ss_dssp TCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCEETTEECCEEEESCCTTSGGGTSCCCSSEEEEEEESSHHHHHHHH
T ss_pred cCcCCcccCHHHHHHHHHHHHHHHHCCCEEEecCCCCCceeCCeEeecCCCCChhhcCCccCcEEEEEEeCCHHHHHHHH
Confidence 88999999999999999999999999999976655679999999999999999999999999999999999999999999
Q ss_pred hcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCCCcchHHHHHHhhceeEEEEecCCC
Q 011080 411 NASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVINLPTP 489 (494)
Q Consensus 411 n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~k~i~~~~~~~ 489 (494)
|+++|||+++|||+|.++++++++++++|+|+||+++......+||||+|+||+|+++|.+|+++|++.|+|+++++.+
T Consensus 408 N~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~~PFGG~k~SG~Gr~~g~~~~~~f~~~k~v~~~~~~~ 486 (505)
T 3prl_A 408 NQSDYGLQASIFTKDTDRAINIGKHLEVGTVHINAKTERGPDHFPFLGVKKSGLGVQGIKPSLLSMTRERVTVLNLAEN 486 (505)
T ss_dssp HTSSEESEEEEECSCHHHHHHHHHTSCSSEEEESSCCCSCSTTSCBCCEETTEESCBSHHHHHHHTEEEEEEEEEC---
T ss_pred hCCCCCeEEEEEcCCHHHHHHHHHHCCeeEEEEcCCCCCCCCCCCcCCcCcCCCCcCccHHHHHHhhceEEEEEeCCCc
Confidence 9999999999999999999999999999999999987644566999999999999999999999999999999987543
No 3
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti deseases, NAD, oxidoreductase, PSI; 1.70A {Staphylococcus aureus} PDB: 3fg0_A*
Probab=100.00 E-value=1.5e-103 Score=825.46 Aligned_cols=469 Identities=31% Similarity=0.487 Sum_probs=442.5
Q ss_pred cccceeCCeeeeCCCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHh--HHhcCCCHHHHHHHHHHHHHHHHHcH
Q 011080 13 VYKFFYDGVWRKSSSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQ--KSWAKTPLWKRAELLHKAAAILKEQK 90 (494)
Q Consensus 13 ~~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~--~~w~~~~~~~R~~~L~~~a~~l~~~~ 90 (494)
.+++||||+|+.+.++..++++||+||+++++++.++.+|+++|+++|++|| +.|+.++..+|.++|+++++.|++++
T Consensus 32 ~~~~~I~G~~~~~~~~~~~~v~nP~tg~~i~~v~~~~~~dv~~Av~aA~~A~~~~~w~~~~~~~R~~~L~~~a~~l~~~~ 111 (520)
T 3ed6_A 32 SQRQYIDGEWVESANKNTRDIINPYNQEVIFTVSEGTKEDAERAILAARRAFESGEWSQETAETRGKKVRAIADKIKEHR 111 (520)
T ss_dssp CCSEEETTEEECCTTCCEEEEEETTTTEEEEEEECCCHHHHHHHHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHHHHHTH
T ss_pred CCceEECCEEecCCCCCEEEeECCCCCCEEEEEcCCCHHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHHHHHHhH
Confidence 5678999999987778899999999999999999999999999999999999 88999999999999999999999999
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchH
Q 011080 91 APIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPV 170 (494)
Q Consensus 91 ~~l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~ 170 (494)
++|++++++|+|||+.+++.|+..+++.+++++..++++.+.... ....+...++.++|+|||++|+|||||+
T Consensus 112 ~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~~~~~~g~~~~-------~~~~~~~~~~~~~P~GVV~~I~PwN~P~ 184 (520)
T 3ed6_A 112 EALARLETLDTGKTLEESYADMDDIHNVFMYFAGLADKDGGEMID-------SPIPDTESKIVKEPVGVVTQITPWNYPL 184 (520)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEC-------CSSTTEEEEEEEEECCEEEEECCSSSHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCeecc-------cCCCCCcccccccCccEEEEECCCccHH
Confidence 999999999999999999999999999999999988776554221 1112467889999999999999999999
Q ss_pred HHHHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHH
Q 011080 171 NLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGIS 249 (494)
Q Consensus 171 ~~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~ 249 (494)
.+.++++++||++||+||+|||+.+|+++.+|++++.++|+|+|++|+|+|++.++++.|+.||+|+.|+|||| .+|+.
T Consensus 185 ~~~~~~~apALaaGNtVVlKPs~~tp~t~~~l~~l~~eaGlP~gvvnvv~g~~~~~g~~L~~~p~vd~V~FTGS~~vG~~ 264 (520)
T 3ed6_A 185 LQASWKIAPALATGCSLVMKPSEITPLTTIRVFELMEEVGFPKGTINLILGAGSEVGDVMSGHKEVDLVSFTGGIETGKH 264 (520)
T ss_dssp HHHHHHHHHHHHHTCEEEEECCTTCCHHHHHHHHHHHHHCCCTTSEEECCSCCTTHHHHHHHCTTCSEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEEcCCcchHHHHHHHHHHHHhCCCCCeEEEEeCCChHHHHHHHhCCCcCEEEEECCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999 99999
Q ss_pred HHHHc--CCCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccccCC
Q 011080 250 ISKKA--GMIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTVGA 327 (494)
Q Consensus 250 v~~~a--~~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~g~ 327 (494)
|.+.+ .++|+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||+++||+|+++|+++++++++||
T Consensus 265 i~~~aa~~l~~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~l~vG~ 344 (520)
T 3ed6_A 265 IMKNAANNVTNIALELGGKNPNIIFDDADFELAVDQALNGGYFHAGQVCSAGSRILVQNSIKDKFEQALIDRVKKIKLGN 344 (520)
T ss_dssp HHHHHHTTTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGTSTTCCCEEEEEHHHHHHHHHHHHHHHTTCCBCC
T ss_pred HHHHhhhcCCCEEEEcCCCCeeEECCCCCHHHHHHHHHHHHHhcCCCCcccCceEEEcHHHHHHHHHHHHHHHHhccCCC
Confidence 99876 4799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCCCCccCCHHHHHHHHHHHHHHHHcCCEEe-eccc------CCCceeecEEEeeCCCCCCCcccccccceeeeEe
Q 011080 328 P-EDDCDITPVVTESSANFIEGLVMDAKQKAATFC-QEYK------REGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIR 399 (494)
Q Consensus 328 p-~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~-~~~~------~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~ 399 (494)
| ++++++||++++.+++++.++|++++++|+++. +|.. ..|+|++|||+.+++++|++++||+||||++|++
T Consensus 345 p~d~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~~~g~f~~PTvl~~v~~~~~i~~eEiFGPVl~v~~ 424 (520)
T 3ed6_A 345 GFDADTEMGPVISTEHRNKIESYMDVAKAEGATIAVGGKRPDRDDLKDGLFFEPTVITNCDTSMRIVQEEVFGPVVTVEG 424 (520)
T ss_dssp TTSTTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSCCCCGGGTTTTCCCCEEEESCCTTSHHHHSCCCSSEEEEEE
T ss_pred CccCCCcccccCCHHHHHHHHHHHHHHHhCCCEEEeCCCcCccccCCCCceECCeEEecCCCCCccccCceeCcEEEEEE
Confidence 9 889999999999999999999999999999995 4432 3689999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCCCcchHHHHHHhhce
Q 011080 400 INSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKI 479 (494)
Q Consensus 400 ~~~~~eai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~ 479 (494)
|+|+||||+++|+++|||+++|||+|.+++.++++++++|+|+||+++... ..+||||+|+||+|+++|.+|+++||+.
T Consensus 425 ~~~~deAi~~aN~~~~GL~a~v~t~d~~~a~~~a~~l~aG~V~iN~~~~~~-~~~PfGG~k~SG~Gre~G~~gl~~~t~~ 503 (520)
T 3ed6_A 425 FETEQEAIQLANDSIYGLAGAVFSKDIGKAQRVANKLKLGTVWINDFHPYF-AQAPWGGYKQSGIGRELGKEGLEEYLVS 503 (520)
T ss_dssp ESSHHHHHHHHTCSSCCSEEEEECSCHHHHHHHHHHSCCSEEEESCSCCCC-TTSCBCCSGGGEESCBSHHHHHHTTEEE
T ss_pred eCCHHHHHHHHhCCCCCcEEEEECCCHHHHHHHHHHCCcceEEECCCCCCC-CCCCcCCcCcCcCCccchHHHHHHhhce
Confidence 999999999999999999999999999999999999999999999987764 4599999999999999999999999999
Q ss_pred eEEEEecCCC
Q 011080 480 KSTVINLPTP 489 (494)
Q Consensus 480 k~i~~~~~~~ 489 (494)
|+|+++++.+
T Consensus 504 k~v~~~~~~~ 513 (520)
T 3ed6_A 504 KHILTNTNPQ 513 (520)
T ss_dssp EEEEEESSCC
T ss_pred EEEEEcCCCC
Confidence 9999987654
No 4
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious disease, ssgcid, seattle structural genomi for infectious disease; 2.70A {Burkholderia pseudomallei} PDB: 3ifh_Q
Probab=100.00 E-value=9.6e-104 Score=821.63 Aligned_cols=465 Identities=31% Similarity=0.516 Sum_probs=437.6
Q ss_pred cccceeCCeeeeCCCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHHH
Q 011080 13 VYKFFYDGVWRKSSSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKAP 92 (494)
Q Consensus 13 ~~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~ 92 (494)
..++||||+|+.+.++..++++||+||+++++++.++.+|+++|+++|++||+.|+.++..+|.++|+++++.|++++++
T Consensus 12 ~~~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~e 91 (484)
T 3ifg_A 12 RHQAYIGGEWQAADSDATFEVFDPATGESLGTVPKMGAAETARAIEAAQAAWAGWRMKTAKERAAILRRWFDLVIANSDD 91 (484)
T ss_dssp CCSEEETTEEECCTTCCEEEEECTTTCCEEEEEECBCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHH
T ss_pred ccceeECCEEeeCCCCCEEEeECCCCCCEEEEEcCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999877788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchHHH
Q 011080 93 IAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNL 172 (494)
Q Consensus 93 l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~~~ 172 (494)
|++++++|+|||+.+++.|+..+++.+++++..+.+..+... +....+...++.++|+|||++|+|||||+.+
T Consensus 92 la~~~~~e~Gk~~~~a~~ev~~~~~~l~~~a~~~~~~~g~~~-------~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~ 164 (484)
T 3ifg_A 92 LALILTTEQGKPLAEAKGEIAYAASFIEWFAEEGKRVAGDTL-------PTPDANKRIVVVKEPIGVCAAITPWNFPAAM 164 (484)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHTTCCEEEE-------CCSSTTEEEEEEEEECSSEEEECCSSSTTHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCccc-------cccCCCceeEEEecCCcEEEEECCCcChHHH
Confidence 999999999999999999999999999999987766544321 1112246788999999999999999999999
Q ss_pred HHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHHHH
Q 011080 173 AVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGISIS 251 (494)
Q Consensus 173 ~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~v~ 251 (494)
.++++++||++||+||+|||+.+|+++..|++++.++|+|+|++|+++|++.++++.|++||+|+.|+|||| .+|+.+.
T Consensus 165 ~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gv~~vv~g~~~~~g~~L~~~p~v~~v~FTGS~~~G~~i~ 244 (484)
T 3ifg_A 165 IARKVGPALAAGCPIVVKPAESTPFSALAMAFLAERAGVPKGVLSVVIGDPKAIGTEITSNPIVRKLSFTGSTAVGRLLM 244 (484)
T ss_dssp HHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHHTCCTTSEEECCBCHHHHHHHHHHCTTCCEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHhCCCcccEEEEeCCCHHHHHHHHhCCCcCEEEEECCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988889999999999999999999 9999999
Q ss_pred HHc--CCCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccccCCC-
Q 011080 252 KKA--GMIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTVGAP- 328 (494)
Q Consensus 252 ~~a--~~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~g~p- 328 (494)
+.+ .+||+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||+++||+|+++|+++++++++|||
T Consensus 245 ~~aa~~~k~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~ 324 (484)
T 3ifg_A 245 AQSAPTVKKLTLELGGNAPFIVFDDADLDAAVEGAIASKYRNNGQTCVCTNRFFVHERVYDAFADKLAAAVSKLKVGRGT 324 (484)
T ss_dssp HHTGGGTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCCCEEEEEGGGHHHHHHHHHHHHHTCCBSCTT
T ss_pred HHhhccCCceEEecCCCCeEEECCCCCHHHHHHHHHHHHHhcCCCcccCCCeEEEcHHHHHHHHHHHHHHHHhccCCCCC
Confidence 887 47999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHHHHHcCCEEeeccc---CCCceeecEEEeeCCCCCCCcccccccceeeeEecCCHHH
Q 011080 329 EDDCDITPVVTESSANFIEGLVMDAKQKAATFCQEYK---REGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEE 405 (494)
Q Consensus 329 ~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~~~~~---~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~~~e 405 (494)
++++++||++++.+++++.++|++++++|+++..++. .+|+|++|||+.+++++|++++||+||||++|++|+|+||
T Consensus 325 ~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~de 404 (484)
T 3ifg_A 325 ESGATLGPLINEAAVKKVESHIADALAKGASLMTGGKRHALGHGFFEPTVLTGVKPDMDVAKEETFGPLAPLFRFASEEE 404 (484)
T ss_dssp STTCCBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCSBCTTCTTCBCCEEEEEECTTSGGGTSCCCSSEEEEEEECCHHH
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEECCCccCCCCceEcCEEEecCCCCChhhCCeeeCcEEEEEEeCCHHH
Confidence 8899999999999999999999999999999954432 2699999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCCCcchHHHHHHhhceeEEEEe
Q 011080 406 GIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVIN 485 (494)
Q Consensus 406 ai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~k~i~~~ 485 (494)
||+++|+++|||+++|||+|.++++++++++++|+|+||+.... ...+||||+|+||+|+++|.+|+++|++.|+|++.
T Consensus 405 Ai~~aN~~~~GL~a~v~t~d~~~a~~~~~~l~aG~v~iN~~~~~-~~~~PfGG~k~SG~Gr~~g~~gl~~~~~~k~v~~~ 483 (484)
T 3ifg_A 405 LVRLANDTEFGLAAYLYSRDIGRVWRVAEALEYGMVGINTGLIS-NEVAPFGGVKQSGLGREGSHYGIDDYVVIKYLCVA 483 (484)
T ss_dssp HHHHHHCSSEESEEEEECCBHHHHHHHHHHCCCSEEEESCSCCC-CSSSCBCCEETTEECCBSTTTTTGGGEEEEEEEEE
T ss_pred HHHHHhCCCCCceEEEECCCHHHHHHHHHhCCcceEEEcCCCCC-CCCCCcCCcCcCcCCCCchHHHHHHhhceEEEEEe
Confidence 99999999999999999999999999999999999999986544 35599999999999999999999999999999874
No 5
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural genomics; HET: MES; 2.10A {Brucella melitensis biovar ABORTUS2308}
Probab=100.00 E-value=1.1e-103 Score=823.56 Aligned_cols=467 Identities=29% Similarity=0.473 Sum_probs=439.5
Q ss_pred cccceeCCeeeeCCCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHHH
Q 011080 13 VYKFFYDGVWRKSSSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKAP 92 (494)
Q Consensus 13 ~~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~ 92 (494)
..++||||+|+.+.++..++++||+||+++++++.++.+|+++|+++|++||+.|+.++..+|.++|+++++.|++++++
T Consensus 32 ~~~~~I~G~~~~~~~~~~~~v~nP~tg~~i~~v~~~~~~dv~~Av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~e 111 (504)
T 3ek1_A 32 KSQCLVNGRWIDAADGTTIKVTNPADGSVIGTVPSLSVATIKEAIDASAKALSGWAAKTAKERAGILRKWFDLIIANADD 111 (504)
T ss_dssp CSSEEETTEEECCTTCCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHH
T ss_pred ccCeEECCEEeeCCCCCEEEEECCCCCCEEEEEcCCCHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999877788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchHHH
Q 011080 93 IAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNL 172 (494)
Q Consensus 93 l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~~~ 172 (494)
|++++++|+|||+.+++.|+..+++.+++++....+..+... +....+...++.++|+|||++|+|||||+.+
T Consensus 112 la~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~~~~~~g~~~-------~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~ 184 (504)
T 3ek1_A 112 IALIMTSEQGKPLAEARGEVLYAASFIEWFAEEAKRVYGDTI-------PAPQNGQRLTVIRQPVGVTAAITPWNFPAAM 184 (504)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHTTCCEEEE-------CCSSTTEEEEEEEEECCEEEEECCSSSTTHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-------ccccccccceeeccCceEEEEECCCcchHHH
Confidence 999999999999999999999999999999988766544321 1112246788999999999999999999999
Q ss_pred HHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHHHH
Q 011080 173 AVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGISIS 251 (494)
Q Consensus 173 ~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~v~ 251 (494)
.++++++||++||+||+|||+.+|+++.+|++++.++|+|+|++|+|+|++.++++.|++||+|+.|+|||| .+|+.+.
T Consensus 185 ~~~~~a~ALaaGN~VVlKPs~~tp~t~~~l~~l~~eaGlP~gv~~vv~g~~~~~g~~L~~~p~v~~V~FTGS~~~G~~i~ 264 (504)
T 3ek1_A 185 ITRKAAPALAAGCTMIVRPADLTPLTALALGVLAEKAGIPAGVLQIVTGKAREIGAELTSNDTVRKLSFTGSTEVGRLLM 264 (504)
T ss_dssp HHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHTTCCTTTEEECCSCHHHHHHHHHHCTTCCEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCcccEEEEeCCCHHHHHHHHhCCCcCEEEEECCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988889999999999999999999 9999999
Q ss_pred HHc--CCCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccccCCC-
Q 011080 252 KKA--GMIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTVGAP- 328 (494)
Q Consensus 252 ~~a--~~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~g~p- 328 (494)
+.+ .+||+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||+++||+|+++|+++++++++|||
T Consensus 265 ~~aa~~lk~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~ 344 (504)
T 3ek1_A 265 AQCAPTIKRISLELGGNAPFIVFDDADLDAAVDGAMVSKYRNAGQTCVCANRIYVQRGVYDKFAEKLAAKVKELKVGNGT 344 (504)
T ss_dssp HHHGGGTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTSEEEEEEEHHHHHHHHHHHHHHHHTCCBSCTT
T ss_pred HhhhhhcCCeEecCCCCCeeEEcCCCCHHHHHHHHHHHHHhcCCCCCCCCCEEEEehhHHHHHHHHHHHHHhhcccCCCc
Confidence 887 47999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHHHHHcCCEEeeccc-CCCceeecEEEeeCCCCCCCcccccccceeeeEecCCHHHHH
Q 011080 329 EDDCDITPVVTESSANFIEGLVMDAKQKAATFCQEYK-REGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGI 407 (494)
Q Consensus 329 ~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~~~~~-~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~~~eai 407 (494)
++++++||++++.+++++.++|++++++|++++.++. .+|+|++|||+.+++++|++++||+||||++|++|+|+||||
T Consensus 345 ~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi 424 (504)
T 3ek1_A 345 EPGVVIGPMIEEKAITKVKAHIEDAVSKGAKLITGGKELGGLFFEPGILTGVTSDMLVAKEETFGPLAPLFAFDTEEEVI 424 (504)
T ss_dssp STTCCBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCEEETTEECCEEEEEECTTSGGGTSCCCSSEEEEEEECCHHHHH
T ss_pred cccCccccccCHHHHHHHHHHHHHHHHCCCEEEeCCccCCCceECCeEEecCCCcChhhcccccCcEEEEEEeCCHHHHH
Confidence 8899999999999999999999999999999964433 468999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCCCcchHHHHHHhhceeEEEEecC
Q 011080 408 HHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVINLP 487 (494)
Q Consensus 408 ~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~k~i~~~~~ 487 (494)
+++|+++|||+++|||+|.++++++++++++|+|+||+..... ..+||||+|+||+|+++|.+|+++|++.|+|+++++
T Consensus 425 ~~aN~~~~GL~a~v~t~d~~~a~~~a~~l~aG~V~vN~~~~~~-~~~PfGG~k~SG~Gr~~G~~gl~~~t~~K~v~~~~g 503 (504)
T 3ek1_A 425 AQANDTIFGLAAYFYTENFSRAIRVSEALEYGMVGHNTGLISN-EVAPFGGVKQSGLGREGSKYGIEEYLETKYICSAYK 503 (504)
T ss_dssp HHHHCSSCCSEEEEECCBHHHHHHHHHHSCCSEEEESCSCCCC-SSSCBCCSGGGEESCBSTTTSGGGGEEEEEEEEECC
T ss_pred HHHhCCCCCeEEEEEcCCHHHHHHHHHhCCcCeEEECCCCCCC-CCCCcCCcCcCcCCCCCcHHHHHHhhceEEEEEecC
Confidence 9999999999999999999999999999999999999876443 459999999999999999999999999999998764
No 6
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.63A {Marinobacter aquaeolei}
Probab=100.00 E-value=2.2e-103 Score=821.48 Aligned_cols=467 Identities=28% Similarity=0.452 Sum_probs=440.9
Q ss_pred CcccceeCCeeeeCCCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHH
Q 011080 12 GVYKFFYDGVWRKSSSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKA 91 (494)
Q Consensus 12 ~~~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ 91 (494)
..+++||||+|+.+.++..++++||+||+++++++.++.+++++++++|++||+.|+.++..+|.++|+++++.|+++++
T Consensus 10 ~~~~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ 89 (506)
T 3rh9_A 10 ENLTGYIGGRWKDSAGGATFDVYNPATGSVIAKVPSMPEEDVVAAVEAGQSALRLTNPWPIETRRKWLEDIRDGLKENRE 89 (506)
T ss_dssp SCCSEEETTEEECCCTTCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHCCSSSCCCHHHHHHHHHHHHHHHHHTHH
T ss_pred cccCeeECCEEeeCCCCCEEEEECCCCCCEEEEEcCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHH
Confidence 35679999999987778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEe-eeceeEEeeCCCCchH
Q 011080 92 PIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSK-IPLGVVLAIPPFNYPV 170 (494)
Q Consensus 92 ~l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~P~GVv~~i~p~n~P~ 170 (494)
+|++++++|+|||+.+++.|+..+++.+++++..++++.+...+ .. .+...++.+ +|+|||++|+|||||+
T Consensus 90 ela~~~~~e~Gk~~~ea~~ev~~~~~~l~~~a~~~~~~~~~~~~-------~~-~~~~~~~~~~~P~GVV~~I~PwN~P~ 161 (506)
T 3rh9_A 90 EIGRILCMEHGKPWKEAQGEVDYAAGFFDYCAKHISALDSHTIP-------EK-PKDCTWTVHYRPVGVTGLIVPWNFPI 161 (506)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHGGGGCCEECS-------CC-GGGCEEEEEEEECCSEEEECCSSSTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-------cC-CCceeeEeecccceEEEEECCCchHH
Confidence 99999999999999999999999999999999998887654321 11 245678888 9999999999999999
Q ss_pred HHHHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHH
Q 011080 171 NLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGIS 249 (494)
Q Consensus 171 ~~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~ 249 (494)
.+.++++++||++||+||+|||+.+|+++.+|++++.++|+|+|++|+|+|++.++++.|++||+||.|+|||| .+|+.
T Consensus 162 ~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~eaGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~vG~~ 241 (506)
T 3rh9_A 162 GMIAKKLSAALAAGCPSVIKPASETPLTMIAFFSVMDKLDLPDGMVNLVMGKASVIGKVLCEHKDVPMLSFTGSTEVGRK 241 (506)
T ss_dssp HHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHTTTTCCTTSEEECCSCHHHHHHHHHHCTTCCEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEEcCCccHHHHHHHHHHHHHhCcChhhEEEEeCCChHHHHHHHhCCCCCEEEEECCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999 99999
Q ss_pred HHHHc--CCCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccccCC
Q 011080 250 ISKKA--GMIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTVGA 327 (494)
Q Consensus 250 v~~~a--~~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~g~ 327 (494)
|.+.+ +++|+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||++++|+|+++|+++++++++||
T Consensus 242 i~~~aa~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~ 321 (506)
T 3rh9_A 242 LIVDTAEQVKKLALELGGNAPFIVFDDADLEAAADNLIANKFRGGGQTCVCANRIFVHEKVADAFGQKLAERVNKMTVGD 321 (506)
T ss_dssp HHHHTTTTTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSSSSCCEEEEETTTHHHHHHHHHHHHHHCCBSC
T ss_pred HHHHhhhcCCceEEecCCCCceEECCCCCHHHHHHHHHHHHHHhCCCCcccCcEEEEcHHHHHHHHHHHHHHHHhccCCC
Confidence 99987 4899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCCCCccCCHHHHHHHHHHHHHHHHcCCEEeeccc---C-CCceeecEEEeeCCCCCCCcccccccceeeeEecCC
Q 011080 328 P-EDDCDITPVVTESSANFIEGLVMDAKQKAATFCQEYK---R-EGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINS 402 (494)
Q Consensus 328 p-~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~~~~~---~-~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~ 402 (494)
| ++++++||++++.+++++.++|++++++|+++..++. . .|+|++|||+.+++++|++++||+||||++|++|+|
T Consensus 322 p~~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~ 401 (506)
T 3rh9_A 322 GMNDGIDIGPLINKQGFDKVKRHLQDALDKGASLVAGKQPAELGDGLFFPPTVVQGVDREMCCYQEETFGPLVPMALFRT 401 (506)
T ss_dssp TTSTTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEESCCGGGCCSSSCCCCEEEECCCTTSHHHHSCCCSSEEEEEEECC
T ss_pred CcccCCcccccCCHHHHHHHHHHHHHHHHCCCEEEecCCcCCCCCCcEECCeEEccCCCCChhhcccccCcEEEEEEeCC
Confidence 9 8899999999999999999999999999999954433 2 799999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCCCcchHHHHHHhhceeEE
Q 011080 403 VEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKST 482 (494)
Q Consensus 403 ~~eai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~k~i 482 (494)
+||||+++|+++|||+++|||+|.++++++++++++|+|+||++.... ..+||||+|+||+|+++|++|+++|++.|+|
T Consensus 402 ~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~-~~~PfGG~k~SG~G~~~G~~gl~~ft~~K~v 480 (506)
T 3rh9_A 402 EEEVIDAGNDTEFGLASYVFTADAERAQRVAAGLRFGHVGWNTGTGPT-PEAPFGGMKASGIGREGGLEGLFEFVEAQTV 480 (506)
T ss_dssp HHHHHHHHTCSSCCSEEEEECSCHHHHHHHHHHCCCSEEEESCCCCCC-TTSCBCCSGGGEESCBSHHHHHTTTEEEEEE
T ss_pred HHHHHHHHhCCCCCceEEEEcCCHHHHHHHHHhCCcceEEEcCCCCCC-CCCCccCcCcCcCCcCccHHHHHHhcceEEE
Confidence 999999999999999999999999999999999999999999987755 4599999999999999999999999999999
Q ss_pred EEecC
Q 011080 483 VINLP 487 (494)
Q Consensus 483 ~~~~~ 487 (494)
+++..
T Consensus 481 ~~~~~ 485 (506)
T 3rh9_A 481 PRGFA 485 (506)
T ss_dssp EEC--
T ss_pred EEcCc
Confidence 88753
No 7
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} SCOP: c.82.1.0 PDB: 3iwk_A* 4a0m_A*
Probab=100.00 E-value=1.4e-102 Score=817.29 Aligned_cols=474 Identities=30% Similarity=0.472 Sum_probs=443.5
Q ss_pred cCCcccceeCCeeeeCCCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhH-----HhcCCCHHHHHHHHHHHHH
Q 011080 10 ENGVYKFFYDGVWRKSSSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQK-----SWAKTPLWKRAELLHKAAA 84 (494)
Q Consensus 10 ~~~~~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~-----~w~~~~~~~R~~~L~~~a~ 84 (494)
+-...++||||+|+.+.++..++++||+||+++++++.++.+|+++++++|++||+ .|+.++..+|.++|+++++
T Consensus 4 ~~~~~~~~i~g~~~~~~~~~~~~~~nP~tg~~i~~~~~~~~~~v~~av~~A~~A~~~~~~~~w~~~~~~~R~~~L~~~a~ 83 (503)
T 3iwj_A 4 PIPTRQLFINGDWKAPVLNKRIPVINPATQNIIGDIPAATKEDVDVAVAAAKTALTRNKGADWATASGAVRARYLRAIAA 83 (503)
T ss_dssp CCCCCCEEETTEEECCTTCCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHHGGGGTTTTSSCHHHHHHHHHHHHH
T ss_pred CCCCCceeECCEEecCCCCCeEEeECCCCCCEEEEEcCCCHHHHHHHHHHHHHHhhhcCCcchhhCCHHHHHHHHHHHHH
Confidence 34567899999999887788999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHcHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeC
Q 011080 85 ILKEQKAPIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIP 164 (494)
Q Consensus 85 ~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~ 164 (494)
.|++++++|++++++|+|||+.+++.|+..+++.+++++..+.++.+...... ..+ ..+...++.++|+|||++|+
T Consensus 84 ~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~P~GVv~~I~ 159 (503)
T 3iwj_A 84 KVTEKKPELAKLESIDCGKPLDEAAWDIDDVAGCFEYYADLAEKLDARQKAPV--SLP--MDTFKSHVLREPIGVVGLIT 159 (503)
T ss_dssp HHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEE--CCS--CTTEEEEEEEEECCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc--ccc--CCCccceEEEcCCceEEEEC
Confidence 99999999999999999999999999999999999999998888766532110 011 12457889999999999999
Q ss_pred CCCchHHHHHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc
Q 011080 165 PFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG 244 (494)
Q Consensus 165 p~n~P~~~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs 244 (494)
|||||+.+.++++++||++||+||+|||+.+|+++.+|++++.++|+|+|++|+|+|++.++++.|+.||+++.|+||||
T Consensus 160 PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~~~g~~L~~~~~v~~I~FTGS 239 (503)
T 3iwj_A 160 PWNYPMLMATWKVAPALAAGCAAILKPSELASLTCLELGEICKEVGLPPGVLNILTGLGPEAGAPLATHPDVDKVAFTGS 239 (503)
T ss_dssp CSSSHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHHTCCTTSEEECCSCHHHHTHHHHTCTTCCEEEEESC
T ss_pred CCchHHHHHHHHHHHHHhcCCeEEEECCCcchHHHHHHHHHHHHhCcCcCeEEEEeCCcHHHHHHHhhCCCccEEEEECc
Confidence 99999999999999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred -HHHHHHHHHc--CCCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHh
Q 011080 245 -DTGISISKKA--GMIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVA 321 (494)
Q Consensus 245 -~~~~~v~~~a--~~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~ 321 (494)
.+|+.|.+.+ +++|+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||++++|+|+++|+++++
T Consensus 240 ~~~G~~i~~~aa~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~ 319 (503)
T 3iwj_A 240 SATGSKIMTAAAQLVKPVSLELGGKSPLVVFEDVDLDKAAEWAIFGCFWTNGQICSATSRLILHESIATEFLNRIVKWIK 319 (503)
T ss_dssp HHHHHHHHHHHGGGTCCEEEECCCCEEEEECSSSCHHHHHHHHHHHHTGGGGCCTTCEEEEEEETTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCCceEEcCCCCHHHHHHHHHHHHHhcCCCCcccCCeeEEcHHHHHHHHHHHHHHHH
Confidence 9999999887 4799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCC-CCCCCCCccCCHHHHHHHHHHHHHHHHcCCEEeeccc-----CCCceeecEEEeeCCCCCCCccccccccee
Q 011080 322 KLTVGAP-EDDCDITPVVTESSANFIEGLVMDAKQKAATFCQEYK-----REGNLIWPLLLDNVRPDMRIAWEEPFGPVL 395 (494)
Q Consensus 322 ~~~~g~p-~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~~~~~-----~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl 395 (494)
++++||| ++++++||++++.+++++.+++++++++|+++..|+. ..|+|++|||+.+++++|++++||+||||+
T Consensus 320 ~~~~g~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl 399 (503)
T 3iwj_A 320 NIKISDPLEEGCRLGPVVSEGQYEKILKFVSNAKSEGATILTGGSRPEHLKKGFFIEPTIITDVTTNMQIWREEVFGPVL 399 (503)
T ss_dssp TCCBSCTTSTTCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSCCTTCCSSSCCCCEEEESCCTTSHHHHSCCCSSEE
T ss_pred hccCCCCCCCCCcccCccCHHHHHHHHHHHHHHHHCCCEEEecCCCCccCCCCceeCCeeeecCCCCchhhCceeeCceE
Confidence 9999999 8899999999999999999999999999999954332 468999999999999999999999999999
Q ss_pred eeEecCCHHHHHHHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCCCcchHHHHHH
Q 011080 396 PVIRINSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINM 475 (494)
Q Consensus 396 ~v~~~~~~~eai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~ 475 (494)
+|++|+|+||||+++|+++|||+++|||+|.++++++++++++|+|+||++.... ..+||||+|+||+|+++|.+|+++
T Consensus 400 ~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~iN~~~~~~-~~~PfGG~k~SG~G~~~G~~g~~~ 478 (503)
T 3iwj_A 400 CVKTFSTEEEAIDLANDTVYGLGAAVISNDLERCERVTKAFKAGIVWVNCSQPCF-TQAPWGGVKRSGFGRELGEWGLDN 478 (503)
T ss_dssp EEEEESSHHHHHHHHTCSSCCSEEEEECSCHHHHHHHHHHCCSSEEEESSSCCCC-TTSCBCCSGGGEECCBSHHHHHHT
T ss_pred EEEEeCCHHHHHHHHhCCCCCcEEEEECCCHHHHHHHHHhCCcceEEEcCCCCCC-CCCCcCCcCcccCCCcchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999876544 459999999999999999999999
Q ss_pred hhceeEEEEecCC
Q 011080 476 MTKIKSTVINLPT 488 (494)
Q Consensus 476 ~~~~k~i~~~~~~ 488 (494)
|++.|+|+++.+.
T Consensus 479 f~~~k~v~~~~~~ 491 (503)
T 3iwj_A 479 YLSVKQVTQYISE 491 (503)
T ss_dssp TEEEEEEEEECCS
T ss_pred hhCeEEEEEeCCC
Confidence 9999999998653
No 8
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Probab=100.00 E-value=6.4e-103 Score=818.75 Aligned_cols=468 Identities=31% Similarity=0.478 Sum_probs=441.6
Q ss_pred CcccceeCCeeeeCCCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHH
Q 011080 12 GVYKFFYDGVWRKSSSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKA 91 (494)
Q Consensus 12 ~~~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ 91 (494)
..+++||||+|+.+.++..++++||+||+++++++.++.+|+++++++|++||+.|+.++..+|.++|+++++.|+++++
T Consensus 11 ~~~~~~I~G~~~~~~~~~~~~~~nP~tg~~i~~~~~~~~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ 90 (497)
T 3k2w_A 11 KNKVNFIGGQYVPSNESDTIDILSPSTGKVIGEIPAGCKADAENALEVAQAAQKAWAKLTARTRQNMLRTFANKIRENKH 90 (497)
T ss_dssp CTTCEEETTEEECCSSCCEEEEECSSSCSEEEEEECCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTHH
T ss_pred cccceeECCEEecCCCCCEEEEECCCCCCEEEEEcCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999988778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchHH
Q 011080 92 PIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVN 171 (494)
Q Consensus 92 ~l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~~ 171 (494)
+|++++++|+|||+.+++.|+..+++.+++++..++++.+...+ ....+...++.++|+|||++|+|||||+.
T Consensus 91 ~la~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~~~~P~GVV~~I~PwN~P~~ 163 (497)
T 3k2w_A 91 ILAPMLVAEQGKLLSVAEMEVDVTATFIDYGCDNALTIEGDILP-------SDNQDEKIYIHKVPRGVVVGITAWNFPLA 163 (497)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHTTTTCCEEEEE-------CSSTTEEEEEEEEECSEEEEECCSSSHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-------cCCCCcceeEEEcCCceEEEECCCccHHH
Confidence 99999999999999999999999999999999888777654321 11235678899999999999999999999
Q ss_pred HHHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHHH
Q 011080 172 LAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGISI 250 (494)
Q Consensus 172 ~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~v 250 (494)
+.++++++||++||+||+|||+.+|+++.+|++++.++|+|+|++|+|+|++.++++.|+.||+||.|+|||| .+|+.+
T Consensus 164 ~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~ll~~aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~fTGS~~~G~~i 243 (497)
T 3k2w_A 164 LAGRKIGPALITGNTMVLKPTQETPLATTELGRIAKEAGLPDGVLNVINGTGSVVGQTLCESPITKMITMTGSTVAGKQI 243 (497)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSSSCHHHHHHHHHHHHTTCCTTSEEECCSCTTTHHHHHHHCSSEEEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHhCcCcCeEEEEeCCchHHHHHHHhCCCcCEEEEECcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988889999999999999999999 999999
Q ss_pred HHHcC--CCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccccCCC
Q 011080 251 SKKAG--MIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTVGAP 328 (494)
Q Consensus 251 ~~~a~--~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~g~p 328 (494)
.+.++ ++|+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||++++|+|+++|+++++++++|||
T Consensus 244 ~~~aa~~l~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~vg~p 323 (497)
T 3k2w_A 244 YKTSAEYMTPVMLELGGKAPMVVMDDADLDKAAEDALWGRFANCGQVCTCVERLYVHASVYDEFMAKFLPLVKGLKVGDP 323 (497)
T ss_dssp HHHHTTTTCCEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCSTTSEEEEEEETTTHHHHHHHHHHHHHTCCBSCT
T ss_pred HHHhhhcCCCeEEEcCCCCceEEcCCCCHHHHHHHHHHHHHhCCCCCCcCCcEEEEeHHHHHHHHHHHHHHHHhccCCCC
Confidence 99874 7999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCCCCCCccCCHHHHHHHHHHHHHHHHcCCEEeeccc-----C--CCceeecEEEeeCCCCCCCcccccccceeeeEec
Q 011080 329 -EDDCDITPVVTESSANFIEGLVMDAKQKAATFCQEYK-----R--EGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRI 400 (494)
Q Consensus 329 -~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~~~~~-----~--~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~ 400 (494)
++++++||++++.+++++.+++++++++|+++..|+. . +|+|++|||+.+++++|++++||+||||++|++|
T Consensus 324 ~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~ 403 (497)
T 3k2w_A 324 MDADSQMGPKCNQREIDNIDHIVHEAIKQGATVATGGKTATVEGFEGGCWYEPTVLVDVKQDNIVVHEETFGPILPIVKV 403 (497)
T ss_dssp TSTTCSBCCCSCHHHHHHHHHHHHHHHHHHCEEEECCC---------CCCCCCEEEESCCTTSHHHHSCCCSSEEEEEEE
T ss_pred CCCCCccccCcCHHHHHHHHHHHHHHHHCCCEEEecCccCCccccCCCceeCCEEEecCCCCcHhhcCCccCcEEEEEEe
Confidence 8899999999999999999999999999999954432 1 6899999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCCCcchHHHHHHhhcee
Q 011080 401 NSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIK 480 (494)
Q Consensus 401 ~~~~eai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~k 480 (494)
+|+||||+++|+++|||+++|||+|.++++++++++++|+|+||+++... ..+||||+|+||+|+++|.+|+++|++.|
T Consensus 404 ~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~-~~~PfGG~k~SG~G~~~G~~gl~~ft~~k 482 (497)
T 3k2w_A 404 SSMEQAIEFCNDSIYGLSAYVHTQSFANINQAISDLEVGEVYINRGMGEQ-HQGFHNGWKQSGFGGEDGKFGLEQYLEKK 482 (497)
T ss_dssp SCHHHHHHHHTCSSEESEEEEECSBHHHHHHHHHHCCSSEEEESCCSCCC-TTSCBCCEETSEESCBSHHHHHHTTEEEE
T ss_pred CCHHHHHHHHhcCCCCcEEEEEcCCHHHHHHHHHhCCeeEEEEcCCCCCC-CCCCcCCcCCCcCCccchHHHHHHhcceE
Confidence 99999999999999999999999999999999999999999999988765 55999999999999999999999999999
Q ss_pred EEEEecC
Q 011080 481 STVINLP 487 (494)
Q Consensus 481 ~i~~~~~ 487 (494)
+|+++++
T Consensus 483 ~v~~~~~ 489 (497)
T 3k2w_A 483 TVYINEA 489 (497)
T ss_dssp EEEEECC
T ss_pred EEEEEcc
Confidence 9998865
No 9
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, tetramer; 2.00A {Sinorhizobium meliloti}
Probab=100.00 E-value=1.5e-102 Score=819.24 Aligned_cols=468 Identities=27% Similarity=0.443 Sum_probs=441.6
Q ss_pred cccceeCCeeeeCCCCCeEEeeCCCC-CCceEEEeCCCHHHHHHHHHHHHHHh--HHhcCCCHHHHHHHHHHHHHHHHHc
Q 011080 13 VYKFFYDGVWRKSSSGKSVTIINPTT-RKPHFRVQACTQEEVNKVVETAKLAQ--KSWAKTPLWKRAELLHKAAAILKEQ 89 (494)
Q Consensus 13 ~~~~~i~g~~~~~~~~~~~~v~~P~t-g~~i~~~~~~~~~~v~~av~~A~~a~--~~w~~~~~~~R~~~L~~~a~~l~~~ 89 (494)
.+++||||+|+.+.++..++++||+| |+++++++.++.+++++++++|++|| ..|+.++..+|.++|+++++.|+++
T Consensus 22 ~~~~~I~G~~~~~~~~~~~~v~nP~t~g~~i~~~~~~~~~dv~~av~aA~~A~~~~~w~~~~~~~R~~~L~~~a~~l~~~ 101 (528)
T 3u4j_A 22 RYQMLVDGKSVDAASGSTIDRVSPGHAGEVVGTWPEASADDVRKAVAAARKAFDAGPWPRMSGAERSRLMFKVADLILAR 101 (528)
T ss_dssp BCCEEETTEEECCTTCCEEEEECTTSTTCEEEEEECCCHHHHHHHHHHHHHHHHTSSGGGSCHHHHHHHHHHHHHHHHHT
T ss_pred ccceeECCEEecCCCCCEEEEeCCCCCCcEEEEEeCCCHHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHHHHHHH
Confidence 46799999999877788999999999 99999999999999999999999999 7899999999999999999999999
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCch
Q 011080 90 KAPIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYP 169 (494)
Q Consensus 90 ~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P 169 (494)
+++|++++++|+|||+.+++.|+..+++.++++++.++++.+...+ ....+...++.++|+|||++|+|||||
T Consensus 102 ~~ela~~~~~e~Gk~~~ea~~ev~~~~~~l~~~a~~~~~~~~~~~~-------~~~~~~~~~~~~~P~GVV~~I~PwN~P 174 (528)
T 3u4j_A 102 QEELALIESLEVGKPIAQARGEIGFCADLWSYAAGQARALEGQTHN-------NIGDDRLGLVLREPVGVVGIITPWNFP 174 (528)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEC-------CSCTTEEEEEEEEECCEEEEECCSSSH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCeeec-------cCCCCceeEEEeccceEEEEECCCccH
Confidence 9999999999999999999999999999999999988776654321 111246788999999999999999999
Q ss_pred HHHHHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHH
Q 011080 170 VNLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGI 248 (494)
Q Consensus 170 ~~~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~ 248 (494)
+.+.++++++||++||+||+|||+.+|+++.+|++++.++|+|+|++|+|+|++.++++.|+.||+||.|+|||| .+|+
T Consensus 175 ~~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~eaGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~ 254 (528)
T 3u4j_A 175 FIIASERVPWAIGSGCTVVLKPSEFTSGTSIRLAELAREAGIPDGVFNVVTGYGDPAGQVLAEDPNVDMVAFTGSVRVGT 254 (528)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCTTCCHHHHHHHHHHHHHTCCTTSEEECCCSSTTHHHHHHHCTTCCEEEEESCHHHHH
T ss_pred HHHHHHHHHHHHHcCCeEEEEcCCccHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHhCCCcCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999988889999999999999999999 9999
Q ss_pred HHHHHc--CCCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccccC
Q 011080 249 SISKKA--GMIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTVG 326 (494)
Q Consensus 249 ~v~~~a--~~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~g 326 (494)
.|.+.+ .++|+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||++++|+|+++|+++++++++|
T Consensus 255 ~i~~~aa~~lk~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G 334 (528)
T 3u4j_A 255 KLGEIAARTVKRVGLELGGKGPQIVFADADLDAAADGIAYGVYHNAGQCCISGSRLLVQEGIRDALMERLLDISRKVAFG 334 (528)
T ss_dssp HHHHHHHTTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEGGGHHHHHHHHHHHHHHCCEE
T ss_pred HHHHHHHhcCCceEEecCCCCeeEECCCCCHHHHHHHHHHHHhhcCCCCCcCCCEEEEechHHHHHHHHHHHHHHhhcCC
Confidence 999876 489999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCCCCCccCCHHHHHHHHHHHHHHHHcCCEEeecccC----CCceeecEEEeeCCCCCCCcccccccceeeeEecC
Q 011080 327 AP-EDDCDITPVVTESSANFIEGLVMDAKQKAATFCQEYKR----EGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRIN 401 (494)
Q Consensus 327 ~p-~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~~~~~~----~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~ 401 (494)
|| ++++++||++++.+++++.+++++++++|+++..|+.. +|+|++|||+.+++++|++++||+||||++|++|+
T Consensus 335 ~p~~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~ 414 (528)
T 3u4j_A 335 DPLNERTKIGAMISEAHAEKVHSYVTAGITSGAELLLGGERIGREAGLYYAPTVFAGVTPDMSIAREEIFGPVLSTLTFK 414 (528)
T ss_dssp CTTSTTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSEECTTTSCEECCEEEESCCTTSHHHHSCCCSSEEEEEEES
T ss_pred CCCCcCCccCCccCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCCcEecceEEecCCCCCccccceeeccEEEEEEeC
Confidence 99 88999999999999999999999999999999644322 79999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCCCcchHHHHHHhhceeE
Q 011080 402 SVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKS 481 (494)
Q Consensus 402 ~~~eai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~k~ 481 (494)
|+||||+++|+++|||+++|||+|.++++++++++++|+|+||+.+... ..+||||+|+||+|+++|.+|+++|++.|+
T Consensus 415 ~~deAi~~aN~~~~GL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~-~~~PfGG~k~SG~Gr~~G~~gl~~ft~~K~ 493 (528)
T 3u4j_A 415 TADEAVALANATEFGLSASVWSTNLETALQTIRRIRAGRCWINSVIDGT-PELPIGGYKKSGLGRELGRYGFDEYSQFKG 493 (528)
T ss_dssp SHHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCCSEEEESCCSCCC-TTSCBCCSGGGEESCBSTTHHHHHTEEEEE
T ss_pred CHHHHHHHHhcCCCCcEEEEEcCCHHHHHHHHHhCCeeEEEECCCCCCC-CCCCcCCcCcCCCCcCchHHHHHHhhceEE
Confidence 9999999999999999999999999999999999999999999987654 559999999999999999999999999999
Q ss_pred EEEecCC
Q 011080 482 TVINLPT 488 (494)
Q Consensus 482 i~~~~~~ 488 (494)
|+++.+.
T Consensus 494 v~~~~~~ 500 (528)
T 3u4j_A 494 VHVTLGR 500 (528)
T ss_dssp EEEESSC
T ss_pred EEEeCCC
Confidence 9998763
No 10
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology; HET: MSE NAD; 2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Probab=100.00 E-value=8.2e-103 Score=816.57 Aligned_cols=465 Identities=24% Similarity=0.399 Sum_probs=438.4
Q ss_pred CcccceeCCeeeeCCCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHH
Q 011080 12 GVYKFFYDGVWRKSSSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKA 91 (494)
Q Consensus 12 ~~~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ 91 (494)
..+++||||+|+.+.++ .++++||+||+++++++.++.+|+++|+++|++||+.|+.++..+|.++|+++++.|+++++
T Consensus 24 ~~~~~~I~G~~~~~~~~-~~~v~nP~tg~~i~~v~~~~~~dv~~Av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ 102 (498)
T 4f3x_A 24 MDTQLLIGSRFEAGTEA-EEHILNPRTGAGIIDLAEASHAQIDAAVDAAERAFVGWSQTTPAERSNALLKIADAIEKEAD 102 (498)
T ss_dssp CCCCEEETTEEECCCSC-EEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHH
T ss_pred cccCeeECCEEeeCCCC-eEEEECCCCCCEEEEEcCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHH
Confidence 45689999999987666 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCChHHH-HHHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchH
Q 011080 92 PIAECLVKEIAKPAKDA-VTEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPV 170 (494)
Q Consensus 92 ~l~~~~~~e~Gk~~~~a-~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~ 170 (494)
+|++++++|+|||+.++ +.|+..+++.++++++.++++.+...+. ...+...++.++|+|||++|+|||||+
T Consensus 103 ela~~~~~e~Gk~~~ea~~~ev~~~~~~l~~~a~~~~~~~~~~~~~-------~~~~~~~~~~~~P~GVv~~I~PwN~P~ 175 (498)
T 4f3x_A 103 EFAALEALNCGKPINAVKNDELPAIIDCWRFFAGAVRNLHAPAAGE-------YLPGHTSMIRRDPIGIVGSIAPWNYPL 175 (498)
T ss_dssp HHHHHHHHHHCCCHHHHHHTHHHHHHHHHHHHHHHTTCCEEECBEE-------EETTEEEEEEEEECCEEEEECCSSSHH
T ss_pred HHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHhcCccccC-------CcccccceEEEcCcceEEEECCCchHH
Confidence 99999999999999999 8899999999999999887765443211 012466889999999999999999999
Q ss_pred HHHHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHH
Q 011080 171 NLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGIS 249 (494)
Q Consensus 171 ~~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~ 249 (494)
.+.++++++||++||+||+|||+.+|+++.+|++++.++ +|+|++|+++|++.++++.|+.||+|+.|+|||| .+|+.
T Consensus 176 ~~~~~~~a~ALaaGNtVVlKPs~~tp~t~~~l~~l~~ea-lP~gv~nvv~g~~~~~g~~L~~~p~v~~V~FTGS~~~G~~ 254 (498)
T 4f3x_A 176 MMMAWKLAPAIGGGNTVVFKPSEQTPLTALKLARLIADI-LPEGVVNVITGRGETVGNALINHPKVGMVSITGDIATGKK 254 (498)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCTTCCHHHHHHHHHHHTT-SCTTSEEECCCCTTTHHHHHHTCTTCCEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEECCcccHHHHHHHHHHHHHh-CCcCeEEEEeCCchHHHHHHHhCCCcCEEEEECCHHHHHH
Confidence 999999999999999999999999999999999999999 9999999999988889999999999999999999 99999
Q ss_pred HHHHc--CCCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccccCC
Q 011080 250 ISKKA--GMIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTVGA 327 (494)
Q Consensus 250 v~~~a--~~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~g~ 327 (494)
|.+.+ .+||+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||+++||+|+++|+++++++++||
T Consensus 255 i~~~aa~~~k~v~lElGGk~p~IV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~vG~ 334 (498)
T 4f3x_A 255 VLAAAAKTVKRTHLELGGKAPVIVYGDADLEAVVNGIRTFGYYNAGQDCTAACRIYAEAGIYEKLVADLTSAVSTIRYNL 334 (498)
T ss_dssp HHHHHHTTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHTTGGGGCSTTCEEEEEEETTTHHHHHHHHHHHHTTCCCSC
T ss_pred HHHHHHhhCCceeecCCCCCcEEECCCCCHHHHHHHHHHHHHhcCCCCccCCceEEecHHHHHHHHHHHHHHHHhcccCC
Confidence 99876 4799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCCCCccCCHHHHHHHHHHHHHHHHcCC-EEe-ecc--cCCCceeecEEEeeCCCCCCCcccccccceeeeEecCC
Q 011080 328 P-EDDCDITPVVTESSANFIEGLVMDAKQKAA-TFC-QEY--KREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINS 402 (494)
Q Consensus 328 p-~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga-~v~-~~~--~~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~ 402 (494)
| ++++++||++++.+++++.++|++++++|+ ++. +|. ..+|+|++|||+.+++++|++++||+||||++|++|+|
T Consensus 335 p~d~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~~v~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~ 414 (498)
T 4f3x_A 335 DDDTENEIGPLISRRQRDRVASFVERAADQKHIEITTGGRTGSDEGFFFQPTVVAGATQEDEIVRREVFGPVVSVTRFTG 414 (498)
T ss_dssp SSGGGCSSCCCSCHHHHHHHHHHHHHHHHSTTCEEEECCSBCCSSSCCBCCEEEESCCTTSHHHHSCCCSSEEEEEEECT
T ss_pred CccccCccccCcCHHHHHHHHHHHHHHHHCCCCEEEECCccCCCCCcEECCEEeecCCCCChhhCCceeCcEEEEEEeCC
Confidence 9 889999999999999999999999999999 885 443 24799999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCCCcchHHHHHHhhceeEE
Q 011080 403 VEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKST 482 (494)
Q Consensus 403 ~~eai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~k~i 482 (494)
+||||+++|+++|||+++|||+|.+++.++++++++|+|+||+++... ..+||||+|+||+|+++|.+|+++|++.|+|
T Consensus 415 ~deAi~~aN~~~~GL~a~v~t~d~~~a~~~a~~l~aG~V~vN~~~~~~-~~~PfGG~k~SG~Gr~~G~~~l~~~t~~k~v 493 (498)
T 4f3x_A 415 KDDAVAWANDSDYGLASSVWTKDISKAMRAASRLQYGCTWINTHFMLT-NEMPHGGIKQSGYGKDMSVYALEDYTAVRHI 493 (498)
T ss_dssp TSCHHHHHHSSSCCSEEEEECSBHHHHHHHHHHCCSSEEEESCCSCCC-TTSCBCCSGGGEECCBSHHHHHHHTEEEEEE
T ss_pred HHHHHHHHhcCCCCceEEEECCCHHHHHHHHHhCCcceEEEcCCCCCC-CCCCcCCcCcCCcCccchHHHHHHhhceEEE
Confidence 999999999999999999999999999999999999999999987765 5599999999999999999999999999999
Q ss_pred EEec
Q 011080 483 VINL 486 (494)
Q Consensus 483 ~~~~ 486 (494)
++++
T Consensus 494 ~~~~ 497 (498)
T 4f3x_A 494 MINH 497 (498)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 11
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology, oxidoreductase; 1.50A {Methanocaldococcus jannaschii} PDB: 3rhd_A*
Probab=100.00 E-value=1.5e-102 Score=812.19 Aligned_cols=460 Identities=34% Similarity=0.567 Sum_probs=428.4
Q ss_pred ceeCCeeeeCCCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHHHHHH
Q 011080 16 FFYDGVWRKSSSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKAPIAE 95 (494)
Q Consensus 16 ~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~ 95 (494)
+||||+|+.+ +. ++++||+||+++++++.++.+|+++++++|++||+.|+.++..+|.++|+++++.|++++++|++
T Consensus 2 ~~I~G~~~~~--~~-~~~~nP~tg~~i~~~~~~~~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~ 78 (486)
T 3pqa_A 2 MFIDGKWINR--ED-MDVINPYSLEVIKKIPALSREEAKEAIDTAEKYKEVMKNLPITKRYNILMNIAKQIKEKKEELAK 78 (486)
T ss_dssp -------CCC--CC-EEEECTTTCCEEEEECCCCHHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred eeECCEEecC--CC-eEEECCCCCCEEEEEcCCCHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999874 45 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchHHHHHh
Q 011080 96 CLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVS 175 (494)
Q Consensus 96 ~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~~~~~~ 175 (494)
++++|+|||..+++.|+..+++.++++++.+.++.+...+ . .+...++.++|+|||++|+|||||+.+.++
T Consensus 79 ~~~~e~Gk~~~ea~~Ev~~~~~~~~~~a~~~~~~~~~~~~-------~--~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~ 149 (486)
T 3pqa_A 79 ILAIDAGKPIKQARVEVERSIGTFKLAAFYVKEHRDEVIP-------S--DDRLIFTRREPVGIVGAITPFNFPLNLSAH 149 (486)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEC-------C--TTEEEEEEEEECSEEEEEECSSSHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceec-------C--CCceeEEEEccccEEEEECCCchHHHHHHH
Confidence 9999999999999999999999999999988887654321 1 145778999999999999999999999999
Q ss_pred hHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHc----CCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHHH
Q 011080 176 KIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLA----GFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGISI 250 (494)
Q Consensus 176 ~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~a----GlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~v 250 (494)
++++||++||+||+|||+.+|+++.+|++++.++ |+|+|++|+++|++.++++.|+.||+||.|+|||| .+|+.+
T Consensus 150 ~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~al~~~GlP~gvv~vv~g~~~~~g~~L~~~p~vd~V~fTGS~~~g~~i 229 (486)
T 3pqa_A 150 KIAPAIATGNVIVHHPSSKAPLVCIELAKIIENALKKYNVPLGVYNLLTGAGEVVGDEIVVNEKVNMISFTGSSKVGELI 229 (486)
T ss_dssp HHHHHHHTTCEEEEEECTTSCHHHHHHHHHHHHHHHHTTCCGGGEEECCSCTTTHHHHHHHCTTCCEEEEESCHHHHHHH
T ss_pred HHHHHHHcCCEEEEECCCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCchHHHHHHHhCCCccEEEEECChHHHHHH
Confidence 9999999999999999999999999999999999 99999999999988888999999999999999999 999999
Q ss_pred HHHcCCCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccccCCC-C
Q 011080 251 SKKAGMIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTVGAP-E 329 (494)
Q Consensus 251 ~~~a~~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~g~p-~ 329 (494)
.+.++++|+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||++++|+|+++|+++++++++||| +
T Consensus 230 ~~~aa~~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~g~p~~ 309 (486)
T 3pqa_A 230 TKKAGFKKIALELGGVNPNIVLKDADLNKAVNALIKGSFIYAGQVCISVGMILVDESIADKFIEMFVNKAKVLNVGNPLD 309 (486)
T ss_dssp HHHCCSSEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTSEEEEEEEGGGHHHHHHHHHHHHHTCCBSCTTS
T ss_pred HHHcCCCceeeccCCcCcEEEcCCCCHHHHHHHHHHHHHhcCCCCccCCcEEEEeHHHHHHHHHHHHHHHHhcccCCCCc
Confidence 998889999999999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHcCCEEeecccCCCceeecEEEeeCCCCCCCcccccccceeeeEecCCHHHHHHH
Q 011080 330 DDCDITPVVTESSANFIEGLVMDAKQKAATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHH 409 (494)
Q Consensus 330 ~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~~~~~~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~~~eai~~ 409 (494)
+++++||++++.+++++.+++++++++|+++..|+...|+|++|||+ +++++|++++||+||||++|++|+| ||||++
T Consensus 310 ~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~g~~~~Ptvl-~v~~~~~i~~eEiFGPVl~v~~~~~-deAi~~ 387 (486)
T 3pqa_A 310 EKTDVGPLISVEHAEWVEKVVEKAIDEGGKLLLGGKRDKALFYPTIL-EVDRDNILCKTETFAPVIPIIRTNE-EEMIDI 387 (486)
T ss_dssp TTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCEETTEECCEEE-ECCTTSGGGTCCCCSSEEEEEEECH-HHHHHH
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHHHHCCCEEEecCCCCCcEeccEEE-eCCCCChhhcccccccEEEEEEEcH-HHHHHH
Confidence 89999999999999999999999999999996555557899999999 9999999999999999999999999 999999
Q ss_pred HhcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCCCcchHHHHHHhhceeEEEEecCCC
Q 011080 410 CNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVINLPTP 489 (494)
Q Consensus 410 ~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~k~i~~~~~~~ 489 (494)
+|+++|||+++|||+|.++++++++++++|+|+||+++......+||||+|+||+|+++|.+|+++|++.|+|+++...+
T Consensus 388 aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~~PfGG~k~SG~Gr~~g~~gl~~f~~~k~v~~~~~~~ 467 (486)
T 3pqa_A 388 ANSTEYGLHSAIFTNDINKSLKFAENLEFGGVVINDSSLFRQDNMPFGGVKKSGLGREGVKYAMEEMSNIKTIIISKAEN 467 (486)
T ss_dssp HTCSSCCSEEEEECSBHHHHHHHHHHSCSSEEEESSCTTCCCTTSCBCCSGGGEESCBSHHHHHHHTEEEEEEEEEC---
T ss_pred HhcCCCCcEEEEECCCHHHHHHHHHhCCcceEEEeCCCCcCCCCCCCCCcCcCcCCCCCcHHHHHHhhceEEEEEcCCcc
Confidence 99999999999999999999999999999999999987643346999999999999999999999999999999986543
No 12
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A* 3rhl_A*
Probab=100.00 E-value=1.8e-102 Score=816.73 Aligned_cols=468 Identities=31% Similarity=0.465 Sum_probs=436.0
Q ss_pred ccceeCCeeeeCCCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhH--HhcCCCHHHHHHHHHHHHHHHHHcHH
Q 011080 14 YKFFYDGVWRKSSSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQK--SWAKTPLWKRAELLHKAAAILKEQKA 91 (494)
Q Consensus 14 ~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~--~w~~~~~~~R~~~L~~~a~~l~~~~~ 91 (494)
.++||||+|+.+.++..++++||+||+++++++.++.+|+++|+++|++||+ .|+.+|..+|.++|+++++.|+++++
T Consensus 37 ~~~~I~G~~~~~~~~~~~~v~nP~tg~~i~~v~~a~~~dv~~av~aA~~A~~~g~w~~~~~~~R~~~L~~~a~~l~~~~~ 116 (517)
T 2o2p_A 37 YQLFIGGEFVDAEGSKTYNTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADVMEQHQE 116 (517)
T ss_dssp CSEEETTEEECCGGGCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHHTSGGGTSCHHHHHHHHHHHHHHHHHTHH
T ss_pred CCeEECCEEecCCCCCeEEEECCCCCCEEEEEeCCCHHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHHHHHHhHH
Confidence 4689999999765667899999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHhCCChHHHH-HHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchH
Q 011080 92 PIAECLVKEIAKPAKDAV-TEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPV 170 (494)
Q Consensus 92 ~l~~~~~~e~Gk~~~~a~-~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~ 170 (494)
+|++++++|+|||+.+++ .|+..+++.+++++..++++.+...+ .. +........++.++|+|||++|+|||||+
T Consensus 117 ela~~~~~e~Gk~~~ea~~~Ev~~~~~~~~~~a~~~~~~~g~~~~--~~--~~~~~~~~~~~~~~P~GVV~~I~PwN~P~ 192 (517)
T 2o2p_A 117 ELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGATIP--IN--QARPNRNLTLTKKEPVGVCGIVIPWNYPL 192 (517)
T ss_dssp HHHHHHHHHHCCCHHHHHHTTTHHHHHHHHHHHHHGGGCCEEEEC--CC--CCTTSCEEEEEEEEECCEEEEECCSSSHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc--cc--ccCCCCceEEEEecCCccEEEECCCcchH
Confidence 999999999999999998 89999999999999988776654311 00 00011235789999999999999999999
Q ss_pred HHHHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHH
Q 011080 171 NLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGIS 249 (494)
Q Consensus 171 ~~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~ 249 (494)
.+.++++++||++||+||+|||+.+|+++.+|+++|.++|+|+|++|+|+|++.+++.+|++||+|+.|+|||| .+|+.
T Consensus 193 ~~~~~~~a~ALaaGNtVVlKps~~tp~ta~~l~~l~~eaGlP~gvv~vv~g~g~~~g~~L~~~~~v~~V~FTGS~~~G~~ 272 (517)
T 2o2p_A 193 MMLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNILPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKH 272 (517)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCTTCCHHHHHHHHHHHHTTCCTTSEEECCSCHHHHHHHHHHCTTCCEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEECCCccHHHHHHHHHHHHHhCCCcCeEEEEeCCCHHHHHHHHhCCCCCEEEEECCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999 99999
Q ss_pred HHHHcC---CCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccccC
Q 011080 250 ISKKAG---MIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTVG 326 (494)
Q Consensus 250 v~~~a~---~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~g 326 (494)
|.+.++ +||+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||+++||+|+++|+++++++++|
T Consensus 273 I~~~aa~~~lk~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~vG 352 (517)
T 2o2p_A 273 IMKSCALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEESIHNQFVQKVVEEVEKMKIG 352 (517)
T ss_dssp HHHHHHHHTCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHHHHHHHHHHHHHHTTCCBS
T ss_pred HHHHhHHhcCCeEEEECCCcCeEEECCCCCHHHHHHHHHHHHHhcCCCCCcCCeEEEEeHHHHHHHHHHHHHHHHhcCCC
Confidence 988764 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCCCCCccCCHHHHHHHHHHHHHHHHcCCEEeeccc---CCCceeecEEEeeCCCCCCCcccccccceeeeEecCC
Q 011080 327 AP-EDDCDITPVVTESSANFIEGLVMDAKQKAATFCQEYK---REGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINS 402 (494)
Q Consensus 327 ~p-~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~~~~~---~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~ 402 (494)
|| ++++++||++++.+++++.++|++++++|+++..|+. ..|+|++|||+.+++++|++++||+||||++|++|+|
T Consensus 353 dp~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~ 432 (517)
T 2o2p_A 353 NPLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFAD 432 (517)
T ss_dssp CTTSTTCCBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCSBCSSSSCCBCCEEEESCCTTSGGGTSCCCSSEEEEEEECT
T ss_pred CCCCCCCccCCCcCHHHHHHHHHHHHHHHHCCCEEEeccccCCCCCCeECCEEEeCCCCCChhhhccccccEEEEEEcCC
Confidence 99 8899999999999999999999999999999954432 2599999999999999999999999999999999999
Q ss_pred --HHHHHHHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCCCcchHHHHHHhhcee
Q 011080 403 --VEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIK 480 (494)
Q Consensus 403 --~~eai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~k 480 (494)
+||||+++|+++|||+++|||+|.++++++++++++|+|+||++.... ..+||||+|+||+|+++|.+|+++|++.|
T Consensus 433 ~~~deAi~~aN~~~~GL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~-~~~PfGG~k~SG~Gr~~G~~~l~~~~~~k 511 (517)
T 2o2p_A 433 GDVDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTD-VAAPFGGFKQSGFGKDLGEAALNEYLRIK 511 (517)
T ss_dssp TCSHHHHHHHTCSSCCSCCEEECSBHHHHHHHHHHCCSSEEEESCSSCCC-TTSCBCCCGGGEECCBSHHHHHHTTEEEE
T ss_pred CCHHHHHHHHhcCCCCceEEEeCCCHHHHHHHHHhcCEeEEEECCCCCCC-CCCCcCCcCcCCcCccChHHHHHHhCCce
Confidence 999999999999999999999999999999999999999999876544 45999999999999999999999999999
Q ss_pred EEEEec
Q 011080 481 STVINL 486 (494)
Q Consensus 481 ~i~~~~ 486 (494)
+|++++
T Consensus 512 ~v~~~~ 517 (517)
T 2o2p_A 512 TVTFEY 517 (517)
T ss_dssp EEEEEC
T ss_pred EEEeeC
Confidence 998763
No 13
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A*
Probab=100.00 E-value=4.1e-102 Score=813.02 Aligned_cols=469 Identities=29% Similarity=0.478 Sum_probs=439.3
Q ss_pred CcccceeCCeeeeCCCCCe-EEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcH
Q 011080 12 GVYKFFYDGVWRKSSSGKS-VTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQK 90 (494)
Q Consensus 12 ~~~~~~i~g~~~~~~~~~~-~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~ 90 (494)
..+++||||+|+.+.++.. ++++||+||+++++++.++.+|+++++++|++||+.|+.++..+|.++|+++++.|++++
T Consensus 18 ~~~~~~i~g~~~~~~~~~~~~~v~nP~tg~~i~~~~~~~~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~ 97 (503)
T 1a4s_A 18 TDDLNYWGGRRIKSKDGATTEPVFEPATGRVLCQMVPCGAEEVDQAVQSAQAAYLKWSKMAGIERSRVMLEAARIIRERR 97 (503)
T ss_dssp CSCCEEETTEEECCCTTCCCEEEECTTTCCEEEEECCCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTH
T ss_pred cccceeECCEEecCCCCCceEEEECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 3467899999998766677 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchH
Q 011080 91 APIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPV 170 (494)
Q Consensus 91 ~~l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~ 170 (494)
++|++++++|+|||+.+++.|+..+++.++++++.++++.++... .. .+...++.++|+|||++|+|||||+
T Consensus 98 ~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~~~~~~g~~~~-------~~-~~~~~~~~~~P~GVv~~I~PwN~P~ 169 (503)
T 1a4s_A 98 DNIAKLEVINNGKTITEAEYDIDAAWQCIEYYAGLAPTLSGQHIQ-------LP-GGAFAYTRREPLGVCAGILAWNYPF 169 (503)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHGGGCCEEEEE-------CG-GGCEEEEEEEECSEEEEECCSSSHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-------CC-CCceeEEEEecCceEEEECCCcchH
Confidence 999999999999999999999999999999999988876653211 00 1346788999999999999999999
Q ss_pred HHHHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHH
Q 011080 171 NLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGIS 249 (494)
Q Consensus 171 ~~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~ 249 (494)
.+.++++++||++||+||+|||+.+|+++.+|+++|.++|+|+|++|+|+|++ ++++.|+.||+|+.|+|||| .+|+.
T Consensus 170 ~~~~~~~a~ALaaGN~VVlKps~~tp~ta~~l~~l~~~aGlP~gvv~vv~g~~-~~g~~L~~~p~v~~V~FTGS~~~G~~ 248 (503)
T 1a4s_A 170 MIAAWKCAPALACGNAVVFKPSPMTPVTGVILAEIFHEAGVPVGLVNVVQGGA-ETGSLLCHHPNVAKVSFTGSVPTGKK 248 (503)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHTTCCTTSEEECCCSH-HHHHHHHHCTTCCEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHhCCCcCeEEEEecCc-hHHHHHHhCCCcCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999977 89999999999999999999 99999
Q ss_pred HHHHc--CCCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccccCC
Q 011080 250 ISKKA--GMIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTVGA 327 (494)
Q Consensus 250 v~~~a--~~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~g~ 327 (494)
|.+.+ .+||+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||++++|+|+++|+++++++++||
T Consensus 249 i~~~aa~~~~~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~ 328 (503)
T 1a4s_A 249 VMEMSAKTVKHVTLELGGKSPLLIFKDCELENAVRGALMANFLTQGQVCTNGTRVFVQREIMPQFLEEVVKRTKAIVVGD 328 (503)
T ss_dssp HHHHHHTTTCEEEEECCCCCEEEECTTSCHHHHHHHHHHTTCGGGGCCTTCCCEEEEEGGGHHHHHHHHHHHHHTCCBSC
T ss_pred HHHHhhhcCCceEEecCCcCeEEECCCCCHHHHHHHHHHHHHhcCCCCCcCCcEEEEehHHHHHHHHHHHHHHHhcCCCC
Confidence 99877 4899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCCCCccCCHHHHHHHHHHHHHHHHcCCEEe-eccc--------CCCceeecEEEeeCCCCCCCcccccccceeee
Q 011080 328 P-EDDCDITPVVTESSANFIEGLVMDAKQKAATFC-QEYK--------REGNLIWPLLLDNVRPDMRIAWEEPFGPVLPV 397 (494)
Q Consensus 328 p-~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~-~~~~--------~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v 397 (494)
| ++++++||++++.+.+++.+++++++++|+++. +|.. ..|+|++|||+.+++++|++++||+||||++|
T Consensus 329 p~~~~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v 408 (503)
T 1a4s_A 329 PLLTETRMGGLISKPQLDKVLGFVAQAKKEGARVLCGGEPLTPSDPKLKNGYFMSPCVLDNCRDDMTCVKEEIFGPVMSV 408 (503)
T ss_dssp TTSTTCCBCCCSCHHHHHHHHHHHHHHHHHTCEEEECCSBCCCSSGGGTTSCCBCCEEEESCCTTSHHHHSCCCSSEEEE
T ss_pred CcccCCccCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCcccccccccccCCceeCCEEEecCCCCCHHHhccccCceEEE
Confidence 9 889999999999999999999999999999985 4432 25899999999999999999999999999999
Q ss_pred EecCCHHHHHHHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCCCcchHHHHHHhh
Q 011080 398 IRINSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMT 477 (494)
Q Consensus 398 ~~~~~~~eai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~ 477 (494)
++|+|+||||+++|+++|||+++|||+|.++++++++++++|+|+||++.... ..+||||+|+||+|+++|.+|+++|+
T Consensus 409 ~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~-~~~PfGG~k~SG~G~~~G~~~l~~f~ 487 (503)
T 1a4s_A 409 LPFDTEEEVLQRANNTTFGLASGVFTRDISRAHRVAANLEAGTCYINTYSISP-VEVPFGGYKMSGFGRENGQATVDYYS 487 (503)
T ss_dssp EEECCHHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCSSEEEESCCCCCC-TTSCBCCSGGGEECCBSTTGGGGGSE
T ss_pred EecCCHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHCceeEEEECCCCCCC-CCCCCCCcCCCCCCccchHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999977644 45899999999999999999999999
Q ss_pred ceeEEEEecCCCC
Q 011080 478 KIKSTVINLPTPS 490 (494)
Q Consensus 478 ~~k~i~~~~~~~~ 490 (494)
+.|+|++++++..
T Consensus 488 ~~k~v~~~~~~~~ 500 (503)
T 1a4s_A 488 QLKTVIVEMGDVD 500 (503)
T ss_dssp EEEEEEECCSCCC
T ss_pred CceEEEEccCCCC
Confidence 9999999876543
No 14
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=100.00 E-value=5.8e-102 Score=813.56 Aligned_cols=469 Identities=29% Similarity=0.424 Sum_probs=437.6
Q ss_pred cccceeCCeeeeCCCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHHH
Q 011080 13 VYKFFYDGVWRKSSSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKAP 92 (494)
Q Consensus 13 ~~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~ 92 (494)
.+++||||+|+.+.++..++++||+||+++++++.++.+++++++++|++||+.|+.++..+|.++|+++++.|++++++
T Consensus 26 ~~~~~I~G~~~~~~~~~~~~v~nP~tg~~i~~~~~~~~~dv~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~e 105 (521)
T 4e4g_A 26 ELGHFIDGKRVAGTSGRVSNIFNPATGEVQGTVALASDADLAAAVESAKAAQPKWAATNPQRRARVFMKFVQLLNDNMNE 105 (521)
T ss_dssp EECEEETTEEECCSSSCEEEEEETTTTEEEEEEECCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCeeECCEEecCCCCCEEEEECCCCCCEEEEEcCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999877788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchHHH
Q 011080 93 IAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNL 172 (494)
Q Consensus 93 l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~~~ 172 (494)
|++++++|+|||+.+++.|+..+++.+++++.......+..... ...+...++.++|+|||++|+|||||+.+
T Consensus 106 la~~~~~e~Gk~~~ea~~Ev~~~~~~l~~~a~~~~~~~~~~~~~-------~~~~~~~~~~~~P~GVV~~I~PwN~P~~~ 178 (521)
T 4e4g_A 106 LAEMLSREHGKTIDDAKGDIVRGLEVCEFVIGIPHLQKSEFTEG-------AGPGIDMYSIRQPVGIGAGITPFNFPGMI 178 (521)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHTHHHHTCEEEEEE-------EETTEEEEEEEEECCEEEEECCSSCTTHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc-------CCCCcceeEEEcCCcEEEEECCCcchHHH
Confidence 99999999999999999999999999999987665544332110 01245678999999999999999999999
Q ss_pred HHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHHHH
Q 011080 173 AVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGISIS 251 (494)
Q Consensus 173 ~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~v~ 251 (494)
.++++++||++||+||+|||+.+|+++.+|++++.++|+|+|++|+++|+ .+.+..|+.||+||.|+|||| .+|+.|.
T Consensus 179 ~~~~~a~ALaaGN~VVlKpse~tp~t~~~l~~l~~eaGlP~gvv~vv~g~-~~~~~~L~~~p~vd~I~FTGS~~vG~~i~ 257 (521)
T 4e4g_A 179 PMWMFAPAIACGNAFILKPSERDPSVPIRLAELMIEAGLPAGILNVVNGD-KGAVDAILTHPDIAAVSFVGSTPIARYVY 257 (521)
T ss_dssp HHHHHHHHHHTTCEEEEECCTTSTHHHHHHHHHHHHTTCCTTSEEECCCC-HHHHHHHHTCTTCCEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHhCCCcCeEEEEeCC-hHHHHHHHhCCCcCEEEEECCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999994 566799999999999999999 9999999
Q ss_pred HHc--CCCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccc-hHHHHHHHHHHHHhccccCCC
Q 011080 252 KKA--GMIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMES-VADTLVEKVKAKVAKLTVGAP 328 (494)
Q Consensus 252 ~~a--~~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~-~~~~f~~~l~~~~~~~~~g~p 328 (494)
+.+ .++|+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||++ ++|+|+++|+++++++++|+|
T Consensus 258 ~~aa~~lkpv~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~~i~d~f~~~l~~~~~~~~vG~~ 337 (521)
T 4e4g_A 258 GTAAMNGKRAQCFGGAKNHMIIMPDADLDQAANALIGAGYGSAGERCMAISVAVPVGEETANRLIDKLVPMVESLRIGPY 337 (521)
T ss_dssp HHHHHTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTSEEEEEEBSHHHHHHHHHHHHHHHHTCCBCCT
T ss_pred HHHhhcCCCeeecCCCCCeEEEcCCCCHHHHHHHHHHHHHhCCCCCcccCeEEEEeCchHHHHHHHHHHHHHHhccCCCC
Confidence 876 58999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred -CCCCCCCccCCHHHHHHHHHHHHHHHHcCCEEe-eccc------CCCceeecEEEeeCCCCCCCcccccccceeeeEec
Q 011080 329 -EDDCDITPVVTESSANFIEGLVMDAKQKAATFC-QEYK------REGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRI 400 (494)
Q Consensus 329 -~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~-~~~~------~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~ 400 (494)
++++++||++++.+++++.++|++++++|+++. +|.. .+|+|++|||+.+++++|++++||+||||++|++|
T Consensus 338 ~~~~~~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~ 417 (521)
T 4e4g_A 338 TDEKADMGPVVTKEAEQRIRSLIDSGIEQGAKLVVDGRDFKLQGYENGHFIGGCLFDDVTPDMDIYKTEIFGPVLSVVRA 417 (521)
T ss_dssp TCTTCSBCCCSCHHHHHHHHHHHHHHHHHTCEEEECCSSCCCTTCTTSCCCCCEEEESCCTTSHHHHSCCCSSEEEECCB
T ss_pred CCccCccCCCCCHHHHHHHHHHHHHHHHCCCEEEecCcccCCCcCCCCcEECCEEEEcCCCCCHhhcCcccCcEEEEEEe
Confidence 889999999999999999999999999999995 4421 46899999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCC--CcchHHHHHHhhc
Q 011080 401 NSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIG--SQGITNSINMMTK 478 (494)
Q Consensus 401 ~~~~eai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g--~~~g~~~l~~~~~ 478 (494)
+|+||||+++|+++|||+++|||+|.++++++++++++|+|+||++.......+||||+|.||+| +++|++|+++|++
T Consensus 418 ~~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~~PfGG~k~SG~G~~~~~G~~gl~~ft~ 497 (521)
T 4e4g_A 418 RNYEEALSLPMKHEYGNGVAIYTRDGDAARDFASRINIGMVGVNVPIPVPLAYHSFGGWKSSSFGDLNQHGTDSIKFWTR 497 (521)
T ss_dssp SSHHHHHHHHHHSSEESEEEEECSBHHHHHHHHHHCCCSEEEESCSSCCCCTTSCBCCEETTEESSCCBSHHHHHHHTEE
T ss_pred CCHHHHHHHHhcCCCCeEEEEECCCHHHHHHHHHhCCeeeEEECCCCCCCCCCCCcCCcccCCCCCCccchHHHHHHhhe
Confidence 99999999999999999999999999999999999999999999886544456899999999999 7999999999999
Q ss_pred eeEEEEecCCC
Q 011080 479 IKSTVINLPTP 489 (494)
Q Consensus 479 ~k~i~~~~~~~ 489 (494)
.|+|+++++..
T Consensus 498 ~K~v~~~~~~~ 508 (521)
T 4e4g_A 498 TKTITSRWPSG 508 (521)
T ss_dssp EEEEEECCCCC
T ss_pred EEEEEEecCcc
Confidence 99999987644
No 15
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Probab=100.00 E-value=3e-102 Score=814.97 Aligned_cols=464 Identities=29% Similarity=0.481 Sum_probs=436.1
Q ss_pred CcccceeCCeeeeCCCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHH
Q 011080 12 GVYKFFYDGVWRKSSSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKA 91 (494)
Q Consensus 12 ~~~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ 91 (494)
..+++||||+|+.+.++..++++||+||+++++++.++.+++++++++|++||+.|+.++..+|.++|+++++.|+++++
T Consensus 13 ~~~~~~I~G~~~~~~~~~~~~v~nP~tg~~i~~~~~~~~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ 92 (517)
T 3r31_A 13 PKASHFIDGDYVEDNTGTPFESIFPATGEMIAKLHAATPAIVERAIASAKRAQKEWAAMSPMARGRILKRAADIMRERND 92 (517)
T ss_dssp CSSSEEETTEEECCTTSCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHH
T ss_pred cccCeeECCEEecCCCCCEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999987778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhHH----HhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCC
Q 011080 92 PIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVR----ILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFN 167 (494)
Q Consensus 92 ~l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n 167 (494)
+|++++++|+|||..++ |+..+++.+++++..+.+ ..+...+ . ..+. .++.++|+|||++|+|||
T Consensus 93 ela~~~~~e~Gk~~~ea--ev~~~~~~~~~~a~~~~~~~~~~~g~~~~-------~-~~~~-~~~~~~P~GVV~~I~PwN 161 (517)
T 3r31_A 93 ALSTLETLDTGKPIQET--IVADPTSGADAFEFFGGIAPSALNGDYIP-------L-GGDF-AYTKRVPLGVCVGIGAWN 161 (517)
T ss_dssp HHHHHHHHHHCCCHHHH--HHHSHHHHHHHHHHHHHHHHHHTCCCEEE-------C-SSSE-EEEEEEECSEEEEECCSS
T ss_pred HHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHhhhccccccCcccc-------c-CCCc-ceEEEcCccEEEEECCCc
Confidence 99999999999999999 999999999999988776 3333211 1 1234 889999999999999999
Q ss_pred chHHHHHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HH
Q 011080 168 YPVNLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DT 246 (494)
Q Consensus 168 ~P~~~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~ 246 (494)
||+.+.++++++||++||+||+|||+.+|+++.+|+++|.++|+|+|++|+|+| +.++++.|++||+||.|+|||| .+
T Consensus 162 ~P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~ll~eaGlP~gvv~vv~g-~~~~g~~L~~~p~vd~I~FTGS~~~ 240 (517)
T 3r31_A 162 YPQQIACWKAAPALVAGNAMVFKPSENTPLGALKIAEILIEAGLPKGLFNVIQG-DRDTGPLLVNHPDVAKVSLTGSVPT 240 (517)
T ss_dssp SHHHHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHTTCCTTSEEECCC-CTTHHHHHHTCTTEEEEEEESCHHH
T ss_pred chHHHHHHHHHHHHHcCCEEEEEcCcccHHHHHHHHHHHHHhCcCcccEEEEEC-CHHHHHHHHhCCCcCEEeccCCHHH
Confidence 999999999999999999999999999999999999999999999999999999 7889999999999999999999 99
Q ss_pred HHHHHHHc--CCCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccc
Q 011080 247 GISISKKA--GMIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLT 324 (494)
Q Consensus 247 ~~~v~~~a--~~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~ 324 (494)
|+.|.+.+ .++|+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||++++|+|+++|++++++++
T Consensus 241 G~~i~~~aa~~lk~v~lElGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~ 320 (517)
T 3r31_A 241 GRKVAAAAAGHLKHVTMELGGKSPMIVFDDADIESAVGGAMLGNFYSSGQVCSNGTRVFVQKKAKARFLENLKRRTEAMI 320 (517)
T ss_dssp HHHHHHHHHHTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHTSCCHHHHTTCEEEEEEGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhhcCCCcEEEEcCCcCeEEEecCCCHHHHHHHHHHHHhcCCCceeccCceEEEeHHHHHHHHHHHHHHHHhcc
Confidence 99999887 5899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC-CCCCCCCccCCHHHHHHHHHHHHHHHHcCCEEeeccc------CCCceeecEEEeeCCCCCCCcccccccceeee
Q 011080 325 VGAP-EDDCDITPVVTESSANFIEGLVMDAKQKAATFCQEYK------REGNLIWPLLLDNVRPDMRIAWEEPFGPVLPV 397 (494)
Q Consensus 325 ~g~p-~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~~~~~------~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v 397 (494)
+||| ++++++||++++.+++++.++|++++++|+++..|+. .+|+|++|||+.+++++|++++||+||||++|
T Consensus 321 ~G~p~~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v 400 (517)
T 3r31_A 321 LGDPLDYATHLGPLVSKAQQEKVLSYIEKGKAEGATLITGGGIPNNVAGEGAYVQPTVFADVTDDMTIAREEIFGPVMCV 400 (517)
T ss_dssp BCCTTSTTCSBCCBSCHHHHHHHHHHHHHHHHHTCEEEECCSCCSSCCSSSBCCCCEEEEEECTTSHHHHSCCSSSEEEE
T ss_pred CCCCCCcCCcccCCcCHHHHHHHHHHHHHHHhCCCEEEECCccCcccCCCCceECCEEEecCCCCCccccceeeccEEEE
Confidence 9999 8899999999999999999999999999999953333 26899999999999999999999999999999
Q ss_pred EecCCHHHHHHHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCCCcchHHHHHHhh
Q 011080 398 IRINSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMT 477 (494)
Q Consensus 398 ~~~~~~~eai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~ 477 (494)
++|+|+||||+++|+++|||+++|||+|.++++++++++++|+|+||+.+... ..+||||+|+||+|+++|++|+++|+
T Consensus 401 ~~~~~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~-~~~PfGG~k~SG~Gr~~G~~gl~~ft 479 (517)
T 3r31_A 401 LDFDDEDEVLARANATEFGLAGGVFTADLARAHRVVDGLEAGTLWINTYNLCP-VEIPFGGSKQSGFGRENSAAALEHYS 479 (517)
T ss_dssp EEECCHHHHHHHHHCSSEESEEEEECSCHHHHHHHHHHSCCSEEEESSCCCCC-TTSCBCCEETTEECCBSTGGGGGGSE
T ss_pred EEeCCHHHHHHHHhCCCCCeeEEEEeCCHHHHHHHHHHCCcceEEECCCCCCC-CCCCcCCcCcCCCCcCchHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999976544 55999999999999999999999999
Q ss_pred ceeEEEEecCC
Q 011080 478 KIKSTVINLPT 488 (494)
Q Consensus 478 ~~k~i~~~~~~ 488 (494)
+.|+|+++...
T Consensus 480 ~~K~v~~~~~~ 490 (517)
T 3r31_A 480 ELKTVYVSTGK 490 (517)
T ss_dssp EEEEEEECCC-
T ss_pred ceEEEEEcCCC
Confidence 99999988654
No 16
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP binding, oxidoreductase; HET: NAP; 2.30A {Escherichia coli}
Probab=100.00 E-value=2e-101 Score=805.77 Aligned_cols=465 Identities=29% Similarity=0.526 Sum_probs=437.8
Q ss_pred cccceeCCeeeeCCCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHHH
Q 011080 13 VYKFFYDGVWRKSSSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKAP 92 (494)
Q Consensus 13 ~~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~ 92 (494)
..++||||+|+.+.++..++++||+||+++++++.++.+++++++++|++|++.|+.++.++|.++|+++++.|++++++
T Consensus 9 ~~~~~i~g~~~~~~~~~~~~~~~P~t~~~i~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~ 88 (481)
T 3jz4_A 9 RQQALINGEWLDANNGEAIDVTNPANGDKLGSVPKMGADETRAAIDAANRALPAWRALTAKERATILRNWFNLMMEHQDD 88 (481)
T ss_dssp CCSEEETTEEECCTTCCEEEEECTTTCCEEEEEECBCHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHH
T ss_pred ccceeECCEEecCCCCCeEEeECCCCCCEEEEEcCCCHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999877788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchHHH
Q 011080 93 IAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNL 172 (494)
Q Consensus 93 l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~~~ 172 (494)
|++++++|+|||..+++.|+..+++.+++++....+..+... +....+...++.++|+|||++|+|||||+.+
T Consensus 89 la~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~ 161 (481)
T 3jz4_A 89 LARLMTLEQGKPLAEAKGEISYAASFIEWFAEEGKRIYGDTI-------PGHQADKRLIVIKQPIGVTAAITPWNFPAAM 161 (481)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHGGGCCEEEE-------CCSSTTEEEEEEEEECCEEEEECCSSSTTHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-------cccCCCceEEEEEcCccEEEEECCCcchHHH
Confidence 999999999999999999999999999999887766544321 1112356778999999999999999999999
Q ss_pred HHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHHHH
Q 011080 173 AVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGISIS 251 (494)
Q Consensus 173 ~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~v~ 251 (494)
.++++++||++||+||+|||+.+|+++.+|++++.++|+|+|++|+++|++.++++.|++||+|+.|+|||| .+|+.|.
T Consensus 162 ~~~~~~~ALaaGN~VVlKps~~tp~~~~~l~~l~~~aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~I~fTGS~~~g~~i~ 241 (481)
T 3jz4_A 162 ITRKAGPALAAGCTMVLKPASQTPFSALALAELAIRAGVPAGVFNVVTGSAGAVGNELTSNPLVRKLSFTGSTEIGRQLM 241 (481)
T ss_dssp HHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHTCCTTTEEECCBCTHHHHHHHHHCTTEEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHhCcCCCeEEEEeCCChHHHHHHHhCCCcCEEEEECCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988889999999999999999999 9999999
Q ss_pred HHc--CCCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccccCCC-
Q 011080 252 KKA--GMIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTVGAP- 328 (494)
Q Consensus 252 ~~a--~~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~g~p- 328 (494)
+.+ +++|+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||++++|+|+++|+++++++++|||
T Consensus 242 ~~aa~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~ 321 (481)
T 3jz4_A 242 EQCAKDIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDGVYDRFAEKLQQAMSKLHIGDGL 321 (481)
T ss_dssp HHHTTTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTSEEEEEEEGGGHHHHHHHHHHHHTTCCBSCTT
T ss_pred HHHhhcCCceEEecCCCCeEEEcCCCCHHHHHHHHHHHHHHhCCCcccCCcEEEEeHHHHHHHHHHHHHHHHhccCCCCc
Confidence 887 47999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHHHHHcCCEEeecc---cCCCceeecEEEeeCCCCCCCcccccccceeeeEecCCHHH
Q 011080 329 EDDCDITPVVTESSANFIEGLVMDAKQKAATFCQEY---KREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEE 405 (494)
Q Consensus 329 ~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~~~~---~~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~~~e 405 (494)
++++++||++++.+++++.+++++++++|+++..++ ...|+|++|||+.+++++|++++||+||||++|++|+|+||
T Consensus 322 ~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~de 401 (481)
T 3jz4_A 322 DNGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAHERGGNFFQPTILVDVPANAKVSKEETFGPLAPLFRFKDEAD 401 (481)
T ss_dssp STTCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCTTCTTCBCCEEEESCCTTSGGGTSCCCSSEEEEEEECCHHH
T ss_pred cCcCccccccCHHHHHHHHHHHHHHHHCCCEEEeCCcccCCCCceeccEEEecCCCCcccccccccCceEEEEEECCHHH
Confidence 889999999999999999999999999999995443 23579999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCCCcchHHHHHHhhceeEEEEe
Q 011080 406 GIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVIN 485 (494)
Q Consensus 406 ai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~k~i~~~ 485 (494)
||+++|+++|||+++|||+|.++++++++++++|+|+||++.... ..+||||+|+||+|+++|.+|+++|++.|+|++.
T Consensus 402 Ai~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~-~~~PfGG~k~SG~G~~~g~~g~~~~t~~k~v~~~ 480 (481)
T 3jz4_A 402 VIAQANDTEFGLAAYFYARDLSRVFRVGEALEYGIVGINTGIISN-EVAPFGGIKASGLGREGSKYGIEDYLEIKYMCIG 480 (481)
T ss_dssp HHHHHHCSSCCSEEEEECCBHHHHHHHHHHCCCSEEEESCSCCCC-SSSCBCCSGGGEESCBSHHHHHHTTEEEEEEEEE
T ss_pred HHHHHhcCCCCceEEEECCCHHHHHHHHHhCCeeeEEECCCCCCC-CCCCcCCcccCcCCCCchHHHHHHhhceeEEEEe
Confidence 999999999999999999999999999999999999999977644 4599999999999999999999999999999875
No 17
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics, protein structure initiative, nysgrc, P biology; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=8.4e-102 Score=810.03 Aligned_cols=477 Identities=28% Similarity=0.447 Sum_probs=419.5
Q ss_pred CCcccceeCCeeeeCCCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcH
Q 011080 11 NGVYKFFYDGVWRKSSSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQK 90 (494)
Q Consensus 11 ~~~~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~ 90 (494)
...+++||||+|+.+.++..++++||+||+++++++.++.+++++++++|++||+.|+.++..+|.++|+++++.|++++
T Consensus 4 ~~~~~~~i~g~~~~~~~~~~~~~~~P~t~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~ 83 (485)
T 4dng_A 4 ETLNKSFINGKWTGGESGRTEDILNPYDQSVITTASLATGKQLEDAFDIAQKAQKEWAKSTTEDRKAVLQKARGYLHENR 83 (485)
T ss_dssp GGCCSEEETTEEECCSSSCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTH
T ss_pred ccccceeECCEEecCCCCCeEEeECCCCCCEEEEEcCCCHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHH
Confidence 34678999999998777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchH
Q 011080 91 APIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPV 170 (494)
Q Consensus 91 ~~l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~ 170 (494)
++|++++++|+|||+.+++.|+..+++.+++++....+..+..... . ...+...++.++|+|||++|+|||||+
T Consensus 84 ~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~-----~-~~~~~~~~~~~~P~GVv~~I~PwN~P~ 157 (485)
T 4dng_A 84 DDIIMMIARETGGTIIKSTIELEQTIAILDEAMTYTGELGGVKEVP-----S-DIEGKTNKIYRLPLGVISSISPFNFPM 157 (485)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHGGGCSCEECCC-----C-SSTTEEEEEEEEECCEEEEECCSSSHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeccc-----c-CCCCceEEEEEecceEEEEECCCccHH
Confidence 9999999999999999999999999999999998876544332110 0 122467889999999999999999999
Q ss_pred HHHHhhHHHHhhcCCEEEEcCCCCChHHH-HHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHH
Q 011080 171 NLAVSKIAPALIAGNSIVLKPPTQGAVAA-LHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGI 248 (494)
Q Consensus 171 ~~~~~~~~~aL~aGN~vvlkps~~~~~t~-~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~ 248 (494)
.+.++++++||++||+||+|||+.+|+++ .+|.++|.++|+|+|++|+++|++.++++.|++||+++.|+|||| .+|+
T Consensus 158 ~~~~~~~~~ALaaGN~VVlKps~~tp~~~~~~l~~~l~~aGlP~gvv~vv~g~~~~~~~~L~~~p~v~~v~fTGS~~~g~ 237 (485)
T 4dng_A 158 NLSMRSIAPAIALGNSVVHKPDIQTAISGGTIIAKAFEHAGLPAGVLNVMLTDVKEIGDGMLTNPIPRLISFTGSTAVGR 237 (485)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCGGGHHHHTHHHHHHHHHTTCCTTSEEECCCCHHHHTTHHHHCSSCSEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHHhCcCCCeEEEEeCCChhHHHHHHhCCCCCEEEEECCcHHHH
Confidence 99999999999999999999999999999 999999999999999999999987789999999999999999999 9999
Q ss_pred HHHHHc--CCCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccccC
Q 011080 249 SISKKA--GMIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTVG 326 (494)
Q Consensus 249 ~v~~~a--~~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~g 326 (494)
.+.+.+ +++|+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||++++|+|+++|+++++++++|
T Consensus 238 ~i~~~aa~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~~~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~g 317 (485)
T 4dng_A 238 HIGEIAGRAFKRMALELGGNNPFAVLSDADVDRAVDAAIFGKFIHQGQICMIINRIIVHQDVYDEFVEKFTARVKQLPYG 317 (485)
T ss_dssp HHHHHHHHHTCEEEEEECCCEEEEECTTSCHHHHHHHHHHHHTTCC----CCEEEEEEEHHHHHHHHHHHHHHHHHCCBS
T ss_pred HHHHHHhhhccchhhhcCCCCceEEcCCCCHHHHHHHHHHHHHhcCCCccccCCEEEEeHHHHHHHHHHHHHHHHhccCC
Confidence 999877 489999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCCCCCccCCHHHHHHHHHHHHHHHHcCCEEeecccCCCceeecEEEeeCCCCCCCcccccccceeeeEecCCHHH
Q 011080 327 AP-EDDCDITPVVTESSANFIEGLVMDAKQKAATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEE 405 (494)
Q Consensus 327 ~p-~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~~~~~~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~~~e 405 (494)
+| ++++++||++++.+.+++.+++++++++|+++..++...|+|++|||+.+++++|++++||+||||++|++|+|+||
T Consensus 318 ~~~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~~g~~~~Ptvl~~v~~~~~i~~eE~FGPvl~v~~~~~~~e 397 (485)
T 4dng_A 318 DQTDPKTVVGPLINERQIEKALEIIEQAKTDGIELAVEGKRVGNVLTPYVFVGADNNSKIAQTELFAPIATIIKAGSDQE 397 (485)
T ss_dssp CTTSTTCSBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCEETTEECCEEEESCCTTSHHHHCCCCSSEEEEEEESSHHH
T ss_pred CCCcCCCccCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCCCCcEECCEEEecCCCCChhhcCccccceEEEEEeCCHHH
Confidence 99 78999999999999999999999999999999655555799999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCCCcchHHHHHHhhceeEEEEe
Q 011080 406 GIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVIN 485 (494)
Q Consensus 406 ai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~k~i~~~ 485 (494)
||+++|+++|||+++|||+|.++++++++++++|+|+||+++......+||||+|.||+|+++|.+|+++|++.|+|+++
T Consensus 398 Ai~~an~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~vN~~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~t~~k~v~~~ 477 (485)
T 4dng_A 398 AIDMANDTEYGLSSAVFTSDLEKGEKFALQIDSGMTHVNDQSVNDSPNIAFGGNKASGVGRFGNPWVVEEFTVTKWISIQ 477 (485)
T ss_dssp HHHHHHCSSCCSEEEEECSCHHHHHHHHTTSCSSEEEESCC----------------------CHHHHHHHEEEEEEEEE
T ss_pred HHHHHhCCCCCceEEEECCCHHHHHHHHHhcCcceEEECCCCCCCCCCCCcCCcCCCCCCccchHHHHHHhhceEEEEEe
Confidence 99999999999999999999999999999999999999998765445699999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 011080 486 LPTPSYTV 493 (494)
Q Consensus 486 ~~~~~~~~ 493 (494)
+....+||
T Consensus 478 ~~~~~~~~ 485 (485)
T 4dng_A 478 KQYRKYPF 485 (485)
T ss_dssp C-------
T ss_pred cCCcCCCC
Confidence 87766664
No 18
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC; HET: NAD; 2.10A {Thermus thermophilus}
Probab=100.00 E-value=2.2e-101 Score=809.80 Aligned_cols=468 Identities=29% Similarity=0.463 Sum_probs=437.9
Q ss_pred cccceeCCeeeeCCCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHHH
Q 011080 13 VYKFFYDGVWRKSSSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKAP 92 (494)
Q Consensus 13 ~~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~ 92 (494)
..++||||+|+.+.++..++++||+||+++++++.++.+|+++++++|++||+.|+.++..+|.++|+++++.|++++++
T Consensus 26 ~~~~~i~G~~~~~~~~~~~~~~nP~tg~~i~~~~~~~~~dv~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~e 105 (515)
T 2d4e_A 26 PALHFIAGEFVPSESGETFPSLDPATNEVLGVAARGGEREVDRAAKAAHEAFQRWSRTKAKERKRYLLRIAELIEKHADE 105 (515)
T ss_dssp CBCEEETTEEECCTTCCEEEEEETTTTEEEEEEECCCHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHH
T ss_pred ccCeeECCEEecCCCCCeEEEECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999876678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchHHH
Q 011080 93 IAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNL 172 (494)
Q Consensus 93 l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~~~ 172 (494)
|++++++|+|||+.+++.|+..+++.++++++.++++.+... +....+...++.++|+|||++|+|||||+.+
T Consensus 106 la~~~~~e~Gk~~~ea~~ev~~~~~~l~~~a~~~~~~~g~~~-------~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~ 178 (515)
T 2d4e_A 106 LAVMECLDAGQVLRIVRAQVARAAENFAFYAEYAEHAMEDRT-------FPVDRDWLYYTVRVPAGPVGIITPWNAPLML 178 (515)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHTTGGGTTCEEE-------CCBTTTEEEEEEEEECCCEEEECCSSSHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-------ccCCCCceeEEEEecCCceEEECCCCchhhh
Confidence 999999999999999999999999999999988777665421 1101245678899999999999999999999
Q ss_pred HHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHHHH
Q 011080 173 AVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGISIS 251 (494)
Q Consensus 173 ~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~v~ 251 (494)
.++++++||++||+||+|||+.+|+++.+|+++|.++|+|+|++|+|+|++.++++.|+.||+||.|+|||| .+|+.|.
T Consensus 179 ~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~eaGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~I~ 258 (515)
T 2d4e_A 179 STWRIAPALAFGNTVVLKPAEWSPFTATKLAEILKEADLPPGVFNLVQGFGEEAGAALVAHPLVPLLTLTGETETGKIVM 258 (515)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHTTCCTTSEEECCCCTTTHHHHHHHCTTCCEEEEESCHHHHHHHH
T ss_pred hhhhhhHHHHcCCeeeecCCCCcHHHHHHHHHHHHHhCCCcCeEEEEeCCchHHHHHHHhCCCcCEEEEeCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999977789999999999999999999 9999999
Q ss_pred HHcC--CCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccccCCC-
Q 011080 252 KKAG--MIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTVGAP- 328 (494)
Q Consensus 252 ~~a~--~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~g~p- 328 (494)
+.++ ++|+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||++++|+|+++|+++++++++|||
T Consensus 259 ~~aa~~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~g~p~ 338 (515)
T 2d4e_A 259 RNAADHLKRLSPELGGKSPALVFADADLERALDAVVFQIFSFNGERCTASSRLLVEEKIFEDFVGKVVERARAIRVGHPL 338 (515)
T ss_dssp HHHGGGTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCCCEEEEEHHHHHHHHHHHHHHHHHCCBCCTT
T ss_pred HHHhhcCCceEecCCCcCeEEEcCCCCHHHHHHHHHHHHHhcCCCCCCCCeEEEEehhHHHHHHHHHHHHHhhcccCCcc
Confidence 8874 7999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHHHHHcCCEEe-eccc-C---------CCceeecEEEeeCCCCCCCcccccccceeee
Q 011080 329 EDDCDITPVVTESSANFIEGLVMDAKQKAATFC-QEYK-R---------EGNLIWPLLLDNVRPDMRIAWEEPFGPVLPV 397 (494)
Q Consensus 329 ~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~-~~~~-~---------~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v 397 (494)
++++++||++++.+++++.++|++++++|+++. +|.. . .|+|++|||+.+ +++|++++||+||||++|
T Consensus 339 ~~~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~~~~~~~~~g~~~~PTvl~~-~~~~~i~~eEiFGPVl~v 417 (515)
T 2d4e_A 339 DPETEVGPLIHPEHLQRVLGYVEAGKREGARLLVGGERAKTSFRGEDLSRGNYLLPTVFVG-ENHMKIAQEEIFGPVLVA 417 (515)
T ss_dssp STTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCCBCTTSCBCTTTTCBCCEEEEC-CTTSHHHHSCCCSSEEEE
T ss_pred cccCccCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCccccccccccccCCCceeCCEEEeC-CCCChhhhccccCCceEE
Confidence 789999999999999999999999999999995 4432 1 589999999999 999999999999999999
Q ss_pred EecCCHHHHHHHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCCCcchHHHHHHhh
Q 011080 398 IRINSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMT 477 (494)
Q Consensus 398 ~~~~~~~eai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~ 477 (494)
++|+|+||||+++|+++|||+++|||+|.++++++++++++|+|+||+++... ..+||||+|+||+|+++|.+|+++|+
T Consensus 418 ~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~-~~~PfGG~k~SG~Gr~~G~~gl~~~~ 496 (515)
T 2d4e_A 418 IPFKDEEEALRKANDTKYGLAAYVFTRDLERAHRLALELEAGMVYLNSHNVRH-LPTPFGGVKGSGDRREGGTYALDFYT 496 (515)
T ss_dssp EEESSHHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCSSEEEESSSCCCC-TTSCBCCSGGGBCSCBSHHHHHHHHE
T ss_pred EeeCCHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHhCCeeEEEECCCCCCC-CCCCCCCcCCCCCCccchHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999876543 45999999999999999999999999
Q ss_pred ceeEEEEecCCC
Q 011080 478 KIKSTVINLPTP 489 (494)
Q Consensus 478 ~~k~i~~~~~~~ 489 (494)
+.|+|+++++.+
T Consensus 497 ~~K~v~~~~~~~ 508 (515)
T 2d4e_A 497 DLKTIALPLRPP 508 (515)
T ss_dssp EEEEEEEESSCC
T ss_pred ceeEEEEcCCCC
Confidence 999999987543
No 19
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae}
Probab=100.00 E-value=1.2e-101 Score=807.46 Aligned_cols=459 Identities=28% Similarity=0.445 Sum_probs=428.9
Q ss_pred cccceeCCeeeeCCCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHHH
Q 011080 13 VYKFFYDGVWRKSSSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKAP 92 (494)
Q Consensus 13 ~~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~ 92 (494)
..++||||+|+.+.++..++++||+||+++++++.++.+|+++|+++|++||+.|+.++..+|.++|+++++.|++++++
T Consensus 25 ~~~~~I~G~~~~~~~~~~~~v~nP~tg~~i~~v~~~~~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~e 104 (497)
T 3i44_A 25 KRKFYINGLWDDPSTPHDLYVIDPSTEEACAVISLGSTRDADKAINAAKKAFQTWKTTSPHERLGFVEKILEIYEKRSSD 104 (497)
T ss_dssp ECCEEETTEEECCSSCCEEEEEETTTTEEEEEEECCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHH
T ss_pred ccCeeECCEEecCCCCCeEEeECCCCCCEEEEEcCCCHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999887778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCChHHHH-HHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEE-eeeceeEEeeCCCCchH
Q 011080 93 IAECLVKEIAKPAKDAV-TEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTS-KIPLGVVLAIPPFNYPV 170 (494)
Q Consensus 93 l~~~~~~e~Gk~~~~a~-~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~P~GVv~~i~p~n~P~ 170 (494)
|++++++|+|||+.+++ .|+..+++.++++++....+...... + .+...++. ++|+|||++|+|||||+
T Consensus 105 la~~~~~e~Gk~~~~a~~~ev~~~~~~~~~~a~~~~~~~~~~~~------~---~~~~~~~~~~~P~GVv~~I~PwN~P~ 175 (497)
T 3i44_A 105 MAKTISMEMGAPIDMALNAQTATGSSHIRNFIKAYKEFSFQEAL------I---EGNEQAILHYDAIGVVGLITPWNWPM 175 (497)
T ss_dssp HHHHHHHHHCCCHHHHHHTHHHHHHHHHHHHHHHHHHCCSEEES------S---TTCSSCEEEEEECCEEEEECCSSSHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhcccccccc------c---CCceeEEEeecCceEEEEECCCcchH
Confidence 99999999999999999 89999999999998876554322110 0 12334567 99999999999999999
Q ss_pred HHHHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHH
Q 011080 171 NLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGIS 249 (494)
Q Consensus 171 ~~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~ 249 (494)
.+.++++++||++||+||+|||+.+|+++..|+++|.++|+|+|++|+|+|++.++++.|++||+|+.|+|||| .+|+.
T Consensus 176 ~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~eaGlP~gvvnvv~g~~~~~g~~L~~hp~v~~I~FTGS~~~G~~ 255 (497)
T 3i44_A 176 NQVTLKVIPALLAGCTMVLKPSEIAPLSAMLFAEILDEAALPSGVFNLINGDGANVGSYLSAHPDLEMISFTGSTRAGKD 255 (497)
T ss_dssp HHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHTTCCTTSEEECCCCTTTHHHHHHHCTTCCEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEECCcccHHHHHHHHHHHHHhCcCCCeEEEEeCCChHHHHHHHhCCCcCEEEEeCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999 99999
Q ss_pred HHHHc--CCCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccccCC
Q 011080 250 ISKKA--GMIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTVGA 327 (494)
Q Consensus 250 v~~~a--~~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~g~ 327 (494)
|.+.+ .+||+++|+|||||+||++||| +.|++.+++++|.|+||.|++++|||||+++||+|+++|+++++++++||
T Consensus 256 i~~~aa~~~k~v~lElGGk~p~IV~~dAD-~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~vG~ 334 (497)
T 3i44_A 256 ISKNASNTLKRVCLELGGKGANIIFADAD-IDALQRGVRHCFYNSGQSCNAPTRMLVEQAIYDKAIKTAKDIAEKTQVGP 334 (497)
T ss_dssp HHHHHHTTTCEEEEECCCCCEEEECTTSC-TTHHHHHHHHHHGGGGCCTTCCCEEEEEGGGHHHHHHHHHHHHHHCCBCC
T ss_pred HHHHHhhcCCceeeccCCCCceEECCChh-HHHHHHHHHHHHhcCCCCcccCCEEEEcHHHHHHHHHHHHHHHHhccCCC
Confidence 99877 4799999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCCCCccCCHHHHHHHHHHHHHHHHcCCEEeecc--c----CCCceeecEEEeeCCCCCCCcccccccceeeeEec
Q 011080 328 P-EDDCDITPVVTESSANFIEGLVMDAKQKAATFCQEY--K----REGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRI 400 (494)
Q Consensus 328 p-~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~~~~--~----~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~ 400 (494)
| ++++++||++++.+.+++.++|++++++|+++..|+ . ..|+|++|||+.+++++|++++||+||||++|++|
T Consensus 335 p~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~ 414 (497)
T 3i44_A 335 GHQTGNHIGPVVSKEQYDKIQDLIQSGIDEGATLVTGGTGLPMGMERGYYVRPTVFADVKPHMRIFREEIFGPVLSLLPF 414 (497)
T ss_dssp TTSCSSCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSSCCTTCCSSCCCCCEEEESCCTTSHHHHSCCCSSEEEEEEE
T ss_pred CCCCCCccCCCcCHHHHHHHHHHHHHHHHCCCEEEECCCcCCCcCCCCcEECCEEEEeCCCCCHHHcCcccCceEEEEec
Confidence 9 889999999999999999999999999999995443 2 26899999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCCCcchHHHHHHhhcee
Q 011080 401 NSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIK 480 (494)
Q Consensus 401 ~~~~eai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~k 480 (494)
+|+||||+++|+++|||+++|||+|.+++.++++++++|+|+||. .... ..+||||+|.||+|+++|.+|+++|++.|
T Consensus 415 ~~~deAi~~aN~~~~GL~a~v~t~d~~~a~~~a~~l~aG~V~iN~-~~~~-~~~PfGG~k~SG~Gr~~G~~gl~~~t~~K 492 (497)
T 3i44_A 415 NTEDEAVTLANDTEYGLTNYIQSQDRSKCRRIAAQVRSGMVEVNG-HELP-GGSYFGGVKFSGRAREGGLWGIKEFLDTK 492 (497)
T ss_dssp SSHHHHHHHHHCSSCCSEEEEECSCHHHHHHHHHHSCCSEEEETT-CCCC-TTCCBCCSGGGCCCCBSHHHHHHTTEEEE
T ss_pred CCHHHHHHHHhCCCCCcEEEEECCCHHHHHHHHHhCCcCeEEECC-CCCC-CCCCcCCcCcCcCCccchHHHHHHhccee
Confidence 999999999999999999999999999999999999999999995 3333 45899999999999999999999999999
Q ss_pred EEE
Q 011080 481 STV 483 (494)
Q Consensus 481 ~i~ 483 (494)
+|+
T Consensus 493 ~v~ 495 (497)
T 3i44_A 493 AIS 495 (497)
T ss_dssp EES
T ss_pred EEE
Confidence 874
No 20
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP: c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Probab=100.00 E-value=2.5e-101 Score=805.92 Aligned_cols=466 Identities=31% Similarity=0.497 Sum_probs=437.0
Q ss_pred cccceeCCeeeeCCCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhH---HhcCCCHHHHHHHHHHHHHHHHHc
Q 011080 13 VYKFFYDGVWRKSSSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQK---SWAKTPLWKRAELLHKAAAILKEQ 89 (494)
Q Consensus 13 ~~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~ 89 (494)
..++||||+|+.+.++..++++||+||+++++++.++.+|+++++++|++||+ .|+.++..+|.++|+++++.|+++
T Consensus 20 ~~~~~i~G~~~~~~~~~~~~v~nP~tg~~i~~~~~~~~~~v~~av~~A~~A~~~~~~w~~~~~~~R~~~L~~~a~~l~~~ 99 (501)
T 1bxs_A 20 YTKIFINNEWHSSVSGKKFPVFNPATEEKLCEVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERD 99 (501)
T ss_dssp CCSEEETTEEECCTTCCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHTSTTSHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred ccCeeECCEEecCCCCCeEEEECCCCCCEEEEEeCCCHHHHHHHHHHHHHHhhcccchhhCCHHHHHHHHHHHHHHHHHH
Confidence 45689999999876677899999999999999999999999999999999999 899999999999999999999999
Q ss_pred HHHHHHHHHHHhCCChHHHH-HHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCc
Q 011080 90 KAPIAECLVKEIAKPAKDAV-TEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNY 168 (494)
Q Consensus 90 ~~~l~~~~~~e~Gk~~~~a~-~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~ 168 (494)
+++|++++++|+|||+.++. .|+..+++.++++++.++++.+.... . ..+...++.++|+|||++|+||||
T Consensus 100 ~~ela~~~~~e~Gk~~~e~~~~ev~~~~~~~~~~a~~~~~~~g~~~~-------~-~~~~~~~~~~~P~GVV~~I~PwN~ 171 (501)
T 1bxs_A 100 RLLLATMEAMNGGKLFSNAYLMDLGGCIKTLRYCAGWADKIQGRTIP-------M-DGNFFTYTRSEPVGVCGQIIPWNF 171 (501)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHTHHHHHHHHHHHHHHHGGGCCEEEEC-------C-SSSEEEEEEEEECCEEEEECCSSS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeee-------c-cCCcceeEEecCCceEEEECCCcc
Confidence 99999999999999999875 69999999999999988877654211 1 124567899999999999999999
Q ss_pred hHHHHHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHH
Q 011080 169 PVNLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTG 247 (494)
Q Consensus 169 P~~~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~ 247 (494)
|+.+.++++++||++||+||+|||+.+|+++..|++++.++|+|+|++|+|+|++.++++.|++||+|+.|+|||| .+|
T Consensus 172 P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gv~~vv~g~~~~~g~~L~~~~~v~~I~FTGS~~~G 251 (501)
T 1bxs_A 172 PLLMFLWKIGPALSCGNTVVVKPAEQTPLTALHMGSLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTEVG 251 (501)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCTTCCHHHHHHHHHHHHHTCCTTSEEECCSCTTTHHHHHHTCTTCSEEEEESCHHHH
T ss_pred hHHHHHHHHHHHHHcCCeeeccCCCccHHHHHHHHHHHHHhCCCcceEEEEecCchHHHHHHHhCCCcCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999999999999999999988889999999999999999999 999
Q ss_pred HHHHHHc---CCCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccc
Q 011080 248 ISISKKA---GMIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLT 324 (494)
Q Consensus 248 ~~v~~~a---~~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~ 324 (494)
+.|.+.+ .++|+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||++++|+|+++|++++++++
T Consensus 252 ~~i~~~aa~~~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~ 331 (501)
T 1bxs_A 252 KLIKEAAGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESIYDEFVRRSVERAKKYV 331 (501)
T ss_dssp HHHHHHHHHTTCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHTTTTCCTTCCCEEEEEHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHhhhccCCcEEEecCCcCeEEECCCCCHHHHHHHHHHHHHhcCCCCCCCCCEEEEchhHHHHHHHHHHHHHHhcC
Confidence 9998875 4899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC-CCCCCCCccCCHHHHHHHHHHHHHHHHcCCEEe-eccc--CCCceeecEEEeeCCCCCCCcccccccceeeeEec
Q 011080 325 VGAP-EDDCDITPVVTESSANFIEGLVMDAKQKAATFC-QEYK--REGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRI 400 (494)
Q Consensus 325 ~g~p-~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~-~~~~--~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~ 400 (494)
+||| ++++++||++++.+++++.++|++++++|+++. +|.. ..|+|++|||+.+++++|++++||+||||++|++|
T Consensus 332 ~G~p~~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~ 411 (501)
T 1bxs_A 332 LGNPLTPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSDVTDDMRIAKEEIFGPVQQIMKF 411 (501)
T ss_dssp BSCTTSTTCCBCCCSCHHHHHHHHHHHHHHHHTTCEECSCCSEECSSSCEECCEEEESCCTTSHHHHSCCCSSEEEEEEE
T ss_pred CCCCcccCCccCCCcCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCCeeCCEEEecCCCCCHHHhcccccceEEEEEe
Confidence 9999 889999999999999999999999999999995 4432 36999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCCCcchHHHHHHhhcee
Q 011080 401 NSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIK 480 (494)
Q Consensus 401 ~~~~eai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~k 480 (494)
+|+||||+++|+++|||+++|||+|.++++++++++++|+|+||++.... ..+||||+|.||+|+++|.+|+++|++.|
T Consensus 412 ~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~-~~~pfGG~k~SG~G~~~G~~~l~~f~~~K 490 (501)
T 1bxs_A 412 KSLDDVIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGTVWVNCYSVVS-AQCPFGGFKMSGNGRELGEYGFHEYTEVK 490 (501)
T ss_dssp CCHHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCCSEEEESCCCCCC-TTSCBCCSGGGEESCBSHHHHHHTTEEEE
T ss_pred CCHHHHHHHHhcCCCCeeEEEEcCCHHHHHHHHHhcCeeEEEECCCCCCC-CCCCCCCcCcCCcCccchHHHHHHhhCee
Confidence 99999999999999999999999999999999999999999999876544 45999999999999999999999999999
Q ss_pred EEEEecC
Q 011080 481 STVINLP 487 (494)
Q Consensus 481 ~i~~~~~ 487 (494)
+|++++.
T Consensus 491 ~v~~~~~ 497 (501)
T 1bxs_A 491 TVTIKIS 497 (501)
T ss_dssp EEEEECS
T ss_pred EEEEccC
Confidence 9998753
No 21
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A*
Probab=100.00 E-value=2.1e-101 Score=805.12 Aligned_cols=466 Identities=29% Similarity=0.459 Sum_probs=436.6
Q ss_pred CcccceeCCeeeeCCCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHH
Q 011080 12 GVYKFFYDGVWRKSSSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKA 91 (494)
Q Consensus 12 ~~~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ 91 (494)
..+++||||+|+.+.++..++++||+||+++++++.++.+|+++++++|++||+.|+.++..+|.++|+++++.|+++++
T Consensus 5 ~~~~~~i~g~~~~~~~~~~~~v~~P~tg~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ 84 (479)
T 2imp_A 5 VQHPMYIDGQFVTWRGDAWIDVVNPATEAVISRIPDGQAEDARKAIDAAERAQPEWEALPAIERASWLRKISAGIRERAS 84 (479)
T ss_dssp EECCEEETTEEECCCCSCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHH
T ss_pred cccceeECCEEecCCCCCeEEEECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999986667789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchHH
Q 011080 92 PIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVN 171 (494)
Q Consensus 92 ~l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~~ 171 (494)
+|++++++|+|||+.+++.|+..+++.++++++.++++.+.... ....+...++.++|+|||++|+|||||+.
T Consensus 85 ela~~~~~e~Gk~~~ea~~ev~~~~~~l~~~a~~~~~~~~~~~~-------~~~~~~~~~~~~~P~GVv~~I~PwN~P~~ 157 (479)
T 2imp_A 85 EISALIVEEGGKIQQLAEVEVAFTADYIDYMAEWARRYEGEIIQ-------SDRPGENILLFKRALGVTTGILPWNFPFF 157 (479)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHTTTTTCCCEEEC-------CSSTTEEEEEEEEECSEEEEECCSSSHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc-------cCCCCceeEEEEeccceEEEECCCchHHH
Confidence 99999999999999999999999999999998877665544211 11123467899999999999999999999
Q ss_pred HHHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHHH
Q 011080 172 LAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGISI 250 (494)
Q Consensus 172 ~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~v 250 (494)
+.++++++||++||+||+|||+.+|+++.+|+++|.++|+|+|++|+|+|++.++++.|.+||+++.|+|||| .+|+.|
T Consensus 158 ~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~~~~~~L~~~~~v~~V~fTGS~~~g~~i 237 (479)
T 2imp_A 158 LIARKMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVGQELAGNPKVAMVSMTGSVSAGEKI 237 (479)
T ss_dssp HHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHHTCCTTSEEECCSCTTTHHHHHHHCTTEEEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEECCccchHHHHHHHHHHHHhCCCcCeEEEEECCcHHHHHHHHhCCCcCEEEEeCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999977788999999999999999999 999999
Q ss_pred HHHc--CCCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccccCCC
Q 011080 251 SKKA--GMIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTVGAP 328 (494)
Q Consensus 251 ~~~a--~~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~g~p 328 (494)
.+.+ .++|+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||++++|+|+++|+++++++++|||
T Consensus 238 ~~~aa~~~~~v~lElGGk~p~iV~~dADl~~aa~~i~~~~~~n~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~g~p 317 (479)
T 2imp_A 238 MATAAKNITKVCLELGGKAPAIVMDDADLELAVKAIVDSRVINSGQVCNCAERVYVQKGIYDQFVNRLGEAMQAVQFGNP 317 (479)
T ss_dssp HHHHHTTTCEEEEECCCCCEEEECTTSCHHHHHHHHHTTSSTTTTCCSSSCSEEEEEGGGHHHHHHHHHHHHHTCCBSCT
T ss_pred HHHHhccCCcEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhhcCCCcCcCCcEEEEehhhHHHHHHHHHHHHHhcccCCc
Confidence 9877 48999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -C-CCCCCCccCCHHHHHHHHHHHHHHHHcCCEEe-eccc--CCCceeecEEEeeCCCCCCCcccccccceeeeEecCCH
Q 011080 329 -E-DDCDITPVVTESSANFIEGLVMDAKQKAATFC-QEYK--REGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSV 403 (494)
Q Consensus 329 -~-~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~-~~~~--~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~~ 403 (494)
+ +++++||++++.+++++.+++++++++|+++. +|.. .+|+|++|||+.+++++|++++||+||||++|++|+|+
T Consensus 318 ~~~~~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~Ptvl~~v~~~~~~~~eEiFGPVl~v~~~~~~ 397 (479)
T 2imp_A 318 AERNDIAMGPLINAAALERVEQKVARAVEEGARVAFGGKAVEGKGYYYPPTLLLDVRQEMSIMHEETFGPVLPVVAFDTL 397 (479)
T ss_dssp TTCSSCSBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCCCCSSSCCCCCEEEESCCTTSGGGGSCCCSSEEEEEEESSH
T ss_pred cccCCCccCCCcCHHHHHHHHHHHHHHHHCCCEEEECCcccCCCCceECCEEEeCCCCCCHHHhCccCCceEEEEeeCCH
Confidence 7 79999999999999999999999999999985 4432 25899999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCCCcchHHHHHHhhceeEEE
Q 011080 404 EEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTV 483 (494)
Q Consensus 404 ~eai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~k~i~ 483 (494)
||||+++|+++|||+++|||+|.++++++++++++|+|+||++.... ..+||||+|+||+|+++|.+|+++|++.|+|+
T Consensus 398 ~eAi~~aN~~~~gL~a~v~t~d~~~~~~~~~~l~~G~v~iN~~~~~~-~~~PfGG~k~SG~G~~~g~~~l~~~~~~k~v~ 476 (479)
T 2imp_A 398 EDAISMANDSDYGLTSSIYTQNLNVAMKAIKGLKFGETYINRENFEA-MQGFHAGWRKSGIGGADGKHGLHEYLQTQVVY 476 (479)
T ss_dssp HHHHHHHHCSSEESEEEEECCCHHHHHHHHHHCCSSEEEESSCCCCC-TTSCBCCEETTEESCBSHHHHHHTTEEEEEEE
T ss_pred HHHHHHHhcCCCCeeEEEECCCHHHHHHHHHhCCEeEEEECCCCCCC-CCCCCCCCCCCCCCCCchHHHHHHhcCeeEEE
Confidence 99999999999999999999999999999999999999999987654 45999999999999999999999999999997
Q ss_pred Ee
Q 011080 484 IN 485 (494)
Q Consensus 484 ~~ 485 (494)
++
T Consensus 477 ~~ 478 (479)
T 2imp_A 477 LQ 478 (479)
T ss_dssp EE
T ss_pred ec
Confidence 74
No 22
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Probab=100.00 E-value=3.1e-101 Score=808.04 Aligned_cols=473 Identities=32% Similarity=0.488 Sum_probs=426.5
Q ss_pred cCCcccceeCCeeeeCCCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHc
Q 011080 10 ENGVYKFFYDGVWRKSSSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQ 89 (494)
Q Consensus 10 ~~~~~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~ 89 (494)
.-..+++||||+|+.+.++..++++||+||+++++++.++.+++++++++|++||+.|+.++..+|.++|+++++.|+++
T Consensus 9 ~~~~~~~~I~G~~~~~~~~~~~~~~~P~tg~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~ 88 (508)
T 3r64_A 9 GIDATKHLIGGQWVEGNSDRISTNINPYDDSVIAESKQASIADVDAAYEAAKKAQAEWAATPAAERSAIIYRAAELLEEH 88 (508)
T ss_dssp TBCTTSEEETTEEECCCSSCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred CccccceeECCEEecCCCCCEEEeECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHh
Confidence 33567899999999877788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCch
Q 011080 90 KAPIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYP 169 (494)
Q Consensus 90 ~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P 169 (494)
+++|++++++|+|||..+++.|+..+++.+++++....+..+ ..+ . . ...+...++.++|+|||++|+|||||
T Consensus 89 ~~ela~~~~~e~Gk~~~~a~~Ev~~~~~~~~~~a~~~~~~~~-~~~--~---~-~~~~~~~~~~~~P~GVv~~I~PwN~P 161 (508)
T 3r64_A 89 REEIVEWLIKESGSTRSKANLEITLAGNITKESASFPGRVHG-RIS--P---S-NTPGKENRVYRVAKGVVGVISPWNFP 161 (508)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHTTSTTTCCE-EEE--C---C-SSTTEEEEEEEEECSEEEEECCSSSH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcC-ccc--c---c-CCCCceeEEEEecceEEEEECCCcch
Confidence 999999999999999999999999999999999876655433 111 0 0 01246788999999999999999999
Q ss_pred HHHHHhhHHHHhhcCCEEEEcCCCCChHHH-HHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHH
Q 011080 170 VNLAVSKIAPALIAGNSIVLKPPTQGAVAA-LHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTG 247 (494)
Q Consensus 170 ~~~~~~~~~~aL~aGN~vvlkps~~~~~t~-~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~ 247 (494)
+.+.++++++||++||+||+|||+.+|+++ .+|+++|.++|+|+|++|+++|++.++++.|++||++|.|+|||| .+|
T Consensus 162 ~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~~l~~ll~~aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~fTGS~~~g 241 (508)
T 3r64_A 162 LNLSIRSVAPALAVGNAVVIKPASDTPVTGGVIPARIFEEAGVPAGVISTVAGAGSEIGDHFVTHAVPKLISFTGSTPVG 241 (508)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCTTCHHHHTHHHHHHHHTTTCCTTTEEECCCCTTTTHHHHHHCSSCSEEEEESCHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHHhCcCcCeEEEEeCCCHHHHHHHhhCCCccEEEEECCHHHH
Confidence 999999999999999999999999999999 999999999999999999999987889999999999999999999 999
Q ss_pred HHHHHHc----CCCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhcc
Q 011080 248 ISISKKA----GMIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKL 323 (494)
Q Consensus 248 ~~v~~~a----~~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~ 323 (494)
+.+.+.+ .++|+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||++++|+|+++|+++++++
T Consensus 242 ~~i~~~aa~~~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~ 321 (508)
T 3r64_A 242 RRVGELAINGGPMKTVALELGGNAPFVVLADADIDAAAQAAAVGAFLHQGQICMSINRVIVDAAVHDEFLEKFVEAVKNI 321 (508)
T ss_dssp HHHHHHHHSSSSCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHTSTTCTTTCCSEEEEEHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhcccCCCceEeecCCcCceEECCCCCHHHHHHHHHHHHHhcCCCCcccCcEEEEehhHHHHHHHHHHHHHHhc
Confidence 9999876 579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC-CCCCCCCccCCHHHHHHHHHHHHHHHHcCCEEeecccCCCceeecEEEeeCCCCCCCcccccccceeeeEecCC
Q 011080 324 TVGAP-EDDCDITPVVTESSANFIEGLVMDAKQKAATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINS 402 (494)
Q Consensus 324 ~~g~p-~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~~~~~~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~ 402 (494)
++||| ++++++||++++.+.+++++++++++++|+++..++..+|+|+.|||+.+++++|++++||+||||++|++|+|
T Consensus 322 ~~G~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~ 401 (508)
T 3r64_A 322 PTGDPSAEGTLVGPVINDSQLSGLKEKIELAKKEGATVQVEGPIEGRLVHPHVFSDVTSDMEIAREEIFGPLISVLKADD 401 (508)
T ss_dssp CBSCTTSSSCCBCCCSCHHHHHHHHHHHHHHHTTTCEEEECCCEETTEECCEEEEEECTTSGGGTSCCCSSEEEEEEESS
T ss_pred cCCCCccCCCcccCCCCHHHHHHHHHHHHHHHHcCCEEEecCCCCCcEEecEEEecCCCCChhhcccccCceEEEEEeCC
Confidence 99999 78999999999999999999999999999999655555799999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCCCcchHHHHHHhhceeEE
Q 011080 403 VEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKST 482 (494)
Q Consensus 403 ~~eai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~k~i 482 (494)
+||||+++|+++|||+++|||+|.++++++++++++|+|+||+++......+||||+|.||+|+++|.+|+++|++.|+|
T Consensus 402 ~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~~PfGG~~~SG~Gr~~G~~~l~~ft~~k~v 481 (508)
T 3r64_A 402 EAHAAELANASDFGLSAAVWSKDIDRAAQFALQIDSGMVHINDLTVNDEPHVMFGGSKNSGLGRFNGDWAIEEFTTDRWI 481 (508)
T ss_dssp HHHHHHHHTSSSCCSCEEEECSCHHHHHHHHTTSCSSEEEECC--------------------CCCHHHHHHHTEEEEEE
T ss_pred HHHHHHHHhCCCCCcEEEEEcCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCCcCCcCCCCCCcCccHHHHHHhhceEEE
Confidence 99999999999999999999999999999999999999999998765345689999999999999999999999999999
Q ss_pred EEecCCC
Q 011080 483 VINLPTP 489 (494)
Q Consensus 483 ~~~~~~~ 489 (494)
+++...+
T Consensus 482 ~~~~~~~ 488 (508)
T 3r64_A 482 GIKRSAE 488 (508)
T ss_dssp EEECCST
T ss_pred EEecccc
Confidence 9987654
No 23
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics, PSI-2, protein STR initiative; HET: NAD GOL; 1.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.2e-101 Score=808.09 Aligned_cols=465 Identities=33% Similarity=0.501 Sum_probs=436.4
Q ss_pred cccceeCCeeeeCCCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhH--HhcCCCHHHHHHHHHHHHHHHHHcH
Q 011080 13 VYKFFYDGVWRKSSSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQK--SWAKTPLWKRAELLHKAAAILKEQK 90 (494)
Q Consensus 13 ~~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~--~w~~~~~~~R~~~L~~~a~~l~~~~ 90 (494)
..++||||+|+.+.++..++++||+||+++++++.++.+++++++++|++||+ .|+.++..+|.++|+++++.|++++
T Consensus 8 ~~~~~i~G~~~~~~~~~~~~~~nP~tg~~i~~~~~~~~~~v~~av~~A~~A~~~g~w~~~~~~~R~~~L~~~a~~l~~~~ 87 (495)
T 3b4w_A 8 YDKLFIGGKWTKPSTSDVIEVRCPATGEYVGKVPMAAAADVDAAVAAARAAFDNGPWPSTPPHERAAVIAAAVKMLAERK 87 (495)
T ss_dssp CSSEEETTEEECCSSCCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHHHSSTTTSCHHHHHHHHHHHHHHHHHTH
T ss_pred ccceeECCEEecCCCCCeEEEECCCCCCEEEEEeCCCHHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHHHHHHHH
Confidence 34689999999876677899999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHhCCChHHHH-HHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCch
Q 011080 91 APIAECLVKEIAKPAKDAV-TEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYP 169 (494)
Q Consensus 91 ~~l~~~~~~e~Gk~~~~a~-~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P 169 (494)
++|++++++|+|||+.+++ .|+..+++.++++++.++++.+.... . ..+...++.++|+|||++|+|||||
T Consensus 88 ~ela~~~~~e~Gk~~~ea~~~Ev~~~~~~~~~~a~~~~~~~g~~~~-------~-~~~~~~~~~~~P~GVv~~I~PwN~P 159 (495)
T 3b4w_A 88 DLFTKLLAAETGQPPTIIETMHWMGSMGAMNYFAGAADKVTWTETR-------T-GSYGQSIVSREPVGVVGAIVAWNVP 159 (495)
T ss_dssp HHHHHHHHHHHCCCHHHHHHTTTHHHHHHHHHHHTCGGGSCSEEEE-------E-ETTEEEEEEEEECCEEEEECCSSSH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-------C-CCCceEEEEEccCceEEEECCCcch
Confidence 9999999999999999998 89999999999999887776654211 0 1134668999999999999999999
Q ss_pred HHHHHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHH
Q 011080 170 VNLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGI 248 (494)
Q Consensus 170 ~~~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~ 248 (494)
+.+.++++++||++||+||+|||+.+|+++.+|+++|.++|+|+|++|+|+| +.+++..|++||+|+.|+|||| .+|+
T Consensus 160 ~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~eaGlP~gvv~vv~g-~~~~g~~L~~~~~v~~I~FTGS~~~G~ 238 (495)
T 3b4w_A 160 LFLAVNKIAPALLAGCTIVLKPAAETPLTANALAEVFAEVGLPEGVLSVVPG-GIETGQALTSNPDIDMFTFTGSSAVGR 238 (495)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECBTTSCHHHHHHHHHHHHTTCCTTSEEECCB-SHHHHHHHTTCTTCCEEEEESCHHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCccHHHHHHHHHHHHHhCCCcCeEEEEeC-CHHHHHHHHhCCCcCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 8889999999999999999999 9999
Q ss_pred HHHHHc--CCCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccccC
Q 011080 249 SISKKA--GMIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTVG 326 (494)
Q Consensus 249 ~v~~~a--~~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~g 326 (494)
.|.+.+ .++|+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||++++|+|+++|+++++++++|
T Consensus 239 ~i~~~aa~~l~pv~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~g 318 (495)
T 3b4w_A 239 EVGRRAAEMLKPCTLELGGKSAAIILEDVDLAAAIPMMVFSGVMNAGQGCVNQTRILAPRSRYDEIVAAVTNFVTALPVG 318 (495)
T ss_dssp HHHHHHHHTTCCEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEGGGHHHHHHHHHHHHHHSCBC
T ss_pred HHHHHhhhcCCceeecCCCcceEEECCCCCHHHHHHHHHHHHhhcCCCCCCCCeEEEEcccHHHHHHHHHHHHHHhcCCC
Confidence 999887 489999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCCCCCccCCHHHHHHHHHHHHHHHHcCCEEe-eccc----CCCceeecEEEeeCCCCCCCcccccccceeeeEec
Q 011080 327 AP-EDDCDITPVVTESSANFIEGLVMDAKQKAATFC-QEYK----REGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRI 400 (494)
Q Consensus 327 ~p-~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~-~~~~----~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~ 400 (494)
|| ++++++||++++.+++++.+++++++++|+++. +|.. ..|+|++|||+.+++++|++++||+||||++|++|
T Consensus 319 ~p~~~~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~ 398 (495)
T 3b4w_A 319 PPSDPAAQIGPLISEKQRTRVEGYIAKGIEEGARLVCGGGRPEGLDNGFFIQPTVFADVDNKMTIAQEEIFGPVLAIIPY 398 (495)
T ss_dssp CTTCTTCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSCCTTCTTSCCCCCEEEESCCTTSHHHHSCCCSSEEEEEEE
T ss_pred CCccCCCccCCCcCHHHHHHHHHHHHHHHhCCCEEEecCcccccccCCceeCCEEecCCCCCChhhhcccccceEEEEec
Confidence 99 889999999999999999999999999999995 4432 25899999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCCCcchHHHHHHhhcee
Q 011080 401 NSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIK 480 (494)
Q Consensus 401 ~~~~eai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~k 480 (494)
+|+||||+++|+++|||+++|||+|.++++++++++++|+|+||+++ . ...+||||+|.||+|+++|.+|+++|++.|
T Consensus 399 ~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~-~-~~~~PfGG~k~SG~Gr~~G~~gl~~~~~~k 476 (495)
T 3b4w_A 399 DTEEDAIAIANDSVYGLAGSVWTTDVPKGIKISQQIRTGTYGINWYA-F-DPGSPFGGYKNSGIGRENGPEGVEHFTQQK 476 (495)
T ss_dssp SSHHHHHHHHHCSSCCSCCEEECSCHHHHHHHHHHSCCSCCEESSCC-C-CTTSCBCCSGGGEESCBSHHHHHHTTEEEE
T ss_pred CCHHHHHHHHhcCCCCeEEEEECCCHHHHHHHHHhCCEeEEEECCCC-C-CCCCCCCCCCCCCcCccchHHHHHHhccee
Confidence 99999999999999999999999999999999999999999999876 4 355999999999999999999999999999
Q ss_pred EEEEecCC
Q 011080 481 STVINLPT 488 (494)
Q Consensus 481 ~i~~~~~~ 488 (494)
+|+++++.
T Consensus 477 ~v~~~~~~ 484 (495)
T 3b4w_A 477 SVLLPMGY 484 (495)
T ss_dssp EEECCTTC
T ss_pred EEEEccCc
Confidence 99887643
No 24
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A* 2xdr_A*
Probab=100.00 E-value=4.1e-101 Score=805.83 Aligned_cols=471 Identities=32% Similarity=0.526 Sum_probs=442.7
Q ss_pred CcccceeCCeeeeCCCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHH
Q 011080 12 GVYKFFYDGVWRKSSSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKA 91 (494)
Q Consensus 12 ~~~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ 91 (494)
..+++||||+|+.+.++..++++||+||+++++++.++.+++++++++|++||+.|+.++..+|.++|+++++.|+++++
T Consensus 5 ~~~~~~I~G~~~~~~~~~~~~~~~P~tg~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ 84 (490)
T 2ve5_A 5 EEQKLYIGGRYVEASSGATFETINPANGEVLAKVQRASREDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDILRERND 84 (490)
T ss_dssp CCBCEECSSSEECCSSSCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHH
T ss_pred ccCCeeECCEEecCCCCCeEEeECCCCCCEEEEEcCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999987778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCChHHHHH-HHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchH
Q 011080 92 PIAECLVKEIAKPAKDAVT-EVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPV 170 (494)
Q Consensus 92 ~l~~~~~~e~Gk~~~~a~~-ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~ 170 (494)
+|++++++|+|||..+++. |+..+++.++++++.+.++.+...+. ..+...++.++|+|||++|+|||||+
T Consensus 85 ~la~~~~~e~Gk~~~ea~~~ev~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~~~~P~GVv~~I~pwN~P~ 156 (490)
T 2ve5_A 85 ELAALETLDTGKPLAETRSVDIVTGADVLEYYAGLVPAIEGEQIPL--------RETSFVYTRREPLGVVAGIGAWNYPV 156 (490)
T ss_dssp HHHHHHHHHHCCCHHHHTTTHHHHHHHHHHHHHHHGGGCCEEEEEE--------ETTEEEEEEEEECSEEEEECCSSSHH
T ss_pred HHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHhcCccccC--------CCCceeeEeeccccEEEEECCCcchH
Confidence 9999999999999999996 99999999999998877655443211 12466789999999999999999999
Q ss_pred HHHHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHH
Q 011080 171 NLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGIS 249 (494)
Q Consensus 171 ~~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~ 249 (494)
.+.++++++||++||+||+|||+.+|+++.+|+++|.++|+|+|++|+++|++.++++.|+.||+||.|+|||| .+|+.
T Consensus 157 ~~~~~~~~~ALaaGN~vVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~~~~~~L~~~p~vd~v~fTGS~~~g~~ 236 (490)
T 2ve5_A 157 QIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYTEAGVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKK 236 (490)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHHTCCTTSEEECCSCTTTHHHHHHHCTTCCEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHhCcCcCeEEEEeCCChHHHHHHHhCCCcCEEEEeCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999 99999
Q ss_pred HHHHc---CCCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccccC
Q 011080 250 ISKKA---GMIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTVG 326 (494)
Q Consensus 250 v~~~a---~~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~g 326 (494)
+.+.+ .++|+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||++++|+|+++|+++++++++|
T Consensus 237 i~~~a~a~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~g 316 (490)
T 2ve5_A 237 VMASASSSSLKEVTMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQARFEAKVLERVQRIRLG 316 (490)
T ss_dssp HHHHHHHHHCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCCCEEEEEGGGHHHHHHHHHHHHHTCCBS
T ss_pred HHHhchhccccceEEEcCCCceeEECCCCCHHHHHHHHHHHHHhcCCCCccCCCeEEEcHHHHHHHHHHHHHHHHhccCC
Confidence 98876 389999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCCCCCccCCHHHHHHHHHHHHHHHHcCCEEe-eccc------CCCceeecEEEeeCCCCCCCcccccccceeeeE
Q 011080 327 AP-EDDCDITPVVTESSANFIEGLVMDAKQKAATFC-QEYK------REGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVI 398 (494)
Q Consensus 327 ~p-~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~-~~~~------~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~ 398 (494)
|| ++++++||++++.+++++.+++++++++|++++ +|.. .+|+|++|||+.+++++|++++||+||||++|+
T Consensus 317 ~p~d~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gG~~~~~~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPvl~v~ 396 (490)
T 2ve5_A 317 DPQDENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSIL 396 (490)
T ss_dssp CTTSTTCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCCTTTGGGTTCBCCEEEESCCTTSHHHHSCCCSSEEEEE
T ss_pred CCCCCCCccCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcccccccCCCCceEccEEEecCCCCCccccceeeCCeEEEE
Confidence 99 889999999999999999999999999999995 4422 368999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCCCcchHHHHHHhhc
Q 011080 399 RINSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTK 478 (494)
Q Consensus 399 ~~~~~~eai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~ 478 (494)
+|+|+||||+++|+++|||+++|||+|.++++++++++++|+|+||++.... ..+||||+|.||+|+++|.+++++|++
T Consensus 397 ~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~-~~~pfGG~k~SG~G~~~G~~~~~~f~~ 475 (490)
T 2ve5_A 397 VYDDEDEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWINTWGESP-AEMPVGGYKQSGVGRENGLTTLAHYTR 475 (490)
T ss_dssp EESCHHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCCSEEEESCCSCCC-TTSCBCCSGGGEESCBSHHHHHHTTEE
T ss_pred EeCCHHHHHHHHhCCCCCceEEEEcCCHHHHHHHHHhCCcceEEECCCCCCC-CCCCcCCCCCCCCCCcchHHHHHHhhe
Confidence 9999999999999999999999999999999999999999999999987654 459999999999999999999999999
Q ss_pred eeEEEEecCCCCC
Q 011080 479 IKSTVINLPTPSY 491 (494)
Q Consensus 479 ~k~i~~~~~~~~~ 491 (494)
.|+|+++++..+.
T Consensus 476 ~k~v~~~~~~~~~ 488 (490)
T 2ve5_A 476 IKSVQVELGDYAS 488 (490)
T ss_dssp EEEEEEECSCCCC
T ss_pred eEEEEEccCcCCC
Confidence 9999999875443
No 25
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A
Probab=100.00 E-value=6.1e-101 Score=801.88 Aligned_cols=463 Identities=29% Similarity=0.438 Sum_probs=434.0
Q ss_pred cccceeCCeeeeCCCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHHH
Q 011080 13 VYKFFYDGVWRKSSSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKAP 92 (494)
Q Consensus 13 ~~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~ 92 (494)
..++||||+|+.+.+ ..++++||+||+++++++.++.+++++++++|++||+.|+.++..+|.++|+++++.|++++++
T Consensus 23 ~~~~~i~G~~~~~~~-~~~~v~nP~tg~~i~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~e 101 (495)
T 1wnd_A 23 QHKLLINGELVSGEG-EKQPVYNPATGDVLLEIAEASAEQVDAAVRAADAAFAEWGQTTPKVRAECLLKLADVIEENGQV 101 (495)
T ss_dssp CCCEEETTEEECCCS-CEEEEEETTTTEEEEEEECCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHH
T ss_pred ccCeEECCEEecCCC-CeEEEECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999997655 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCChHHHHH-HHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchHH
Q 011080 93 IAECLVKEIAKPAKDAVT-EVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVN 171 (494)
Q Consensus 93 l~~~~~~e~Gk~~~~a~~-ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~~ 171 (494)
|++++++|+|||+.+++. |+..+++.++++++.++++.++..+. ...+...++.++|+|||++|+|||||+.
T Consensus 102 la~~~~~e~Gk~~~ea~~~Ev~~~~~~~~~~a~~~~~~~g~~~~~-------~~~~~~~~~~~~P~GVV~~I~PwN~P~~ 174 (495)
T 1wnd_A 102 FAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGLAAGE-------YLEGHTSMIRRDPLGVVASIAPWNYPLM 174 (495)
T ss_dssp HHHHHHHHHCCCHHHHHHTHHHHHHHHHHHHHHHTTCCEEECBEE-------EETTEEEEEEEEECSEEEEECCSSSHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccC-------CCCCceeEEeeecCCeEEEECCCcchHH
Confidence 999999999999999998 99999999999998887765442211 0113456889999999999999999999
Q ss_pred HHHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHHH
Q 011080 172 LAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGISI 250 (494)
Q Consensus 172 ~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~v 250 (494)
+.++++++||++||+||+|||+.+|+++.+|+++|.++ +|+|++|+|+|++.+++..|++||+||.|+|||| .+|+.|
T Consensus 175 ~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~ea-lP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~i 253 (495)
T 1wnd_A 175 MAAWKLAPALAAGNCVVLKPSEITPLTALKLAELAKDI-FPAGVVNILFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHI 253 (495)
T ss_dssp HHHHHHHHHHHTTCEEEEECCTTCCHHHHHHHHHHTTT-SCTTSEEECCCCTTTTHHHHHTCTTEEEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHcCCeeEeeCCCCChHHHHHHHHHHHHh-CCcCeEEEEeCCCHHHHHHHHhCCCcCEEEEECcHHHHHHH
Confidence 99999999999999999999999999999999999999 9999999999987889999999999999999999 999999
Q ss_pred HHHcC--CCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccccCCC
Q 011080 251 SKKAG--MIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTVGAP 328 (494)
Q Consensus 251 ~~~a~--~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~g~p 328 (494)
.+.++ ++|+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||++++|+|+++|+++++++++|||
T Consensus 254 ~~~aa~~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~g~p 333 (495)
T 1wnd_A 254 ISHTASSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIYDTLVEKLGAAVATLKSGAP 333 (495)
T ss_dssp HHHHGGGTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHTTGGGGCSTTCCCEEEEETTTHHHHHHHHHHHHHTCCBCCT
T ss_pred HHHHHhcCCccccccCCCCeEEECCcCCHHHHHHHHHHHHHhcCCCCCCCCcEEEecchhHHHHHHHHHHHHHhccCCCC
Confidence 99874 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCCCCCCccCCHHHHHHHHHHHHHHHHcC-CEEe-ecc-c-CCCceeecEEEeeCCCCCCCcccccccceeeeEecCCH
Q 011080 329 -EDDCDITPVVTESSANFIEGLVMDAKQKA-ATFC-QEY-K-REGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSV 403 (494)
Q Consensus 329 -~~~~~~gpl~~~~~~~~~~~~i~~a~~~G-a~v~-~~~-~-~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~~ 403 (494)
++++++||++++.+++++.+++++++++| +++. +|. . ..|+|++|||+.+++++|++++||+||||++|++|+|+
T Consensus 334 ~~~~~~~Gpli~~~~~~rv~~~i~~a~~~G~a~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~ 413 (495)
T 1wnd_A 334 DDESTELGPLSSLAHLERVGKAVEEAKATGHIKVITGGEKRKGNGYYYAPTLLAGALQDDAIVQKEVFGPVVSVTPFDNE 413 (495)
T ss_dssp TSTTCCBCCCSCHHHHHHHHHHHHHHHHTSSCEEEECCSBCSSSSCCBCCEEEECCCTTSHHHHSCCCSSEEEEEEECCH
T ss_pred ccCCCCccCCCCHHHHHHHHHHHHHHHhCCCeEEEECCcccCCCCCeeCCEEEeCCCCCChhhhccccCceEEEEEeCCH
Confidence 78999999999999999999999999999 9996 443 2 26999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCCCcchHHHHHHhhceeEEE
Q 011080 404 EEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTV 483 (494)
Q Consensus 404 ~eai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~k~i~ 483 (494)
||||+++|+++|||+++|||+|.++++++++++++|+|+||++.... ..+||||+|.||+|+++|.+|+++|++.|+|+
T Consensus 414 deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~-~~~PfGG~k~SG~Gr~~G~~gl~~f~~~k~v~ 492 (495)
T 1wnd_A 414 EQVVNWANDSQYGLASSVWTKDVGRAHRVSARLQYGCTWVNTHFMLV-SEMPHGGQKLSGYGKDMSLYGLEDYTVVRHVM 492 (495)
T ss_dssp HHHHHHHHSSSCCSEEEEECSBHHHHHHHHHHCCSSEEEESCCCCCC-TTSCBCCSGGGEECCBSHHHHHHTTEEEEEEE
T ss_pred HHHHHHHhcCCCCeeEEEECCCHHHHHHHHHhCCcceEEECCCCCCC-CCCCCCCCCcCcCCccchHHHHHHhhCeEEEE
Confidence 99999999999999999999999999999999999999999876544 45999999999999999999999999999998
Q ss_pred Ee
Q 011080 484 IN 485 (494)
Q Consensus 484 ~~ 485 (494)
++
T Consensus 493 ~~ 494 (495)
T 1wnd_A 493 VK 494 (495)
T ss_dssp EE
T ss_pred ec
Confidence 75
No 26
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH, isomerization, oxidoreductase; HET: NAD; 1.42A {Homo sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A* 1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A* 3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A* 3n81_A 3n82_A* 3n83_A* ...
Probab=100.00 E-value=2.2e-101 Score=806.23 Aligned_cols=465 Identities=29% Similarity=0.463 Sum_probs=435.9
Q ss_pred ccceeCCeeeeCCCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhH---HhcCCCHHHHHHHHHHHHHHHHHcH
Q 011080 14 YKFFYDGVWRKSSSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQK---SWAKTPLWKRAELLHKAAAILKEQK 90 (494)
Q Consensus 14 ~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~ 90 (494)
.++||||+|+.+.++..++++||+||+++++++.++.+|+++++++|++||+ .|+.++..+|.++|+++++.|++++
T Consensus 20 ~~~~i~G~~~~~~~~~~~~v~nP~tg~~i~~~~~~~~~~v~~av~~A~~A~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~ 99 (500)
T 1o04_A 20 NQIFINNEWHDAVSRKTFPTVNPSTGEVICQVAEGDKEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDR 99 (500)
T ss_dssp CSEEETTEEECCTTCCEEEEEETTTTEEEEEEECBCHHHHHHHHHHHHHHTSTTSHHHHSCHHHHHHHHHHHHHHHHHTH
T ss_pred cCeeECCEEecCCCCCeEEEECCCCCCEEEEEeCCCHHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 3589999999876678899999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHhCCChHHHH-HHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCch
Q 011080 91 APIAECLVKEIAKPAKDAV-TEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYP 169 (494)
Q Consensus 91 ~~l~~~~~~e~Gk~~~~a~-~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P 169 (494)
++|++++++|+|||+.++. .|+..+++.++++++.++++.+.... . ..+...++.++|+|||++|+|||||
T Consensus 100 ~ela~~~~~e~Gk~~~ea~~~ev~~~~~~~~~~a~~~~~~~g~~~~-------~-~~~~~~~~~~~P~GVv~~I~PwN~P 171 (500)
T 1o04_A 100 TYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIP-------I-DGDFFSYTRHEPVGVCGQIIPWNFP 171 (500)
T ss_dssp HHHHHHHHHHHCCCHHHHHHTHHHHHHHHHHHHHHHTTTCCEEEEC-------C-SSSEEEEEEEEECCEEEEECCSSSH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCccee-------c-CCCceEEEEEecCCcEEEECCCCch
Confidence 9999999999999999875 69999999999999988776654211 1 1234678999999999999999999
Q ss_pred HHHHHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHH
Q 011080 170 VNLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGI 248 (494)
Q Consensus 170 ~~~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~ 248 (494)
+.+.++++++||++||+||+|||+.+|+++.+|+++|.++|+|+|++|+|+|++.+++..|++||+|+.|+|||| .+|+
T Consensus 172 ~~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~I~FTGS~~~G~ 251 (500)
T 1o04_A 172 LLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGSTEIGR 251 (500)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHHTCCTTSEEECCBCTTTHHHHHHTCTTCCEEEEESCHHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEECCccChHHHHHHHHHHHHhCCCcCeEEEEecCcHHHHHHHHhCCCcCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999999999999999999987889999999999999999999 9999
Q ss_pred HHHHHcC---CCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhcccc
Q 011080 249 SISKKAG---MIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTV 325 (494)
Q Consensus 249 ~v~~~a~---~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~ 325 (494)
.|.+.++ ++|+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||++++|+|+++|+++++++++
T Consensus 252 ~i~~~aa~~~l~pv~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~ 331 (500)
T 1o04_A 252 VIQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCSCAGSRTFVQEDIYDEFVERSVARAKSRVV 331 (500)
T ss_dssp HHHHHHHHTTCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHHHHHHHHHHHHHHHHCCB
T ss_pred HHHHhhhhhcCceEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhccCCCCCCCCCEEEEehhHHHHHHHHHHHHHHhCcC
Confidence 9988754 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCCCCCCccCCHHHHHHHHHHHHHHHHcCCEEe-eccc--CCCceeecEEEeeCCCCCCCcccccccceeeeEecC
Q 011080 326 GAP-EDDCDITPVVTESSANFIEGLVMDAKQKAATFC-QEYK--REGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRIN 401 (494)
Q Consensus 326 g~p-~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~-~~~~--~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~ 401 (494)
||| ++++++||++++.+++++.+++++++++|+++. +|.. ..|+|++|||+.+++++|++++||+||||++|++|+
T Consensus 332 G~p~~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~ 411 (500)
T 1o04_A 332 GNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFK 411 (500)
T ss_dssp CCTTSTTCSBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCSBCCSSSSCBCCEEEESCCTTSHHHHSCCCSSEEEEEEEC
T ss_pred CCcccccCccCcccCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCCeeCCEEEeCCCCCChhhhCcccceEEEEEeeC
Confidence 999 789999999999999999999999999999995 4432 259999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCCCcchHHHHHHhhceeE
Q 011080 402 SVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKS 481 (494)
Q Consensus 402 ~~~eai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~k~ 481 (494)
|+||||+++|+++|||+++|||+|.++++++++++++|+|+||++.... ..+||||+|.||+|+++|.+|+++|++.|+
T Consensus 412 ~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~-~~~PfGG~k~SG~G~~~G~~gl~~f~~~K~ 490 (500)
T 1o04_A 412 TIEEVVGRANNSTYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFG-AQSPFGGYKMSGSGRELGEYGLQAYTEVKT 490 (500)
T ss_dssp CHHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHCCSSEEEESCSSCCC-TTSCBCCSGGGEESCBSTGGGGGGGEEEEE
T ss_pred CHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHhCCeeEEEECCCCCCC-CCCCCCCcCCCCCCccchHHHHHHhcceEE
Confidence 9999999999999999999999999999999999999999999876544 459999999999999999999999999999
Q ss_pred EEEecC
Q 011080 482 TVINLP 487 (494)
Q Consensus 482 i~~~~~ 487 (494)
|++++.
T Consensus 491 v~~~~~ 496 (500)
T 1o04_A 491 VTVKVP 496 (500)
T ss_dssp EEEECS
T ss_pred EEEecC
Confidence 998753
No 27
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox control, apoptosis, NAD binding, oxidoreductase, PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Probab=100.00 E-value=6.8e-101 Score=808.40 Aligned_cols=466 Identities=29% Similarity=0.476 Sum_probs=433.9
Q ss_pred cccceeCCeeeeCCCCCeEEeeCCCC-CCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHH
Q 011080 13 VYKFFYDGVWRKSSSGKSVTIINPTT-RKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKA 91 (494)
Q Consensus 13 ~~~~~i~g~~~~~~~~~~~~v~~P~t-g~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ 91 (494)
.+++||||+|+. ++..++++||+| |+++++++.++.+|+++|+++|++||+.|+.++..+|.++|+++++.|+++++
T Consensus 37 ~~~~~I~G~~~~--~~~~~~~~nP~t~~~~i~~~~~~~~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ 114 (538)
T 3qan_A 37 EYPLIINGERVT--TEDKIQSWNPARKDQLVGSVSKANQDLAEKAIQSADEAFQTWRNVNPEERANILVKAAAIIRRRKH 114 (538)
T ss_dssp EECEEETTEEEC--CSSEEEEECSSSTTCEEEEEECBCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHH
T ss_pred ccceeECCEEec--CCCeEEEECCCCCCcEEEEEcCCCHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 578999999987 568899999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchHH
Q 011080 92 PIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVN 171 (494)
Q Consensus 92 ~l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~~ 171 (494)
+|++++++|+|||+.+++.|+..+++.+++++..+.++..... .+. ..+...++.++|+|||++|+|||||+.
T Consensus 115 ela~~~~~e~Gk~~~ea~~Ev~~~~~~l~~~a~~~~~~~~~~~------~~~-~~~~~~~~~~~P~GVV~~I~PwN~P~~ 187 (538)
T 3qan_A 115 EFSAWLVHEAGKPWKEADADTAEAIDFLEYYARQMIELNRGKE------ILS-RPGEQNRYFYTPMGVTVTISPWNFALA 187 (538)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCBC------CCC-CTTEEEEEEEEECCEEEEECCSTTTTH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCee------ecc-cCCcceeeecCCCcEEEEECCCchHHH
Confidence 9999999999999999999999999999999988444332211 111 125678899999999999999999999
Q ss_pred HHHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHHH
Q 011080 172 LAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGISI 250 (494)
Q Consensus 172 ~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~v 250 (494)
+.++++++||++||+||+|||+.+|+++.+|++++.++|+|+|++|+|+|++.+++..|++||+|+.|+|||| .+|+.|
T Consensus 188 ~~~~~~a~ALaaGN~VVlKps~~tp~ta~~l~~l~~eaGlP~gvv~vv~g~~~~~g~~L~~~p~v~~I~FTGS~~~G~~i 267 (538)
T 3qan_A 188 IMVGTAVAPIVTGNTVVLKPASTTPVVAAKFVEVLEDAGLPKGVINYVPGSGAEVGDYLVDHPKTSLITFTGSKDVGVRL 267 (538)
T ss_dssp HHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCCTTSEEECCBCTTTTHHHHHHCTTEEEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEECCCccHHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHhCCCcCEEEEECCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988889999999999999999999 999999
Q ss_pred HHHcC--------CCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhc
Q 011080 251 SKKAG--------MIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAK 322 (494)
Q Consensus 251 ~~~a~--------~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~ 322 (494)
.+.++ ++|+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||++++|+|+++|++++++
T Consensus 268 ~~~aa~~~~~~~~lkpv~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~ 347 (538)
T 3qan_A 268 YERAAVVRPGQNHLKRVIVEMGGKDTVVVDRDADLDLAAESILVSAFGFSGQKCSAGSRAVIHKDVYDEVLEKTVALAKN 347 (538)
T ss_dssp HHHHTSCCTTCCSCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCCCEEEEETTTHHHHHHHHHHHHTT
T ss_pred HHHhhhccccccccccEEEecCCCCceEECCCCCHHHHHHHHHHHHHhcCCCCCccCceeEEehHHHHHHHHHHHHHHHh
Confidence 98873 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCC-CCCCCCCccCCHHHHHHHHHHHHHHHHcCCEEe-eccc--CCCceeecEEEeeCCCCCCCcccccccceeeeE
Q 011080 323 LTVGAP-EDDCDITPVVTESSANFIEGLVMDAKQKAATFC-QEYK--REGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVI 398 (494)
Q Consensus 323 ~~~g~p-~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~-~~~~--~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~ 398 (494)
+++||| ++++++||++++.+.+++.++|++++++| +++ +|.. ..|+|++|||+.+++++|++++||+||||++|+
T Consensus 348 ~~vG~p~~~~~~~Gpli~~~~~~rv~~~i~~a~~~G-~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~V~ 426 (538)
T 3qan_A 348 LTVGDPTNRDNYMGPVIDEKAFEKIMSYIEIGKKEG-RLMTGGEGDSSTGFFIQPTIIADLDPEAVIMQEEIFGPVVAFS 426 (538)
T ss_dssp CCBSCTTSTTCSBCCCSCHHHHHHHHHHHHHHHHHS-EEEECCCEECSSSCEECCEEEESCCTTSHHHHSCCCSSEEEEE
T ss_pred ccCCCCCCCCCCCcCccCHHHHHHHHHHHHHHHHCC-eEEeCCCcCCCCCceeCCeeeecCCCCChhhCCCcCCcEEEEE
Confidence 999999 78999999999999999999999999999 885 4432 269999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECC-CCCCCCCCCCccCccCCCCC-CcchHHHHHHh
Q 011080 399 RINSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINS-APSRGPDHFPFQGLKDSGIG-SQGITNSINMM 476 (494)
Q Consensus 399 ~~~~~~eai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~-~~~~~~~~~pfgG~~~SG~g-~~~g~~~l~~~ 476 (494)
+|+|+||||+++|+++|||+++|||+|.++++++++++++|+|+||+ ........+||||+|+||+| +++|.+|+++|
T Consensus 427 ~~~~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~~~PfGG~k~SG~G~~~~G~~gl~~f 506 (538)
T 3qan_A 427 KANDFDHALEIANNTEYGLTGAVITRNRAHIEQAKREFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDSKAGGPDYLALH 506 (538)
T ss_dssp EESSHHHHHHHHHCSSEESEEEEECSCHHHHHHHHHHCCCSEEEESSCSCCCCTTTSCBCCEETTBSCCCBTSTTTGGGG
T ss_pred EeCCHHHHHHHHhcCCCCcEEEEECCCHHHHHHHHHhCCeeEEEEeCCCCCCCCCCCCcCCcCcCCCCcccccHHHHHHh
Confidence 99999999999999999999999999999999999999999999995 44333556999999999999 99999999999
Q ss_pred hceeEEEEecCC
Q 011080 477 TKIKSTVINLPT 488 (494)
Q Consensus 477 ~~~k~i~~~~~~ 488 (494)
++.|+|+++...
T Consensus 507 t~~k~v~~~~~~ 518 (538)
T 3qan_A 507 MQAKTVSEMYAE 518 (538)
T ss_dssp EEEEEEEEEC--
T ss_pred hCeEEEEEecCC
Confidence 999999998643
No 28
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase; 1.82A {Streptococcus mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A* 2qe0_A* 2esd_A* 1qi1_A*
Probab=100.00 E-value=1.3e-100 Score=798.45 Aligned_cols=463 Identities=51% Similarity=0.826 Sum_probs=433.9
Q ss_pred cccceeCCeeeeCCCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHHH
Q 011080 13 VYKFFYDGVWRKSSSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKAP 92 (494)
Q Consensus 13 ~~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~ 92 (494)
.+++||||+|+.+.+ .++++||+||+++++++.++.+++++++++|++||+.|+.+|..+|.++|+++++.|++++++
T Consensus 4 ~~~~~i~g~~~~~~~--~~~~~~P~tg~~i~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~e 81 (475)
T 1euh_A 4 QYKNYVNGEWKLSEN--EIKIYEPASGAELGSVPAMSTEEVDYVYASAKKAQPAWRALSYIERAAYLHKVADILMRDKEK 81 (475)
T ss_dssp BCCEEETTEEECCSS--EEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHH
T ss_pred ccceeECCEEecCCC--ceEEECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhHHH
Confidence 467899999997533 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCC----ceE-EEEeeeceeEEeeCCCC
Q 011080 93 IAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERT----KYC-LTSKIPLGVVLAIPPFN 167 (494)
Q Consensus 93 l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~P~GVv~~i~p~n 167 (494)
|++++++|+|||+.+++.|+..+++.+++++..++++.+..... . ..+ ... ++.++|+|||++|+|||
T Consensus 82 la~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~P~GVv~~I~PwN 154 (475)
T 1euh_A 82 IGAILSKEVAKGYKSAVSEVVRTAEIINYAAEEGLRMEGEVLEG--G-----SFEAASKKKIAVVRREPVGLVLAISPFN 154 (475)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEG--G-----GTCGGGTTEEEEEEEEECSEEEEECCTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC--C-----CCCccccceeeEEEEeccceEEEECCCC
Confidence 99999999999999999999999999999998887766542111 0 112 355 88999999999999999
Q ss_pred chHHHHHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HH
Q 011080 168 YPVNLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DT 246 (494)
Q Consensus 168 ~P~~~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~ 246 (494)
||+.+.++++++||++||+||+|||+.+|+++.+|+++|.++|+|+|++|+++|++.++++.|+.||+++.|+|||| .+
T Consensus 155 ~P~~~~~~~~~~ALaaGN~vVlKps~~tp~t~~~l~~ll~~aGlP~gvv~vv~g~~~~~~~~L~~~~~v~~V~fTGS~~~ 234 (475)
T 1euh_A 155 YPVNLAGSKIAPALIAGNVIAFKPPTQGSISGLLLAEAFAEAGLPAGVFNTITGRGSEIGDYIVEHQAVNFINFTGSTGI 234 (475)
T ss_dssp STTHHHHHHHHHHHHTTCEEEEECCSTTHHHHHHHHHHHHHHTCCTTTEEECCCCHHHHHHHHHHCTTCCEEEEESCHHH
T ss_pred chHHHHHHHHHHHHHcCCEEEEeCCCcChHHHHHHHHHHHHhCCCcCeEEEEeCCcHHHHHHHHhCCCcCEEEEECchHH
Confidence 99999999999999999999999999999999999999999999999999999977788999999999999999999 99
Q ss_pred HHHHHHHcCCCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccccC
Q 011080 247 GISISKKAGMIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTVG 326 (494)
Q Consensus 247 ~~~v~~~a~~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~g 326 (494)
|+.+.+.++++|+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||++++|+|+++|+++++++++|
T Consensus 235 g~~i~~~aa~~~v~lElGGk~p~iV~~dADl~~aa~~i~~~~~~n~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~g 314 (475)
T 1euh_A 235 GERIGKMAGMRPIMLELGGKDSAIVLEDADLELTAKNIIAGAFGYSGQRCTAVKRVLVMESVADELVEKIREKVLALTIG 314 (475)
T ss_dssp HHHHHHHTTTSCEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCSSSEEEEEEEHHHHHHHHHHHHHHHHTSCBS
T ss_pred HHHHHHhcCCCcEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhhcCCCcCCCCcEEEEehhHHHHHHHHHHHHHHhccCC
Confidence 99999987789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCCCCCccCCHHHHHHHHHHHHHHHHcCCEEeecccCCCceeecEEEeeCCCCCCCcccccccceeeeEecCCHHH
Q 011080 327 AP-EDDCDITPVVTESSANFIEGLVMDAKQKAATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEE 405 (494)
Q Consensus 327 ~p-~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~~~~~~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~~~e 405 (494)
|| + ++++||++++.+++++.+++++++++|+++..++...|+|++|||+.+++++|++++||+||||++|++|+|+||
T Consensus 315 ~p~~-~~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gG~~~g~~~~Ptvl~~v~~~~~~~~eE~FGPvl~v~~~~~~~e 393 (475)
T 1euh_A 315 NPED-DADITPLIDTKSADYVEGLINDANDKGATALTEIKREGNLICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEE 393 (475)
T ss_dssp CGGG-TCSBCCCSCHHHHHHHHHHHHHHHHTTCEECSCCCEETTEECCEEEESCCTTSGGGTSCCCSSEEEEEEESCHHH
T ss_pred Cccc-cCccCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCccCCceeCCEEEeCCCCcCHHHcCccccceEEEEecCCHHH
Confidence 99 6 999999999999999999999999999999644333689999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECC-CCCCCCCCCCccCccCCCCCCcchHHHHHHhhceeEEEE
Q 011080 406 GIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINS-APSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVI 484 (494)
Q Consensus 406 ai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~-~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~k~i~~ 484 (494)
||+++|+++|||+++|||+|.++++++++++++|+|+||+ +... ...+||||+|+||+|+++|.+|+++|++.|+|++
T Consensus 394 ai~~an~~~~gL~a~v~t~d~~~~~~~~~~l~~G~v~vN~~~~~~-~~~~pfGG~k~SG~G~~~g~~~~~~~~~~k~v~~ 472 (475)
T 1euh_A 394 AIEISNKSEYGLQASIFTNDFPRAFGIAEQLEVGTVHINNKTQRG-TDNFPFLGAKKSGAGIQGVKYSIEAMTTVKSVVF 472 (475)
T ss_dssp HHHHHHHSSEESEEEEECSCHHHHHHHHHHSCSSEEEESSCCCCC-STTSCBCCEETTEESCBSHHHHHHHTEEEEEEEE
T ss_pred HHHHHhCCCCCeeEEEEeCCHHHHHHHHHhCCEeeEEECCCCCCC-CCCCCcCCCCCCCcCCCccHHHHHHhCCeeEEEE
Confidence 9999999999999999999999999999999999999998 5544 3569999999999999999999999999999987
Q ss_pred ec
Q 011080 485 NL 486 (494)
Q Consensus 485 ~~ 486 (494)
++
T Consensus 473 ~~ 474 (475)
T 1euh_A 473 DI 474 (475)
T ss_dssp EC
T ss_pred ec
Confidence 63
No 29
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH, glucose 1-phosphate, glycolysis, regulation, catatysis, oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A*
Probab=100.00 E-value=1.2e-100 Score=801.56 Aligned_cols=469 Identities=32% Similarity=0.486 Sum_probs=435.1
Q ss_pred cccceeCCeeeeCCCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhH-HhcCCCHHHHHHHHHHHHHHHHHcHH
Q 011080 13 VYKFFYDGVWRKSSSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQK-SWAKTPLWKRAELLHKAAAILKEQKA 91 (494)
Q Consensus 13 ~~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~-~w~~~~~~~R~~~L~~~a~~l~~~~~ 91 (494)
.+++||||+|+.+. ..++++||+||+++++++.++.+|+++++++|++||+ .|+.+|..+|.++|+++++.|+++++
T Consensus 18 ~~~~~i~g~~~~~~--~~~~v~nP~tg~~i~~~~~~~~~~v~~av~~A~~A~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ 95 (501)
T 1uxt_A 18 VYPSYLAGEWGGSG--QEIEVKSPIDLATIAKVISPSREEVERTLDVLFKRGRWSARDMPGTERLAVLRKAADIIERNLD 95 (501)
T ss_dssp EECEECSSSEECCS--CEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHTHHHHHHTSCHHHHHHHHHHHHHHHHHTHH
T ss_pred ccceeECCEEecCC--CeEEEECCCCCCEEEEEeCCCHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhHH
Confidence 56789999999753 6899999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchHH
Q 011080 92 PIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVN 171 (494)
Q Consensus 92 ~l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~~ 171 (494)
+|++++++|+|||+.+++.|+..+++.+++++..++++.+.... ....+. ..+...++.++|+|||++|+|||||+.
T Consensus 96 ela~~~~~e~Gk~~~ea~~Ev~~~~~~l~~~a~~~~~~~g~~~~--~~~~~~-~~~~~~~~~~~P~GVv~~I~PwN~P~~ 172 (501)
T 1uxt_A 96 VFAEVLVMNAGKPKSAAVGEVKAAVDRLRLAELDLKKIGGDYIP--GDWTYD-TLETEGLVRREPLGVVAAITPFNYPLF 172 (501)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHTGGGGGGGTCCEEEE--STTSST-TTTEEEEEEEEECSEEEEECCTTSTTH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc--ccccCC-CcCceEEEEEeeccEEEEECCCccHHH
Confidence 99999999999999999999999999999998877776443211 100010 002367899999999999999999999
Q ss_pred HHHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHHH
Q 011080 172 LAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGISI 250 (494)
Q Consensus 172 ~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~v 250 (494)
+.++++++||++||+||+|||+.+|+++.+|+++|.++|+|+|++|+++|++ +++..|++||++|.|+|||| .+|+.+
T Consensus 173 ~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~eaGlP~gvv~vv~g~~-~~g~~L~~~~~vd~I~FTGS~~~G~~i 251 (501)
T 1uxt_A 173 DAVNKITYSFIYGNAVVVKPSISDPLPAAMAVKALLDAGFPPDAIALLNLPG-KEAEKIVADDRVAAVSFTGSTEVGERV 251 (501)
T ss_dssp HHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHTTCCTTSEEECCCCH-HHHHHHHTCTTCCEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCchHHHHHHHHHHHHhCCCcCeEEEEeCCc-HHHHHHHhCCCcCEEEEeCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999977 88999999999999999999 999999
Q ss_pred HHHcCCCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccccCCC-C
Q 011080 251 SKKAGMIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTVGAP-E 329 (494)
Q Consensus 251 ~~~a~~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~g~p-~ 329 (494)
.+.++++|+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||++++|+|+++|+++++++++||| +
T Consensus 252 ~~~aal~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~g~p~~ 331 (501)
T 1uxt_A 252 VKVGGVKQYVMELGGGDPAIVLEDADLDLAADKIARGIYSYAGQRCDAIKLVLAERPVYGKLVEEVAKRLSSLRVGDPRD 331 (501)
T ss_dssp HHHHCSSEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEHHHHHHHHHHHHHHHHTCCBSCTTS
T ss_pred HHhcCCCeEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhcCCCCCCcCCcEEEeccchHHHHHHHHHHHHHhccCCCccc
Confidence 998879999999999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHcCCEEeecccCCC-ceeecEEEeeCC---CCCCCcccccccceeeeEecCCHHH
Q 011080 330 DDCDITPVVTESSANFIEGLVMDAKQKAATFCQEYKREG-NLIWPLLLDNVR---PDMRIAWEEPFGPVLPVIRINSVEE 405 (494)
Q Consensus 330 ~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~~~~~~~g-~~~~Ptvl~~~~---~~~~~~~~E~fgPvl~v~~~~~~~e 405 (494)
+++++||++++.+.+++.+++++++++|++++.++...| +|++|||+.+++ ++|++++||+||||++|++|+|+||
T Consensus 332 ~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~g~~~~~Ptvl~~v~~~~~~~~i~~eEiFGPVl~v~~~~~~de 411 (501)
T 1uxt_A 332 PTVDVGPLISPSAVDEMMAAIEDAVEKGGRVLAGGRRLGPTYVQPTFVEAPADRVKDMVLYKREVFAPVALAVEVKDLDQ 411 (501)
T ss_dssp TTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCBCSSSCBCCEEEECCHHHHTTSHHHHSCCCSSEEEEEEESSHHH
T ss_pred cCCcccCCCCHHHHHHHHHHHHHHHHCCCEEEeCCccCCCceECCEEEeCCCCCCCcCHHHhCcccCceEEEEeeCCHHH
Confidence 899999999999999999999999999999954433368 999999999999 9999999999999999999999999
Q ss_pred HHHHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCCCcchHHHHHHhhceeEEEEe
Q 011080 406 GIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVIN 485 (494)
Q Consensus 406 ai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~k~i~~~ 485 (494)
||+++|+++|||+++|||+|.++++++++++++|+|+||+++......+||||+|+||+|+++|.+|+++|++.|+|+++
T Consensus 412 Ai~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~~G~V~iN~~~~~~~~~~PfGG~k~SG~G~~~G~~~l~~f~~~k~v~~~ 491 (501)
T 1uxt_A 412 AIELANGRPYGLDAAVFGRDVVKIRRAVRLLEVGAIYINDMPRHGIGYYPFGGRKKSGVFREGIGYAVEAVTAYKTIVFN 491 (501)
T ss_dssp HHHHHHTSSEESEEEEECCCHHHHHHHHHHCCSSEEEETSCCCCTTSSSCBCCEETTEESCBSTTTTHHHHEEEEEEEEE
T ss_pred HHHHHhcCCCCcEEEEeCCCHHHHHHHHHhCCEeeEEEeCCCCCCCCCCCCCCcCCCCCCccChHHHHHHhCceeEEEEe
Confidence 99999999999999999999999999999999999999987332345699999999999999999999999999999987
Q ss_pred cC
Q 011080 486 LP 487 (494)
Q Consensus 486 ~~ 487 (494)
+.
T Consensus 492 ~~ 493 (501)
T 1uxt_A 492 YK 493 (501)
T ss_dssp CT
T ss_pred cC
Confidence 53
No 30
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A*
Probab=100.00 E-value=3.4e-100 Score=796.23 Aligned_cols=463 Identities=29% Similarity=0.471 Sum_probs=433.2
Q ss_pred ccceeCCeeeeCCCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHHHH
Q 011080 14 YKFFYDGVWRKSSSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKAPI 93 (494)
Q Consensus 14 ~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l 93 (494)
.++||||+|+.+. ..++++||+||+++++++.++.+++++++++|++||+.|+.+|..+|.++|+++++.|++++++|
T Consensus 13 ~~~~i~g~~~~~~--~~~~~~~P~tg~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el 90 (487)
T 2w8n_A 13 TDSFVGGRWLPAA--ATFPVQDPASGAALGMVADCGVREARAAVRAAYEAFCRWREVSAKERSSLLRKWYNLMIQNKDDL 90 (487)
T ss_dssp CSEEETTEEECCS--CEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHH
T ss_pred cCeeECCEEecCC--CeEEEECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999753 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchHHHH
Q 011080 94 AECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLA 173 (494)
Q Consensus 94 ~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~~~~ 173 (494)
++++++|+|||+.+++.|+..+++.++++++.+++..+... +....+...++.++|+|||++|+|||||+.+.
T Consensus 91 a~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~~~~~~g~~~-------~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~ 163 (487)
T 2w8n_A 91 ARIITAESGKPLKEAHGEILYSAFFLEWFSEEARRVYGDII-------HTPAKDRRALVLKQPIGVAAVITPWNFPSAMI 163 (487)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHGGGCCCEEE-------CCSCTTCEEEEEEEECCEEEEECCSSSTTHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-------ccCCCCceeEEEEecceEEEEECCCcchHHHH
Confidence 99999999999999999999999999999988776443321 11112456789999999999999999999999
Q ss_pred HhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEec---CCchhhHhhhhhCCCccEEEEecc-HHHHH
Q 011080 174 VSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVT---GKGSEIGDFLTMHPSINCISFTGG-DTGIS 249 (494)
Q Consensus 174 ~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~---g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~ 249 (494)
++++++||++||+||+|||+.+|+++..|+++|.++|+|+|++|+|+ |++.++++.|++||+|+.|+|||| .+|+.
T Consensus 164 ~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~~~~g~~~~~~~~L~~~~~v~~V~fTGS~~~g~~ 243 (487)
T 2w8n_A 164 TRKVGAALAAGCTVVVKPAEDTPFSALALAELASQAGIPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKI 243 (487)
T ss_dssp HHHHHHHHHHTCEEEEECCTTCCHHHHHHHHHHHHHTCCTTSEEECCCCHHHHHHHHHHHTTCTTEEEEEEEECHHHHHH
T ss_pred HHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHhCCCCCeEEEEecCCCCcHHHHHHHHhCCCcCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999 867788999999999999999999 99999
Q ss_pred HHHHc--CCCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhc-cccC
Q 011080 250 ISKKA--GMIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAK-LTVG 326 (494)
Q Consensus 250 v~~~a--~~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~-~~~g 326 (494)
|.+.+ +++|+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||++++|+|+++|++++++ +++|
T Consensus 244 i~~~aa~~~~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~~G 323 (487)
T 2w8n_A 244 LLHHAANSVKRVSMELGGLAPFIVFDSANVDQAVAGAMASKFRNTGQTCVCSNQFLVQRGIHDAFVKAFAEAMKKNLRVG 323 (487)
T ss_dssp HHHHHHTTTCEEEEEECEEEEEEECTTSCHHHHHHHHHHHHTCCCSCCCSEEEEEEEEHHHHHHHHHHHHHHHHHHCCBS
T ss_pred HHHHHhccCCcEEEecCCCCeEEECCCCCHHHHHHHHHHHHHhCCCCccccCCEEEEcccHHHHHHHHHHHHHHhhcccC
Confidence 99877 48999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CC-CCCCCCCccCCHHHHHHHHHHHHHHHHcCCEEeeccc--CCCc-eeecEEEeeCCCCCCCcccccccceeeeEecCC
Q 011080 327 AP-EDDCDITPVVTESSANFIEGLVMDAKQKAATFCQEYK--REGN-LIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINS 402 (494)
Q Consensus 327 ~p-~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~~~~~--~~g~-~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~ 402 (494)
|| ++++++||++++.+++++.+++++++++|+++..++. ..|+ |++|||+.+++++|++++||+||||++|++|+|
T Consensus 324 ~p~~~~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gg~~~~~g~~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~ 403 (487)
T 2w8n_A 324 NGFEEGTTQGPLINEKAVEKVEKQVNDAVSKGATVVTGGKRHQLGKNFFEPTLLCNVTQDMLCTHEETFGPLAPVIKFDT 403 (487)
T ss_dssp CTTSTTCCBCCCSSHHHHHHHHHHHHHHHTTTCEEEECCSBCTTCTTCBCCEEEEEECGGGGTTCTTCCSSEEEEEEESC
T ss_pred CcccccCcccCCCCHHHHHHHHHHHHHHHHCCCEEEeCCccCCCCCceECCEEEecCCCcchhhhcccccceEEEEEeCC
Confidence 99 8899999999999999999999999999999964433 2588 999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCCCcchHHHHHHhhceeEE
Q 011080 403 VEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKST 482 (494)
Q Consensus 403 ~~eai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~k~i 482 (494)
+||||+++|+++|||+++|||+|.+.++++++++++|+|+||++....+ .+||||+|.||+|+++|.+|+++|++.|+|
T Consensus 404 ~~eAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~-~~PfGG~~~SG~G~~~G~~~l~~f~~~k~v 482 (487)
T 2w8n_A 404 EEEAIAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSV-ECPFGGVKQSGLGREGSKYGIDEYLELKYV 482 (487)
T ss_dssp HHHHHHHHTCTTCCSEEEEECCCHHHHHHHHHHSCSSEEEESCSCCCCT-TSCBCCSGGGEESCBSTTTGGGGGEEEEEE
T ss_pred HHHHHHHHhCCCCCceEEEeCCCHHHHHHHHHhCCeeeEEEcCCCCCCC-CCCCCCCCCCCcCCCchHHHHHHhcCccEE
Confidence 9999999999999999999999999999999999999999999876544 499999999999999999999999999999
Q ss_pred EEec
Q 011080 483 VINL 486 (494)
Q Consensus 483 ~~~~ 486 (494)
+++.
T Consensus 483 ~~~~ 486 (487)
T 2w8n_A 483 CYGG 486 (487)
T ss_dssp EECC
T ss_pred EEec
Confidence 8753
No 31
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=1.2e-99 Score=792.59 Aligned_cols=469 Identities=29% Similarity=0.477 Sum_probs=434.7
Q ss_pred cccceeCCeeeeCCCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHHH
Q 011080 13 VYKFFYDGVWRKSSSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKAP 92 (494)
Q Consensus 13 ~~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~ 92 (494)
.+++||||+|+.+.++..++++||+||+++++++.++.+++++++++|++||+.|+.+|..+|.++|+++++.|++++++
T Consensus 5 ~~~~~i~g~~~~~~~~~~~~~~~P~t~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~e 84 (486)
T 1t90_A 5 KLKNYINGEWVESKTDQYEDVVNPATKEVLCQVPISTKEDIDYAAQTAAEAFKTWSKVAVPRRARILFNFQQLLSQHKEE 84 (486)
T ss_dssp BCCEEETTEEECCSCSCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccceeECCEEecCCCCCeEEEECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999876678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchHHH
Q 011080 93 IAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNL 172 (494)
Q Consensus 93 l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~~~ 172 (494)
|++++++|+|||+.+++.|+..+++.+++++.......++.... ...+...++.++|+|||++|+|||||+.+
T Consensus 85 la~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~~~~g~~~~~-------~~~~~~~~~~~~P~GVV~~I~PwN~P~~~ 157 (486)
T 1t90_A 85 LAHLITIENGKNTKEALGEVGRGIENVEFAAGAPSLMMGDSLAS-------IATDVEAANYRYPIGVVGGIAPFNFPMMV 157 (486)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTHHHHHCEEEEEE-------EETTEEEEEEEEECSEEEEECCSSCTTHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc-------CCCCceeEEEecccCEEEEECCCchhHHH
Confidence 99999999999999999999999999999886555544432110 01134568899999999999999999999
Q ss_pred HHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHHHH
Q 011080 173 AVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGISIS 251 (494)
Q Consensus 173 ~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~v~ 251 (494)
.++++++||++||+||+|||+.+|+++.+|+++|.++|+|+|++|+++| +.+++..|++||+|+.|+|||| .+|+.|.
T Consensus 158 ~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g-~~~~~~~L~~~~~v~~I~fTGS~~~g~~i~ 236 (486)
T 1t90_A 158 PCWMFPMAIALGNTFILKPSERTPLLTEKLVELFEKAGLPKGVFNVVYG-AHDVVNGILEHPEIKAISFVGSKPVGEYVY 236 (486)
T ss_dssp HHHHHHHHHHTTCEEEEECCSSSCHHHHHHHHHHHHTTCCTTSEEECCC-SHHHHHHHHHCTTEEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHhCCCCCEEEEEEC-CHHHHHHHHhCCCCCEEEEeCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 5678999999999999999999 9999998
Q ss_pred HHc--CCCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccE-EEEccchHHHHHHHHHHHHhccccCCC
Q 011080 252 KKA--GMIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKV-ALVMESVADTLVEKVKAKVAKLTVGAP 328 (494)
Q Consensus 252 ~~a--~~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~-v~V~~~~~~~f~~~l~~~~~~~~~g~p 328 (494)
+.+ .++|+++|+|||||+||++|||++.|++.+++++|.|+||.|++++| ||||++ +|+|+++|+++++++++|+|
T Consensus 237 ~~aa~~~~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvv~v~~~-~d~f~~~l~~~~~~~~vG~~ 315 (486)
T 1t90_A 237 KKGSENLKRVQSLTGAKNHTIVLNDANLEDTVTNIVGAAFGSAGERCMACAVVTVEEGI-ADEFMAKLQEKVADIKIGNG 315 (486)
T ss_dssp HHHHHTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHH-HHHHHHHHHHHHTTCCBSCT
T ss_pred HHHhccCCcEEeccCCCCcEEECCCCCHHHHHHHHHHHHHhCCCCCcccCCeeEEecCC-HHHHHHHHHHHHHhcccCCC
Confidence 876 48999999999999999999999999999999999999999999999 999999 99999999999999999999
Q ss_pred -CCCCCCCccCCHHHHHHHHHHHHHHHHcCCEEeeccc----CCCceeecEEEeeCCCCCCCcccccccceeeeEecCCH
Q 011080 329 -EDDCDITPVVTESSANFIEGLVMDAKQKAATFCQEYK----REGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSV 403 (494)
Q Consensus 329 -~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~~~~~----~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~~ 403 (494)
++++++||++++.+++++.+++++++++|+++..++. .+|+|++|||+.+++++|++++||+||||++|++|+|+
T Consensus 316 ~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~~g~~~~Ptvl~~v~~~~~~~~eEiFGPvl~v~~~~~~ 395 (486)
T 1t90_A 316 LDDGVFLGPVIREDNKKRTLSYIEKGLEEGARLVCDGRENVSDDGYFVGPTIFDNVTTEMTIWKDEIFAPVLSVIRVKNL 395 (486)
T ss_dssp TSTTCCBCCCSCHHHHHHHHHHHHHHHHHTCEEEECSSSSCCSSSSCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESSH
T ss_pred CccCCccCCCCCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCCCEECCEEEeCCCCCCHhhcCcccCceEEEEEeCCH
Confidence 8899999999999999999999999999999954332 36899999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCC--CcchHHHHHHhhceeE
Q 011080 404 EEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIG--SQGITNSINMMTKIKS 481 (494)
Q Consensus 404 ~eai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g--~~~g~~~l~~~~~~k~ 481 (494)
||||+++|+++|||+++|||+|.++++++++++++|+|+||++.......+||||+|+||+| +++|.+|+++|++.|+
T Consensus 396 ~eai~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~~PfGG~k~SG~G~~~~~g~~g~~~~~~~k~ 475 (486)
T 1t90_A 396 KEAIEIANKSEFANGACLFTSNSNAIRYFRENIDAGMLGINLGVPAPMAFFPFSGWKSSFFGTLHANGKDSVDFYTRKKV 475 (486)
T ss_dssp HHHHHHHHHSSEESEEEEECCBHHHHHHHHHHCCCSEEEESCSCCCCCTTSCCCCEETTEESSSCSSHHHHHHHTEEEEE
T ss_pred HHHHHHHhCCCCCeEEEEEcCCHHHHHHHHHhCCcCeEEECCCCCCCCCCCCcCCCCcCCCCCCccchHHHHHHhhceEE
Confidence 99999999999999999999999999999999999999999864433345899999999999 8999999999999999
Q ss_pred EEEecCCCC
Q 011080 482 TVINLPTPS 490 (494)
Q Consensus 482 i~~~~~~~~ 490 (494)
|+++++.+.
T Consensus 476 v~~~~~~~~ 484 (486)
T 1t90_A 476 VTARYPAPD 484 (486)
T ss_dssp EEEECCCCC
T ss_pred EEEecCCCC
Confidence 999876553
No 32
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase, oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo sapiens} PDB: 2jg7_A*
Probab=100.00 E-value=1.1e-99 Score=794.88 Aligned_cols=465 Identities=26% Similarity=0.396 Sum_probs=431.4
Q ss_pred CcccceeCCeeeeCCCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHH
Q 011080 12 GVYKFFYDGVWRKSSSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKA 91 (494)
Q Consensus 12 ~~~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ 91 (494)
..+++||||+|+. ++..++++||+||+++++++.++.+|+++++++|++||+.|+.++..+|.++|+++++.|+++++
T Consensus 22 ~~~~~~i~g~~~~--~~~~~~v~nP~tg~~i~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ 99 (500)
T 2j6l_A 22 EENEGVYNGSWGG--RGEVITTYCPANNEPIARVRQASVADYEETVKKAREAWKIWADIPAPKRGEIVRQIGDALREKIQ 99 (500)
T ss_dssp SEEECEESSSEEC--CSCEEEEEETTTTEEEEEEECCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHH
T ss_pred CCCCceECCEEec--CCCeEEEECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999994 56789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchHH
Q 011080 92 PIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVN 171 (494)
Q Consensus 92 ~l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~~ 171 (494)
+|+++++.|+|||+.+++.|+..+++.+++++...+++.+... +....+...++.++|+|||++|+|||||+.
T Consensus 100 ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~~~~~~g~~~-------~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~ 172 (500)
T 2j6l_A 100 VLGSLVSLEMGKILVEGVGEVQEYVDICDYAVGLSRMIGGPIL-------PSERSGHALIEQWNPVGLVGIITAFNFPVA 172 (500)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTTTCCCBEE-------CCSSTTEEEEEEEEECSEEEEECCSSSTTH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-------cccCCCceeEEEEecccEEEEECCCcchhh
Confidence 9999999999999999999999999999999887766544321 111123446788999999999999999999
Q ss_pred HHHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHH----HcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HH
Q 011080 172 LAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFH----LAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DT 246 (494)
Q Consensus 172 ~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~----~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~ 246 (494)
+.++++++||++||+||+|||+.+|+++.+|++++. ++|+|+|++|+|+| +.++++.|++||++|.|+|||| .+
T Consensus 173 ~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~al~~aGlP~gvv~vv~g-~~~~g~~L~~~~~vd~I~FTGS~~~ 251 (500)
T 2j6l_A 173 VYGWNNAIAMICGNVCLWKGAPTTSLISVAVTKIIAKVLEDNKLPGAICSLTCG-GADIGTAMAKDERVNLLSFTGSTQV 251 (500)
T ss_dssp HHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCGGGEEEECC-SHHHHHHHHHCTTCSEEEEESCHHH
T ss_pred HHHHHHHHHHHhCCEEEEECCCccHHHHHHHHHHHHHHHHhhcCCcCeEEEEeC-CHHHHHHHhcCCCcCEEEEECCHHH
Confidence 999999999999999999999999999999988765 56999999999999 7889999999999999999999 99
Q ss_pred HHHHHHHc--CCCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccc
Q 011080 247 GISISKKA--GMIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLT 324 (494)
Q Consensus 247 ~~~v~~~a--~~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~ 324 (494)
|+.|.+.+ +++|+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||++++|+|+++|++++++++
T Consensus 252 g~~i~~~aa~~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~ 331 (500)
T 2j6l_A 252 GKQVGLMVQERFGRSLLELGGNNAIIAFEDADLSLVVPSALFAAVGTAGQRCTTARRLFIHESIHDEVVNRLKKAYAQIR 331 (500)
T ss_dssp HHHHHHHHHHTTCEEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCSTTCEEEEEEETTTHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhccCCCceEEEcCCCCceEECCCCCHHHHHHHHHHHHHhcCCCCcCCCcEEEEcHHHHHHHHHHHHHHhhhcc
Confidence 99999876 5899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC-CCCCCCCccCCHHHHHHHHHHHHHHHHcCCEEe-eccc--CCCceeecEEEeeCCCCCCCcccccccceeeeEec
Q 011080 325 VGAP-EDDCDITPVVTESSANFIEGLVMDAKQKAATFC-QEYK--REGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRI 400 (494)
Q Consensus 325 ~g~p-~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~-~~~~--~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~ 400 (494)
+||| ++++++||++++.+++++.+++++++++|+++. +|.. ..|+|++|||+.+++++|++++||+||||++|++|
T Consensus 332 ~G~p~~~~~~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gg~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~ 411 (500)
T 2j6l_A 332 VGNPWDPNVLYGPLHTKQAVSMFLGAVEEAKKEGGTVVYGGKVMDRPGNYVEPTIVTGLGHDASIAHTETFAPILYVFKF 411 (500)
T ss_dssp BSCTTSTTCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCSSSSSCBCCEEEESCCTTCHHHHSCCSSSEEEEEEE
T ss_pred cCCcccCCCccccCCCHHHHHHHHHHHHHHHHCCCEEEECCcccCCCCCEEcCEEEECCCCcChhhcCcccCceEEEEee
Confidence 9999 789999999999999999999999999999985 4432 36899999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCCceEEEeccCHHHHHHHH--hhcccceEEECCCCCCCCCCCCccCccCCCCCCcchHHHHHHhhc
Q 011080 401 NSVEEGIHHCNASNFGLQGCVFTRDINKAILIS--DAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTK 478 (494)
Q Consensus 401 ~~~~eai~~~n~~~~gl~a~v~s~d~~~~~~~~--~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~ 478 (494)
+|+||||+++|+++|||+++|||+|.+++++++ .++++|+|+||+.+......+||||+|.||+|+++|.+|+++|++
T Consensus 412 ~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~~~~~~G~V~vN~~~~~~~~~~PfGG~k~SG~G~~~g~~~~~~f~~ 491 (500)
T 2j6l_A 412 QNEEEVFAWNNEVKQGLSSSIFTKDLGRIFRWLGPKGSDCGIVNVNIPTSGAEIGGAFGGEKHTGGGRESGSDAWKQYMR 491 (500)
T ss_dssp CCHHHHHHHHHTSSCCSEEEEECCCHHHHHHHHSTTSCCSSEEEESSCTTCCCTTSEECCSGGGCSCCEESTTGGGGGEE
T ss_pred CCHHHHHHHHhCCCCCcEEEEECCCHHHHHHHHhhccCCeeEEEECCCCccCCCCCCcCCcCCCCCCCcchHHHHHHhhc
Confidence 999999999999999999999999999999999 779999999998765444568999999999999999999999999
Q ss_pred eeEEEEec
Q 011080 479 IKSTVINL 486 (494)
Q Consensus 479 ~k~i~~~~ 486 (494)
.|+|++++
T Consensus 492 ~k~v~~~~ 499 (500)
T 2j6l_A 492 RSTCTINY 499 (500)
T ss_dssp EEEEEEEC
T ss_pred eEEEEEeC
Confidence 99998864
No 33
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.4A {Thermus thermophilus} SCOP: c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A* 2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A 2iy6_A* 2j40_A* 2j5n_A*
Probab=100.00 E-value=3e-99 Score=794.42 Aligned_cols=465 Identities=28% Similarity=0.493 Sum_probs=432.7
Q ss_pred cccceeCCeeeeCCCCCeEEeeCCC-CCCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHH
Q 011080 13 VYKFFYDGVWRKSSSGKSVTIINPT-TRKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKA 91 (494)
Q Consensus 13 ~~~~~i~g~~~~~~~~~~~~v~~P~-tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ 91 (494)
.+++||||+|+.+ +..++++||+ ||+++++++.++.+++++++++|++||+.|+.+|..+|.++|+++++.|+++++
T Consensus 37 ~~~~~i~G~~~~~--~~~~~~~nP~~t~~~i~~~~~~~~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ 114 (516)
T 1uzb_A 37 HYPLYIGGEWVDT--KERMVSLNPSAPSEVVGTTAKAGKAEAEAALEAAWKAFKTWKDWPQEDRSRLLLKAAALMRRRKR 114 (516)
T ss_dssp EECEEETTEEECC--SSEEEEEETTEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHH
T ss_pred ccceeECCEEecC--CCeEEEECCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999863 5789999999 699999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchHH
Q 011080 92 PIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVN 171 (494)
Q Consensus 92 ~l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~~ 171 (494)
+|++++++|+|||+.+++.|+..+++.+++++..++++.+..... . ...+...++.++|+|||++|+|||||+.
T Consensus 115 ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~~~~~~~~~~~~-----~-~~~~~~~~~~~~P~GVv~~I~PwN~P~~ 188 (516)
T 1uzb_A 115 ELEATLVYEVGKNWVEASADVAEAIDFIEYYARAALRYRYPAVEV-----V-PYPGEDNESFYVPLGAGVVIAPWNFPVA 188 (516)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHGGGCSSCCCC-----C-CCTTEEEEEEEEECCEEEEECCSSSTTH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc-----c-CCCCceEEEEEeccceEEEECCCccHHH
Confidence 999999999999999999999999999999999888776643210 0 1123567889999999999999999999
Q ss_pred HHHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHHH
Q 011080 172 LAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGISI 250 (494)
Q Consensus 172 ~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~v 250 (494)
+.++++++||++||+||+|||+.+|+++..|+++|.++|+|+|++|+|+|++.++++.|++||+|+.|+|||| .+|+.|
T Consensus 189 ~~~~~~a~ALaaGN~VVlKps~~tp~ta~~l~~l~~eaGlP~gvv~vv~g~~~~~~~~L~~~~~v~~I~FTGS~~~G~~i 268 (516)
T 1uzb_A 189 IFTGMIVGPVAVGNTVIAKPAEDAVVVGAKVFEIFHEAGFPPGVVNFLPGVGEEVGAYLVEHPRIRFINFTGSLEVGLKI 268 (516)
T ss_dssp HHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHHTCCTTSEEECCCSSSHHHHHHHTCTTCCEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHHHHhCCCcCeEEEEeCCCchhhhhhhcCCCcCEEEecCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999987889999999999999999999 999999
Q ss_pred HHHcC--------CCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhc
Q 011080 251 SKKAG--------MIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAK 322 (494)
Q Consensus 251 ~~~a~--------~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~ 322 (494)
.+.++ ++|+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||++++|+|+++|++++++
T Consensus 269 ~~~aa~~~~~~~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~ 348 (516)
T 1uzb_A 269 YEAAGRLAPGQTWFKRAYVETGGKNAIIVDETADFDLAAEGVVVSAYGFQGQKCSAASRLILTQGAYEPVLERVLKRAER 348 (516)
T ss_dssp HHHHTSCCTTCCSCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEHHHHHHHHHHHHHHHTT
T ss_pred HHHhhhccccccccceeEEecCCccceeECCCCCHHHHHHHHHHHHHhCCCCccccCcEEEEchHHHHHHHHHHHHHHHh
Confidence 98765 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCccCCHHHHHHHHHHHHHHHHcCCEE-eeccc--CCCceeecEEEeeCCCCCCCcccccccceeeeEe
Q 011080 323 LTVGAPEDDCDITPVVTESSANFIEGLVMDAKQKAATF-CQEYK--REGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIR 399 (494)
Q Consensus 323 ~~~g~p~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v-~~~~~--~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~ 399 (494)
+++|||++++++||++++.+++++.+++++++++| ++ ++|.. ..|+|++|||+.+++++|++++||+||||++|++
T Consensus 349 ~~~G~p~~~~~~Gpli~~~~~~~v~~~i~~a~~~G-~v~~gg~~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~ 427 (516)
T 1uzb_A 349 LSVGPAEENPDLGPVVSAEQERKVLSYIEIGKNEG-QLVLGGKRLEGEGYFIAPTVFTEVPPKARIAQEEIFGPVLSVIR 427 (516)
T ss_dssp CCBSCGGGCCSBCCCSCHHHHHHHHHHHHHHTTTS-EEEECCSBCSSSSCCBCCEEEESCCTTSGGGTSCCCSSEEEEEE
T ss_pred ccCCCCccccccCCCCCHHHHHHHHHHHHHHHHCC-CEEECCccCCCCCcEECCEEEECCCCCCHhhhccccCceEEEEE
Confidence 99999966899999999999999999999999999 76 45432 3699999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCC-CCCCCCccCccCCCCC-CcchHHHHHHhh
Q 011080 400 INSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSR-GPDHFPFQGLKDSGIG-SQGITNSINMMT 477 (494)
Q Consensus 400 ~~~~~eai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~-~~~~~pfgG~~~SG~g-~~~g~~~l~~~~ 477 (494)
|+|+||||+++|+++|||+++|||+|.++++++++++++|+|+||+.+.. ....+||||+|.||+| +++|.+++++|+
T Consensus 428 ~~~~~eAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~iN~~~~~~~~~~~PfGG~k~SG~G~~~~g~~~l~~f~ 507 (516)
T 1uzb_A 428 VKDFAEALEVANDTPYGLTGGVYSRKREHLEWARREFHVGNLYFNRKITGALVGVQPFGGFKLSGTNAKTGALDYLRLFL 507 (516)
T ss_dssp ESSHHHHHHHHHCSSCCSEEEEECSCHHHHHHHHHHSCCSEEEESSCSCCCCTTTSCBCCSGGGBSCCCBTSHHHHHTTE
T ss_pred eCCHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHhCCEeEEEEeCCCCCCCCCCCCCCCcCcCCCCCccchHHHHHHcC
Confidence 99999999999999999999999999999999999999999999987653 3345899999999999 479999999999
Q ss_pred ceeEEEEec
Q 011080 478 KIKSTVINL 486 (494)
Q Consensus 478 ~~k~i~~~~ 486 (494)
+.|+|++++
T Consensus 508 ~~k~v~~~~ 516 (516)
T 1uzb_A 508 EMKAVAERF 516 (516)
T ss_dssp EEEEEEEEC
T ss_pred CeeEEEecC
Confidence 999998753
No 34
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus}
Probab=100.00 E-value=1.1e-99 Score=790.41 Aligned_cols=448 Identities=26% Similarity=0.394 Sum_probs=425.4
Q ss_pred eEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHhCCChHHHH
Q 011080 30 SVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKAPIAECLVKEIAKPAKDAV 109 (494)
Q Consensus 30 ~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a~ 109 (494)
+++++||+||+++++++.++.+++++++++|++||+.|+.++..+|.++|+++++.|++++++|++++++|+|||+.+++
T Consensus 5 ~~~~~nP~tg~~i~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~ 84 (484)
T 3ros_A 5 KYQSVNPYTNEAFASYDNPTSKQIDEAINLAHALYKKWRHEEPASRAEILHDIANALKEHEDELAKMMTLEMGKLLSESK 84 (484)
T ss_dssp CCEEEETTTTEEEEECCCCCHHHHHHHHHHHHHHHHHHTTSCTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHH
T ss_pred ccceeCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchHHHHHhhHHHHhhcCCEEEE
Q 011080 110 TEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSIVL 189 (494)
Q Consensus 110 ~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~~~~~~~~~~aL~aGN~vvl 189 (494)
.|+..+++.+++++..++++.+...+. ..+...++.++|+|||++|+|||||+.+.++++++||++||+||+
T Consensus 85 ~ev~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~ALaaGN~VVl 156 (484)
T 3ros_A 85 EEVELCVSICNYYADHGPEMLKPTKLN--------SDLGNAYYLKQSTGVIMACEPWNFPLYQVIRVFAPNFIVGNPILL 156 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCEEEC--------CTTSEEEEEEECCCEEEEECCSSSTTHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeecc--------CCCceeEEEecCCceEEEECCCchHHHHHHHHHHHHHHcCCEEEE
Confidence 999999999999999998887764321 124578899999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHHHHHHc--CCCceEEecCCc
Q 011080 190 KPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGISISKKA--GMIPLQMELGGK 266 (494)
Q Consensus 190 kps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~v~~~a--~~~~~~le~gG~ 266 (494)
|||+.+|+++.+|++++.++|+|+|++|+|+|++.++++ |+.||+||.|+|||| .+|+.|.+.+ .++|+++|+|||
T Consensus 157 Kps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~~~~~-L~~~p~vd~I~fTGS~~~G~~i~~~aa~~lk~v~lELGGk 235 (484)
T 3ros_A 157 KHAHNVPGSAALTAKIIKRAGAPEGSLINLYPSYDQLAD-IIADPRIQGVALTGSERGGSAVAEAAGKNLKKSTMELGGN 235 (484)
T ss_dssp ECCTTCHHHHHHHHHHHHHHTCCTTSEEEECCCHHHHHH-HHTSTTEEEEEEESCHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred ECCCCChHHHHHHHHHHHHhCcCcCeEEEEeCChHHHHH-HHhCCCcCEEEEECCHHHHHHHHHHHhccCCceEeecCCC
Confidence 999999999999999999999999999999998778888 999999999999999 9999999877 489999999999
Q ss_pred ceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccccCCC-CCCCCCCccCCHHHHHH
Q 011080 267 DACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTVGAP-EDDCDITPVVTESSANF 345 (494)
Q Consensus 267 ~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~g~p-~~~~~~gpl~~~~~~~~ 345 (494)
||+||++|||++.|++.+++++|.|+||.|++++|||||++++|+|+++|+++++++++||| ++++++||++++.++++
T Consensus 236 ~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~~~~~~~gpli~~~~~~r 315 (484)
T 3ros_A 236 DAFIVLDDADPQVLRNVLNDARTYNDGQVCTSSKRIIVEKSRYDEVLHELKNVFSNLKAGDPLEADTTLPPMNSEKAKEK 315 (484)
T ss_dssp CEEEECTTCCHHHHHHHHTTTTTGGGGCCTTSCCEEEEEGGGHHHHHHHHHHHHHTCCBSCTTSTTCCBCCCSCHHHHHH
T ss_pred CcceeCCCCCHHHHHHHHHHHHhcCCCCCccCCceEEEcHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 88999999999999999
Q ss_pred HHHHHHHHHHcCCEEe-ecc--cCCCceeecEEEeeCCCCCCCcccccccceeeeEecCCHHHHHHHHhcCCCCceEEEe
Q 011080 346 IEGLVMDAKQKAATFC-QEY--KREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVF 422 (494)
Q Consensus 346 ~~~~i~~a~~~Ga~v~-~~~--~~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~ 422 (494)
+.++|++++++|+++. +|. +.+|+|++|||+.+++++|++++||+||||++|++|+|+||||+++|+++|||+++||
T Consensus 316 v~~~i~~a~~~Ga~v~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~aN~~~~GL~a~v~ 395 (484)
T 3ros_A 316 LEAQVKEAIDAGAKVFYQYPEIDSKGAFFRPTILTDIAKDNPVFDKEVFGPIAEVFVVEDDNAAIQLANDSSYGLGSSVI 395 (484)
T ss_dssp HHHHHHHHHHTTCEEEEECCCCCCSSCCCCCEEEECCCTTSTTTTSCCCSSEEEEEEESSHHHHHHHHHSSSCCSCEEEE
T ss_pred HHHHHHHHHHcCCeEEecCCcCCCCCceeCCeEeecCCCCCcccccccccceEEEEEcCCHHHHHHHHhCCCCCcEEEEE
Confidence 9999999999999995 443 2579999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCCCcchHHHHHHhhceeEEEEecC
Q 011080 423 TRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVINLP 487 (494)
Q Consensus 423 s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~k~i~~~~~ 487 (494)
|+|.++++++++++++|+|+||+..... +.+||||+|+||+|+++|++|+++|++.|+|+++..
T Consensus 396 t~d~~~a~~~~~~l~aG~V~vN~~~~~~-~~~PfGG~k~SG~Gr~~G~~gl~~ft~~K~v~~~~~ 459 (484)
T 3ros_A 396 GSDIDRAKKVSAQIETGMTVINGRWITS-GELPFGGIKKSGYGRELSGLGLMAFVNEHLVIDVTK 459 (484)
T ss_dssp CSCHHHHHHHHHHSCSSCCEETSCCCCC-TTSCBCCSGGGEESCBSHHHHHTTTCEEEEEEECGG
T ss_pred CCCHHHHHHHHHhCccceEEECCCCCCC-CCCCcCCcCcccCCcCchHHHHHHhheeEEEEECCC
Confidence 9999999999999999999999976544 559999999999999999999999999999998754
No 35
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.40A {Staphylococcus aureus}
Probab=100.00 E-value=5.9e-100 Score=794.68 Aligned_cols=457 Identities=30% Similarity=0.469 Sum_probs=411.6
Q ss_pred cccceeCCeeeeCCCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHHH
Q 011080 13 VYKFFYDGVWRKSSSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKAP 92 (494)
Q Consensus 13 ~~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~ 92 (494)
.+++||||+|+.+.++..++++||+||+++++++.++.+|+++++++|++||+.|+.++..+|.++|+++++.|++++++
T Consensus 7 ~~~~~i~G~~~~~~~~~~~~~~~P~tg~~i~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~ 86 (478)
T 3ty7_A 7 YTKQYINGEWVESNSNETIEVINPATEEVIGKVAKGNKADVDKAVEAADDVYLEFRHTSVKERQALLDKIVKEYENRKDD 86 (478)
T ss_dssp CCEEEETTEEEECSSSCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHH
T ss_pred hhhheECCEEecCCCCCeEEeECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHH
Confidence 56899999999987788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCChHHH-HHHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchHH
Q 011080 93 IAECLVKEIAKPAKDA-VTEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVN 171 (494)
Q Consensus 93 l~~~~~~e~Gk~~~~a-~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~~ 171 (494)
|++++++|+|||+.++ +.|+..+++.++++++.+.++.+.. .....++.++|+|||++|+|||||+.
T Consensus 87 la~~~~~e~Gk~~~ea~~~ev~~~~~~~~~~a~~~~~~~~~~------------~~~~~~~~~~P~GVv~~I~PwN~P~~ 154 (478)
T 3ty7_A 87 IVQAITDELGAPLSLSERVHYQMGLNHFVAARDALDNYEFEE------------RRGDDLVVKEAIGVSGLITPWNFPTN 154 (478)
T ss_dssp HHHHHHHHHCCCHHHHHHTHHHHHHHHHHHHHHHHHHCCSEE------------EETTEEEEEEECCCEEEECCSSSTTH
T ss_pred HHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHhhccc------------CCccceEEecCceEEEEECCCcchHH
Confidence 9999999999999999 7899999999999998887765432 12346789999999999999999999
Q ss_pred HHHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHHH
Q 011080 172 LAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGISI 250 (494)
Q Consensus 172 ~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~v 250 (494)
+.++++++||++||+||+|||+.+|+++.+|+++|.++|+|+|++|+++|++.++++.|+.||+++.|+|||| .+|+.+
T Consensus 155 ~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~~~~~aGlP~gvv~vv~g~~~~~~~~L~~~~~v~~v~fTGS~~~G~~i 234 (478)
T 3ty7_A 155 QTSLKLAAAFAAGSPVVLKPSEETPFAAVILAEIFDKVGVPKGVFNLVNGDGAGVGNPLSEHPKVRMMSFTGSGPTGSKI 234 (478)
T ss_dssp HHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHHTCCTTTEEECCCCTTTTHHHHHHCTTCCEEEECSCHHHHCC-
T ss_pred HHHHHHHHHHHcCCeEEEECCCcchHHHHHHHHHHHHhCcCcCeEEEEECCChHHHHHHHhCCCcCEEEEECcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988889999999999999999999 999999
Q ss_pred HHHc--CCCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccccCCC
Q 011080 251 SKKA--GMIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTVGAP 328 (494)
Q Consensus 251 ~~~a--~~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~g~p 328 (494)
.+.+ .++|+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||++++|+|+++|+++++++++|||
T Consensus 235 ~~~aa~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~~~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~g~p 314 (478)
T 3ty7_A 235 MEKAAKDFKKVSLELGGKSPYIVLDDVDIKEAAKATTGKVVNNTGQVCTAGTRVLVPNKIKDAFLAELKEQFSQVRVGNP 314 (478)
T ss_dssp -CSTTTTTCEEECCCCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCCCEEEEETTTHHHHHHHHHHHHHTCCBSCT
T ss_pred HHHHHhcCCceEEecCCCCCcccCCCCCHHHHHHHHHHHHHHhCCCCccCCCeEEEcHHHHHHHHHHHHHHHHhccCCCC
Confidence 9877 47999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCCCCCCccCCHHHHHHHHHHHHHHHHcCCEEeecc-c-----CCCceeecEEEeeCCCCCCCcccccccceeeeEecC
Q 011080 329 -EDDCDITPVVTESSANFIEGLVMDAKQKAATFCQEY-K-----REGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRIN 401 (494)
Q Consensus 329 -~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~~~~-~-----~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~ 401 (494)
++++++||++++.+++++++++++++++|+++..++ . ..|+|++|||+.+++++|++++||+||||++|++|+
T Consensus 315 ~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~~~~g~~~~Ptvl~~v~~~~~~~~eE~FGPvl~v~~~~ 394 (478)
T 3ty7_A 315 REDGTQVGPIISKKQFDQVQNYINKGIEEGAELFYGGPGKPEGLEKGYFARPTIFINVDNQMTIAQEEIFGPVMSVITYN 394 (478)
T ss_dssp TSTTCCBCCCSCHHHHHHHHHHHHHHHHHTCEEEECCSSCCTTCCSSCCCCCEEEESCCTTSHHHHSCCCSSEEEEEEES
T ss_pred CCCCCccCCCcCHHHHHHHHHHHHHHHHCCCEEEecCccCccccCCCceeCCEEEecCCCCCcccCceeECceeEEEecC
Confidence 889999999999999999999999999999995433 1 368999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCCCcchHHHHHHhhceeE
Q 011080 402 SVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKS 481 (494)
Q Consensus 402 ~~~eai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~k~ 481 (494)
|+||||+++|+++|||+++|||+|.++++++++++++|+|+||+ .... ..+||||+|+||+|+++|.+|+++||+.|+
T Consensus 395 ~~~eAi~~an~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~vN~-~~~~-~~~PfGG~k~SG~G~~~G~~~l~~~t~~k~ 472 (478)
T 3ty7_A 395 DLDEAIQIANDTKYGLAGYVIGKDKETLHKVARSIEAGTVEINE-AGRK-PDLPFGGYKQSGLGREWGDYGIEEFLEVKS 472 (478)
T ss_dssp SHHHHHHHHTCSSCCSEEEEECSCHHHHHHHHHHSCSSEEEETT-CC-----------------------CCGGGEEEEE
T ss_pred CHHHHHHHHhCCCCCceEEEECCCHHHHHHHHHhCCcCeEEECC-CCCC-CCCCcCCcCcCcCCccchHHHHHHhcCeEE
Confidence 99999999999999999999999999999999999999999999 4433 448999999999999999999999999999
Q ss_pred EE
Q 011080 482 TV 483 (494)
Q Consensus 482 i~ 483 (494)
|+
T Consensus 473 v~ 474 (478)
T 3ty7_A 473 IA 474 (478)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 36
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A
Probab=100.00 E-value=8.2e-97 Score=768.41 Aligned_cols=448 Identities=28% Similarity=0.434 Sum_probs=423.5
Q ss_pred CCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHhCCChHH
Q 011080 28 GKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKAPIAECLVKEIAKPAKD 107 (494)
Q Consensus 28 ~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~ 107 (494)
...++++||+||+++++++.++.+++++++++|++|++.|+.++..+|.++|+++++.|++++++|++++++|+|||..+
T Consensus 6 ~~~~~~~~P~t~~~i~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~ 85 (462)
T 3etf_A 6 ATQALSVNPATGQTLAAMPWANAQEIEHALSLAASGFKKWKMTSVAQRAQTLRDIGQALRAHAEEMAQCITREMGKPIKQ 85 (462)
T ss_dssp CCCSEEECTTTCCEEEECCCCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHH
T ss_pred cCccceECCCCCCEEEEecCCCHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchHHHHHhhHHHHhhcCCEE
Q 011080 108 AVTEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSI 187 (494)
Q Consensus 108 a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~~~~~~~~~~aL~aGN~v 187 (494)
++.|+..+++.++++++...++.+... . ...+...++.++|+|||++|+|||||+.+.++++++||++||+|
T Consensus 86 a~~ev~~~~~~~~~~a~~~~~~~~~~~-~-------~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~V 157 (462)
T 3etf_A 86 ARAEVTKSAALCDWYAEHGPAMLNPEP-T-------LVENQQAVIEYRPLGVILAIMPWNFPLWQVLRGAVPILLAGNSY 157 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCEE-C-------SSGGGCEEEEEEECSEEEEECCSSSTTHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHhHHHhcCCcc-c-------CCCCceeEEEeecCcEEEEECCCchHHHHHHHHHHHHHhcCCEE
Confidence 999999999999999998887766531 1 11245678999999999999999999999999999999999999
Q ss_pred EEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHHHHHHc--CCCceEEecC
Q 011080 188 VLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGISISKKA--GMIPLQMELG 264 (494)
Q Consensus 188 vlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~v~~~a--~~~~~~le~g 264 (494)
|+|||+.+|+++.+|+++|.++|+|+|++|+++| +.+.+..|+.||+++.|+|||| .+|+.|.+.+ ..+|+++|+|
T Consensus 158 vlKps~~tp~~~~~l~~~l~~aglP~gv~~vv~g-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~aa~~~~~v~lElG 236 (462)
T 3etf_A 158 LLKHAPNVTGCAQMIARILAEAGTPAGVYGWVNA-NNEGVSQMINDPRIAAVTVTGSVRAGAAIGAQAGAALKKCVLELG 236 (462)
T ss_dssp EEECCTTCHHHHHHHHHHHHHTTCCBTTEEECCC-CHHHHHHHHTSTTEEEEEEESCHHHHHHHHHHHHHTTCCEEEECC
T ss_pred EEECCCCCcHHHHHHHHHHHHhCCCcCeEEEEEC-CHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHhccCCceEEEcC
Confidence 9999999999999999999999999999999999 4678889999999999999999 9999999876 5899999999
Q ss_pred CcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccccCCC-CCCCCCCccCCHHHH
Q 011080 265 GKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTVGAP-EDDCDITPVVTESSA 343 (494)
Q Consensus 265 G~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~g~p-~~~~~~gpl~~~~~~ 343 (494)
||||+||++|||++.|++.+++++|.|+||.|++++|||||++++|+|+++|+++++++++||| ++++++||++++.++
T Consensus 237 Gk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~~~~~~~gpli~~~~~ 316 (462)
T 3etf_A 237 GSDPFIVLNDADLELAVKAAVAGRYQNTGQVCAAAKRFIVEEGIAQAFTDRFVAAAAALKMGDPLVEENDLGPMARFDLR 316 (462)
T ss_dssp CCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHHHHHHHHHHHHHHHHCCBSCTTSTTCSBCCCSCHHHH
T ss_pred CCCccEECCCCCHHHHHHHHHHHHHhcCCCcccCCcEEEEehhHHHHHHHHHHHHHHhhcCCCCccccCcccCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 889999999999999
Q ss_pred HHHHHHHHHHHHcCCEEeeccc---CCCceeecEEEeeCCCCCCCcccccccceeeeEecCCHHHHHHHHhcCCCCceEE
Q 011080 344 NFIEGLVMDAKQKAATFCQEYK---REGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGC 420 (494)
Q Consensus 344 ~~~~~~i~~a~~~Ga~v~~~~~---~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~ 420 (494)
+++.+++++++++|+++..++. .+|+|++|||+.+++++|++++||+||||++|++|+|+||||+++|+++|||+++
T Consensus 317 ~~v~~~i~~a~~~ga~~~~gg~~~~~~g~~~~Ptvl~~v~~~~~~~~eE~FGPVl~v~~~~~~deAi~~an~~~~gL~a~ 396 (462)
T 3etf_A 317 DELHQQVQASVAEGARLLLGGEKIAGEGNYYAATVLADVTPDMTAFRQELFGPVAAITVAKDAAHALALANDSEFGLSAT 396 (462)
T ss_dssp HHHHHHHHHHHHTTCEEEECCSBCSSSSCCBCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHHHHHHHHHCSSCCSCEE
T ss_pred HHHHHHHHHHHHCCCEEEeCCcccCCCCcEEeeEEEECCCCCChhhcCceeCcEEEEEEcCCHHHHHHHHhCCCCCceEE
Confidence 9999999999999999954432 4799999999999999999999999999999999999999999999999999999
Q ss_pred EeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCCCcchHHHHHHhhceeEEEEe
Q 011080 421 VFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVIN 485 (494)
Q Consensus 421 v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~k~i~~~ 485 (494)
|||+|.++++++++++++|+|+||++.... ..+||||+|+||+|+++|.+|+++|++.|+|+++
T Consensus 397 v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~-~~~PfGG~k~SG~G~~~g~~g~~~~~~~k~v~~~ 460 (462)
T 3etf_A 397 IFTADDTLAAEMAARLECGGVFINGYSASD-ARVAFGGVKKSGFGRELSHFGLHEFCNVQTVWKN 460 (462)
T ss_dssp EECSCHHHHHHHHHHCCSSEEEESSCCCCC-TTSCBCCSGGGEECCBSHHHHHHTTEEEEEEEEC
T ss_pred EECCCHHHHHHHHHhCCcceEEECCCCCCC-CCCCcCCcCCCCCCccchHHHHHHHhceeEEEEe
Confidence 999999999999999999999999987544 4599999999999999999999999999999875
No 37
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino acid metabolism, proline inhibition, oxidoreductase; HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A* 3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Probab=100.00 E-value=2e-96 Score=775.76 Aligned_cols=465 Identities=22% Similarity=0.307 Sum_probs=427.9
Q ss_pred CcccceeCCeeeeCCCCCeEEeeCCCC-CCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHc-
Q 011080 12 GVYKFFYDGVWRKSSSGKSVTIINPTT-RKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQ- 89 (494)
Q Consensus 12 ~~~~~~i~g~~~~~~~~~~~~v~~P~t-g~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~- 89 (494)
..+++||||+|+.+. ..+.++||+| ++++++++.++.+|+++|+++|++||+.|+.++..+|.++|++++++|+++
T Consensus 62 ~~~~~~I~G~~~~~~--~~~~~~~P~~~~~~i~~~~~a~~~dv~~Av~aA~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~ 139 (563)
T 4e3x_A 62 EAIPCVVGDEEVWTS--DIQYQLSPFNHAHKVAKFCYADKALLNRAIDAALAARKEWDLKPMADRAQVFLKAADMLSGPR 139 (563)
T ss_dssp EECCEEETTEEECCS--CEEEEEETTEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTT
T ss_pred ccCCeEECCEEeecC--CceeeeCCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcc
Confidence 468899999999753 4678899998 799999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhCCChHHHHHH-HHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCc
Q 011080 90 KAPIAECLVKEIAKPAKDAVTE-VVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNY 168 (494)
Q Consensus 90 ~~~l~~~~~~e~Gk~~~~a~~e-v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~ 168 (494)
+++|++++++|+|||+.+++.| +.++++.+++++..+.++.+.... .. ......+.++.|+|||++|+||||
T Consensus 140 ~~el~~~~~~e~Gk~~~ea~~e~v~~~~~~~~~~a~~~~~~~~~~~~------~~-~~~~~~~~~r~p~GVV~~I~PwNf 212 (563)
T 4e3x_A 140 RAEVLAKTMVGQGKTVIQAEIDAAAELIDFFRFNAKFAVELEGEQPI------SV-PPSTNHTVYRGLEGFVAAISPFNF 212 (563)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHTTHHHHHHHHHHHHHHHHHTTCCCC------CC-TTEEEEEECCBCSSEEEEECCSSC
T ss_pred HHHHHHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCcc------CC-CCCcceEEEecCceEEEEECCchH
Confidence 9999999999999999999987 999999999999998887764311 11 113445667777899999999999
Q ss_pred hHHHHHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHH
Q 011080 169 PVNLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTG 247 (494)
Q Consensus 169 P~~~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~ 247 (494)
|+....+++++|| +||+||+|||+.+|+++.+|+++|.++|+|+|+||+|+|++.++++.|+.||+|++|+|||| .+|
T Consensus 213 P~~~~~~~~apAL-aGNtVVlKPs~~tp~sa~~l~~ll~eAGlP~Gvvnvv~g~g~~~g~~L~~hp~v~~I~FTGSt~vG 291 (563)
T 4e3x_A 213 TAIGGNLAGAPAL-MGNVVLWKPSDTAMLASYAVYRILREAGLPPNIIQFVPADGPTFGDTVTSSEHLCGINFTGSVPTF 291 (563)
T ss_dssp HHHHHHHHHHHHH-TTCCEEEECCGGGHHHHHHHHHHHHHTTCCTTSEEECCCCHHHHHHHHTTCTTEEEEEEESCHHHH
T ss_pred HHHHHHHHHHHhh-cCCEEEEECCCCChHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHhCCCcCEEEEECCHHHH
Confidence 9999999999999 59999999999999999999999999999999999999988889999999999999999999 999
Q ss_pred HHHHHHc--CCC------ceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHH
Q 011080 248 ISISKKA--GMI------PLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAK 319 (494)
Q Consensus 248 ~~v~~~a--~~~------~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~ 319 (494)
+.|.+.+ .++ |+++|+|||||+||++|||++.|++.+++++|.|+||.|++++|||||+++||+|+++|+++
T Consensus 292 ~~i~~~aa~~lk~~~~~prv~lElGGk~p~IV~~dADld~Aa~~iv~~~f~~~GQ~C~A~~rv~V~~si~d~f~~~l~~~ 371 (563)
T 4e3x_A 292 KHLWRQVAQNLDRFRTFPRLAGECGGKNFHFVHSSADVDSVVSGTLRSAFEYGGQKCSACSRLYVPKSLWPQIKGRLLEE 371 (563)
T ss_dssp HHHHHHHHHTTTTCSSCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCccccCCceeccCCCCCceeeCCCCCHHHHHHHHHHHHHhcCCCCCcCCcEEEEecchHHHHHHHHHHH
Confidence 9998876 355 59999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccCCC--CCCCCCCccCCHHHHHHHHHHHHHHHH-cCCEEeeccc---CCCceeecEEEeeCCCCCCCcccccccc
Q 011080 320 VAKLTVGAP--EDDCDITPVVTESSANFIEGLVMDAKQ-KAATFCQEYK---REGNLIWPLLLDNVRPDMRIAWEEPFGP 393 (494)
Q Consensus 320 ~~~~~~g~p--~~~~~~gpl~~~~~~~~~~~~i~~a~~-~Ga~v~~~~~---~~g~~~~Ptvl~~~~~~~~~~~~E~fgP 393 (494)
++++++||| ++++++||++++.+++++.++|+++++ +|++++.|+. .+|+|++|||+.+++++|++++||+|||
T Consensus 372 ~~~l~vGdp~~d~~~~~Gpli~~~~~~rv~~~i~~a~~~~ga~v~~GG~~~~~~G~fv~PTvl~~v~~~~~i~~eEiFGP 451 (563)
T 4e3x_A 372 HSRIKVGDPAEDFGTFFSAVIDAKAFARIKKWLEHARSSPSLSILAGGQCNESVGYYVEPCIIESKDPQEPIMKEEIFGP 451 (563)
T ss_dssp HHTCCBSCTTTCTTCSBCCCSCHHHHHHHHHHHHHHHHCTTEEEEECCCEECSSSCEECCEEEEESCTTCGGGTSCCCSS
T ss_pred HHhccCCCcccCcCCccCCCcCHHHHHHHHHHHHHHhhcCCCEEEeCCccCCCCCcEecCEEEecCCCCChhhcCCCcCe
Confidence 999999999 468999999999999999999999996 7999954432 4699999999999999999999999999
Q ss_pred eeeeEecCC--HHHHHHHH-hcCCCCceEEEeccCHHHHHHHHhhcc--cceEEECCCCCC-CCCCCCccCccCCCCC-C
Q 011080 394 VLPVIRINS--VEEGIHHC-NASNFGLQGCVFTRDINKAILISDAME--TGTVQINSAPSR-GPDHFPFQGLKDSGIG-S 466 (494)
Q Consensus 394 vl~v~~~~~--~~eai~~~-n~~~~gl~a~v~s~d~~~~~~~~~~~~--~g~v~iN~~~~~-~~~~~pfgG~~~SG~g-~ 466 (494)
|++|++|+| +||||+++ |+++|||+++|||+|.+++++++++++ +|+|+||+.++. ....+||||+|.||+| +
T Consensus 452 Vl~V~~~~d~~~deAi~~ann~s~yGLta~V~t~d~~~~~~~~~~l~~~aG~v~IN~~~~~~~~~~~PFGG~k~SG~g~~ 531 (563)
T 4e3x_A 452 VLTVYVYPDDKYRETLKLVDSTTSYGLTGAVFAQDKAIVQEATRMLRNAAGNFYINDKSTGSVVGQQPFGGARASGTNDK 531 (563)
T ss_dssp EEEEEEECGGGHHHHHHHHHHSSSEESEEEEECSCHHHHHHHHHHTTTTCSEEEESSCSCCCCTTTSCCCCEETTBCCCC
T ss_pred EEEEEEECCCCHHHHHHHHHcCCCCCCEEEEEeCCHHHHHHHHHhhhcCeeEEEEcCCCCCCCcCCCCCCCccccCCCCc
Confidence 999999997 79999999 789999999999999999999999975 999999998763 2345899999999998 8
Q ss_pred cchHHHHHHhhceeEEEEec
Q 011080 467 QGITNSINMMTKIKSTVINL 486 (494)
Q Consensus 467 ~~g~~~l~~~~~~k~i~~~~ 486 (494)
++|+++|++|++.|+|..+.
T Consensus 532 ~~G~~~l~~~~~~k~v~~~~ 551 (563)
T 4e3x_A 532 PGGPHYILRWTSPQVIKETH 551 (563)
T ss_dssp TTSTTGGGGGBCCEEEEEEC
T ss_pred cCCHHHHHHhCceEEEEEeC
Confidence 99999999999999998885
No 38
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.1e-95 Score=763.43 Aligned_cols=457 Identities=27% Similarity=0.383 Sum_probs=424.7
Q ss_pred cccceeCCeeeeCCCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHHH
Q 011080 13 VYKFFYDGVWRKSSSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKAP 92 (494)
Q Consensus 13 ~~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~ 92 (494)
..++||||+|+.+. +..++++||+||+++++++.++.+++++++++|++||+.|+.++..+|.++|+++++.|++++++
T Consensus 5 ~~~~~I~G~~~~~~-~~~~~~~~P~tg~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~e 83 (490)
T 3ju8_A 5 MSTHYIAGQWLAGQ-GETLESLDPVGQGVVWSGRGADATQVDAAVCAAREAFPAWARRPLEQRIELLERFAATLKSRADE 83 (490)
T ss_dssp CCCEEETTEEECCC-SCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHH
T ss_pred ccCceECCEEecCC-CCeEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999998763 56799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchHHH
Q 011080 93 IAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNL 172 (494)
Q Consensus 93 l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~~~ 172 (494)
|++++++|+|||+.+++.|+..+++.+++++....++.+..... ......++.++|+|||++|+|||||+.+
T Consensus 84 la~~~~~e~Gk~~~ea~~ev~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~P~GVv~~I~PwN~P~~~ 155 (490)
T 3ju8_A 84 LARVIGEETGKPLWESATEVTSMVNKVAISVQAFRERTGEKSGP--------LADATAVLRHKPHGVVAVFGPYNFPGHL 155 (490)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEE--------ETTEEEEEEEEECSEEEEECCSSSTTHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc--------CCCCeeeEEECCCCEEEEECCCcchHHH
Confidence 99999999999999999999999999999988877766543211 1124456779999999999999999999
Q ss_pred HHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHHHH
Q 011080 173 AVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGISIS 251 (494)
Q Consensus 173 ~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~v~ 251 (494)
.++++++||++||+||+|||+.+|+++.+|+++|.++|+|+|++|+++| +.+.++.|+.||++|.|+|||| .+|+.+.
T Consensus 156 ~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g-~~~~~~~L~~~~~v~~V~fTGS~~~g~~i~ 234 (490)
T 3ju8_A 156 PNGHIVPALLAGNCVVFKPSELTPKVAELTLKAWIQAGLPAGVLNLVQG-GRETGVALAAHRGLDGLFFTGSSRTGNLLH 234 (490)
T ss_dssp HHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHTTCCTTTEEECCC-SHHHHHHHHTCTTCSEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHHhCcCcCeEEEEeC-CHHHHHHHHhCCCcCEEEEECcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 6789999999999999999999 9999999
Q ss_pred HHc--CCCce-EEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccch-HHHHHHHHHHHHhccccCC
Q 011080 252 KKA--GMIPL-QMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESV-ADTLVEKVKAKVAKLTVGA 327 (494)
Q Consensus 252 ~~a--~~~~~-~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~-~~~f~~~l~~~~~~~~~g~ 327 (494)
+.+ +++|+ ++|+|||||+||++|||++.|++.+++++|.|+||.|++++|+|||+++ +|+|+++|+++++++++|+
T Consensus 235 ~~aa~~~~~v~~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~~i~d~f~~~l~~~~~~~~~G~ 314 (490)
T 3ju8_A 235 SQFGGQPQKILALEMGGNNPLVVEEVADLDAAVYTIIQSAFISAGQRCTCARRLLVPQGAWGDALLARLVAVSATLRVGR 314 (490)
T ss_dssp HHTTTCTTSEEEEECCCCEEEEECCCSCHHHHHHHHHHHHHGGGGCSTTSEEEEEEESSHHHHHHHHHHHHHHHHCCBCC
T ss_pred HHhhccCCCcEEeecCCCCeEEECCCCCHHHHHHHHHHHHHhcCCCCCcCCCEEEEECCccHHHHHHHHHHHHHhccCCC
Confidence 987 36887 7999999999999999999999999999999999999999999999996 9999999999999999999
Q ss_pred -C-CCCCCCCccCCHHHHHHHHHHHHHHHHcCCEEe-eccc--CCCceeecEEEeeCCCCCCCcccccccceeeeEecCC
Q 011080 328 -P-EDDCDITPVVTESSANFIEGLVMDAKQKAATFC-QEYK--REGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINS 402 (494)
Q Consensus 328 -p-~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~-~~~~--~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~ 402 (494)
| ++.+++||++++.+.+++.+++++++++|++++ +|.. .+|+|++|||+. +++++++++||+||||++|++|+|
T Consensus 315 ~~~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~g~~~~PTvl~-v~~~~~i~~eEiFGPVl~v~~~~~ 393 (490)
T 3ju8_A 315 FDEQPAPFMGAVISLSAAEHLLKAQEHLIGKGAQPLLAMTQPIDGAALLTPGILD-VSAVAERPDEEFFGPLLQVIRYSD 393 (490)
T ss_dssp TTCSSCCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCCCSTTSCCCCCEEEE-CTTCSSCCCCCCCSSEEEEEEESS
T ss_pred CCCCCcCccccccCHHHHHHHHHHHHHHHHCCCEEEECCCccCCCCCEEccEEEE-eCCCCccccccccccEEEEEEeCC
Confidence 8 889999999999999999999999999999985 4422 478999999999 999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCCCcchHHHHHHhhceeEE
Q 011080 403 VEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKIKST 482 (494)
Q Consensus 403 ~~eai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~k~i 482 (494)
+||||+++|+++|||+++|||+|.++++++++++++|+|+||++.......+||||+|.||++ ++++|++.|+|
T Consensus 394 ~~eAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~~PfGG~~~SG~~------~~~~~~~~k~v 467 (490)
T 3ju8_A 394 FAAAIREANATQYGLAAGLLSDSRERFEQFLVESRAGIVNWNKQLTGAASSAPFGGIGASGNH------RPSAYYAADYC 467 (490)
T ss_dssp HHHHHHHHHCSSCCSEEEEECSCHHHHHHHHHHCCSSEEEESSCSSCCCTTSEECCCGGGBSS------CCEETTHHHHH
T ss_pred HHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHhcCcceEEECCCcCCCCCCCCcCCccccchh------HHHhhheeEEE
Confidence 999999999999999999999999999999999999999999987654456999999999974 58899999999
Q ss_pred EEec
Q 011080 483 VINL 486 (494)
Q Consensus 483 ~~~~ 486 (494)
++..
T Consensus 468 ~~~~ 471 (490)
T 3ju8_A 468 AYPV 471 (490)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8775
No 39
>4h7n_A Aldehyde dehydrogenase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ALDH_ddaldh, COG1012, glyco_hydro_97; 2.00A {Anabaena variabilis}
Probab=100.00 E-value=9.9e-96 Score=761.44 Aligned_cols=457 Identities=25% Similarity=0.383 Sum_probs=421.1
Q ss_pred CCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHhCCCh
Q 011080 26 SSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKAPIAECLVKEIAKPA 105 (494)
Q Consensus 26 ~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~ 105 (494)
.++++++++||+||+++++++.++.+++++|+++|++||+.|+.+|.++|.++|+++++.|++++++|++++++|+||+.
T Consensus 3 a~~~t~~v~nP~tg~~~~~~~~~~~~~v~~av~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 82 (474)
T 4h7n_A 3 AMTKTIEVRNPRTGKFDYVIIPPPPRLLAQQCNRARRAQSRWQELGVEGRITTLQQWKQAILSRREQLTEALVNDTGRLS 82 (474)
T ss_dssp CCCCCEEEECTTTCSEEEEECCCCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHSCSH
T ss_pred CCCCEEeeECCCCCCEEEEEcCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchHHHHHhhHHHHhhcCC
Q 011080 106 KDAVTEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGN 185 (494)
Q Consensus 106 ~~a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~~~~~~~~~~aL~aGN 185 (494)
++..|+...++.+++++..+.+++...... ........+..++|+|||++|+|||||+.+.++++++||++||
T Consensus 83 -~~~~ev~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~P~GVv~~I~PwNfP~~~~~~~~~~ALaaGN 155 (474)
T 4h7n_A 83 -ITVLEIDSFLASIDRWCGLAPELLQTSAKN------TSIPFIALQQSLVPYPLVGVISPWNFPLTLSMIDTIPALLAGC 155 (474)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHCCEEEE------CSSTTEEEEEEEEECSEEEEEECSSSHHHHHHTTHHHHHHHTC
T ss_pred -HHHHHHHHHHHHHHHHHhhhhhcccccccC------CCCCCccceEEEEeccEEEEECCCCcHHHHHhcccCcchhcCC
Confidence 556799999999999888877776543221 1112345667889999999999999999999999999999999
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHHHHHHc--CCCceEEe
Q 011080 186 SIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGISISKKA--GMIPLQME 262 (494)
Q Consensus 186 ~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~v~~~a--~~~~~~le 262 (494)
+||+|||+.+|.++..+++++.++|+|+|++++++| +.+.+..|..| ++.|+|||| .+|+.+++.+ +++|+++|
T Consensus 156 ~VVlKps~~tp~~~~~l~~~~~~ag~p~gv~~~v~g-~~~~~~~l~~~--v~~v~FTGS~~~G~~i~~~aa~~~~~v~lE 232 (474)
T 4h7n_A 156 AVVVKPSEIAPRFVAPLLMALNTVPELRDVLIFVEG-GGETGANLINY--VDFVCFTGSVATGREVAETAARRFIPAYLE 232 (474)
T ss_dssp EEEEEECTTSCTTHHHHHHHHTTCTTTTTTEEECCC-CHHHHHHHHTT--CSEEEEESCHHHHHHHHHHHHHHTCCEEEE
T ss_pred ceeecccccCchHHHHHHhhhhhhcccccceeeccc-cchhhhhhhhc--cceEEeccccchhhhhhhhhhccccccccc
Confidence 999999999999999999999999999999999999 56788888876 899999999 9999998876 48999999
Q ss_pred cCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccccCCC-CCCCCCCccCCHH
Q 011080 263 LGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTVGAP-EDDCDITPVVTES 341 (494)
Q Consensus 263 ~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~g~p-~~~~~~gpl~~~~ 341 (494)
+|||||+||++|||++.|++.+++++|.|+||.|++++|||||++++|+|+++|+++++++++|+| ++++++||++++.
T Consensus 233 lGGk~p~iV~~dAdl~~aa~~i~~~~~~n~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~ 312 (474)
T 4h7n_A 233 LGGKDPAIVLESANLELATSAILWGAVVNTGQSCLSIERIYVAESKFEEFYHQLIAKAHRLQLAYPLVEDGAIGPIIAEK 312 (474)
T ss_dssp CCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEGGGHHHHHHHHHHHHHHCCBCCSSGGGCSBCCCSSHH
T ss_pred CCCcCccccCchhhHHHHHHHHHhhhccCCCCceeecccccchHHHHHHHHHHHHHHhhccccCCCcccccccCccccHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 7899999999999
Q ss_pred HHHHHHHHHHHHHHcCCEEeeccc----CCCceeecEEEeeCCCCCCCcccccccceeeeEecCCHHHHHHHHhcCCCCc
Q 011080 342 SANFIEGLVMDAKQKAATFCQEYK----REGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGL 417 (494)
Q Consensus 342 ~~~~~~~~i~~a~~~Ga~v~~~~~----~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl 417 (494)
+.+++.+++++++++|+++..|+. ..|+|++|||+.+++++|++++||+||||++|++|+|+||||+++|+++|||
T Consensus 313 ~~~~v~~~i~~a~~~ga~v~~Gg~~~~~~~g~~~~Ptv~~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~aN~~~~GL 392 (474)
T 4h7n_A 313 QAGIINDHILDAVEKGAVIHCGGKVEELGGGWWCRPTVMTNVNHSMKVMTEETFGPIMPVMPFPDVEEAVYLANDTIYGL 392 (474)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCCCEEETTEEECCCEEEESCCTTSGGGTSCCCSSEEEEEEESSHHHHHHHHHCSSCCS
T ss_pred HHHHHHHHHHHHHhhCceeccCCcccccCCCcccCceeEEeeccccccccccccCcEEEEEEECCHHHHHHHHHcCCCCC
Confidence 999999999999999999964432 3689999999999999999999999999999999999999999999999999
Q ss_pred eEEEeccCHHHHHHHHhhcccceEEECCCCCC-CCCCCCccCccCCCCC-CcchHHHHHHhhceeEEEEecCCCCCC
Q 011080 418 QGCVFTRDINKAILISDAMETGTVQINSAPSR-GPDHFPFQGLKDSGIG-SQGITNSINMMTKIKSTVINLPTPSYT 492 (494)
Q Consensus 418 ~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~-~~~~~pfgG~~~SG~g-~~~g~~~l~~~~~~k~i~~~~~~~~~~ 492 (494)
+++|||+|.++++++++++++|+|+||+.+.. .....||||+|.||+| +++|.+|+++|++.|+|+++......|
T Consensus 393 ~a~v~t~d~~~a~~~a~~l~aG~v~iN~~~~~~~~~~~pfgG~~~SG~G~~~~G~~g~~~f~~~k~v~~~~~~~~~p 469 (474)
T 4h7n_A 393 SAAVFAGSEDEALKVARQLNAGAISINDAALTAMMHEGEKNAFNFSGLGGSRVGAAGLKRFLRKQAFLIKTNSTSDP 469 (474)
T ss_dssp EEEEECSSHHHHHHHHTTSCCSEEEESSSCGGGTCCCSCCCCCGGGEESCCSSTTHHHHTTEEEEEEEEECSSSCCT
T ss_pred eEEEEeCCHHHHHHHHHhCCeeEEEECCCCccCCcCCCCCCCcCCCCCCCCcchHHHHHHhCeEEEEEECCCCCCCC
Confidence 99999999999999999999999999998763 3345899999999998 789999999999999999997554333
No 40
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase; proline utilization A, PUTA, flavoenzyme, structural genomic biology; HET: FAD MES; 2.20A {Geobacter sulfurreducens}
Probab=100.00 E-value=4.9e-94 Score=796.45 Aligned_cols=466 Identities=27% Similarity=0.466 Sum_probs=435.9
Q ss_pred CcccceeCCeeeeCCCCCeEEeeCCCC-CCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcH
Q 011080 12 GVYKFFYDGVWRKSSSGKSVTIINPTT-RKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQK 90 (494)
Q Consensus 12 ~~~~~~i~g~~~~~~~~~~~~v~~P~t-g~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~ 90 (494)
..+++||||+|+. ++..++++||+| ++++++++.++.+++++|+++|++|++.|+.+|..+|.++|+++++.|++++
T Consensus 530 ~~~~~~I~G~~~~--~~~~~~v~nPa~~~~~i~~v~~a~~~dv~~Av~aA~~A~~~W~~~~~~eRa~iL~~~Adll~~~~ 607 (1026)
T 4f9i_A 530 KTYPLFINGKEVR--TNDLIPTVNPNKPSEVLGQICQAGTTEVGDAIAAAKAAFPAWRDTDPRTRAEYLLKAAQAARKRL 607 (1026)
T ss_dssp EEECEEETTEEEC--CSCEEEEEETTEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTH
T ss_pred cccCceECCEEec--CCCcEEEeCCCCCCceEEEEeCCCHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 3678999999986 357899999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchH
Q 011080 91 APIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPV 170 (494)
Q Consensus 91 ~~l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~ 170 (494)
++|++++++|+|||..+++.|+..+++.++|++..+.++.+..... . ..+...++.++|+|||++|+|||||+
T Consensus 608 ~eLa~~~~~E~GK~~~ea~~Ev~~aid~lr~~a~~~~~~~~~~~~~---~----~~g~~~~~~~~PlGVV~~I~PwNfPl 680 (1026)
T 4f9i_A 608 FELSAWQVLEIGKQWDQAYADVTEAIDFLEYYAREMIRLGQPQRVG---H----APGELNHYFYEPKGVAAVIAPWNFPL 680 (1026)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTSCEEEC---C----CTTEEEEEEEEECSEEEEECCSSSTT
T ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHhcCCcccc---C----CCCccceeEeecCceEEEeCCCccHH
Confidence 9999999999999999999999999999999999988876543211 0 12456788999999999999999999
Q ss_pred HHHHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHH
Q 011080 171 NLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGIS 249 (494)
Q Consensus 171 ~~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~ 249 (494)
.+.++++++||++||+||+|||+.+|+++..++++|.++|+|+|++|+|+|++.++++.|++||+|+.|+|||| .+|+.
T Consensus 681 ~i~~~~~a~ALaaGNtVVlKPse~tplsa~~l~ell~eAGlP~gvvnvV~G~g~~vg~~L~~hp~v~~V~FTGSt~vg~~ 760 (1026)
T 4f9i_A 681 AISMGMASAAIVTGNCVVFKPSGITSIIGWHLVELFREAGLPEGVFNFTPGRGSVMGDYLVDHPDISLIAFTGSMETGLR 760 (1026)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCTTSEEECCCCHHHHHHHHHHCTTEEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEEcCccchHHHHHHHHHHHHhCcCCCeEEEEecCcHHHHHHHHhCCCCCEEEeCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999 99999
Q ss_pred HHHHcC--------CCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHh
Q 011080 250 ISKKAG--------MIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVA 321 (494)
Q Consensus 250 v~~~a~--------~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~ 321 (494)
|.+.++ .+|+++|+|||||+||++|||++.|++.+++|+|.|+||.|++++|+|||++++|+|+++|+++++
T Consensus 761 I~~~aa~~~~~~~~lkpv~lElGGknp~IV~~dADld~Aa~~iv~saf~~aGQ~C~A~~rl~V~~~i~d~f~~~L~~~~~ 840 (1026)
T 4f9i_A 761 IIERAAKVHPGQANVKKIISEMGGKNAIIIDDDADLDEAVPHVLYSAFGFQGQKCSACSRVIVLDAVYDKFIERLVSMAK 840 (1026)
T ss_dssp HHHHHTSCCTTCCSCCEEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEGGGHHHHHHHHHHHHH
T ss_pred HHHHhhcccccccCccceEEecCCCCeEEECCCCCHHHHHHHHHHHHHhCCCCCCCCCceEEecHHHHHHHHHHHHHHHH
Confidence 998764 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCC-CCCCCCCccCCHHHHHHHHHHHHHHHHcCCEE-eeccc-C-CCceeecEEEeeCCCCCCCcccccccceeee
Q 011080 322 KLTVGAP-EDDCDITPVVTESSANFIEGLVMDAKQKAATF-CQEYK-R-EGNLIWPLLLDNVRPDMRIAWEEPFGPVLPV 397 (494)
Q Consensus 322 ~~~~g~p-~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v-~~~~~-~-~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v 397 (494)
++++|+| ++++++||++++.+.+++.++|++++++| ++ ++|.. . .|+|+.|||+.++++++++++||+||||++|
T Consensus 841 ~l~vG~p~d~~t~~Gpvi~~~~~~~v~~~i~~a~~~G-~~v~gG~~~~~~G~fv~PTvl~~v~~~~~i~~eEiFGPVl~V 919 (1026)
T 4f9i_A 841 ATKVGPSEDPANYMGAVADDKAMKSIKEYAEIGKREG-HVLYESPVPAGEGYFVPMTIIGGIKPEHRIAQEEIFGPVLAV 919 (1026)
T ss_dssp HCCBCCTTSTTCSBCCCSSHHHHHHHHHHHHHHHHHS-EEEEECCCCSSSSCCCCCEEEESCCTTSGGGTSCCCSSEEEE
T ss_pred hcccCCcccccCccccccCHHHHHHHHHHHHHHHhCC-eEEecCCcCCCCCceecceeeecCCCCccccCceecCcEEEE
Confidence 9999999 88999999999999999999999999999 66 45432 2 3999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHhcCCCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCC-CCCCCccCccCCCCCC-cchHHHHHH
Q 011080 398 IRINSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRG-PDHFPFQGLKDSGIGS-QGITNSINM 475 (494)
Q Consensus 398 ~~~~~~~eai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~-~~~~pfgG~~~SG~g~-~~g~~~l~~ 475 (494)
++|+|+||||+++|+++|||+++|||+|.+.+.++++++++|+|+||+.++.. ...+||||+|.||+|+ .+|++++++
T Consensus 920 ~~~~d~deAI~~aN~t~yGLt~~V~t~d~~~a~~~~~~l~aG~v~IN~~~~~~~~~~~PFGG~k~SG~G~~~gG~~~l~~ 999 (1026)
T 4f9i_A 920 MRAKDFDQAIEWANSTQFALTGGIFSRSPEHLAKARREFRVGNLYINRNNTGALVERQPFGGARMSGVGTKAGGPDYLLH 999 (1026)
T ss_dssp EEESSHHHHHHHHTCSSCCSEEEEECCCHHHHHHHHHHSCCSEEEESSCSCCCCTTTSCBCCCGGGBSSCCBTSTTTGGG
T ss_pred EEeCCHHHHHHHHHcCCCCCeEEEECCCHHHHHHHHHhCCEeeEEEcCCCCCCCCCCCCCCCcCcCCCCCCcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999987643 3458999999999995 689999999
Q ss_pred hhceeEEEEecC
Q 011080 476 MTKIKSTVINLP 487 (494)
Q Consensus 476 ~~~~k~i~~~~~ 487 (494)
|++.|+|+++..
T Consensus 1000 f~~~k~v~~~~~ 1011 (1026)
T 4f9i_A 1000 FMDPRVVTENTM 1011 (1026)
T ss_dssp GEEEEEEEEECC
T ss_pred hceEEEEEEecc
Confidence 999999999864
No 41
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP, nucleotide-binding; HET: NAP; 1.40A {Burkholderia xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Probab=100.00 E-value=1.4e-94 Score=762.84 Aligned_cols=466 Identities=22% Similarity=0.280 Sum_probs=415.5
Q ss_pred ccceeCCeeeeCCCCCeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHH-hHHhcCCCHHHHHHHHHHHHHHHHHcHHH
Q 011080 14 YKFFYDGVWRKSSSGKSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLA-QKSWAKTPLWKRAELLHKAAAILKEQKAP 92 (494)
Q Consensus 14 ~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a-~~~w~~~~~~~R~~~L~~~a~~l~~~~~~ 92 (494)
+++||||+|+.+.+ ..++++||+||+++++++.++ +|+++|+++|++| |+.|+.++..+|.++|+++++.|++++++
T Consensus 8 ~~~~i~G~~~~~~~-~~~~v~nP~tg~~i~~~~~~~-~dv~~Av~aA~~A~~~~w~~~~~~~R~~~L~~~a~~l~~~~~e 85 (534)
T 2y53_A 8 LKNHVAGQWIAGTG-AGITLTDPVTGVALVRVSSEG-LDLARAFSFAREDGGAALRALTYAQRAARLADIVKLLQAKRGD 85 (534)
T ss_dssp CCEEETTEEECCSS-SCEEEECTTTCCEEEEECCTT-CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHH
T ss_pred hhhEECCEEecCCC-CeEEEECCCCCCEEEEEeCCH-HHHHHHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHhHHH
Confidence 67899999997544 479999999999999999988 9999999999999 59999999999999999999999999999
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCC-CCceEEEEeeec-eeEEeeCCCCchH
Q 011080 93 IAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNE-RTKYCLTSKIPL-GVVLAIPPFNYPV 170 (494)
Q Consensus 93 l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~P~-GVv~~i~p~n~P~ 170 (494)
|++++++|+|||+.+++.|+..+++.+++++..++++.+...++..+..+... .....+..++|+ |||++|+|||||+
T Consensus 86 la~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~P~~GVv~~I~PwN~P~ 165 (534)
T 2y53_A 86 YYAIATANSGTTRNDSAVDIDGGIFTLSYYAKLGASLGEVHALRDGSAESLSKDRSFSAQHVLSPTRGVALFINAFNFPS 165 (534)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTTCSCSEEEEEEEEECSTTSSEEEEEEEEECSSCEEEECCTTCTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCccccCCCCCcccceEEEecCCCEEEEECCCchHH
Confidence 99999999999999999999999999999988776554322111111001111 122457889997 9999999999999
Q ss_pred HHHHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcC-CCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHH
Q 011080 171 NLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAG-FPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGI 248 (494)
Q Consensus 171 ~~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aG-lP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~ 248 (494)
.+.++++++||++||+||+|||+.+|+++..|++++.++| +|+|++|+|+|++.+++..| ++++.|+|||| .+|+
T Consensus 166 ~~~~~~~a~ALaaGN~VVlKPs~~tp~~~~~l~~l~~~aG~lP~gvv~vv~g~~~~l~~~l---~~vd~V~FTGS~~~G~ 242 (534)
T 2y53_A 166 WGLWEKAAPALLSGVPVIVKPATATAWLTQRMVADVVDAGILPPGALSIICGSSAGLLDQI---RSFDVVSFTGSADTAA 242 (534)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCGGGHHHHHHHHHHHHHHTCSCTTSEEECCSCCTTSGGGC---CTTCEEEEESCHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHhCCCCCCeEEEEeCChHHHHhcc---cccCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999999999 79999999999655444333 57899999999 9999
Q ss_pred HHHHHc----CCCceEEecCCcceEEEeCCC-----CHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHH
Q 011080 249 SISKKA----GMIPLQMELGGKDACIILEDA-----DLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAK 319 (494)
Q Consensus 249 ~v~~~a----~~~~~~le~gG~~~~iV~~da-----Dl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~ 319 (494)
.|.+.+ .+||+++|+|||||+||++|| |++.|++.+++++|.|+||.|++++|||||++++|+|+++|+++
T Consensus 243 ~i~~~aa~a~~~k~v~lELGGk~p~iV~~dA~~~~~Dl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~ 322 (534)
T 2y53_A 243 TLRAHPAFVQRGARLNVQADSLNSAILCADATPDTPAFDLFIKEVVREMTVKSGQKCTAIRRAFVPEAALEPVLEALKAK 322 (534)
T ss_dssp HHHTSHHHHTTCCEEEEECCCCEEEEECTTCCTTSHHHHHHHHHHHHHHHGGGGCCTTSEEEEEEEGGGHHHHHHHHHHH
T ss_pred HHHHhhhhhcCCCcEEEEcCCCCeEEECCCccccccCHHHHHHHHHHHHHhCCCCcccCCCEEEEeccHHHHHHHHHHHH
Confidence 998753 489999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HhccccCCC-CCCCCCCccCCHHHHHHHHHHHHHHHHcCCEEe-eccc--------CCCceeecEEEeeCCCC--CCCcc
Q 011080 320 VAKLTVGAP-EDDCDITPVVTESSANFIEGLVMDAKQKAATFC-QEYK--------REGNLIWPLLLDNVRPD--MRIAW 387 (494)
Q Consensus 320 ~~~~~~g~p-~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~-~~~~--------~~g~~~~Ptvl~~~~~~--~~~~~ 387 (494)
++++++||| ++++++||++++.+++++.++|+++ .+|++++ +|.. ..|+|++|||+.+++++ +++++
T Consensus 323 ~~~~~vG~p~~~~~~~Gpli~~~~~~rv~~~i~~a-~~ga~~~~GG~~~~~~~~~~~~g~~~~PTvl~~v~~~~~~~i~~ 401 (534)
T 2y53_A 323 LAKITVGNPRNDAVRMGSLVSREQYENVLAGIAAL-REEAVLAYDSSAVPLIDADANIAACVAPHLFVVNDPDNATLLHD 401 (534)
T ss_dssp HTTCCBBCTTSTTCSBCCCSCHHHHHHHHHHHHHH-HTSSEEEEECTTSCCBSCCTTTSCCCCCEEEECSCGGGCSSTTT
T ss_pred HHhccCCCCCcCCCCccCCCCHHHHHHHHHHHHHH-HcCCEEEECCcccccccccCCCCceecCEEEEecCccccCHHHh
Confidence 999999999 8899999999999999999999999 6899984 4431 25899999999999887 68999
Q ss_pred cccccceeeeEecC---CH-----HHHHHHHhcCCCCceEEEeccCHHHHHHHHhhc--ccceEEECCCCC--------C
Q 011080 388 EEPFGPVLPVIRIN---SV-----EEGIHHCNASNFGLQGCVFTRDINKAILISDAM--ETGTVQINSAPS--------R 449 (494)
Q Consensus 388 ~E~fgPvl~v~~~~---~~-----~eai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~--~~g~v~iN~~~~--------~ 449 (494)
||+||||++|++|+ |+ ||||+++|+++|||+++|||+|.++++++++++ ++|+|+||++.. .
T Consensus 402 eEiFGPVl~v~~~~~~~~~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~~~aG~V~vN~~~~~~~~~~~~~ 481 (534)
T 2y53_A 402 VEVFGPVASVAPYRVTTDTNALPEAHAVALARRGQGSLVASIYSNDDAHLGRLALELADSHGRVHAISPSVQHSQTGHGN 481 (534)
T ss_dssp CCCSSSEEEEEEECCCCC---CTTHHHHHHHHTTSSEEEEEEECSCHHHHHHHHHHHTTTEEEEEEECGGGTTTCCCSSC
T ss_pred CCCcCCEEEEEEECCCCCcccCCHHHHHHHHhCCCCCceEEEECCCHHHHHHHHHHHHhhCCEEEEcCCcccccccccCC
Confidence 99999999999999 99 999999999999999999999999999999999 899999998632 1
Q ss_pred CCCCCCccCccCCCCCCc-chHHHHHHhhceeEEEEe
Q 011080 450 GPDHFPFQGLKDSGIGSQ-GITNSINMMTKIKSTVIN 485 (494)
Q Consensus 450 ~~~~~pfgG~~~SG~g~~-~g~~~l~~~~~~k~i~~~ 485 (494)
....+||||+|.||+|++ +|.+++++|++.|+|...
T Consensus 482 ~~~~~pfGG~k~SG~Gr~~~g~~~l~~~~~~k~v~~~ 518 (534)
T 2y53_A 482 VMPMSLHGGPGRAGGGEELGGLRALAFYHRRSAIQAA 518 (534)
T ss_dssp CCTTSEECCSGGGCSCCEESGGGGGGGGEEEEEEEEE
T ss_pred CCCCCCCCCcccCCCCCCcchHHHHHHHhhhheeecC
Confidence 234589999999999999 799999999999998763
No 42
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A*
Probab=100.00 E-value=3e-92 Score=732.00 Aligned_cols=442 Identities=24% Similarity=0.330 Sum_probs=391.9
Q ss_pred CeEEeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHhCCChHHH
Q 011080 29 KSVTIINPTTRKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKAPIAECLVKEIAKPAKDA 108 (494)
Q Consensus 29 ~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a 108 (494)
..++++||+||+++++++.++.+++++++++|++||+.|+.+|..+|.++|+++++.|++++++|++++++|+|||+.++
T Consensus 6 ~~~~~~~~~~~~~i~~v~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea 85 (457)
T 3lns_A 6 HHHHHSSGHIDDDDKHMNYLSPAKIDSLFSAQKAYFATRATADVGFRKQSLERLKEAVINNKEALYSALAEDLGKPKDVV 85 (457)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCHHHH
T ss_pred ccccccCCCCCCeeeecCCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchHHHHHhhHHHHhhcCCEE
Q 011080 109 V-TEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSI 187 (494)
Q Consensus 109 ~-~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~~~~~~~~~~aL~aGN~v 187 (494)
+ .|+..+++.++++++.++++........ +....+...++.++|+|||++|+|||||+.+.++++++||++||+|
T Consensus 86 ~~~ev~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~V 161 (457)
T 3lns_A 86 DLAEIGAVLHEIDFALAHLDEWVAPVSVPS----PDIIAPSECYVVQEPYGVTYIIGPFNYPVNLTLTPLIGAIIGGNTC 161 (457)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHTSCEEECC----CGGGCSCEEEEEEEECCEEEEECCSSSTTHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccc----cccCCCcceEEEeecceEEEEECCCcchHHHHHHHHHHHHHcCCEE
Confidence 8 5999999999999998888775421110 1001245678999999999999999999999999999999999999
Q ss_pred EEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHHHHHHc--CCCceEEecC
Q 011080 188 VLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGISISKKA--GMIPLQMELG 264 (494)
Q Consensus 188 vlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~v~~~a--~~~~~~le~g 264 (494)
|+|||+.+|+++.+|++++.++ +|+|++|+++| +.+.+..|++ +++|.|+|||| .+|+.|.+.+ .++|+++|+|
T Consensus 162 VlKps~~tp~t~~~l~~l~~~a-lP~gvv~vv~g-~~~~~~~L~~-~~vd~V~fTGS~~~G~~i~~~aa~~l~pv~lElG 238 (457)
T 3lns_A 162 IIKPSETTPETSAVIEKIIAEA-FAPEYVAVIQG-GRDENSHLLS-LPFDFIFFTGSPNVGKVVMQAAAKHLTPVVLELG 238 (457)
T ss_dssp EEECCTTCHHHHHHHHHHHHHH-CCTTTEEECCC-CHHHHHHHTT-SCCSEEEEESCHHHHHHHHHHHHTTTCCEEEECC
T ss_pred EEECCCCChHHHHHHHHHHHHh-CCHhhEEEecC-CHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHhhccCceEEECC
Confidence 9999999999999999999998 99999999999 6788999998 78999999999 9999999876 4799999999
Q ss_pred CcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccccCCCCCCCCCCccCCHHHHH
Q 011080 265 GKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTVGAPEDDCDITPVVTESSAN 344 (494)
Q Consensus 265 G~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~g~p~~~~~~gpl~~~~~~~ 344 (494)
||||+||++|||++.|++.+++++|.|+||.|++++|||||++++|+|+++|++++++++ |.+. ++||++++.+++
T Consensus 239 Gk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~---p~~~-~~gpli~~~~~~ 314 (457)
T 3lns_A 239 GKCPLIVLPDADLDQTVNQLMFGKFINSGQTXIAPDYLYVHYSVKDALLERLVERVKTEL---PEIN-STGKLVTERQVQ 314 (457)
T ss_dssp CCEEEEECTTCCHHHHHHHHHHHHHGGGGCCTTSEEEEEEEGGGHHHHHHHHHHHHHHHC---CSTT-TTCCCSSHHHHH
T ss_pred CCCCCeECCCCCHHHHHHHHHHHHHHhCCCCccCCceEEEcHHHHHHHHHHHHHHHHhcC---CCcc-cccCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987 6334 999999999999
Q ss_pred HHHHHHHHHHHcCCEEe-ecc-cCCCceeecEEEeeCCCCCCCcccccccceeeeEecCCHHHHHHHHhc-CCCCceEEE
Q 011080 345 FIEGLVMDAKQKAATFC-QEY-KREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNA-SNFGLQGCV 421 (494)
Q Consensus 345 ~~~~~i~~a~~~Ga~v~-~~~-~~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~~~eai~~~n~-~~~gl~a~v 421 (494)
++.++++++. +++. +|. ..+|+|+.|||+.+++++|++++||+||||++|++|+|+||||+++|+ ++|||+++|
T Consensus 315 rv~~~i~~a~---~~~~~gg~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~aN~~~~~gL~a~v 391 (457)
T 3lns_A 315 RLVSLLEATQ---GQVLVGSQADVSKRALSATVVDGVEWNDPLMSEELFGPILPVLEFDSVRTAIDQVNKHHPKPLAVYV 391 (457)
T ss_dssp HHHHHHHHCC---SEEEECCCEEGGGTEECCEEEESCCTTSGGGSSCCCSSEEEEEEESCHHHHHHHHHHHSCSCSEEEE
T ss_pred HHHHHHHhcC---CeEEeCCccCCCCceeCCEEEecCCCCChhhcCcccCcEEEEEEeCCHHHHHHHHHcCCCCCeEEEE
Confidence 9999999853 4664 443 247899999999999999999999999999999999999999999999 999999999
Q ss_pred eccCHHHHHHHHhhcccceEEECCCCC-CCCCCCCccCccCCCCCCcchHHHHHHhhceeEEEE
Q 011080 422 FTRDINKAILISDAMETGTVQINSAPS-RGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVI 484 (494)
Q Consensus 422 ~s~d~~~~~~~~~~~~~g~v~iN~~~~-~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~k~i~~ 484 (494)
||+|.++++++++++++|+|+||++.. .....+||||+|+||+|+++|.+|+++|++.|+|++
T Consensus 392 ~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~~~PfGG~k~SG~G~~~g~~~~~~f~~~k~v~~ 455 (457)
T 3lns_A 392 FGKDMDVAKGIINQIQSGDAQVNGVMLHAFSPYLPFGGIGASGMGEYHGHFSYLTFTHKKSVRI 455 (457)
T ss_dssp ECSCHHHHHHHHHTSCCSEEEESCCSGGGGCTTSCBCCCGGGEECCBSHHHHHHHTEEEEEEEE
T ss_pred ECCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCCCcCCcCcCCCCCCchHHHHHHhhCeeEEEe
Confidence 999999999999999999999999764 234569999999999999999999999999999976
No 43
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology, nysgrc, NEW YORK structura genomics research consortium; HET: PE4; 1.91A {Sinorhizobium meliloti}
Probab=100.00 E-value=2.1e-91 Score=737.58 Aligned_cols=470 Identities=21% Similarity=0.230 Sum_probs=415.6
Q ss_pred cccccccCCcccceeCCeeeeCCCCCeEEeeCCCCCCceE-EEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHH
Q 011080 4 FEEIVDENGVYKFFYDGVWRKSSSGKSVTIINPTTRKPHF-RVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKA 82 (494)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~-~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~ 82 (494)
|..|......+++||||+|+.+.+ ++||+||++++ +++.++.+++++++++|++||+.|+.++..+|.++|+++
T Consensus 20 ~~~~~~~~~~~~~~I~G~~~~~~~-----v~nP~tg~~i~~~~~~~~~~dv~~av~~A~~A~~~w~~~~~~~R~~~L~~~ 94 (528)
T 3v4c_A 20 FQSMMIFTPKGKHLVAGEWLDGAG-----TFASAPAHGPAHDFAVGTVELVNRACEAAEEAFWTYGYSSRKERAAFLRAI 94 (528)
T ss_dssp ---CCSCCCCCCEEETTEEECCSS-----EEECCCSSSCCCEEECCCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHhhhcccccCceECCEEecCCC-----ccCCCCCCEeeeEeCCCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 344555566788999999987532 89999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHcHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhHH--HhcCccccc-cCCCCCCCCCceEEEEeeecee
Q 011080 83 AAILKEQKAPIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVR--ILGEGKLLV-SDSFPGNERTKYCLTSKIPLGV 159 (494)
Q Consensus 83 a~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~P~GV 159 (494)
++.|++++++|++++++|+|||+.+++.|+..+++.++++++.+++ +.+...... +...+ ..+...++.++|+||
T Consensus 95 a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~P~GV 172 (528)
T 3v4c_A 95 ADEIEARAEAITEIGSQETGLPEARLNGERGRTTGQLRLFADHIEKGDYLDRRVDAAMPERQP--APRQEIRLVQRPVGP 172 (528)
T ss_dssp HHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCEEECCBTTCSS--SCBCCEEEEEEECSC
T ss_pred HHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccC--CCCCcceeEeeCCcE
Confidence 9999999999999999999999999999999999999999988877 333221100 00001 113446789999999
Q ss_pred EEeeCCCCchHHHHH--hhHHHHhhcCCEEEEcCCCCChHHHHHHHHHH----HHcCCCCCcEEEecCCchhhHhhhhhC
Q 011080 160 VLAIPPFNYPVNLAV--SKIAPALIAGNSIVLKPPTQGAVAALHMVHCF----HLAGFPKGLISCVTGKGSEIGDFLTMH 233 (494)
Q Consensus 160 v~~i~p~n~P~~~~~--~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l----~~aGlP~g~i~~v~g~~~~~~~~L~~~ 233 (494)
|++|+|||||+.+.+ +++++||++||+||+|||+.+|+++..+++++ .++|+|+|++|+|+|++.+++..|++|
T Consensus 173 v~~I~PwN~P~~~~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~~l~~aGlP~gvv~vv~g~~~~~g~~L~~~ 252 (528)
T 3v4c_A 173 VAVFGASNFPLAFSTAGGDTAAALAAGCPVVVKGHSAHPGTGEIVAEAVDAAIRKTGVHPGVFSLIQGGSRDVGHALVQH 252 (528)
T ss_dssp EEEECCSSSTTTTSTTSHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEECCCCHHHHHHHHHC
T ss_pred EEEECCCcchHHHhhhhhhhHHHHhcCCEEEEECCCCCcHHHHHHHHHHHHHHHhcCCCcCeEEEEeCCCHHHHHHHHhC
Confidence 999999999999865 89999999999999999999999999999865 578999999999999888899999999
Q ss_pred CCccEEEEecc-HHHHHHHHHc--CC--CceEEecCCcceEEEeCCC---CHHHHHHHHHHHHhhccCCCccCccEEEEc
Q 011080 234 PSINCISFTGG-DTGISISKKA--GM--IPLQMELGGKDACIILEDA---DLDLAAANIVKGGFSYSGQRCTAVKVALVM 305 (494)
Q Consensus 234 ~~v~~v~ftGs-~~~~~v~~~a--~~--~~~~le~gG~~~~iV~~da---Dl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~ 305 (494)
|+|++|+|||| .+|+.|.+.+ .+ +|+++|+|||||+||++|| |++.|++.+++++|.|+||.|++++|||||
T Consensus 253 p~v~~V~fTGS~~~G~~i~~~aa~~~~~~pv~lElGGk~p~iV~~dAd~~dl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~ 332 (528)
T 3v4c_A 253 PHIKAVGFTGSLAGGRALFDLCAARPEPIPFFGELGSVNPMFLLPEALKARAETLGQGWAGSLTMGAGQFCTNPGIAVVI 332 (528)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHSSSCCCEEEECCCCCCEEECHHHHHHHHHHHHHHHHHHHHGGGGCCTTCCCEEEEE
T ss_pred CCCCEEEEECChHHHHHHHHHHhhccCCCceEEecCCCCeEEECCCCChhhHHHHHHHHHHHHHhcCCCccccCcEEEEe
Confidence 99999999999 9999999876 45 8999999999999999999 889999999999999999999999999999
Q ss_pred cc-hHHHHHHHHHHHHhccccCCCCCCCCCCccCCHHHHHHHHHHHHHHHHcCCEEeecccCCCceeecEEEeeCCCC--
Q 011080 306 ES-VADTLVEKVKAKVAKLTVGAPEDDCDITPVVTESSANFIEGLVMDAKQKAATFCQEYKREGNLIWPLLLDNVRPD-- 382 (494)
Q Consensus 306 ~~-~~~~f~~~l~~~~~~~~~g~p~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~~~~~~~g~~~~Ptvl~~~~~~-- 382 (494)
++ ++|+|+++|++++++++.| +.+||++++.+.+++.++++ ++|+++..|+...|+|++|||+.+++++
T Consensus 333 ~~~i~d~f~~~l~~~~~~~~~~-----~~~gp~~~~~~~~~v~~~~~---~~Ga~v~~gG~~~g~~~~PTvl~~~~~~~~ 404 (528)
T 3v4c_A 333 EGADADRFTTAAVEALAKVAPQ-----TMLTDGIAKAYRDGQARFAT---RNAVKPLLATESSGRDASPNLFETTGAQFL 404 (528)
T ss_dssp SSHHHHHHHHHHHHHHHTCCCE-----ECSCHHHHHHHHHHHHHHHT---CTTCEEEECCCCCTTEECCEEEEEEHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcccC-----CCCCHHHHHHHHHHHHHHHH---hCCCEEEeCCCcCCceeccEEEEecCcccc
Confidence 97 9999999999999988643 67899998888777777653 4799996555558999999999988887
Q ss_pred -CCCcccccccceeeeEecCCHHHHHHHHhcCCCCceEEEecc--CHHHHHHHHhhcc--cceEEECCCCCC--CCCCCC
Q 011080 383 -MRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTR--DINKAILISDAME--TGTVQINSAPSR--GPDHFP 455 (494)
Q Consensus 383 -~~~~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~s~--d~~~~~~~~~~~~--~g~v~iN~~~~~--~~~~~p 455 (494)
|++++||+||||++|++|+|+||||+++|+++|||+++|||+ |.+++++++++++ +|+|+||++++. ....+|
T Consensus 405 ~~~i~~eEiFGPVl~V~~~~~~deAi~~aN~~~~GL~a~v~t~d~d~~~a~~~a~~l~~~aG~V~vN~~~~~~~~~~~~p 484 (528)
T 3v4c_A 405 ADHALGEEVFGPLGLVVRVGSPAEMEELARGFQGQLTATIHMDAGDLETARRLRPVLERKAGRVLVNGFPTGVEVVDSMV 484 (528)
T ss_dssp HCGGGGCCCSSSEEEEEEESSHHHHHHHHHHCCCEEEEEEECCGGGHHHHHHHHHHHHHHEEEEEESSCTTCCCCSTTCC
T ss_pred cChhhcccccCCeEEEEecCCHHHHHHHHhcCCCCceEEEEcCCCCHHHHHHHHHHHhhcCcEEEEcCCCCCCccCCCCC
Confidence 899999999999999999999999999999999999999999 8999999999998 999999997763 235599
Q ss_pred ccC-ccCCCCCCcc--hHHHHHHhhceeEEEEecCCC
Q 011080 456 FQG-LKDSGIGSQG--ITNSINMMTKIKSTVINLPTP 489 (494)
Q Consensus 456 fgG-~~~SG~g~~~--g~~~l~~~~~~k~i~~~~~~~ 489 (494)
||| +|.||+|+++ |++|+++|++.|++ .++|..
T Consensus 485 fGG~~~~Sg~gr~~~~G~~gl~~~~~~k~~-q~~p~~ 520 (528)
T 3v4c_A 485 HGGPYPASTNFGATSVGTMSIRRFLRPVAY-QNMPED 520 (528)
T ss_dssp CCCTTTTBSCTTCCSSSGGGGGGGEEEEEE-ESCCGG
T ss_pred CCCCCCCCCCCCCCCCcHHHHHHhchhHHh-hcCCcc
Confidence 999 9999999985 99999999999974 666653
No 44
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann fold, oxidoreductase; 1.48A {Homo sapiens} SCOP: c.82.1.1 PDB: 3szb_A* 1ad3_A*
Probab=100.00 E-value=3.4e-90 Score=716.95 Aligned_cols=427 Identities=26% Similarity=0.378 Sum_probs=387.6
Q ss_pred CCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHhCCChHHHH-HHHHHHHHHHHHHHHH
Q 011080 47 ACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKAPIAECLVKEIAKPAKDAV-TEVVRSGDLVSYCAEE 125 (494)
Q Consensus 47 ~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a~-~ev~~~~~~l~~~~~~ 125 (494)
..+.+|+++++++|++||+.|+.++..+|.++|+++++.|++++++|++++++|+|||..+++ .|+..+...++++++.
T Consensus 14 ~~s~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~~ev~~~~~~~~~~~~~ 93 (469)
T 3sza_A 14 GSHMSKISEAVKRARAAFSSGRTRPLQFRIQQLEALQRLIQEQEQELVGALAADLHKNEWNAYYEEVVYVLEEIEYMIQK 93 (469)
T ss_dssp ----CHHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456779999999999999999999999999999999999999999999999999999999997 5999999999998888
Q ss_pred hHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchHHHHHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHH
Q 011080 126 GVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHC 205 (494)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~~~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~ 205 (494)
...+....... ... .......++.++|+|||++|+|||||+.+.++++++||++||+||+|||+.+|+++.+|+++
T Consensus 94 ~~~~~~~~~~~--~~~--~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~vVlKps~~tp~t~~~l~~l 169 (469)
T 3sza_A 94 LPEWAADEPVE--KTP--QTQQDELYIHSEPLGVVLVIGTWNYPFNLTIQPMVGAIAAGNAVVLKPSELSENMASLLATI 169 (469)
T ss_dssp HHHHHSCEECC--CCG--GGTTSEEEEEEEECSEEEEECCSSSTTHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHH
T ss_pred HHhhhcccccC--ccc--cCCCccceeeccCCCEEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHH
Confidence 77776542211 000 01234678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHHHHHHc--CCCceEEecCCcceEEEeCCCCHHHHHH
Q 011080 206 FHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGISISKKA--GMIPLQMELGGKDACIILEDADLDLAAA 282 (494)
Q Consensus 206 l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~v~~~a--~~~~~~le~gG~~~~iV~~daDl~~aa~ 282 (494)
+.++ +|+|++|+++|+ .+.+..|+.| ++|.|+|||| .+|+.|.+.+ .++|+++|+|||||+||++|||++.|++
T Consensus 170 ~~~a-lP~gvv~vv~g~-~~~~~~ll~~-~vd~I~FTGS~~vG~~i~~~aa~~lkpv~lELGGk~p~iV~~dADl~~Aa~ 246 (469)
T 3sza_A 170 IPQY-LDKDLYPVINGG-VPETTELLKE-RFDHILYTGSTGVGKIIMTAAAKHLTPVTLELGGKSPCYVDKNCDLDVACR 246 (469)
T ss_dssp HHHH-SCTTTSCBCCCS-HHHHHHHTTS-CCSEEEEESCHHHHHHHHHHHHTTTCCEEEECCCCCEEEECTTSCHHHHHH
T ss_pred HHHh-CCcceEEEEECC-HHHHHHHHhc-CCCEEEEECCHHHHHHHHHHHhhccCceEEecCCCCceEECCCCCHHHHHH
Confidence 9998 999999999994 4455667777 8999999999 9999999876 4899999999999999999999999999
Q ss_pred HHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccccCCC-CCCCCCCccCCHHHHHHHHHHHHHHHHcCCEEe
Q 011080 283 NIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTVGAP-EDDCDITPVVTESSANFIEGLVMDAKQKAATFC 361 (494)
Q Consensus 283 ~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~g~p-~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~ 361 (494)
.+++++|.|+||.|++++|||||++++|+|+++|+++++++ .|+| ++++++||++++.+++++.+++ +|+++.
T Consensus 247 ~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~-~g~~~~~~~~~gpli~~~~~~rv~~~i-----~ga~v~ 320 (469)
T 3sza_A 247 RIAWGKFMNSGQTCVAPDYILCDPSIQNQIVEKLKKSLKEF-YGEDAKKSRDYGRIISARHFQRVMGLI-----EGQKVA 320 (469)
T ss_dssp HHHHHHHGGGGCCTTSCCEEEECGGGHHHHHHHHHHHHHHH-HCSCGGGCTTCCCCSCHHHHHHHHHHH-----TTSEEE
T ss_pred HHHHHHHhcCCCCCCCCcEEEEehhHHHHHHHHHHHHHHHh-cCCCCcccCcccccCCHHHHHHHHHHH-----cCCEEE
Confidence 99999999999999999999999999999999999999988 5988 7899999999999999999998 688985
Q ss_pred -ecc-cCCCceeecEEEeeCCCCCCCcccccccceeeeEecCCHHHHHHHHhcCCCCceEEEeccCHHHHHHHHhhcccc
Q 011080 362 -QEY-KREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAMETG 439 (494)
Q Consensus 362 -~~~-~~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~~g 439 (494)
+|. ...|+|++|||+.+++++|++++||+||||++|++|+|+||||+++|+++|||+++|||+|.++++++++++++|
T Consensus 321 ~GG~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~~G 400 (469)
T 3sza_A 321 YGGTGDAATRYIAPTILTDVDPQSPVMQEEIFGPVLPIVCVRSLEEAIQFINQREKPLALYMFSSNDKVIKKMIAETSSG 400 (469)
T ss_dssp ECCCEETTTTEECCEEEESCCTTSGGGTSCCCSSEEEEEECSSHHHHHHHHHHSCCCSEEEEECSCHHHHHHHHHHCCCS
T ss_pred eCCccCCCCceeCCeeecCCCCcchhhhccccCCeEEEEecCCHHHHHHHHHcCCCCceEEEECCCHHHHHHHHHhCCcc
Confidence 443 246899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEECCCCC-CCCCCCCccCccCCCCCCcchHHHHHHhhceeEEEEec
Q 011080 440 TVQINSAPS-RGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVINL 486 (494)
Q Consensus 440 ~v~iN~~~~-~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~k~i~~~~ 486 (494)
+|+||++.. .....+||||+|+||+|+++|.+|+++||+.|+|+++.
T Consensus 401 ~V~vN~~~~~~~~~~~PfGG~k~SG~Gr~~G~~g~~~ft~~K~v~~~~ 448 (469)
T 3sza_A 401 GVAANDVIVHITLHSLPFGGVGNSGMGSYHGKKSFETFSHRRSCLVRP 448 (469)
T ss_dssp EEEESCSSGGGSCTTSCBCCCGGGEECCBSTHHHHHHTEEEEEEEECC
T ss_pred eEEEeCCCCCCCCCCCCcCCccccccCccchHHHHHHhhCeeEEEECC
Confidence 999999864 23455999999999999999999999999999998874
No 45
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+, oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP: c.82.1.1 PDB: 1eyy_A*
Probab=100.00 E-value=4.1e-88 Score=709.62 Aligned_cols=447 Identities=18% Similarity=0.194 Sum_probs=399.6
Q ss_pred CCCCCeEEeeCCCCCCce-EEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHhCC
Q 011080 25 SSSGKSVTIINPTTRKPH-FRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKAPIAECLVKEIAK 103 (494)
Q Consensus 25 ~~~~~~~~v~~P~tg~~i-~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk 103 (494)
+.++..++++||+||+++ ++++.++.+|+++++++|++||+.|+.++..+|.++|+++++.|++++++|++++++|+||
T Consensus 3 ~~~~~~~~~~nP~tg~~i~~~~~~~~~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk 82 (510)
T 1ez0_A 3 PQTDNVFYATNAFTGEALPLAFPVHTEVEVNQAATAAAKVARDFRRLNNSKRASLLRTIASELEARSDDIIARAHLETAL 82 (510)
T ss_dssp --CCCEEEEECTTTSSEEEEEEECCCHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCC
T ss_pred CCCCCeEEeECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC
Confidence 345678999999999999 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhHH--HhcCccccc-cCCCCCCCCCceEEEEeeeceeEEeeCCCCchHHHH--HhhHH
Q 011080 104 PAKDAVTEVVRSGDLVSYCAEEGVR--ILGEGKLLV-SDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLA--VSKIA 178 (494)
Q Consensus 104 ~~~~a~~ev~~~~~~l~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~~~~--~~~~~ 178 (494)
|+.+++.|+..+++.++++++.+++ +++...... +...+. .....++.++|+|||++|+|||||+.+. .++++
T Consensus 83 ~~~~a~~Ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~~ 160 (510)
T 1ez0_A 83 PEVRLTGEIARTANQLRLFADVVNSGSYHQAILDTPNPTRAPL--PKPDIRRQQIALGPVAVFGASNFPLAFSAAGGDTA 160 (510)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEEEECCBTTCSSS--CBCCEEEEEEECSCEEEECCSSCTTTTSTTSHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCccccccccccccccCCC--CCCCceEEEecCcEEEEECCccchhhhhhhHHHHH
Confidence 9999999999999999999988876 443321000 000011 1123578999999999999999999985 49999
Q ss_pred HHhhcCCEEEEcCCCCChHHHHHHHHHH----HHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHHHHHH
Q 011080 179 PALIAGNSIVLKPPTQGAVAALHMVHCF----HLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGISISKK 253 (494)
Q Consensus 179 ~aL~aGN~vvlkps~~~~~t~~~l~~~l----~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~v~~~ 253 (494)
+||++||+||+|||+.+|+++.++++++ .++|+|+|++|+++|++.+++..|++||+||.|+|||| .+|+.|.+.
T Consensus 161 ~ALaaGN~VVlKps~~tp~t~~~l~~l~~~al~~aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~I~FTGS~~~G~~i~~~ 240 (510)
T 1ez0_A 161 SALAAGCPVIVKGHTAHPGTSQIVAECIEQALKQEQLPQAIFTLLQGNQRALGQALVSHPEIKAVGFTGSVGGGRALFNL 240 (510)
T ss_dssp HHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEECCSCTHHHHHHHHCTTCCEEEEESCHHHHHHHHHH
T ss_pred HHHHcCCEEEEECCCCchHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHcCCCCCEEEEeCcHHHHHHHHHH
Confidence 9999999999999999999999999988 56899999999999977889999999999999999999 999999987
Q ss_pred cC----CCceEEecCCcceEEEeCCCCHH--HHHHHHHHHHhhccCCCccCccEEEEccc-hHHHHHHHHHHHHhccccC
Q 011080 254 AG----MIPLQMELGGKDACIILEDADLD--LAAANIVKGGFSYSGQRCTAVKVALVMES-VADTLVEKVKAKVAKLTVG 326 (494)
Q Consensus 254 a~----~~~~~le~gG~~~~iV~~daDl~--~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~-~~~~f~~~l~~~~~~~~~g 326 (494)
++ .+|+++|+|||||+||++|||++ .|++.+++++|.|+||.|++++|||||++ ++|+|+++|++++++++
T Consensus 241 aa~~l~~~pv~lELGGk~p~iV~~dADl~~~~aa~~i~~~~~~n~GQ~C~a~~rvlV~~~~i~d~f~~~l~~~~~~~~-- 318 (510)
T 1ez0_A 241 AHERPEPIPFYGELGAINPTFIFPSAMRAKADLADQFVASMTMGCGQFCTKPGVVFALNTPETQAFIETAQSLIRQQS-- 318 (510)
T ss_dssp HHHSSSCCCEEEECCCCCEEEECHHHHHHCTTHHHHHHHHHTGGGGCCTTCCCEEEEESSHHHHHHHHHHHHHHHHCC--
T ss_pred hhccCCCccEEEECCCCCeEEEeCCCCccHHHHHHHHHHHHHcCCCCCcCCCCEEEEeCCccHHHHHHHHHHHHHhcC--
Confidence 63 39999999999999999999999 99999999999999999999999999999 99999999999999886
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHHHH-cCCEEeecccCCCceeecEEEeeCCCC---CCCcccccccceeeeEecCC
Q 011080 327 APEDDCDITPVVTESSANFIEGLVMDAKQ-KAATFCQEYKREGNLIWPLLLDNVRPD---MRIAWEEPFGPVLPVIRINS 402 (494)
Q Consensus 327 ~p~~~~~~gpl~~~~~~~~~~~~i~~a~~-~Ga~v~~~~~~~g~~~~Ptvl~~~~~~---~~~~~~E~fgPvl~v~~~~~ 402 (494)
.||++++.+.+++.++++++++ +|+++..|+. .|+|++|||+.+++++ |++++||+||||++|++|+|
T Consensus 319 -------~gp~~~~~~~~~~~~~v~~~~~~~Ga~~~~gg~-~g~~~~Ptvl~~~~~~~~~~~i~~eEiFGPVl~v~~~~~ 390 (510)
T 1ez0_A 319 -------PSTLLTPGIRDSYQSQVVSRGSDDGIDVTFSQA-ESPCVASALFVTSSENWRKHPAWEEEIFGPQSLIVVCEN 390 (510)
T ss_dssp -------CBCCSSHHHHHHHHHHHHHHHTSTTEEEEECCC-CTTSBCCEEEEEEHHHHHHCGGGGSCCCSSEEEEEEESS
T ss_pred -------CCCCCCHHHHHHHHHHHHHHHhcCCCEEEecCC-CCCEecCEEEEecCCccccCHHHcCCccCCeEEEEEeCC
Confidence 3688889999999999999984 7999964444 4999999999988777 99999999999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEeccCH--HHHHHHHhhc--ccceEEECCCCCC--CCCCCCccC-ccCCCCCCc--chHHHH
Q 011080 403 VEEGIHHCNASNFGLQGCVFTRDI--NKAILISDAM--ETGTVQINSAPSR--GPDHFPFQG-LKDSGIGSQ--GITNSI 473 (494)
Q Consensus 403 ~~eai~~~n~~~~gl~a~v~s~d~--~~~~~~~~~~--~~g~v~iN~~~~~--~~~~~pfgG-~~~SG~g~~--~g~~~l 473 (494)
+||||+++|+++|||+++|||+|. ++++++++++ ++|+|+||+++.. ....+|||| +|.||+|+. +|.+|+
T Consensus 391 ~deai~~aN~~~~gLaa~v~t~d~~~~~a~~~~~~l~~~aG~V~iN~~~~~~~~~~~~pfGG~~~~sG~g~~~~~G~~gl 470 (510)
T 1ez0_A 391 VADMLSLSEMLAGSLTATIHATEEDYPQVSQLIPRLEEIAGRLVFNGWPTGVEVGYAMVHGGPYPASTHSASTSVGAEAI 470 (510)
T ss_dssp HHHHHHHHHTCCCEEEEEEECCGGGHHHHHHHHHHHHTTEEEEEESSCSSCCCCSSSCCCCCSTTSCSCSSCCSSSGGGG
T ss_pred HHHHHHHHhcCCCCeEEEEEccCcCHHHHHHHHHHHhhcccEEEECCCCccCccCCCCCCCCCCCCcCCCCCCCccHHHH
Confidence 999999999999999999999987 7999999999 7999999987642 234589999 799999854 799999
Q ss_pred HHhhceeEEE
Q 011080 474 NMMTKIKSTV 483 (494)
Q Consensus 474 ~~~~~~k~i~ 483 (494)
++|++.|++.
T Consensus 471 ~~~~~~k~~~ 480 (510)
T 1ez0_A 471 HRWLRPVAYQ 480 (510)
T ss_dssp GGGEEEEEEE
T ss_pred HHhheEEEEc
Confidence 9999998763
No 46
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme, 1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase; HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Probab=100.00 E-value=4.1e-86 Score=731.54 Aligned_cols=433 Identities=29% Similarity=0.455 Sum_probs=403.2
Q ss_pred EeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Q 011080 45 VQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKAPIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAE 124 (494)
Q Consensus 45 ~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~ 124 (494)
++.++.+++++++++|++||+.|+.+|..+|.++|+++++.|++++++|++++++|+|||+.+++.|+..+++.+++++.
T Consensus 544 v~~a~~~dv~~Av~aA~~A~~~W~~~~~~eR~~iL~~~ad~l~~~~~eLa~~~~~E~GK~~~ea~~Ev~~ai~~lr~~a~ 623 (1001)
T 3haz_A 544 IADATPDQAHAAVAAARAGFAGWSRTPAGIRAAALEQAAHLLESRSAHFIALLQREGGKTLDDALSELREAADFCRYYAA 623 (1001)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchHHHHHhhHHHHhhcCCEEEEcCCCCChHHHHHHHH
Q 011080 125 EGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVH 204 (494)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~~~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~ 204 (494)
.++++.+..... +. ..+...++.++|+|||++|+|||||+.+.++++++||++||+||+|||+.+|+++..+++
T Consensus 624 ~a~~~~g~~~~~-----~~-~~g~~~~~~~~P~GVV~~I~PwNfPl~i~~~~va~ALAAGNtVVlKPse~tp~ta~~l~e 697 (1001)
T 3haz_A 624 QGRKLFGSETAM-----PG-PTGESNALTMRGRGVFVAISPWNFPLAIFLGQVTAALMAGNSVVAKPAEQTPRIAREAVA 697 (1001)
T ss_dssp HHHHHHSSCEEC-----CC-CTTEEEEEEEEECSEEEEECCSSSTTHHHHHHHHHHHHTTCEEEEECCTTCHHHHHHHHH
T ss_pred HHHhhcCccccc-----cC-CCCCceEEEEeCCcEEEEEcCCCChHHHHHHHHHHHHHcCCEEEEecchhhHHHHHHHHH
Confidence 988877653221 11 125677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHHHHHHc-----CCCceEEecCCcceEEEeCCCCHH
Q 011080 205 CFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGISISKKA-----GMIPLQMELGGKDACIILEDADLD 278 (494)
Q Consensus 205 ~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~v~~~a-----~~~~~~le~gG~~~~iV~~daDl~ 278 (494)
+|.++|+|+|++|+|+|++.+ +..|+.||+|+.|+|||| .+|+.|.+.+ ..+|+++|+|||||+||++|||++
T Consensus 698 ll~eAGlP~gvv~vV~G~g~~-g~~L~~~p~Vd~V~FTGSt~vGr~I~~~aA~~~~~l~pv~lElGGknp~IV~~dADld 776 (1001)
T 3haz_A 698 LLHEAGIPKSALYLVTGDGRI-GAALTAHPDIAGVVFTGSTEVARSINRALAAKDGPIVPLIAETGGINAMIADATALPE 776 (1001)
T ss_dssp HHHHHTCCTTTEEECCCCHHH-HHHHHHCTTCCEEEEESCHHHHHHHHHHHHHSSSCCCCEEEECCCCEEEEECTTSCHH
T ss_pred HHHHhCcCcCcEEEEecCchH-HHHHHhCCCcCEEEecCCHHHHHHHHHHHhcccCCCceEEeecCCcceEEEcCCCCHH
Confidence 999999999999999998777 999999999999999999 9999998864 268999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccccCCC-CCCCCCCccCCHHHHHHHHHHHHHHHHcC
Q 011080 279 LAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTVGAP-EDDCDITPVVTESSANFIEGLVMDAKQKA 357 (494)
Q Consensus 279 ~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~g~p-~~~~~~gpl~~~~~~~~~~~~i~~a~~~G 357 (494)
.|++.+++|+|.|+||.|+++++||||++++|+|+++|+++++++++|+| ++++++||++++.+.+++.++|++++++|
T Consensus 777 ~Aa~~iv~s~f~naGQ~C~A~~rllV~e~i~d~f~~~L~~~~~~l~vGdp~d~~t~~Gpli~~~~~~rv~~~i~~a~~~g 856 (1001)
T 3haz_A 777 QVADDVVTSAFRSAGQRCSALRLLFVQEDVADRMIEMVAGAARELKIGDPSDVATHVGPVIDVEAKQRLDAHIARMKTEA 856 (1001)
T ss_dssp HHHHHHHHHHHGGGGCSTTCEEEEEEEHHHHHHHHHHHHHHHHTCCBSCTTSTTCSBCCCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCCCCCCCceeeccHHHHHHHHHHHHHHHHhcCCCCcccccCccCCCCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999 88999999999999999999999999998
Q ss_pred CEEeecc-cCCCceeecEEEeeCCCCCCCcccccccceeeeEecCC--HHHHHHHHhcCCCCceEEEeccCHHHHHHHHh
Q 011080 358 ATFCQEY-KREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINS--VEEGIHHCNASNFGLQGCVFTRDINKAILISD 434 (494)
Q Consensus 358 a~v~~~~-~~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~--~~eai~~~n~~~~gl~a~v~s~d~~~~~~~~~ 434 (494)
+++++. ...|+|+.|||+.. +++.+++||+||||++|++|++ +||||+++|+++|||+++|||+|.+++.++++
T Consensus 857 -~v~gg~~~~~G~fv~PTvl~~--~~~~~~~eEiFGPVL~V~~~~~~~ldeAI~~aN~t~yGLta~V~T~d~~~a~~~a~ 933 (1001)
T 3haz_A 857 -RLHFAGPAPEGCFVAPHIFEL--TEAGQLTEEVFGPILHVVRYRPENLERVLRAIERTGYGLTLGVHSRIDDSIEAIID 933 (1001)
T ss_dssp -EEEEECCCCSSSCCCCEEEEC--SSGGGCCSCCCSSEEEEEEECGGGHHHHHHHHHHTCCCSEEEEECSCHHHHHHHHH
T ss_pred -eEeccccCCCCcEEeeEEecC--CCHHHHhccccCcEEEEEEeCCCCHHHHHHHHHcCCCCceEEEEcCCHHHHHHHHH
Confidence 775443 24599999999974 6788999999999999999997 79999999999999999999999999999999
Q ss_pred hcccceEEECCCCCCC-CCCCCccCccCCCCC-CcchHHHHHHhhceeEEEEecC
Q 011080 435 AMETGTVQINSAPSRG-PDHFPFQGLKDSGIG-SQGITNSINMMTKIKSTVINLP 487 (494)
Q Consensus 435 ~~~~g~v~iN~~~~~~-~~~~pfgG~~~SG~g-~~~g~~~l~~~~~~k~i~~~~~ 487 (494)
++++|+|+||+.+... ...+||||+|.||+| +++|++++++|++.|+|+++..
T Consensus 934 ~l~aG~V~VN~~~~~~~~~~~PFGG~k~SG~G~~~gG~~gl~~ft~~K~v~~~~~ 988 (1001)
T 3haz_A 934 RVQVGNIYVNRNMIGAVVGVQPFGGNGLSGTGPKAGGPHYLARFATEQTVTINTA 988 (1001)
T ss_dssp HCCCSEEEESSCSCCCCTTTSCBCCCGGGBCCCCBTSTTSGGGGEEEEEEEEECG
T ss_pred hCCeeeEEEeCCCcCCCCCCCCCCCcccCcCCCCCCCHHHHHHhceeeEEEECCc
Confidence 9999999999987643 345799999999999 5789999999999999999854
No 47
>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase, structural genomics, structural genomics CONS SGC, oxidoreductase; 2.25A {Homo sapiens}
Probab=100.00 E-value=2.3e-81 Score=649.11 Aligned_cols=405 Identities=18% Similarity=0.153 Sum_probs=334.1
Q ss_pred EeeCCCCCCceEEEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHh-------CCC
Q 011080 32 TIINPTTRKPHFRVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKAPIAECLVKEI-------AKP 104 (494)
Q Consensus 32 ~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~-------Gk~ 104 (494)
.++||+||+++++++.++.+++++++++|++||+.|+.+|..+|.++|+++++.|++++++|++++++|+ |||
T Consensus 10 ~~~~P~tg~~~~~~~~~~~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~g~~~~~~Gk~ 89 (463)
T 2h5g_A 10 GVDLGTENLYFQSMVKPAGPTVEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEAEGRLAAP 89 (463)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTSCHH
T ss_pred CCcCCCCCCEEEEecCCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcccccCCCc
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999 799
Q ss_pred hH----HHHHHHHHHHHHHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchHHHHHhhHHHH
Q 011080 105 AK----DAVTEVVRSGDLVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPA 180 (494)
Q Consensus 105 ~~----~a~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~~~~~~~~~~a 180 (494)
+. +++.|+..+++.+++++..+.++.+..... ... ..+...++.++|+|||++|+||| |++.+ +++++|
T Consensus 90 ~~~rl~~a~~ev~~~~~~~~~~a~~~~~~~g~~~~~--~~~---~~~~~~~~~~~P~GVv~~I~p~n-P~n~p-~~~a~A 162 (463)
T 2h5g_A 90 LLKRLSLSTSKLNSLAIGLRQIAASSQDSVGRVLRR--TRI---AKNLELEQVTVPIGVLLVIFESR-PDCLP-QVAALA 162 (463)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHCTTSTTCEEEE--EEE---ETTEEEEEEEEECCEEEEEESSC-TTHHH-HHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhhHhhcCccccc--ccC---CCCceeEEEEEcCceEEEEecCC-cHHHH-HHHHHH
Confidence 98 477899999999999998877766543110 000 01345688999999999999887 87777 899999
Q ss_pred hhcCCEEEEcCCCCChHHHHHHHHHHHHc----CCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHHHHHHcC
Q 011080 181 LIAGNSIVLKPPTQGAVAALHMVHCFHLA----GFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGISISKKAG 255 (494)
Q Consensus 181 L~aGN~vvlkps~~~~~t~~~l~~~l~~a----GlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~v~~~a~ 255 (494)
|++||+||+|||+.+|+++.+|+++|.++ | |+|++|+|+| +.+++..|+.||+||.|+|||| .+|+.|.+.++
T Consensus 163 LaaGN~VVlKps~~tp~t~~~l~~l~~~al~~~G-P~gvv~vv~g-~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~~aa 240 (463)
T 2h5g_A 163 IASGNGLLLKGGKEAAHSNRILHLLTQEALSIHG-VKEAVQLVNT-REEVEDLCRLDKMIDLIIPRGSSQLVRDIQKAAK 240 (463)
T ss_dssp HHHTCEEEEECCGGGHHHHHHHHHHHHHHHHTTT-CGGGEEECCT-TCCC-------CCCSEEEEESCHHHHHHHHHHCS
T ss_pred HHcCCEEEEECCCCcHHHHHHHHHHHHHHHHhcC-CCCeEEEEcC-CHHHHHHHHhCCCcCEEEEECCHHHHHHHHHhcC
Confidence 99999999999999999999999999999 9 9999999999 6788999999999999999999 99999999887
Q ss_pred CCceEEecCCcceEEEeCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccccCCCCCCCCCC
Q 011080 256 MIPLQMELGGKDACIILEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTVGAPEDDCDIT 335 (494)
Q Consensus 256 ~~~~~le~gG~~~~iV~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~g~p~~~~~~g 335 (494)
++|+++|+|||||+||++|||++.|++.+++++|.| ||.|++++|||||++++| |
T Consensus 241 l~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~f~n-GQ~C~a~~rvlV~~~i~d------------------------~ 295 (463)
T 2h5g_A 241 GIPVMGHSEGICHMYVDSEASVDKVTRLVRDSKCEY-PAACNALETLLIHRDLLR------------------------T 295 (463)
T ss_dssp SSCBCSCSCCCEEEEECTTCCTTTHHHHHHHHHHSC-TTSTTSEEEEEEEGGGTT------------------------S
T ss_pred CCCEEEecCCcceEEEcCCCCHHHHHHHHHHHhccC-CCccccCcEEEEeccccc------------------------h
Confidence 899999999999999999999999999999999999 999999999999999998 2
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEeeccc--CCCceeecEEEeeCCCCCCCcccccccceeeeEecCCHHHHHHHHhcC
Q 011080 336 PVVTESSANFIEGLVMDAKQKAATFCQEYK--REGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNAS 413 (494)
Q Consensus 336 pl~~~~~~~~~~~~i~~a~~~Ga~v~~~~~--~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~~~eai~~~n~~ 413 (494)
|+ +++++++++++|+++++|.. ..|+|+ +++|++++||+||||++|++|+|+||||+++|++
T Consensus 296 p~--------~~~~i~~~~~~Ga~v~~G~~~~~~g~~~--------~~~~~i~~eE~FgPvl~v~~~~~~deAi~~aN~~ 359 (463)
T 2h5g_A 296 PL--------FDQIIDMLRVEQVKIHAGPKFASYLTFS--------PSEVKSLRTEYGDLELCIEVVDNVQDAIDHIHKY 359 (463)
T ss_dssp HH--------HHHHHHHHHHTTCEEEECHHHHC-----------------CCSSCCCCSSEEEEEEESSHHHHHHHHHHH
T ss_pred HH--------HHHHHHHHHhCCCEEEeCCcccccCccC--------CCCchHHhccccCceEEEEEeCCHHHHHHHHHcC
Confidence 32 23357888889999975543 234443 5789999999999999999999999999999999
Q ss_pred CCCceEEEeccCHHHHHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCC--Cc--chHHHHHHhhceeEEEEecC
Q 011080 414 NFGLQGCVFTRDINKAILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIG--SQ--GITNSINMMTKIKSTVINLP 487 (494)
Q Consensus 414 ~~gl~a~v~s~d~~~~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g--~~--~g~~~l~~~~~~k~i~~~~~ 487 (494)
++||+++|||+|.+++.++++++++|+|+||++.... ..+||||+|+||+| ++ +|.+|+++|++.|+|+++..
T Consensus 360 ~~gLaa~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~-~~~PfGG~k~SG~G~~r~~~~G~~gl~~ft~~K~v~~~~~ 436 (463)
T 2h5g_A 360 GSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTRFS-DGYRFGLGAEVGISTSRIHARGPVGLEGLLTTKWLLRGKD 436 (463)
T ss_dssp CCSSEEEEECSCHHHHHHHHHHCCSSEEEESSCGGGC-STTTTTSSCCSCEECCSSSCCEECCGGGGEEEEEEEECSS
T ss_pred CCCceEEEEeCCHHHHHHHHHhCCeeEEEEeCCccCC-CCCCCCCCccCcCCCCcccCCCHHHHHHhceeEEEEECCC
Confidence 9999999999999999999999999999999876543 45999999999999 65 99999999999999998754
No 48
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.29A {Saccharomyces cerevisiae} SCOP: c.82.1.1
Probab=100.00 E-value=5.9e-79 Score=631.94 Aligned_cols=401 Identities=16% Similarity=0.154 Sum_probs=323.4
Q ss_pred HHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHhCCCh----HHHH-HHHHH-HHHHHHHHHHH
Q 011080 52 EVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKAPIAECLVKEIAKPA----KDAV-TEVVR-SGDLVSYCAEE 125 (494)
Q Consensus 52 ~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~----~~a~-~ev~~-~~~~l~~~~~~ 125 (494)
.+++++++|++||+.|+.++..+|.++|+++++.|++++++|++++++|+|||. .+++ .|+.. +.+.++++++.
T Consensus 15 ~~~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~g~~ea~~~ev~~~~~~~~~~~a~~ 94 (468)
T 1vlu_A 15 SSQQIAKNARKAGNILKTISNEGRSDILYKIHDALKANAHAIEEANKIDLAVAKETGLADSLLKRLDLFKGDKFEVMLQG 94 (468)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCCHHHHHHHCTTSTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccchHHHHHHhhhhHHHHHHHHHH
Confidence 488999999999999999999999999999999999999999999999999999 8885 89988 88999999988
Q ss_pred hHHHhcCccccccCCCCCC--CCCceEEEEeeeceeEEeeCCCCchHHHHHhhHHHHhhcCCEEEEcCCCCChHHHHHHH
Q 011080 126 GVRILGEGKLLVSDSFPGN--ERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVAALHMV 203 (494)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVv~~i~p~n~P~~~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~ 203 (494)
++++.....+. ....+.. ..+...++.++|+|||++|+||| | .+.++++++||++||+||+|||+.+|+++..|+
T Consensus 95 ~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~P~GVV~~I~pwN-P-~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~ 171 (468)
T 1vlu_A 95 IKDVAELEDPV-GKVKMARELDDGLTLYQVTAPVGVLLVIFESR-P-EVIANITALSIKSGNAAILKGGKESVNTFREMA 171 (468)
T ss_dssp HHHHHHSCCSS-SCEEEEEEEETTEEEEEEEEECCEEEEEESSC-T-HHHHHHHHHHHHHTCEEEEECCGGGHHHHHHHH
T ss_pred HHHHhhcCCCC-CeecccccCCCCceeEEEecCcceEEEEeccC-h-HHHHHHHHHHHHcCCEEEEEcCCccHHHHHHHH
Confidence 88876332110 0000100 01345688999999999999999 9 999999999999999999999999999999999
Q ss_pred HHHH----H----cCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHHHHHHcCCCceEEecCCcceEEEeCC
Q 011080 204 HCFH----L----AGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGISISKKAGMIPLQMELGGKDACIILED 274 (494)
Q Consensus 204 ~~l~----~----aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~v~~~a~~~~~~le~gG~~~~iV~~d 274 (494)
+++. + +|+|+|++|+|+ ++.++++.|..||+||.|+|||| .+|+.+.+.+ .+|+++|+|||||+||++|
T Consensus 172 ~l~~~aL~e~~~~aGlP~gvv~vv~-~~~~~g~~L~~~p~vd~I~fTGS~~~g~~i~~~a-~kpv~lElGGk~p~iV~~d 249 (468)
T 1vlu_A 172 KIVNDTIAQFQSETGVPVGSVQLIE-TRQDVSDLLDQDEYIDLVVPRGSNALVRKIKDTT-KIPVLGHADGICSIYLDED 249 (468)
T ss_dssp HHHHHHHHHHHHHHCCCTTSEEECC-CC--CGGGGGCTTTCCEEEEESCHHHHHHHHHTC-CSCBTTBCSCCEEEEECTT
T ss_pred HHHHHHHHhhchhcCCCCCcEEEEC-CHHHHHHHHhhCCCcCEEEEECCHHHHHHHHHhc-CCCEEeecCCccceEECCC
Confidence 9995 8 999999999999 67688999999999999999999 9999999887 7999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhcccc---CCCCCCCCCCccCCHHHHHHHHHH-H
Q 011080 275 ADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTV---GAPEDDCDITPVVTESSANFIEGL-V 350 (494)
Q Consensus 275 aDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~---g~p~~~~~~gpl~~~~~~~~~~~~-i 350 (494)
||++.|++.+++++|.|+| .|++++|||||+++ |+|+++|+++++++++ |||.+ .++ +
T Consensus 250 ADl~~Aa~~i~~~~~~n~G-~C~a~~rvlV~~~i-d~f~~~l~~~~~~~~v~~~Gdp~~----------------~~~~i 311 (468)
T 1vlu_A 250 ADLIKAKRISLDAKTNYPA-GCNAMETLLINPKF-SKWWEVLENLTLEGGVTIHATKDL----------------KTAYF 311 (468)
T ss_dssp CCHHHHHHHHHHTTCC-----CCCCEEEEECTTS-TTHHHHHHHHHHHHCCCBEECHHH----------------HHHHH
T ss_pred CCHHHHHHHHHHHhcCCCC-cCCcCcEEEEECCH-HHHHHHHHHHHHhcCCeecCCHHH----------------hcccc
Confidence 9999999999999999999 99999999999999 9999999999999987 87621 334 5
Q ss_pred HHHHHcCCEE-eecccCCCceeecEEEeeCCCCCCCcccccccceeeeEecCCHHHHHHHHhcCCCCceEEEeccCHHHH
Q 011080 351 MDAKQKAATF-CQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTRDINKA 429 (494)
Q Consensus 351 ~~a~~~Ga~v-~~~~~~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~s~d~~~~ 429 (494)
++++ ++ .+|. | +.||++ +++++++++||+||||++|++|+|+||||+++|+++|||+++|||+|.+++
T Consensus 312 ~~a~----~~~~gG~---g--~~Ptvl--v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a 380 (468)
T 1vlu_A 312 DKLN----ELGKLTE---A--IQCKTV--DADEEQDFDKEFLSLDLAAKFVTSTESAIQHINTHSSRHTDAIVTENKANA 380 (468)
T ss_dssp HHHH----HHTCCCH---H--HHTTBC---------------CCCCEEEECCSHHHHHHHHTTSCSSCEEEEECSCHHHH
T ss_pred cccc----eeeccCC---C--CCCcee--eCCCchhhhcCccCceEEEEEeCCHHHHHHHHHhCCCCceEEEEeCCHHHH
Confidence 5554 23 3332 4 789987 788999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccceEEECCCCCCCCCCCCcc-----CccCCCCCCcchHHHHHHhhceeEEEEecCC
Q 011080 430 ILISDAMETGTVQINSAPSRGPDHFPFQ-----GLKDSGIGSQGITNSINMMTKIKSTVINLPT 488 (494)
Q Consensus 430 ~~~~~~~~~g~v~iN~~~~~~~~~~pfg-----G~~~SG~g~~~g~~~l~~~~~~k~i~~~~~~ 488 (494)
+++++++++|+|+||+++... ...||| |+|.||+|++ |.+|+++|++.|+|+++.+.
T Consensus 381 ~~~~~~l~aG~V~vN~~~~~~-~~~pfG~Gg~~G~~~SG~g~~-G~~gl~~f~~~K~v~~~~~~ 442 (468)
T 1vlu_A 381 EKFMKGVDSSGVYWNASTRFA-DGFRYGFGAEVGISTSKIHAR-GPVGLDGLVSYQYQIRGDGQ 442 (468)
T ss_dssp HHHHHHCCCSEEEESSCGGGC-C-----------------------CCSGGGEEEEEEEECSSC
T ss_pred HHHHHhCCeeEEEEcCCCCCC-CCCCCCCCCCcceecCCCCCC-cchHHHHhcceEEEEECCCC
Confidence 999999999999999877544 448999 9999999999 99999999999999987543
No 49
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 2.00A {Listeria monocytogenes}
Probab=100.00 E-value=8.9e-78 Score=624.64 Aligned_cols=418 Identities=18% Similarity=0.198 Sum_probs=360.5
Q ss_pred EEeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHhCCChHHHHH-HHHHHHHHHHHH
Q 011080 44 RVQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKAPIAECLVKEIAKPAKDAVT-EVVRSGDLVSYC 122 (494)
Q Consensus 44 ~~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~l~~~ 122 (494)
+++.++.+++++++++|++||+.|+.++.++|.++|+++++.|++++++|++++++|+|||..+++. +.....+.+..+
T Consensus 5 ~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~e~~~~~~~~~~~~~~~~ 84 (464)
T 3k9d_A 5 DKDLRSIQEVRNLIESANKAQKELAAMSQQQIDTIVKAIADAGYGAREKLAKMAHEETGFGIWQDKVIKNVFASKHVYNY 84 (464)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHh
Confidence 4556788999999999999999999999999999999999999999999999999999999998764 333333332222
Q ss_pred HHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchHHHHHhhHHHHhhcCCEEEEcCCCCChHHHHHH
Q 011080 123 AEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVAALHM 202 (494)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~~~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l 202 (494)
........ ..+ ...+...+..++|+|||++|+|||||+.+.++++++||++||+||+|||+.+|.++..+
T Consensus 85 -------~~~~~~~g--~~~-~~~~~~~~~~~~P~GVv~~I~P~N~P~~~~~~~~~~ALaaGN~VVlKps~~ap~t~~~l 154 (464)
T 3k9d_A 85 -------IKDMKTIG--MLK-EDNEKKVMEVAVPLGVVAGLIPSTNPTSTVIYKTLISIKAGNSIVFSPHPNALKAILET 154 (464)
T ss_dssp -------HTTCCCSE--EEE-EETTTTEEEEEEECCEEEEEECSSSHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHH
T ss_pred -------hhcccccc--eec-cCCCceeEEEEecceEEEEECCCcChHHHHHHHHHHHHHhCCeEEEECCcchHHHHHHH
Confidence 11111000 000 01245678889999999999999999999999999999999999999999999999886
Q ss_pred H----HHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHHHHHHcCCCceEEecC-CcceEEEeCCCC
Q 011080 203 V----HCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGISISKKAGMIPLQMELG-GKDACIILEDAD 276 (494)
Q Consensus 203 ~----~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~v~~~a~~~~~~le~g-G~~~~iV~~daD 276 (494)
+ +++.++|+|+|++|+|++++.+.++.|++||+||+|+|||| ...+..+ ..+||+ +|+| ||+|+||++|||
T Consensus 155 ~~ll~~~~~~aG~P~gvv~vv~g~~~~~~~~L~~~~~vd~I~fTGs~~v~~~a~--~~~kpv-lelG~G~~p~iV~~dAD 231 (464)
T 3k9d_A 155 VRIISEAAEKAGCPKGAISCMTVPTIQGTDQLMKHKDTAVILATGGSAMVKAAY--SSGTPA-IGVGPGNGPAFIERSAN 231 (464)
T ss_dssp HHHHHHHHHHTTCCTTSEEECSSCCHHHHHHHHHCTTEEEEEECSCHHHHHHHT--TSSSCE-EEBCCCCCEEEECTTSC
T ss_pred HHHHHHHHHHhCCCCCeEEEEeCCCHHHHHHHHhCCCCCEEEEeCChHHHHHHH--hcCCcE-EeeCCCCCeEEECCCCC
Confidence 5 45689999999999999988889999999999999999999 7543322 257998 7888 999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHH-------hccccCCC--CCCCCCCccCCHHHHHHHH
Q 011080 277 LDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKV-------AKLTVGAP--EDDCDITPVVTESSANFIE 347 (494)
Q Consensus 277 l~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~-------~~~~~g~p--~~~~~~gpl~~~~~~~~~~ 347 (494)
++.|++.+++|+|+|+||.|+++++||||+++||+|+++|++++ +.+++|+| ++++++||+++..+++++.
T Consensus 232 l~~Aa~~i~~~~~~n~Gq~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~gp~i~~~~~~~i~ 311 (464)
T 3k9d_A 232 IPRAVKHILDSKTFDNGTICASEQSVVVERVNKEAVIAEFRKQGAHFLSDAEAVQLGKFILRPNGSMNPAIVGKSVQHIA 311 (464)
T ss_dssp HHHHHHHHHHHHTGGGGCSTTSCCEEEEEHHHHHHHHHHHHHTTEEECCHHHHHHHHHHHBCTTSCBCGGGTTCCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCcEEEEeHHHHHHHHHHHHHhhhhhcChhhhhhhcccccCCCCccCcccCHHHHHHHH
Confidence 99999999999999999999999999999999999999999986 45678888 4588999999999999999
Q ss_pred HHHHHHHHcCCEEeecccCCCceeecEEEeeCCCCCCCcccccccceeeeEecCCHHHHH----HHHhcCCCCceEEEec
Q 011080 348 GLVMDAKQKAATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGI----HHCNASNFGLQGCVFT 423 (494)
Q Consensus 348 ~~i~~a~~~Ga~v~~~~~~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~~~eai----~~~n~~~~gl~a~v~s 423 (494)
++++.++.+|++++.++.. ++++++++. +|+||||++|++|+|+|||| +++|+++|||+++|||
T Consensus 312 ~~~~~a~~~ga~vl~gg~~-----------~v~~~~~~~-~E~fgPVl~v~~~~~~~eAi~~ai~~~n~~~~gl~a~i~t 379 (464)
T 3k9d_A 312 NLAGLTVPADARVLIAEET-----------KVGAKIPYS-REKLAPILAFYTAETWQEACELSMDILYHEGAGHTLIIHS 379 (464)
T ss_dssp HHTTCCCCTTCCEEEEECC-----------CCSTTCGGG-SCCCSSEEEEEEESSHHHHHHHHHHHHHHTTTEEEEEEEC
T ss_pred HHhhhhhcCCCEEEEcCCC-----------CCCCCCccc-ccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEEe
Confidence 9999888899998544321 567888865 89999999999999999997 7999999999999999
Q ss_pred cCHHHHHHHHhhcccceEEECCCCCC--------CCCCCCccCccCCCCCCcchHHHHHHhhceeEEEEecC
Q 011080 424 RDINKAILISDAMETGTVQINSAPSR--------GPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVINLP 487 (494)
Q Consensus 424 ~d~~~~~~~~~~~~~g~v~iN~~~~~--------~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~k~i~~~~~ 487 (494)
+|.++++++++++++|+|+||+++.+ .++.+|||| +.+|.|+++|..|++.|++.|+|....+
T Consensus 380 ~d~~~a~~~~~~l~~G~v~vN~~~~~~~~g~~~~~~~~~~~G~-G~~G~g~~~~~~~~~~~~~~k~v~~~~~ 450 (464)
T 3k9d_A 380 EDKEIIREFALKKPVSRLLVNTPGALGGIGATTNLVPALTLGC-GAVGGSSSSDNIGPENLFNIRRIATGVL 450 (464)
T ss_dssp SCHHHHHHHHHHSSEEEEEESSCHHHHHTTSSSSSCCCSCBBC-TGGGTCSCCSBCCGGGSEEEEEEEECCC
T ss_pred CCHHHHHHHHHhCCEeEEEEECCccccccccCCCCCccccccC-cCCCCCcCCCCCCHHHheEEEEEEecCC
Confidence 99999999999999999999998752 345699998 6789999999999999999999987654
No 50
>4ghk_A Gamma-glutamyl phosphate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.25A {Burkholderia thailandensis}
Probab=100.00 E-value=1.2e-76 Score=612.35 Aligned_cols=391 Identities=18% Similarity=0.229 Sum_probs=329.7
Q ss_pred HHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHhCCChH----HHHH--------HHHHHHH
Q 011080 50 QEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKAPIAECLVKEIAKPAK----DAVT--------EVVRSGD 117 (494)
Q Consensus 50 ~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~----~a~~--------ev~~~~~ 117 (494)
.+++++++++|++||+.|+.+|..+|.++|+++++.|++++++|++++++|+||+.. +++. |+..+++
T Consensus 25 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~gk~~~~g~~ea~~~~~~~~~~~v~~~~~ 104 (444)
T 4ghk_A 25 DQYMTDVGRRARRASRSIARASTAAKNAALEAVARAIERDAGALKAANARDVARAKDKGLDAAFVDRLTLSDKALKTMVE 104 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCC------CCSHHHHHCCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhccchHHHHHHhhccHHHHHHHHH
Confidence 588999999999999999999999999999999999999999999999999999853 5553 6778888
Q ss_pred HHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchHHHHHhhHHHHhhcCCEEEEcCCCCChH
Q 011080 118 LVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAV 197 (494)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~~~~~~~~~~aL~aGN~vvlkps~~~~~ 197 (494)
.+++++...+. .+.. ..... ...+...++.++|+|||++|+||| | .+.++++++||++||+||+|||+.+|+
T Consensus 105 ~l~~~a~~~~~-~g~~--~~~~~---~~~~~~~~~~~~P~GVV~~I~p~n-P-~~~~~~~~~ALaaGN~VVlKps~~tp~ 176 (444)
T 4ghk_A 105 GLRQVATLPDP-IGEM--SNLKY---RPSGIQVGQMRVPLGVIGIIYESR-P-NVTIDAAALCLKSGNATILRGGSEALE 176 (444)
T ss_dssp HHHHHHHSCCC-TTCE--EEEEE---CTTSCEEEEEEEECSEEEEECCSC-H-HHHHHHHHHHHHTTCEEEEECCGGGHH
T ss_pred HHHHHHhhccc-cCcc--CCccc---CCCCccceEEEeccEEEEEEeCCC-c-HHHHHHHHHHHHcCCEEEEECCccchH
Confidence 88887765432 1211 10000 012456789999999999999998 8 588999999999999999999999999
Q ss_pred HHHHHHHHH----HHcCCCCCcEEEecCCch-hhHhhhhhCCCccEEEEecc-HHHHHHHHHcCCCceEEecCCcceEEE
Q 011080 198 AALHMVHCF----HLAGFPKGLISCVTGKGS-EIGDFLTMHPSINCISFTGG-DTGISISKKAGMIPLQMELGGKDACII 271 (494)
Q Consensus 198 t~~~l~~~l----~~aGlP~g~i~~v~g~~~-~~~~~L~~~~~v~~v~ftGs-~~~~~v~~~a~~~~~~le~gG~~~~iV 271 (494)
++..|++++ .++|+|+|++|+++|++. +++..|..||+||.|+|||| .+|+.+++.+ .+|+++|+|||||+||
T Consensus 177 t~~~l~~l~~~~l~~aGlP~gvv~vv~g~~~~~~~~~L~~~p~vd~V~fTGs~~vg~~v~~~a-~~pv~lELGGk~p~IV 255 (444)
T 4ghk_A 177 SNTALAKLIGEGLAEAGLPQDTVQVVETADRAAVGRLITMTEYVDVIVPRGGKSLIERLINEA-RVPMIKHLDGICHVYV 255 (444)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEECCCCCTHHHHHHTTCTTTCSEEEECSCHHHHHHHHHHC-CSCBCCCCCCCCEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCcccEEEEeCCCHHHHHHHHhcCCCccEEEEECcHHHHHHHHHhC-CCCEEEEcCCcCeEEE
Confidence 999999987 799999999999998655 57888999999999999999 9999998877 7999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhcccc---CCCCCCCCCCccCCHHHHHHHHH
Q 011080 272 LEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTV---GAPEDDCDITPVVTESSANFIEG 348 (494)
Q Consensus 272 ~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~---g~p~~~~~~gpl~~~~~~~~~~~ 348 (494)
++|||++.|++.+++++|.|+| .|++++|||||++++|+|+++|+++++++++ |||. ..+
T Consensus 256 ~~dADl~~Aa~~i~~~~~~n~G-~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~~~~g~p~----------------~~~ 318 (444)
T 4ghk_A 256 DDRASVTKALTVCDNAKTHRYG-TCNTMETLLVARGIAPAVLSPLGRLYREKGVELRVDAD----------------ARA 318 (444)
T ss_dssp CTTCCHHHHHHHCC----------CCCCCEEEEEGGGHHHHHHHHHHHHHHTTCEEEECHH----------------HHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCc-ccCcCceEEEeHHHHHHHHHHHHHHHHHcCCeecCCHH----------------HHH
Confidence 9999999999999999999999 9999999999999999999999999999887 7652 135
Q ss_pred HHHHHHHcCCEEeecccCCCceeecEEEeeCCCCCCCcccccccceeeeEecCCHHHHHHHHhcCCCCceEEEeccCHHH
Q 011080 349 LVMDAKQKAATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTRDINK 428 (494)
Q Consensus 349 ~i~~a~~~Ga~v~~~~~~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~s~d~~~ 428 (494)
+++++. . | ++ +++++++++||+||||++|++|+|+||||+++|+++|||+++|||+|.++
T Consensus 319 ~i~~a~-~-----------G------~~--~~~~~~~~~eEiFGPVl~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~ 378 (444)
T 4ghk_A 319 VLEAAG-V-----------G------PL--VDATDEDWRTEYLAPVLAIKIVDGIDAAIEHINEYGSHHTDAIVTEDHDR 378 (444)
T ss_dssp HHHHTT-C-----------C------CC--EECCSGGGTCC---CEEEEEEESSHHHHHHHHHHHSCSSEEEEECSBHHH
T ss_pred HHHhcc-c-----------C------cc--cCCCchhhhccccCceEEEEEeCCHHHHHHHHHhCCCCceEEEEeCCHHH
Confidence 555542 1 2 12 34678999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccceEEECCCCCCCCCCCCccCccCCCCC----CcchHHHHHHhhceeEEEEecC
Q 011080 429 AILISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIG----SQGITNSINMMTKIKSTVINLP 487 (494)
Q Consensus 429 ~~~~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g----~~~g~~~l~~~~~~k~i~~~~~ 487 (494)
+.++++++++|+|+||+++... +..||||.++||+| +++|++|+++||+.|+|+++.+
T Consensus 379 a~~~a~~l~aG~V~vN~~~~~~-~~~pfGg~~~sG~g~~~~~~~G~~gl~~~t~~K~v~~~~~ 440 (444)
T 4ghk_A 379 AMRFLREVDSASVMVNASTRFA-DGFEFGLGAEIGISNDKLHARGPVGLEGLTSLKYVVLGHG 440 (444)
T ss_dssp HHHHHHHCCSSEEEEEECGGGC-STTTTTCSCCSEEECCSSSCCEEECGGGGEEEEEEEEEEE
T ss_pred HHHHHHhCCcceEEEcCCCccC-CCCCcCCcccccccCCcccCCChhHHHhhceEEEEEECCC
Confidence 9999999999999999987654 45899999999998 6789999999999999998754
No 51
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Probab=100.00 E-value=1.8e-76 Score=608.06 Aligned_cols=389 Identities=17% Similarity=0.177 Sum_probs=339.3
Q ss_pred HHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHhCCCh----HHHH--------HHHHHHHH
Q 011080 50 QEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKAPIAECLVKEIAKPA----KDAV--------TEVVRSGD 117 (494)
Q Consensus 50 ~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~----~~a~--------~ev~~~~~ 117 (494)
-+++++++++|++||+.|+.+|..+|.++|+++++.|++++++|++++++|+||+. .+++ .|+..+++
T Consensus 13 ~~~~~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~gk~~~~g~~ea~~~~~~~~~~ev~~~~~ 92 (427)
T 1o20_A 13 MDELLEKAKKVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGVKESLVDRLALNDKRIDEMIK 92 (427)
T ss_dssp -CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCCHHHHHHHCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhccccccccHHHHHHHhcCHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999986 5654 68889999
Q ss_pred HHHHHHHHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchHHHHHhhHHHHhhcCCEEEEcCCCCChH
Q 011080 118 LVSYCAEEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAV 197 (494)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~~~~~~~~~~aL~aGN~vvlkps~~~~~ 197 (494)
.+++++...++ .+..... ... ..+...++.++|+|||++|+||| +.+.++++++||++||+||+|||+.+|+
T Consensus 93 ~l~~~a~~~~~-~g~~~~~--~~~---~~~~~~~~~~~P~GVV~~I~p~p--~~~~~~~~~~ALaaGNtVVlKps~~tp~ 164 (427)
T 1o20_A 93 ACETVIGLKDP-VGEVIDS--WVR---EDGLRIARVRVPIGPIGIIYESR--PNVTVETTILALKSGNTILLRGGSDALN 164 (427)
T ss_dssp HHHHHHHSCCC-TTCEEEE--EEC---TTSCEEEEEEEECCCEEEECCSC--THHHHHHHHHHHHTTCCEEEECCGGGHH
T ss_pred HHHHHHhcccc-cCccccc--ccc---CCCceeEEEeecceeEEEEecCC--hHHHHHHHHHHHHcCCEEEEECCHhHHH
Confidence 99998775443 2221110 000 11345688999999999999886 4688899999999999999999999999
Q ss_pred HHHHHHHHHH----HcCCCCCcEEEecCC-chhhHhhhhhCCCccEEEEecc-HHHHHHHHHcCCCceEEecCCcceEEE
Q 011080 198 AALHMVHCFH----LAGFPKGLISCVTGK-GSEIGDFLTMHPSINCISFTGG-DTGISISKKAGMIPLQMELGGKDACII 271 (494)
Q Consensus 198 t~~~l~~~l~----~aGlP~g~i~~v~g~-~~~~~~~L~~~~~v~~v~ftGs-~~~~~v~~~a~~~~~~le~gG~~~~iV 271 (494)
++.+|++++. ++|+|+|++|+++|+ ..+.++.|..||+++.|+|||| .+|+.+.+.+ .+|+++|+|||||+||
T Consensus 165 t~~~l~~l~~~al~eaGlP~gvv~vv~g~~~~~~~~~L~~~~~v~~I~fTGS~~~G~~i~~~a-~~~v~lELGGk~p~iV 243 (427)
T 1o20_A 165 SNKAIVSAIREALKETEIPESSVEFIENTDRSLVLEMIRLREYLSLVIPRGGYGLISFVRDNA-TVPVLETGVGNCHIFV 243 (427)
T ss_dssp HHHHHHHHHHHHHTTSSSCGGGEEECCCCCTHHHHHHTTCTTTCSEEEECSCHHHHHHHHHHC-SSCBCCCCCCCEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCcccEEEecCCChHHHHHHHhCCCCccEEEeCCChHHHHHHHHhc-CCCEEEecCCCceEEE
Confidence 9999999997 789999999999984 4567899999999999999999 9999999888 6999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccccCCCCCCCCCCccCCHHHHHHHHHHHH
Q 011080 272 LEDADLDLAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTVGAPEDDCDITPVVTESSANFIEGLVM 351 (494)
Q Consensus 272 ~~daDl~~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~g~p~~~~~~gpl~~~~~~~~~~~~i~ 351 (494)
++|||++.|++.+++++|.|+| .|++++|||||++++|+|+++|++++++++++
T Consensus 244 ~~dADl~~Aa~~i~~~~f~n~G-~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~~------------------------- 297 (427)
T 1o20_A 244 DESADLKKAVPVIINAKTQRPG-TCNAAEKLLVHEKIAKEFLPVIVEELRKHGVE------------------------- 297 (427)
T ss_dssp CTTSCHHHHHHHHHHHHHSCTT-STTSEEEEEEEHHHHHHHHHHHHHHHHHTTCE-------------------------
T ss_pred eCCCCHHHHHHHHHHHhccCCC-CCCCccEEEEehhhHHHHHHHHHHHHHHcCCe-------------------------
Confidence 9999999999999999999999 99999999999999999999999999987542
Q ss_pred HHHHcCCEEeecccCCCceeecEEEeeCCCCCCCcccccccceeeeEecCCHHHHHHHHhcCCCCceEEEeccCHHHHHH
Q 011080 352 DAKQKAATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTRDINKAIL 431 (494)
Q Consensus 352 ~a~~~Ga~v~~~~~~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~s~d~~~~~~ 431 (494)
+.++....+ |+ ||| +++++++++||+||||++|++|+|+||||+++|+++|||+++|||+|.+++.+
T Consensus 298 --------~~gg~~~~~-~~-Ptl---~~~~~~i~~eEiFGPVl~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~ 364 (427)
T 1o20_A 298 --------VRGCEKTRE-IV-PDV---VPATEDDWPTEYLDLIIAIKVVKNVDEAIEHIKKYSTGHSESILTENYSNAKK 364 (427)
T ss_dssp --------EEECHHHHH-HS-TTS---EECCGGGTTCCCCSSEEEEEEESSHHHHHHHHHHHCCSSEEEEECSCHHHHHH
T ss_pred --------eecChhhhh-hC-Ccc---cCCCcchhhcccccceEEEEEECCHHHHHHHHHhCCCCCeEEEEeCCHHHHHH
Confidence 111111112 33 885 34578899999999999999999999999999999999999999999999999
Q ss_pred HHhhcccceEEECCCCCCCCCCCCccCccCCCCC----CcchHHHHHHhhceeEEEEecC
Q 011080 432 ISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIG----SQGITNSINMMTKIKSTVINLP 487 (494)
Q Consensus 432 ~~~~~~~g~v~iN~~~~~~~~~~pfgG~~~SG~g----~~~g~~~l~~~~~~k~i~~~~~ 487 (494)
+++++++|+|+||++.... ...||||.|+||+| +++|++|+++|++.|+|+++.+
T Consensus 365 ~~~~l~~G~V~iN~~~~~~-~~~pfGg~~~SG~g~~~~~~~g~~gl~~~~~~k~v~~~~~ 423 (427)
T 1o20_A 365 FVSEIDAAAVYVNASTRFT-DGGQFGFGAEIGISTQRFHARGPVGLRELTTYKFVVLGEY 423 (427)
T ss_dssp HHHHCCSSEEEESSCGGGC-STTTTTCSCCSCEECSSSSCCEECCTGGGEEEEEEEECSS
T ss_pred HHHhCCccEEEECCCCccC-CCCCCCCcccccccCCcccCCChHHHHHHhceEEEEECCC
Confidence 9999999999999876543 45899999999997 4679999999999999988764
No 52
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG, structural genomics, midwest center for STR genomics; 2.30A {Vibrio parahaemolyticus}
Probab=100.00 E-value=1.2e-74 Score=599.22 Aligned_cols=413 Identities=18% Similarity=0.222 Sum_probs=334.8
Q ss_pred EeCCCHHHHHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHhCCChHHHHH-HHHHHHHHHHHHH
Q 011080 45 VQACTQEEVNKVVETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKAPIAECLVKEIAKPAKDAVT-EVVRSGDLVSYCA 123 (494)
Q Consensus 45 ~~~~~~~~v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~l~~~~ 123 (494)
++.++.+++++++++|++||+.|+.++.++|.++|+++++.|++++++|++++++|+|||..+++. |+..+.+.+..
T Consensus 1 ~~~a~~~~v~~av~~A~~A~~~w~~~~~~~R~~il~~~a~~l~~~~~~la~~~~~e~Gk~~~e~~~~~~~~a~~~~~~-- 78 (452)
T 3my7_A 1 MPVTNMAELDAMIARVKKAQEEFATYSQEQVDKIFRAASLAANQARIPLAQQAVEESGMGIVEDKVIKNHFASEFIYN-- 78 (452)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH--
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH--
Confidence 357899999999999999999999999999999999999999999999999999999999999985 55555544421
Q ss_pred HHhHHHhcCccccccCCCCCCCCCceEEEEeeeceeEEeeCCCCchHHHHHhhHHHHhhcCCEEEEcCCCCChHHHHHHH
Q 011080 124 EEGVRILGEGKLLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVAALHMV 203 (494)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n~P~~~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~ 203 (494)
++...... ...+. ......+..++|+|||++|+|||||+.+.++++++||++||+||+|||+.+|.++..++
T Consensus 79 -----~~~~~~~~--g~~~~-~~~~~~~~~~~P~GVv~~I~P~N~P~~~~~~k~~~ALaaGN~VVlKps~~tp~~~~~~~ 150 (452)
T 3my7_A 79 -----KYKDEQTC--GILEE-DDNLGTMTIAEPVGIICGIVPTTNPTSTAIFKSLISLKTRNGIIFSPHPRAKNSTNDAA 150 (452)
T ss_dssp -----HHTTCCCS--EEC--------CEEEEEECCEEEEEECTTSTTHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHH
T ss_pred -----Hhhhcccc--ccccC-CCCCceEEEecCceEEEEEcCCCChHHHHHHHHHHHHhcCCeEEEEcCCCchHHHHHHH
Confidence 11111100 00111 12345678899999999999999999999999999999999999999999999999888
Q ss_pred HHHH----HcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc-HHHHHHHHHcCCCceEEecCCcceEEEeCCCCHH
Q 011080 204 HCFH----LAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG-DTGISISKKAGMIPLQMELGGKDACIILEDADLD 278 (494)
Q Consensus 204 ~~l~----~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs-~~~~~v~~~a~~~~~~le~gG~~~~iV~~daDl~ 278 (494)
+++. ++|+|+|++|+|++++.+.++.|++||+|++|+|||| ..++..+ ...||+++|+|||+|+||++|||++
T Consensus 151 ~~~~~a~~~aG~P~gvv~~v~g~~~~~~~~L~~~p~v~~V~fTGs~~~~~~a~--~~~kp~~~e~gG~~p~iV~~dADl~ 228 (452)
T 3my7_A 151 KLVLDAAVAAGAPKDIIGWIDQPSVELSNALMKHDDIALILATGGPGMVKAAY--SSGKPAIGVGAGNVPVVIDETADIK 228 (452)
T ss_dssp HHHHHHHHHTTCCTTSEEECSSCCHHHHHHHHHCTTCCEEEECSCHHHHHHHH--TSSSCEEECC--CEEEEECTTSCHH
T ss_pred HHHHHHHHHcCCCcCcEEEEcCCCHHHHHHHHhCCCccEEEEECcHHHHHHHH--hcCCCEEecCCCCCeEEEeCCCCHH
Confidence 8765 7999999999999988899999999999999999999 7655322 3579999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCccCccEEEEccchHHHHHHHHHHHHhccccCCCCCCCCCCccCCHHHHHHHHHHHHHHHHcCC
Q 011080 279 LAAANIVKGGFSYSGQRCTAVKVALVMESVADTLVEKVKAKVAKLTVGAPEDDCDITPVVTESSANFIEGLVMDAKQKAA 358 (494)
Q Consensus 279 ~aa~~i~~~~~~~~Gq~C~a~~~v~V~~~~~~~f~~~l~~~~~~~~~g~p~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga 358 (494)
.|++.+++|+|+|+||.|+++++||||+++||+|+++|+++ .||++++.+.+++.++++++...|+
T Consensus 229 ~Aa~~iv~s~~~~~GQ~C~a~~rv~V~~~i~d~f~~~l~~~--------------~gpli~~~~~~~v~~~i~~~~~~~a 294 (452)
T 3my7_A 229 RAVASVLMSKTFDNGVVCASEQAVIVVDEVYDEVKERFASH--------------KAHVLSKTDADKVRKVLLIDGALNA 294 (452)
T ss_dssp HHHHHHHHGGGGGGGCCTTCEEEEEEEGGGHHHHHHHHHTT--------------TEEECCHHHHHHHHHHHEETTEECG
T ss_pred HHHHHHHHHHhCCCCCccCCCcEEEEcHHHHHHHHHHHHHh--------------CCCcCCHHHHHHHHHHHHhhcccCC
Confidence 99999999999999999999999999999999999999864 3899999999999999987666777
Q ss_pred EEeeccc-----CCCceeecEE-------EeeCCCCCCCcccccccceeeeEecCCHHHHHHHHhcCC----CCceEEEe
Q 011080 359 TFCQEYK-----REGNLIWPLL-------LDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASN----FGLQGCVF 422 (494)
Q Consensus 359 ~v~~~~~-----~~g~~~~Ptv-------l~~~~~~~~~~~~E~fgPvl~v~~~~~~~eai~~~n~~~----~gl~a~v~ 422 (494)
+++++.. ..|+|++||+ +.++++++++++ |+||||++|++|+|+||||+++|++. |||+++||
T Consensus 295 ~v~G~~~~~~~~~~G~~v~pt~~vl~~~~~~~v~~~~~~~~-E~FgPVl~v~~~~~~~eAi~~an~~~~~~g~Glta~i~ 373 (452)
T 3my7_A 295 KIVGQPATAIAEMAGVKVPADTKVLIGEGLGKVSYDDAFAH-EKLSPTLGMFRADNFEDAVAQAVTMVEIGGIGHTSGLY 373 (452)
T ss_dssp GGTTCCHHHHHHHHTCCCCTTCCEEEEECSSSCCTTCGGGS-CCSSSEEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred eEecCccchhHHhCCceeCCCeeEEeeccccCCCCcchhhc-CccCcEEEEEEeCCHHHHHHHHHhcccccCCCCEEEEE
Confidence 7764432 3589999997 567888999875 89999999999999999999999974 99999999
Q ss_pred ccCHHHHHH---HHhhcccceEEECCCCCCCCCCCCcc-CccC---CCCCCcch-----HHHHHHhhceeEEEE
Q 011080 423 TRDINKAIL---ISDAMETGTVQINSAPSRGPDHFPFQ-GLKD---SGIGSQGI-----TNSINMMTKIKSTVI 484 (494)
Q Consensus 423 s~d~~~~~~---~~~~~~~g~v~iN~~~~~~~~~~pfg-G~~~---SG~g~~~g-----~~~l~~~~~~k~i~~ 484 (494)
|+|.+.+++ +++++++|+|+||+++.++..+.-+. +... -|+|++|| .-+.+.+.+.|+|..
T Consensus 374 t~d~~~a~~i~~~a~~l~~G~V~VN~~~~~Gg~G~~~~f~~~~~~t~g~g~~Gg~~~~~nv~~~~l~n~~~v~~ 447 (452)
T 3my7_A 374 TNQDVNADRIRYFGDKMKTARILINIPTTHGGIGDLYNFNVAPSLTLGCGSWGGNSISENVGPKHLINKKTVAK 447 (452)
T ss_dssp SCTTTCHHHHHHHHHHCCCSEEEESCCCC----------------------------CCCCCGGGGEEEEEEEC
T ss_pred cCCHHHHHHHHHHHHhCCEEEEEECCCCCCcccccccccCcCceEeeeccccCCCccCCCCChhHeeeeeEEEe
Confidence 999877777 99999999999998754322111111 1111 15555544 347788888888754
No 53
>4gic_A HDH, histidinol dehydrogenase; protein structure initiative, STR genomics, PSI-biology, NEW YORK structural genomics researc consortium; 2.05A {Methylococcus capsulatus}
Probab=97.61 E-value=0.056 Score=53.39 Aligned_cols=254 Identities=15% Similarity=0.206 Sum_probs=138.9
Q ss_pred CceEEEEeeeceeEEeeCCCC---chHHHHHhhHHHHhhcCCE--EEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecC
Q 011080 147 TKYCLTSKIPLGVVLAIPPFN---YPVNLAVSKIAPALIAGNS--IVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTG 221 (494)
Q Consensus 147 ~~~~~~~~~P~GVv~~i~p~n---~P~~~~~~~~~~aL~aGN~--vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g 221 (494)
+.....++.|+--|++..|.- ||-..+ ...+||-.+|.. |+.-|.+.... ...+.-+...+|+.+ +--+ |
T Consensus 120 G~~~g~~~~Pi~~VGlYVPGG~A~ypSsvL-M~aiPAkVAGV~~Iv~~tPp~~G~i-~p~iL~AA~l~Gv~e--Iy~v-G 194 (423)
T 4gic_A 120 GTLLGQKITPLDRVGLYVPGGKAAYPSSVL-MNAVPAKVAGVPELIMAVPAPRGEL-NALVLAAAYISGVDR--VFRI-G 194 (423)
T ss_dssp SCEEEEEEEECSEEEEECCCSTTCCHHHHH-HHHHHHHHHTCSEEEEECCCGGGCC-CHHHHHHHHHHTCCE--EECC-C
T ss_pred CCEEEEEEEEecceeEEeeCCCCchhhHHH-HhhccHHHhCCCeEEEecCCCCCCc-cHHHHHHHHhcCCcE--EEEc-C
Confidence 566677889999999999944 665544 457899999986 33455443222 222334456677754 2222 2
Q ss_pred CchhhHhhhhh----CCCccEEEEecc-HHHHHHHHH--cCCCceEEecCCcce--EEEeCCCCHHHHHHHHHHHHhhcc
Q 011080 222 KGSEIGDFLTM----HPSINCISFTGG-DTGISISKK--AGMIPLQMELGGKDA--CIILEDADLDLAAANIVKGGFSYS 292 (494)
Q Consensus 222 ~~~~~~~~L~~----~~~v~~v~ftGs-~~~~~v~~~--a~~~~~~le~gG~~~--~iV~~daDl~~aa~~i~~~~~~~~ 292 (494)
|.+.-.+|.- -|.||.|+=.|. -+. .+++ .+..-+=+.- |-+= +|-++++|.+..+..++.-+=+..
T Consensus 195 -GAQAIAAlAyGTetI~~VDkIvGPGN~yVa--~AKr~v~g~VgIDm~A-GPSEilViAD~~a~p~~vAaDLlsQAEHd~ 270 (423)
T 4gic_A 195 -GAQAVAALAYGTETVPRVDKIVGPGNIYVA--TAKKLVFGQVGIDMVA-GPSEILVISDGRTDPDWIAMDLFSQAEHDE 270 (423)
T ss_dssp -HHHHHHHHHHCCSSSCCCSEEECCCCHHHH--HHHHHHBTTBEECCCC-CCCEEEEEECSCSCHHHHHHHHHHHHTTCT
T ss_pred -ChhhhhhhccCCCcccceeEEecCCcHHHH--HHHHHhcCCcCccccc-ccceEEEEeCCCCCHHHHHHHHHHhhccCC
Confidence 3333233332 578999986776 222 2222 2322222222 3332 344456899998888877654433
Q ss_pred CCCccCccEEEEccc--hHHHHHHHHHHHHhccccCCCCCCCCCCccCCHHHHHHHHHHHHHHHH-cCCEEeecccCCCc
Q 011080 293 GQRCTAVKVALVMES--VADTLVEKVKAKVAKLTVGAPEDDCDITPVVTESSANFIEGLVMDAKQ-KAATFCQEYKREGN 369 (494)
Q Consensus 293 Gq~C~a~~~v~V~~~--~~~~f~~~l~~~~~~~~~g~p~~~~~~gpl~~~~~~~~~~~~i~~a~~-~Ga~v~~~~~~~g~ 369 (494)
. .+.++|..+ ..++..+++.+.++.+. .. +.+..+.. .|
T Consensus 271 ----~-a~~iLvT~s~~la~~V~~~i~~~l~~l~--------------r~-------~i~~~sl~~~g------------ 312 (423)
T 4gic_A 271 ----D-AQAILISPDAAHLEAVQASIERLLPGME--------------RA-------EVIRTSLERRG------------ 312 (423)
T ss_dssp ----T-CEEEEEESCHHHHHHHHHHHHHHGGGCT--------------TH-------HHHHHHHHHHC------------
T ss_pred ----C-CeEEEEeCcHHHHHHHHHHHHHHHhhCc--------------cH-------HHHHHHHhcCc------------
Confidence 2 344566554 23344444444444331 11 12222221 12
Q ss_pred eeecEEEeeCCCCCCCcccccccceeeeEecCCHHHHHHHHhcCCCCceEEEeccCHHHHHHHHhhcc-cceEEECCCCC
Q 011080 370 LIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAME-TGTVQINSAPS 448 (494)
Q Consensus 370 ~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~~-~g~v~iN~~~~ 448 (494)
.++.++|++|+++++|..-.= ..-|.++|+. .+..+++ +|.|++..++.
T Consensus 313 --------------------------~ii~v~~~~ea~~~~N~~APE-HLel~~~~~~---~~l~~i~nAGaIFlG~~tp 362 (423)
T 4gic_A 313 --------------------------GMILVDDLEQAAAVANRIAPE-HLELSVESPE---VLVESIRNAGAIFMGRYTA 362 (423)
T ss_dssp --------------------------EEEECSSHHHHHHHHHHHCCS-EEEEESSCHH---HHGGGCCCCSEEEEC----
T ss_pred --------------------------eEEEEeehHHHHHHHHhhChH-HhhhhhCCHH---HHHhhCcEeceeecCCCCc
Confidence 245679999999999995443 5677888864 5666765 99999988654
Q ss_pred C--------CCCCCCccCccCCCCCCcchHHHHHHhhceeEE
Q 011080 449 R--------GPDHFPFQGLKDSGIGSQGITNSINMMTKIKST 482 (494)
Q Consensus 449 ~--------~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~k~i 482 (494)
- .+.-+|.+|. .|..+.-+...|.+.-++
T Consensus 363 ~~~GDY~aG~NHvLPT~G~-----Ar~~sgLsv~~F~K~~s~ 399 (423)
T 4gic_A 363 EALGDYCAGPNHVLPTSGT-----ARFSSPLGVYDFQKRSSL 399 (423)
T ss_dssp ------------CCCCTTG-----GGTCCCCCGGGGEEEEEE
T ss_pred hhhhhcCcCCCccCCCCCc-----ccccCCCCHHHeeeeeeE
Confidence 1 1222555554 444444566777765443
No 54
>1kae_A HDH, histidinol dehydrogenase; L-histidinol dehydrogenase, homodimer, rossman fold, 4 domai L-histidine biosynthesis, NAD cofactor; HET: HSO NAD; 1.70A {Escherichia coli} SCOP: c.82.1.2 PDB: 1k75_A* 1kah_A* 1kar_A
Probab=97.19 E-value=0.21 Score=49.47 Aligned_cols=324 Identities=16% Similarity=0.150 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHHHHcHHHHHHHHHHHhCCCh----HHHHHHHH--------HHHHHHHHHHHHhHHHhcCccccccCCC
Q 011080 74 KRAELLHKAAAILKEQKAPIAECLVKEIAKPA----KDAVTEVV--------RSGDLVSYCAEEGVRILGEGKLLVSDSF 141 (494)
Q Consensus 74 ~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~----~~a~~ev~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 141 (494)
+-.+..+.+.+.++.+.|+-....++...+.. .-...|+. ...+.++...+..++.+....+. +..
T Consensus 31 ~v~~~V~~Ii~~Vr~~GD~Al~~yt~kFD~~~~~~l~Vs~~ei~~A~~~~~~~~~~ai~~A~~nI~~fH~~Q~~~--~~~ 108 (434)
T 1kae_A 31 SITRTVNDILDNVKARGDEALREYSAKFDKTTVTALKVSAEEIAAASERLSDELKQAMAVAVKNIETFHTAQKLP--PVD 108 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSCSSCCCCSBCCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCCC--CEE
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHhcCCCccccccCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC--Cce
Confidence 44455556666666666555444444433211 11112222 12333444445555555443221 000
Q ss_pred CCCCCCceEEEEeeeceeEEeeCCC---CchHHHHHhhHHHHhhcCCEEEE--cCCCCChHHHHHHHHHHHHcCCCCCcE
Q 011080 142 PGNERTKYCLTSKIPLGVVLAIPPF---NYPVNLAVSKIAPALIAGNSIVL--KPPTQGAVAALHMVHCFHLAGFPKGLI 216 (494)
Q Consensus 142 ~~~~~~~~~~~~~~P~GVv~~i~p~---n~P~~~~~~~~~~aL~aGN~vvl--kps~~~~~t~~~l~~~l~~aGlP~g~i 216 (494)
.....+.....++.|+.-|++..|. -||-..+ ...+||-.+|+.=|+ -|..-.| .+.-+.+.+|+.+ |
T Consensus 109 ~~~~~Gv~~gq~~~Pi~rvGlYVPGG~a~ypSsvL-M~aiPAkVAGV~~Iv~~tPp~i~p----~iL~AA~l~Gv~e--I 181 (434)
T 1kae_A 109 VETQPGVRCQQVTRPVASVGLYIPGGSAPLFSTVL-MLATPASIAGCKKVVLCSPPPIAD----EILYAAQLCGVQD--V 181 (434)
T ss_dssp EEEETTEEEEEEEEECSEEEEECCCSSSCCTHHHH-HHHHHHHHHTCSEEEEEECSSCCH----HHHHHHHHTTCCE--E
T ss_pred EEecCCcEEEEEEeehheEEEEecCCCCCchhHHH-HhhccHhhcCCCeEEEECCCCCCH----HHHHHHHHcCCCE--E
Confidence 0012245566778899999999996 4665444 457899999987554 4432222 2333456777754 3
Q ss_pred EEecCCchhhHhhhh----hCCCccEEEEecc---HHHHHHHHH-cCCCceEEecCCcce--EEEeCCCCHHHHHHHHHH
Q 011080 217 SCVTGKGSEIGDFLT----MHPSINCISFTGG---DTGISISKK-AGMIPLQMELGGKDA--CIILEDADLDLAAANIVK 286 (494)
Q Consensus 217 ~~v~g~~~~~~~~L~----~~~~v~~v~ftGs---~~~~~v~~~-a~~~~~~le~gG~~~--~iV~~daDl~~aa~~i~~ 286 (494)
--+ | |.+.-.+|. .-|.||.|+=.|. ..++++... .+..-+=+.- |-+= +|-+++||.+..+..++.
T Consensus 182 y~v-G-GAQAIAAlAyGTetIp~VDkI~GPGN~yVa~AKr~Vs~~~G~VgIDm~A-GPSEilViAD~tAnp~~vAaDLLs 258 (434)
T 1kae_A 182 FNV-G-GAQAIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDMPA-GPSEVLVIADSGATPDFVASDLLS 258 (434)
T ss_dssp EEC-C-HHHHHHHHHHCCSSSCCCSEEECCCCHHHHHHHHHHHHCTTSCEESCCC-CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred eec-c-cHHHHHHHHcCCCCCCCccEEECCCcHHHHHHHHHhHhhcCccccCCCC-CCceEEEEeCCCCCHHHHHHHHHH
Confidence 323 2 333222222 2578999987777 234444321 2211111111 3333 344556899998888877
Q ss_pred HHhhccCCCccCccEEEEccc--hHHHHHHHHHHHHhccccCCCCCCCCCCccCCHHHHHHHHHHHHHHHHcCCEEeecc
Q 011080 287 GGFSYSGQRCTAVKVALVMES--VADTLVEKVKAKVAKLTVGAPEDDCDITPVVTESSANFIEGLVMDAKQKAATFCQEY 364 (494)
Q Consensus 287 ~~~~~~Gq~C~a~~~v~V~~~--~~~~f~~~l~~~~~~~~~g~p~~~~~~gpl~~~~~~~~~~~~i~~a~~~Ga~v~~~~ 364 (494)
-+=... . .+.++|..+ ..++..+++.+.+..+. . .+.++.+.
T Consensus 259 QAEHd~----~-a~aiLvT~s~~la~~V~~ev~~ql~~lp--------------r-------~~ia~~sl---------- 302 (434)
T 1kae_A 259 QAEHGP----D-SQVILLTPAADMARRVAEAVERQLAELP--------------R-------AETARQAL---------- 302 (434)
T ss_dssp HHTTCT----T-CEEEEEESCHHHHHHHHHHHHHHHTTCT--------------T-------HHHHHHHH----------
T ss_pred HhccCC----C-CcEEEEECCHHHHHHHHHHHHHHHHhCC--------------h-------HHHHHHHH----------
Confidence 654332 3 344555554 23444444444444331 1 11222222
Q ss_pred cCCCceeecEEEeeCCCCCCCcccccccceeeeEecCCHHHHHHHHhcCCCCceEEEeccCHHHHHHHHhhc-ccceEEE
Q 011080 365 KREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTRDINKAILISDAM-ETGTVQI 443 (494)
Q Consensus 365 ~~~g~~~~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~~~eai~~~n~~~~gl~a~v~s~d~~~~~~~~~~~-~~g~v~i 443 (494)
..- .++.++|++||++++|..-.= ..-|.++|+ +.+..++ ++|.|++
T Consensus 303 ---------------------------~~~-~ii~v~~l~ea~~~~N~~APE-HLel~~~dp---~~~l~~I~nAGaIFl 350 (434)
T 1kae_A 303 ---------------------------NAS-RLIVTKDLAQCVEISNQYGPE-HLIIQTRNA---RELVDSITSAGSVFL 350 (434)
T ss_dssp ---------------------------TTC-EEEECSSHHHHHHHHHHHCCS-EEEEESTTH---HHHGGGCCSCSEEEE
T ss_pred ---------------------------HcC-eEEEECCHHHHHHHHHHhhhH-hhhhhhcCH---HHHHhhcCcccchhc
Confidence 112 466789999999999995443 577888887 4556666 5999999
Q ss_pred CCCCC--------CCCCCCCccCccCCCCCCcchHHHHHHhhceeEE
Q 011080 444 NSAPS--------RGPDHFPFQGLKDSGIGSQGITNSINMMTKIKST 482 (494)
Q Consensus 444 N~~~~--------~~~~~~pfgG~~~SG~g~~~g~~~l~~~~~~k~i 482 (494)
..++. +.+.-+|-+|.- |..+.-+.+.|++.-++
T Consensus 351 G~~tpe~~GDY~aG~NHvLPT~G~A-----R~~sgLsV~~F~K~~s~ 392 (434)
T 1kae_A 351 GDWSPESAGDYASGTNHVLPTYGYT-----ATCSSLGLADFQKRMTV 392 (434)
T ss_dssp STTCCHHHHHHTSSSCCCCCCTTGG-----GTCCCSCGGGGEEEEEE
T ss_pred CCCCchhhcccccCCCcccCCCCce-----eccCCCcHHhccceeeE
Confidence 98765 123336766654 33344566677765443
No 55
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=46.86 E-value=49 Score=25.37 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=19.6
Q ss_pred ceeeeEecCCHHHHHHHHhcCCC
Q 011080 393 PVLPVIRINSVEEGIHHCNASNF 415 (494)
Q Consensus 393 Pvl~v~~~~~~~eai~~~n~~~~ 415 (494)
+-+.|+.|+|.++|.++.|+.+|
T Consensus 54 ~~~viieFpS~~aa~~~~~s~~Y 76 (99)
T 2fiu_A 54 ARNVVIEFPSVQHAIDCYNSPEY 76 (99)
T ss_dssp SEEEEEEESSHHHHHHHHHSHHH
T ss_pred CeEEEEECCCHHHHHHHHcCHHH
Confidence 37889999999999999997544
No 56
>3v42_A Folliculin; tumor suppressor, protein binding; 2.00A {Homo sapiens}
Probab=44.07 E-value=26 Score=31.51 Aligned_cols=63 Identities=13% Similarity=0.167 Sum_probs=43.5
Q ss_pred HhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhCCCccEEEEecc
Q 011080 174 VSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPSINCISFTGG 244 (494)
Q Consensus 174 ~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~~~v~~v~ftGs 244 (494)
+..++..+.+||-||++.+. +.....+..+|... +|.+.++++... .+- .. .-..+.+.++.+
T Consensus 21 F~~l~~~vl~GnQiIVrg~~--~~~~~s~~~~L~~l-LP~~c~~l~~~s-~~Y---~~-~~~cnilgls~~ 83 (226)
T 3v42_A 21 FRMLAWHVLMGNQVIWKSRD--VDLVQSAFEVLRTM-LPVGCVRIIPYS-SQY---EE-AYRCNFLGLSPH 83 (226)
T ss_dssp HHHHHHHHHHTCEEEEECSC--HHHHHHHHHHHGGG-SCGGGCCEEEEE-SSC---CC-TTTCSEEEECTT
T ss_pred HHHHHHHHhcCCEEEEEcCC--HHHHHHHHHHHHHh-CCHHHHhccccc-hhh---cc-hhheeeecCCCC
Confidence 34567788999999999987 55566667777776 999999998652 221 11 123466766666
No 57
>2zfz_A Arginine repressor; DNA binding protein, core, oligomeriza domain, alpha/beta topology, structural genomics; HET: ARG; 1.85A {Mycobacterium tuberculosis} PDB: 3bue_A 3cag_A*
Probab=39.85 E-value=47 Score=24.33 Aligned_cols=36 Identities=25% Similarity=0.522 Sum_probs=29.7
Q ss_pred cCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCC
Q 011080 183 AGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGK 222 (494)
Q Consensus 183 aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~ 222 (494)
++|-+|+|..|-. +..++.++....+|+ ++..|-|+
T Consensus 20 ~~n~vVikT~PG~---A~~vA~~iD~~~~~e-IlGTIAGD 55 (79)
T 2zfz_A 20 SGNLAVLRTPPGA---AHYLASAIDRAALPQ-VVGTIAGD 55 (79)
T ss_dssp ETTEEEEECSTTC---HHHHHHHHHHHCCTT-EEEEEECS
T ss_pred cCCEEEEEeCCCc---HHHHHHHHHhCCCCC-eEEEEecC
Confidence 7999999988654 677888888888876 89999885
No 58
>1b4b_A Arginine repressor; core, oligomerization domain, helix TUR; HET: ARG; 2.20A {Geobacillus stearothermophilus} SCOP: d.74.2.1
Probab=38.44 E-value=43 Score=23.98 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=29.5
Q ss_pred cCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCC
Q 011080 183 AGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGK 222 (494)
Q Consensus 183 aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~ 222 (494)
++|-+|+|..|-. +..++.++.+.++|+ ++..+-|+
T Consensus 12 ~~n~vVikT~pG~---A~~va~~iD~~~~~e-I~GTIAGD 47 (71)
T 1b4b_A 12 TGNLLVLRTLPGN---AHAIGVLLDNLDWDE-IVGTICGD 47 (71)
T ss_dssp ETTEEEEEESTTC---HHHHHHHHHHHCCTT-EEEEEECS
T ss_pred cCCEEEEEeCCCc---HHHHHHHHHhCCCCC-eEEEEeeC
Confidence 6899999987644 677888888888877 89999885
No 59
>2p5m_A Arginine repressor; alpha-beta, L-arginine binding domain, DNA binding protein; HET: ARG; 1.95A {Bacillus subtilis} SCOP: d.74.2.1
Probab=35.58 E-value=43 Score=24.82 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=29.5
Q ss_pred cCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCC
Q 011080 183 AGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGK 222 (494)
Q Consensus 183 aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~ 222 (494)
++|-+|+|..|-. +..++.++...++|+ ++..|-|+
T Consensus 24 ~~n~vVikT~PG~---A~~vA~~iD~~~~~e-IlGTIAGD 59 (83)
T 2p5m_A 24 ASHMIVLKTMPGN---AQAIGALMDNLDWDE-MMGTICGD 59 (83)
T ss_dssp ETTEEEEEESTTC---HHHHHHHHHTTTCTT-CCEEEECS
T ss_pred cCCEEEEEeCCCc---HHHHHHHHHhCCCCC-eEEEEecC
Confidence 7999999987654 677888888888776 89999885
No 60
>1xxa_A ARGR, arginine repressor; complex (DNA binding protein/peptide); HET: ARG; 2.20A {Escherichia coli K12} SCOP: d.74.2.1 PDB: 1xxb_A* 1xxc_A
Probab=34.50 E-value=37 Score=24.89 Aligned_cols=37 Identities=16% Similarity=0.342 Sum_probs=30.5
Q ss_pred cCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCC
Q 011080 183 AGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGK 222 (494)
Q Consensus 183 aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~ 222 (494)
++|-+|+|..|- .+..++.++.+.+.+++++..|-|+
T Consensus 14 ~~n~vVikT~PG---~A~~va~~iD~~~~~~~I~GTIAGD 50 (78)
T 1xxa_A 14 NDAVVVIHTSPG---AAQLIARLLDSLGKAEGILGTIAGD 50 (78)
T ss_dssp CSSCEEEEESTT---THHHHHHHHTTTTTTTTEEEEEECS
T ss_pred cCCEEEEEeCCC---cHHHHHHHHHhcCCCCCeEEEEecC
Confidence 689999998764 4677888888887899999999885
No 61
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=33.49 E-value=89 Score=21.58 Aligned_cols=36 Identities=8% Similarity=0.120 Sum_probs=26.0
Q ss_pred HHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHHHHH
Q 011080 59 TAKLAQKSWAKTPLWKRAELLHKAAAILKEQKAPIA 94 (494)
Q Consensus 59 ~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~ 94 (494)
.++.....|..++.++|..+.....+.-..+..++.
T Consensus 29 i~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~ 64 (67)
T 3fgh_A 29 KLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMK 64 (67)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667789999999998888776666555555443
No 62
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=30.61 E-value=1.2e+02 Score=22.82 Aligned_cols=23 Identities=9% Similarity=0.251 Sum_probs=20.3
Q ss_pred ceeeeEecCCHHHHHHHHhcCCC
Q 011080 393 PVLPVIRINSVEEGIHHCNASNF 415 (494)
Q Consensus 393 Pvl~v~~~~~~~eai~~~n~~~~ 415 (494)
.-+.|+.|+|.+.|.++.|+.+|
T Consensus 53 ~~~viieFps~~aa~a~y~SpeY 75 (94)
T 3lo3_A 53 KAQVILEFPSREDAYNWYHSEEY 75 (94)
T ss_dssp SEEEEEEESSHHHHHHHHHSHHH
T ss_pred CeEEEEECCCHHHHHHHHCCHHH
Confidence 57899999999999999998655
No 63
>3v4g_A Arginine repressor; vibrio vulnificus CMCP6, virulence, type secretion system, center for structural genomics of infecti diseases, csgid; 1.60A {Vibrio vulnificus} PDB: 1aoy_A
Probab=30.07 E-value=36 Score=29.46 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=32.6
Q ss_pred hhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCC
Q 011080 181 LIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGK 222 (494)
Q Consensus 181 L~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~ 222 (494)
-.++|-+|+|..|-. +..++.++...++|++++..|-|+
T Consensus 114 ~~~~nlvVIkT~PG~---A~~vA~~ID~~~~~e~IlGTIAGD 152 (180)
T 3v4g_A 114 DHNQALVVIHTGPGA---AQLIARMLDSLGKSEGILGVVAGD 152 (180)
T ss_dssp EECSSCEEEEESTTC---HHHHHHHHHHHCGGGTEEEEEECS
T ss_pred eecCCEEEEEeCCCc---HHHHHHHHHhCCCCCCeEEEEecC
Confidence 347999999987754 677888888889999999999885
No 64
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=26.20 E-value=76 Score=26.07 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=40.3
Q ss_pred HHHHHHcCCCCCcEEEecCC-c----hhhHhhhhhCCCccEEEEeccH------HHHHHHHHc--CCCceEEec
Q 011080 203 VHCFHLAGFPKGLISCVTGK-G----SEIGDFLTMHPSINCISFTGGD------TGISISKKA--GMIPLQMEL 263 (494)
Q Consensus 203 ~~~l~~aGlP~g~i~~v~g~-~----~~~~~~L~~~~~v~~v~ftGs~------~~~~v~~~a--~~~~~~le~ 263 (494)
++.|.+.|+|-..++-++.. . +.+.+.+. +-.|++|++|-+. .+..+.+.+ ...|++..+
T Consensus 60 a~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~-~g~i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~T~~ 132 (143)
T 2yvq_A 60 SDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIR-DGSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLLTNF 132 (143)
T ss_dssp HHHHHHTTCCCEEECCGGGC-----CBCHHHHHH-TTSCCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEECSH
T ss_pred HHHHHHcCCeEEEEEeccCCCcccccccHHHHHH-CCCceEEEECCCCCCcCCccHHHHHHHHHHhCCCeEcCH
Confidence 34567899999888877653 2 45666555 4579999997652 455666665 467776654
No 65
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.94 E-value=1.2e+02 Score=22.09 Aligned_cols=37 Identities=14% Similarity=0.104 Sum_probs=26.3
Q ss_pred HHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHHHHH
Q 011080 58 ETAKLAQKSWAKTPLWKRAELLHKAAAILKEQKAPIA 94 (494)
Q Consensus 58 ~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~ 94 (494)
+.++...+.|..++.++|..+.......-..+..++.
T Consensus 47 eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~ 83 (86)
T 2eqz_A 47 EFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMK 83 (86)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566789999999998888777666665555443
No 66
>1s7i_A Hypothetical protein PA1349; structural genomics, protein structure initiative, pseudomon aeruginosa, MCSG, PSI; 1.80A {Pseudomonas aeruginosa} SCOP: d.58.4.9
Probab=24.53 E-value=2.6e+02 Score=22.13 Aligned_cols=70 Identities=7% Similarity=0.052 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHcCCEEeecc-c--CCCcee-----ecEEEeeCCCCCCCcccccccceeeeEecCCHHHHHHHHhcC
Q 011080 342 SANFIEGLVMDAKQKAATFCQEY-K--REGNLI-----WPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNAS 413 (494)
Q Consensus 342 ~~~~~~~~i~~a~~~Ga~v~~~~-~--~~g~~~-----~Ptvl~~~~~~~~~~~~E~fgPvl~v~~~~~~~eai~~~n~~ 413 (494)
..+....++++..+.|.-+.+.+ . ..+..+ .|+|.++.=.+ ..|..|- +.|+.++|.|||++++...
T Consensus 31 ~~~~~~~~~~~l~~~G~lv~g~~L~~~~~a~~Vr~~~g~~~VtdGPfaE----tkE~lgG-~~iie~~s~deA~e~A~~~ 105 (124)
T 1s7i_A 31 IVDECMTYSDQLGKAGHYIASHALQSVQTATTLRHQGGRLAMTDGPFAE----TKEQLGG-FYLIEARDLNQALQIAAKI 105 (124)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEECCCGGGCEEEEECSSCEEEEESCSSC----CSSEEEE-EEEEEESSHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCEEEecCcCCCCcceEEEEecCCceeEecCCCcC----Cccccee-EEEEEeCCHHHHHHHHHhC
Confidence 34555667777777775543221 1 112222 23444332111 3465653 5677899999999999887
Q ss_pred CCC
Q 011080 414 NFG 416 (494)
Q Consensus 414 ~~g 416 (494)
++.
T Consensus 106 P~~ 108 (124)
T 1s7i_A 106 PPG 108 (124)
T ss_dssp GGG
T ss_pred Ccc
Confidence 653
No 67
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=23.81 E-value=84 Score=26.15 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=30.0
Q ss_pred cCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCC
Q 011080 183 AGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGK 222 (494)
Q Consensus 183 aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~ 222 (494)
++|-+|+|..|-. +..++.++...++|+ ++..|-|+
T Consensus 90 ~~n~vVikT~PG~---A~~va~~iD~~~~~e-IlGTIAGD 125 (149)
T 1b4a_A 90 TGNLLVLRTLPGN---AHAIGVLLDNLDWDE-IVGTICGD 125 (149)
T ss_dssp ETTEEEEEESTTC---HHHHHHHHHHHTCTT-EEEEEECS
T ss_pred cCCEEEEEeCCCc---HHHHHHHHHhCCCCC-eEEEEecC
Confidence 7999999988654 677888898888876 89999885
No 68
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=22.66 E-value=98 Score=26.27 Aligned_cols=49 Identities=18% Similarity=0.045 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhh---hCCCccEEEEecc
Q 011080 196 AVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLT---MHPSINCISFTGG 244 (494)
Q Consensus 196 ~~t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~---~~~~v~~v~ftGs 244 (494)
-..+.+|++.|.+.|+.--...+++.+...+..++. .....|.|+.||+
T Consensus 39 D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG 90 (178)
T 3iwt_A 39 DESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred cchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCC
Confidence 346678999999999876656666554344444443 2456799999998
No 69
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=22.53 E-value=1.6e+02 Score=22.44 Aligned_cols=38 Identities=8% Similarity=0.071 Sum_probs=29.3
Q ss_pred HHHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHHHHHHH
Q 011080 59 TAKLAQKSWAKTPLWKRAELLHKAAAILKEQKAPIAEC 96 (494)
Q Consensus 59 ~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~ 96 (494)
.++...+.|..++..++..+.......-..+..++..-
T Consensus 37 isK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y 74 (101)
T 1v63_A 37 RMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLW 74 (101)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788999999999888877777666666666654
No 70
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=22.26 E-value=93 Score=26.23 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCCCCCcEEEecCCchhhHhhhhhC--CCccEEEEecc
Q 011080 198 AALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMH--PSINCISFTGG 244 (494)
Q Consensus 198 t~~~l~~~l~~aGlP~g~i~~v~g~~~~~~~~L~~~--~~v~~v~ftGs 244 (494)
.+..|.+.+.+.|+..-...+++.+ .++.++|.+. ...|.|+.||+
T Consensus 28 n~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG 75 (164)
T 3pzy_A 28 CGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGG 75 (164)
T ss_dssp HHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESC
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCC
Confidence 4567888899999877777788776 6666665442 35799999998
No 71
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=22.24 E-value=34 Score=28.07 Aligned_cols=66 Identities=12% Similarity=0.134 Sum_probs=41.1
Q ss_pred hHHHHHhhHHHHhhcCCEEEEcCCCCChHHHHHHHHHHHH-cCCCCCcEEEec-CCchhhHhhhhhCCCccEEEEecc
Q 011080 169 PVNLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHL-AGFPKGLISCVT-GKGSEIGDFLTMHPSINCISFTGG 244 (494)
Q Consensus 169 P~~~~~~~~~~aL~aGN~vvlkps~~~~~t~~~l~~~l~~-aGlP~g~i~~v~-g~~~~~~~~L~~~~~v~~v~ftGs 244 (494)
+-...+.+-...++.|..++- +.-|+ +.|.+ .|++-..++-++ +.+.++++.+. +-.|++|+||-.
T Consensus 16 ~~~v~~a~~~~~ll~Gf~l~A-----T~gTa----~~L~e~~Gl~v~~v~k~~~eG~p~I~d~I~-~geIdlVInt~~ 83 (134)
T 2xw6_A 16 EEMVAFCQRHREVLARFPLVA-----TGTTG----RRIEEATGLTVEKLLSGPLGGDQQMGARVA-EGRILAVIFFRD 83 (134)
T ss_dssp HHHHHHHHHTHHHHTTSCEEE-----CHHHH----HHHHHHHCCCCEECSCGGGTHHHHHHHHHH-TTCEEEEEEECC
T ss_pred HHHHHHHHHHHHHhCCCEEEE-----ccHHH----HHHHHhhCceEEEEEecCCCCcchHHHHHH-CCCccEEEEccC
Confidence 334444444555666776553 33444 44555 799988877666 53456666555 458999999864
No 72
>3lap_A Arginine repressor; arginine repressor, DNA binding, DNA-canavanine ternary complex; HET: GGB; 2.15A {Mycobacterium tuberculosis} PDB: 3fhz_A* 3ere_D* 3laj_A*
Probab=21.59 E-value=1.2e+02 Score=25.93 Aligned_cols=39 Identities=23% Similarity=0.399 Sum_probs=31.2
Q ss_pred HhhcCCEEEEcCCCCChHHHHHHHHHHHHcCCCCCcEEEecCC
Q 011080 180 ALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGK 222 (494)
Q Consensus 180 aL~aGN~vvlkps~~~~~t~~~l~~~l~~aGlP~g~i~~v~g~ 222 (494)
.-.+||-+|+|..|-. +..++.++...++| +++..|-||
T Consensus 108 v~~~~nlvVikT~PG~---A~~vA~~iD~~~~~-eIlGTIAGD 146 (170)
T 3lap_A 108 TDDSGNLAVLRTPPGA---AHYLASAIDRAALP-QVVGTIAGD 146 (170)
T ss_dssp EEEETTEEEEECSTTC---HHHHHHHHHHHTCT-TEEEEEECS
T ss_pred EeecCCEEEEEeCCCc---HHHHHHHHHhCCCC-CeEEEEecC
Confidence 3457999999988754 67788888888877 699999885
No 73
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=21.02 E-value=1.3e+02 Score=21.33 Aligned_cols=30 Identities=10% Similarity=0.129 Sum_probs=20.8
Q ss_pred HHHHhHHhcCCCHHHHHHHHHHHHHHHHHc
Q 011080 60 AKLAQKSWAKTPLWKRAELLHKAAAILKEQ 89 (494)
Q Consensus 60 A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~ 89 (494)
++.....|+.++.++|..........-..+
T Consensus 36 sk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y 65 (76)
T 1hry_A 36 SKQLGYQWKMLTEAEKWPFFQEAQKLQAMH 65 (76)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 345567799999999988766655544443
No 74
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.22 E-value=2.1e+02 Score=21.63 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=25.2
Q ss_pred HHHHhHHhcCCCHHHHHHHHHHHHHHHHHcHHHHHH
Q 011080 60 AKLAQKSWAKTPLWKRAELLHKAAAILKEQKAPIAE 95 (494)
Q Consensus 60 A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~ 95 (494)
++.....|..++.++|..+.......-..+..++..
T Consensus 49 sk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~ 84 (102)
T 2co9_A 49 SKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAA 84 (102)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556799999999988877766666555554444
Done!