Query 011081
Match_columns 494
No_of_seqs 599 out of 3316
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 07:54:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011081.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011081hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.9E-59 4.2E-64 486.2 52.1 368 83-493 420-789 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 8.2E-58 1.8E-62 474.1 49.0 370 82-493 383-754 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.3E-57 2.7E-62 469.7 45.1 399 80-489 98-525 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 3.2E-54 6.9E-59 454.8 43.4 392 85-492 168-624 (857)
5 PLN03077 Protein ECB2; Provisi 100.0 3.1E-53 6.8E-58 447.3 46.7 362 79-450 61-451 (857)
6 PLN03081 pentatricopeptide (PP 100.0 5E-52 1.1E-56 428.2 43.7 375 81-494 170-564 (697)
7 TIGR02917 PEP_TPR_lipo putativ 99.9 2.1E-22 4.6E-27 216.7 49.1 299 158-486 601-899 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 1E-21 2.2E-26 211.5 48.3 374 82-489 444-834 (899)
9 PRK11788 tetratricopeptide rep 99.9 1.4E-21 3.1E-26 189.3 36.7 303 167-493 44-353 (389)
10 PRK11788 tetratricopeptide rep 99.9 1.1E-20 2.4E-25 183.1 35.6 302 113-459 43-354 (389)
11 PRK15174 Vi polysaccharide exp 99.9 5.6E-18 1.2E-22 172.5 42.9 334 109-490 46-384 (656)
12 TIGR00990 3a0801s09 mitochondr 99.8 2.6E-16 5.6E-21 160.8 46.5 365 79-488 137-572 (615)
13 PRK15174 Vi polysaccharide exp 99.8 1.2E-16 2.5E-21 162.9 43.6 325 79-452 52-381 (656)
14 PRK11447 cellulose synthase su 99.8 9.1E-16 2E-20 167.0 47.8 392 79-486 279-739 (1157)
15 PRK11447 cellulose synthase su 99.8 2.4E-15 5.3E-20 163.7 47.2 277 81-381 159-524 (1157)
16 KOG4626 O-linked N-acetylgluco 99.8 1.5E-16 3.2E-21 148.8 29.8 264 198-489 220-487 (966)
17 KOG4626 O-linked N-acetylgluco 99.8 8.1E-17 1.8E-21 150.4 27.8 336 103-489 114-453 (966)
18 PRK10049 pgaA outer membrane p 99.8 1.3E-14 2.8E-19 151.1 47.4 222 264-490 213-459 (765)
19 TIGR00990 3a0801s09 mitochondr 99.8 6.1E-15 1.3E-19 150.7 44.0 352 108-490 130-540 (615)
20 KOG4422 Uncharacterized conser 99.8 6.1E-15 1.3E-19 132.3 31.7 349 102-489 204-592 (625)
21 PRK14574 hmsH outer membrane p 99.7 8.7E-13 1.9E-17 135.3 45.6 198 289-490 299-516 (822)
22 PRK10049 pgaA outer membrane p 99.7 7.2E-13 1.6E-17 138.2 45.2 377 66-490 10-425 (765)
23 KOG4422 Uncharacterized conser 99.7 1.5E-13 3.3E-18 123.4 28.9 321 160-489 118-464 (625)
24 PRK14574 hmsH outer membrane p 99.6 1.7E-11 3.6E-16 126.0 42.1 190 73-308 38-229 (822)
25 COG2956 Predicted N-acetylgluc 99.6 4.1E-12 8.9E-17 110.5 31.4 293 177-490 51-350 (389)
26 TIGR00540 hemY_coli hemY prote 99.6 4.5E-12 9.8E-17 122.7 34.9 292 170-486 96-398 (409)
27 PRK09782 bacteriophage N4 rece 99.6 2.1E-11 4.5E-16 127.9 41.5 352 104-489 375-742 (987)
28 PRK09782 bacteriophage N4 rece 99.6 7.8E-11 1.7E-15 123.6 44.3 232 246-488 476-707 (987)
29 PF13429 TPR_15: Tetratricopep 99.6 7.9E-15 1.7E-19 134.9 12.8 263 201-486 13-276 (280)
30 PRK10747 putative protoheme IX 99.6 3.7E-11 8.1E-16 115.7 38.4 285 171-487 97-390 (398)
31 PRK10747 putative protoheme IX 99.6 1.7E-11 3.6E-16 118.1 34.6 285 118-451 97-389 (398)
32 COG2956 Predicted N-acetylgluc 99.6 4.2E-11 9.2E-16 104.3 32.5 307 67-451 33-346 (389)
33 PF13429 TPR_15: Tetratricopep 99.6 3E-14 6.4E-19 131.0 13.6 262 163-451 13-276 (280)
34 KOG1126 DNA-binding cell divis 99.6 2E-12 4.4E-17 122.9 24.2 290 177-493 335-626 (638)
35 TIGR00540 hemY_coli hemY prote 99.5 4.1E-11 8.9E-16 116.0 33.7 300 107-451 84-398 (409)
36 KOG2076 RNA polymerase III tra 99.5 3E-10 6.4E-15 111.9 35.8 331 112-485 146-510 (895)
37 KOG1155 Anaphase-promoting com 99.5 4.7E-11 1E-15 108.9 27.9 259 164-451 233-494 (559)
38 KOG2076 RNA polymerase III tra 99.5 5.8E-10 1.3E-14 109.9 37.3 369 80-488 150-556 (895)
39 COG3071 HemY Uncharacterized e 99.5 8.1E-10 1.7E-14 99.4 34.0 291 171-491 97-394 (400)
40 PRK12370 invasion protein regu 99.5 1.6E-10 3.4E-15 116.4 31.9 269 157-452 255-535 (553)
41 KOG1126 DNA-binding cell divis 99.5 7.3E-11 1.6E-15 112.5 26.9 261 158-452 353-620 (638)
42 KOG1155 Anaphase-promoting com 99.5 3.8E-10 8.3E-15 103.0 29.3 166 195-380 329-494 (559)
43 KOG0495 HAT repeat protein [RN 99.5 4.2E-09 9E-14 100.3 37.2 238 246-490 617-883 (913)
44 KOG2002 TPR-containing nuclear 99.5 4.1E-09 8.9E-14 104.8 38.7 322 85-450 146-479 (1018)
45 KOG2003 TPR repeat-containing 99.4 2.3E-10 5E-15 104.0 26.6 207 259-473 502-709 (840)
46 KOG2003 TPR repeat-containing 99.4 2.7E-10 5.9E-15 103.6 26.5 264 204-490 427-692 (840)
47 KOG2002 TPR-containing nuclear 99.4 1.1E-09 2.4E-14 108.7 32.9 385 81-490 354-801 (1018)
48 COG3071 HemY Uncharacterized e 99.4 2.8E-09 6E-14 96.0 32.5 294 110-452 87-390 (400)
49 PRK12370 invasion protein regu 99.4 1.5E-10 3.3E-15 116.4 27.8 266 195-488 255-536 (553)
50 TIGR02521 type_IV_pilW type IV 99.4 3.6E-10 7.9E-15 100.9 27.3 197 285-486 34-231 (234)
51 PF13041 PPR_2: PPR repeat fam 99.4 5.6E-13 1.2E-17 86.5 6.3 50 245-294 1-50 (50)
52 TIGR02521 type_IV_pilW type IV 99.4 6.2E-10 1.3E-14 99.4 27.2 202 245-451 29-231 (234)
53 PF13041 PPR_2: PPR repeat fam 99.4 2.5E-12 5.4E-17 83.4 6.8 50 421-470 1-50 (50)
54 KOG0495 HAT repeat protein [RN 99.3 1.4E-07 3E-12 90.2 39.6 305 158-490 516-849 (913)
55 KOG0547 Translocase of outer m 99.3 7.1E-09 1.5E-13 95.5 30.2 226 254-486 333-565 (606)
56 KOG1915 Cell cycle control pro 99.3 9.6E-08 2.1E-12 87.9 36.0 350 84-486 88-499 (677)
57 KOG4318 Bicoid mRNA stability 99.3 3.9E-09 8.4E-14 103.8 27.9 229 97-331 17-285 (1088)
58 KOG1129 TPR repeat-containing 99.3 8.3E-10 1.8E-14 96.5 19.4 238 246-490 222-461 (478)
59 KOG4318 Bicoid mRNA stability 99.2 5.9E-10 1.3E-14 109.4 18.6 244 183-438 12-286 (1088)
60 KOG1915 Cell cycle control pro 99.2 8.4E-07 1.8E-11 81.9 37.0 372 82-486 154-584 (677)
61 KOG1129 TPR repeat-containing 99.2 3.1E-09 6.7E-14 93.0 20.0 236 196-457 223-461 (478)
62 KOG1840 Kinesin light chain [C 99.2 1.5E-08 3.3E-13 97.7 26.0 240 247-486 199-478 (508)
63 PF12569 NARP1: NMDA receptor- 99.2 2.1E-07 4.6E-12 91.0 33.6 294 111-451 10-333 (517)
64 KOG1173 Anaphase-promoting com 99.2 7E-08 1.5E-12 90.8 28.0 284 159-470 245-534 (611)
65 PF12569 NARP1: NMDA receptor- 99.2 1.5E-07 3.2E-12 92.0 31.4 292 166-487 12-334 (517)
66 KOG1174 Anaphase-promoting com 99.2 1.6E-06 3.5E-11 78.7 34.9 289 177-491 212-504 (564)
67 KOG1173 Anaphase-promoting com 99.1 2.1E-07 4.6E-12 87.7 29.5 287 102-434 241-533 (611)
68 PRK11189 lipoprotein NlpI; Pro 99.1 4.9E-08 1.1E-12 90.1 25.6 95 285-381 67-161 (296)
69 KOG0547 Translocase of outer m 99.1 1.5E-07 3.2E-12 87.1 26.6 316 163-491 120-536 (606)
70 PRK11189 lipoprotein NlpI; Pro 99.1 2E-07 4.4E-12 86.0 28.3 231 210-463 40-275 (296)
71 cd05804 StaR_like StaR_like; a 99.1 1.3E-06 2.8E-11 83.6 34.2 306 159-488 7-337 (355)
72 KOG1840 Kinesin light chain [C 99.1 5.1E-08 1.1E-12 94.1 23.9 240 159-412 200-475 (508)
73 COG3063 PilF Tfp pilus assembl 99.1 4.2E-07 9.1E-12 76.3 24.7 208 248-462 36-244 (250)
74 COG3063 PilF Tfp pilus assembl 99.0 3.3E-07 7.1E-12 76.9 23.8 193 199-411 38-231 (250)
75 KOG1174 Anaphase-promoting com 99.0 1.9E-06 4E-11 78.3 29.5 273 154-457 228-503 (564)
76 KOG2047 mRNA splicing factor [ 99.0 1E-05 2.2E-10 77.8 34.4 146 107-276 104-277 (835)
77 cd05804 StaR_like StaR_like; a 99.0 9.3E-06 2E-10 77.7 35.1 261 167-452 52-336 (355)
78 KOG3785 Uncharacterized conser 98.9 1.3E-05 2.8E-10 71.6 29.7 374 80-493 68-496 (557)
79 KOG2047 mRNA splicing factor [ 98.9 5.4E-05 1.2E-09 72.9 34.8 225 246-476 476-712 (835)
80 KOG1914 mRNA cleavage and poly 98.8 4.6E-05 9.9E-10 72.0 31.7 151 333-487 347-501 (656)
81 PF04733 Coatomer_E: Coatomer 98.8 4.3E-07 9.3E-12 82.7 18.3 228 246-489 34-267 (290)
82 PF12854 PPR_1: PPR repeat 98.8 7.3E-09 1.6E-13 60.2 3.9 32 312-343 2-33 (34)
83 KOG0985 Vesicle coat protein c 98.8 0.00011 2.3E-09 74.4 33.8 319 103-481 982-1335(1666)
84 PF12854 PPR_1: PPR repeat 98.8 1E-08 2.2E-13 59.7 3.8 32 242-273 2-33 (34)
85 KOG1070 rRNA processing protei 98.7 2.6E-06 5.7E-11 88.3 22.8 234 246-484 1457-1697(1710)
86 KOG1156 N-terminal acetyltrans 98.7 0.00018 3.8E-09 69.6 33.3 285 177-489 125-470 (700)
87 PRK04841 transcriptional regul 98.7 0.00011 2.5E-09 79.5 37.1 309 164-488 415-761 (903)
88 KOG1070 rRNA processing protei 98.7 1.2E-05 2.5E-10 83.8 26.3 207 281-491 1457-1667(1710)
89 PLN02789 farnesyltranstransfer 98.7 1.9E-05 4E-10 73.1 25.7 201 177-399 53-267 (320)
90 PLN02789 farnesyltranstransfer 98.7 3.4E-05 7.3E-10 71.4 27.3 233 248-487 38-302 (320)
91 KOG1128 Uncharacterized conser 98.7 1E-05 2.2E-10 78.9 24.4 189 249-450 426-614 (777)
92 KOG3785 Uncharacterized conser 98.7 6.1E-05 1.3E-09 67.4 27.0 55 428-483 398-453 (557)
93 KOG1125 TPR repeat-containing 98.7 4.9E-06 1.1E-10 79.0 21.5 218 169-412 296-523 (579)
94 TIGR03302 OM_YfiO outer membra 98.7 7.6E-06 1.6E-10 73.2 21.6 188 280-489 31-234 (235)
95 KOG4340 Uncharacterized conser 98.7 1.5E-05 3.2E-10 69.5 21.8 313 161-485 13-373 (459)
96 KOG0624 dsRNA-activated protei 98.7 0.00014 2.9E-09 65.0 27.5 193 292-490 165-373 (504)
97 KOG2376 Signal recognition par 98.7 0.00027 5.8E-09 67.7 31.3 99 389-489 378-489 (652)
98 KOG1125 TPR repeat-containing 98.6 8.9E-06 1.9E-10 77.3 21.5 208 156-380 317-526 (579)
99 PF04733 Coatomer_E: Coatomer 98.6 1.3E-06 2.9E-11 79.6 15.7 197 244-452 63-265 (290)
100 PRK14720 transcript cleavage f 98.6 3E-05 6.5E-10 79.9 26.4 170 103-311 29-198 (906)
101 TIGR03302 OM_YfiO outer membra 98.6 9.2E-06 2E-10 72.6 20.6 188 244-452 30-232 (235)
102 KOG0548 Molecular co-chaperone 98.6 0.00016 3.5E-09 68.4 28.8 198 285-489 227-457 (539)
103 KOG4162 Predicted calmodulin-b 98.6 0.00066 1.4E-08 67.1 33.7 356 102-488 320-784 (799)
104 KOG4340 Uncharacterized conser 98.6 0.00011 2.5E-09 64.2 25.3 314 108-451 13-374 (459)
105 KOG1128 Uncharacterized conser 98.5 1.5E-05 3.3E-10 77.8 20.2 208 159-397 425-633 (777)
106 COG5010 TadD Flp pilus assembl 98.5 2.7E-05 5.9E-10 67.0 19.4 160 200-379 70-229 (257)
107 PRK04841 transcriptional regul 98.5 0.0006 1.3E-08 74.0 34.2 307 168-487 384-720 (903)
108 PRK10370 formate-dependent nit 98.5 3.6E-05 7.7E-10 66.2 19.7 127 209-355 52-181 (198)
109 PRK14720 transcript cleavage f 98.5 6E-05 1.3E-09 77.8 24.3 180 253-469 89-268 (906)
110 PRK15179 Vi polysaccharide bio 98.5 0.00011 2.4E-09 75.1 26.0 184 152-364 80-267 (694)
111 PRK10370 formate-dependent nit 98.5 1.3E-05 2.8E-10 69.0 16.3 126 260-389 52-180 (198)
112 KOG0985 Vesicle coat protein c 98.5 0.0011 2.3E-08 67.5 31.0 260 155-477 981-1268(1666)
113 KOG0624 dsRNA-activated protei 98.4 0.0011 2.3E-08 59.5 27.8 308 110-452 43-370 (504)
114 KOG3617 WD40 and TPR repeat-co 98.4 0.00066 1.4E-08 67.5 28.6 332 80-485 739-1107(1416)
115 KOG3616 Selective LIM binding 98.4 6.1E-05 1.3E-09 73.6 21.3 170 254-449 739-908 (1636)
116 COG5010 TadD Flp pilus assembl 98.4 5.1E-05 1.1E-09 65.4 18.5 157 166-345 74-230 (257)
117 KOG1156 N-terminal acetyltrans 98.4 0.0024 5.3E-08 62.1 35.4 363 82-482 54-494 (700)
118 PRK15359 type III secretion sy 98.4 3.9E-05 8.4E-10 62.4 16.5 95 250-346 27-121 (144)
119 COG4783 Putative Zn-dependent 98.4 0.001 2.3E-08 62.5 27.1 191 244-461 271-462 (484)
120 PRK15179 Vi polysaccharide bio 98.4 0.00018 3.9E-09 73.5 24.2 147 192-358 82-228 (694)
121 PRK15359 type III secretion sy 98.3 2.8E-05 6.1E-10 63.2 14.5 109 182-312 14-122 (144)
122 TIGR02552 LcrH_SycD type III s 98.3 4.1E-05 8.8E-10 61.7 15.3 98 247-346 17-114 (135)
123 KOG3081 Vesicle coat complex C 98.3 0.00038 8.3E-09 60.1 21.1 145 254-409 115-263 (299)
124 KOG3617 WD40 and TPR repeat-co 98.3 0.00032 6.9E-09 69.7 22.9 164 206-412 810-992 (1416)
125 KOG1914 mRNA cleavage and poly 98.3 0.0037 8E-08 59.6 28.9 121 368-492 347-469 (656)
126 KOG2376 Signal recognition par 98.3 0.0044 9.5E-08 59.7 34.0 369 83-483 93-516 (652)
127 TIGR02552 LcrH_SycD type III s 98.3 5.1E-05 1.1E-09 61.1 15.1 99 282-382 17-115 (135)
128 TIGR00756 PPR pentatricopeptid 98.2 1.7E-06 3.7E-11 51.0 4.1 33 249-281 2-34 (35)
129 TIGR00756 PPR pentatricopeptid 98.2 2.2E-06 4.8E-11 50.5 4.2 33 319-351 2-34 (35)
130 KOG3060 Uncharacterized conser 98.2 0.0013 2.8E-08 56.5 22.0 187 261-452 26-220 (289)
131 KOG3616 Selective LIM binding 98.2 0.004 8.6E-08 61.5 27.5 109 354-483 767-875 (1636)
132 COG4783 Putative Zn-dependent 98.2 0.002 4.2E-08 60.8 24.5 144 251-416 310-454 (484)
133 KOG4162 Predicted calmodulin-b 98.2 0.0019 4.2E-08 64.0 25.5 286 157-452 477-783 (799)
134 PF13812 PPR_3: Pentatricopept 98.2 2.9E-06 6.3E-11 49.6 3.9 33 248-280 2-34 (34)
135 KOG3081 Vesicle coat complex C 98.2 0.00035 7.6E-09 60.4 17.7 172 183-381 95-271 (299)
136 PF13812 PPR_3: Pentatricopept 98.1 4.2E-06 9.2E-11 48.9 4.1 29 320-348 4-32 (34)
137 KOG3060 Uncharacterized conser 98.1 0.0031 6.6E-08 54.3 21.1 189 295-489 25-222 (289)
138 PF09976 TPR_21: Tetratricopep 98.0 0.00052 1.1E-08 55.9 15.7 127 248-378 13-144 (145)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00033 7.1E-09 66.3 16.0 127 247-379 169-295 (395)
140 PF10037 MRP-S27: Mitochondria 98.0 8.3E-05 1.8E-09 70.6 11.9 121 245-365 64-186 (429)
141 KOG1127 TPR repeat-containing 98.0 0.0064 1.4E-07 62.2 25.2 73 143-219 477-549 (1238)
142 KOG2053 Mitochondrial inherita 98.0 0.0065 1.4E-07 61.5 25.0 224 259-489 21-257 (932)
143 PF08579 RPM2: Mitochondrial r 98.0 0.00013 2.8E-09 54.3 10.1 81 249-329 27-116 (120)
144 PF09976 TPR_21: Tetratricopep 98.0 0.00046 1E-08 56.3 14.3 128 199-343 15-144 (145)
145 PF01535 PPR: PPR repeat; Int 97.9 1.2E-05 2.5E-10 45.8 3.5 29 319-347 2-30 (31)
146 PF01535 PPR: PPR repeat; Int 97.9 9E-06 2E-10 46.3 3.0 29 249-277 2-30 (31)
147 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00036 7.8E-09 66.0 15.1 124 199-344 172-295 (395)
148 KOG2053 Mitochondrial inherita 97.9 0.0081 1.8E-07 60.8 24.8 224 207-453 20-256 (932)
149 KOG1127 TPR repeat-containing 97.9 0.0014 3.1E-08 66.7 18.5 182 177-380 474-658 (1238)
150 PF08579 RPM2: Mitochondrial r 97.9 0.00025 5.3E-09 52.8 10.0 78 286-363 29-115 (120)
151 PF10037 MRP-S27: Mitochondria 97.9 0.00041 8.9E-09 66.0 14.1 124 277-400 61-186 (429)
152 cd00189 TPR Tetratricopeptide 97.8 0.00045 9.8E-09 51.0 11.6 55 254-309 7-61 (100)
153 cd00189 TPR Tetratricopeptide 97.8 0.00043 9.3E-09 51.2 11.3 96 284-381 2-97 (100)
154 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00092 2E-08 52.2 13.5 94 251-346 6-105 (119)
155 KOG0548 Molecular co-chaperone 97.8 0.04 8.8E-07 52.8 33.9 349 80-462 13-463 (539)
156 PF05843 Suf: Suppressor of fo 97.8 0.0012 2.5E-08 60.4 15.3 131 319-451 3-135 (280)
157 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0015 3.2E-08 51.1 13.3 99 354-452 4-105 (119)
158 PF05843 Suf: Suppressor of fo 97.7 0.0013 2.8E-08 60.1 14.3 131 248-381 2-136 (280)
159 KOG2041 WD40 repeat protein [G 97.6 0.068 1.5E-06 52.9 25.3 46 426-471 1024-1070(1189)
160 PRK02603 photosystem I assembl 97.6 0.0044 9.5E-08 52.2 15.6 93 246-339 34-128 (172)
161 PF06239 ECSIT: Evolutionarily 97.6 0.0016 3.4E-08 55.0 12.3 105 279-402 44-153 (228)
162 PRK10866 outer membrane biogen 97.6 0.026 5.6E-07 50.3 20.5 185 281-486 31-240 (243)
163 PF14938 SNAP: Soluble NSF att 97.6 0.016 3.5E-07 53.2 19.7 128 250-380 38-183 (282)
164 PF06239 ECSIT: Evolutionarily 97.6 0.0019 4.1E-08 54.5 12.2 105 244-367 44-153 (228)
165 PF12895 Apc3: Anaphase-promot 97.5 0.00021 4.5E-09 52.0 5.7 20 323-342 31-50 (84)
166 CHL00033 ycf3 photosystem I as 97.5 0.0025 5.5E-08 53.4 13.0 94 282-376 35-137 (168)
167 PRK15363 pathogenicity island 97.5 0.012 2.5E-07 47.5 15.8 93 322-416 40-132 (157)
168 PLN03088 SGT1, suppressor of 97.5 0.0031 6.8E-08 59.8 14.9 92 254-347 9-100 (356)
169 PRK10153 DNA-binding transcrip 97.5 0.0064 1.4E-07 60.4 17.3 137 190-345 331-481 (517)
170 PRK15363 pathogenicity island 97.5 0.0038 8.3E-08 50.3 12.7 96 284-381 37-132 (157)
171 PLN03088 SGT1, suppressor of 97.5 0.003 6.6E-08 59.9 14.4 92 203-312 9-100 (356)
172 PF12895 Apc3: Anaphase-promot 97.5 0.00033 7.1E-09 51.0 6.1 81 400-483 2-83 (84)
173 PRK02603 photosystem I assembl 97.5 0.009 2E-07 50.3 15.5 92 281-373 34-127 (172)
174 COG4700 Uncharacterized protei 97.4 0.047 1E-06 44.9 18.3 157 287-450 61-220 (251)
175 PF14938 SNAP: Soluble NSF att 97.4 0.016 3.5E-07 53.2 17.7 158 290-450 43-223 (282)
176 CHL00033 ycf3 photosystem I as 97.4 0.0047 1E-07 51.8 13.1 96 246-342 34-138 (168)
177 KOG0553 TPR repeat-containing 97.4 0.014 2.9E-07 51.9 15.3 102 291-396 90-191 (304)
178 PRK10866 outer membrane biogen 97.4 0.098 2.1E-06 46.6 21.2 184 246-450 31-239 (243)
179 PRK10153 DNA-binding transcrip 97.3 0.021 4.5E-07 56.8 18.3 145 311-461 331-489 (517)
180 KOG1130 Predicted G-alpha GTPa 97.3 0.0042 9.1E-08 57.2 11.8 272 204-488 25-345 (639)
181 PF12688 TPR_5: Tetratrico pep 97.2 0.02 4.4E-07 44.4 13.5 89 254-344 8-102 (120)
182 KOG1538 Uncharacterized conser 97.2 0.14 3.1E-06 50.3 21.4 105 103-222 554-658 (1081)
183 KOG1130 Predicted G-alpha GTPa 97.2 0.0068 1.5E-07 55.9 12.0 270 167-451 26-343 (639)
184 PF14559 TPR_19: Tetratricopep 97.1 0.0014 3E-08 45.3 5.7 52 259-311 3-54 (68)
185 PF12688 TPR_5: Tetratrico pep 97.1 0.037 7.9E-07 43.0 14.0 57 324-380 8-66 (120)
186 PF13414 TPR_11: TPR repeat; P 97.1 0.0028 6E-08 43.9 7.0 67 422-489 2-69 (69)
187 PF14559 TPR_19: Tetratricopep 97.1 0.0023 5.1E-08 44.1 6.6 64 293-359 2-65 (68)
188 PF13432 TPR_16: Tetratricopep 97.1 0.0033 7.2E-08 42.9 7.2 61 429-490 3-63 (65)
189 KOG0550 Molecular chaperone (D 97.1 0.069 1.5E-06 49.6 17.1 248 177-452 65-350 (486)
190 KOG2796 Uncharacterized conser 97.1 0.12 2.7E-06 45.0 17.5 132 198-346 179-315 (366)
191 PF13432 TPR_16: Tetratricopep 97.0 0.004 8.7E-08 42.5 7.2 55 204-275 5-59 (65)
192 COG4700 Uncharacterized protei 97.0 0.07 1.5E-06 44.0 15.0 129 243-373 85-214 (251)
193 PF13414 TPR_11: TPR repeat; P 97.0 0.0037 8.1E-08 43.3 7.1 61 318-379 4-65 (69)
194 PF03704 BTAD: Bacterial trans 97.0 0.013 2.9E-07 47.7 11.2 70 319-389 64-138 (146)
195 PRK10803 tol-pal system protei 97.0 0.021 4.5E-07 51.4 12.9 97 354-452 145-246 (263)
196 KOG0553 TPR repeat-containing 96.9 0.014 3E-07 51.8 11.3 96 168-286 91-186 (304)
197 PF12921 ATP13: Mitochondrial 96.9 0.018 3.9E-07 45.2 10.6 50 383-432 48-97 (126)
198 KOG2796 Uncharacterized conser 96.9 0.18 4E-06 44.0 17.1 144 247-393 177-325 (366)
199 COG4235 Cytochrome c biogenesi 96.9 0.16 3.4E-06 45.5 17.4 102 154-276 152-256 (287)
200 PF03704 BTAD: Bacterial trans 96.9 0.065 1.4E-06 43.6 14.3 71 248-319 63-138 (146)
201 PRK10803 tol-pal system protei 96.8 0.025 5.4E-07 50.9 12.4 61 320-380 183-245 (263)
202 COG4235 Cytochrome c biogenesi 96.8 0.083 1.8E-06 47.2 15.2 99 246-346 155-256 (287)
203 PF04840 Vps16_C: Vps16, C-ter 96.8 0.42 9.1E-06 44.4 23.4 105 251-375 181-285 (319)
204 PF13525 YfiO: Outer membrane 96.8 0.29 6.2E-06 42.4 20.6 60 252-311 10-71 (203)
205 PF12921 ATP13: Mitochondrial 96.8 0.033 7.1E-07 43.7 11.2 99 196-295 2-101 (126)
206 PF04840 Vps16_C: Vps16, C-ter 96.8 0.46 9.9E-06 44.2 29.5 112 317-449 177-288 (319)
207 PF13281 DUF4071: Domain of un 96.7 0.47 1E-05 44.7 20.2 187 264-452 120-334 (374)
208 COG3898 Uncharacterized membra 96.7 0.5 1.1E-05 43.8 25.7 251 208-487 96-392 (531)
209 PF13525 YfiO: Outer membrane 96.7 0.22 4.7E-06 43.1 16.9 181 285-479 8-199 (203)
210 PF13371 TPR_9: Tetratricopept 96.5 0.0098 2.1E-07 41.7 6.3 57 432-489 4-60 (73)
211 PF04184 ST7: ST7 protein; In 96.4 0.43 9.4E-06 45.9 17.8 54 358-411 265-319 (539)
212 PF09205 DUF1955: Domain of un 96.4 0.27 5.8E-06 38.1 13.2 140 328-490 13-152 (161)
213 PF13371 TPR_9: Tetratricopept 96.3 0.03 6.5E-07 39.1 7.7 53 327-380 5-57 (73)
214 PF13281 DUF4071: Domain of un 96.2 1.1 2.4E-05 42.2 21.5 161 252-414 146-332 (374)
215 PF13424 TPR_12: Tetratricopep 96.2 0.015 3.3E-07 41.3 5.8 60 319-378 7-72 (78)
216 KOG0550 Molecular chaperone (D 96.2 1.1 2.4E-05 42.0 22.5 166 245-418 166-352 (486)
217 PF13424 TPR_12: Tetratricopep 96.2 0.023 5.1E-07 40.4 6.6 63 247-309 5-73 (78)
218 PRK15331 chaperone protein Sic 96.1 0.22 4.7E-06 40.6 12.5 88 291-380 46-133 (165)
219 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.24 5.1E-06 47.4 14.1 66 244-311 72-141 (453)
220 KOG1920 IkappaB kinase complex 95.9 1.3 2.8E-05 47.2 19.8 80 288-378 971-1052(1265)
221 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.29 6.3E-06 46.8 13.5 65 157-224 74-140 (453)
222 KOG2280 Vacuolar assembly/sort 95.6 2.9 6.4E-05 42.4 23.4 115 314-448 681-795 (829)
223 COG3118 Thioredoxin domain-con 95.6 1.6 3.5E-05 39.2 16.8 145 204-367 142-287 (304)
224 KOG1941 Acetylcholine receptor 95.6 1.1 2.4E-05 41.2 15.8 202 247-450 43-273 (518)
225 KOG3941 Intermediate in Toll s 95.5 0.12 2.6E-06 45.5 9.3 101 244-344 64-186 (406)
226 PF10300 DUF3808: Protein of u 95.5 2.1 4.5E-05 42.5 19.1 185 177-380 173-375 (468)
227 KOG3941 Intermediate in Toll s 95.5 0.13 2.8E-06 45.3 9.3 44 406-450 142-186 (406)
228 PF13170 DUF4003: Protein of u 95.4 1.8 3.8E-05 39.9 17.0 130 263-394 78-224 (297)
229 KOG1920 IkappaB kinase complex 95.4 4.7 0.0001 43.3 22.2 112 319-449 941-1052(1265)
230 COG5107 RNA14 Pre-mRNA 3'-end 95.3 0.88 1.9E-05 43.1 14.6 128 320-450 400-529 (660)
231 KOG0543 FKBP-type peptidyl-pro 95.3 0.44 9.5E-06 44.5 12.7 94 252-346 213-320 (397)
232 KOG2610 Uncharacterized conser 95.3 2.2 4.8E-05 38.9 16.8 157 259-417 115-277 (491)
233 PF07079 DUF1347: Protein of u 95.3 2.8 6.1E-05 40.0 33.2 114 368-485 396-522 (549)
234 smart00299 CLH Clathrin heavy 95.3 1.2 2.7E-05 35.7 16.4 43 322-365 12-54 (140)
235 COG4105 ComL DNA uptake lipopr 95.3 1.9 4.2E-05 37.9 20.1 61 428-489 172-235 (254)
236 PF09205 DUF1955: Domain of un 95.2 1.1 2.4E-05 34.8 13.3 131 259-411 14-144 (161)
237 PRK15331 chaperone protein Sic 95.2 0.58 1.3E-05 38.2 11.6 94 251-346 41-134 (165)
238 PF13170 DUF4003: Protein of u 95.1 1.3 2.8E-05 40.7 15.1 131 298-431 78-225 (297)
239 COG1729 Uncharacterized protei 95.0 0.53 1.2E-05 41.7 11.6 61 392-452 183-244 (262)
240 KOG2280 Vacuolar assembly/sort 95.0 4.9 0.00011 40.9 27.2 111 352-482 684-794 (829)
241 COG5107 RNA14 Pre-mRNA 3'-end 94.9 3.8 8.2E-05 39.1 30.4 132 353-489 398-533 (660)
242 PF13512 TPR_18: Tetratricopep 94.8 1.4 3.1E-05 35.1 12.6 71 328-398 21-93 (142)
243 KOG4555 TPR repeat-containing 94.8 1.1 2.4E-05 34.8 11.4 91 291-382 52-145 (175)
244 KOG4555 TPR repeat-containing 94.8 1 2.2E-05 34.9 11.2 91 205-312 52-145 (175)
245 smart00299 CLH Clathrin heavy 94.8 1.7 3.7E-05 34.9 15.6 83 288-378 13-95 (140)
246 KOG0543 FKBP-type peptidyl-pro 94.8 0.78 1.7E-05 43.0 12.6 92 289-381 215-320 (397)
247 KOG1538 Uncharacterized conser 94.8 1.6 3.5E-05 43.3 15.1 92 386-489 746-848 (1081)
248 PF07035 Mic1: Colon cancer-as 94.7 2 4.4E-05 35.4 15.8 136 338-488 15-150 (167)
249 COG0457 NrfG FOG: TPR repeat [ 94.6 2.8 6.1E-05 36.3 28.6 225 260-488 36-266 (291)
250 COG3118 Thioredoxin domain-con 94.4 3.6 7.9E-05 37.0 17.7 122 291-416 143-265 (304)
251 PF04053 Coatomer_WDAD: Coatom 94.4 1.5 3.2E-05 42.9 14.5 58 316-382 346-403 (443)
252 PRK11906 transcriptional regul 94.4 3.7 8.1E-05 39.6 16.5 164 283-450 252-434 (458)
253 PF13512 TPR_18: Tetratricopep 94.4 1.5 3.3E-05 34.9 11.9 79 253-331 16-96 (142)
254 PF04053 Coatomer_WDAD: Coatom 94.4 2 4.2E-05 42.1 15.2 23 106-128 296-318 (443)
255 COG1729 Uncharacterized protei 94.3 0.84 1.8E-05 40.5 11.3 100 389-491 144-248 (262)
256 PF10300 DUF3808: Protein of u 94.3 3.9 8.5E-05 40.5 17.4 163 159-344 189-374 (468)
257 PRK11906 transcriptional regul 94.0 4.6 9.9E-05 39.0 16.3 159 197-377 252-432 (458)
258 KOG2114 Vacuolar assembly/sort 93.8 6.9 0.00015 40.4 17.6 176 250-449 337-516 (933)
259 COG3629 DnrI DNA-binding trans 93.8 0.68 1.5E-05 41.7 9.8 72 198-286 155-231 (280)
260 COG3629 DnrI DNA-binding trans 93.7 0.83 1.8E-05 41.1 10.4 60 284-344 155-214 (280)
261 PF13176 TPR_7: Tetratricopept 93.7 0.14 3E-06 29.9 3.7 26 461-486 2-27 (36)
262 PF13428 TPR_14: Tetratricopep 93.3 0.33 7.1E-06 29.9 5.2 24 322-345 6-29 (44)
263 PF08631 SPO22: Meiosis protei 93.2 6.6 0.00014 35.9 25.5 162 207-385 4-190 (278)
264 COG1747 Uncharacterized N-term 93.2 8.9 0.00019 37.4 22.9 60 284-346 68-127 (711)
265 KOG2041 WD40 repeat protein [G 93.1 11 0.00024 38.2 25.3 246 159-450 797-1084(1189)
266 KOG1585 Protein required for f 93.1 5.7 0.00012 34.7 18.0 84 250-343 34-117 (308)
267 PF13428 TPR_14: Tetratricopep 92.9 0.31 6.7E-06 30.0 4.7 31 198-228 3-33 (44)
268 KOG2610 Uncharacterized conser 92.9 7.5 0.00016 35.7 16.4 151 208-378 115-273 (491)
269 KOG1585 Protein required for f 92.8 6.1 0.00013 34.6 16.6 207 198-447 33-251 (308)
270 COG3898 Uncharacterized membra 92.8 8.6 0.00019 36.1 32.5 316 82-457 66-397 (531)
271 KOG1550 Extracellular protein 92.7 8 0.00017 39.4 17.0 182 263-455 228-429 (552)
272 KOG1550 Extracellular protein 92.3 13 0.00028 37.9 17.9 154 257-418 259-427 (552)
273 COG4105 ComL DNA uptake lipopr 92.2 7.7 0.00017 34.3 20.1 185 247-451 35-232 (254)
274 PF13176 TPR_7: Tetratricopept 92.0 0.34 7.4E-06 28.2 3.9 23 320-342 2-24 (36)
275 PF04184 ST7: ST7 protein; In 91.9 13 0.00028 36.2 19.7 57 288-344 265-322 (539)
276 PF10602 RPN7: 26S proteasome 91.4 3.8 8.3E-05 34.4 11.0 61 284-344 38-100 (177)
277 PF08631 SPO22: Meiosis protei 91.4 11 0.00024 34.4 27.3 223 258-485 4-273 (278)
278 PF10602 RPN7: 26S proteasome 91.4 4.2 9.2E-05 34.2 11.2 99 246-344 35-140 (177)
279 PF13431 TPR_17: Tetratricopep 91.3 0.22 4.8E-06 28.6 2.4 22 246-267 12-33 (34)
280 KOG4570 Uncharacterized conser 90.9 4.1 8.8E-05 37.0 10.8 98 280-381 62-164 (418)
281 COG0457 NrfG FOG: TPR repeat [ 90.8 10 0.00022 32.7 29.8 202 247-452 59-265 (291)
282 KOG1941 Acetylcholine receptor 90.3 15 0.00033 34.2 16.4 130 250-379 125-273 (518)
283 PF00515 TPR_1: Tetratricopept 90.3 0.91 2E-05 25.8 4.5 31 459-489 2-32 (34)
284 KOG4570 Uncharacterized conser 90.1 1.3 2.7E-05 40.0 7.1 104 346-452 58-164 (418)
285 PF13929 mRNA_stabil: mRNA sta 89.9 15 0.00032 33.3 16.1 61 419-479 198-259 (292)
286 COG3947 Response regulator con 89.9 11 0.00025 33.8 12.6 58 250-308 282-339 (361)
287 PF07719 TPR_2: Tetratricopept 89.6 1.1 2.5E-05 25.2 4.6 30 460-489 3-32 (34)
288 PF09613 HrpB1_HrpK: Bacterial 89.4 11 0.00023 30.9 11.5 56 354-413 9-70 (160)
289 KOG1464 COP9 signalosome, subu 89.1 16 0.00035 32.5 20.0 212 191-416 21-260 (440)
290 PF07079 DUF1347: Protein of u 88.9 23 0.0005 34.1 33.6 209 246-465 297-532 (549)
291 COG4785 NlpI Lipoprotein NlpI, 88.6 15 0.00033 31.6 17.6 29 283-311 100-128 (297)
292 PF02259 FAT: FAT domain; Int 88.5 23 0.00049 33.5 19.0 66 422-487 145-213 (352)
293 PF07035 Mic1: Colon cancer-as 87.7 15 0.00031 30.5 16.1 32 268-299 15-46 (167)
294 KOG2114 Vacuolar assembly/sort 87.3 41 0.00088 35.2 20.4 174 199-411 337-514 (933)
295 PF13431 TPR_17: Tetratricopep 86.9 0.8 1.7E-05 26.3 2.6 21 316-336 12-32 (34)
296 PF04097 Nic96: Nup93/Nic96; 86.7 42 0.00091 34.7 19.8 44 162-209 115-158 (613)
297 COG3947 Response regulator con 86.1 26 0.00056 31.7 16.3 162 177-343 149-339 (361)
298 PRK09687 putative lyase; Provi 85.8 28 0.00061 31.8 25.8 221 245-489 35-265 (280)
299 PF13374 TPR_10: Tetratricopep 85.7 2.2 4.7E-05 25.4 4.4 27 248-274 3-29 (42)
300 PF11207 DUF2989: Protein of u 85.1 11 0.00023 32.1 9.3 20 386-405 177-196 (203)
301 PF13374 TPR_10: Tetratricopep 84.4 2.9 6.2E-05 24.8 4.5 28 459-486 3-30 (42)
302 cd00923 Cyt_c_Oxidase_Va Cytoc 84.4 8.5 0.00018 28.2 7.2 61 264-325 24-84 (103)
303 PF00515 TPR_1: Tetratricopept 84.3 3.4 7.3E-05 23.3 4.5 27 249-275 3-29 (34)
304 PF11207 DUF2989: Protein of u 84.2 10 0.00023 32.2 8.9 72 264-336 123-197 (203)
305 COG4455 ImpE Protein of avirul 84.1 9.2 0.0002 32.9 8.4 78 161-256 4-81 (273)
306 PF09613 HrpB1_HrpK: Bacterial 83.8 22 0.00049 29.0 13.9 54 256-311 19-73 (160)
307 KOG1586 Protein required for f 83.8 29 0.00063 30.3 14.0 55 331-385 128-187 (288)
308 PF00637 Clathrin: Region in C 83.3 0.31 6.8E-06 39.4 -0.4 82 289-377 14-95 (143)
309 PF13181 TPR_8: Tetratricopept 82.8 3.7 8E-05 23.1 4.3 30 460-489 3-32 (34)
310 TIGR02561 HrpB1_HrpK type III 82.8 23 0.0005 28.5 11.9 51 330-382 23-74 (153)
311 cd00923 Cyt_c_Oxidase_Va Cytoc 82.5 13 0.00028 27.4 7.5 42 370-411 25-66 (103)
312 PF00637 Clathrin: Region in C 82.1 0.49 1.1E-05 38.2 0.4 85 252-343 12-96 (143)
313 PRK15180 Vi polysaccharide bio 81.6 19 0.0004 34.9 10.3 120 327-451 299-419 (831)
314 COG4649 Uncharacterized protei 81.5 29 0.00064 28.8 15.1 134 158-311 59-196 (221)
315 COG4455 ImpE Protein of avirul 81.4 10 0.00023 32.6 7.8 76 250-326 4-81 (273)
316 PF07719 TPR_2: Tetratricopept 81.4 5.1 0.00011 22.4 4.5 27 249-275 3-29 (34)
317 KOG4648 Uncharacterized conser 81.1 4.3 9.4E-05 37.2 5.8 94 359-458 104-198 (536)
318 PF07163 Pex26: Pex26 protein; 81.0 22 0.00048 31.9 10.0 89 252-340 88-181 (309)
319 PF13174 TPR_6: Tetratricopept 81.0 3.1 6.7E-05 23.1 3.5 26 464-489 6-31 (33)
320 PF10579 Rapsyn_N: Rapsyn N-te 80.9 5.7 0.00012 27.9 5.1 47 399-445 18-65 (80)
321 PF02284 COX5A: Cytochrome c o 80.5 21 0.00046 26.5 9.6 60 265-325 28-87 (108)
322 KOG0890 Protein kinase of the 80.5 1.3E+02 0.0029 35.8 23.8 64 423-489 1670-1733(2382)
323 KOG4648 Uncharacterized conser 80.4 11 0.00024 34.7 8.2 54 254-309 104-158 (536)
324 KOG4234 TPR repeat-containing 80.2 22 0.00047 30.3 9.1 89 292-381 105-197 (271)
325 COG4649 Uncharacterized protei 78.5 38 0.00081 28.2 15.6 136 246-382 58-197 (221)
326 KOG4234 TPR repeat-containing 77.6 31 0.00067 29.4 9.3 94 360-459 103-202 (271)
327 COG2909 MalT ATP-dependent tra 77.6 1E+02 0.0022 32.7 24.8 227 170-411 427-683 (894)
328 PHA02875 ankyrin repeat protei 77.0 37 0.0008 33.1 11.8 77 257-341 9-89 (413)
329 PF13181 TPR_8: Tetratricopept 77.0 6.3 0.00014 22.1 3.9 26 319-344 3-28 (34)
330 COG2976 Uncharacterized protei 76.7 46 0.001 28.3 14.3 87 360-452 97-188 (207)
331 TIGR03504 FimV_Cterm FimV C-te 75.8 4.5 9.8E-05 24.8 3.1 22 429-450 5-26 (44)
332 COG5159 RPN6 26S proteasome re 75.6 62 0.0014 29.3 11.1 48 323-370 9-63 (421)
333 KOG0276 Vesicle coat complex C 75.2 46 0.00099 33.5 11.1 28 316-343 665-692 (794)
334 PF02284 COX5A: Cytochrome c o 75.1 32 0.00069 25.7 10.2 42 370-411 28-69 (108)
335 KOG0276 Vesicle coat complex C 74.5 41 0.00088 33.8 10.6 101 257-378 647-747 (794)
336 TIGR02508 type_III_yscG type I 74.3 33 0.00072 25.5 7.8 51 326-382 48-98 (115)
337 PRK09687 putative lyase; Provi 74.2 71 0.0015 29.2 28.5 235 193-469 34-278 (280)
338 PF06552 TOM20_plant: Plant sp 74.1 24 0.00053 29.4 7.8 76 250-327 31-123 (186)
339 PF07721 TPR_4: Tetratricopept 73.1 5.5 0.00012 21.0 2.7 11 327-337 11-21 (26)
340 PF13174 TPR_6: Tetratricopept 73.1 6.5 0.00014 21.7 3.3 25 428-452 5-29 (33)
341 PF07163 Pex26: Pex26 protein; 73.0 53 0.0011 29.7 10.0 90 286-375 87-181 (309)
342 TIGR03504 FimV_Cterm FimV C-te 72.9 9 0.00019 23.5 3.9 23 464-486 5-27 (44)
343 PF13929 mRNA_stabil: mRNA sta 72.9 75 0.0016 28.9 18.0 146 320-468 134-288 (292)
344 KOG2063 Vacuolar assembly/sort 72.6 1.4E+02 0.0031 32.1 16.8 115 250-364 507-638 (877)
345 PF14689 SPOB_a: Sensor_kinase 72.6 9.3 0.0002 25.5 4.3 24 462-485 27-50 (62)
346 KOG3364 Membrane protein invol 72.0 27 0.00058 27.6 7.1 21 431-451 79-99 (149)
347 PRK13342 recombination factor 71.1 1.1E+02 0.0023 30.0 15.4 43 178-222 154-200 (413)
348 KOG4279 Serine/threonine prote 70.6 1.2E+02 0.0027 31.5 13.0 24 466-489 374-397 (1226)
349 TIGR02508 type_III_yscG type I 69.9 43 0.00093 24.9 8.1 85 177-285 21-105 (115)
350 TIGR02561 HrpB1_HrpK type III 69.5 59 0.0013 26.3 12.3 50 259-312 22-74 (153)
351 COG1747 Uncharacterized N-term 69.2 1.2E+02 0.0027 30.0 24.9 164 244-414 63-232 (711)
352 PRK15180 Vi polysaccharide bio 69.2 1.2E+02 0.0026 29.7 12.9 112 181-312 310-421 (831)
353 PF11838 ERAP1_C: ERAP1-like C 69.0 1E+02 0.0022 28.8 18.2 148 333-486 146-303 (324)
354 COG5187 RPN7 26S proteasome re 67.7 68 0.0015 29.1 9.6 98 386-485 114-219 (412)
355 KOG2297 Predicted translation 67.6 1E+02 0.0022 28.3 20.6 19 424-442 322-340 (412)
356 KOG0686 COP9 signalosome, subu 67.4 1.2E+02 0.0026 29.1 15.4 24 285-308 153-176 (466)
357 PF11846 DUF3366: Domain of un 67.4 31 0.00068 29.4 7.7 34 418-451 139-172 (193)
358 PF13762 MNE1: Mitochondrial s 67.0 66 0.0014 25.9 11.0 24 355-378 42-65 (145)
359 PF10579 Rapsyn_N: Rapsyn N-te 66.9 35 0.00077 24.0 6.2 53 430-483 14-68 (80)
360 PF11848 DUF3368: Domain of un 66.9 25 0.00055 22.0 5.2 34 433-466 12-45 (48)
361 COG5159 RPN6 26S proteasome re 66.5 1E+02 0.0022 28.0 17.1 199 253-451 9-234 (421)
362 smart00028 TPR Tetratricopepti 66.2 13 0.00027 19.5 3.6 26 461-486 4-29 (34)
363 PF08424 NRDE-2: NRDE-2, neces 64.8 1.2E+02 0.0027 28.3 17.7 25 430-454 161-185 (321)
364 PF11846 DUF3366: Domain of un 64.8 37 0.0008 29.0 7.7 32 455-486 141-172 (193)
365 PF02259 FAT: FAT domain; Int 64.4 1.3E+02 0.0028 28.3 21.8 51 255-309 6-56 (352)
366 KOG1586 Protein required for f 64.4 1E+02 0.0022 27.2 16.6 19 435-453 166-184 (288)
367 KOG0991 Replication factor C, 64.2 1E+02 0.0022 27.2 13.2 37 421-458 237-273 (333)
368 PF08424 NRDE-2: NRDE-2, neces 63.2 1.3E+02 0.0029 28.1 17.1 136 246-383 18-185 (321)
369 PRK08691 DNA polymerase III su 62.6 1.2E+02 0.0026 31.8 11.6 87 368-457 180-279 (709)
370 PF06552 TOM20_plant: Plant sp 61.7 97 0.0021 26.0 10.8 110 263-383 7-138 (186)
371 KOG3807 Predicted membrane pro 60.8 1.4E+02 0.0031 27.7 13.9 24 358-381 281-304 (556)
372 PF14689 SPOB_a: Sensor_kinase 59.4 35 0.00077 22.7 5.1 22 287-308 28-49 (62)
373 KOG1258 mRNA processing protei 59.2 2.1E+02 0.0045 29.0 25.8 345 104-487 44-395 (577)
374 PF09477 Type_III_YscG: Bacter 58.8 77 0.0017 24.0 9.0 79 262-347 21-99 (116)
375 COG4785 NlpI Lipoprotein NlpI, 58.5 1.3E+02 0.0027 26.3 16.0 65 246-311 98-162 (297)
376 PF14853 Fis1_TPR_C: Fis1 C-te 58.4 32 0.00069 22.1 4.6 35 429-465 7-41 (53)
377 PF11848 DUF3368: Domain of un 58.4 43 0.00092 21.0 5.1 11 302-312 22-32 (48)
378 PF13762 MNE1: Mitochondrial s 57.9 99 0.0021 24.9 13.2 110 244-365 11-128 (145)
379 KOG2396 HAT (Half-A-TPR) repea 57.9 2E+02 0.0044 28.5 21.4 87 392-481 465-553 (568)
380 PRK10941 hypothetical protein; 57.0 1.5E+02 0.0032 27.0 10.2 65 160-228 183-247 (269)
381 KOG4077 Cytochrome c oxidase, 56.9 84 0.0018 24.6 7.1 47 265-311 67-113 (149)
382 PF11838 ERAP1_C: ERAP1-like C 56.5 1.7E+02 0.0037 27.2 15.7 87 172-277 141-231 (324)
383 PRK14951 DNA polymerase III su 55.5 2E+02 0.0044 29.8 12.0 87 368-457 185-284 (618)
384 COG2909 MalT ATP-dependent tra 55.3 2.9E+02 0.0063 29.6 26.2 198 293-490 426-650 (894)
385 PHA02875 ankyrin repeat protei 55.3 2.1E+02 0.0045 27.8 15.5 17 254-270 72-88 (413)
386 PRK14956 DNA polymerase III su 55.0 2E+02 0.0043 28.7 11.4 88 369-458 183-283 (484)
387 KOG1464 COP9 signalosome, subu 54.3 1.7E+02 0.0036 26.4 17.3 202 242-444 21-252 (440)
388 PF09670 Cas_Cas02710: CRISPR- 54.2 2.1E+02 0.0046 27.6 12.3 57 289-346 138-198 (379)
389 PLN03025 replication factor C 53.4 1.7E+02 0.0036 27.4 10.5 89 369-460 161-261 (319)
390 KOG4077 Cytochrome c oxidase, 53.2 71 0.0015 24.9 6.3 52 414-466 75-126 (149)
391 PF11663 Toxin_YhaV: Toxin wit 52.9 13 0.00028 29.2 2.4 21 296-316 109-129 (140)
392 PRK10564 maltose regulon perip 52.8 28 0.00062 31.7 4.9 43 243-285 252-295 (303)
393 PF12862 Apc5: Anaphase-promot 52.5 83 0.0018 23.0 6.7 54 398-451 9-69 (94)
394 PRK14700 recombination factor 52.0 2E+02 0.0042 26.6 15.5 62 288-349 129-198 (300)
395 PF11663 Toxin_YhaV: Toxin wit 51.9 14 0.0003 29.1 2.4 32 435-468 107-138 (140)
396 PRK14963 DNA polymerase III su 51.9 2.7E+02 0.0058 28.1 12.1 43 369-413 178-221 (504)
397 PF09670 Cas_Cas02710: CRISPR- 51.7 2.3E+02 0.005 27.3 11.2 56 255-311 139-198 (379)
398 PRK07003 DNA polymerase III su 51.0 2.4E+02 0.0052 30.1 11.6 86 368-456 180-278 (830)
399 PRK06645 DNA polymerase III su 51.0 2.6E+02 0.0057 28.2 11.8 88 368-458 189-292 (507)
400 PF09477 Type_III_YscG: Bacter 50.9 1.1E+02 0.0023 23.2 9.3 80 296-382 20-99 (116)
401 KOG2659 LisH motif-containing 50.0 1.6E+02 0.0036 25.7 8.8 61 349-411 23-88 (228)
402 KOG4507 Uncharacterized conser 49.9 49 0.0011 33.2 6.2 92 397-490 617-708 (886)
403 KOG3364 Membrane protein invol 49.8 1.2E+02 0.0026 24.1 7.2 64 164-227 38-102 (149)
404 PF10345 Cohesin_load: Cohesin 49.5 3.2E+02 0.007 28.4 30.4 158 170-343 72-251 (608)
405 PF09454 Vps23_core: Vps23 cor 49.3 54 0.0012 22.2 4.7 50 244-294 5-54 (65)
406 PRK10564 maltose regulon perip 49.2 35 0.00076 31.2 4.9 37 278-314 252-289 (303)
407 COG2178 Predicted RNA-binding 48.8 1.7E+02 0.0037 24.9 9.1 77 177-276 19-98 (204)
408 COG5108 RPO41 Mitochondrial DN 48.8 1.3E+02 0.0029 30.8 9.0 77 201-294 33-115 (1117)
409 COG2137 OraA Uncharacterized p 48.7 1.6E+02 0.0035 24.6 12.8 75 372-448 88-163 (174)
410 PF09454 Vps23_core: Vps23 cor 48.7 34 0.00074 23.1 3.7 30 318-347 9-38 (65)
411 PF10366 Vps39_1: Vacuolar sor 48.5 1.2E+02 0.0026 23.0 7.2 26 320-345 42-67 (108)
412 PF01347 Vitellogenin_N: Lipop 48.3 3.4E+02 0.0073 28.2 15.9 50 285-337 349-398 (618)
413 PRK13342 recombination factor 48.2 2.7E+02 0.0059 27.2 17.6 63 321-383 231-301 (413)
414 PF07575 Nucleopor_Nup85: Nup8 47.8 3.3E+02 0.0072 28.0 18.5 33 435-467 507-539 (566)
415 COG0735 Fur Fe2+/Zn2+ uptake r 46.5 1E+02 0.0023 24.8 6.9 48 271-319 10-57 (145)
416 PRK14958 DNA polymerase III su 46.2 3.3E+02 0.0072 27.5 12.0 87 369-458 181-280 (509)
417 smart00638 LPD_N Lipoprotein N 46.1 3.5E+02 0.0076 27.8 22.4 59 282-345 310-368 (574)
418 PF10345 Cohesin_load: Cohesin 45.8 3.7E+02 0.008 28.0 32.6 193 293-486 372-605 (608)
419 COG5108 RPO41 Mitochondrial DN 45.2 2E+02 0.0043 29.6 9.6 87 322-411 33-127 (1117)
420 PF12862 Apc5: Anaphase-promot 45.1 1.2E+02 0.0026 22.1 7.6 20 361-380 50-69 (94)
421 PF14669 Asp_Glu_race_2: Putat 44.5 2E+02 0.0043 24.5 15.6 55 428-482 137-205 (233)
422 PF11817 Foie-gras_1: Foie gra 43.4 1.4E+02 0.0031 26.7 8.0 21 323-343 184-204 (247)
423 KOG0687 26S proteasome regulat 43.3 2.8E+02 0.0061 25.9 16.2 97 317-415 104-209 (393)
424 PF10366 Vps39_1: Vacuolar sor 43.0 1.5E+02 0.0032 22.5 7.6 27 284-310 41-67 (108)
425 KOG2659 LisH motif-containing 42.8 2.3E+02 0.0051 24.8 9.4 101 192-307 22-128 (228)
426 PRK10941 hypothetical protein; 42.6 2.6E+02 0.0057 25.4 11.0 23 358-380 187-209 (269)
427 KOG2582 COP9 signalosome, subu 42.5 3.1E+02 0.0066 26.1 20.0 208 248-488 103-346 (422)
428 PF02847 MA3: MA3 domain; Int 42.3 1.5E+02 0.0032 22.4 7.1 24 251-274 6-29 (113)
429 PRK14960 DNA polymerase III su 41.4 4.2E+02 0.0092 27.8 11.6 87 368-457 179-278 (702)
430 KOG4642 Chaperone-dependent E3 41.0 2.6E+02 0.0057 24.9 10.5 112 177-308 26-143 (284)
431 KOG0037 Ca2+-binding protein, 40.7 2.4E+02 0.0053 24.4 9.5 37 137-173 155-191 (221)
432 COG4976 Predicted methyltransf 40.6 57 0.0012 28.5 4.6 60 433-493 5-64 (287)
433 smart00386 HAT HAT (Half-A-TPR 40.5 60 0.0013 17.3 4.0 29 437-466 1-29 (33)
434 COG0735 Fur Fe2+/Zn2+ uptake r 40.1 1.8E+02 0.0039 23.5 7.4 60 341-401 10-69 (145)
435 KOG4567 GTPase-activating prot 40.1 2.2E+02 0.0047 26.3 8.2 45 180-224 262-306 (370)
436 PRK11639 zinc uptake transcrip 38.7 1.8E+02 0.0039 24.2 7.4 61 378-440 17-77 (169)
437 PF02847 MA3: MA3 domain; Int 38.1 1.7E+02 0.0038 22.0 7.3 60 286-347 6-67 (113)
438 KOG0687 26S proteasome regulat 38.0 3.4E+02 0.0074 25.4 14.3 133 348-484 66-207 (393)
439 cd00280 TRFH Telomeric Repeat 37.8 2.5E+02 0.0055 23.8 8.3 19 432-450 120-138 (200)
440 KOG1114 Tripeptidyl peptidase 37.5 5.8E+02 0.013 27.9 15.0 53 422-474 1230-1283(1304)
441 PF14853 Fis1_TPR_C: Fis1 C-te 37.4 1.1E+02 0.0024 19.6 5.1 24 393-416 7-30 (53)
442 COG2976 Uncharacterized protei 37.4 2.7E+02 0.0058 23.9 17.7 88 255-347 97-189 (207)
443 PF04097 Nic96: Nup93/Nic96; 37.4 5E+02 0.011 27.1 14.9 63 247-311 112-181 (613)
444 smart00777 Mad3_BUB1_I Mad3/BU 37.2 2E+02 0.0044 22.5 7.0 74 403-482 49-123 (125)
445 COG5210 GTPase-activating prot 36.9 4.3E+02 0.0093 26.6 11.1 53 337-389 362-414 (496)
446 PF09986 DUF2225: Uncharacteri 36.7 2.9E+02 0.0062 24.1 10.1 21 467-487 174-194 (214)
447 KOG0686 COP9 signalosome, subu 36.7 4E+02 0.0087 25.8 14.2 161 197-380 151-332 (466)
448 PRK09111 DNA polymerase III su 36.6 5.1E+02 0.011 26.9 11.9 86 368-457 193-292 (598)
449 KOG4507 Uncharacterized conser 36.4 2.3E+02 0.0051 28.7 8.5 73 252-326 647-719 (886)
450 PF09868 DUF2095: Uncharacteri 35.5 1.7E+02 0.0036 22.4 5.7 39 429-468 67-105 (128)
451 PF03745 DUF309: Domain of unk 35.1 1.4E+02 0.003 20.0 5.5 46 259-304 11-61 (62)
452 KOG2396 HAT (Half-A-TPR) repea 35.1 4.7E+02 0.01 26.1 27.6 60 427-487 464-525 (568)
453 PRK09857 putative transposase; 35.1 3.3E+02 0.0071 25.1 9.1 58 328-386 217-274 (292)
454 PF11817 Foie-gras_1: Foie gra 34.9 2.2E+02 0.0048 25.4 7.9 55 429-483 184-243 (247)
455 COG2178 Predicted RNA-binding 34.5 2.9E+02 0.0064 23.6 11.1 18 434-451 132-149 (204)
456 cd00280 TRFH Telomeric Repeat 34.3 2.8E+02 0.006 23.5 7.4 48 333-380 85-139 (200)
457 PF00244 14-3-3: 14-3-3 protei 34.2 3.4E+02 0.0073 24.1 10.7 59 252-310 6-65 (236)
458 PF04190 DUF410: Protein of un 34.1 3.5E+02 0.0077 24.4 17.1 160 293-487 1-170 (260)
459 PRK12402 replication factor C 33.8 3.2E+02 0.007 25.5 9.4 27 464-491 258-285 (337)
460 PF10475 DUF2450: Protein of u 33.8 3.8E+02 0.0083 24.6 13.3 27 385-411 195-221 (291)
461 KOG4567 GTPase-activating prot 33.0 3.2E+02 0.007 25.3 8.2 40 373-412 264-303 (370)
462 PRK06305 DNA polymerase III su 33.0 5E+02 0.011 25.8 11.2 85 368-456 182-280 (451)
463 PRK11639 zinc uptake transcrip 33.0 2.9E+02 0.0062 23.0 7.9 58 345-403 19-76 (169)
464 PF09868 DUF2095: Uncharacteri 33.0 1.8E+02 0.0038 22.2 5.5 24 289-312 68-91 (128)
465 PF10255 Paf67: RNA polymerase 32.9 2.6E+02 0.0057 27.1 8.3 95 386-485 74-191 (404)
466 PF04034 DUF367: Domain of unk 32.6 2.5E+02 0.0053 22.1 6.9 57 425-484 68-125 (127)
467 COG4003 Uncharacterized protei 32.2 1.9E+02 0.004 20.6 5.3 33 429-462 37-69 (98)
468 KOG0989 Replication factor C, 31.6 4.3E+02 0.0094 24.6 10.7 32 378-411 201-232 (346)
469 PRK09857 putative transposase; 31.1 4.3E+02 0.0092 24.4 9.3 66 285-351 209-274 (292)
470 KOG0991 Replication factor C, 30.9 3.8E+02 0.0083 23.8 12.9 38 349-387 236-273 (333)
471 PF08311 Mad3_BUB1_I: Mad3/BUB 30.9 2.6E+02 0.0056 21.9 8.8 43 441-483 81-124 (126)
472 PRK12798 chemotaxis protein; R 30.7 5.1E+02 0.011 25.2 19.1 225 259-492 93-329 (421)
473 KOG0128 RNA-binding protein SA 30.7 6.9E+02 0.015 26.7 29.7 57 435-492 474-531 (881)
474 PF07575 Nucleopor_Nup85: Nup8 30.6 1.7E+02 0.0036 30.1 7.2 61 281-343 404-464 (566)
475 PF09986 DUF2225: Uncharacteri 30.6 3.7E+02 0.0079 23.4 9.9 49 334-382 142-195 (214)
476 PF04762 IKI3: IKI3 family; I 30.5 7.8E+02 0.017 27.2 17.1 210 252-483 699-926 (928)
477 PRK07764 DNA polymerase III su 30.3 3.7E+02 0.0081 29.1 9.7 45 368-414 181-226 (824)
478 PRK09462 fur ferric uptake reg 29.9 2.7E+02 0.0059 22.4 7.0 60 378-439 8-68 (148)
479 KOG2300 Uncharacterized conser 29.9 5.7E+02 0.012 25.5 17.5 198 247-448 323-553 (629)
480 PF10475 DUF2450: Protein of u 29.7 4.5E+02 0.0097 24.2 9.7 113 250-373 101-218 (291)
481 PHA03100 ankyrin repeat protei 29.7 3.4E+02 0.0074 26.9 9.2 6 275-280 56-61 (480)
482 TIGR01503 MthylAspMut_E methyl 29.5 4.4E+02 0.0096 26.0 9.0 148 295-450 67-237 (480)
483 PF11123 DNA_Packaging_2: DNA 29.5 1.9E+02 0.0041 20.1 4.7 31 333-364 13-43 (82)
484 PF12926 MOZART2: Mitotic-spin 29.5 2.2E+02 0.0048 20.6 8.0 63 314-378 7-69 (88)
485 PRK14961 DNA polymerase III su 28.9 5.2E+02 0.011 24.7 11.1 88 367-457 179-279 (363)
486 PRK09462 fur ferric uptake reg 28.8 3.1E+02 0.0067 22.1 7.3 60 343-403 8-68 (148)
487 PRK07994 DNA polymerase III su 28.7 7E+02 0.015 26.2 11.1 85 368-455 180-277 (647)
488 PRK14970 DNA polymerase III su 28.6 5.2E+02 0.011 24.6 10.4 93 369-465 170-275 (367)
489 cd08819 CARD_MDA5_2 Caspase ac 28.5 2.3E+02 0.005 20.5 6.8 69 179-269 20-88 (88)
490 PF15297 CKAP2_C: Cytoskeleton 28.5 5.1E+02 0.011 24.5 8.9 63 298-362 119-185 (353)
491 COG0790 FOG: TPR repeat, SEL1 28.1 4.6E+02 0.01 23.8 25.2 145 260-413 54-217 (292)
492 TIGR02397 dnaX_nterm DNA polym 28.1 5.1E+02 0.011 24.4 11.7 96 368-467 178-286 (355)
493 KOG4521 Nuclear pore complex, 28.0 9.1E+02 0.02 27.2 15.0 149 326-481 929-1125(1480)
494 PF02631 RecX: RecX family; I 27.7 2.8E+02 0.0062 21.3 12.6 10 338-347 13-22 (121)
495 PF06957 COPI_C: Coatomer (COP 27.5 2E+02 0.0044 28.0 6.6 28 426-453 303-330 (422)
496 COG4003 Uncharacterized protei 27.4 2.3E+02 0.005 20.1 5.1 23 325-347 39-61 (98)
497 PRK14953 DNA polymerase III su 27.4 6.2E+02 0.013 25.5 10.2 94 368-466 180-286 (486)
498 cd07153 Fur_like Ferric uptake 27.0 1.8E+02 0.0039 22.1 5.3 43 254-296 7-49 (116)
499 PF15297 CKAP2_C: Cytoskeleton 27.0 5.5E+02 0.012 24.3 9.0 48 246-293 139-186 (353)
500 smart00638 LPD_N Lipoprotein N 26.9 7.1E+02 0.015 25.6 24.5 20 197-216 341-360 (574)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.9e-59 Score=486.19 Aligned_cols=368 Identities=21% Similarity=0.352 Sum_probs=333.7
Q ss_pred cCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHH
Q 011081 83 NNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFD 162 (494)
Q Consensus 83 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (494)
+..+.|+++|..|. .|+..+|+.+|++|++.|+++.|..+|+.|.+.| +.++..+|+
T Consensus 420 g~~~eAl~lf~~M~-----~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G------------------l~pD~~tyn 476 (1060)
T PLN03218 420 RAVKEAFRFAKLIR-----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG------------------LKADCKLYT 476 (1060)
T ss_pred CCHHHHHHHHHHcC-----CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------------------CCCCHHHHH
Confidence 33444555554443 1555555555555555555555555555555433 346788999
Q ss_pred HHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccc
Q 011081 163 LLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVR 242 (494)
Q Consensus 163 ~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (494)
.||.+|++.|+ +++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|
T Consensus 477 sLI~~y~k~G~---vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~----------------~G 537 (1060)
T PLN03218 477 TLISTCAKSGK---VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS----------------KN 537 (1060)
T ss_pred HHHHHHHhCcC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH----------------cC
Confidence 99999999999 999999999999999999999999999999999999999999999965 45
Q ss_pred cccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH--cCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHH
Q 011081 243 VRPNVHTFNALMVGFYREGAFEKVEDVWVEMAR--LGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAY 320 (494)
Q Consensus 243 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 320 (494)
+.||..+||.||.+|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|
T Consensus 538 v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ty 617 (1060)
T PLN03218 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY 617 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHH
Confidence 789999999999999999999999999999986 678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 011081 321 NTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDK 400 (494)
Q Consensus 321 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 400 (494)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|++++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.
T Consensus 618 nsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~ 697 (1060)
T PLN03218 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697 (1060)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011081 401 RRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATML 480 (494)
Q Consensus 401 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 480 (494)
|++++|.++|+ .|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++
T Consensus 698 G~~eeA~~lf~-eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l 776 (1060)
T PLN03218 698 KNWKKALELYE-DIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776 (1060)
T ss_pred CCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999998 67778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccccccC
Q 011081 481 RKEMFENQVRQED 493 (494)
Q Consensus 481 ~~~m~~~~~~pd~ 493 (494)
+++|.+.|+.||.
T Consensus 777 ~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 777 LSQAKEDGIKPNL 789 (1060)
T ss_pred HHHHHHcCCCCCH
Confidence 9999999999873
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.2e-58 Score=474.05 Aligned_cols=370 Identities=19% Similarity=0.307 Sum_probs=350.1
Q ss_pred ccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhH
Q 011081 82 KNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVF 161 (494)
Q Consensus 82 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (494)
.++++.|+++|++|...+.+.++..+++.++.+|.+.|.+++|..+++.|. .++..+|
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----------------------~pd~~Ty 440 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----------------------NPTLSTF 440 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----------------------CCCHHHH
Confidence 467788888888887766667788888888888888888888888877663 1678899
Q ss_pred HHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccccc
Q 011081 162 DLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVV 241 (494)
Q Consensus 162 ~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (494)
+.+|.+|++.|+ +++|.++|+.|.+.|+.||..+|++||.+|++.|+++.|.++|++|.+ .
T Consensus 441 n~LL~a~~k~g~---~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~----------------~ 501 (1060)
T PLN03218 441 NMLMSVCASSQD---IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN----------------A 501 (1060)
T ss_pred HHHHHHHHhCcC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH----------------c
Confidence 999999999999 999999999999999999999999999999999999999999999965 4
Q ss_pred ccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHhH
Q 011081 242 RVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRD--KNVEHDVVA 319 (494)
Q Consensus 242 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~~~~~~ 319 (494)
|+.||..+|+.||.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+
T Consensus 502 Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vT 581 (1060)
T PLN03218 502 GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHIT 581 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 568999999999999999999999999999999999999999999999999999999999999999976 678999999
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 011081 320 YNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCD 399 (494)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 399 (494)
|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++
T Consensus 582 ynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k 661 (1060)
T PLN03218 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH 661 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011081 400 KRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATM 479 (494)
Q Consensus 400 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 479 (494)
.|++++|.++++ .|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.+
T Consensus 662 ~G~~eeA~~l~~-eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAle 740 (1060)
T PLN03218 662 AGDLDKAFEILQ-DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE 740 (1060)
T ss_pred CCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999 6778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccccccC
Q 011081 480 LRKEMFENQVRQED 493 (494)
Q Consensus 480 ~~~~m~~~~~~pd~ 493 (494)
+|++|.+.|+.||.
T Consensus 741 lf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 741 VLSEMKRLGLCPNT 754 (1060)
T ss_pred HHHHHHHcCCCCCH
Confidence 99999999999973
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.3e-57 Score=469.71 Aligned_cols=399 Identities=16% Similarity=0.258 Sum_probs=342.0
Q ss_pred hhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcC----
Q 011081 80 GLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECG---- 155 (494)
Q Consensus 80 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 155 (494)
...++++.|+++|.||....++.||..+|+.++.+|++.++++.|.+++..|.+.| ..++..+++.++.+|.++|
T Consensus 98 ~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~Li~~y~k~g~~~~ 176 (697)
T PLN03081 98 VACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNRVLLMHVKCGMLID 176 (697)
T ss_pred HcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHhcCCCHHH
Confidence 44578999999999998777788999999999999999999999999999999987 6788999999999999987
Q ss_pred ----------CChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcC
Q 011081 156 ----------SAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGL 225 (494)
Q Consensus 156 ----------~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 225 (494)
++..+|+.+|.+|++.|+ +++|+++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+.+.
T Consensus 177 A~~lf~~m~~~~~~t~n~li~~~~~~g~---~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~ 253 (697)
T PLN03081 177 ARRLFDEMPERNLASWGTIIGGLVDAGN---YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKT 253 (697)
T ss_pred HHHHHhcCCCCCeeeHHHHHHHHHHCcC---HHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 367899999999999999 9999999999988887777666655554444444444444444444332
Q ss_pred Ccccc-------------cccccccccccc--cccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHH
Q 011081 226 DSDAT-------------AGIGKDVKRVVR--VRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMA 290 (494)
Q Consensus 226 ~~~~~-------------~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 290 (494)
+.... .|..+++.+.+. ..+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 254 g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~ 333 (697)
T PLN03081 254 GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333 (697)
T ss_pred CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 21100 011111222211 356999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011081 291 VFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDS 370 (494)
Q Consensus 291 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 370 (494)
+|++.|++++|.++++.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||..+||+||.+|++.|+.++
T Consensus 334 a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~ 409 (697)
T PLN03081 334 IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTK 409 (697)
T ss_pred HHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999999999996 5789999999999999999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 371 AILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMV 450 (494)
Q Consensus 371 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (494)
|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.+.++.|+.|+..+|++++++|++.|++++|.+++++|
T Consensus 410 A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~- 488 (697)
T PLN03081 410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA- 488 (697)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-
Confidence 9999999999999999999999999999999999999999976677899999999999999999999999999999887
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 451 GKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 451 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
++.|+..+|++|+.+|..+|+++.|.++++++.+.++
T Consensus 489 --~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p 525 (697)
T PLN03081 489 --PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP 525 (697)
T ss_pred --CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence 6788888888888888777777777776666655443
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.2e-54 Score=454.81 Aligned_cols=392 Identities=15% Similarity=0.195 Sum_probs=284.8
Q ss_pred chhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCC--------
Q 011081 85 PHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGS-------- 156 (494)
Q Consensus 85 ~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------- 156 (494)
++.|+++|..|... |+.||..+|+.+|++|++.++++.+.+++..+.+.| ..++..++++++.+|.++|.
T Consensus 168 ~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf 245 (857)
T PLN03077 168 FDEALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG-FELDVDVVNALITMYVKCGDVVSARLVF 245 (857)
T ss_pred HHHHHHHHHHHHHc-CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC-CCcccchHhHHHHHHhcCCCHHHHHHHH
Confidence 33444444444321 334444444444444444444444444444444433 44566778888888888773
Q ss_pred ------ChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccc
Q 011081 157 ------APFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDAT 230 (494)
Q Consensus 157 ------~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 230 (494)
+..+||++|.+|++.|+ .++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.|.+++..+.+.+....
T Consensus 246 ~~m~~~d~~s~n~li~~~~~~g~---~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d 322 (857)
T PLN03077 246 DRMPRRDCISWNAMISGYFENGE---CLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322 (857)
T ss_pred hcCCCCCcchhHHHHHHHHhCCC---HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccc
Confidence 66889999999999999 999999999999999999999999999999988888888888888876543211
Q ss_pred -------------cccccccccccc--cccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhc
Q 011081 231 -------------AGIGKDVKRVVR--VRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEE 295 (494)
Q Consensus 231 -------------~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 295 (494)
.+..+++.+.+. ..||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.
T Consensus 323 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~ 402 (857)
T PLN03077 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402 (857)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc
Confidence 122223444332 36789999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011081 296 RRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVY 375 (494)
Q Consensus 296 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 375 (494)
|+++.|.++++.|.+.|+.|+..+||+||.+|+++|++++|.++|++|. .+|..+|+.+|.+|++.|+.++|+.+|
T Consensus 403 g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf 478 (857)
T PLN03077 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFF 478 (857)
T ss_pred chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999988888888886 345566666666666666666666666
Q ss_pred HHHHHCCCCCChhhHHHH-----------------------------------HHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 011081 376 NDMCRKGFEPEGSTIEVL-----------------------------------IGELCDKRRVFEALDILKARVVKFGLF 420 (494)
Q Consensus 376 ~~m~~~~~~p~~~~~~~l-----------------------------------i~~~~~~~~~~~a~~~~~~~~~~~~~~ 420 (494)
++|.. ++.||..||+.+ +.+|++.|++++|.++|++ + .
T Consensus 479 ~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~-~-----~ 551 (857)
T PLN03077 479 RQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS-H-----E 551 (857)
T ss_pred HHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHh-c-----C
Confidence 66653 345555544444 3444455555555555542 1 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-Hcccccc
Q 011081 421 PTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMF-ENQVRQE 492 (494)
Q Consensus 421 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~pd 492 (494)
||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|. +.|+.|+
T Consensus 552 ~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 66777777777777777777777777777777777777777777777777777777777777777 5566665
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.1e-53 Score=447.27 Aligned_cols=362 Identities=16% Similarity=0.235 Sum_probs=288.0
Q ss_pred HhhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcC---
Q 011081 79 LGLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECG--- 155 (494)
Q Consensus 79 ~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 155 (494)
++..+.++.|+.+|..+.. .+++|+..+|..++.+|.+.+.++.|..++..+.+.+ ..++..++++++.+|.++|
T Consensus 61 l~~~g~~~~A~~l~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~n~li~~~~~~g~~~ 138 (857)
T PLN03077 61 LCSHGQLEQALKLLESMQE-LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSH-PSLGVRLGNAMLSMFVRFGELV 138 (857)
T ss_pred HHhCCCHHHHHHHHHHHHh-cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHhCCChH
Confidence 4455678889999988864 4568888889999999988888999999998888776 4577788889998888877
Q ss_pred -----------CChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhc
Q 011081 156 -----------SAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFG 224 (494)
Q Consensus 156 -----------~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 224 (494)
++..+|+.+|.+|++.|+ +++|+++|++|.+.|+.||..||+.++++|++.++++.+.+++..+..
T Consensus 139 ~A~~~f~~m~~~d~~~~n~li~~~~~~g~---~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 215 (857)
T PLN03077 139 HAWYVFGKMPERDLFSWNVLVGGYAKAGY---FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR 215 (857)
T ss_pred HHHHHHhcCCCCCeeEHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH
Confidence 366788999999999998 999999999998888888888887777776666666666666666654
Q ss_pred CCcccc-------------cccccccccccc--cccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHH
Q 011081 225 LDSDAT-------------AGIGKDVKRVVR--VRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLM 289 (494)
Q Consensus 225 ~~~~~~-------------~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 289 (494)
.+.... .+....+.+.+. ..||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++
T Consensus 216 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll 295 (857)
T PLN03077 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI 295 (857)
T ss_pred cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH
Confidence 332211 111122333322 35788999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 011081 290 AVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVD 369 (494)
Q Consensus 290 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 369 (494)
.+|++.|+++.|.+++..|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+++
T Consensus 296 ~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~ 371 (857)
T PLN03077 296 SACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPD 371 (857)
T ss_pred HHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHH
Confidence 9999999999999999999888888888888888888888888888888888885 567788888888888888888
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 370 SAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEM 449 (494)
Q Consensus 370 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (494)
+|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++. .+.+.|+.|+..+|+.||++|++.|++++|.++|++|
T Consensus 372 ~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~-~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m 450 (857)
T PLN03077 372 KALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE-LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450 (857)
T ss_pred HHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHH-HHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 888888888888888888888888888888888888888877 5666677777777777777777777777777777666
Q ss_pred H
Q 011081 450 V 450 (494)
Q Consensus 450 ~ 450 (494)
.
T Consensus 451 ~ 451 (857)
T PLN03077 451 P 451 (857)
T ss_pred C
Confidence 4
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5e-52 Score=428.16 Aligned_cols=375 Identities=19% Similarity=0.249 Sum_probs=326.8
Q ss_pred hccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcC-----
Q 011081 81 LKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECG----- 155 (494)
Q Consensus 81 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----- 155 (494)
..++.+.|.++|+.|. .||..+||++|.+|++.|++++|.++|++|.+.| ..++..+|..++.++.+.+
T Consensus 170 k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 170 KCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDG-SDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred cCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCChhhHHHHHHHHhcCCcHHHH
Confidence 3456677777777764 3677778888888888888888888888777665 4566667777766554332
Q ss_pred -------------CChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHH
Q 011081 156 -------------SAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREV 222 (494)
Q Consensus 156 -------------~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 222 (494)
++..+|+.||.+|++.|+ +++|.++|+.|. .+|+.+||++|.+|++.|+.++|.++|++|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~---~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGD---IEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCC---HHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 456677888888888888 888888888774 357788888888888888888888888888
Q ss_pred hcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHH
Q 011081 223 FGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAE 302 (494)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 302 (494)
.+ .|+.||..||++++.+|++.|++++|.+++.+|.+.|+.||..+|++||++|++.|++++|.
T Consensus 317 ~~----------------~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~ 380 (697)
T PLN03081 317 RD----------------SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380 (697)
T ss_pred HH----------------cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHH
Confidence 54 45799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-C
Q 011081 303 KLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCR-K 381 (494)
Q Consensus 303 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~ 381 (494)
++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .
T Consensus 381 ~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~ 456 (697)
T PLN03081 381 NVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH 456 (697)
T ss_pred HHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence 9999997 4699999999999999999999999999999999999999999999999999999999999999986 6
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHH
Q 011081 382 GFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS-LEI 460 (494)
Q Consensus 382 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~ 460 (494)
|+.|+..+|+.++.+|++.|++++|.+++++ .++.|+..+|++|+.+|...|+++.|.++++++. ++.|+ ..+
T Consensus 457 g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~----~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~ 530 (697)
T PLN03081 457 RIKPRAMHYACMIELLGREGLLDEAYAMIRR----APFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GMGPEKLNN 530 (697)
T ss_pred CCCCCccchHhHHHHHHhcCCHHHHHHHHHH----CCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CCCCCCCcc
Confidence 9999999999999999999999999998763 4778999999999999999999999999999998 45664 779
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHccccccCC
Q 011081 461 YSAFIDGYMKEGNVEMATMLRKEMFENQVRQEDG 494 (494)
Q Consensus 461 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~pd~g 494 (494)
|..|++.|++.|++++|.+++++|.+.|++...|
T Consensus 531 y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 531 YVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564 (697)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCC
Confidence 9999999999999999999999999999876544
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=2.1e-22 Score=216.71 Aligned_cols=299 Identities=12% Similarity=0.071 Sum_probs=221.4
Q ss_pred hhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccc
Q 011081 158 PFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDV 237 (494)
Q Consensus 158 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 237 (494)
+.+|..+..++...|+ +++|++.++.+.+... .+...+..+..++.+.|++++|...|+++....+
T Consensus 601 ~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------- 666 (899)
T TIGR02917 601 PEAWLMLGRAQLAAGD---LNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKP---------- 666 (899)
T ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----------
Confidence 3445555555555555 5555555555554332 1344455555555555555555555555544332
Q ss_pred ccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011081 238 KRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDV 317 (494)
Q Consensus 238 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 317 (494)
.+..+|..++..+.+.|++++|..+++.+.+.+ +.+...+..+...+.+.|++++|.+.|+.+.+.+ |+.
T Consensus 667 -------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~ 736 (899)
T TIGR02917 667 -------DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSS 736 (899)
T ss_pred -------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCc
Confidence 257788888888888888888888888887765 4566777788888888888888888888887763 455
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 011081 318 VAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGEL 397 (494)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 397 (494)
.++..++.++.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.|+++.+.. +.+..+++.+...+
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~ 814 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLY 814 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 677778888888888888888888888765 5677888888888888899999999998888775 45677888888888
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011081 398 CDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMA 477 (494)
Q Consensus 398 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 477 (494)
...|+ .+|+..+++.+...+ -+..++..+...+...|++++|.++++++++.+. .+..++..+..++.+.|+.++|
T Consensus 815 ~~~~~-~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A 890 (899)
T TIGR02917 815 LELKD-PRALEYAEKALKLAP--NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEA 890 (899)
T ss_pred HhcCc-HHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHH
Confidence 88888 778888887665433 3445667788888889999999999999988653 3788888899999999999999
Q ss_pred HHHHHHHHH
Q 011081 478 TMLRKEMFE 486 (494)
Q Consensus 478 ~~~~~~m~~ 486 (494)
.+++++|++
T Consensus 891 ~~~~~~~~~ 899 (899)
T TIGR02917 891 RKELDKLLN 899 (899)
T ss_pred HHHHHHHhC
Confidence 999988863
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.93 E-value=1e-21 Score=211.51 Aligned_cols=374 Identities=13% Similarity=0.049 Sum_probs=262.3
Q ss_pred ccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhh--------
Q 011081 82 KNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRE-------- 153 (494)
Q Consensus 82 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------- 153 (494)
.++++.|++++..+.... +.+..+|..+..++...|++++|...++.+++..... ...+..+...+..
T Consensus 444 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~~A~ 519 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKKQ--PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDF--FPAAANLARIDIQEGNPDDAI 519 (899)
T ss_pred cCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHCCCHHHHH
Confidence 455666666666554322 4456677777777777777777777777766532211 1111111111111
Q ss_pred ---------cCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhc
Q 011081 154 ---------CGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFG 224 (494)
Q Consensus 154 ---------~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 224 (494)
...+..++..+...+.+.|+ .++|...++++.+.+. .+...+..+...|.+.|++++|.++++.+..
T Consensus 520 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 520 QRFEKVLTIDPKNLRAILALAGLYLRTGN---EEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12234455556666666666 6666666666665442 2445566666666666777777776666654
Q ss_pred CCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHH
Q 011081 225 LDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKL 304 (494)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 304 (494)
.. +.+..+|..+..+|.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|..+
T Consensus 596 ~~-----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 657 (899)
T TIGR02917 596 AA-----------------PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITS 657 (899)
T ss_pred cC-----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 33 2367778888888888888888888888887654 34566777888888888888888888
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011081 305 WEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFE 384 (494)
Q Consensus 305 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 384 (494)
|+.+.+.. +.+..++..++..+...|++++|.++++.+.+.+ +.+...+..+...+...|++++|.+.|+.+...+
T Consensus 658 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-- 733 (899)
T TIGR02917 658 LKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA-- 733 (899)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--
Confidence 88887764 4467788888888888888888888888887775 5667777888888888888888888888887764
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011081 385 PEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAF 464 (494)
Q Consensus 385 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 464 (494)
|+..++..+...+.+.|+.++|.+.+++.+... +.+...+..+...|...|+.++|.++|+++.+.. +.+..++..+
T Consensus 734 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l 810 (899)
T TIGR02917 734 PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH--PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNL 810 (899)
T ss_pred CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 444667778888888888888888888666543 3466778888888888888888888888888763 4567788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 465 IDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 465 i~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
...+.+.|+ ++|+.+++++.+..+
T Consensus 811 ~~~~~~~~~-~~A~~~~~~~~~~~~ 834 (899)
T TIGR02917 811 AWLYLELKD-PRALEYAEKALKLAP 834 (899)
T ss_pred HHHHHhcCc-HHHHHHHHHHHhhCC
Confidence 888888888 778888888877544
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1.4e-21 Score=189.29 Aligned_cols=303 Identities=15% Similarity=0.170 Sum_probs=252.9
Q ss_pred HHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccC
Q 011081 167 CCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPN 246 (494)
Q Consensus 167 ~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 246 (494)
.+...|+ +++|++.|.++.+.+.. +..++..+...+...|++++|..+++.+...... .....
T Consensus 44 ~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-------------~~~~~ 106 (389)
T PRK11788 44 NFLLNEQ---PDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDL-------------TREQR 106 (389)
T ss_pred HHHhcCC---hHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCC-------------CHHHH
Confidence 3556677 99999999999987533 6678999999999999999999999999764321 00112
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HhHHHH
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD----VVAYNT 322 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~ 322 (494)
...+..+...|.+.|++++|+.+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...|..
T Consensus 107 ~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (389)
T PRK11788 107 LLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCE 185 (389)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 4678899999999999999999999998763 45678899999999999999999999999988653322 224667
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 011081 323 IIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRR 402 (494)
Q Consensus 323 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 402 (494)
+...+.+.|++++|..+|+++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+......+++.++.+|...|+
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence 8888999999999999999998764 445678888999999999999999999999886533335678889999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHH
Q 011081 403 VFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMK---EGNVEMATM 479 (494)
Q Consensus 403 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~ 479 (494)
+++|...+++.... .|+...+..++..+.+.|++++|.++++++.+. .|+..++..++..+.. .|+.+++..
T Consensus 265 ~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~ 339 (389)
T PRK11788 265 EAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLL 339 (389)
T ss_pred HHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHH
Confidence 99999999965554 467777788999999999999999999999865 7999999999988775 568999999
Q ss_pred HHHHHHHccccccC
Q 011081 480 LRKEMFENQVRQED 493 (494)
Q Consensus 480 ~~~~m~~~~~~pd~ 493 (494)
++++|.+.+++|+.
T Consensus 340 ~~~~~~~~~~~~~p 353 (389)
T PRK11788 340 LLRDLVGEQLKRKP 353 (389)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999998887764
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=1.1e-20 Score=183.14 Aligned_cols=302 Identities=15% Similarity=0.119 Sum_probs=249.9
Q ss_pred HHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCC
Q 011081 113 HILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGL 192 (494)
Q Consensus 113 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~ 192 (494)
..+...|++++|...+..+++.. ..+..++..+...+...|+ +++|.++++.+.+.+.
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-------------------p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~~ 100 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-------------------PETVELHLALGNLFRRRGE---VDRAIRIHQNLLSRPD 100 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-------------------cccHHHHHHHHHHHHHcCc---HHHHHHHHHHHhcCCC
Confidence 34567789999999999998732 2234577788888999999 9999999999988543
Q ss_pred CcC---hHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHH
Q 011081 193 SVK---VSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDV 269 (494)
Q Consensus 193 ~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 269 (494)
.++ ...+..+...|.+.|++++|.++|+++.+..+ .+..+++.++..+.+.|++++|.+.
T Consensus 101 ~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~-----------------~~~~~~~~la~~~~~~g~~~~A~~~ 163 (389)
T PRK11788 101 LTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGD-----------------FAEGALQQLLEIYQQEKDWQKAIDV 163 (389)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCc-----------------chHHHHHHHHHHHHHhchHHHHHHH
Confidence 222 35678889999999999999999999976532 3788999999999999999999999
Q ss_pred HHHHHHcCCCcC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011081 270 WVEMARLGCEPD----CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGL 345 (494)
Q Consensus 270 ~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (494)
++.+.+.+..+. ...+..+...+.+.|++++|.++|+++.+.. +.+...+..+...|.+.|++++|.++|+++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 242 (389)
T PRK11788 164 AERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEE 242 (389)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999988653322 1245677788899999999999999998764 34567888899999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHH
Q 011081 346 SGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKS 425 (494)
Q Consensus 346 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 425 (494)
.+......+++.++.+|...|++++|...++.+.+.. |+...+..+...+.+.|++++|...+++.+.. .|+..+
T Consensus 243 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~ 317 (389)
T PRK11788 243 QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRG 317 (389)
T ss_pred HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHH
Confidence 6423335678899999999999999999999998864 66667788999999999999999999976665 589999
Q ss_pred HHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHH
Q 011081 426 YMFLIKGLCE---EGKMEEALKVQAEMVGKGFEPSLE 459 (494)
Q Consensus 426 ~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~ 459 (494)
++.++..+.. .|+.+++..++++|.+.++.|++.
T Consensus 318 ~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 318 FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 9988888775 568999999999999887777654
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=5.6e-18 Score=172.52 Aligned_cols=334 Identities=9% Similarity=0.038 Sum_probs=268.5
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHH
Q 011081 109 ATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLM 188 (494)
Q Consensus 109 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~ 188 (494)
..++..+.+.|+++.|..+++..+... ...+.+...++.++...|+ .++|++.++++.
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~-------------------p~~~~~l~~l~~~~l~~g~---~~~A~~~l~~~l 103 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTA-------------------KNGRDLLRRWVISPLASSQ---PDAVLQVVNKLL 103 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhC-------------------CCchhHHHHHhhhHhhcCC---HHHHHHHHHHHH
Confidence 345677888899999999998887632 2334555566667778899 999999999999
Q ss_pred hCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHH
Q 011081 189 SRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVED 268 (494)
Q Consensus 189 ~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 268 (494)
+.... +...+..+...+...|++++|.+.|+++....+. +...+..+...+...|++++|..
T Consensus 104 ~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-----------------~~~a~~~la~~l~~~g~~~eA~~ 165 (656)
T PRK15174 104 AVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG-----------------NSQIFALHLRTLVLMDKELQAIS 165 (656)
T ss_pred HhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------cHHHHHHHHHHHHHCCChHHHHH
Confidence 86543 6677888899999999999999999999876543 67889999999999999999999
Q ss_pred HHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 011081 269 VWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGV 348 (494)
Q Consensus 269 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 348 (494)
.++.+.... +.+...+..+ ..+...|++++|...++.+.+....++...+..+..++.+.|++++|+..|+++.+..
T Consensus 166 ~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~- 242 (656)
T PRK15174 166 LARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG- 242 (656)
T ss_pred HHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-
Confidence 999887664 2233344333 3578899999999999998876433455556666788999999999999999999875
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH
Q 011081 349 ESSSVTFEHLVNGYCRAGDVDS----AILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEK 424 (494)
Q Consensus 349 ~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~ 424 (494)
+.+...+..+...|...|++++ |...|+...+.. +.+...+..+...+...|++++|+..+++.+.... .+..
T Consensus 243 p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P--~~~~ 319 (656)
T PRK15174 243 LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP--DLPY 319 (656)
T ss_pred CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHH
Confidence 5567888889999999999986 899999998864 33567888999999999999999999997776532 3455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 425 SYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEI-YSAFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
.+..+..++.+.|++++|.+.++++.+. .|+... +..+..++...|+.++|...|++..+..++
T Consensus 320 a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 320 VRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 6777889999999999999999999865 555433 444567889999999999999999887654
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=2.6e-16 Score=160.80 Aligned_cols=365 Identities=10% Similarity=-0.024 Sum_probs=265.0
Q ss_pred HhhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCCh
Q 011081 79 LGLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAP 158 (494)
Q Consensus 79 ~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (494)
+...++++.|+..|..+... .|+...|..+..++.+.|++++|+..++.+++.. ....
T Consensus 137 ~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-------------------p~~~ 194 (615)
T TIGR00990 137 AYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-------------------PDYS 194 (615)
T ss_pred HHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-------------------CCCH
Confidence 34457888899999887643 4677788888888999999999999998887632 1223
Q ss_pred hhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCC----------------------------Cc-ChHhHHHH-------
Q 011081 159 FVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGL----------------------------SV-KVSTCNAL------- 202 (494)
Q Consensus 159 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~----------------------------~~-~~~~~~~l------- 202 (494)
.++..+..+|...|+ +++|+..|......+. .| +...+..+
T Consensus 195 ~a~~~~a~a~~~lg~---~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 271 (615)
T TIGR00990 195 KALNRRANAYDGLGK---YADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSF 271 (615)
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc
Confidence 445555556666666 6666554433221110 00 00000000
Q ss_pred -----------------------HHHH------HcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHH
Q 011081 203 -----------------------IWEV------SRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNAL 253 (494)
Q Consensus 203 -----------------------l~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 253 (494)
+... ...+++++|.+.|+..++.+.. .......|+.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~--------------~~~~a~a~~~l 337 (615)
T TIGR00990 272 RPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKL--------------GEKEAIALNLR 337 (615)
T ss_pred cCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC--------------ChhhHHHHHHH
Confidence 0000 1124567777777777654211 12256778888
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCH
Q 011081 254 MVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEM 333 (494)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 333 (494)
...+...|++++|+..|++..+.. +-+...|..+...+...|++++|...|+...+.. +.+..+|..+...|...|++
T Consensus 338 g~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~ 415 (615)
T TIGR00990 338 GTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEF 415 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 999999999999999999998763 2235688889999999999999999999998774 45688999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 334 ARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKAR 413 (494)
Q Consensus 334 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 413 (494)
++|...|++..+.. +.+...+..+...+.+.|++++|+..|++.++.. +.+...++.+...+...|++++|++.|+..
T Consensus 416 ~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~A 493 (615)
T TIGR00990 416 AQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTA 493 (615)
T ss_pred HHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999998875 5567788889999999999999999999998763 335678888999999999999999999976
Q ss_pred HHhCCCC-C---CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011081 414 VVKFGLF-P---TE-KSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS-LEIYSAFIDGYMKEGNVEMATMLRKEMFEN 487 (494)
Q Consensus 414 ~~~~~~~-p---~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 487 (494)
+....-. + +. ..++.....+...|++++|.+++++.++. .|+ ...+..+...+...|++++|.++|++..+.
T Consensus 494 l~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 494 IELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6542110 1 11 11222223344469999999999998865 444 567888999999999999999999998765
Q ss_pred c
Q 011081 488 Q 488 (494)
Q Consensus 488 ~ 488 (494)
.
T Consensus 572 ~ 572 (615)
T TIGR00990 572 A 572 (615)
T ss_pred h
Confidence 4
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=1.2e-16 Score=162.89 Aligned_cols=325 Identities=11% Similarity=0.021 Sum_probs=258.7
Q ss_pred HhhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCCh
Q 011081 79 LGLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAP 158 (494)
Q Consensus 79 ~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (494)
....|++..|+.++........ -+......++.++...|+++.|...++.++... ..++
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p--~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-------------------P~~~ 110 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAK--NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-------------------VCQP 110 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCC--CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-------------------CCCh
Confidence 3456789999999888765542 334455555667777999999999999988732 3345
Q ss_pred hhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccc
Q 011081 159 FVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVK 238 (494)
Q Consensus 159 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 238 (494)
..+..+...+...|+ .++|++.+++..+.... +...+..+..++...|+.++|...++.+....+.
T Consensus 111 ~a~~~la~~l~~~g~---~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~---------- 176 (656)
T PRK15174 111 EDVLLVASVLLKSKQ---YATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP---------- 176 (656)
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC----------
Confidence 667777888899999 99999999999886432 5778888999999999999999999988665442
Q ss_pred cccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 011081 239 RVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVV 318 (494)
Q Consensus 239 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 318 (494)
+...+..+ ..+.+.|++++|...++.+.+..-.++...+..+...+.+.|++++|...++...+.. +.+..
T Consensus 177 -------~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~ 247 (656)
T PRK15174 177 -------RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAA 247 (656)
T ss_pred -------CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHH
Confidence 33344333 3478899999999999998776433445555666788999999999999999998875 45678
Q ss_pred HHHHHHHHHHccCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 011081 319 AYNTIIGGFCEIGEMAR----AEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLI 394 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 394 (494)
.+..+...|...|++++ |...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La 325 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 88899999999999986 899999998874 5567889999999999999999999999999864 23456677788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 395 GELCDKRRVFEALDILKARVVKFGLFPTEK-SYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 395 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
..+.+.|++++|++.++..+... |+.. .+..+..++...|+.++|.+.|++..+.
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~---P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREK---GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999766553 4443 3444567789999999999999999865
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.83 E-value=9.1e-16 Score=167.01 Aligned_cols=392 Identities=10% Similarity=0.018 Sum_probs=236.6
Q ss_pred HhhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCCh
Q 011081 79 LGLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAP 158 (494)
Q Consensus 79 ~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (494)
....++++.|+..|..+.... +.+...+..+..++.+.|++++|+..++.+++..........+..++.... .
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~-----~ 351 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR-----Y 351 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh-----H
Confidence 344578889999999886543 347788999999999999999999999999875432222222333322100 0
Q ss_pred hhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccc---ccc
Q 011081 159 FVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAG---IGK 235 (494)
Q Consensus 159 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~ 235 (494)
.........+.+.|+ +++|++.|+++.+.... +...+..+..++...|++++|.+.|++++...+..... +..
T Consensus 352 ~~~~~~g~~~~~~g~---~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~ 427 (1157)
T PRK11447 352 WLLIQQGDAALKANN---LAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLAN 427 (1157)
T ss_pred HHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 111223445677888 89999999888886432 56677778888888899999999998888766541110 000
Q ss_pred --------cccccc-ccc-------------cCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHH
Q 011081 236 --------DVKRVV-RVR-------------PNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFC 293 (494)
Q Consensus 236 --------~~~~~~-~~~-------------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 293 (494)
++.... ... -....+..+...+...|++++|++.|++..+.. +-+...+..+...|.
T Consensus 428 l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 428 LYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLR 506 (1157)
T ss_pred HHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 000000 000 011234455667778899999999999888764 334566777888899
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC--------------------------
Q 011081 294 EERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSG-------------------------- 347 (494)
Q Consensus 294 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------------------- 347 (494)
+.|++++|...++++.+.. +.+...+..+...+.+.|+.++|+..++.+....
T Consensus 507 ~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999999999887653 2244444444444455566666655555432211
Q ss_pred -------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 348 -------------VESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARV 414 (494)
Q Consensus 348 -------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 414 (494)
.+.+...+..+...+.+.|++++|+..|+..++.. +.+...+..+...+...|+.++|++.++..+
T Consensus 586 ~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 586 SGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred CCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 12333444555556666666666666666666543 2245555666666666666666666666333
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 415 VKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGF--EP---SLEIYSAFIDGYMKEGNVEMATMLRKEMFE 486 (494)
Q Consensus 415 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 486 (494)
... +.+...+..+..++...|++++|.++++++....- .| +...+..+...+...|+.++|...+++.+.
T Consensus 665 ~~~--p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 665 ATA--NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred ccC--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 221 11233444555556666666666666666654311 11 123444455556666666666666666543
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.81 E-value=2.4e-15 Score=163.69 Aligned_cols=277 Identities=12% Similarity=0.097 Sum_probs=175.2
Q ss_pred hccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCC------------------hHH
Q 011081 81 LKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDP------------------KLK 142 (494)
Q Consensus 81 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------------------~~~ 142 (494)
..++++.|++.++.+.... +-+...+..+...+...|+.++|+..++.+...+.... ...
T Consensus 159 ~~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~ 236 (1157)
T PRK11447 159 LPAQRPEAINQLQRLNADY--PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVA 236 (1157)
T ss_pred CCccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHH
Confidence 3467788888888886554 34566788888889899999999999999876432110 111
Q ss_pred HHHHHHHHhhhcC----------------CChh-hHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHH
Q 011081 143 LFEVLVKTYRECG----------------SAPF-VFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWE 205 (494)
Q Consensus 143 ~~~~l~~~~~~~~----------------~~~~-~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 205 (494)
.+...+..+.... .++. ........+...|+ +++|+..|++..+.... +...+..+..+
T Consensus 237 ~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~---~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~ 312 (1157)
T PRK11447 237 ALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQ---GGKAIPELQQAVRANPK-DSEALGALGQA 312 (1157)
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 1111111111100 0110 01122455677888 99999999999986533 77889999999
Q ss_pred HHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHH------------HHHHHHHhcCCHhHHHHHHHHH
Q 011081 206 VSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFN------------ALMVGFYREGAFEKVEDVWVEM 273 (494)
Q Consensus 206 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~------------~li~~~~~~g~~~~a~~~~~~m 273 (494)
+.+.|++++|.+.|++..+..+. .+....|. .....+.+.|++++|+..|++.
T Consensus 313 ~~~~g~~~eA~~~l~~Al~~~p~---------------~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A 377 (1157)
T PRK11447 313 YSQQGDRARAVAQFEKALALDPH---------------SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA 377 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC---------------ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999876654 11111111 1233455667777777777776
Q ss_pred HHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHH--------------------------------
Q 011081 274 ARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYN-------------------------------- 321 (494)
Q Consensus 274 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-------------------------------- 321 (494)
.+.. +.+...+..+...+...|++++|++.|++..+.. +.+...+.
T Consensus 378 l~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~ 455 (1157)
T PRK11447 378 RQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDI 455 (1157)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHH
Confidence 6653 2344555666666777777777777777666542 11222222
Q ss_pred ----------HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011081 322 ----------TIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 322 ----------~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 381 (494)
.+...+...|++++|++.|++..+.. +-+...+..+...|.+.|++++|...++++.+.
T Consensus 456 ~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~ 524 (1157)
T PRK11447 456 ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ 524 (1157)
T ss_pred HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 22334445677777777777777653 335556666777777777777777777777653
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.80 E-value=1.5e-16 Score=148.77 Aligned_cols=264 Identities=15% Similarity=0.181 Sum_probs=166.3
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 011081 198 TCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLG 277 (494)
Q Consensus 198 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 277 (494)
+|..|...+-..|++-.|.+.|+++...+|. -...|-.|...|.+.+.+++|...|.+.....
T Consensus 220 awsnLg~~f~~~Gei~~aiq~y~eAvkldP~-----------------f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 220 AWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-----------------FLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred eehhcchHHhhcchHHHHHHHHHHhhcCCCc-----------------chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 3444444444455555555555555443332 24556667777777777777777766655442
Q ss_pred CCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011081 278 CEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD-VVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFE 356 (494)
Q Consensus 278 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 356 (494)
+-....|..+...|...|.+|.|+..|++.++. .|+ ...|+.|..++-..|+..+|++.|.+..... +--..+.+
T Consensus 283 -pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~ 358 (966)
T KOG4626|consen 283 -PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMN 358 (966)
T ss_pred -CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHH
Confidence 223455666666677777777777777777665 333 4567777777777777777777777766553 33445666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 011081 357 HLVNGYCRAGDVDSAILVYNDMCRKGFEPE-GSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTE-KSYMFLIKGLC 434 (494)
Q Consensus 357 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~ 434 (494)
.|...|...|.+++|..+|....+- .|. ...++.|...|-++|++++|+..+++.+. +.|+. ..|+.+...|-
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHH
Confidence 6777777777777777777766653 232 34566677777777777777777765443 34443 35667777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 435 EEGKMEEALKVQAEMVGKGFEPS-LEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
..|+.+.|.+.+.+.+. +.|. ...++.|...|...|++.+|+.-+++.++..+
T Consensus 434 e~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 77777777777777663 4554 45666677777777777777777777766444
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.80 E-value=8.1e-17 Score=150.44 Aligned_cols=336 Identities=15% Similarity=0.149 Sum_probs=277.0
Q ss_pred CCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHH
Q 011081 103 HSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVD 182 (494)
Q Consensus 103 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~ 182 (494)
....+|..+.+++-..|+++.|+..++.+++.. ......|..+..++...|+ .+.|.+
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-------------------p~fida~inla~al~~~~~---~~~a~~ 171 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELK-------------------PKFIDAYINLAAALVTQGD---LELAVQ 171 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-------------------chhhHHHhhHHHHHHhcCC---CcccHH
Confidence 345788888888888899999999998887732 2234667778888888888 888999
Q ss_pred HHHHHHhCCCCcChHh-HHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcC
Q 011081 183 IVRMLMSRGLSVKVST-CNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREG 261 (494)
Q Consensus 183 ~~~~m~~~g~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 261 (494)
.|...++. .|+... ...+...+...|++++|...|.++++..+. =.+.|..|...+-..|
T Consensus 172 ~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~-----------------fAiawsnLg~~f~~~G 232 (966)
T KOG4626|consen 172 CFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPC-----------------FAIAWSNLGCVFNAQG 232 (966)
T ss_pred HHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCc-----------------eeeeehhcchHHhhcc
Confidence 88888774 454443 334555566678889999988888765443 4678999999999999
Q ss_pred CHhHHHHHHHHHHHcCCCcC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHH
Q 011081 262 AFEKVEDVWVEMARLGCEPD-CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFF 340 (494)
Q Consensus 262 ~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 340 (494)
+...|+..|++.... .|+ ...|-.|...|...+.++.|...|....... +...+++..|...|...|.+|.|+..|
T Consensus 233 ei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Y 309 (966)
T KOG4626|consen 233 EIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTY 309 (966)
T ss_pred hHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHH
Confidence 999999999998875 444 5689999999999999999999999887763 335678888889999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 011081 341 REMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLF 420 (494)
Q Consensus 341 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 420 (494)
++..+.. +.=...|+.|..++-..|++.+|.+.|+..+... .--....+.|...+...|.+++|..+|...+.- .
T Consensus 310 kral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v---~ 384 (966)
T KOG4626|consen 310 KRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV---F 384 (966)
T ss_pred HHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh---C
Confidence 9998864 3346889999999999999999999999998864 334667889999999999999999999866643 3
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 421 PT-EKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS-LEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 421 p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
|. ....+.|...|-+.|++++|+.-+++.+ .+.|+ ...|+.+...|-..|+.+.|...+.+.+..++
T Consensus 385 p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal--rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP 453 (966)
T KOG4626|consen 385 PEFAAAHNNLASIYKQQGNLDDAIMCYKEAL--RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINP 453 (966)
T ss_pred hhhhhhhhhHHHHHHhcccHHHHHHHHHHHH--hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc
Confidence 44 3467889999999999999999999998 57887 67899999999999999999999999888665
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=1.3e-14 Score=151.13 Aligned_cols=222 Identities=9% Similarity=0.036 Sum_probs=163.6
Q ss_pred hHHHHHHHHHHHc-CCCcCHh-HH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHhHHHHHHHHHHccCCHHHH
Q 011081 264 EKVEDVWVEMARL-GCEPDCY-SY----SVLMAVFCEERRMREAEKLWEEMRDKNVE-HDVVAYNTIIGGFCEIGEMARA 336 (494)
Q Consensus 264 ~~a~~~~~~m~~~-g~~p~~~-~~----~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A 336 (494)
++|++.++.+.+. ...|+.. .+ ...+.++...|++++|+..|+.+.+.+.+ |+. .-..+...|...|++++|
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A 291 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKA 291 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHH
Confidence 5677777777754 2233321 11 11133456779999999999999887532 322 222357789999999999
Q ss_pred HHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---hhhHHHHHHHHHh
Q 011081 337 EEFFREMGLSGVES---SSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGF-----------EPE---GSTIEVLIGELCD 399 (494)
Q Consensus 337 ~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~ 399 (494)
+..|+++.+..... .......+..++...|++++|.++++.+.+... .|+ ...+..+...+..
T Consensus 292 ~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~ 371 (765)
T PRK10049 292 QSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY 371 (765)
T ss_pred HHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH
Confidence 99999987653111 134566677788999999999999999987531 123 1244567778889
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 011081 400 KRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS-LEIYSAFIDGYMKEGNVEMAT 478 (494)
Q Consensus 400 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~ 478 (494)
.|+.++|++.+++..... +-+...+..+...+...|+.++|++.+++.++. .|+ ...+..+...+...|++++|.
T Consensus 372 ~g~~~eA~~~l~~al~~~--P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~ 447 (765)
T PRK10049 372 SNDLPQAEMRARELAYNA--PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMD 447 (765)
T ss_pred cCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHH
Confidence 999999999999776654 345667888899999999999999999999865 565 667777778899999999999
Q ss_pred HHHHHHHHcccc
Q 011081 479 MLRKEMFENQVR 490 (494)
Q Consensus 479 ~~~~~m~~~~~~ 490 (494)
.+++++++..+.
T Consensus 448 ~~~~~ll~~~Pd 459 (765)
T PRK10049 448 VLTDDVVAREPQ 459 (765)
T ss_pred HHHHHHHHhCCC
Confidence 999999986654
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=6.1e-15 Score=150.73 Aligned_cols=352 Identities=11% Similarity=0.037 Sum_probs=259.3
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHH
Q 011081 108 YATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRML 187 (494)
Q Consensus 108 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m 187 (494)
+......+.+.|+++.|+..|+.++.. .|++..|..+..+|.+.|+ +++|++.+...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--------------------~p~~~~~~n~a~~~~~l~~---~~~Ai~~~~~a 186 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--------------------KPDPVYYSNRAACHNALGD---WEKVVEDTTAA 186 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------CCchHHHHHHHHHHHHhCC---HHHHHHHHHHH
Confidence 345567778889999999999988762 2345567778888999999 99999999999
Q ss_pred HhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccc--------c----ccccccccccc----CHH---
Q 011081 188 MSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGI--------G----KDVKRVVRVRP----NVH--- 248 (494)
Q Consensus 188 ~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~----~~~~~~~~~~p----~~~--- 248 (494)
++.... +...|..+..+|...|++++|..-|......++...... . ..+.......| ...
T Consensus 187 l~l~p~-~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~ 265 (615)
T TIGR00990 187 LELDPD-YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVG 265 (615)
T ss_pred HHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHH
Confidence 986533 677888999999999999999887765543322100000 0 00000000000 000
Q ss_pred ---------------------------HHHHHHHH---HHhcCCHhHHHHHHHHHHHcC-CCc-CHhHHHHHHHHHHhcC
Q 011081 249 ---------------------------TFNALMVG---FYREGAFEKVEDVWVEMARLG-CEP-DCYSYSVLMAVFCEER 296 (494)
Q Consensus 249 ---------------------------~~~~li~~---~~~~g~~~~a~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g 296 (494)
.+..+... ....+++++|.+.|++..+.+ ..| +...|..+...+...|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g 345 (615)
T TIGR00990 266 NYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG 345 (615)
T ss_pred HHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC
Confidence 00000000 012367899999999998765 223 4567888888999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011081 297 RMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYN 376 (494)
Q Consensus 297 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 376 (494)
++++|...++...+.. +.+...|..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...|+
T Consensus 346 ~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 423 (615)
T TIGR00990 346 KHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQ 423 (615)
T ss_pred CHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998863 3346688899999999999999999999998874 5567899999999999999999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011081 377 DMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEP 456 (494)
Q Consensus 377 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 456 (494)
+.++.. +.+...+..+...+.+.|++++|+..|++.+... +-+...|+.+..++...|++++|.+.|++..+. .|
T Consensus 424 kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p 498 (615)
T TIGR00990 424 KSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EK 498 (615)
T ss_pred HHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CC
Confidence 998875 3356677788888999999999999999777653 234678888999999999999999999998865 33
Q ss_pred C--H------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 457 S--L------EIYSAFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 457 ~--~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
+ . ..++..+..+...|++++|.+++++.++.++.
T Consensus 499 ~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 499 ETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred ccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 2 1 11222222344469999999999998887643
No 20
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=6.1e-15 Score=132.33 Aligned_cols=349 Identities=14% Similarity=0.157 Sum_probs=258.5
Q ss_pred CCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHH
Q 011081 102 KHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCV 181 (494)
Q Consensus 102 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~ 181 (494)
+-+..+|..+|.++|+--+.+.|.+++.+.-.. +......+||.+|.+-. +....
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~------------------k~kv~~~aFN~lI~~~S-------~~~~K 258 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAA------------------KGKVYREAFNGLIGASS-------YSVGK 258 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh------------------hheeeHHhhhhhhhHHH-------hhccH
Confidence 446689999999999999999999999876552 23445678888877654 33346
Q ss_pred HHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcC
Q 011081 182 DIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREG 261 (494)
Q Consensus 182 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 261 (494)
++..+|....+.||..|+|+++.+.++.|+++.|.+.+-+++... +..|+.|...+|..+|..+++.+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~Em------------KeiGVePsLsSyh~iik~f~re~ 326 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEM------------KEIGVEPSLSSYHLIIKNFKRES 326 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHH------------HHhCCCcchhhHHHHHHHhcccC
Confidence 789999999999999999999999999999887766555443321 34789999999999999999998
Q ss_pred CHhH-HHHHHHHHHHc----CCC---c-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HhHHHHHHH
Q 011081 262 AFEK-VEDVWVEMARL----GCE---P-DCYSYSVLMAVFCEERRMREAEKLWEEMRDKN----VEHD---VVAYNTIIG 325 (494)
Q Consensus 262 ~~~~-a~~~~~~m~~~----g~~---p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~~---~~~~~~li~ 325 (494)
+..+ +..++.+.... .++ | |...|...+..|.+..+.+-|.++...+.... +.|+ ..-|..+..
T Consensus 327 dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~ 406 (625)
T KOG4422|consen 327 DPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFD 406 (625)
T ss_pred CchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHH
Confidence 8755 44555554432 222 2 44567888999999999999999887665421 2222 234677888
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-C--
Q 011081 326 GFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKR-R-- 402 (494)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~-- 402 (494)
..|+....+.-.+.|+.|.-+-.-|+..+...++++..-.|.++-.-++|.+++..|..........++..+++.. .
T Consensus 407 licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~ 486 (625)
T KOG4422|consen 407 LICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPL 486 (625)
T ss_pred HHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCC
Confidence 8899999999999999999887788999999999999999999999999999998885555555555555555443 1
Q ss_pred -----------------HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHH
Q 011081 403 -----------------VFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKG----FEPSLEIY 461 (494)
Q Consensus 403 -----------------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~~~ 461 (494)
+.++.+.-...+.+.. ......+.+.-.+.+.|+.++|.+++..+.+.+ ..|.....
T Consensus 487 tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm 564 (625)
T KOG4422|consen 487 TPEREQLQVAFAKCAADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAM 564 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhH
Confidence 1111111111233333 344557788888999999999999999996553 23444445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 462 SAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 462 ~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
..+++......+...|..+++-|...+.
T Consensus 565 ~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 565 AELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 5677778888899999999998876654
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.72 E-value=8.7e-13 Score=135.31 Aligned_cols=198 Identities=11% Similarity=0.036 Sum_probs=138.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHH
Q 011081 289 MAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSG-----VESSSVTFEHLVNGYC 363 (494)
Q Consensus 289 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~li~~~~ 363 (494)
+-++.+.|++.++++.|+.+...|.+....+-.++.++|...+++++|+.+|+++.... ..++......|..+|.
T Consensus 299 l~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l 378 (822)
T PRK14574 299 LGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN 378 (822)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence 34566677888888888888877766566677788888888888888888888876542 1223344567778888
Q ss_pred hcCCHHHHHHHHHHHHHCCC-------------CCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011081 364 RAGDVDSAILVYNDMCRKGF-------------EPEGS-TIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFL 429 (494)
Q Consensus 364 ~~g~~~~a~~~~~~m~~~~~-------------~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 429 (494)
..+++++|..+++.+.+.-. .||-. .+..++..+...|+..+|++.+++.+... +-|......+
T Consensus 379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--P~n~~l~~~~ 456 (822)
T PRK14574 379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA--PANQNLRIAL 456 (822)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 88888888888888876311 11211 23345666777888888888888665543 3466677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 430 IKGLCEEGKMEEALKVQAEMVGKGFEP-SLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
...+...|...+|++.++..... .| +..+......++...|++++|..+.+.+.+..+.
T Consensus 457 A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 457 ASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCC
Confidence 88888888888888888666643 44 4566667777778888888888888777765543
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.72 E-value=7.2e-13 Score=138.21 Aligned_cols=377 Identities=10% Similarity=0.032 Sum_probs=277.6
Q ss_pred CCCCChhHHHHH--HHhhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHH
Q 011081 66 RSGLTPTQFSQI--ALGLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKL 143 (494)
Q Consensus 66 ~~~~~~~~~~~~--~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 143 (494)
...++|..+... +....++.+.|++.+....... +.+...+..+..++.+.|++++|..+++.+++.
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--------- 78 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--------- 78 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------
Confidence 345677766543 3566788999999888775322 345557899999999999999999999998762
Q ss_pred HHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHh
Q 011081 144 FEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVF 223 (494)
Q Consensus 144 ~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 223 (494)
.+.++.....+...+...|+ .++|+..+++..+.... +.. +..+..++...|+.++|...++++.
T Consensus 79 ----------~P~~~~a~~~la~~l~~~g~---~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al 143 (765)
T PRK10049 79 ----------EPQNDDYQRGLILTLADAGQ---YDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQAL 143 (765)
T ss_pred ----------CCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 23456777788899999999 99999999999886433 555 8888999999999999999999998
Q ss_pred cCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH------hHHHHHHHHHH----
Q 011081 224 GLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDC------YSYSVLMAVFC---- 293 (494)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~~~~~li~~~~---- 293 (494)
+..|. +...+..+...+...|..++|+..++.... .|+. .....++....
T Consensus 144 ~~~P~-----------------~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~ 203 (765)
T PRK10049 144 PRAPQ-----------------TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTR 203 (765)
T ss_pred HhCCC-----------------CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccccc
Confidence 87654 677777788888899999999999986654 2321 11222222222
Q ss_pred -hcCCH---HHHHHHHHHHHhC-CCCCCHh-HH----HHHHHHHHccCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHH
Q 011081 294 -EERRM---REAEKLWEEMRDK-NVEHDVV-AY----NTIIGGFCEIGEMARAEEFFREMGLSGVE-SSSVTFEHLVNGY 362 (494)
Q Consensus 294 -~~g~~---~~a~~~~~~m~~~-g~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~ 362 (494)
..+++ ++|++.++.+.+. ...|+.. .+ ...+..+...|++++|+..|+++.+.+.+ |+. .-..+...|
T Consensus 204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~y 282 (765)
T PRK10049 204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAY 282 (765)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHH
Confidence 22334 7788888888754 1223221 11 11134456779999999999999987532 332 222357789
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCC----------CCCC---HHHH
Q 011081 363 CRAGDVDSAILVYNDMCRKGFEP---EGSTIEVLIGELCDKRRVFEALDILKARVVKFG----------LFPT---EKSY 426 (494)
Q Consensus 363 ~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----------~~p~---~~~~ 426 (494)
...|++++|+..|+.+.+..... .......+..++...|++++|.+.++....... -.|+ ...+
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~ 362 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ 362 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence 99999999999999988653211 123456667788999999999999986554421 1233 2345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 427 MFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
..+...+...|+.++|+++++++... .+.+...+..+...+...|+.++|++.+++.++..|.
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd 425 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR 425 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Confidence 66778889999999999999999875 3446888999999999999999999999999987643
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1.5e-13 Score=123.44 Aligned_cols=321 Identities=15% Similarity=0.193 Sum_probs=240.5
Q ss_pred hHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHc--CCChhH-HHHHHHHHhcCCccc--ccccc
Q 011081 160 VFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSR--GKGVIS-GYEIYREVFGLDSDA--TAGIG 234 (494)
Q Consensus 160 ~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~--~~~~~~-a~~~~~~~~~~~~~~--~~~~~ 234 (494)
+-+.|++.- ..|. +..+.-+|+.|...|++.+...-..|++..+- ..+..- -++.|-.|...+.+. ...-|
T Consensus 118 ~E~nL~kmI-S~~E---vKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 118 TENNLLKMI-SSRE---VKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred chhHHHHHH-hhcc---cchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 344444433 3455 88999999999999998888887777765443 333322 233344443332221 11112
Q ss_pred ccccccccc-ccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011081 235 KDVKRVVRV-RPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNV 313 (494)
Q Consensus 235 ~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 313 (494)
..+.-.+.. +.+..++..||.+.|+--..+.|.+++.+-.+...+.+..+||.+|.+-.-..+ .++..+|....+
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm 269 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKM 269 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhc
Confidence 222222333 347899999999999999999999999999988889999999999987554333 788999999999
Q ss_pred CCCHhHHHHHHHHHHccCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH----CCCC
Q 011081 314 EHDVVAYNTIIGGFCEIGEMAR----AEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDS-AILVYNDMCR----KGFE 384 (494)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~~~~ 384 (494)
.||..|+|+++++..+.|+++. |.+++.+|++-|+.|...+|..+|.-+++.++..+ +..++.++.. +.++
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 9999999999999999998875 56788899999999999999999999999988755 4445544433 2333
Q ss_pred C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC----CCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011081 385 P----EGSTIEVLIGELCDKRRVFEALDILKARVVKF----GLFPTE---KSYMFLIKGLCEEGKMEEALKVQAEMVGKG 453 (494)
Q Consensus 385 p----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 453 (494)
| |...|...+..|.+..+.+.|.++.. .++.. -+.|+. .-|..+..+.|+....+.....|+.|+-.-
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~-ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHG-LLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHH-HHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 3 45567778888889999999988864 34321 122332 246677788889999999999999999887
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 454 FEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 454 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
+-|+..+...++++..-.|.++-..+++..++..|-
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 889999999999999999999999999999988773
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.64 E-value=1.7e-11 Score=126.02 Aligned_cols=190 Identities=11% Similarity=-0.012 Sum_probs=143.8
Q ss_pred HHHHHHHhhccCchhhhHHHHhhhccCCCCCCH--hHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHH
Q 011081 73 QFSQIALGLKNNPHLALRFFSFTQHKSLCKHSL--SSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKT 150 (494)
Q Consensus 73 ~~~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (494)
....++....|+...|+..|..+.... |+. ..+ .++..+...|+.++|+..++..+..
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~---P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p---------------- 97 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAG---PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS---------------- 97 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhC---ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC----------------
Confidence 444567778889999999999886544 332 234 7888888899999999999887631
Q ss_pred hhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccc
Q 011081 151 YRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDAT 230 (494)
Q Consensus 151 ~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 230 (494)
..........+...+...|+ +++|+++|+++.+.... ++..+..++..+...++.++|++.++++...
T Consensus 98 ---~n~~~~~llalA~ly~~~gd---yd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~----- 165 (822)
T PRK14574 98 ---MNISSRGLASAARAYRNEKR---WDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER----- 165 (822)
T ss_pred ---CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc-----
Confidence 11223334444668888899 99999999999987655 5677778888999999999999999999664
Q ss_pred cccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 231 AGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEM 308 (494)
Q Consensus 231 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 308 (494)
.|+...+-.++..+...++..+|++.++++.+.. +-+...+..++.++.+.|-...|.++..+-
T Consensus 166 -------------dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~ 229 (822)
T PRK14574 166 -------------DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN 229 (822)
T ss_pred -------------CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence 4455555555455545667767999999999884 446777888999999999999998776653
No 25
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=4.1e-12 Score=110.50 Aligned_cols=293 Identities=13% Similarity=0.142 Sum_probs=230.5
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHH
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVG 256 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 256 (494)
.++|+++|-+|.+.... +..+.-+|.+.|...|.++.|.++...+.+.... ....-......|..-
T Consensus 51 ~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdl-------------T~~qr~lAl~qL~~D 116 (389)
T COG2956 51 PDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDL-------------TFEQRLLALQQLGRD 116 (389)
T ss_pred cchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCC-------------chHHHHHHHHHHHHH
Confidence 78999999999985433 5677778999999999999999999998764331 011224456677888
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----hHHHHHHHHHHccCC
Q 011081 257 FYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDV----VAYNTIIGGFCEIGE 332 (494)
Q Consensus 257 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~ 332 (494)
|...|-++.|+.+|..+.+.| .--......|+..|-...+|++|+++-.++.+.|-.+.. ..|.-+...+....+
T Consensus 117 ym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999865 334567788999999999999999999999887644432 246667777778889
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 333 MARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKA 412 (494)
Q Consensus 333 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 412 (494)
.+.|..++.+..+.+ +..+..-..+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+.+
T Consensus 196 ~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 196 VDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999998875 4555555667788999999999999999999987666677888999999999999999999997
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHccc
Q 011081 413 RVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMK---EGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 413 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~ 489 (494)
.+... +....-..+...-....-.+.|..++.+-+.. +|+...+..||+.... .|...+-..+++.|....+
T Consensus 275 ~~~~~---~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l 349 (389)
T COG2956 275 AMETN---TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL 349 (389)
T ss_pred HHHcc---CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence 77653 44444455555555555667777777776654 8999999999997643 3567778888888887655
Q ss_pred c
Q 011081 490 R 490 (494)
Q Consensus 490 ~ 490 (494)
+
T Consensus 350 ~ 350 (389)
T COG2956 350 R 350 (389)
T ss_pred h
Confidence 4
No 26
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.62 E-value=4.5e-12 Score=122.71 Aligned_cols=292 Identities=8% Similarity=-0.030 Sum_probs=214.7
Q ss_pred hcCChhcHHHHHHHHHHHHhCCCCcCh-HhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHH
Q 011081 170 EVKNIEKIETCVDIVRMLMSRGLSVKV-STCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVH 248 (494)
Q Consensus 170 ~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 248 (494)
..|+ ++.|.+.+....+.. |+. ..+-....++...|+.+.|.+.+.++.+..+. +...
T Consensus 96 ~~g~---~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~----------------~~l~ 154 (409)
T TIGR00540 96 AEGD---YAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGN----------------DNIL 154 (409)
T ss_pred hCCC---HHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc----------------CchH
Confidence 4577 999999998877754 443 33445567788889999999999998654321 1223
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHH-HHHHHHH
Q 011081 249 TFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAY-NTIIGGF 327 (494)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-~~li~~~ 327 (494)
..-.....+.+.|+++.|...++.+.+.. +-+...+..+...+...|++++|.+.+..+.+.+.. +...+ ..-..++
T Consensus 155 ~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~ 232 (409)
T TIGR00540 155 VEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE 232 (409)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 33445788889999999999999999885 446678889999999999999999999999998744 33333 2122222
Q ss_pred ---HccCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh---HHHHHHHHH
Q 011081 328 ---CEIGEMARAEEFFREMGLSGV---ESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGST---IEVLIGELC 398 (494)
Q Consensus 328 ---~~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~ 398 (494)
...+..+++.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+.. ||... .........
T Consensus 233 ~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l 310 (409)
T TIGR00540 233 IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRL 310 (409)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhc
Confidence 333333444445555554421 2478889999999999999999999999999874 34332 122222234
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011081 399 DKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMAT 478 (494)
Q Consensus 399 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 478 (494)
..++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.
T Consensus 311 ~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~ 390 (409)
T TIGR00540 311 KPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAA 390 (409)
T ss_pred CCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 45788889999987777765444435667889999999999999999995444355899999999999999999999999
Q ss_pred HHHHHHHH
Q 011081 479 MLRKEMFE 486 (494)
Q Consensus 479 ~~~~~m~~ 486 (494)
+++++...
T Consensus 391 ~~~~~~l~ 398 (409)
T TIGR00540 391 AMRQDSLG 398 (409)
T ss_pred HHHHHHHH
Confidence 99998654
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.62 E-value=2.1e-11 Score=127.87 Aligned_cols=352 Identities=9% Similarity=-0.038 Sum_probs=243.9
Q ss_pred CHhHHHHHHHHHHHCCChhHHHHHHHHHHcC-CCCCChHHHHHHHHHHhhhcCCChhhHH---HHH------HHHHhcCC
Q 011081 104 SLSSYATIIHILSRARLIGPARDVIRVALRS-PENDPKLKLFEVLVKTYRECGSAPFVFD---LLI------KCCLEVKN 173 (494)
Q Consensus 104 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~li------~~~~~~~~ 173 (494)
+....-.+--...+.|+.++|..++++.... +....+..+...++..|...+. ..+.. .|+ .-|.-.|+
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~ 453 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPY-LATPAKVAILSKPLPLAEQRQWQSQ 453 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCc-ccchHHHHHhccccccchhHHHHhh
Confidence 3444444445566788999999999998873 3233345666677777765432 11111 110 01333454
Q ss_pred hhcHHHHH---HHHHHHHhCCCCc--ChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHH
Q 011081 174 IEKIETCV---DIVRMLMSRGLSV--KVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVH 248 (494)
Q Consensus 174 ~~~~~~a~---~~~~~m~~~g~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 248 (494)
..++. +.+....... ++ +...|..+..++.. ++.++|...|.+.... .|+..
T Consensus 454 ---~~~~~~~~~~~~~al~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~------------------~Pd~~ 510 (987)
T PRK09782 454 ---LPGIADNCPAIVRLLGDM-SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR------------------QPDAW 510 (987)
T ss_pred ---hhhhhhhHHHHHHhcccC-CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh------------------CCchH
Confidence 43333 3333333321 23 56677778877776 7888899988887654 34544
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 011081 249 TFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFC 328 (494)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 328 (494)
....+...+.+.|++++|...|+++... .|+...+..+..++.+.|++++|...++...+.+ +.+...+..+.....
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~ 587 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHH
Confidence 4444455556889999999999987654 4555566777788889999999999999988764 233333444444455
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011081 329 EIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALD 408 (494)
Q Consensus 329 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 408 (494)
+.|++++|...|++..+. .|+...|..+...+.+.|+.++|+..|++.++.. +.+...++.+...+...|+.++|++
T Consensus 588 ~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 588 IPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred hCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 669999999999998876 4678888889999999999999999999988875 3356677777788899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011081 409 ILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS-LEIYSAFIDGYMKEGNVEMATMLRKEMFEN 487 (494)
Q Consensus 409 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 487 (494)
.+++.+.... -+...+..+..++...|++++|...+++..+. .|+ ..+.-.......+..+++.|.+-+++....
T Consensus 665 ~l~~AL~l~P--~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 665 MLERAHKGLP--DDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred HHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 9987776542 34567788888999999999999999999864 555 355555566666777788888877776654
Q ss_pred cc
Q 011081 488 QV 489 (494)
Q Consensus 488 ~~ 489 (494)
++
T Consensus 741 ~~ 742 (987)
T PRK09782 741 SF 742 (987)
T ss_pred Cc
Confidence 43
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.61 E-value=7.8e-11 Score=123.62 Aligned_cols=232 Identities=9% Similarity=0.063 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
+...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...|+.+... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 34444444444444 4455555544444433 233332222233334455555555555554333 233333444444
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 011081 326 GFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFE 405 (494)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 405 (494)
.+.+.|++++|...|++..+.+ +.+...+..+...+...|++++|...+++.++.. |+...+..+...+.+.|+.++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHH
Confidence 5555555555555555554432 2222222222223333455555555555554432 334445555555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 406 ALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMF 485 (494)
Q Consensus 406 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 485 (494)
|+..+++.+... +-+...++.+..++...|+.++|++.+++..+.. +-+...+..+..++...|++++|+..+++.+
T Consensus 628 A~~~l~~AL~l~--Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 628 AVSDLRAALELE--PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555443332 1223344444445555555555555555555431 1234445555555555555555555555555
Q ss_pred Hcc
Q 011081 486 ENQ 488 (494)
Q Consensus 486 ~~~ 488 (494)
+..
T Consensus 705 ~l~ 707 (987)
T PRK09782 705 DDI 707 (987)
T ss_pred hcC
Confidence 443
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=7.9e-15 Score=134.86 Aligned_cols=263 Identities=16% Similarity=0.151 Sum_probs=104.2
Q ss_pred HHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc
Q 011081 201 ALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEP 280 (494)
Q Consensus 201 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 280 (494)
.+...+.+.|++++|++++++....... .-|...|..+...+...+++++|++.++++...+..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~---------------~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~- 76 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAP---------------PDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA- 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccc---------------cccccccccccccccccccccccccccccccccccc-
Confidence 4567777888999999888654332200 125566666667777788899999999988876522
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHH
Q 011081 281 DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSG-VESSSVTFEHLV 359 (494)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li 359 (494)
+...+..++.. ...+++++|.+++....+. .++...+..++..+.+.++++++.++++.+.... .+.+...|..+.
T Consensus 77 ~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a 153 (280)
T PF13429_consen 77 NPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALA 153 (280)
T ss_dssp --------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHH
T ss_pred ccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 55567777766 6888899998888777655 3566777888888888999999999988876542 345777888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 011081 360 NGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKM 439 (494)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 439 (494)
..+.+.|+.++|++.+++.++.. +-|......++..+...|+.+++.+++....... +.|...+..+..+|...|+.
T Consensus 154 ~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~ 230 (280)
T PF13429_consen 154 EIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRY 230 (280)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-H
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccc
Confidence 88899999999999999988874 2256677888888888899888777777544433 34455677888889999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 440 EEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFE 486 (494)
Q Consensus 440 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 486 (494)
++|..+|++..+.. +.|..+...+.+++...|+.++|.++.++..+
T Consensus 231 ~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 231 EEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 99999999988752 44788888888899999999999988877654
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=3.7e-11 Score=115.70 Aligned_cols=285 Identities=9% Similarity=0.017 Sum_probs=216.9
Q ss_pred cCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHH
Q 011081 171 VKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTF 250 (494)
Q Consensus 171 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 250 (494)
.|+ ++.|.+.+....+..-.| ...|.....+..+.|+.+.|.+.+.++.+.. |+....
T Consensus 97 eGd---~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~------------------~~~~~~ 154 (398)
T PRK10747 97 EGD---YQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELA------------------DNDQLP 154 (398)
T ss_pred CCC---HHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------------------CcchHH
Confidence 478 999998877765543222 2223333445578899999999999997654 343222
Q ss_pred H--HHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------hHHH
Q 011081 251 N--ALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDV-------VAYN 321 (494)
Q Consensus 251 ~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~ 321 (494)
. .....+...|++++|...++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|.
T Consensus 155 ~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~ 233 (398)
T PRK10747 155 VEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWI 233 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 2 33678889999999999999998875 446778889999999999999999999999988644322 2334
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 011081 322 TIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKR 401 (494)
Q Consensus 322 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 401 (494)
.++.......+.+...++++.+... .+.+......+...+...|+.++|.+++++..+. .||... .++.+....+
T Consensus 234 ~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~ 308 (398)
T PRK10747 234 GLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTN 308 (398)
T ss_pred HHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCC
Confidence 4444444555666777777776443 2567888899999999999999999999999884 444422 2334445669
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011081 402 RVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLR 481 (494)
Q Consensus 402 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 481 (494)
+.+++++..++..++.. -|...+.++...|.+.|++++|.+.|+...+. .|+..+|..+...+.+.|+.++|.+++
T Consensus 309 ~~~~al~~~e~~lk~~P--~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~ 384 (398)
T PRK10747 309 NPEQLEKVLRQQIKQHG--DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMR 384 (398)
T ss_pred ChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999987776653 34556788899999999999999999999964 899999999999999999999999999
Q ss_pred HHHHHc
Q 011081 482 KEMFEN 487 (494)
Q Consensus 482 ~~m~~~ 487 (494)
++-...
T Consensus 385 ~~~l~~ 390 (398)
T PRK10747 385 RDGLML 390 (398)
T ss_pred HHHHhh
Confidence 987653
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=1.7e-11 Score=118.10 Aligned_cols=285 Identities=11% Similarity=0.061 Sum_probs=217.1
Q ss_pred CCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHH-HHHHHHhcCChhcHHHHHHHHHHHHhCCCCcCh
Q 011081 118 ARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDL-LIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKV 196 (494)
Q Consensus 118 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 196 (494)
.|+++.|...+....+. .+.+..+-. ...+..+.|+ .+.|.+.+.++.+.......
T Consensus 97 eGd~~~A~k~l~~~~~~--------------------~~~p~l~~llaA~aA~~~g~---~~~A~~~l~~A~~~~~~~~~ 153 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH--------------------AEQPVVNYLLAAEAAQQRGD---EARANQHLERAAELADNDQL 153 (398)
T ss_pred CCCHHHHHHHHHHHHhc--------------------ccchHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCcchH
Confidence 48888888666654331 222333333 3444578898 99999999999874333222
Q ss_pred HhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 011081 197 STCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARL 276 (494)
Q Consensus 197 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 276 (494)
.........+...|+++.|.+.++++.+..|. +......+...|.+.|++++|.+++..+.+.
T Consensus 154 ~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-----------------~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~ 216 (398)
T PRK10747 154 PVEITRVRIQLARNENHAARHGVDKLLEVAPR-----------------HPEVLRLAEQAYIRTGAWSSLLDILPSMAKA 216 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----------------CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc
Confidence 22223467888999999999999999887655 7788999999999999999999999999988
Q ss_pred CCCcCH-------hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 011081 277 GCEPDC-------YSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVE 349 (494)
Q Consensus 277 g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 349 (494)
+..++. .+|..++....+..+.+...++++.+.+. .+.+......+...+...|+.++|.+++++..+. .
T Consensus 217 ~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~ 293 (398)
T PRK10747 217 HVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--Q 293 (398)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C
Confidence 654322 23444455455556667777777776443 2457888999999999999999999999999874 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011081 350 SSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFL 429 (494)
Q Consensus 350 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 429 (494)
++... .++.+....++.+++++..+...+.. +-|...+..+...+.+.+++++|.+.|+..+.. .|+...|..+
T Consensus 294 ~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~---~P~~~~~~~L 367 (398)
T PRK10747 294 YDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ---RPDAYDYAWL 367 (398)
T ss_pred CCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHHHHH
Confidence 55532 23444556699999999999998874 335667888899999999999999999976654 5999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 011081 430 IKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~ 451 (494)
..++.+.|+.++|.+++++-..
T Consensus 368 a~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 368 ADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999998764
No 32
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=4.2e-11 Score=104.30 Aligned_cols=307 Identities=16% Similarity=0.140 Sum_probs=197.4
Q ss_pred CCCChhHHHHHHHhhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHH
Q 011081 67 SGLTPTQFSQIALGLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEV 146 (494)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 146 (494)
+.++.+.|..+-+.+.++|+.|...|..+.... +-+..+--++-+.+.+.|..+.|+.++..+.++++...
T Consensus 33 ~~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~------- 103 (389)
T COG2956 33 NRLSRDYVKGLNFLLSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTF------- 103 (389)
T ss_pred hhccHHHHhHHHHHhhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCch-------
Confidence 446777777777888888888888888876432 33444555666777777777777777777766542110
Q ss_pred HHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCC
Q 011081 147 LVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLD 226 (494)
Q Consensus 147 l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 226 (494)
-++ ..+...|..-|...|-++.|.++|..+.+.+
T Consensus 104 ------------------------------~qr----------------~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ 137 (389)
T COG2956 104 ------------------------------EQR----------------LLALQQLGRDYMAAGLLDRAEDIFNQLVDEG 137 (389)
T ss_pred ------------------------------HHH----------------HHHHHHHHHHHHHhhhhhHHHHHHHHHhcch
Confidence 011 1112234445556666677777777665432
Q ss_pred cccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH----hHHHHHHHHHHhcCCHHHHH
Q 011081 227 SDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDC----YSYSVLMAVFCEERRMREAE 302 (494)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~ 302 (494)
. --......|+..|-+..+|++|+++-+++.+.+-.+.. ..|.-|...+....+.+.|.
T Consensus 138 e-----------------fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 138 E-----------------FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred h-----------------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 1 13445566777777777777777777777665433322 23555556666667788888
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011081 303 KLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 303 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 382 (494)
.++.+..+.+ +.++.+--.+.+.+...|+++.|++.++...+.+..--..+...|..+|...|+.++....+..+.+..
T Consensus 201 ~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 201 ELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 8888877764 223444445667778888888888888888877655555667778888888888888888888887753
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh
Q 011081 383 FEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCE---EGKMEEALKVQAEMVG 451 (494)
Q Consensus 383 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~ 451 (494)
. ....-..+..........+.|..++.+.+.. +|+...+..+|..-.. .|...+-..++..|..
T Consensus 280 ~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 280 T--GADAELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred C--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 3 3333444444445555666676666655655 4888888888876543 3445556666666664
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.57 E-value=3e-14 Score=131.05 Aligned_cols=262 Identities=13% Similarity=0.105 Sum_probs=113.8
Q ss_pred HHHHHHHhcCChhcHHHHHHHHHHHHhCC-CCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccccc
Q 011081 163 LLIKCCLEVKNIEKIETCVDIVRMLMSRG-LSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVV 241 (494)
Q Consensus 163 ~li~~~~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (494)
.+-..+.+.|+ +++|+++++...... ..-+...|..+.......++.+.|.+.++++...++.
T Consensus 13 ~~A~~~~~~~~---~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~------------- 76 (280)
T PF13429_consen 13 RLARLLYQRGD---YEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA------------- 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccc-------------
Confidence 34566778888 999999996654433 2335566666666777789999999999999776542
Q ss_pred ccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhHH
Q 011081 242 RVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKN-VEHDVVAY 320 (494)
Q Consensus 242 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~ 320 (494)
+...+..++.. ...+++++|.+++....+. .++...+..++..+.+.++++++..+++.+.... .+.+...|
T Consensus 77 ----~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 149 (280)
T PF13429_consen 77 ----NPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFW 149 (280)
T ss_dssp ------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHH
T ss_pred ----ccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHH
Confidence 45567777776 7899999999999887665 3566778889999999999999999999987542 35678889
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 011081 321 NTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDK 400 (494)
Q Consensus 321 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 400 (494)
..+...+.+.|+.++|++.|++..+.. +-|....+.++..+...|+.+++.++++...+.. +.|...+..+..++...
T Consensus 150 ~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~l 227 (280)
T PF13429_consen 150 LALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQL 227 (280)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccc
Confidence 999999999999999999999999874 4467888899999999999999999998887764 45667788899999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 401 RRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 401 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (494)
|+.++|+..|++..... +.|..+...+..++...|+.++|.++..+..+
T Consensus 228 g~~~~Al~~~~~~~~~~--p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 228 GRYEEALEYLEKALKLN--PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccc--cccccccccccccccccccccccccccccccc
Confidence 99999999999877654 34777888999999999999999999887754
No 34
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=2e-12 Score=122.91 Aligned_cols=290 Identities=12% Similarity=0.036 Sum_probs=215.8
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHH
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVG 256 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 256 (494)
.++|+..|...... +.-+..+...+..+|...+++++|.++|+.+....+. ..-+...|.+.+-.
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~--------------rv~~meiyST~LWH 399 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY--------------RVKGMEIYSTTLWH 399 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--------------cccchhHHHHHHHH
Confidence 67888888885543 2223466777889999999999999999999877664 23367778887765
Q ss_pred HHhcCCHhHHHHHH-HHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHH
Q 011081 257 FYREGAFEKVEDVW-VEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMAR 335 (494)
Q Consensus 257 ~~~~g~~~~a~~~~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 335 (494)
+-+.- ++.++ +++.+.. +-...+|.++.+.|.-+++.+.|++.|++..+.+ +....+|+.+..=+.....+|.
T Consensus 400 Lq~~v----~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~ 473 (638)
T KOG1126|consen 400 LQDEV----ALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDK 473 (638)
T ss_pred HHhhH----HHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHh
Confidence 43322 22222 2222222 3356799999999999999999999999998874 3377888888888888999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 336 AEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVV 415 (494)
Q Consensus 336 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 415 (494)
|...|+..+... +.+-..|.-+...|.+.++++.|+-.|+...+.+ +-+.+....+...+.+.|+.++|++++++++.
T Consensus 474 a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 474 AMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred HHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 999999887432 2233344456778899999999999999988765 33666677777888899999999999997765
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccccccC
Q 011081 416 KFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS-LEIYSAFIDGYMKEGNVEMATMLRKEMFENQVRQED 493 (494)
Q Consensus 416 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~pd~ 493 (494)
-... |+..--..+..+...+++++|++.++++++. .|+ ..+|..+...|.+.|+.+.|+.-|--+.+.++++.+
T Consensus 552 ld~k--n~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 552 LDPK--NPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred cCCC--CchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 5432 3333333455667789999999999999864 554 667777888999999999999999999888887653
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=4.1e-11 Score=116.04 Aligned_cols=300 Identities=10% Similarity=0.035 Sum_probs=213.5
Q ss_pred HHHHHHHHHH--HCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChh-hHHHHHHHHHhcCChhcHHHHHHH
Q 011081 107 SYATIIHILS--RARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPF-VFDLLIKCCLEVKNIEKIETCVDI 183 (494)
Q Consensus 107 ~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~li~~~~~~~~~~~~~~a~~~ 183 (494)
.+..+.+++. ..|+++.|.+.+....+. .+++. .+-....+..+.|+ .+.|.+.
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~--------------------~~~~~~~~llaA~aa~~~g~---~~~A~~~ 140 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADH--------------------AAEPVLNLIKAAEAAQQRGD---EARANQH 140 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--------------------CCCCHHHHHHHHHHHHHCCC---HHHHHHH
Confidence 3445555554 358898888888765542 23332 23344566778899 9999999
Q ss_pred HHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCH
Q 011081 184 VRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAF 263 (494)
Q Consensus 184 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 263 (494)
+.+..+....+.....-.....+...|+++.|.+.++.+.+..|. +...+..+...+.+.|++
T Consensus 141 l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~-----------------~~~~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 141 LEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPR-----------------HKEVLKLAEEAYIRSGAW 203 (409)
T ss_pred HHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHHHhhH
Confidence 999877543333334444577888899999999999999887654 677889999999999999
Q ss_pred hHHHHHHHHHHHcCCCcCHhHHH-HHHHHH---HhcCCHHHHHHHHHHHHhCCC---CCCHhHHHHHHHHHHccCCHHHH
Q 011081 264 EKVEDVWVEMARLGCEPDCYSYS-VLMAVF---CEERRMREAEKLWEEMRDKNV---EHDVVAYNTIIGGFCEIGEMARA 336 (494)
Q Consensus 264 ~~a~~~~~~m~~~g~~p~~~~~~-~li~~~---~~~g~~~~a~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~A 336 (494)
++|.+++..+.+.++. +...+. .-..++ ...+..+.+.+.+..+.+... +.+...+..+...+...|+.++|
T Consensus 204 ~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A 282 (409)
T TIGR00540 204 QALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSA 282 (409)
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHH
Confidence 9999999999998744 333332 111222 233333333445555544321 23788999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHH
Q 011081 337 EEFFREMGLSGVESSSVT---FEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEG--STIEVLIGELCDKRRVFEALDILK 411 (494)
Q Consensus 337 ~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~ 411 (494)
.+++++..+.. ||... ...........++.+.+.+.++...+.. +-|. ....++...+.+.|++++|.+.|+
T Consensus 283 ~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 283 QEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 99999999863 33331 1222222334578888999998887763 2233 456688889999999999999998
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 412 ARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 412 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (494)
. .......|+...+..+...+.+.|+.++|.+++++...
T Consensus 360 ~-a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 360 N-VAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred H-hHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 22233469999999999999999999999999998653
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.51 E-value=3e-10 Score=111.87 Aligned_cols=331 Identities=13% Similarity=0.083 Sum_probs=244.8
Q ss_pred HHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCC
Q 011081 112 IHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRG 191 (494)
Q Consensus 112 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g 191 (494)
...+...|++++|..++.++++. ...++..|-+|...|...|+ .+++...+-..--..
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkq-------------------dp~~~~ay~tL~~IyEqrGd---~eK~l~~~llAAHL~ 203 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQ-------------------DPRNPIAYYTLGEIYEQRGD---IEKALNFWLLAAHLN 203 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh-------------------CccchhhHHHHHHHHHHccc---HHHHHHHHHHHHhcC
Confidence 33444449999999999998873 34567889999999999999 888888765554443
Q ss_pred CCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 011081 192 LSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWV 271 (494)
Q Consensus 192 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 271 (494)
.+ |...|-.+.....+.|.++.|.-.|.++++.+|. +....---+..|-+.|+...|.+-|.
T Consensus 204 p~-d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~-----------------n~~~~~ers~L~~~~G~~~~Am~~f~ 265 (895)
T KOG2076|consen 204 PK-DYELWKRLADLSEQLGNINQARYCYSRAIQANPS-----------------NWELIYERSSLYQKTGDLKRAMETFL 265 (895)
T ss_pred CC-ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-----------------chHHHHHHHHHHHHhChHHHHHHHHH
Confidence 33 6688989998999999999999999999887653 55555566778889999999999999
Q ss_pred HHHHcCCCcCHhHH----HHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011081 272 EMARLGCEPDCYSY----SVLMAVFCEERRMREAEKLWEEMRDK-NVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 272 ~m~~~g~~p~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
++....-+.|..-+ -.+++.+...++-+.|.+.++..... +-..+...++.++..|.+...++.|.....++...
T Consensus 266 ~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r 345 (895)
T KOG2076|consen 266 QLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNR 345 (895)
T ss_pred HHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhcc
Confidence 99876422222222 33455666677778888888877652 22446677889999999999999999988888762
Q ss_pred CCCCCHHHH--------------------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHH
Q 011081 347 GVESSSVTF--------------------------EHLVNGYCRAGDVDSAILVYNDMCRKGFEP--EGSTIEVLIGELC 398 (494)
Q Consensus 347 ~~~~~~~~~--------------------------~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~ 398 (494)
...+|..-| -.+.-++......+....+...+.+..+.| +...|.-+..+|.
T Consensus 346 ~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~ 425 (895)
T KOG2076|consen 346 ESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALT 425 (895)
T ss_pred ccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHH
Confidence 222222111 123334455555556666666666666433 5667888999999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 011081 399 DKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS-LEIYSAFIDGYMKEGNVEMA 477 (494)
Q Consensus 399 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a 477 (494)
..|++.+|+.+|.... ....--+...|-.+..+|...|..++|.+.|+..+.. .|+ ...--+|-..+.+.|+.++|
T Consensus 426 ~~~~~~~Al~~l~~i~-~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~Eka 502 (895)
T KOG2076|consen 426 NIGKYKEALRLLSPIT-NREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKA 502 (895)
T ss_pred hcccHHHHHHHHHHHh-cCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHH
Confidence 9999999999998544 4333445778889999999999999999999999965 444 55556677778899999999
Q ss_pred HHHHHHHH
Q 011081 478 TMLRKEMF 485 (494)
Q Consensus 478 ~~~~~~m~ 485 (494)
.+.++.+.
T Consensus 503 lEtL~~~~ 510 (895)
T KOG2076|consen 503 LETLEQII 510 (895)
T ss_pred HHHHhccc
Confidence 99999887
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=4.7e-11 Score=108.87 Aligned_cols=259 Identities=12% Similarity=0.045 Sum_probs=140.9
Q ss_pred HHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccccccc
Q 011081 164 LIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRV 243 (494)
Q Consensus 164 li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (494)
+..++-.... .+++++-.......|+.-+...-+....+.-...+++.|..+|+++.+.+|..
T Consensus 233 ~~~a~~el~q---~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYR-------------- 295 (559)
T KOG1155|consen 233 LKKAYQELHQ---HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYR-------------- 295 (559)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc--------------
Confidence 3445555555 88888888888888887666666666667778899999999999999887751
Q ss_pred ccCHHHHHHHHHHHHhcCCHhH---HHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHH
Q 011081 244 RPNVHTFNALMVGFYREGAFEK---VEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAY 320 (494)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 320 (494)
--|..+|..++-. +..+-.- |..++. -.... ..|...+.+-|+-.++.++|...|++..+.+ +.....|
T Consensus 296 l~dmdlySN~LYv--~~~~skLs~LA~~v~~---idKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aW 367 (559)
T KOG1155|consen 296 LDDMDLYSNVLYV--KNDKSKLSYLAQNVSN---IDKYR--PETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAW 367 (559)
T ss_pred chhHHHHhHHHHH--HhhhHHHHHHHHHHHH---hccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHH
Confidence 1244455444322 1111111 111110 11111 2344444555555555555555555555543 2234455
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 011081 321 NTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDK 400 (494)
Q Consensus 321 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 400 (494)
+.+..-|....+...|.+-|+...+-+ +.|-..|-.|.++|.-.+...=|+-.|++..+-. +-|...|.+|...|.+.
T Consensus 368 TLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl 445 (559)
T KOG1155|consen 368 TLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKL 445 (559)
T ss_pred HHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHh
Confidence 555555555555555555555555443 4455555555555555555555555555554432 22445555555555555
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 401 RRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 401 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (494)
++.++|++.|.+.+.-.. .+...|..|.+.|-+.++.++|...|.+-++
T Consensus 446 ~~~~eAiKCykrai~~~d--te~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 446 NRLEEAIKCYKRAILLGD--TEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred ccHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 555555555554333221 1334455555555555555555555554443
No 38
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.51 E-value=5.8e-10 Score=109.87 Aligned_cols=369 Identities=12% Similarity=0.061 Sum_probs=261.0
Q ss_pred hhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChh
Q 011081 80 GLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPF 159 (494)
Q Consensus 80 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (494)
..+|+.+.|.+++..+.++. +-....|-.+...+-..|+.+.+...+-.+.... ..+..
T Consensus 150 farg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-------------------p~d~e 208 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-------------------PKDYE 208 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-------------------CCChH
Confidence 34589999999999998776 4567889999999999999999877665544322 22334
Q ss_pred hHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccc
Q 011081 160 VFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKR 239 (494)
Q Consensus 160 ~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 239 (494)
.|..+-....+.|. +++|.-.|.+.++.... +...+---...|-+.|+...|.+-|.++....|.
T Consensus 209 ~W~~ladls~~~~~---i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~----------- 273 (895)
T KOG2076|consen 209 LWKRLADLSEQLGN---INQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP----------- 273 (895)
T ss_pred HHHHHHHHHHhccc---HHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc-----------
Confidence 55555666677788 99999999999987543 5555555667899999999999999999876542
Q ss_pred ccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-CCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------
Q 011081 240 VVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARL-GCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKN------ 312 (494)
Q Consensus 240 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g------ 312 (494)
..+......--.++..|...++-+.|.+.++..... +-..+...++.++..+.+...++.|......+....
T Consensus 274 -~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~ 352 (895)
T KOG2076|consen 274 -VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDS 352 (895)
T ss_pred -hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChh
Confidence 001112222334456677777778888888877663 223455678889999999999999988888776621
Q ss_pred ---------------------CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHH
Q 011081 313 ---------------------VEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSG--VESSSVTFEHLVNGYCRAGDVD 369 (494)
Q Consensus 313 ---------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~ 369 (494)
+.++..++ -++-++......+....+..-+.+.. +.-+...|.-+..+|...|++.
T Consensus 353 e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~ 431 (895)
T KOG2076|consen 353 EWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYK 431 (895)
T ss_pred hhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHH
Confidence 12222221 12233334444444444444444444 3345677888999999999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 370 SAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEM 449 (494)
Q Consensus 370 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (494)
+|+.+|..+......-+...|..+..+|-..|..++|.+.|+..+.......| .--.|...+-+.|+.++|.+.+..+
T Consensus 432 ~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D--~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 432 EALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLD--ARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchh--hhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 99999999988765566778999999999999999999999977765433233 3345667788999999999999986
Q ss_pred H--------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc
Q 011081 450 V--------GKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQ 488 (494)
Q Consensus 450 ~--------~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 488 (494)
. ..+..|+........+.+...|+.++-......|+...
T Consensus 510 ~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~ 556 (895)
T KOG2076|consen 510 INPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDF 556 (895)
T ss_pred cCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4 22345556666667778888899888777777666543
No 39
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.49 E-value=8.1e-10 Score=99.39 Aligned_cols=291 Identities=9% Similarity=0.043 Sum_probs=234.0
Q ss_pred cCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHH
Q 011081 171 VKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTF 250 (494)
Q Consensus 171 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 250 (494)
.|+ +..|..+..+-.+.+-. ....|..-..+-...|+.+.+-..+.++-+..+ .++....
T Consensus 97 eG~---~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~----------------~~~l~v~ 156 (400)
T COG3071 97 EGD---FQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG----------------DDTLAVE 156 (400)
T ss_pred cCc---HHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC----------------CchHHHH
Confidence 467 99999999988877755 345566667778889999999999999977532 3466677
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------hHHHHH
Q 011081 251 NALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDV-------VAYNTI 323 (494)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~l 323 (494)
-+........|+++.|..-++++.+.+ +-+.........+|.+.|++.....+...|.+.|.-.+. .+|+.+
T Consensus 157 ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 157 LTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 778888899999999999999999886 556778888999999999999999999999998865554 357777
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 011081 324 IGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRV 403 (494)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 403 (494)
++=....+..+.-...+++.... .+.++..-.+++.-+.+.|+.++|.++.++..+++..|. -...-.+.+-++.
T Consensus 236 L~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~ 310 (400)
T COG3071 236 LQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDP 310 (400)
T ss_pred HHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCc
Confidence 77666666666655666665443 355666777888899999999999999999999887766 2223345677888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 404 FEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKE 483 (494)
Q Consensus 404 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 483 (494)
..-++..+...+..+..| ..+.+|...|.+.+.+.+|...|+...+ ..|+..+|+.+.+++.+.|+..+|.++.++
T Consensus 311 ~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 311 EPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred hHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 888888888888887766 5678899999999999999999998874 589999999999999999999999999988
Q ss_pred HHHccccc
Q 011081 484 MFENQVRQ 491 (494)
Q Consensus 484 m~~~~~~p 491 (494)
..-.-..|
T Consensus 387 ~L~~~~~~ 394 (400)
T COG3071 387 ALLLTRQP 394 (400)
T ss_pred HHHHhcCC
Confidence 77544333
No 40
>PRK12370 invasion protein regulator; Provisional
Probab=99.47 E-value=1.6e-10 Score=116.36 Aligned_cols=269 Identities=10% Similarity=-0.006 Sum_probs=185.2
Q ss_pred ChhhHHHHHHHHHh--cCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHH---------cCCChhHHHHHHHHHhcC
Q 011081 157 APFVFDLLIKCCLE--VKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVS---------RGKGVISGYEIYREVFGL 225 (494)
Q Consensus 157 ~~~~~~~li~~~~~--~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~ 225 (494)
+...|...+++-.. ....+..++|++.|++..+.... +...|..+..++. ..+++++|...++++.+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 34555566655322 22223478999999999885433 4555655555443 234478999999999887
Q ss_pred CcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHH
Q 011081 226 DSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLW 305 (494)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 305 (494)
+|. +..+|..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+
T Consensus 334 dP~-----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 334 DHN-----------------NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred CCC-----------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 765 78888888889999999999999999998875 445667888889999999999999999
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011081 306 EEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEP 385 (494)
Q Consensus 306 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 385 (494)
++..+.... +...+..++..+...|++++|...++++.....+-+...+..+...+...|+.++|...+.++... .|
T Consensus 396 ~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~ 472 (553)
T PRK12370 396 NECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EI 472 (553)
T ss_pred HHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cc
Confidence 999887422 233344455556778999999999999876542224555777888888999999999999887654 33
Q ss_pred C-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 386 E-GSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 386 ~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
+ ....+.+...|+..| ++|...++...+.....+....+.. ..|.-.|+-+.+..+ +++.+.
T Consensus 473 ~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 473 TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLP--LVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHH--HHHHHHhhhHHHHHH-HHhhcc
Confidence 3 333445555666666 4777766654444433343333333 334455666666655 777654
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=7.3e-11 Score=112.54 Aligned_cols=261 Identities=15% Similarity=0.140 Sum_probs=210.2
Q ss_pred hhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCC--cChHhHHHHHHHHHcCCChhHHHHHH-HHHhcCCcccccccc
Q 011081 158 PFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLS--VKVSTCNALIWEVSRGKGVISGYEIY-REVFGLDSDATAGIG 234 (494)
Q Consensus 158 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~ 234 (494)
.++..-+.++|...++ +++|..+|+.+.+...- -+...|.+.++-+.+. -++..+ +.+.+.++.
T Consensus 353 ~wvl~q~GrayFEl~~---Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~Laq~Li~~~~~------ 419 (638)
T KOG1126|consen 353 GWVLSQLGRAYFELIE---YDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYLAQDLIDTDPN------ 419 (638)
T ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHHHHHHHhhCCC------
Confidence 4667778899999999 99999999999875422 2678898888776652 222222 233333332
Q ss_pred cccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011081 235 KDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVE 314 (494)
Q Consensus 235 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 314 (494)
...+|.++.++|.-.++.+.|++.|++..+.. +-...+|+.+.+-+.....+|.|...|+..+..
T Consensus 420 -----------sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--- 484 (638)
T KOG1126|consen 420 -----------SPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--- 484 (638)
T ss_pred -----------CcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC---
Confidence 67999999999999999999999999998763 237889999999999999999999999998854
Q ss_pred CCHhHHH---HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 011081 315 HDVVAYN---TIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIE 391 (494)
Q Consensus 315 ~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 391 (494)
|...|| -+...|.+.++++.|+-.|+...+-+ +.+.+....+...+-+.|+.|+|+++|++....+. -|...-.
T Consensus 485 -~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~ 561 (638)
T KOG1126|consen 485 -DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKY 561 (638)
T ss_pred -CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHH
Confidence 555555 56778999999999999999998876 66788888899999999999999999999988763 3555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 392 VLIGELCDKRRVFEALDILKARVVKFGLFPT-EKSYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 392 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
.....+...++.++|+..++ .+++. .|+ ...|..+...|-+.|+.+.|+.-|.-+.+.
T Consensus 562 ~~~~il~~~~~~~eal~~LE-eLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELE-ELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHhhcchHHHHHHHH-HHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 66677788999999999998 55542 354 456778889999999999999999999865
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=3.8e-10 Score=103.03 Aligned_cols=166 Identities=10% Similarity=0.119 Sum_probs=125.0
Q ss_pred ChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011081 195 KVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMA 274 (494)
Q Consensus 195 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (494)
-+.|+..+.+-|+-.++.++|...|++.++.++. ....|+.|..-|.+..+...|.+-++..+
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-----------------~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-----------------YLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-----------------hhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 3556666677777777788888888888776643 66778888888888888888888888877
Q ss_pred HcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 011081 275 RLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVT 354 (494)
Q Consensus 275 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 354 (494)
+.+ +.|-..|-.|.++|.-.+...-|+-.|++..+.. +-|...|.+|..+|.+.++.++|++.|......| ..+...
T Consensus 392 di~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~ 468 (559)
T KOG1155|consen 392 DIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSA 468 (559)
T ss_pred hcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHH
Confidence 765 5577778888888888888888888888777653 4467778888888888888888888888877765 445677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 355 FEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 355 ~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
+..|...|-+.++.++|.+.|+.-++
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 77788888888888888777766554
No 43
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.45 E-value=4.2e-09 Score=100.29 Aligned_cols=238 Identities=12% Similarity=0.008 Sum_probs=129.6
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
+...|-+-+..-.++.++++|..+|.+.... .|+...|..-++.-.-.+..++|.+++++.++. ++.-...|-.+.+
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQ 693 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhH
Confidence 4444555555555555555555555544432 344444444444444445555555555444443 1112233444444
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 011081 326 GFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFE 405 (494)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 405 (494)
.+-+.++++.|.+.|..-.+. ++-..-.|..|...--+.|++-.|..+++...-.+ +-+...|...|..-.+.|+.+.
T Consensus 694 i~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~ 771 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQ 771 (913)
T ss_pred HHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHH
Confidence 444445555554444433322 12233344444444444444445555554444433 2234444444444444454444
Q ss_pred HHHHHHHHHHhC----------------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011081 406 ALDILKARVVKF----------------------------GLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS 457 (494)
Q Consensus 406 a~~~~~~~~~~~----------------------------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 457 (494)
|..++.+.+.+. .+.-|....-.+...|-...++++|.+.|.+.++. .||
T Consensus 772 a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d 849 (913)
T KOG0495|consen 772 AELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPD 849 (913)
T ss_pred HHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCc
Confidence 444443333221 12345566667777777888999999999999965 444
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 458 -LEIYSAFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 458 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
..+|.-+...+.++|.-++-.++++......+.
T Consensus 850 ~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 850 NGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT 883 (913)
T ss_pred cchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 678888999999999999999999888776554
No 44
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.45 E-value=4.1e-09 Score=104.77 Aligned_cols=322 Identities=15% Similarity=0.069 Sum_probs=142.5
Q ss_pred chhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHH
Q 011081 85 PHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLL 164 (494)
Q Consensus 85 ~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 164 (494)
.+.|.+-|..+.+++ +++.-.+---....-..+++..|..+|..++.... .+.+++ .-.+
T Consensus 146 ~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp----------------~~~aD~--rIgi 205 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINP----------------ACKADV--RIGI 205 (1018)
T ss_pred HHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCc----------------ccCCCc--cchh
Confidence 467888899887665 34433333223333355789999999988665321 111111 1112
Q ss_pred HHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHH---cCCChhHHHHHHHHHhcCCccccccccccccccc
Q 011081 165 IKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVS---RGKGVISGYEIYREVFGLDSDATAGIGKDVKRVV 241 (494)
Q Consensus 165 i~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (494)
-.++.+.|+ .+.|+..|.+..+..+. ++.++..|.-.-. ....+..+..++......++.
T Consensus 206 g~Cf~kl~~---~~~a~~a~~ralqLdp~-~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~------------- 268 (1018)
T KOG2002|consen 206 GHCFWKLGM---SEKALLAFERALQLDPT-CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE------------- 268 (1018)
T ss_pred hhHHHhccc---hhhHHHHHHHHHhcChh-hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC-------------
Confidence 233444455 55555555555443221 2222222211111 112233444444444443332
Q ss_pred ccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC--cCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhH
Q 011081 242 RVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCE--PDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVA 319 (494)
Q Consensus 242 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 319 (494)
|.+..+.|.+.|.-.|++..+..+...+...... .-...|..+.++|-..|++++|..+|.+..+..-..-+..
T Consensus 269 ----nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~ 344 (1018)
T KOG2002|consen 269 ----NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLP 344 (1018)
T ss_pred ----CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccc
Confidence 4444455555555555555555555554443210 0112344455555555555555555555444321111222
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 011081 320 YNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAG----DVDSAILVYNDMCRKGFEPEGSTIEVLIG 395 (494)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 395 (494)
+--+.++|.+.|+++.+...|+...+.. +-+..+...|...|...+ ..++|..++....+.. ..|...|..+..
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laq 422 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQ 422 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHH
Confidence 3334455555555555555555554442 333344444444444332 2344444444443332 223444444444
Q ss_pred HHHhcCCHHHHHHHHHHH---HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 396 ELCDKRRVFEALDILKAR---VVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMV 450 (494)
Q Consensus 396 ~~~~~~~~~~a~~~~~~~---~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (494)
.+....-+.. +.+|... +...+..+.....|.+.......|++++|...|....
T Consensus 423 l~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 423 LLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred HHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHh
Confidence 4333222222 3333221 1222223444445555555555555555555555544
No 45
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=2.3e-10 Score=104.03 Aligned_cols=207 Identities=15% Similarity=0.170 Sum_probs=137.9
Q ss_pred hcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHH
Q 011081 259 REGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEE 338 (494)
Q Consensus 259 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 338 (494)
..|++++|.+.|++.+...-.-....|| +.-.+-+.|++++|+..|-.+... +..+..+...+...|-...+..+|++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 3566777777777766543211122222 223455667777777776655322 12356666667777777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 011081 339 FFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFG 418 (494)
Q Consensus 339 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 418 (494)
++-+.... ++.|+...+.|...|-+.|+-.+|++.+-+--+. ++-+..+...|...|....-+++++.+|++.. -
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa---l 654 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---L 654 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---h
Confidence 77655433 4567777788888888888888888776654433 34567777777777888888888888887433 3
Q ss_pred CCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011081 419 LFPTEKSYMFLIKGLC-EEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGN 473 (494)
Q Consensus 419 ~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 473 (494)
+.|+..-|..+|..|. +.|++++|.++++...+. ++-|.....-|++.+...|.
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 5688888877776554 578888888888887664 67778888888887777764
No 46
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=2.7e-10 Score=103.60 Aligned_cols=264 Identities=12% Similarity=0.093 Sum_probs=191.3
Q ss_pred HHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHHcCCCcCH
Q 011081 204 WEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREG-AFEKVEDVWVEMARLGCEPDC 282 (494)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~ 282 (494)
-.|.+.|+++.|.++++-+.+.+.. ..+...-|..+--|.+.| ++..|..+-+...... .-+.
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk---------------~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~ 490 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNK---------------TASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNA 490 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccch---------------hhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCH
Confidence 3567889999999998888766542 223333333333444444 6888888887776543 3344
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011081 283 YSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGY 362 (494)
Q Consensus 283 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 362 (494)
...+.-.+.....|++++|.+.|.+.+...-......|| +.-.+-..|++++|++.|-++..- +..+......+...|
T Consensus 491 ~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiy 568 (840)
T KOG2003|consen 491 AALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIY 568 (840)
T ss_pred HHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHH
Confidence 444444445566899999999999998764333333343 334567889999999999887543 244667777888889
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011081 363 CRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEA 442 (494)
Q Consensus 363 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 442 (494)
....+..+|++++-+.... ++.|...++.|...|-+.|+-.+|.+.+.+..+ -++-+..+...|...|....-+++|
T Consensus 569 e~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~eka 645 (840)
T KOG2003|consen 569 ELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKA 645 (840)
T ss_pred HHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHH
Confidence 9999999999998887543 455788889999999999999999988764332 2345677888888888888888999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcccc
Q 011081 443 LKVQAEMVGKGFEPSLEIYSAFIDGY-MKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 443 ~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
+.+|++.. -+.|+..-|..+|..| .+.|++++|.++++.....-+.
T Consensus 646 i~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 646 INYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred HHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 99999876 4799999999888755 5669999999999988776443
No 47
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.42 E-value=1.1e-09 Score=108.67 Aligned_cols=385 Identities=10% Similarity=0.073 Sum_probs=246.2
Q ss_pred hccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCC----ChhHHHHHHHHHHc-----------------CCCCCC
Q 011081 81 LKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRAR----LIGPARDVIRVALR-----------------SPENDP 139 (494)
Q Consensus 81 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~~~~-----------------~~~~~~ 139 (494)
..++.+.+...|..+..+. +-+..+-..+-..|+..+ ..+.|..++....+ .+....
T Consensus 354 ~~~dle~s~~~fEkv~k~~--p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~ 431 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQL--PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA 431 (1018)
T ss_pred HhchHHHHHHHHHHHHHhC--cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH
Confidence 3445555655555554332 223344444444444332 33455555444433 222222
Q ss_pred hHHHHHHHHHHhhhcC--CChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhC---CCCcCh------HhHHHHHHHHHc
Q 011081 140 KLKLFEVLVKTYRECG--SAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSR---GLSVKV------STCNALIWEVSR 208 (494)
Q Consensus 140 ~~~~~~~l~~~~~~~~--~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~---g~~~~~------~~~~~ll~~~~~ 208 (494)
.+..+...++.+...+ ..+...|.+.......|. ++.|.+.|...... ...++. .+--.+..++-.
T Consensus 432 sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~---~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~ 508 (1018)
T KOG2002|consen 432 SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGN---IEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEE 508 (1018)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcC---hHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHh
Confidence 3444444443333222 345667777777777777 77777777776554 111222 122223444455
Q ss_pred CCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHH
Q 011081 209 GKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVL 288 (494)
Q Consensus 209 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 288 (494)
.++.+.|.++|..+....|. -+..|--+.......+...+|...++...... ..+...++.+
T Consensus 509 l~~~~~A~e~Yk~Ilkehp~-----------------YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~ 570 (1018)
T KOG2002|consen 509 LHDTEVAEEMYKSILKEHPG-----------------YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLL 570 (1018)
T ss_pred hhhhhHHHHHHHHHHHHCch-----------------hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHH
Confidence 56777777777777654321 23334444433334567888888888877654 4456666667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhHHHHHHHHHHc------------cCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011081 289 MAVFCEERRMREAEKLWEEMRDKN-VEHDVVAYNTIIGGFCE------------IGEMARAEEFFREMGLSGVESSSVTF 355 (494)
Q Consensus 289 i~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~~~~~~~~~~ 355 (494)
...+.+...+..|.+-|....+.- ..+|..+.-+|.+.|.+ .+..++|+++|.+.+... +.|...-
T Consensus 571 G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAA 649 (1018)
T KOG2002|consen 571 GNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAA 649 (1018)
T ss_pred HHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhc
Confidence 778888888888888777765532 12466666666665542 245678999999888876 6677888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011081 356 EHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCE 435 (494)
Q Consensus 356 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 435 (494)
|-+.-.++..|++.+|..+|.++.+... -+..+|..+.++|...|++..|+++|+..+++..-.-+......|..++.+
T Consensus 650 NGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~ 728 (1018)
T KOG2002|consen 650 NGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYE 728 (1018)
T ss_pred cchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 8888889999999999999999988753 355678889999999999999999999999888877788889999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHHHcccc
Q 011081 436 EGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGY------------------MKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 436 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~------------------~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
.|.+.+|.+...........-....||..+-.. ...+..+.|.++|.+|...+.+
T Consensus 729 ~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 729 AGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred hhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999888877553332344555443321 1224567788888888776544
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.42 E-value=2.8e-09 Score=96.02 Aligned_cols=294 Identities=12% Similarity=0.109 Sum_probs=232.6
Q ss_pred HHHHHHHH--CCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCCh-hhHHHHHHHHHhcCChhcHHHHHHHHHH
Q 011081 110 TIIHILSR--ARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAP-FVFDLLIKCCLEVKNIEKIETCVDIVRM 186 (494)
Q Consensus 110 ~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~li~~~~~~~~~~~~~~a~~~~~~ 186 (494)
.+..++.+ .|+|..|+.+.....+.+ ..| ..|-.-..+.-+.|+ .+.+-..+.+
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~--------------------e~p~l~~l~aA~AA~qrgd---~~~an~yL~e 143 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHG--------------------EQPVLAYLLAAEAAQQRGD---EDRANRYLAE 143 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcC--------------------cchHHHHHHHHHHHHhccc---HHHHHHHHHH
Confidence 44555554 488888888877654422 222 334455666777888 9999999999
Q ss_pred HHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHH
Q 011081 187 LMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKV 266 (494)
Q Consensus 187 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 266 (494)
.-+..-+++....-+........|+.+.|..-.+++.+..+. +.........+|.+.|++.+.
T Consensus 144 aae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-----------------~~~vlrLa~r~y~~~g~~~~l 206 (400)
T COG3071 144 AAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR-----------------HPEVLRLALRAYIRLGAWQAL 206 (400)
T ss_pred HhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-----------------ChHHHHHHHHHHHHhccHHHH
Confidence 988755667788888888999999999999999999876643 778889999999999999999
Q ss_pred HHHHHHHHHcCCCcCH-------hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHH
Q 011081 267 EDVWVEMARLGCEPDC-------YSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEF 339 (494)
Q Consensus 267 ~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 339 (494)
..++..|.+.|.-.|. .+|+.+++-....+..+.-...|+..... ...++..-.+++.-+.++|+.++|.++
T Consensus 207 l~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~ 285 (400)
T COG3071 207 LAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEI 285 (400)
T ss_pred HHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHH
Confidence 9999999999866554 36778888777777777777778777543 244677778899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 011081 340 FREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGL 419 (494)
Q Consensus 340 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 419 (494)
.++..+.+..|. -...-.+.+-++.+.-++..+.-.+.. +-+...+..|-..|.+.+.+.+|...|+..++.
T Consensus 286 i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--- 357 (400)
T COG3071 286 IEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--- 357 (400)
T ss_pred HHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc---
Confidence 999998876666 223345667788888777777766543 224477888999999999999999999966544
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 420 FPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 420 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
.|+..+|+.+..++.+.|+.++|.+++++....
T Consensus 358 ~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 358 RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 599999999999999999999999999987744
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=99.42 E-value=1.5e-10 Score=116.43 Aligned_cols=266 Identities=10% Similarity=0.031 Sum_probs=188.4
Q ss_pred ChHhHHHHHHHHHc-----CCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHh---------c
Q 011081 195 KVSTCNALIWEVSR-----GKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYR---------E 260 (494)
Q Consensus 195 ~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~---------~ 260 (494)
+...|...+.+... .+..++|.+.|++..+.+|. +...|..+..+|.. .
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-----------------~a~a~~~La~~~~~~~~~g~~~~~ 317 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-----------------SIAPYCALAECYLSMAQMGIFDKQ 317 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-----------------cHHHHHHHHHHHHHHHHcCCcccc
Confidence 44555555555322 23467999999999887664 56667666655542 3
Q ss_pred CCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHH
Q 011081 261 GAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFF 340 (494)
Q Consensus 261 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 340 (494)
+++++|...+++..+.. +-+..++..+...+...|++++|...|++..+.+ +.+...|..+...|...|++++|...+
T Consensus 318 ~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45889999999998875 4467788888889999999999999999999875 446778889999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 011081 341 REMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLF 420 (494)
Q Consensus 341 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 420 (494)
++..+.. +.+...+..++..+...|++++|...++++.+...+-+...+..+...+...|+.++|...+.+.... .
T Consensus 396 ~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~ 471 (553)
T PRK12370 396 NECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---E 471 (553)
T ss_pred HHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---c
Confidence 9998874 22333344455556778999999999999887642223445677778888999999999999854433 2
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc
Q 011081 421 PT-EKSYMFLIKGLCEEGKMEEALKVQAEMVGK-GFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQ 488 (494)
Q Consensus 421 p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 488 (494)
|+ ....+.+...|+..| ++|...++.+.+. .-.+....+ +-..|.-.|+.+.+..+ +++.+.+
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 33 334455556667777 5888877777654 222222222 33345556776666666 7776654
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.42 E-value=3.6e-10 Score=100.88 Aligned_cols=197 Identities=14% Similarity=0.119 Sum_probs=95.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011081 285 YSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCR 364 (494)
Q Consensus 285 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 364 (494)
+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.|++..+.. +.+...+..+...+..
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 3334444444444444444444443332 2233344444444444444444444444444432 2233344444444445
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011081 365 AGDVDSAILVYNDMCRKGFEP-EGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEAL 443 (494)
Q Consensus 365 ~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 443 (494)
.|++++|.+.++...+....+ ....+..+...+...|++++|.+.+.+.+.... .+...+..+...+...|++++|.
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP--QRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CChHHHHHHHHHHHHcCCHHHHH
Confidence 555555555555544321111 222344444455555566666555554443321 22344555566666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 444 KVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFE 486 (494)
Q Consensus 444 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 486 (494)
+.+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 666666554 233445555555666666666666666665544
No 51
>PF13041 PPR_2: PPR repeat family
Probab=99.41 E-value=5.6e-13 Score=86.49 Aligned_cols=50 Identities=36% Similarity=0.852 Sum_probs=36.3
Q ss_pred cCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHh
Q 011081 245 PNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCE 294 (494)
Q Consensus 245 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 294 (494)
||+++||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56777777777777777777777777777777777777777777777654
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=6.2e-10 Score=99.36 Aligned_cols=202 Identities=15% Similarity=0.116 Sum_probs=168.6
Q ss_pred cCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHH
Q 011081 245 PNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTII 324 (494)
Q Consensus 245 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 324 (494)
.....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 356778889999999999999999999998764 4456788889999999999999999999998875 44667888899
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 011081 325 GGFCEIGEMARAEEFFREMGLSGV-ESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRV 403 (494)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 403 (494)
..|...|++++|.+.|++...... ......+..+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 999999999999999999987532 2344567778889999999999999999998864 23466788888999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 404 FEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 404 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (494)
++|...+++.... ...+...+..+...+...|+.++|..+.+.+.+
T Consensus 186 ~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999976654 234566777788888899999999999888764
No 53
>PF13041 PPR_2: PPR repeat family
Probab=99.36 E-value=2.5e-12 Score=83.43 Aligned_cols=50 Identities=42% Similarity=0.717 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011081 421 PTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMK 470 (494)
Q Consensus 421 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 470 (494)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999875
No 54
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.34 E-value=1.4e-07 Score=90.21 Aligned_cols=305 Identities=11% Similarity=-0.029 Sum_probs=216.3
Q ss_pred hhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccc
Q 011081 158 PFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDV 237 (494)
Q Consensus 158 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 237 (494)
..+|..--..|.+.+. ++-|..+|...++.-. -+...|......--..|..++-..+|.++...-
T Consensus 516 ~~tw~~da~~~~k~~~---~~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Esl~Allqkav~~~----------- 580 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPA---IECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC----------- 580 (913)
T ss_pred HhHHhhhHHHHHhcch---HHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-----------
Confidence 3566667777777777 7888888877776422 255667666666666777888888888876543
Q ss_pred ccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011081 238 KRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDV 317 (494)
Q Consensus 238 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 317 (494)
+.....|-.....+-..|+...|..++.+..+.. +-+...|-.-+..-.....++.|..+|.+.... .|+.
T Consensus 581 ------pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTe 651 (913)
T KOG0495|consen 581 ------PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTE 651 (913)
T ss_pred ------CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcc
Confidence 2356677777788888888888888888887764 336677888888888888889999888887765 5677
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 011081 318 VAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGEL 397 (494)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 397 (494)
.+|.--+..-.-.++.++|.+++++..+. .+--...|..+.+.+-+.++.+.|...|..-.+. ++-..-.|..+...=
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakle 729 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLE 729 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHH
Confidence 77766666666678888888888887765 2333456777777888888888888888765443 233344566666666
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------------------------
Q 011081 398 CDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK------------------------- 452 (494)
Q Consensus 398 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------- 452 (494)
-+.|.+-.|..+++....+. +-+...|-..|..=.+.|+.+.|..+..+.++.
T Consensus 730 Ek~~~~~rAR~ildrarlkN--Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~ 807 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKN--PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSI 807 (913)
T ss_pred HHhcchhhHHHHHHHHHhcC--CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHH
Confidence 67788888888888655443 356677888888888889888888777666541
Q ss_pred ----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 453 ----GFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 453 ----~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
....|..+.-++...+....++++|++.|++..+.++.
T Consensus 808 DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 808 DALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred HHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 12334444455555566667788888888888775544
No 55
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=7.1e-09 Score=95.54 Aligned_cols=226 Identities=11% Similarity=0.072 Sum_probs=179.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCH
Q 011081 254 MVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEM 333 (494)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 333 (494)
...+.-.|+.-.|..-|+..+...-. +...|.-+..+|....+.++..+.|+...+.+ +-|..+|..-.+++.-.+++
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~ 410 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQY 410 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHH
Confidence 33445578889999999998887533 23338888889999999999999999998876 55788999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 334 ARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKAR 413 (494)
Q Consensus 334 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 413 (494)
++|..=|++..... +-+...|..+..+..+.+++++++..|++.+++ ++--...|+.....+..+++++.|.+.|+..
T Consensus 411 e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 411 EEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 99999999998765 556777888888888999999999999999876 4556788999999999999999999999977
Q ss_pred HHhCCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 414 VVKFGL------FPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEP-SLEIYSAFIDGYMKEGNVEMATMLRKEMFE 486 (494)
Q Consensus 414 ~~~~~~------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 486 (494)
+.-... .+.+.+-..++..-. .+++..|.+++.+.++. .| ....|..|...-.+.|+.++|+++|++-..
T Consensus 489 i~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 489 IELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 754322 122222223332222 38999999999999865 44 467899999999999999999999987654
No 56
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=9.6e-08 Score=87.93 Aligned_cols=350 Identities=14% Similarity=0.098 Sum_probs=207.3
Q ss_pred CchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChH-HHHHHHHHHhhhcCCChhhHH
Q 011081 84 NPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKL-KLFEVLVKTYRECGSAPFVFD 162 (494)
Q Consensus 84 ~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~ 162 (494)
+...|..+|..+..-. ..+...|---+.+=.+++.+..|+.+++.++..- |-+ .+|-.
T Consensus 88 e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l---PRVdqlWyK---------------- 146 (677)
T KOG1915|consen 88 EIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL---PRVDQLWYK---------------- 146 (677)
T ss_pred HHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc---chHHHHHHH----------------
Confidence 3445667777664322 2344567667777788888888888888877622 111 11111
Q ss_pred HHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccc
Q 011081 163 LLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVR 242 (494)
Q Consensus 163 ~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (494)
-+..=...|+ +..|.++|++..+ ..|+...|++.++.-.+.+.++.|..+|+...-
T Consensus 147 -Y~ymEE~LgN---i~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~------------------ 202 (677)
T KOG1915|consen 147 -YIYMEEMLGN---IAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL------------------ 202 (677)
T ss_pred -HHHHHHHhcc---cHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe------------------
Confidence 1111223466 8889999988876 578899999999998999999999999998854
Q ss_pred cccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHh----HHHHHHHHHHhcCCHHHHHHHHHHHHhCC------
Q 011081 243 VRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCY----SYSVLMAVFCEERRMREAEKLWEEMRDKN------ 312 (494)
Q Consensus 243 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~g------ 312 (494)
+.|++.+|---...=.+.|+...|..+|....+. -.|.. .|.+....=.++..++.|.-+|+-.+..=
T Consensus 203 ~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~rae 280 (677)
T KOG1915|consen 203 VHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAE 280 (677)
T ss_pred ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHH
Confidence 4678888888777777888888888888777654 11222 23333333334555566655555444330
Q ss_pred -------------------------------------CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH---
Q 011081 313 -------------------------------------VEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSS--- 352 (494)
Q Consensus 313 -------------------------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--- 352 (494)
-+-|-.+|--.+..-...|+.+...++|++...+ ++|-.
T Consensus 281 eL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr 359 (677)
T KOG1915|consen 281 ELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKR 359 (677)
T ss_pred HHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHH
Confidence 0223344444555555556666666666666554 23321
Q ss_pred ----HHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH----hcCCHHHHHHHHHHHHHhCCCCC
Q 011081 353 ----VTFEHLVNG---YCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELC----DKRRVFEALDILKARVVKFGLFP 421 (494)
Q Consensus 353 ----~~~~~li~~---~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~p 421 (494)
..|..+=.+ -....+.+.+.++|+..++. ++-...||..+--.|+ ++.++..|.+++-..+ |.-|
T Consensus 360 ~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cP 435 (677)
T KOG1915|consen 360 YWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCP 435 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCC
Confidence 111111111 12345566666666666552 3334445544433332 4556666666655433 4456
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 422 TEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFE 486 (494)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 486 (494)
...+|...|..=.+.++++.+.+++++.++-+ +-+..+|......-...|+.+.|+.+|+-.+.
T Consensus 436 K~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 436 KDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred chhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 66666666666666677777777777766542 22456666665555666777777776666554
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.30 E-value=3.9e-09 Score=103.78 Aligned_cols=229 Identities=14% Similarity=0.063 Sum_probs=154.2
Q ss_pred ccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcC-------CChhhHHHHHHHHH
Q 011081 97 HKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECG-------SAPFVFDLLIKCCL 169 (494)
Q Consensus 97 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~li~~~~ 169 (494)
...|+.|+.+||..+|.-||..|+.+.|- +|..|.... ....-.+|+.++.+.+..+ |.+++|..|..+|.
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr 94 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYR 94 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHH
Confidence 45678999999999999999999999998 877775533 3334567888887644443 35689999999999
Q ss_pred hcCChhcHHHHHHHHHHHH----hCCCCcChHh--------------HHHHHHHHHcCCChhHHHHHHHHHhcCCcccc-
Q 011081 170 EVKNIEKIETCVDIVRMLM----SRGLSVKVST--------------CNALIWEVSRGKGVISGYEIYREVFGLDSDAT- 230 (494)
Q Consensus 170 ~~~~~~~~~~a~~~~~~m~----~~g~~~~~~~--------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~- 230 (494)
+.|+...++.+.+.+.... ..|+..-... -...+......|-++.+++++..+.....+..
T Consensus 95 ~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~ 174 (1088)
T KOG4318|consen 95 IHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPF 174 (1088)
T ss_pred hccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchH
Confidence 9999544455555333322 2332110000 01112222233444444444433311110000
Q ss_pred -c-------------ccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcC
Q 011081 231 -A-------------GIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEER 296 (494)
Q Consensus 231 -~-------------~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 296 (494)
. .+.+..+...+ .|+..+|.+++.+-..+|+.+.|..++.+|++.|++.+.+-|-.|+-+ .+
T Consensus 175 ~vfLrqnv~~ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~ 250 (1088)
T KOG4318|consen 175 QVFLRQNVVDNTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---IN 250 (1088)
T ss_pred HHHHHHhccCCchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---Cc
Confidence 0 00011122223 799999999999999999999999999999999999998888888766 88
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC
Q 011081 297 RMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIG 331 (494)
Q Consensus 297 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 331 (494)
+...+..+..-|.+.|+.|+..|+...+-.+.++|
T Consensus 251 ~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 251 AAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred cchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 88999999999999999999999877766555544
No 58
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=8.3e-10 Score=96.47 Aligned_cols=238 Identities=11% Similarity=-0.008 Sum_probs=195.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
|-.--+.|.++|.+.|.+.+|.+-|..-.+. .|-+.||-.|-..|.+..+.+.|+.++.+-.+. ++-|+....-+..
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHH
Confidence 3343477889999999999999999988876 677889999999999999999999999998876 2334444456777
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 011081 326 GFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFE 405 (494)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 405 (494)
.+-..++.++|.++|++..+.. +.++....++..+|.-.++.|-|+.+|+++++.|+. +...|+.+.-+|.-.++++-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence 8888999999999999998875 667778888888999999999999999999999965 77888888888889999999
Q ss_pred HHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 406 ALDILKARVVKFGLFPT--EKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKE 483 (494)
Q Consensus 406 a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 483 (494)
++.-|++.+... -.|+ ...|-.+-......|++..|.+-|+-.+... .-....++.|.-.-.+.|++++|..++..
T Consensus 377 ~L~sf~RAlsta-t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 377 VLPSFQRALSTA-TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hHHHHHHHHhhc-cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 999988655432 1233 2345556667778899999999999988653 33467888888888899999999999998
Q ss_pred HHHcccc
Q 011081 484 MFENQVR 490 (494)
Q Consensus 484 m~~~~~~ 490 (494)
.....+.
T Consensus 455 A~s~~P~ 461 (478)
T KOG1129|consen 455 AKSVMPD 461 (478)
T ss_pred hhhhCcc
Confidence 8775543
No 59
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.24 E-value=5.9e-10 Score=109.37 Aligned_cols=244 Identities=14% Similarity=0.098 Sum_probs=135.8
Q ss_pred HHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccc-------cccccc-cccccCHHHHHHHH
Q 011081 183 IVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIG-------KDVKRV-VRVRPNVHTFNALM 254 (494)
Q Consensus 183 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~p~~~~~~~li 254 (494)
++..+...|+.|+.+||.++|.-||..|+++.|- +|.-|.-.......+.- +.+... .--.|...||..|.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll 90 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLL 90 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHH
Confidence 4555666777787778888888888777777776 66655432211111000 001000 11267788888888
Q ss_pred HHHHhcCCHhH---HHHHHHHHHH----cCCCcCHhHH--------------HHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011081 255 VGFYREGAFEK---VEDVWVEMAR----LGCEPDCYSY--------------SVLMAVFCEERRMREAEKLWEEMRDKNV 313 (494)
Q Consensus 255 ~~~~~~g~~~~---a~~~~~~m~~----~g~~p~~~~~--------------~~li~~~~~~g~~~~a~~~~~~m~~~g~ 313 (494)
.+|.+.||+.. +++.+..... .|+..-..-+ ..++....-.|-++.+.+++..+....-
T Consensus 91 ~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~ 170 (1088)
T KOG4318|consen 91 KAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAW 170 (1088)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccc
Confidence 88888887654 2221221111 1221111111 1122223333444444444433322110
Q ss_pred -CCCHhHHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 011081 314 -EHDVVAYNTIIGGFCEIG-EMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIE 391 (494)
Q Consensus 314 -~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 391 (494)
.|-.+ .+.-+.... .+++-..+.+...+ .|++.+|.+++.+-...|+.+.|..++.+|.+.|++.+..-|.
T Consensus 171 ~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFw 243 (1088)
T KOG4318|consen 171 NAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFW 243 (1088)
T ss_pred cchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccch
Confidence 01111 122222222 22333322222222 4788888888888888888888888888888888887877777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011081 392 VLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGK 438 (494)
Q Consensus 392 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 438 (494)
.|+-+ .+...-+..+++ .|...|+.|+..|+.-.+..+..+|.
T Consensus 244 pLl~g---~~~~q~~e~vlr-gmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 244 PLLLG---INAAQVFEFVLR-GMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhhc---CccchHHHHHHH-HHHHhcCCCCcchhHHHHHhhhcchh
Confidence 77655 666666666665 77888888888888877777777555
No 60
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.23 E-value=8.4e-07 Score=81.90 Aligned_cols=372 Identities=13% Similarity=0.071 Sum_probs=243.2
Q ss_pred ccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhH
Q 011081 82 KNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVF 161 (494)
Q Consensus 82 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (494)
.++..-|.++|.... .+.|+..+|.+.|+.=.+-...+.|+.+++..+-. .|.+..|-.-.
T Consensus 154 LgNi~gaRqiferW~---~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~---HP~v~~wikya------------- 214 (677)
T KOG1915|consen 154 LGNIAGARQIFERWM---EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV---HPKVSNWIKYA------------- 214 (677)
T ss_pred hcccHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee---cccHHHHHHHH-------------
Confidence 356667777775433 35789999999999999999999999999987752 23333332222
Q ss_pred HHHHHHHHhcCChhcHHHHHHHHHHHHh-CCCC-cChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccc--------
Q 011081 162 DLLIKCCLEVKNIEKIETCVDIVRMLMS-RGLS-VKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATA-------- 231 (494)
Q Consensus 162 ~~li~~~~~~~~~~~~~~a~~~~~~m~~-~g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------- 231 (494)
+-=.+.|. +..|..+|+..++ .|-. .+...+.+....-.+++.++.|.-+|.-+++.-|....
T Consensus 215 ----rFE~k~g~---~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~ 287 (677)
T KOG1915|consen 215 ----RFEEKHGN---VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYT 287 (677)
T ss_pred ----HHHHhcCc---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 22223333 4444444444333 1110 11222333333333444555555555544443332110
Q ss_pred ----------ccccc--cccc-------cccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH--hHHHHHHH
Q 011081 232 ----------GIGKD--VKRV-------VRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDC--YSYSVLMA 290 (494)
Q Consensus 232 ----------~~~~~--~~~~-------~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~li~ 290 (494)
|+.+. .++. ..-.-|-.+|-..+..-...|+.+...++|++.+.. ++|-. ..|.-.|-
T Consensus 288 ~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIY 366 (677)
T KOG1915|consen 288 AFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIY 366 (677)
T ss_pred HHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHH
Confidence 00000 0111 111337888888888888899999999999998865 45522 12222211
Q ss_pred --------HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHH----HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011081 291 --------VFCEERRMREAEKLWEEMRDKNVEHDVVAYNTII----GGFCEIGEMARAEEFFREMGLSGVESSSVTFEHL 358 (494)
Q Consensus 291 --------~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 358 (494)
.=....+.+.+.++|+..++. ++-...|+.-+= .--.++.++..|.+++.... |..|-..+|...
T Consensus 367 LWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~Y 443 (677)
T KOG1915|consen 367 LWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGY 443 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHH
Confidence 123468899999999999884 344555554443 34457788999999988776 457888999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011081 359 VNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGK 438 (494)
Q Consensus 359 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 438 (494)
|..-.+.++++.+..+|+..++-+ +-+..+|......-...|+.+.|..+|.-.+.+..+......|.+.|+.=...|.
T Consensus 444 IelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E 522 (677)
T KOG1915|consen 444 IELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGE 522 (677)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcch
Confidence 999999999999999999999986 4478888888888888999999999999666655444455678888888888999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHH
Q 011081 439 MEEALKVQAEMVGKGFEPSLEIYSAFIDGYM-----KEG-----------NVEMATMLRKEMFE 486 (494)
Q Consensus 439 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-----~~g-----------~~~~a~~~~~~m~~ 486 (494)
++.|..+++++++. .+-..+|-+...--. +.| ++..|+++|++...
T Consensus 523 ~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 523 FEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 99999999999976 344446655544222 334 56678888877643
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=3.1e-09 Score=92.98 Aligned_cols=236 Identities=13% Similarity=-0.022 Sum_probs=196.1
Q ss_pred hHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 011081 196 VSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMAR 275 (494)
Q Consensus 196 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (494)
-..-+.+.++|.+.|...+|.+.|...++. .|-+.||-.|-++|.+..+...|+.++.+-.+
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q------------------~~~~dTfllLskvY~ridQP~~AL~~~~~gld 284 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ------------------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD 284 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhc------------------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh
Confidence 344467889999999999999999998764 56788999999999999999999999999887
Q ss_pred cCCCcCHhHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 011081 276 LGCEPDCYSY-SVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVT 354 (494)
Q Consensus 276 ~g~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 354 (494)
. -|-.+|| .-..+.+-..++.++|.++|+...+.. +.++.....+...|.-.++++.|+.+|+++.+.|+ .+...
T Consensus 285 ~--fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speL 360 (478)
T KOG1129|consen 285 S--FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPEL 360 (478)
T ss_pred c--CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHH
Confidence 6 4555555 556677888899999999999998874 55777888888889999999999999999999994 67888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011081 355 FEHLVNGYCRAGDVDSAILVYNDMCRKGFEPE--GSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKG 432 (494)
Q Consensus 355 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 432 (494)
|+.+.-+|.-.+++|-++.-|.+....--.|+ ..+|..+-......|++..|.+.|+-.+... .-+...++.|.-.
T Consensus 361 f~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d--~~h~ealnNLavL 438 (478)
T KOG1129|consen 361 FCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD--AQHGEALNNLAVL 438 (478)
T ss_pred HhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC--cchHHHHHhHHHH
Confidence 99999999999999999999998876543343 4567777777788999999999998555432 3456788988888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC
Q 011081 433 LCEEGKMEEALKVQAEMVGKGFEPS 457 (494)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~~~~p~ 457 (494)
-.+.|++++|..+++...+ +.|+
T Consensus 439 ~~r~G~i~~Arsll~~A~s--~~P~ 461 (478)
T KOG1129|consen 439 AARSGDILGARSLLNAAKS--VMPD 461 (478)
T ss_pred HhhcCchHHHHHHHHHhhh--hCcc
Confidence 8999999999999998874 3555
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.20 E-value=1.5e-08 Score=97.70 Aligned_cols=240 Identities=20% Similarity=0.181 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-----C-CCcCHhH-HHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARL-----G-CEPDCYS-YSVLMAVFCEERRMREAEKLWEEMRDK-----NV- 313 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~- 313 (494)
..+...+...|...|+++.|+.++....+. | ..|...+ .+.+...|...+++++|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 445555899999999999999999988764 2 1233333 334677889999999999999998642 31
Q ss_pred -CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C
Q 011081 314 -EHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS-----GV-ESSS-VTFEHLVNGYCRAGDVDSAILVYNDMCRK---G 382 (494)
Q Consensus 314 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~ 382 (494)
+--..+++.|...|.+.|++++|..++++..+- |. .|.+ ..++.+...|+..+++++|..++....+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 122456788888999999999998888876432 21 2222 23566778899999999999999876552 1
Q ss_pred CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q 011081 383 FEPE----GSTIEVLIGELCDKRRVFEALDILKARVVKF----G-LFP-TEKSYMFLIKGLCEEGKMEEALKVQAEMVG- 451 (494)
Q Consensus 383 ~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 451 (494)
+.++ ..+++.|...|...|++.+|.+++++.+... + ..+ ....++.|...|.+.+++++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 3578899999999999999999999877543 1 111 234678888999999999999988887653
Q ss_pred ---CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 452 ---KGF-EPS-LEIYSAFIDGYMKEGNVEMATMLRKEMFE 486 (494)
Q Consensus 452 ---~~~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 486 (494)
.|. .|+ ..+|..|...|...|++++|.++.+....
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 222 233 57899999999999999999999888764
No 63
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.19 E-value=2.1e-07 Score=90.96 Aligned_cols=294 Identities=15% Similarity=0.091 Sum_probs=198.3
Q ss_pred HHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhC
Q 011081 111 IIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSR 190 (494)
Q Consensus 111 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~ 190 (494)
....+...|++++|++.++.-... .-+...........+.+.|+ .++|..++..+++.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-------------------I~Dk~~~~E~rA~ll~kLg~---~~eA~~~y~~Li~r 67 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-------------------ILDKLAVLEKRAELLLKLGR---KEEAEKIYRELIDR 67 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-------------------CCCHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Confidence 345677889999999988764331 11223445566778899999 99999999999998
Q ss_pred CCCcChHhHHHHHHHHHcC-----CChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCH-h
Q 011081 191 GLSVKVSTCNALIWEVSRG-----KGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAF-E 264 (494)
Q Consensus 191 g~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~ 264 (494)
++. |..-|..+..+..-. .+.+...++|+++....|. ..+...+.-.+.....+ .
T Consensus 68 NPd-n~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~------------------s~~~~rl~L~~~~g~~F~~ 128 (517)
T PF12569_consen 68 NPD-NYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPR------------------SDAPRRLPLDFLEGDEFKE 128 (517)
T ss_pred CCC-cHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCcc------------------ccchhHhhcccCCHHHHHH
Confidence 754 555566666665322 2467778888888654432 12111111111111122 2
Q ss_pred HHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C----------CCCCH--hHHHHHHHHHH
Q 011081 265 KVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK----N----------VEHDV--VAYNTIIGGFC 328 (494)
Q Consensus 265 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g----------~~~~~--~~~~~li~~~~ 328 (494)
.+..++..+...|++ .+|+.|-..|....+.+-..+++...... + -+|+. .++.-+...|-
T Consensus 129 ~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 455666777777865 36777777777666666666666655432 1 12344 34566778888
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011081 329 EIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALD 408 (494)
Q Consensus 329 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 408 (494)
..|++++|++++++..+.. +-.+..|..-...+-..|++++|.+.++.....+. -|...-+..+..+.+.|++++|.+
T Consensus 206 ~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~ 283 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEK 283 (517)
T ss_pred HhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999988863 33467788888899999999999999999988763 477777778888899999999999
Q ss_pred HHHHHHHhCCCCCCHHH--------HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 409 ILKARVVKFGLFPTEKS--------YMFLIKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 409 ~~~~~~~~~~~~p~~~~--------~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (494)
++. .....+..|-... ......+|.+.|++..|++.|....+
T Consensus 284 ~~~-~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 284 TAS-LFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHH-hhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 987 4444443332211 13445678899999888877666654
No 64
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=7e-08 Score=90.78 Aligned_cols=284 Identities=10% Similarity=0.015 Sum_probs=201.2
Q ss_pred hhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccc
Q 011081 159 FVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVK 238 (494)
Q Consensus 159 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 238 (494)
+....-..-|...++ +++..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+..|.
T Consensus 245 dll~~~ad~~y~~c~---f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~---------- 310 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCR---FKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS---------- 310 (611)
T ss_pred HHHHHHHHHHHHcCh---HHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC----------
Confidence 334444555666667 888888888877753 234455555566777777766665555566555443
Q ss_pred cccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 011081 239 RVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVV 318 (494)
Q Consensus 239 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 318 (494)
...+|-++.--|.-.|+.++|.+.|.+..... +.=...|-...+.|+-.|..|+|...|...-+.= +-...
T Consensus 311 -------~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hl 381 (611)
T KOG1173|consen 311 -------KALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHL 381 (611)
T ss_pred -------CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcc
Confidence 67888888888888899999999998765442 1123578888888988999999988887765531 11111
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C--CCCChhhHHH
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK----G--FEPEGSTIEV 392 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~--~~p~~~~~~~ 392 (494)
-+--+..-|.+.++++.|.++|.+..... +-|+...+-+.-.....+.+.+|..+|+..+.. + ..-...+++.
T Consensus 382 P~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N 460 (611)
T KOG1173|consen 382 PSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN 460 (611)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence 12223344667888899999998887664 667777888877777788889999988877631 0 1124456788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011081 393 LIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMK 470 (494)
Q Consensus 393 li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 470 (494)
|..+|.+.+++++|+..++..+... +.+..+|.++.-.|...|+++.|.+.|.+.+ .+.|+-.+-..++..+..
T Consensus 461 LGH~~Rkl~~~~eAI~~~q~aL~l~--~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 461 LGHAYRKLNKYEEAIDYYQKALLLS--PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcC--CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHH
Confidence 8888999999999999998777654 3567788888888888999999999999888 678888777777765443
No 65
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.17 E-value=1.5e-07 Score=91.98 Aligned_cols=292 Identities=16% Similarity=0.161 Sum_probs=203.8
Q ss_pred HHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccccccccc
Q 011081 166 KCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRP 245 (494)
Q Consensus 166 ~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (494)
..+...|+ .++|++.+..-.+. +.............+.+.|+.++|..+|..+++.+|+
T Consensus 12 ~il~e~g~---~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd----------------- 70 (517)
T PF12569_consen 12 SILEEAGD---YEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD----------------- 70 (517)
T ss_pred HHHHHCCC---HHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----------------
Confidence 34567788 99999999775543 3324566777888999999999999999999988765
Q ss_pred CHHHHHHHHHHHHhcC-----CHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHhH
Q 011081 246 NVHTFNALMVGFYREG-----AFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRM-REAEKLWEEMRDKNVEHDVVA 319 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~ 319 (494)
|..-|..+..+..-.. +.+...++++++...- |.......+.-.+.....+ ..+..++..+...|++ .+
T Consensus 71 n~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---sl 145 (517)
T PF12569_consen 71 NYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SL 145 (517)
T ss_pred cHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hH
Confidence 6666666666663332 5677788898887652 4433333333223222233 3455666777888854 35
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhC----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011081 320 YNTIIGGFCEIGEMARAEEFFREMGLS----G----------VESSSV--TFEHLVNGYCRAGDVDSAILVYNDMCRKGF 383 (494)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~m~~~----~----------~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 383 (494)
++.|-..|....+.+-..+++...... + -+|+.. ++.-+...|...|++++|+++++..+++.
T Consensus 146 F~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht- 224 (517)
T PF12569_consen 146 FSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT- 224 (517)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-
Confidence 666666676666655556666655432 1 134443 44666788999999999999999999874
Q ss_pred CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---
Q 011081 384 EPE-GSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLE--- 459 (494)
Q Consensus 384 ~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--- 459 (494)
|+ ...|..-...+-+.|++.+|.+.++.. .... .-|...=+-.+..+.+.|++++|.+++....+.+..|-..
T Consensus 225 -Pt~~ely~~KarilKh~G~~~~Aa~~~~~A-r~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~ 301 (517)
T PF12569_consen 225 -PTLVELYMTKARILKHAGDLKEAAEAMDEA-RELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLND 301 (517)
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH-HhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHH
Confidence 44 667888889999999999999998843 3322 2455555667788899999999999999998776544321
Q ss_pred ---HH--HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011081 460 ---IY--SAFIDGYMKEGNVEMATMLRKEMFEN 487 (494)
Q Consensus 460 ---~~--~~li~~~~~~g~~~~a~~~~~~m~~~ 487 (494)
.| .....+|.+.|++..|++-|..+.+.
T Consensus 302 mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 302 MQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 22 34456899999999999988777653
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.6e-06 Score=78.69 Aligned_cols=289 Identities=13% Similarity=0.082 Sum_probs=202.8
Q ss_pred HHHHHHHHHHHHhC-CCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHH
Q 011081 177 IETCVDIVRMLMSR-GLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMV 255 (494)
Q Consensus 177 ~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~ 255 (494)
-..+...+-.+... -+.-|+.....+..++...|+.++|...|++....+++ ++.....-.-
T Consensus 212 hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-----------------~i~~MD~Ya~ 274 (564)
T KOG1174|consen 212 HSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-----------------NVEAMDLYAV 274 (564)
T ss_pred cchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-----------------hhhhHHHHHH
Confidence 33444444333332 24457788889999999999999999999999877654 3444444444
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHH
Q 011081 256 GFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMAR 335 (494)
Q Consensus 256 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 335 (494)
.+.+.|++++...+...+.... .-+...|..-.......++++.|+.+-++.++.. +.+...|-.=...+...|+.++
T Consensus 275 LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~ 352 (564)
T KOG1174|consen 275 LLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQ 352 (564)
T ss_pred HHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHH
Confidence 4567888888888887776542 2233444444555566788888988888887764 3455566555667788899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH-HHHH-hcCCHHHHHHHHHHH
Q 011081 336 AEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLI-GELC-DKRRVFEALDILKAR 413 (494)
Q Consensus 336 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~-~~~~~~~a~~~~~~~ 413 (494)
|.-.|+..+... +-+...|.-|+.+|...|++.+|...-+...+. +..+..+...+- ..+. ....-++|.+++++.
T Consensus 353 A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 353 AVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred HHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 999999887653 567789999999999999999988777665543 123444444331 2222 223446788887765
Q ss_pred HHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccccc
Q 011081 414 VVKFGLFPTE-KSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVRQ 491 (494)
Q Consensus 414 ~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 491 (494)
++. .|+. ...+.+...|...|..+++..+++..+. ..||....+.|.+.+...+.+++|.+.|...+..+|+.
T Consensus 431 L~~---~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 431 LKI---NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred hcc---CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 543 4553 3556777788889999999999998884 48898899999999998999999999888888777654
No 67
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.1e-07 Score=87.67 Aligned_cols=287 Identities=15% Similarity=0.034 Sum_probs=216.9
Q ss_pred CCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHH
Q 011081 102 KHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCV 181 (494)
Q Consensus 102 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~ 181 (494)
..++.......+-|-...++.+...+.+.+.+. .+..+..+-.=|.++...|+ ..+-.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-------------------dpfh~~~~~~~ia~l~el~~---~n~Lf 298 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEK-------------------DPFHLPCLPLHIACLYELGK---SNKLF 298 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-------------------CCCCcchHHHHHHHHHHhcc---cchHH
Confidence 445555555566666677777777777776653 34445556666777888888 77777
Q ss_pred HHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcC
Q 011081 182 DIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREG 261 (494)
Q Consensus 182 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 261 (494)
.+=..+++.-+. .+.+|-++.--|...|+..+|++.|.+....++. =...|-.....|.-.|
T Consensus 299 ~lsh~LV~~yP~-~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-----------------fgpaWl~fghsfa~e~ 360 (611)
T KOG1173|consen 299 LLSHKLVDLYPS-KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-----------------FGPAWLAFGHSFAGEG 360 (611)
T ss_pred HHHHHHHHhCCC-CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-----------------ccHHHHHHhHHhhhcc
Confidence 777777775433 6788888888888889999999999999776543 3567999999999999
Q ss_pred CHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHH
Q 011081 262 AFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFR 341 (494)
Q Consensus 262 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 341 (494)
..++|+..+...-+.= +-..--+--+.--|.+.++++.|.+.|.+..... +.|+..++-+.-.....+.+.+|..+|+
T Consensus 361 EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~ 438 (611)
T KOG1173|consen 361 EHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQ 438 (611)
T ss_pred hHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHH
Confidence 9999999888765531 1111122234456888999999999999988763 5678888888888888999999999999
Q ss_pred HHHhC----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 342 EMGLS----G--VESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVV 415 (494)
Q Consensus 342 ~m~~~----~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 415 (494)
..+.. + ......+++.|..+|.+.+.+++|+..|++.+... +-+..++.++.-.|...|+++.|.+.|++.+
T Consensus 439 ~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL- 516 (611)
T KOG1173|consen 439 KALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL- 516 (611)
T ss_pred HHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH-
Confidence 87632 1 11245568899999999999999999999998874 5588899999999999999999999999765
Q ss_pred hCCCCCCHHHHHHHHHHHH
Q 011081 416 KFGLFPTEKSYMFLIKGLC 434 (494)
Q Consensus 416 ~~~~~p~~~~~~~li~~~~ 434 (494)
.+.|+..+-..++..+.
T Consensus 517 --~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 517 --ALKPDNIFISELLKLAI 533 (611)
T ss_pred --hcCCccHHHHHHHHHHH
Confidence 45688766666665443
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.14 E-value=4.9e-08 Score=90.11 Aligned_cols=95 Identities=11% Similarity=-0.065 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011081 285 YSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCR 364 (494)
Q Consensus 285 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 364 (494)
|..+...|.+.|++++|...|+...+.. +.+...|+.+...|...|++++|.+.|++..+.. +-+..+|..+...+..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4444444555555555555555544442 2234455555555555555555555555554432 2233444444444555
Q ss_pred cCCHHHHHHHHHHHHHC
Q 011081 365 AGDVDSAILVYNDMCRK 381 (494)
Q Consensus 365 ~g~~~~a~~~~~~m~~~ 381 (494)
.|++++|.+.|+...+.
T Consensus 145 ~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 145 GGRYELAQDDLLAFYQD 161 (296)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 55555555555554443
No 69
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=1.5e-07 Score=87.13 Aligned_cols=316 Identities=10% Similarity=0.026 Sum_probs=182.8
Q ss_pred HHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcC-hHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccc--c
Q 011081 163 LLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVK-VSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVK--R 239 (494)
Q Consensus 163 ~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~ 239 (494)
....-|.++|. +++|++.|...++. .|+ +..|.....+|...|+|+++.+.-...++.+|+..-.+.+.++ +
T Consensus 120 ~~GN~~f~~kk---Y~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 120 TKGNKFFRNKK---YDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred hhhhhhhhccc---HHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 34455778888 99999999999884 566 7788888889999999999998888888877652211111100 0
Q ss_pred ccc---cccCHHHHHHHHHHHHhcCCHhHHHHHHHHH--------HH-cC--CCcCHhHHHHHHHH--------------
Q 011081 240 VVR---VRPNVHTFNALMVGFYREGAFEKVEDVWVEM--------AR-LG--CEPDCYSYSVLMAV-------------- 291 (494)
Q Consensus 240 ~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m--------~~-~g--~~p~~~~~~~li~~-------------- 291 (494)
..| -....+|-..+..+|....-...+.++++.. .+ .+ +-|......+....
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 000 0111222233333333222222233333321 11 11 22222111111100
Q ss_pred -------------------------------------------------------------HHhcCCHHHHHHHHHHHHh
Q 011081 292 -------------------------------------------------------------FCEERRMREAEKLWEEMRD 310 (494)
Q Consensus 292 -------------------------------------------------------------~~~~g~~~~a~~~~~~m~~ 310 (494)
+.-.|+.-.|..-|+..++
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 1123444455555555554
Q ss_pred CCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 011081 311 KNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTI 390 (494)
Q Consensus 311 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 390 (494)
.... +...|--+..+|....+.++..+.|.+....+ +-++.+|..-...+.-.+++++|..=|++.+..+ +-+...|
T Consensus 355 l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~ 431 (606)
T KOG0547|consen 355 LDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAY 431 (606)
T ss_pred cCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHH
Confidence 4311 22225556667777777777777777777665 5566677777777777777777777777776654 2244555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------HHHH
Q 011081 391 EVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS---------LEIY 461 (494)
Q Consensus 391 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---------~~~~ 461 (494)
.-+.-+..+.+++++++..|++..++. +--+..|+.....+...++++.|.+.|+..++. .|+ +.+.
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVH 507 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhh
Confidence 566666667778888888887665554 334556777777788888888888888877753 332 1122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHccccc
Q 011081 462 SAFIDGYMKEGNVEMATMLRKEMFENQVRQ 491 (494)
Q Consensus 462 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 491 (494)
-.++..-.+ +++..|.+++++.++.+++-
T Consensus 508 Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkc 536 (606)
T KOG0547|consen 508 KALLVLQWK-EDINQAENLLRKAIELDPKC 536 (606)
T ss_pred hhHhhhchh-hhHHHHHHHHHHHHccCchH
Confidence 222222222 77788888888887776654
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.11 E-value=2e-07 Score=86.04 Aligned_cols=231 Identities=9% Similarity=-0.054 Sum_probs=160.2
Q ss_pred CChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHH
Q 011081 210 KGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLM 289 (494)
Q Consensus 210 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 289 (494)
+..+.+..-+.+++...+. ...-....|..+...|...|+.++|...|++..+.. +.+...|+.+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~-------------~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg 105 (296)
T PRK11189 40 LQQEVILARLNQILASRDL-------------TDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLG 105 (296)
T ss_pred hHHHHHHHHHHHHHccccC-------------CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 4556677777777653321 001135668888889999999999999999998875 44678999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 011081 290 AVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVD 369 (494)
Q Consensus 290 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 369 (494)
..+...|++++|...|+...+.. +-+..+|..+..++...|++++|.+.|++..+.. |+..........+...++.+
T Consensus 106 ~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~ 182 (296)
T PRK11189 106 IYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPK 182 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHH
Confidence 99999999999999999998864 3357788889999999999999999999998764 43322222223345678899
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHH
Q 011081 370 SAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFP-----TEKSYMFLIKGLCEEGKMEEALK 444 (494)
Q Consensus 370 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~ 444 (494)
+|...|+...... .|+... ..+.. ...|+..++ +.+..........+ ....|..+...+.+.|++++|..
T Consensus 183 ~A~~~l~~~~~~~-~~~~~~-~~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~ 257 (296)
T PRK11189 183 QAKENLKQRYEKL-DKEQWG-WNIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAA 257 (296)
T ss_pred HHHHHHHHHHhhC-CccccH-HHHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999997765442 333222 22332 234554443 23332222111111 23578889999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHH
Q 011081 445 VQAEMVGKGFEPSLEIYSA 463 (494)
Q Consensus 445 ~~~~m~~~~~~p~~~~~~~ 463 (494)
.|++..+.. .||-.-+..
T Consensus 258 ~~~~Al~~~-~~~~~e~~~ 275 (296)
T PRK11189 258 LFKLALANN-VYNFVEHRY 275 (296)
T ss_pred HHHHHHHhC-CchHHHHHH
Confidence 999999764 345444433
No 71
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.09 E-value=1.3e-06 Score=83.62 Aligned_cols=306 Identities=13% Similarity=0.050 Sum_probs=183.9
Q ss_pred hhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCC-CcChHh-HHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccc
Q 011081 159 FVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGL-SVKVST-CNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKD 236 (494)
Q Consensus 159 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 236 (494)
..+..+...+...|+ .+.+...+....+... .++... .......+...|++++|.+.+++..+..|.
T Consensus 7 ~a~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-------- 75 (355)
T cd05804 7 LGHAAAALLLLLGGE---RPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-------- 75 (355)
T ss_pred HHHHHHHHHHHhcCC---cchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--------
Confidence 344444555555666 6665555555444222 223221 222233456779999999999998776543
Q ss_pred cccccccccCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCcCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 237 VKRVVRVRPNVHTFNALMVGFYR----EGAFEKVEDVWVEMARLGCEPDC-YSYSVLMAVFCEERRMREAEKLWEEMRDK 311 (494)
Q Consensus 237 ~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 311 (494)
+...+.. ...+.. .+..+.+.+.+.. .....|+. .....+...+...|++++|.+.+++..+.
T Consensus 76 ---------~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 143 (355)
T cd05804 76 ---------DLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL 143 (355)
T ss_pred ---------cHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4445543 223333 3445555555544 11223333 34445667888999999999999999887
Q ss_pred CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCh
Q 011081 312 NVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGV-ESSS--VTFEHLVNGYCRAGDVDSAILVYNDMCRKGF-EPEG 387 (494)
Q Consensus 312 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~ 387 (494)
. +.+...+..+...|...|++++|...+++...... .++. ..|..+...+...|++++|..++++...... .+..
T Consensus 144 ~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~ 222 (355)
T cd05804 144 N-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPA 222 (355)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChH
Confidence 5 44577888899999999999999999999876531 1232 3455788889999999999999999865432 1122
Q ss_pred hhH-H--HHHHHHHhcCCHHHHHHH--HHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CC-
Q 011081 388 STI-E--VLIGELCDKRRVFEALDI--LKARVVKF-GLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFE---PS- 457 (494)
Q Consensus 388 ~~~-~--~li~~~~~~~~~~~a~~~--~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---p~- 457 (494)
... + .++..+...|....+.+. +....... ..............++...|+.++|.++++.+...... -.
T Consensus 223 ~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 302 (355)
T cd05804 223 LDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQ 302 (355)
T ss_pred HHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhh
Confidence 111 1 223333444433333222 11111111 00111122235667788899999999999998764222 01
Q ss_pred --HHHHHHHHH--HHHhcCCHHHHHHHHHHHHHcc
Q 011081 458 --LEIYSAFID--GYMKEGNVEMATMLRKEMFENQ 488 (494)
Q Consensus 458 --~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~~ 488 (494)
..+-..++. ++...|++++|.+.+.......
T Consensus 303 ~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 303 PARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 112222333 4568899999999998887654
No 72
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.09 E-value=5.1e-08 Score=94.12 Aligned_cols=240 Identities=17% Similarity=0.201 Sum_probs=160.8
Q ss_pred hhHHHHHHHHHhcCChhcHHHHHHHHHHHHhC-----CC-CcChHh-HHHHHHHHHcCCChhHHHHHHHHHhcCCccccc
Q 011081 159 FVFDLLIKCCLEVKNIEKIETCVDIVRMLMSR-----GL-SVKVST-CNALIWEVSRGKGVISGYEIYREVFGLDSDATA 231 (494)
Q Consensus 159 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~-----g~-~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 231 (494)
.++..+...|...|+ ++.|+.+++...+. |. .|.+.+ .+.+...|...+++++|..+|++++....
T Consensus 200 ~~~~~La~~y~~~g~---~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e---- 272 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGR---LEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE---- 272 (508)
T ss_pred HHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH----
Confidence 455568899999999 99999999987764 22 233333 44577788999999999999999865321
Q ss_pred cccccccccccc--ccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-----CC-CcCH-hHHHHHHHHHHhcCCHHHHH
Q 011081 232 GIGKDVKRVVRV--RPNVHTFNALMVGFYREGAFEKVEDVWVEMARL-----GC-EPDC-YSYSVLMAVFCEERRMREAE 302 (494)
Q Consensus 232 ~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~p~~-~~~~~li~~~~~~g~~~~a~ 302 (494)
..+|. +--..+++.|...|.+.|++++|..++++..+. |. .|.+ ..++.+...|+..+++++|.
T Consensus 273 -------~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~ 345 (508)
T KOG1840|consen 273 -------EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAK 345 (508)
T ss_pred -------HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHH
Confidence 11221 224677888889999999999998888876542 21 1222 23566777788889999988
Q ss_pred HHHHHHHhC---CCCC----CHhHHHHHHHHHHccCCHHHHHHHHHHHHhC-----C--CCCCHHHHHHHHHHHHhcCCH
Q 011081 303 KLWEEMRDK---NVEH----DVVAYNTIIGGFCEIGEMARAEEFFREMGLS-----G--VESSSVTFEHLVNGYCRAGDV 368 (494)
Q Consensus 303 ~~~~~m~~~---g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~--~~~~~~~~~~li~~~~~~g~~ 368 (494)
.+++...+. -+.+ -..+|+.|...|.+.|++++|.++|++.... | ..-.-..++.|...|.+.+++
T Consensus 346 ~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~ 425 (508)
T KOG1840|consen 346 KLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKY 425 (508)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhccc
Confidence 888765432 1111 2356888888888888888888888876543 1 111234567777778888888
Q ss_pred HHHHHHHHHHHH----CCC-CC-ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 369 DSAILVYNDMCR----KGF-EP-EGSTIEVLIGELCDKRRVFEALDILKA 412 (494)
Q Consensus 369 ~~a~~~~~~m~~----~~~-~p-~~~~~~~li~~~~~~~~~~~a~~~~~~ 412 (494)
++|.++|.+... .|. .| ...+|..|...|...|++++|.++.+.
T Consensus 426 ~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~ 475 (508)
T KOG1840|consen 426 EEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEK 475 (508)
T ss_pred chHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 878777776433 121 11 234566666666666777666666553
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.06 E-value=4.2e-07 Score=76.25 Aligned_cols=208 Identities=15% Similarity=0.054 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 011081 248 HTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGF 327 (494)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 327 (494)
.+...|.-+|.+.|+...|..-+++.++.. +.+..+|..+...|-+.|+.+.|.+-|+...... +-+..+.|....-+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 445667789999999999999999999875 4456788999999999999999999999988874 45778899999999
Q ss_pred HccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011081 328 CEIGEMARAEEFFREMGLSG-VESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEA 406 (494)
Q Consensus 328 ~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 406 (494)
|..|++++|...|++....- ..--..+|..+.-+..+.|+.+.|...|++.++.+. -...+...+.......|++..|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHH
Confidence 99999999999999988752 222346788888888899999999999999988753 3456677888888899999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011081 407 LDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYS 462 (494)
Q Consensus 407 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 462 (494)
..+++. ....+ .++..+...-|..--+.|+-+.+-++=.++.+. -|...-|.
T Consensus 193 r~~~~~-~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q 244 (250)
T COG3063 193 RLYLER-YQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQ 244 (250)
T ss_pred HHHHHH-HHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHH
Confidence 988873 43333 388888888888888899998888887777654 45544443
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.05 E-value=3.3e-07 Score=76.87 Aligned_cols=193 Identities=12% Similarity=0.040 Sum_probs=151.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 011081 199 CNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGC 278 (494)
Q Consensus 199 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 278 (494)
...|.-.|...|+...|.+-+++.++.+|. +..+|..+...|.+.|+.+.|.+.|++.....
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-----------------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~- 99 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-----------------YYLAHLVRAHYYQKLGENDLADESYRKALSLA- 99 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-----------------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-
Confidence 445667788889999999999998887765 77888888889999999999999998887764
Q ss_pred CcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 011081 279 EPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKN-VEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEH 357 (494)
Q Consensus 279 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 357 (494)
+-+..+.|.....+|..|++++|...|++....- ..--..+|..+.-+..+.|+++.|.+.|++..+.. +-...+.-.
T Consensus 100 p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~ 178 (250)
T COG3063 100 PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLE 178 (250)
T ss_pred CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHH
Confidence 3456677888888888999999999998887642 12235578888888888999999999999888765 444566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011081 358 LVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILK 411 (494)
Q Consensus 358 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 411 (494)
+.....+.|++-.|...++.....+. ++..+.-..|..--..|+.+.+-++=.
T Consensus 179 ~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~ 231 (250)
T COG3063 179 LARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQA 231 (250)
T ss_pred HHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 88888888999999988888877764 777777777777777888777766533
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.9e-06 Score=78.33 Aligned_cols=273 Identities=9% Similarity=0.045 Sum_probs=204.4
Q ss_pred cCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccc
Q 011081 154 CGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGI 233 (494)
Q Consensus 154 ~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 233 (494)
...+......+.+++...|+ .++|+..|+.....++. ++.......-.+.+.|+.++...+...++....
T Consensus 228 lr~NvhLl~~lak~~~~~Gd---n~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~------ 297 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGD---YFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK------ 297 (564)
T ss_pred CCccHHHHHHHhhhhhhhcC---chHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh------
Confidence 44566778888899999999 99999999988764322 223333334455778888888888888766432
Q ss_pred ccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011081 234 GKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNV 313 (494)
Q Consensus 234 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 313 (494)
-+...|-.-........+++.|+.+-++.++.. +.+...|-.-...+...|+.++|.-.|...+...
T Consensus 298 -----------~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La- 364 (564)
T KOG1174|consen 298 -----------YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA- 364 (564)
T ss_pred -----------cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-
Confidence 255666666677778889999999999888764 3455566666678888999999999999988763
Q ss_pred CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHHCCCCCC-hhhH
Q 011081 314 EHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLV-NGYCR-AGDVDSAILVYNDMCRKGFEPE-GSTI 390 (494)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li-~~~~~-~g~~~~a~~~~~~m~~~~~~p~-~~~~ 390 (494)
+.+...|.-|+.+|...|++.+|..+-+..... ++.+..+.+.+. ..|.- -.--++|.++++.-++. .|+ ....
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV 441 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAV 441 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHH
Confidence 457889999999999999999988776665443 234455555442 22222 22347899999887765 454 3456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011081 391 EVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS 457 (494)
Q Consensus 391 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 457 (494)
+.+...+...|..+.++.++++.+.. .||....+.|.+.+...+.+++|+..|...++. .|+
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~---~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--dP~ 503 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLII---FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--DPK 503 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHhh---ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--Ccc
Confidence 77778888999999999999987765 489999999999999999999999999998854 554
No 76
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.00 E-value=1e-05 Score=77.76 Aligned_cols=146 Identities=18% Similarity=0.202 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHH
Q 011081 107 SYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRM 186 (494)
Q Consensus 107 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~ 186 (494)
.|-.-+..+.+.+++..-+..|+.++..-.... ...+|...++-....+- ++.++.++++
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtq-----------------H~rIW~lyl~Fv~~~~l---Pets~rvyrR 163 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQ-----------------HDRIWDLYLKFVESHGL---PETSIRVYRR 163 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHh-----------------hccchHHHHHHHHhCCC---hHHHHHHHHH
Confidence 444445555555655555555555544221111 12344444444444444 5566666666
Q ss_pred HHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccc-cc---------------------ccc----ccccc
Q 011081 187 LMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDAT-AG---------------------IGK----DVKRV 240 (494)
Q Consensus 187 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~---------------------~~~----~~~~~ 240 (494)
.++. ++..-+-.+.-+++.+++++|.+.+...+..+.... .| ... -.+..
T Consensus 164 YLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~g 239 (835)
T KOG2047|consen 164 YLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGG 239 (835)
T ss_pred HHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhh
Confidence 6542 233344555555666666666666555543321100 00 000 01111
Q ss_pred cccccC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 011081 241 VRVRPN--VHTFNALMVGFYREGAFEKVEDVWVEMARL 276 (494)
Q Consensus 241 ~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 276 (494)
.+.-+| ...|++|.+-|.+.|.+++|.++|++....
T Consensus 240 i~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 240 IRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred cccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 222334 356999999999999999999999987654
No 77
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.98 E-value=9.3e-06 Score=77.68 Aligned_cols=261 Identities=12% Similarity=0.035 Sum_probs=159.9
Q ss_pred HHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHH----cCCChhHHHHHHHHHhcCCcccccccccccccccc
Q 011081 167 CCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVS----RGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVR 242 (494)
Q Consensus 167 ~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (494)
.+...|+ +++|.+.+++..+.... +...+.. ...+. ..+....+.+.+.....
T Consensus 52 ~~~~~g~---~~~A~~~~~~~l~~~P~-~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~------------------ 108 (355)
T cd05804 52 SAWIAGD---LPKALALLEQLLDDYPR-DLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAP------------------ 108 (355)
T ss_pred HHHHcCC---HHHHHHHHHHHHHHCCC-cHHHHHH-hHHHHHhcccccCchhHHHHHhccCc------------------
Confidence 4556778 99999999998876432 4444442 22222 23444555555443211
Q ss_pred ccc-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH--h
Q 011081 243 VRP-NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNV-EHDV--V 318 (494)
Q Consensus 243 ~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~--~ 318 (494)
..| .......+...+...|++++|...+++..+.. +.+...+..+...+...|++++|..+++....... .++. .
T Consensus 109 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~ 187 (355)
T cd05804 109 ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGH 187 (355)
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHH
Confidence 133 34455566778899999999999999999875 44567788899999999999999999998876532 1222 3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHHHHCCCC--CChhhH
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLSGV-ESSSVTF-E--HLVNGYCRAGDVDSAILV--YNDMCRKGFE--PEGSTI 390 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~-~--~li~~~~~~g~~~~a~~~--~~~m~~~~~~--p~~~~~ 390 (494)
.|..+...+...|++++|..+|++...... .+..... + .++.-+...|..+.+.++ .......... ......
T Consensus 188 ~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 267 (355)
T cd05804 188 NWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFND 267 (355)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHH
Confidence 466788899999999999999999864321 1222111 1 233334444543333333 1111111111 111222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 391 EVLIGELCDKRRVFEALDILKARVVKFGLF------P--TEKSYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 391 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~------p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
.....++...|+.++|...+... ...... . .....-....++...|+.++|.+.+......
T Consensus 268 ~~~a~~~~~~~~~~~a~~~L~~l-~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 268 LHAALALAGAGDKDALDKLLAAL-KGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHH-HHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 24566778899999999998843 321111 0 1112222233456889999999999887643
No 78
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=1.3e-05 Score=71.57 Aligned_cols=374 Identities=12% Similarity=0.055 Sum_probs=209.9
Q ss_pred hhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhh-hcC---
Q 011081 80 GLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYR-ECG--- 155 (494)
Q Consensus 80 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~--- 155 (494)
...++.+.|+..+..+.... .++...+..+.-..--.|.+.+|..+-....+.+ +...++--.+ +.+
T Consensus 68 fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~p-------L~~RLlfhlahklndEk 138 (557)
T KOG3785|consen 68 FHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTP-------LCIRLLFHLAHKLNDEK 138 (557)
T ss_pred HhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCCh-------HHHHHHHHHHHHhCcHH
Confidence 34578889999888876544 3444555544444444577777777655433321 1111111000 011
Q ss_pred ----------CC-hhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHH-HHHHcCCChhHHHHHHHHHh
Q 011081 156 ----------SA-PFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALI-WEVSRGKGVISGYEIYREVF 223 (494)
Q Consensus 156 ----------~~-~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~ 223 (494)
.. ..-....---|.+.. +++|++++.+....+ |+-...|.-+ -+|.+..-++-+.++++.-+
T Consensus 139 ~~~~fh~~LqD~~EdqLSLAsvhYmR~H----YQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 139 RILTFHSSLQDTLEDQLSLASVHYMRMH----YQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHHHHHHHhhhHHHHHhHHHHHHHHHH----HHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 10 111112222344443 889999998887643 3444445433 35667777788888777765
Q ss_pred cCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-------------------------
Q 011081 224 GLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGC------------------------- 278 (494)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~------------------------- 278 (494)
..-++ +..+-|.......+.=+-..|++-..++.+.+-
T Consensus 213 ~q~pd-----------------StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALq 275 (557)
T KOG3785|consen 213 RQFPD-----------------STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQ 275 (557)
T ss_pred HhCCC-----------------cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHH
Confidence 54332 455555554444443222222222222222110
Q ss_pred -CcC-----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH-----HHccCCHHHHHHHHHHHHhCC
Q 011081 279 -EPD-----CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG-----FCEIGEMARAEEFFREMGLSG 347 (494)
Q Consensus 279 -~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~~ 347 (494)
-|. ...--.|+--|.+.++..+|..+.+++.-. .|-......+..+ ........-|.+.|+-.-+++
T Consensus 276 VLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa 353 (557)
T KOG3785|consen 276 VLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESA 353 (557)
T ss_pred hchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccc
Confidence 010 011223444577788888887766655421 2222222222221 111223455666676665555
Q ss_pred CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHH
Q 011081 348 VESSSVT-FEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSY 426 (494)
Q Consensus 348 ~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 426 (494)
..-|... -.++...+.-..++++.+..++.....=.. |...-..+.++.+..|.+.+|.++|- .+....+ .|..+|
T Consensus 354 ~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~-~is~~~i-kn~~~Y 430 (557)
T KOG3785|consen 354 LECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFI-RISGPEI-KNKILY 430 (557)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHh-hhcChhh-hhhHHH
Confidence 4444322 344555556666788888888887665333 33334457788999999999999986 3333222 355566
Q ss_pred H-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHccccccC
Q 011081 427 M-FLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFI-DGYMKEGNVEMATMLRKEMFENQVRQED 493 (494)
Q Consensus 427 ~-~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~~~~pd~ 493 (494)
. .|.++|.+++..+.|++++-.+ .-+-+..+.-.+| .-|.+.+.+--|-+.|+++...+|.|..
T Consensus 431 ~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEn 496 (557)
T KOG3785|consen 431 KSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPEN 496 (557)
T ss_pred HHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccc
Confidence 5 4567889999999998887666 3333455555554 4688889999999999999999998865
No 79
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.88 E-value=5.4e-05 Score=72.90 Aligned_cols=225 Identities=14% Similarity=0.123 Sum_probs=146.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-hHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDV-VAYNTII 324 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li 324 (494)
+...|...++.--..|-++....+|+++.+..+.-.... ......+-...-++++.++|++-+..=-.|++ ..|+..+
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii-~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYL 554 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII-INYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYL 554 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence 455566667766677889999999999988764422222 22222344556678888888776554323443 4677777
Q ss_pred HHHHc---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHH
Q 011081 325 GGFCE---IGEMARAEEFFREMGLSGVESSSVTFEHLVN--GYCRAGDVDSAILVYNDMCRKGFEPE--GSTIEVLIGEL 397 (494)
Q Consensus 325 ~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~ 397 (494)
.-+.+ ..+++.|..+|++.++ |.+|...-+.-|+. .--+.|-...|+.++++... ++++. ...||..|.-.
T Consensus 555 tkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~ka 632 (835)
T KOG2047|consen 555 TKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKA 632 (835)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 66654 3468999999999998 55654433322222 22345888889999999754 34443 34678877666
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC
Q 011081 398 CDKRRVFEALDILKARVVKFGLFPTEKSYMF---LIKGLCEEGKMEEALKVQAEMVGK-GFEPSLEIYSAFIDGYMKEGN 473 (494)
Q Consensus 398 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~ 473 (494)
...=.+.....+|++.++. -|+...-.. ....=++.|.++.|..++..-.+- .-..+..-|.+.=.-=.++|+
T Consensus 633 ae~yGv~~TR~iYekaIe~---Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 633 AEIYGVPRTREIYEKAIES---LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHhCCcccHHHHHHHHHh---CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 6555555666777766655 356544332 334456789999999999887654 223356778888777889998
Q ss_pred HHH
Q 011081 474 VEM 476 (494)
Q Consensus 474 ~~~ 476 (494)
-+-
T Consensus 710 edT 712 (835)
T KOG2047|consen 710 EDT 712 (835)
T ss_pred HHH
Confidence 443
No 80
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.83 E-value=4.6e-05 Score=71.98 Aligned_cols=151 Identities=13% Similarity=0.164 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHH
Q 011081 333 MARAEEFFREMGLS-GVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEP-EGSTIEVLIGELCDKRRVFEALDIL 410 (494)
Q Consensus 333 ~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~ 410 (494)
.+.....++++... .+.|+ .+|...+..-.+..-++.|..+|.+..+.+..+ ++.+.++++..+| .++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 55566666666554 33343 567778888888888999999999999988777 7778888888776 67888999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011081 411 KARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS--LEIYSAFIDGYMKEGNVEMATMLRKEMFEN 487 (494)
Q Consensus 411 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 487 (494)
+--+++.|-. ..-....++-+...++-..|..+|++.+..++.|| ..+|..+|.-=..-|+...+.++-+++...
T Consensus 425 eLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 425 ELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 9888887643 34446788888999999999999999999877766 689999999999999999999998887664
No 81
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.82 E-value=4.3e-07 Score=82.73 Aligned_cols=228 Identities=14% Similarity=0.086 Sum_probs=146.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHhHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVE-HDVVAYNTII 324 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li 324 (494)
+......+.+++...|+++.++ .+..... .|.......+...+...++-+.+..-+++....+.. .+........
T Consensus 34 ~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A 109 (290)
T PF04733_consen 34 KLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAA 109 (290)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 4555566778888888876544 4443333 666666655554444434555555555444333322 2333333334
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----c
Q 011081 325 GGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCD----K 400 (494)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~ 400 (494)
..+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+.+ +..+...+..++.. .
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCc
Confidence 5667789999998887542 355666778888999999999999999997653 33444445444433 3
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHH
Q 011081 401 RRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNV-EMATM 479 (494)
Q Consensus 401 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~ 479 (494)
+.+.+|..+|++... ...++..+.+.+..++...|++++|.+++.+..+.. +-+..+...+|-+....|+. +.+.+
T Consensus 181 e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~ 257 (290)
T PF04733_consen 181 EKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAER 257 (290)
T ss_dssp TCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred hhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHH
Confidence 468899999986433 345788888888889999999999999999887653 33567777788877888877 67778
Q ss_pred HHHHHHHccc
Q 011081 480 LRKEMFENQV 489 (494)
Q Consensus 480 ~~~~m~~~~~ 489 (494)
++.++....+
T Consensus 258 ~l~qL~~~~p 267 (290)
T PF04733_consen 258 YLSQLKQSNP 267 (290)
T ss_dssp HHHHCHHHTT
T ss_pred HHHHHHHhCC
Confidence 8888876544
No 82
>PF12854 PPR_1: PPR repeat
Probab=98.80 E-value=7.3e-09 Score=60.24 Aligned_cols=32 Identities=50% Similarity=0.906 Sum_probs=14.3
Q ss_pred CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 011081 312 NVEHDVVAYNTIIGGFCEIGEMARAEEFFREM 343 (494)
Q Consensus 312 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 343 (494)
|+.||..+||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 33444444444444444444444444444443
No 83
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=0.00011 Score=74.43 Aligned_cols=319 Identities=14% Similarity=0.170 Sum_probs=190.0
Q ss_pred CCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCC-CCCChHHHHHHHHHHhhhcCCChh-h-------H--HHHHHHHHhc
Q 011081 103 HSLSSYATIIHILSRARLIGPARDVIRVALRSP-ENDPKLKLFEVLVKTYRECGSAPF-V-------F--DLLIKCCLEV 171 (494)
Q Consensus 103 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~-~-------~--~~li~~~~~~ 171 (494)
.|+..-+..+.++..++...+.+++++.++-.+ .+.....+-+-++-.--+..++.+ - | ..+...+..+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~ 1061 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIEN 1061 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhh
Confidence 355666677888888888888889888876543 233333333333322222222111 0 1 1233444455
Q ss_pred CChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHH
Q 011081 172 KNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFN 251 (494)
Q Consensus 172 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 251 (494)
+- +++|+.+|+.. ..+..+.+.|+.- -+..++|.+.-++.- ....|.
T Consensus 1062 ~L---yEEAF~ifkkf-----~~n~~A~~VLie~---i~~ldRA~efAe~~n----------------------~p~vWs 1108 (1666)
T KOG0985|consen 1062 QL---YEEAFAIFKKF-----DMNVSAIQVLIEN---IGSLDRAYEFAERCN----------------------EPAVWS 1108 (1666)
T ss_pred hH---HHHHHHHHHHh-----cccHHHHHHHHHH---hhhHHHHHHHHHhhC----------------------ChHHHH
Confidence 55 78888888754 2355555555543 345667766655541 356789
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC
Q 011081 252 ALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIG 331 (494)
Q Consensus 252 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 331 (494)
.+..+-.+.|...+|++-|-+. -|...|..+++...+.|.|++-.+++...++..-+|.+. +.||-+|++.+
T Consensus 1109 qlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~ 1180 (1666)
T KOG0985|consen 1109 QLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTN 1180 (1666)
T ss_pred HHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhc
Confidence 9999999999999998877443 367789999999999999999999888887776555544 57888999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011081 332 EMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILK 411 (494)
Q Consensus 332 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 411 (494)
+..+.++++ .-|+......+.+-|...|.++.|.-+|... .-|..|...+...|++..|.+.-+
T Consensus 1181 rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1181 RLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred hHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 887766554 2567777777777777777777776666543 223444444445555554444322
Q ss_pred H-----------------------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 011081 412 A-----------------------RVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEP-SLEIYSAFIDG 467 (494)
Q Consensus 412 ~-----------------------~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~ 467 (494)
+ .|-..++-....-..-++..|-..|-+++.+.+++..+ |+.. -...|+.|.-.
T Consensus 1245 KAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiL 1322 (1666)
T KOG0985|consen 1245 KANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAIL 1322 (1666)
T ss_pred hccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHH
Confidence 1 01111112222334455556666666666666555544 3322 23345555555
Q ss_pred HHhcCCHHHHHHHH
Q 011081 468 YMKEGNVEMATMLR 481 (494)
Q Consensus 468 ~~~~g~~~~a~~~~ 481 (494)
|.+- +.++.++-+
T Consensus 1323 Ysky-kp~km~EHl 1335 (1666)
T KOG0985|consen 1323 YSKY-KPEKMMEHL 1335 (1666)
T ss_pred HHhc-CHHHHHHHH
Confidence 5443 233433333
No 84
>PF12854 PPR_1: PPR repeat
Probab=98.76 E-value=1e-08 Score=59.67 Aligned_cols=32 Identities=28% Similarity=0.619 Sum_probs=24.0
Q ss_pred ccccCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 011081 242 RVRPNVHTFNALMVGFYREGAFEKVEDVWVEM 273 (494)
Q Consensus 242 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 273 (494)
|+.||..|||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 46777777777777777777777777777776
No 85
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.75 E-value=2.6e-06 Score=88.32 Aligned_cols=234 Identities=7% Similarity=0.017 Sum_probs=149.9
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-CCCc---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARL-GCEP---DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYN 321 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 321 (494)
....|-..|....+.++.++|.++.++.+.. ++.- -...|.++++.-.-.|.-+...++|+++.+. ...-.+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 3455777777777777777777777776543 1111 1235666666666666667777777777765 22345677
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhc
Q 011081 322 TIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEP-EGSTIEVLIGELCDK 400 (494)
Q Consensus 322 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~ 400 (494)
.|...|.+.+++++|.++|+.|.++= .-....|...+..+.+..+-+.|..++.+.++.=.+- ........+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 77777777777777777777777652 2455677777777777777777777777776642111 223344445555667
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 011081 401 RRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS--LEIYSAFIDGYMKEGNVEMAT 478 (494)
Q Consensus 401 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~ 478 (494)
|+.+.+..+|+..+..+.- ....|+.+|+.=.++|+.+.+..+|++.+..++.|- -..|...+..=-.+|+-+.+.
T Consensus 1614 GDaeRGRtlfEgll~ayPK--RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPK--RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred CCchhhHHHHHHHHhhCcc--chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 7777777777766655432 344577777777777777777777777777766654 345666666555666655555
Q ss_pred HHHHHH
Q 011081 479 MLRKEM 484 (494)
Q Consensus 479 ~~~~~m 484 (494)
.+=.+.
T Consensus 1692 ~VKarA 1697 (1710)
T KOG1070|consen 1692 YVKARA 1697 (1710)
T ss_pred HHHHHH
Confidence 544333
No 86
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.74 E-value=0.00018 Score=69.62 Aligned_cols=285 Identities=13% Similarity=0.129 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHH--
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALM-- 254 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li-- 254 (494)
++...+....+.+.... ....|..+..++.-.|+...|..+.++..+... ..|+...+....
T Consensus 125 ~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~---------------~~~s~~~~e~se~~ 188 (700)
T KOG1156|consen 125 YEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQN---------------TSPSKEDYEHSELL 188 (700)
T ss_pred hhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------------cCCCHHHHHHHHHH
Confidence 55555555444443221 334566666666666777777777776654321 134444433222
Q ss_pred ----HHHHhcCCHhHHHHHHHHHHHcCCCcCHhHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHH-HHHH
Q 011081 255 ----VGFYREGAFEKVEDVWVEMARLGCEPDCYSY-SVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTII-GGFC 328 (494)
Q Consensus 255 ----~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li-~~~~ 328 (494)
....+.|.+++|.+.+..-... ..|...+ ..-...+.+.+++++|..+|..++.. .||..-|+-.. .++.
T Consensus 189 Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 189 LYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALG 264 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHH
Confidence 3344566666666666544322 2232222 34455677788888888888888877 45555554443 3443
Q ss_pred ccCCHHHHH-HHHHHHHhC---CCCCCH----------------------------HHHHHHHHHHHhcCCHHHHHHHHH
Q 011081 329 EIGEMARAE-EFFREMGLS---GVESSS----------------------------VTFEHLVNGYCRAGDVDSAILVYN 376 (494)
Q Consensus 329 ~~g~~~~A~-~~~~~m~~~---~~~~~~----------------------------~~~~~li~~~~~~g~~~~a~~~~~ 376 (494)
+-.+.-+++ .+|....+. .-.|-. .++..+...|-. .+++- +++
T Consensus 265 k~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~---p~k~~-~le 340 (700)
T KOG1156|consen 265 KIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKD---PEKVA-FLE 340 (700)
T ss_pred HHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhc---hhHhH-HHH
Confidence 333333333 444444322 001100 011111111111 11111 222
Q ss_pred HHHH------CCC------------CCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHh
Q 011081 377 DMCR------KGF------------EPEGS--TIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEK-SYMFLIKGLCE 435 (494)
Q Consensus 377 ~m~~------~~~------------~p~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~ 435 (494)
++.. .|. +|... ++..++..+-..|+++.|..+++..+.. .|+.. -|-.=.+.+..
T Consensus 341 ~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH---TPTliEly~~KaRI~kH 417 (700)
T KOG1156|consen 341 KLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH---TPTLIELYLVKARIFKH 417 (700)
T ss_pred HHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc---CchHHHHHHHHHHHHHh
Confidence 2211 011 23322 3334556666677777777777654433 24432 34444456666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 436 EGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 436 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
.|++++|..++++..+.. .+|..+-..-..-..+..+.++|.+++......|.
T Consensus 418 ~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 418 AGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred cCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 777777777777776543 44554444455555666777777777766666553
No 87
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.74 E-value=0.00011 Score=79.55 Aligned_cols=309 Identities=9% Similarity=-0.056 Sum_probs=194.3
Q ss_pred HHHHHHhcCChhcHHHHHHHHHHHHhCCC------CcCh--HhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccc
Q 011081 164 LIKCCLEVKNIEKIETCVDIVRMLMSRGL------SVKV--STCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGK 235 (494)
Q Consensus 164 li~~~~~~~~~~~~~~a~~~~~~m~~~g~------~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 235 (494)
....+...|+ ++++...+....+.-- .+.. .....+...+...|+++.|...+++.....+.
T Consensus 415 ~a~~~~~~g~---~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~------- 484 (903)
T PRK04841 415 QAWLAQSQHR---YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL------- 484 (903)
T ss_pred HHHHHHHCCC---HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-------
Confidence 3444556677 8888888877654211 1111 11222334456788999999999887653221
Q ss_pred ccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC---Cc--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 236 DVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGC---EP--DCYSYSVLMAVFCEERRMREAEKLWEEMRD 310 (494)
Q Consensus 236 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 310 (494)
.....-...++.+...+...|++++|...+.+.....- .+ ...++..+...+...|+++.|...+++...
T Consensus 485 -----~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 559 (903)
T PRK04841 485 -----TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQ 559 (903)
T ss_pred -----ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 00000123456677778889999999999988865311 11 123455667778889999999999887654
Q ss_pred ----CCCC--C-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 311 ----KNVE--H-DVVAYNTIIGGFCEIGEMARAEEFFREMGLSG--VES--SSVTFEHLVNGYCRAGDVDSAILVYNDMC 379 (494)
Q Consensus 311 ----~g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 379 (494)
.|.. + ....+..+...+...|++++|...+++..... ..+ ....+..+...+...|+.++|.+.++...
T Consensus 560 ~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~ 639 (903)
T PRK04841 560 LIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLE 639 (903)
T ss_pred HHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2211 1 23345566677788899999999998875531 112 23344556667888999999999998875
Q ss_pred HCCCCC-ChhhH-----HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 380 RKGFEP-EGSTI-----EVLIGELCDKRRVFEALDILKARVVKFGLFPT---EKSYMFLIKGLCEEGKMEEALKVQAEMV 450 (494)
Q Consensus 380 ~~~~~p-~~~~~-----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (494)
...-.. ....+ ...+..+...|+.+.|.+.+...... ..... ...+..+..++...|+.++|..++++..
T Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al 718 (903)
T PRK04841 640 NLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELN 718 (903)
T ss_pred HHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 421110 11111 11224445688999998887643221 11111 1113456677888999999999999887
Q ss_pred hC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc
Q 011081 451 GK----GFEPS-LEIYSAFIDGYMKEGNVEMATMLRKEMFENQ 488 (494)
Q Consensus 451 ~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 488 (494)
.. |..++ ..+...+..++.+.|+.++|...+.+..+..
T Consensus 719 ~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 719 ENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 53 33322 3456666778889999999999999988754
No 88
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.72 E-value=1.2e-05 Score=83.76 Aligned_cols=207 Identities=14% Similarity=0.125 Sum_probs=170.6
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC---CCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011081 281 DCYSYSVLMAVFCEERRMREAEKLWEEMRDK-NVE---HDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFE 356 (494)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 356 (494)
....|-..|......+++++|+++.++.+.. ++. --...|.++++.-..-|.-+...++|+++.+.. -....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 4567888888999999999999999998754 111 124568888888778888889999999998753 2346788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011081 357 HLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEE 436 (494)
Q Consensus 357 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 436 (494)
.|...|.+.+.+++|.++|+.|.+. +......|...+..+.++++-+.|..++.+.++...-.-......-.+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 9999999999999999999999986 335778899999999999999999999998887653323344555666677789
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccccc
Q 011081 437 GKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVRQ 491 (494)
Q Consensus 437 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 491 (494)
|+.+++..+|+..+.. .+-....|+.+|+.-.++|+.+.++.+|++.+..+..|
T Consensus 1614 GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred CCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 9999999999999875 34467899999999999999999999999999988765
No 89
>PLN02789 farnesyltranstransferase
Probab=98.71 E-value=1.9e-05 Score=73.07 Aligned_cols=201 Identities=9% Similarity=0.027 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCC-ChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHH
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGK-GVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMV 255 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~ 255 (494)
.++|+.+...+++.... +..+|+....++...| .+++++..++++...++. +..+|+....
T Consensus 53 serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-----------------nyqaW~~R~~ 114 (320)
T PLN02789 53 SPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-----------------NYQIWHHRRW 114 (320)
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-----------------chHHhHHHHH
Confidence 77888888888775433 4455666666666666 568888888888776543 6667776655
Q ss_pred HHHhcCCH--hHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcc---
Q 011081 256 GFYREGAF--EKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEI--- 330 (494)
Q Consensus 256 ~~~~~g~~--~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--- 330 (494)
.+.+.|+. ++++.+++++.+.. +-|..+|+...-++.+.|+++++++.++++++.+ ..|..+|+.....+.+.
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLL 192 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhcccc
Confidence 55566653 56777887877765 4467778877778888888888888888888775 34666777766665544
Q ss_pred CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 011081 331 GEM----ARAEEFFREMGLSGVESSSVTFEHLVNGYCRA----GDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCD 399 (494)
Q Consensus 331 g~~----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 399 (494)
|.. ++++++..++.... +-|...|+-+...+... ++..+|...+.+..+.+ ..+...+..|+..|+.
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 222 45666665666553 55667777777766662 33455777776665543 2244555666666653
No 90
>PLN02789 farnesyltranstransferase
Probab=98.71 E-value=3.4e-05 Score=71.39 Aligned_cols=233 Identities=10% Similarity=0.056 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011081 248 HTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEER-RMREAEKLWEEMRDKNVEHDVVAYNTIIGG 326 (494)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 326 (494)
.++..+-..+...++.++|+.+..++++.. +-+..+|+.--..+.+.| ++++++..++.+.+.. +.+..+|+.-...
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 445555566667788999999999998764 334456666666666777 6799999999998775 4466678766666
Q ss_pred HHccCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---C
Q 011081 327 FCEIGEM--ARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDK---R 401 (494)
Q Consensus 327 ~~~~g~~--~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---~ 401 (494)
+.+.|+. ++++.+++++.+.+ +-+..+|+...-.+...|+++++++.++++++.+.. |...|+.....+.+. |
T Consensus 116 l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccc
Confidence 6666653 67889998998876 678889999999999999999999999999998744 566776666555544 2
Q ss_pred CH----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-
Q 011081 402 RV----FEALDILKARVVKFGLFPTEKSYMFLIKGLCEE----GKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEG- 472 (494)
Q Consensus 402 ~~----~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g- 472 (494)
.. ++.+++..+.+... +-|...|+-+...+... ++..+|.+.+.+..+.+ ..+......|++.|+...
T Consensus 194 ~~~~~~e~el~y~~~aI~~~--P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~ 270 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILAN--PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQ 270 (320)
T ss_pred cccccHHHHHHHHHHHHHhC--CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhc
Confidence 22 45666666566554 23455677676666662 44567888888877543 336777888888887642
Q ss_pred -----------------CHHHHHHHHHHHHHc
Q 011081 473 -----------------NVEMATMLRKEMFEN 487 (494)
Q Consensus 473 -----------------~~~~a~~~~~~m~~~ 487 (494)
..++|.++++.+.+.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~ 302 (320)
T PLN02789 271 PTAEFRDTVDTLAEELSDSTLAQAVCSELEVA 302 (320)
T ss_pred cchhhhhhhhccccccccHHHHHHHHHHHHhh
Confidence 346788888888443
No 91
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=1e-05 Score=78.92 Aligned_cols=189 Identities=12% Similarity=0.102 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 011081 249 TFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFC 328 (494)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 328 (494)
.|.-+|.+|+..|+..+|..+..+..++ +||...|..+.+......-+++|.++.+..-.. +-..+.....
T Consensus 426 mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~ 496 (777)
T KOG1128|consen 426 MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLIL 496 (777)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccc
Confidence 3455555555555555555555555442 455555555555544444455555554433221 0011111111
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011081 329 EIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALD 408 (494)
Q Consensus 329 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 408 (494)
+.++++++.+.|+.-.+.. +....+|-.+..+..+.++++.|.+.|..-..-. +-+...||.+-.+|.+.++-.+|..
T Consensus 497 ~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~ 574 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFR 574 (777)
T ss_pred cchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHH
Confidence 2444555555554443332 2333444444444444555555555554443321 1123345555555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 409 ILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMV 450 (494)
Q Consensus 409 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (494)
.+.+.++-. .-+...|...+....+.|.+++|++.+.++.
T Consensus 575 ~l~EAlKcn--~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 575 KLKEALKCN--YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHhhcC--CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 554433322 1122233333444444555555555555444
No 92
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=6.1e-05 Score=67.38 Aligned_cols=55 Identities=15% Similarity=0.214 Sum_probs=40.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHH
Q 011081 428 FLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSA-FIDGYMKEGNVEMATMLRKE 483 (494)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~ 483 (494)
.+..+++..|.+.+|.++|-+.....++ |..+|.+ |.++|.+.|+.+.|..++-+
T Consensus 398 N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLK 453 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence 3667888889999999999888754444 4555654 55688999999888877544
No 93
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=4.9e-06 Score=79.02 Aligned_cols=218 Identities=14% Similarity=0.103 Sum_probs=109.2
Q ss_pred HhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHH
Q 011081 169 LEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVH 248 (494)
Q Consensus 169 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 248 (494)
.++|+ +.+|.-.|+..++..+. +...|.-|...-...++-..|...+++.++.+|. |..
T Consensus 296 m~nG~---L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-----------------Nle 354 (579)
T KOG1125|consen 296 MKNGD---LSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-----------------NLE 354 (579)
T ss_pred HhcCC---chHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-----------------cHH
Confidence 44555 66666666666554433 5555666665555555555666666666555543 555
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC--------cCHhHHHHHHHHHHhcCCHHHHHHHHHHH-HhCCCCCCHhH
Q 011081 249 TFNALMVGFYREGAFEKVEDVWVEMARLGCE--------PDCYSYSVLMAVFCEERRMREAEKLWEEM-RDKNVEHDVVA 319 (494)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~g~~~~~~~ 319 (494)
..-+|.-.|...|.-.+|+..++..+....+ ++...-.. ..+.....+....++|-++ .+.+..+|..+
T Consensus 355 aLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpdv 432 (579)
T KOG1125|consen 355 ALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDV 432 (579)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhH
Confidence 5556666666666666666666555433200 00000000 0111111222333333333 33333355555
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHH
Q 011081 320 YNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPE-GSTIEVLIGELC 398 (494)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~ 398 (494)
+..|.-.|.-.|++++|.+.|+..+... +-|...||-|...++...+.++|+..|.+.++. +|. +.+...|.-.|.
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~m 509 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCM 509 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhh
Confidence 5555555556666666666666655543 345555666666666666666666666665553 332 122233333455
Q ss_pred hcCCHHHHHHHHHH
Q 011081 399 DKRRVFEALDILKA 412 (494)
Q Consensus 399 ~~~~~~~a~~~~~~ 412 (494)
..|.+++|.+.|-.
T Consensus 510 NlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 510 NLGAYKEAVKHLLE 523 (579)
T ss_pred hhhhHHHHHHHHHH
Confidence 55666665555543
No 94
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.68 E-value=7.6e-06 Score=73.17 Aligned_cols=188 Identities=12% Similarity=0.065 Sum_probs=129.8
Q ss_pred cCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CC-HHH
Q 011081 280 PDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD---VVAYNTIIGGFCEIGEMARAEEFFREMGLSGVE-SS-SVT 354 (494)
Q Consensus 280 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~-~~~ 354 (494)
.....+..+...+.+.|++++|...|+++.... +.+ ..++..+..+|.+.|++++|...|+++.+..-. +. ..+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 355677888888999999999999999987763 112 246778889999999999999999999876311 11 124
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHH
Q 011081 355 FEHLVNGYCRA--------GDVDSAILVYNDMCRKGFEPEGS-TIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKS 425 (494)
Q Consensus 355 ~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 425 (494)
+..+..++... |+.++|.+.|+.+.+.. |+.. .+..+... .. ... ... ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~-~~---~~~-------~~~--------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM-DY---LRN-------RLA--------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH-HH---HHH-------HHH--------HH
Confidence 55555556554 67888999999888763 3332 22111111 00 000 000 01
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 426 YMFLIKGLCEEGKMEEALKVQAEMVGKGF-EP-SLEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
...+...+.+.|++++|...+.+..+..- .| ....+..+..++.+.|++++|..+++.+..+.+
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 12456678899999999999999987511 12 357888999999999999999999998877653
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=1.5e-05 Score=69.53 Aligned_cols=313 Identities=15% Similarity=0.116 Sum_probs=159.5
Q ss_pred HHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccc----------
Q 011081 161 FDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDAT---------- 230 (494)
Q Consensus 161 ~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---------- 230 (494)
|.+++..+.+..+ ++.|++++..-.+...+ +......|..+|....++..|.+.|+++...-|...
T Consensus 13 ftaviy~lI~d~r---y~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDAR---YADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhh---HHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Confidence 3334444444445 66666666555554322 445555566666666666666666666643322100
Q ss_pred --ccccccccccccc-ccCHHHHHHHH--HH--HHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHH
Q 011081 231 --AGIGKDVKRVVRV-RPNVHTFNALM--VG--FYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEK 303 (494)
Q Consensus 231 --~~~~~~~~~~~~~-~p~~~~~~~li--~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 303 (494)
.++..++-++... .-+....+..+ .+ ....+++..+..++++....| +..+.+.......+.|+++.|.+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 0000000000000 00011111111 11 112344444444444443222 33444444445567888888888
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH---------------------HHHHHH---
Q 011081 304 LWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSV---------------------TFEHLV--- 359 (494)
Q Consensus 304 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---------------------~~~~li--- 359 (494)
-|+...+.+--.....||.-+..| +.|+++.|+++..++.++|++-.+. .-+.++
T Consensus 166 kFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 888887654334556676655444 5678888888888888888653210 112233
Q ss_pred ----HHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011081 360 ----NGYCRAGDVDSAILVYNDMCRKG-FEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLC 434 (494)
Q Consensus 360 ----~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 434 (494)
..+.+.|+++.|.+.+-+|.-+. -..|.+|...+.-.-. .+++.+..+-+.-.+.... -...||..++-.||
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP--fP~ETFANlLllyC 321 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP--FPPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC--CChHHHHHHHHHHh
Confidence 33456678888888777775422 2446666655543222 2334444444332233322 23467888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Q 011081 435 EEGKMEEALKVQAEMVGKGFE-PSLEIYSAFIDGYMKE-GNVEMATMLRKEMF 485 (494)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~ 485 (494)
++.-++.|-.++.+--..-++ .+...|+ |++++.-. -..++|.+-++.+.
T Consensus 322 KNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 322 KNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred hhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 888888888877654322111 1233333 44444333 45667766655543
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.65 E-value=0.00014 Score=64.99 Aligned_cols=193 Identities=10% Similarity=0.103 Sum_probs=104.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011081 292 FCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSA 371 (494)
Q Consensus 292 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 371 (494)
+...|+...|+.....+++.. +-+...|..-..+|...|++..|+.=++...+.. .-++.++-.+-..+...|+.+.+
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHH
Confidence 444566666666666666542 3355556666666666666666665555544433 23344444555555666666666
Q ss_pred HHHHHHHHHCCCCCChhhHH----H---H------HHHHHhcCCHHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhc
Q 011081 372 ILVYNDMCRKGFEPEGSTIE----V---L------IGELCDKRRVFEALDILKARVVKFGLFP--TEKSYMFLIKGLCEE 436 (494)
Q Consensus 372 ~~~~~~m~~~~~~p~~~~~~----~---l------i~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~ 436 (494)
+...++-++.+ ||....- . + +......+++.++++..+..|+...-.+ ....+..+-.++...
T Consensus 243 L~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 243 LKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred HHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccccc
Confidence 66666655542 3322110 0 0 1223345566666666655554322111 111233344455556
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 437 GKMEEALKVQAEMVGKGFEPS-LEIYSAFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 437 g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
|++.+|++...+.++ +.|| ..++.--..+|.-...+++|+.-|+...+.+..
T Consensus 321 ~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred CCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 677777777777763 3454 666666666777777777777777766665443
No 97
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=0.00027 Score=67.69 Aligned_cols=99 Identities=14% Similarity=0.080 Sum_probs=49.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH-------HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC--
Q 011081 389 TIEVLIGELCDKRRVFEALDILKAR-------VVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK--GFEPS-- 457 (494)
Q Consensus 389 ~~~~li~~~~~~~~~~~a~~~~~~~-------~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~-- 457 (494)
+...++......|+++.|++++... +.+.+..| .+...+...+.+.++.+.|..++.+.++. .-.+.
T Consensus 378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~ 455 (652)
T KOG2376|consen 378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSI 455 (652)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccch
Confidence 4444556666777777777776611 11222223 23444555555655555555555554431 00111
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 458 --LEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 458 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
..++.-+...-.+.|+.++|..+++++.+.++
T Consensus 456 ~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~ 489 (652)
T KOG2376|consen 456 ALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP 489 (652)
T ss_pred HHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC
Confidence 22233333334455777777777777766443
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=8.9e-06 Score=77.31 Aligned_cols=208 Identities=11% Similarity=0.043 Sum_probs=150.8
Q ss_pred CChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccc
Q 011081 156 SAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGK 235 (494)
Q Consensus 156 ~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 235 (494)
....+|-.|...-..+++ -..|+..+++..+.... |..+.-+|.-.|...|.-..|+++++..+...+....-...
T Consensus 317 ~haeAW~~LG~~qaENE~---E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a 392 (579)
T KOG1125|consen 317 QHAEAWQKLGITQAENEN---EQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSA 392 (579)
T ss_pred HHHHHHHHhhhHhhhccc---hHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhcccc
Confidence 345677777777778887 88899999998886544 77888888889999999999999998886544321000000
Q ss_pred ccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH-cCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011081 236 DVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMAR-LGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVE 314 (494)
Q Consensus 236 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 314 (494)
.....++ +. ..+.....+....++|-++.. .+..+|...+..|.-.|--.|++++|...|+..+... +
T Consensus 393 ~~~~~~~--~~--------~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-P 461 (579)
T KOG1125|consen 393 GENEDFE--NT--------KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-P 461 (579)
T ss_pred Ccccccc--CC--------cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-C
Confidence 0000000 00 111222234455666666544 4545788888999999999999999999999998874 4
Q ss_pred CCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 315 HDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESS-SVTFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
-|...||-|...++...+.++|+..|++.++. +|+ +.+...|.-.|...|.+++|.+.|-..+.
T Consensus 462 nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 462 NDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred chHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 57889999999999999999999999999986 454 34556677789999999999998877654
No 99
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.64 E-value=1.3e-06 Score=79.56 Aligned_cols=197 Identities=14% Similarity=0.102 Sum_probs=108.2
Q ss_pred ccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHH
Q 011081 244 RPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEP-DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNT 322 (494)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 322 (494)
.|.......+...+...++-+.++.-+++....+..+ +..........+...|++++|+++++.. .+......
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al 136 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLAL 136 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence 3444444444433333234444444444433332222 2222222234455567777777766532 25566666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 011081 323 IIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCR----AGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELC 398 (494)
Q Consensus 323 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 398 (494)
.+..|.+.++++.|.+.++.|.+.+ .|. +...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..+..
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l 212 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHL 212 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHH
Confidence 7777777888888888887777643 332 33333333322 23577788888886543 4567777777777777
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhC
Q 011081 399 DKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKM-EEALKVQAEMVGK 452 (494)
Q Consensus 399 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~ 452 (494)
..|++++|.+.+.+.+... +-+..+...++.+....|+. +.+.+++.++...
T Consensus 213 ~~~~~~eAe~~L~~al~~~--~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 213 QLGHYEEAEELLEEALEKD--PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HhCCHHHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 7888888888777655432 22344555566666666666 5666777777643
No 100
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.63 E-value=3e-05 Score=79.89 Aligned_cols=170 Identities=12% Similarity=0.112 Sum_probs=109.8
Q ss_pred CCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHH
Q 011081 103 HSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVD 182 (494)
Q Consensus 103 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~ 182 (494)
.+...+..|+..+...+++++|.++.+..++..+.......+..++....+. .+......++.......+ +.....
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~-~~~~~lv~~l~~~~~~~~---~~~ve~ 104 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRP-LNDSNLLNLIDSFSQNLK---WAIVEH 104 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcc-hhhhhhhhhhhhcccccc---hhHHHH
Confidence 3456677788888788888888888887777655555566666654322221 111111244444444444 545555
Q ss_pred HHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCC
Q 011081 183 IVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGA 262 (494)
Q Consensus 183 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 262 (494)
+...|.+.+ -+..++-.+..+|-+.|+.++|..+|+++++.++. |..+.|.+...|... +
T Consensus 105 ~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-----------------n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 105 ICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-----------------NPEIVKKLATSYEEE-D 164 (906)
T ss_pred HHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-----------------cHHHHHHHHHHHHHh-h
Confidence 555555533 24556777788888888888888888888777654 777888888888888 8
Q ss_pred HhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 263 FEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK 311 (494)
Q Consensus 263 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 311 (494)
+++|++++.+.... +...+++..+.++|.++...
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 88888888776653 45555666666666666654
No 101
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.62 E-value=9.2e-06 Score=72.62 Aligned_cols=188 Identities=12% Similarity=0.008 Sum_probs=133.9
Q ss_pred ccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--
Q 011081 244 RPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDC----YSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDV-- 317 (494)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-- 317 (494)
......+..+...+.+.|++++|...|++..... |+. .++..+..++.+.|++++|...++.+.+.......
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 5577888889999999999999999999988763 332 46778889999999999999999999876321111
Q ss_pred hHHHHHHHHHHcc--------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 011081 318 VAYNTIIGGFCEI--------GEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGST 389 (494)
Q Consensus 318 ~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 389 (494)
.++..+..++.+. |++++|.+.|+.+.... +-+...+..+..... .... .. ..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~~------~~--------~~ 168 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRNR------LA--------GK 168 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHHH------HH--------HH
Confidence 2455666666654 78899999999998763 222233322221111 0000 00 01
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 390 IEVLIGELCDKRRVFEALDILKARVVKFGLFP-TEKSYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 390 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
...+...+.+.|++.+|+..+...+....-.| ....+..+..++...|++++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12455668899999999999998777654333 3567888999999999999999999988754
No 102
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=0.00016 Score=68.41 Aligned_cols=198 Identities=17% Similarity=0.127 Sum_probs=125.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH-------H
Q 011081 285 YSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFE-------H 357 (494)
Q Consensus 285 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-------~ 357 (494)
...+.++..+..+++.|.+-+....+.. -+..-++....+|...|.+.+....-....+.|. -...-|+ .
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 3566777778888888888888887764 4555667777788888888877777666665542 2222222 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH-------------------------HHHHHhcCCHHHHHHHHHH
Q 011081 358 LVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVL-------------------------IGELCDKRRVFEALDILKA 412 (494)
Q Consensus 358 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-------------------------i~~~~~~~~~~~a~~~~~~ 412 (494)
+..+|.+.++++.|...|.+.+.....|+...-..- ...+.+.|++..|+..|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 344666778888888888887665444443321111 1445566777777777776
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 413 RVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS-LEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 413 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
+++.. +-|...|....-+|.+.|.+..|++=.+..++. .|+ ...|..=..++....++++|.+.|.+..+.++
T Consensus 384 AIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 384 AIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 55543 345566777777777777777777766666544 333 33444444444455667777777777766554
No 103
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.61 E-value=0.00066 Score=67.14 Aligned_cols=356 Identities=15% Similarity=0.056 Sum_probs=202.8
Q ss_pred CCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHH
Q 011081 102 KHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCV 181 (494)
Q Consensus 102 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~ 181 (494)
.-+...|..+.=++.+.|+++.+.+.|++..... -.....|..+-..+...|. -..|+
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-------------------~~~~e~w~~~als~saag~---~s~Av 377 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-------------------FGEHERWYQLALSYSAAGS---DSKAV 377 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-------------------hhhHHHHHHHHHHHHHhcc---chHHH
Confidence 3466677777777777777877777777765411 1123445555555666666 66777
Q ss_pred HHHHHHHhCCCCcChHh-HHHHHHHHH-cCCChhHHHHHHHHHhcCCcc----------cccccc--c------------
Q 011081 182 DIVRMLMSRGLSVKVST-CNALIWEVS-RGKGVISGYEIYREVFGLDSD----------ATAGIG--K------------ 235 (494)
Q Consensus 182 ~~~~~m~~~g~~~~~~~-~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~----------~~~~~~--~------------ 235 (494)
.+++.-......|+..+ +-..-..|. +.+..+++...-.++.+.... ...|++ .
T Consensus 378 ~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~ 457 (799)
T KOG4162|consen 378 NLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERD 457 (799)
T ss_pred HHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHH
Confidence 77776655433343333 322223333 345566666665555441110 000100 0
Q ss_pred -----------ccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHH
Q 011081 236 -----------DVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKL 304 (494)
Q Consensus 236 -----------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 304 (494)
++-...+-.|++..|-++ -|+..++++.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+
T Consensus 458 ~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 458 ALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 011112223444433333 3556677777777777777765456677777777777777777777777
Q ss_pred HHHHHhCCCCCC-HhHHHHHHHHHHccCCHHHHHHHHHHHH---------------------------------------
Q 011081 305 WEEMRDKNVEHD-VVAYNTIIGGFCEIGEMARAEEFFREMG--------------------------------------- 344 (494)
Q Consensus 305 ~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--------------------------------------- 344 (494)
.+...+. -++ -.....-+..-...++.++++.....+.
T Consensus 536 vd~al~E--~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~s 613 (799)
T KOG4162|consen 536 VDAALEE--FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTS 613 (799)
T ss_pred HHHHHHH--hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhh
Confidence 7765543 112 1100000111111222222222111110
Q ss_pred ------------hCC---------CC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 011081 345 ------------LSG---------VE--SS------SVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIG 395 (494)
Q Consensus 345 ------------~~~---------~~--~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 395 (494)
..| +. |+ ...|......+.+.++.++|...+.+..+.. ......|.....
T Consensus 614 r~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~ 692 (799)
T KOG4162|consen 614 RYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGL 692 (799)
T ss_pred HHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhH
Confidence 000 00 01 1123344556666677777777666665542 234455555556
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011081 396 ELCDKRRVFEALDILKARVVKFGLFPT-EKSYMFLIKGLCEEGKMEEALK--VQAEMVGKGFEPSLEIYSAFIDGYMKEG 472 (494)
Q Consensus 396 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~p~~~~~~~li~~~~~~g 472 (494)
.+...|..++|.+.|...+.- .|+ +.+..++..++.+.|+..-|.. ++..+.+.+ +-+...|..+...+.+.|
T Consensus 693 ~~~~~~~~~EA~~af~~Al~l---dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~G 768 (799)
T KOG4162|consen 693 LLEVKGQLEEAKEAFLVALAL---DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLG 768 (799)
T ss_pred HHHHHHhhHHHHHHHHHHHhc---CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcc
Confidence 677788999999988755533 344 4467888899999998777777 899998764 446899999999999999
Q ss_pred CHHHHHHHHHHHHHcc
Q 011081 473 NVEMATMLRKEMFENQ 488 (494)
Q Consensus 473 ~~~~a~~~~~~m~~~~ 488 (494)
+.+.|.+.|....+..
T Consensus 769 d~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 769 DSKQAAECFQAALQLE 784 (799)
T ss_pred chHHHHHHHHHHHhhc
Confidence 9999999998877654
No 104
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=0.00011 Score=64.18 Aligned_cols=314 Identities=15% Similarity=0.144 Sum_probs=191.6
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHH
Q 011081 108 YATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRML 187 (494)
Q Consensus 108 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m 187 (494)
|.+++-.+.+..+++.|++++....++. ..+....+.|..+|-+..+ +..|-+.++++
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-------------------p~~rAgLSlLgyCYY~~Q~---f~~AA~CYeQL 70 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-------------------PRSRAGLSLLGYCYYRLQE---FALAAECYEQL 70 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-------------------ccchHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 5666777778888888888887665532 2234456667777777777 88888888877
Q ss_pred HhCCCCcChHhHHH-HHHHHHcCCChhHHHHHHHHHhcCCccccccc-----------cc--ccccccccc---cCHHHH
Q 011081 188 MSRGLSVKVSTCNA-LIWEVSRGKGVISGYEIYREVFGLDSDATAGI-----------GK--DVKRVVRVR---PNVHTF 250 (494)
Q Consensus 188 ~~~g~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----------~~--~~~~~~~~~---p~~~~~ 250 (494)
-..- |...-|.. -...+.+.+.+.+|+++...|.+.+.- .... ++ .++....-. -+..+.
T Consensus 71 ~ql~--P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L-~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~ 147 (459)
T KOG4340|consen 71 GQLH--PELEQYRLYQAQSLYKACIYADALRVAFLLLDNPAL-HSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQ 147 (459)
T ss_pred HhhC--hHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHH-HHHHHHHHHHHhcccccCcchHHHHHhccCCCccchh
Confidence 6533 33322221 123344556677777777666543110 0000 00 000000011 244444
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHc-CCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-------------C
Q 011081 251 NALMVGFYREGAFEKVEDVWVEMARL-GCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEH-------------D 316 (494)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-------------~ 316 (494)
+...-...+.|++++|.+-|+...+- |..| ...|+..+ +..+.|+++.|++...+++++|+.. |
T Consensus 148 in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiD 225 (459)
T KOG4340|consen 148 INLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGID 225 (459)
T ss_pred ccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCc
Confidence 44445556899999999999998776 4544 56777666 4456789999999999999987521 1
Q ss_pred H---------------hHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 317 V---------------VAYNTIIGGFCEIGEMARAEEFFREMGLS-GVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 317 ~---------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
+ ..+|.-...+.+.|+++.|.+.+-+|.-+ .-..|++|...+.-. -..+++.+..+-+.-+++
T Consensus 226 vrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~ 304 (459)
T KOG4340|consen 226 VRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQ 304 (459)
T ss_pred hhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHh
Confidence 1 11333334456889999999999888643 224577777665433 234567777777777777
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 011081 381 KGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLC-EEGKMEEALKVQAEMVG 451 (494)
Q Consensus 381 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~ 451 (494)
... -...||..++-.||+..-++.|.+++.+.-...-.-.+...|+ +++++. -.-..++|.+-++.+.+
T Consensus 305 ~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~ 374 (459)
T KOG4340|consen 305 QNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAG 374 (459)
T ss_pred cCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHH
Confidence 653 3567899999999999999999998763110000012233333 333333 34567777777766653
No 105
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=1.5e-05 Score=77.79 Aligned_cols=208 Identities=11% Similarity=0.085 Sum_probs=149.4
Q ss_pred hhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccc
Q 011081 159 FVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVK 238 (494)
Q Consensus 159 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 238 (494)
..|.-+|-+|...|+ -.+|.++..+..+ -+|++..|..+.+......-+++|.++++...
T Consensus 425 emw~~vi~CY~~lg~---~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~s--------------- 484 (777)
T KOG1128|consen 425 EMWDPVILCYLLLGQ---HGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYIS--------------- 484 (777)
T ss_pred HHHHHHHHHHHHhcc---cchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhh---------------
Confidence 346667888888888 7888888877776 46788888888888888777888888887762
Q ss_pred cccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 011081 239 RVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVV 318 (494)
Q Consensus 239 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 318 (494)
..+-..+.......++++++.+.|+.-.+.+ +.-..+|..+..+..+.++++.|.+.|....... +-+..
T Consensus 485 --------arA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-Pd~~e 554 (777)
T KOG1128|consen 485 --------ARAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-PDNAE 554 (777)
T ss_pred --------HHHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-CCchh
Confidence 2222222222334688888888888776654 4456788888888888889998888888877653 33567
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHH
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGF-EPEGSTIEVLIGEL 397 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~ 397 (494)
.||.+-.+|.+.|+-.+|...+.+..+.+ .-+...|-.-+....+.|.+++|++.+.++..... .-|..+...++...
T Consensus 555 aWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 555 AWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred hhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHH
Confidence 89999999999999999999988888776 44555666666677888889998888888765211 11444444444433
No 106
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.53 E-value=2.7e-05 Score=67.00 Aligned_cols=160 Identities=17% Similarity=0.095 Sum_probs=112.2
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC
Q 011081 200 NALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCE 279 (494)
Q Consensus 200 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 279 (494)
..+-..+.-.|+-+....+........ ..|....+..+....+.|++.+|...+++..... +
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-----------------~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p 131 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-----------------PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-P 131 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-----------------cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-C
Confidence 344455566666666666666543322 2255666667778888888888888888877654 6
Q ss_pred cCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011081 280 PDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLV 359 (494)
Q Consensus 280 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 359 (494)
+|..+|+.+.-+|.+.|+.++|..-|.+..+.. .-+...+|.|...|.-.|+.+.|..++......+ .-|...-..+.
T Consensus 132 ~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLA 209 (257)
T COG5010 132 TDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLA 209 (257)
T ss_pred CChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHH
Confidence 677788888888888888888888887777653 3356667777777777888888888887777664 44666666777
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 011081 360 NGYCRAGDVDSAILVYNDMC 379 (494)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~m~ 379 (494)
......|++++|..+-..-.
T Consensus 210 l~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 210 LVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHhhcCChHHHHhhccccc
Confidence 77777888888877765543
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.50 E-value=0.0006 Score=74.00 Aligned_cols=307 Identities=11% Similarity=-0.031 Sum_probs=185.3
Q ss_pred HHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccccccccc--
Q 011081 168 CLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRP-- 245 (494)
Q Consensus 168 ~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-- 245 (494)
....|+ +..+.+.++.+.......+..........+...|+++++...+.+......... .+..+
T Consensus 384 l~~~g~---~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~----------~~~~~~~ 450 (903)
T PRK04841 384 LFNQGE---LSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRN----------IELDGTL 450 (903)
T ss_pred HHhcCC---hHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccC----------cccchhH
Confidence 444566 666666655542111111222333445556678899999999887744211000 00011
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCC
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDC----YSYSVLMAVFCEERRMREAEKLWEEMRDK----NV-EHD 316 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~ 316 (494)
.......+...+...|++++|...+++..+.--..+. ...+.+...+...|++++|...+++.... |- ..-
T Consensus 451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~ 530 (903)
T PRK04841 451 QAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYA 530 (903)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHH
Confidence 1222233345566899999999999987763111121 23455666778899999999999887642 21 111
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC--
Q 011081 317 VVAYNTIIGGFCEIGEMARAEEFFREMGLS----GVE--S-SSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG--FEP-- 385 (494)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p-- 385 (494)
..++..+...+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 610 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ 610 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH
Confidence 235566677888999999999998886542 211 1 22334555666777899999999998876531 112
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---
Q 011081 386 EGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSY-----MFLIKGLCEEGKMEEALKVQAEMVGKGFEPS--- 457 (494)
Q Consensus 386 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--- 457 (494)
....+..+...+...|+.++|.+.+.....-.........+ ...+..+...|+.+.|.+++...........
T Consensus 611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 690 (903)
T PRK04841 611 QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFL 690 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhH
Confidence 23344445667788999999999887553321111111111 1122445568999999999877654211111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011081 458 LEIYSAFIDGYMKEGNVEMATMLRKEMFEN 487 (494)
Q Consensus 458 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 487 (494)
...+..+..++...|+.++|..++++....
T Consensus 691 ~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 691 QGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 112345667788999999999999988764
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.49 E-value=3.6e-05 Score=66.24 Aligned_cols=127 Identities=9% Similarity=0.116 Sum_probs=93.2
Q ss_pred CCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHH
Q 011081 209 GKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVL 288 (494)
Q Consensus 209 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 288 (494)
.++.+++...++..+..+|. |...|..+...|...|++++|...|++..+.. +-+...+..+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-----------------~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~l 113 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-----------------NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAAL 113 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 55667777777777666544 78888888888888888888888888887764 3356667777
Q ss_pred HHH-HHhcCC--HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011081 289 MAV-FCEERR--MREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTF 355 (494)
Q Consensus 289 i~~-~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 355 (494)
..+ +...|+ .++|.+++++..+.+ +.+..++..+...+.+.|++++|+..|+++.+.. +|+..-+
T Consensus 114 A~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 114 ATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHH
Confidence 765 356666 488888888888775 4467778888888888888888888888887764 4554333
No 109
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.49 E-value=6e-05 Score=77.76 Aligned_cols=180 Identities=8% Similarity=0.100 Sum_probs=110.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC
Q 011081 253 LMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGE 332 (494)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 332 (494)
++.......++.-+..+...|.+.+ -+...+..+..+|-+.|+.++|..+|+++.+.. +-|..+.|.+...|... +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 3333444444444444444554432 234466777778888888888888888887776 55777788888888877 8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 333 MARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKA 412 (494)
Q Consensus 333 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 412 (494)
+++|++++.+.... |....++.++.++|.++..... -|...+..+...
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~-~d~d~f~~i~~k---------------- 212 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNS-DDFDFFLRIERK---------------- 212 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCc-ccchHHHHHHHH----------------
Confidence 88888777776542 5555677777777777776532 122222222221
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011081 413 RVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYM 469 (494)
Q Consensus 413 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 469 (494)
.....+..--..++-.+-..|-..++++++..+++.+++.. +-|.....-++.+|.
T Consensus 213 i~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 213 VLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 12222222334455556667777788888888888888652 335556666777665
No 110
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.48 E-value=0.00011 Score=75.07 Aligned_cols=184 Identities=12% Similarity=0.112 Sum_probs=140.1
Q ss_pred hhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccc
Q 011081 152 RECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATA 231 (494)
Q Consensus 152 ~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 231 (494)
+++..++.++-.|..+..+.|+ .++|..+++...+.... +......+...+.+.+++++|+..+++.+..+++
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~---~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~--- 152 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHR---SDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS--- 152 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCC---cHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC---
Confidence 3455567888889999999999 99999999999986543 5677788889999999999999999999888765
Q ss_pred ccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 232 GIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK 311 (494)
Q Consensus 232 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 311 (494)
+....+.+..++.+.|++++|.++|++....+ +-+..++..+..++.+.|+.++|...|+...+.
T Consensus 153 --------------~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 153 --------------SAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred --------------CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 78888899999999999999999999999843 345788999999999999999999999998765
Q ss_pred CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHh
Q 011081 312 NVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS----GVESSSVTFEHLVNGYCR 364 (494)
Q Consensus 312 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~li~~~~~ 364 (494)
- .+....|+.++. ++..-..+++++.-. |.+....+...+|..|.+
T Consensus 218 ~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 218 I-GDGARKLTRRLV------DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred h-CcchHHHHHHHH------HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 2 345556555543 233344455555433 222333444555555543
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.47 E-value=1.3e-05 Score=68.98 Aligned_cols=126 Identities=10% Similarity=0.101 Sum_probs=88.4
Q ss_pred cCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHH-HccCC--HHHH
Q 011081 260 EGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGF-CEIGE--MARA 336 (494)
Q Consensus 260 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~-~~~g~--~~~A 336 (494)
.++.+++...++...+.. +.|...|..+...|...|++++|...|+...+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666666654 5567777778788888888888888888777764 34666777777653 56666 4788
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 011081 337 EEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGST 389 (494)
Q Consensus 337 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 389 (494)
.+++++..+.+ +-+...+..+...+.+.|++++|...|+.+.+.. .|+..-
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r 180 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNR 180 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccH
Confidence 88888887765 4566777777777788888888888888877764 344433
No 112
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=0.0011 Score=67.55 Aligned_cols=260 Identities=13% Similarity=0.142 Sum_probs=124.9
Q ss_pred CCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCC--CCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccc
Q 011081 155 GSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRG--LSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAG 232 (494)
Q Consensus 155 ~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 232 (494)
..+|......++++...+- ..+.++++++.+-.. +.-+...-|.|+-...+ .+..+..+..+++-.-+
T Consensus 981 ~~dPe~vS~tVkAfMtadL---p~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD------ 1050 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADL---PNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD------ 1050 (1666)
T ss_pred cCChHHHHHHHHHHHhcCC---cHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC------
Confidence 3467778888899998888 888888888876322 11122233444433333 23344444444442221
Q ss_pred cccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011081 233 IGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKN 312 (494)
Q Consensus 233 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 312 (494)
.|+ +...+...+-+++|+.+|+..- .+....+.||. .-+.+|.|.+.-++..
T Consensus 1051 -----------a~~------ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n--- 1102 (1666)
T KOG0985|consen 1051 -----------APD------IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN--- 1102 (1666)
T ss_pred -----------chh------HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC---
Confidence 111 1223334445566666665432 23333333332 1233444443332221
Q ss_pred CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 011081 313 VEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEV 392 (494)
Q Consensus 313 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 392 (494)
...+|..+..+-.+.|...+|++-|-+. -|+..|..+++...+.|.+++-.+++....+..-+|... +.
T Consensus 1103 ---~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~e 1171 (1666)
T KOG0985|consen 1103 ---EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SE 1171 (1666)
T ss_pred ---ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HH
Confidence 3334555555555555555555444322 233445555555555555555555554444443333322 24
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHH--------------------------HHHHHHHHHhcCCHHHHHHHH
Q 011081 393 LIGELCDKRRVFEALDILKARVVKFGLFPTEKS--------------------------YMFLIKGLCEEGKMEEALKVQ 446 (494)
Q Consensus 393 li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~--------------------------~~~li~~~~~~g~~~~A~~~~ 446 (494)
||-+|++.+++.+..+++. -||... |..|...+...|+++.|..--
T Consensus 1172 Li~AyAkt~rl~elE~fi~--------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1172 LIFAYAKTNRLTELEEFIA--------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred HHHHHHHhchHHHHHHHhc--------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555544443332 133333 445555555555555554433
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011081 447 AEMVGKGFEPSLEIYSAFIDGYMKEGNVEMA 477 (494)
Q Consensus 447 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 477 (494)
++. -+..||..+-.+|...+.+.-|
T Consensus 1244 RKA------ns~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1244 RKA------NSTKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred hhc------cchhHHHHHHHHHhchhhhhHH
Confidence 322 2455666666666655554443
No 113
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.45 E-value=0.0011 Score=59.51 Aligned_cols=308 Identities=7% Similarity=0.024 Sum_probs=200.8
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHh
Q 011081 110 TIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMS 189 (494)
Q Consensus 110 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~ 189 (494)
-+-..+...|++..|+.-|..+++-. ...|-++.. -...|...|+ -..|+.-+.++++
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~d-----p~~Y~aifr--------------RaT~yLAmGk---sk~al~Dl~rVle 100 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGD-----PNNYQAIFR--------------RATVYLAMGK---SKAALQDLSRVLE 100 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCC-----chhHHHHHH--------------HHHHHhhhcC---CccchhhHHHHHh
Confidence 34555666677777777776665421 111111111 1123455566 6667777777766
Q ss_pred CCCCcChHh-HHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHH--HHHHHHHhcCCHhHH
Q 011081 190 RGLSVKVST-CNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFN--ALMVGFYREGAFEKV 266 (494)
Q Consensus 190 ~g~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~li~~~~~~g~~~~a 266 (494)
++||... -..-...+.+.|.++.|..=|+..+..++. .+...++. ....+....|+ ..+..+.-.|+...|
T Consensus 101 --lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s--~~~~~eaq--skl~~~~e~~~l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 101 --LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPS--NGLVLEAQ--SKLALIQEHWVLVQQLKSASGSGDCQNA 174 (504)
T ss_pred --cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCC--cchhHHHH--HHHHhHHHHHHHHHHHHHHhcCCchhhH
Confidence 4566543 222345678899999999999999887663 11111111 11223333333 345566778999999
Q ss_pred HHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011081 267 EDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 267 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
+.....+++.. +-|...|..-..+|...|++..|+.=+....+.. ..+..+..-+-..+...|+.+.++...++-++.
T Consensus 175 i~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 175 IEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred HHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 99999998864 5588888888999999999999988777665543 346666667778888999999999998888765
Q ss_pred CCCCCHHHH----HH---H------HHHHHhcCCHHHHHHHHHHHHHCCCCCChhh---HHHHHHHHHhcCCHHHHHHHH
Q 011081 347 GVESSSVTF----EH---L------VNGYCRAGDVDSAILVYNDMCRKGFEPEGST---IEVLIGELCDKRRVFEALDIL 410 (494)
Q Consensus 347 ~~~~~~~~~----~~---l------i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~~~~~~a~~~~ 410 (494)
.||.... -. + +......++|.++++-.+...+......... +..+..++...+++.+|++..
T Consensus 253 --dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC 330 (504)
T KOG0624|consen 253 --DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQC 330 (504)
T ss_pred --CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHH
Confidence 4554322 11 1 1233456778888888888777653322333 345556677788999999987
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 411 KARVVKFGLFPT-EKSYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 411 ~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
.+.+. +.|+ ..++.--..+|.-...++.|+.=|+...+.
T Consensus 331 ~evL~---~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 331 KEVLD---IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHh---cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 75553 3455 667777777888777888888888877754
No 114
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=0.00066 Score=67.52 Aligned_cols=332 Identities=13% Similarity=0.092 Sum_probs=186.1
Q ss_pred hhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChh
Q 011081 80 GLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPF 159 (494)
Q Consensus 80 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (494)
...|+.+.|.+-...+. +...|..+.++|++.++++-|.-.+..|....+ ..++.++. ..+. .
T Consensus 739 vtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRg-------aRAlR~a~-q~~~--e 801 (1416)
T KOG3617|consen 739 VTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARG-------ARALRRAQ-QNGE--E 801 (1416)
T ss_pred EEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhh-------HHHHHHHH-hCCc--c
Confidence 34466666655544443 446899999999999999988877766654211 11111111 1111 1
Q ss_pred hHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccc
Q 011081 160 VFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKR 239 (494)
Q Consensus 160 ~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 239 (494)
.-.-+.......|- +++|..+|++-++.+ .|=..|...|.+++|.++-+.--.
T Consensus 802 ~eakvAvLAieLgM---lEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DR--------------- 854 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGM---LEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDR--------------- 854 (1416)
T ss_pred hhhHHHHHHHHHhh---HHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccc---------------
Confidence 11111122234455 888888888776632 344556677888888776543311
Q ss_pred ccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHH----------HcC---------CCcCHhHHHHHHHHHHhcCCHHH
Q 011081 240 VVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMA----------RLG---------CEPDCYSYSVLMAVFCEERRMRE 300 (494)
Q Consensus 240 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~----------~~g---------~~p~~~~~~~li~~~~~~g~~~~ 300 (494)
.--..||..-..-+-..++.+.|+++|++.. ... -..|...|.-...-+-..|+.|.
T Consensus 855 ----iHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~Gemda 930 (1416)
T KOG3617|consen 855 ----IHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDA 930 (1416)
T ss_pred ----eehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHH
Confidence 1123445555555556667777776665431 110 01233334444444445677777
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 301 AEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 301 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
|+.+|..... |-+++...|-.|+.++|-++-++- -|......|.+.|-..|++.+|..+|-+...
T Consensus 931 Al~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 931 ALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 7777766553 456777777888888887776553 3556777888999999999999988877542
Q ss_pred CC--C------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH----
Q 011081 381 KG--F------EPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAE---- 448 (494)
Q Consensus 381 ~~--~------~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~---- 448 (494)
-. + ..+...+|..+ .....+.-.|..+|++ .|.. +...+..|-+.|.+.+|+++--+
T Consensus 996 fsnAIRlcKEnd~~d~L~nlal--~s~~~d~v~aArYyEe----~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf 1064 (1416)
T KOG3617|consen 996 FSNAIRLCKENDMKDRLANLAL--MSGGSDLVSAARYYEE----LGGY-----AHKAVMLYHKAGMIGKALELAFRTQQF 1064 (1416)
T ss_pred HHHHHHHHHhcCHHHHHHHHHh--hcCchhHHHHHHHHHH----cchh-----hhHHHHHHHhhcchHHHHHHHHhhccc
Confidence 10 0 00111111111 1122233334444441 2211 22344567778888777765322
Q ss_pred ----HHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 449 ----MVGKGF--EPSLEIYSAFIDGYMKEGNVEMATMLRKEMF 485 (494)
Q Consensus 449 ----m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 485 (494)
++...+ .-|+...+.-.+-++.+.++++|..++-...
T Consensus 1065 ~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1065 SALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 122223 3357777777777888888888887765443
No 115
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.43 E-value=6.1e-05 Score=73.56 Aligned_cols=170 Identities=15% Similarity=0.162 Sum_probs=105.5
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCH
Q 011081 254 MVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEM 333 (494)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 333 (494)
|.+.....+|.+|+.+++.++++.. -..-|-.+.+.|+..|+++.|.++|-+.- .++--|.+|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 4455566778888888887776532 23346667778888888888888876532 345667888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 334 ARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKAR 413 (494)
Q Consensus 334 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 413 (494)
++|.++-.+.. |.......|.+-..-+-++|++.+|.++|-.+. .|+ ..|..|-+.|..+..+++..+
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k- 875 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEK- 875 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHH-
Confidence 88887765543 333445566666666777788777777765432 233 235566777777766666542
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 414 VVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEM 449 (494)
Q Consensus 414 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (494)
.+| ..-..|-..+..-|-..|++..|..-|-+.
T Consensus 876 --~h~-d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 876 --HHG-DHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred --hCh-hhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 111 011224444555566666666666655444
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.43 E-value=5.1e-05 Score=65.38 Aligned_cols=157 Identities=11% Similarity=0.043 Sum_probs=121.4
Q ss_pred HHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccccccccc
Q 011081 166 KCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRP 245 (494)
Q Consensus 166 ~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (494)
..+...|+ -+....+....... ..-+....+.++....+.|++..|...|.+.....+ +
T Consensus 74 ~a~~~~G~---a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-----------------~ 132 (257)
T COG5010 74 TALYLRGD---ADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-----------------T 132 (257)
T ss_pred HHHHhccc---ccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-----------------C
Confidence 33444555 45555554443322 223556667788899999999999999999977653 4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
|..+|+.+.-+|.+.|++++|..-|.+..+.- .-+...++.+.-.|.-.|+++.|..++......+ .-|..+-..+..
T Consensus 133 d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl 210 (257)
T COG5010 133 DWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLAL 210 (257)
T ss_pred ChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHH
Confidence 89999999999999999999999999988864 2355677888888999999999999999888774 347778888888
Q ss_pred HHHccCCHHHHHHHHHHHHh
Q 011081 326 GFCEIGEMARAEEFFREMGL 345 (494)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~ 345 (494)
.....|++++|.++...-..
T Consensus 211 ~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 211 VVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred HHhhcCChHHHHhhcccccc
Confidence 89999999999988766543
No 117
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.41 E-value=0.0024 Score=62.08 Aligned_cols=363 Identities=13% Similarity=0.099 Sum_probs=205.9
Q ss_pred ccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHH-CCChhHHHHHHHHHHcCCCCCChHHHHHHH--HHH-hhhcC--
Q 011081 82 KNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSR-ARLIGPARDVIRVALRSPENDPKLKLFEVL--VKT-YRECG-- 155 (494)
Q Consensus 82 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--~~~-~~~~~-- 155 (494)
-|+-+.|........+.. .-+.+.|. ++..+-| -+++++|+..|..++.-+.. +..++..+ ++. ++...
T Consensus 54 lg~~~ea~~~vr~glr~d--~~S~vCwH-v~gl~~R~dK~Y~eaiKcy~nAl~~~~d--N~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRND--LKSHVCWH-VLGLLQRSDKKYDEAIKCYRNALKIEKD--NLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred ccchHHHHHHHHHHhccC--cccchhHH-HHHHHHhhhhhHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHhhhhH
Confidence 355666766665554321 22334444 4444444 46799999999888875432 22222211 111 11111
Q ss_pred -----------C-ChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCC-CCcChHhHHHHHH------HHHcCCChhHHH
Q 011081 156 -----------S-APFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRG-LSVKVSTCNALIW------EVSRGKGVISGY 216 (494)
Q Consensus 156 -----------~-~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~------~~~~~~~~~~a~ 216 (494)
+ ....|..+..+.--.|+ ...|.++.+...+.- -.|+...+..... ...+.|..+.|+
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~---y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~al 205 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGE---YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKAL 205 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 1 22345566667777788 999999999888754 2456655554432 345667777777
Q ss_pred HHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHH-HHHhc
Q 011081 217 EIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMA-VFCEE 295 (494)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~-~~~~~ 295 (494)
+.+..-...- .-....-.+-...+.+.+++++|..++..++.. .||..-|...+. ++.+-
T Consensus 206 e~L~~~e~~i-----------------~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~ 266 (700)
T KOG1156|consen 206 EHLLDNEKQI-----------------VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKI 266 (700)
T ss_pred HHHHhhhhHH-----------------HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHH
Confidence 7665542211 112222334556778889999999999999887 577666654444 33333
Q ss_pred CCHHHHH-HHHHHHHh----------------------------------CCCCCCHhHHHHHHHHHHccCCHHHHHHHH
Q 011081 296 RRMREAE-KLWEEMRD----------------------------------KNVEHDVVAYNTIIGGFCEIGEMARAEEFF 340 (494)
Q Consensus 296 g~~~~a~-~~~~~m~~----------------------------------~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 340 (494)
.+.-++. .+|....+ .|++ .++..+...|-.-...+-..++.
T Consensus 267 ~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p---~vf~dl~SLyk~p~k~~~le~Lv 343 (700)
T KOG1156|consen 267 KDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP---SVFKDLRSLYKDPEKVAFLEKLV 343 (700)
T ss_pred hhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC---chhhhhHHHHhchhHhHHHHHHH
Confidence 2222222 44444332 2221 12233333332222111111222
Q ss_pred HHHHh----CC----------CCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCH
Q 011081 341 REMGL----SG----------VESSSVTF--EHLVNGYCRAGDVDSAILVYNDMCRKGFEPEG-STIEVLIGELCDKRRV 403 (494)
Q Consensus 341 ~~m~~----~~----------~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~ 403 (494)
-.+.. .| -+|+...| -.++..|-+.|+++.|..+++..+.+ .|+. ..|..-...+.+.|.+
T Consensus 344 t~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l 421 (700)
T KOG1156|consen 344 TSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLL 421 (700)
T ss_pred HHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCCh
Confidence 22221 11 14555544 45678889999999999999998876 4543 3455556889999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011081 404 FEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRK 482 (494)
Q Consensus 404 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 482 (494)
++|...+++ ..+.. .+|...-.--..-..+.++.++|.++....-+.|. +..-+-+-+. |.-=.++.|..+++
T Consensus 422 ~eAa~~l~e-a~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mq--cmWf~~E~g~ay~r 494 (700)
T KOG1156|consen 422 DEAAAWLDE-AQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQ--CMWFQLEDGEAYLR 494 (700)
T ss_pred HHHHHHHHH-HHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhh--hHHHhHhhhHHHHH
Confidence 999999984 33322 35554433556667788999999999999988775 4333333333 23333444444443
No 118
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.39 E-value=3.9e-05 Score=62.38 Aligned_cols=95 Identities=11% Similarity=-0.025 Sum_probs=63.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCE 329 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 329 (494)
+..+...+.+.|++++|...|+...... +.+...|..+..++.+.|++++|...|+...... +.+...+..+..++.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3445566667777777777777766654 3456666667777777777777777777776653 4466666777777777
Q ss_pred cCCHHHHHHHHHHHHhC
Q 011081 330 IGEMARAEEFFREMGLS 346 (494)
Q Consensus 330 ~g~~~~A~~~~~~m~~~ 346 (494)
.|++++|...|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777776654
No 119
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=0.001 Score=62.55 Aligned_cols=191 Identities=13% Similarity=0.078 Sum_probs=140.1
Q ss_pred ccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHH
Q 011081 244 RPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTI 323 (494)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 323 (494)
.|+...+...+.+......-..+-.++.+-.+. --.....-..-.+...|++++|+..++.+...- +-|...+...
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~ 346 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKR---GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELA 346 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCc---cchHHHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHH
Confidence 567777777777666555444444444333321 112233333345667899999999999988762 4566677777
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 011081 324 IGGFCEIGEMARAEEFFREMGLSGVESS-SVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRR 402 (494)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 402 (494)
.+.+.+.++.++|.+.++.+... .|+ ......+..+|.+.|++.+|..+++...... +-|...|..|..+|...|+
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCc
Confidence 88999999999999999999886 454 6677778889999999999999999988775 5588899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011081 403 VFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIY 461 (494)
Q Consensus 403 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 461 (494)
..++..... ..|...|+++.|...+....+. .+++..+|
T Consensus 424 ~~~a~~A~A-------------------E~~~~~G~~~~A~~~l~~A~~~-~~~~~~~~ 462 (484)
T COG4783 424 RAEALLARA-------------------EGYALAGRLEQAIIFLMRASQQ-VKLGFPDW 462 (484)
T ss_pred hHHHHHHHH-------------------HHHHhCCCHHHHHHHHHHHHHh-ccCCcHHH
Confidence 887766543 3566789999999998888876 34444444
No 120
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.37 E-value=0.00018 Score=73.53 Aligned_cols=147 Identities=10% Similarity=0.048 Sum_probs=124.4
Q ss_pred CCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 011081 192 LSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWV 271 (494)
Q Consensus 192 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 271 (494)
...++..+-.|.......|..++|..+++...+..|+ +...+..+...+.+.+++++|+..++
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-----------------~~~a~~~~a~~L~~~~~~eeA~~~~~ 144 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-----------------SSEAFILMLRGVKRQQGIEAGRAEIE 144 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-----------------cHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3446888889999999999999999999999887665 78888999999999999999999999
Q ss_pred HHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 011081 272 EMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESS 351 (494)
Q Consensus 272 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 351 (494)
+..... +-+......+..++.+.|++++|..+|+++...+ +-+..++..+...+...|+.++|...|++..+.- .+.
T Consensus 145 ~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~ 221 (694)
T PRK15179 145 LYFSGG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDG 221 (694)
T ss_pred HHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-Ccc
Confidence 999874 3355667788888999999999999999999843 4458899999999999999999999999997763 344
Q ss_pred HHHHHHH
Q 011081 352 SVTFEHL 358 (494)
Q Consensus 352 ~~~~~~l 358 (494)
...|+..
T Consensus 222 ~~~~~~~ 228 (694)
T PRK15179 222 ARKLTRR 228 (694)
T ss_pred hHHHHHH
Confidence 4555443
No 121
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.33 E-value=2.8e-05 Score=63.19 Aligned_cols=109 Identities=9% Similarity=-0.056 Sum_probs=89.3
Q ss_pred HHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcC
Q 011081 182 DIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREG 261 (494)
Q Consensus 182 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 261 (494)
.++++..+. .|+ .+..+...+...|++++|...|+.....++. +...|..+..++.+.|
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-----------------~~~a~~~lg~~~~~~g 72 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-----------------SWRAHIALAGTWMMLK 72 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----------------cHHHHHHHHHHHHHHh
Confidence 344555442 333 3556777888999999999999999877654 8889999999999999
Q ss_pred CHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011081 262 AFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKN 312 (494)
Q Consensus 262 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 312 (494)
++++|...|++..+.. +.+..++..+..++...|++++|...|+...+..
T Consensus 73 ~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 73 EYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred hHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999865 5577888999999999999999999999998863
No 122
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.32 E-value=4.1e-05 Score=61.73 Aligned_cols=98 Identities=14% Similarity=0.122 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG 326 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 326 (494)
......+...+.+.|++++|.+.|+.....+ +.+...+..+...+.+.|++++|..+++...+.+ +.+...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3445555566666666666666666665543 3355556666666666666666666666665553 3345555556666
Q ss_pred HHccCCHHHHHHHHHHHHhC
Q 011081 327 FCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~ 346 (494)
|...|++++|...|+...+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666554
No 123
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.00038 Score=60.13 Aligned_cols=145 Identities=12% Similarity=0.115 Sum_probs=88.8
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc----
Q 011081 254 MVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCE---- 329 (494)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~---- 329 (494)
...|++.|++++|++...... +......=+..+.+..+++-|.+.++.|.+.. +..+.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 355667777777777766521 22222333344556667777777777777653 55566655555543
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011081 330 IGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDI 409 (494)
Q Consensus 330 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 409 (494)
.+...+|.-+|++|-++- +|+..+.+-...++...|++++|..++++.+.+.. -+..+...++-.-...|...++..-
T Consensus 186 gek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred chhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCCChHHHHH
Confidence 345677777777776642 67777777777777777777777777777776653 2455555555554555555444433
No 124
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.30 E-value=0.00032 Score=69.66 Aligned_cols=164 Identities=15% Similarity=0.181 Sum_probs=109.8
Q ss_pred HHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHH
Q 011081 206 VSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSY 285 (494)
Q Consensus 206 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 285 (494)
....|.+++|+.+|++-.. |..|=..|...|.|++|+++-+.--+..+ ..||
T Consensus 810 AieLgMlEeA~~lYr~ckR-------------------------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Ty 861 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR-------------------------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTY 861 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH-------------------------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhH
Confidence 3466888999999988743 44555667778999999988764332222 3466
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh----------CC---------CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011081 286 SVLMAVFCEERRMREAEKLWEEMRD----------KN---------VEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 286 ~~li~~~~~~g~~~~a~~~~~~m~~----------~g---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
.....-+-..++.+.|++.|++... .. -..|...|.-....+-..|+.+.|+.+|....
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-- 939 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-- 939 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh--
Confidence 6666677777888888888765321 11 02233444445555556677777777776653
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 347 GVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKA 412 (494)
Q Consensus 347 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 412 (494)
-|-.++...|-.|+.++|-++-++ .| |......+.+.|.+.|++.+|..+|.+
T Consensus 940 -------D~fs~VrI~C~qGk~~kAa~iA~e---sg---d~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 940 -------DYFSMVRIKCIQGKTDKAARIAEE---SG---DKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred -------hhhhheeeEeeccCchHHHHHHHh---cc---cHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 245566666777888877777654 22 566677788888999999999888863
No 125
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.30 E-value=0.0037 Score=59.60 Aligned_cols=121 Identities=13% Similarity=0.074 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 011081 368 VDSAILVYNDMCRK-GFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFP-TEKSYMFLIKGLCEEGKMEEALKV 445 (494)
Q Consensus 368 ~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 445 (494)
.+.....+++++.. .+.| ..+|..+++...+...+..|..+|.+. .+.+..+ ++..+++++.-||. ++.+.|.++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~ka-R~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrI 423 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKA-REDKRTRHHVFVAAALMEYYCS-KDKETAFRI 423 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHH-hhccCCcchhhHHHHHHHHHhc-CChhHHHHH
Confidence 34444555555443 2233 356777888888888999999999854 4445445 77788888887775 788999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccccc
Q 011081 446 QAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVRQE 492 (494)
Q Consensus 446 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~pd 492 (494)
|+--++. +.-+..--...++-+...++-..|+.+|++.+..+..+|
T Consensus 424 FeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 424 FELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred HHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 9988765 344455556778888899999999999999988855544
No 126
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.0044 Score=59.71 Aligned_cols=369 Identities=12% Similarity=0.111 Sum_probs=199.6
Q ss_pred cCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhc--------
Q 011081 83 NNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYREC-------- 154 (494)
Q Consensus 83 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 154 (494)
+.++.|+....... +-+..+...-...|-+.+++++|.++|..+.++...+.+...-..++..-...
T Consensus 93 nk~Dealk~~~~~~-----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 93 NKLDEALKTLKGLD-----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred ccHHHHHHHHhccc-----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 44555555554221 11222444445667788999999999999988775555554444443321111
Q ss_pred CC-ChhhHHHHHH---HHHhcCChhcHHHHHHHHHHHHhCCC-------------CcChH-hHHHHHHHHHcCCChhHHH
Q 011081 155 GS-APFVFDLLIK---CCLEVKNIEKIETCVDIVRMLMSRGL-------------SVKVS-TCNALIWEVSRGKGVISGY 216 (494)
Q Consensus 155 ~~-~~~~~~~li~---~~~~~~~~~~~~~a~~~~~~m~~~g~-------------~~~~~-~~~~ll~~~~~~~~~~~a~ 216 (494)
.- ...+|..+.. .+...|+ +.+|+++++...+.+. .-... .-..|..++...|+.++|.
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gk---y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGK---YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 11 1235555443 3456777 9999999998843221 10111 1223455678899999999
Q ss_pred HHHHHHhcCCccccccccccccccccccc-CHHHHHHHHHHHHhcCCHh-HHHHHHHHHHH-----------cCCCcCHh
Q 011081 217 EIYREVFGLDSDATAGIGKDVKRVVRVRP-NVHTFNALMVGFYREGAFE-KVEDVWVEMAR-----------LGCEPDCY 283 (494)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~-----------~g~~p~~~ 283 (494)
++|...+..++.. .| -.+.-|.++..-....-++ .++..++.... .. .-...
T Consensus 245 ~iy~~~i~~~~~D--------------~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~-qk~~i 309 (652)
T KOG2376|consen 245 SIYVDIIKRNPAD--------------EPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK-QKQAI 309 (652)
T ss_pred HHHHHHHHhcCCC--------------chHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH-HHHHH
Confidence 9999998765430 11 1122222222111111111 11111111110 00 00111
Q ss_pred HH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011081 284 SY-SVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCE--IGEMARAEEFFREMGLSGVESSSVTFEHLVN 360 (494)
Q Consensus 284 ~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 360 (494)
.. +.++..|. +.-+.+.++-..... ..|.. .+.+++....+ ...+.++.+++...-+..-.-.....-.++.
T Consensus 310 ~~N~~lL~l~t--nk~~q~r~~~a~lp~--~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQ 384 (652)
T KOG2376|consen 310 YRNNALLALFT--NKMDQVRELSASLPG--MSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQ 384 (652)
T ss_pred HHHHHHHHHHh--hhHHHHHHHHHhCCc--cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHH
Confidence 11 22333332 223333333322222 13333 33344433322 2246677777777665532223455666777
Q ss_pred HHHhcCCHHHHHHHHH--------HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CCCHHH----HH
Q 011081 361 GYCRAGDVDSAILVYN--------DMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGL-FPTEKS----YM 427 (494)
Q Consensus 361 ~~~~~g~~~~a~~~~~--------~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~p~~~~----~~ 427 (494)
.....|+++.|.+++. .+.+.+..|- +...++..+.+.++-+.|..++.+.+..... .+.... +.
T Consensus 385 l~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~ 462 (652)
T KOG2376|consen 385 LKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMR 462 (652)
T ss_pred HHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHH
Confidence 7888899999999988 5555555554 4455666677777766666666655443211 111222 23
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 428 FLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKE 483 (494)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 483 (494)
-+...-.+.|+.++|..+++++.+. .++|..+...++.+|++. +.+.|..+-+.
T Consensus 463 ~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 463 EAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 3333445679999999999999975 377889999999999887 56777666443
No 127
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.29 E-value=5.1e-05 Score=61.13 Aligned_cols=99 Identities=12% Similarity=0.063 Sum_probs=74.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011081 282 CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNG 361 (494)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 361 (494)
......+...+.+.|++++|.+.++.+...+ +.+...|..+...|.+.|++++|..+|++..+.+ +.+...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3445666677777888888888888877654 4467777788888888888888888888777664 5566777777778
Q ss_pred HHhcCCHHHHHHHHHHHHHCC
Q 011081 362 YCRAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 362 ~~~~g~~~~a~~~~~~m~~~~ 382 (494)
|...|++++|...|+...+.+
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHhc
Confidence 888888888888888777653
No 128
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.24 E-value=1.7e-06 Score=51.01 Aligned_cols=33 Identities=36% Similarity=0.680 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC
Q 011081 249 TFNALMVGFYREGAFEKVEDVWVEMARLGCEPD 281 (494)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 281 (494)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577888888888888888888888887777776
No 129
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.22 E-value=2.2e-06 Score=50.54 Aligned_cols=33 Identities=42% Similarity=0.815 Sum_probs=15.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLSGVESS 351 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 351 (494)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444443
No 130
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=0.0013 Score=56.55 Aligned_cols=187 Identities=16% Similarity=0.084 Sum_probs=131.8
Q ss_pred CCHhHHHHHHHHHHHc---C-CCcCHhH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHH
Q 011081 261 GAFEKVEDVWVEMARL---G-CEPDCYS-YSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMAR 335 (494)
Q Consensus 261 g~~~~a~~~~~~m~~~---g-~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 335 (494)
.+.++..+++.++... | ..++..+ |..++-+....|+.+.|...++.+...- +-+..+-..-..-+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 4677778877777543 3 4455543 5666677778899999999999887652 2222222222233445788999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 336 AEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVV 415 (494)
Q Consensus 336 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 415 (494)
|+++|+.+.+.+ +.|.+++--=+...-..|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++.+-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999998886 667777776666666777777888888777765 466889999999999999999999999987766
Q ss_pred hCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Q 011081 416 KFGLFPTEKSYMFLIKGLCEEG---KMEEALKVQAEMVGK 452 (494)
Q Consensus 416 ~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 452 (494)
... .+...+..+...+.-.| +++.|.++|.+.++.
T Consensus 183 ~~P--~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 183 IQP--FNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred cCC--CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 543 23444555555544333 577788888888865
No 131
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.19 E-value=0.004 Score=61.46 Aligned_cols=109 Identities=21% Similarity=0.260 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011081 354 TFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGL 433 (494)
Q Consensus 354 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 433 (494)
-|..+.+.|+..|+++.|.++|-+. ..++-.|..|.+.|+++.|.++-. +-.|-......|-+-..-+
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~---e~~~~e~t~~~yiakaedl 834 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAE---ECHGPEATISLYIAKAEDL 834 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHH---HhcCchhHHHHHHHhHHhH
Confidence 3455555666666666666665442 123444555666666666655533 2223233334444444445
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 434 CEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKE 483 (494)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 483 (494)
-+.|++.+|.++|-.. | .|+. -|..|-++|..++.+++.++
T Consensus 835 dehgkf~eaeqlyiti---~-~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 835 DEHGKFAEAEQLYITI---G-EPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HhhcchhhhhheeEEc---c-CchH-----HHHHHHhhCcchHHHHHHHH
Confidence 5566666666665544 2 3442 45566666666666666544
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.18 E-value=0.002 Score=60.77 Aligned_cols=144 Identities=11% Similarity=0.137 Sum_probs=117.8
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHc
Q 011081 251 NALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD-VVAYNTIIGGFCE 329 (494)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~ 329 (494)
.-..-.+.+.|++++|+..++.+...- +-|..........+.+.++.++|.+.++.+... .|+ ...+-.+..+|.+
T Consensus 310 YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~ 386 (484)
T COG4783 310 YGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHh
Confidence 333445667899999999999988762 334555566778899999999999999999987 455 6778888999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011081 330 IGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDI 409 (494)
Q Consensus 330 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 409 (494)
.|++.+|+.++++..... +-|...|..|..+|...|+..++..-..+. +...|++++|+..
T Consensus 387 ~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~ 447 (484)
T COG4783 387 GGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIF 447 (484)
T ss_pred cCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHH
Confidence 999999999999998875 788999999999999999998888776664 5567899999888
Q ss_pred HHHHHHh
Q 011081 410 LKARVVK 416 (494)
Q Consensus 410 ~~~~~~~ 416 (494)
+....+.
T Consensus 448 l~~A~~~ 454 (484)
T COG4783 448 LMRASQQ 454 (484)
T ss_pred HHHHHHh
Confidence 8754443
No 133
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.18 E-value=0.0019 Score=63.98 Aligned_cols=286 Identities=11% Similarity=0.005 Sum_probs=170.9
Q ss_pred ChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccc-ccc
Q 011081 157 APFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAG-IGK 235 (494)
Q Consensus 157 ~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~ 235 (494)
|+.+.--+---|+..++ ++.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+..+..-+..-.- .++
T Consensus 477 dp~~if~lalq~A~~R~---l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQ---LTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred CchHHHHHHHHHHHHHh---HHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 44333333334666677 99999999999998667788999999999999999999999988876543220000 000
Q ss_pred --ccccccccccCHHHHHHHHHHHHhcCCHhH------HHHHHHHHHHc-C-CCcCHhHHHHHHHHHHhcCCHHHHHHHH
Q 011081 236 --DVKRVVRVRPNVHTFNALMVGFYREGAFEK------VEDVWVEMARL-G-CEPDCYSYSVLMAVFCEERRMREAEKLW 305 (494)
Q Consensus 236 --~~~~~~~~~p~~~~~~~li~~~~~~g~~~~------a~~~~~~m~~~-g-~~p~~~~~~~li~~~~~~g~~~~a~~~~ 305 (494)
-.-...+..--..|+..++..+-..-.++. .+++...+.-. + ..-...++..+.......+....-...
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~- 632 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK- 632 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc-
Confidence 000011222233444444433331111111 11111111100 0 000112222222211111100000000
Q ss_pred HHHHhCCCCC--C------HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 306 EEMRDKNVEH--D------VVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYND 377 (494)
Q Consensus 306 ~~m~~~g~~~--~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 377 (494)
+...-..| + ...|......+.+.+..++|...+.+..... +.....|......+...|.+++|.+.|..
T Consensus 633 --Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 633 --LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred --cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 11111111 1 2357777888889999999988888877654 55667788888888899999999999998
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHH--HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 378 MCRKGFEPEGSTIEVLIGELCDKRRVFEALD--ILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 378 m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~--~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
....+ +-+.....++...+.+.|+...|.. ++.++++-. +-+...|-.+...+-+.|+.+.|-+.|....+.
T Consensus 710 Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d--p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 710 ALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD--PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 87754 2245577888888889998877777 777555443 346778888999999999999999999888754
No 134
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.17 E-value=2.9e-06 Score=49.63 Aligned_cols=33 Identities=30% Similarity=0.526 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc
Q 011081 248 HTFNALMVGFYREGAFEKVEDVWVEMARLGCEP 280 (494)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 280 (494)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666554
No 135
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.00035 Score=60.36 Aligned_cols=172 Identities=10% Similarity=0.056 Sum_probs=124.4
Q ss_pred HHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCC
Q 011081 183 IVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGA 262 (494)
Q Consensus 183 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 262 (494)
+.+.+......-+......-...|+..+++++|++...... +......=+..+.+..+
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----------------------~lE~~Al~VqI~lk~~r 152 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----------------------NLEAAALNVQILLKMHR 152 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----------------------hHHHHHHHHHHHHHHHH
Confidence 44444444334343333334456889999999999887631 34444444566778889
Q ss_pred HhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHH
Q 011081 263 FEKVEDVWVEMARLGCEPDCYSYSVLMAVFCE----ERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEE 338 (494)
Q Consensus 263 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 338 (494)
++-|.+.+++|.+.. +..|.+-|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+-...++...|++++|..
T Consensus 153 ~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~ 228 (299)
T KOG3081|consen 153 FDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAES 228 (299)
T ss_pred HHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHH
Confidence 999999999998753 66777777777765 46789999999999875 37899999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHC
Q 011081 339 FFREMGLSGVESSSVTFEHLVNGYCRAGDVDS-AILVYNDMCRK 381 (494)
Q Consensus 339 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~ 381 (494)
++++...+. ..+..+...++..-...|...+ ..+.+.++...
T Consensus 229 lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 229 LLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 999999886 4566777666666666666544 44556666554
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.13 E-value=4.2e-06 Score=48.93 Aligned_cols=29 Identities=31% Similarity=0.548 Sum_probs=11.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 011081 320 YNTIIGGFCEIGEMARAEEFFREMGLSGV 348 (494)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 348 (494)
|+.+|.+|++.|+++.|.++|++|.+.|+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 33333333333333333333333333333
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=0.0031 Score=54.33 Aligned_cols=189 Identities=15% Similarity=0.160 Sum_probs=139.7
Q ss_pred cCCHHHHHHHHHHHHhC---C-CCCCHh-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 011081 295 ERRMREAEKLWEEMRDK---N-VEHDVV-AYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVD 369 (494)
Q Consensus 295 ~g~~~~a~~~~~~m~~~---g-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 369 (494)
..+.++..+++.++... | ..++.. .|..++-+....|+.+.|...++++...- +-+...-..-.--+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 35667777887777542 3 444543 45666677778999999999999988762 222222222222345679999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 370 SAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEM 449 (494)
Q Consensus 370 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (494)
+|+++|+.+++.+ +.|.+++-.-+...-..|+--+|++-+.+.++.. .-|...|.-+...|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--MNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999987 5577788777777777888889999888777654 578999999999999999999999999999
Q ss_pred HhCCCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHccc
Q 011081 450 VGKGFEP-SLEIYSAFIDGYMKEG---NVEMATMLRKEMFENQV 489 (494)
Q Consensus 450 ~~~~~~p-~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~ 489 (494)
+-. .| +...+..+.+.+.-.| +.+-+++++.+.++.++
T Consensus 181 ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 853 55 4555566666544433 67788899998888765
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.01 E-value=0.00052 Score=55.95 Aligned_cols=127 Identities=16% Similarity=0.136 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhHHHH
Q 011081 248 HTFNALMVGFYREGAFEKVEDVWVEMARLGCEPD---CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD--VVAYNT 322 (494)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~ 322 (494)
..|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+........++ ....-.
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 3445555554 3667777777777776653 212 12223344566677777777777777776642222 123444
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 323 IIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDM 378 (494)
Q Consensus 323 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 378 (494)
+...+...|++++|+..++..... ......+......|.+.|+.++|...|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 566677777777777777554322 233445556666777777777777777653
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.00 E-value=0.00033 Score=66.30 Aligned_cols=127 Identities=17% Similarity=0.148 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG 326 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 326 (494)
...-..|+..+...++++.|+.+|+++.+.. |+ ....++..+...++-.+|.+++++..+.. +.+......-...
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF 243 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3444566777778899999999999999774 55 44557888888899999999999988763 4467777777788
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 327 FCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMC 379 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 379 (494)
+.+.++++.|+++.+++.+.. +-+-.+|..|..+|.+.|+++.|+..++.+.
T Consensus 244 Ll~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999873 4455699999999999999999999998874
No 140
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.99 E-value=8.3e-05 Score=70.55 Aligned_cols=121 Identities=14% Similarity=0.080 Sum_probs=104.0
Q ss_pred cCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc--CCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHH
Q 011081 245 PNVHTFNALMVGFYREGAFEKVEDVWVEMARL--GCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNT 322 (494)
Q Consensus 245 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 322 (494)
.+......+++.+....+++++..++.+.... ....-..|..++|+.|.+.|..+.++.+++.=...|+-||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 36677778888888888999999999988776 2223345667999999999999999999999999999999999999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011081 323 IIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRA 365 (494)
Q Consensus 323 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 365 (494)
||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999998888778888887777777665
No 141
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.99 E-value=0.0064 Score=62.20 Aligned_cols=73 Identities=11% Similarity=0.075 Sum_probs=43.4
Q ss_pred HHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHH
Q 011081 143 LFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIY 219 (494)
Q Consensus 143 ~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 219 (494)
.|..++++.+....-..+|..|...|...-+ ..+|.+.|+...+.+.. +...+......|++..+++.|..+.
T Consensus 477 al~ali~alrld~~~apaf~~LG~iYrd~~D---m~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 477 ALHALIRALRLDVSLAPAFAFLGQIYRDSDD---MKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHH
Confidence 3444444433333334556666666666555 66777777766664432 5566666777777777777777663
No 142
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.98 E-value=0.0065 Score=61.46 Aligned_cols=224 Identities=16% Similarity=0.156 Sum_probs=111.3
Q ss_pred hcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHH
Q 011081 259 REGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVF--CEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARA 336 (494)
Q Consensus 259 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 336 (494)
..+++..|......+.+. .|+. .|..++.++ .+.|+.++|..+++.....+.. |..|...+-.+|...|+.++|
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 445666777666666554 3443 233344433 4567777777666666555433 666677777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC----------CHHHH
Q 011081 337 EEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKR----------RVFEA 406 (494)
Q Consensus 337 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~----------~~~~a 406 (494)
..+|++.... .|+......+..+|.+.+++.+-.+.=-+|-+ .++-+...|-++++.+.+.. -..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 7777776654 45566666666666666665442222222222 12223344444444433221 11224
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 407 LDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQA-EMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMF 485 (494)
Q Consensus 407 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 485 (494)
.+.++..+++.|-.-+..-.-.....+...|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..++..+++
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 44444444443311111111222233445566677766663 22222112223333334445555566666666555555
Q ss_pred Hccc
Q 011081 486 ENQV 489 (494)
Q Consensus 486 ~~~~ 489 (494)
+.|.
T Consensus 254 ~k~~ 257 (932)
T KOG2053|consen 254 EKGN 257 (932)
T ss_pred HhCC
Confidence 5543
No 143
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.98 E-value=0.00013 Score=54.33 Aligned_cols=81 Identities=10% Similarity=0.311 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CcCHhHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHhH
Q 011081 249 TFNALMVGFYREGAFEKVEDVWVEMARLGC-EPDCYSYSVLMAVFCEER--------RMREAEKLWEEMRDKNVEHDVVA 319 (494)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~~~~~~ 319 (494)
|....|..+...+++.....+|..+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556666666888888888888888887 778888888887776642 23345566666666666666666
Q ss_pred HHHHHHHHHc
Q 011081 320 YNTIIGGFCE 329 (494)
Q Consensus 320 ~~~li~~~~~ 329 (494)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.95 E-value=0.00046 Score=56.26 Aligned_cols=128 Identities=9% Similarity=0.093 Sum_probs=88.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 011081 199 CNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGC 278 (494)
Q Consensus 199 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 278 (494)
|..++..+. .++...+.+.++.+....+. ........-.+...+...|++++|...|+.......
T Consensus 15 y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~--------------s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~ 79 (145)
T PF09976_consen 15 YEQALQALQ-AGDPAKAEAAAEQLAKDYPS--------------SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAP 79 (145)
T ss_pred HHHHHHHHH-CCCHHHHHHHHHHHHHHCCC--------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC
Confidence 444444443 67777788888888665432 011234444566788889999999999999888752
Q ss_pred CcCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 011081 279 EPDC--YSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREM 343 (494)
Q Consensus 279 ~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 343 (494)
.++. .....|...+...|++++|+..++..... ......+......|.+.|++++|...|+..
T Consensus 80 d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 80 DPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 2221 23445677888899999999998775443 335556778888999999999999988764
No 145
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.95 E-value=1.2e-05 Score=45.83 Aligned_cols=29 Identities=41% Similarity=0.903 Sum_probs=13.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLSG 347 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 347 (494)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34444444444444444444444444433
No 146
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.95 E-value=9e-06 Score=46.31 Aligned_cols=29 Identities=38% Similarity=0.739 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 011081 249 TFNALMVGFYREGAFEKVEDVWVEMARLG 277 (494)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g 277 (494)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46666666666666666666666666554
No 147
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.94 E-value=0.00036 Score=66.03 Aligned_cols=124 Identities=10% Similarity=0.082 Sum_probs=102.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 011081 199 CNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGC 278 (494)
Q Consensus 199 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 278 (494)
..+|+..+...++++.|.++|+++.+.+ |++ ...++..+...++-.+|.+++.+..+..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~------------------pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~- 230 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD------------------PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN- 230 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC------------------CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-
Confidence 4456667777899999999999997653 343 3457888888899999999999988763
Q ss_pred CcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011081 279 EPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMG 344 (494)
Q Consensus 279 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 344 (494)
+-+......-...+.+.++++.|+++.+++.+.. +.+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 231 p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 231 PQDSELLNLQAEFLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 4466677777788999999999999999999873 3456699999999999999999999998775
No 148
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.94 E-value=0.0081 Score=60.78 Aligned_cols=224 Identities=12% Similarity=0.079 Sum_probs=150.5
Q ss_pred HcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHH--HHhcCCHhHHHHHHHHHHHcCCCcCHhH
Q 011081 207 SRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVG--FYREGAFEKVEDVWVEMARLGCEPDCYS 284 (494)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 284 (494)
...+++..|++...+....- |+.. |...+.+ ..+.|+.++|..+++.....+.. |..|
T Consensus 20 ld~~qfkkal~~~~kllkk~------------------Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~t 79 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH------------------PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLT 79 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC------------------CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHH
Confidence 34577888888888876643 3332 3333333 45789999999999888776644 8899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011081 285 YSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCR 364 (494)
Q Consensus 285 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 364 (494)
...+-..|.+.++.++|..+|+...+. .|+..-...+..+|.+.+.+.+-.+.--+|.+. .+.+...+=.++..+.+
T Consensus 80 Lq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 80 LQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHH
Confidence 999999999999999999999999887 577888888899999998887654444444332 12233333223332222
Q ss_pred c-CC---------HHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011081 365 A-GD---------VDSAILVYNDMCRKG-FEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGL 433 (494)
Q Consensus 365 ~-g~---------~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 433 (494)
. .. ..-|.+.++.+.+.+ -.-+..-...-...+...|++++|++++.....+.-...+...-+.-+..+
T Consensus 157 s~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dll 236 (932)
T KOG2053|consen 157 SIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLL 236 (932)
T ss_pred hccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 1 11 223566666666654 222222233334556678999999999964444443344455555677888
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 011081 434 CEEGKMEEALKVQAEMVGKG 453 (494)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~~ 453 (494)
...+++.+..++-.++...|
T Consensus 237 k~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 237 KLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHhcChHHHHHHHHHHHHhC
Confidence 88999999999999998875
No 149
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.87 E-value=0.0014 Score=66.72 Aligned_cols=182 Identities=12% Similarity=0.079 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHH
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVG 256 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 256 (494)
...++..|-+..+.... =...|..|..-|+...+...|.+.|+.+++.++. +...+......
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-----------------daeaaaa~adt 535 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-----------------DAEAAAASADT 535 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-----------------hhhhHHHHHHH
Confidence 55666666555553322 2466888999999888999999999999998765 88999999999
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCcCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHH
Q 011081 257 FYREGAFEKVEDVWVEMARLGCEPDC--YSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMA 334 (494)
Q Consensus 257 ~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 334 (494)
|++..++++|..+.-..-+.. +.-. ..|....-.|.+.++..+|...|+...+.. +.|...|..++.+|..+|++.
T Consensus 536 yae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~ 613 (1238)
T KOG1127|consen 536 YAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYS 613 (1238)
T ss_pred hhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCcee
Confidence 999999999999843322221 1111 122234445677889999999999988875 558889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 335 RAEEFFREMGLSGVESSSV-TFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 335 ~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
.|.++|.+.... .|+.. .---....-+..|.+.+|+..+...+.
T Consensus 614 ~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 614 HALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred hHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999888764 44432 111222345677888888888877654
No 150
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.87 E-value=0.00025 Score=52.84 Aligned_cols=78 Identities=8% Similarity=0.174 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHhHHHHHHHHHHccCC--------HHHHHHHHHHHHhCCCCCCHHHHH
Q 011081 286 SVLMAVFCEERRMREAEKLWEEMRDKNV-EHDVVAYNTIIGGFCEIGE--------MARAEEFFREMGLSGVESSSVTFE 356 (494)
Q Consensus 286 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~--------~~~A~~~~~~m~~~~~~~~~~~~~ 356 (494)
...|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++..- .-+.+.+|++|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445555566777777777888877777 7777788877777665421 223455566666666666666666
Q ss_pred HHHHHHH
Q 011081 357 HLVNGYC 363 (494)
Q Consensus 357 ~li~~~~ 363 (494)
.++..+.
T Consensus 109 ivl~~Ll 115 (120)
T PF08579_consen 109 IVLGSLL 115 (120)
T ss_pred HHHHHHH
Confidence 6665543
No 151
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.86 E-value=0.00041 Score=65.95 Aligned_cols=124 Identities=13% Similarity=0.120 Sum_probs=104.4
Q ss_pred CCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 011081 277 GCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK--NVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVT 354 (494)
Q Consensus 277 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 354 (494)
+.+.+......+++.+....+++.+..++...... ....-..|..++|..|.+.|..++++.+++.=..-|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44557777888899999999999999999888765 2223345567999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 011081 355 FEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDK 400 (494)
Q Consensus 355 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 400 (494)
+|.|++.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998887766777777666666555
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.82 E-value=0.00045 Score=51.04 Aligned_cols=55 Identities=16% Similarity=0.265 Sum_probs=20.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 254 MVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMR 309 (494)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 309 (494)
...+...|++++|..++++..+.. +.+...+..+...+...+++++|.+.++...
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433321 1122233333333444444444444444333
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.82 E-value=0.00043 Score=51.16 Aligned_cols=96 Identities=15% Similarity=0.228 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011081 284 SYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYC 363 (494)
Q Consensus 284 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 363 (494)
++..+...+...|++++|..+++...+.. +.+...+..+...+...|++++|.+.|++..... +.+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 35667778889999999999999998764 3355788889999999999999999999988765 445578888999999
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 011081 364 RAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 364 ~~g~~~~a~~~~~~m~~~ 381 (494)
..|+.++|...+....+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999999988764
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.81 E-value=0.00092 Score=52.25 Aligned_cols=94 Identities=11% Similarity=0.106 Sum_probs=43.1
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHhHHHHHH
Q 011081 251 NALMVGFYREGAFEKVEDVWVEMARLGCEPD----CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVE--HDVVAYNTII 324 (494)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li 324 (494)
..+...+.+.|++++|...|..+.+.. |+ ...+..+...+.+.|+++.|...|+.+...... ....++..+.
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344444455555555555555554431 11 223344445555555555555555554433100 1123344444
Q ss_pred HHHHccCCHHHHHHHHHHHHhC
Q 011081 325 GGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
.++.+.|++++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 4555555555555555555444
No 155
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.04 Score=52.76 Aligned_cols=349 Identities=14% Similarity=0.068 Sum_probs=220.0
Q ss_pred hhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChh
Q 011081 80 GLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPF 159 (494)
Q Consensus 80 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (494)
+-.++.+.|+..|.....-. +++.+.|+.-..+++..|++++|..=-...++ -+..-+.
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~-------------------l~p~w~k 71 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRR-------------------LNPDWAK 71 (539)
T ss_pred cccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHh-------------------cCCchhh
Confidence 34567888999988876443 56788899999999999999888654443332 1223356
Q ss_pred hHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCC------------------------hhHH
Q 011081 160 VFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKG------------------------VISG 215 (494)
Q Consensus 160 ~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~------------------------~~~a 215 (494)
.|+....++.-.|+ +++|+..|.+-++.... +...++.+..++..... .+.+
T Consensus 72 gy~r~Gaa~~~lg~---~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~ 147 (539)
T KOG0548|consen 72 GYSRKGAALFGLGD---YEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPA 147 (539)
T ss_pred HHHHhHHHHHhccc---HHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHH
Confidence 77777777888888 99999999887775433 55556666655521100 0000
Q ss_pred HHHHHHHhcCCcccccc----------------c----------------cccccccccccc-------------CHHHH
Q 011081 216 YEIYREVFGLDSDATAG----------------I----------------GKDVKRVVRVRP-------------NVHTF 250 (494)
Q Consensus 216 ~~~~~~~~~~~~~~~~~----------------~----------------~~~~~~~~~~~p-------------~~~~~ 250 (494)
.....+....++..... + .+...+.....| -..-.
T Consensus 148 ~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~e 227 (539)
T KOG0548|consen 148 YVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKE 227 (539)
T ss_pred HHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHH
Confidence 00000111111110000 0 000011111111 11224
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHH-------H
Q 011081 251 NALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNT-------I 323 (494)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~-------l 323 (494)
-.+.++..+..++..|++-+....+.. -+..-++....+|...|.+..+...-+...+.|.+ ...-|+. +
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence 567778888889999999999888764 45555677777888888888887777766665521 2222333 3
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH-------------------------HHHHHHHHhcCCHHHHHHHHHHH
Q 011081 324 IGGFCEIGEMARAEEFFREMGLSGVESSSVTF-------------------------EHLVNGYCRAGDVDSAILVYNDM 378 (494)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-------------------------~~li~~~~~~g~~~~a~~~~~~m 378 (494)
..+|.+.++++.|+..|.+.......|+..+= -.-...+.+.|++..|...|.++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34667778899999999987766545544321 11245567889999999999999
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011081 379 CRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPT-EKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS 457 (494)
Q Consensus 379 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 457 (494)
++.+ +-|...|....-+|.+.|.+..|+.-.+..++. .|+ ...|..=..++.-..++++|.+.|.+.++. .|+
T Consensus 385 Ikr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL---~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~ 458 (539)
T KOG0548|consen 385 IKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL---DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPS 458 (539)
T ss_pred HhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--Cch
Confidence 9987 457889999999999999999999987755543 233 233433344444556788999999988865 455
Q ss_pred HHHHH
Q 011081 458 LEIYS 462 (494)
Q Consensus 458 ~~~~~ 462 (494)
..-+.
T Consensus 459 ~~e~~ 463 (539)
T KOG0548|consen 459 NAEAI 463 (539)
T ss_pred hHHHH
Confidence 44333
No 156
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.77 E-value=0.0012 Score=60.42 Aligned_cols=131 Identities=11% Similarity=0.090 Sum_probs=53.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNG-YCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGEL 397 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 397 (494)
+|..++...-+.+..+.|..+|.+..+.+ ..+...|...... |...++.+.|.++|+...+. +..+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 44444555444444555555555554332 1122222222222 11123333455555554443 223344444444444
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 398 CDKRRVFEALDILKARVVKFGLFP-TEKSYMFLIKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 398 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (494)
.+.++.+.|..+|++.+....-.. ....|...+..=.+.|+++.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555555544333221111 122444444444444555555555544443
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.71 E-value=0.0015 Score=51.07 Aligned_cols=99 Identities=18% Similarity=0.131 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 011081 354 TFEHLVNGYCRAGDVDSAILVYNDMCRKGFE--PEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFP-TEKSYMFLI 430 (494)
Q Consensus 354 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 430 (494)
++..+...+.+.|++++|.+.|+.+.+.... .....+..+...+.+.|++++|.+.++..+....-.+ ....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445555566666666666666666554211 0123444455666666666666666665444332111 133455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 011081 431 KGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
.++.+.|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5666666666666666666654
No 158
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.69 E-value=0.0013 Score=60.10 Aligned_cols=131 Identities=13% Similarity=0.138 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011081 248 HTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAV-FCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG 326 (494)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 326 (494)
.+|-.+++...+.+..+.|..+|.+..+.+ ..+...|...... |...++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468888999999989999999999998653 2234445444444 33357777799999998876 46688889999999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011081 327 FCEIGEMARAEEFFREMGLSGVESS---SVTFEHLVNGYCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 381 (494)
+.+.|+.+.|..+|++.... +.++ ...|...+..=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999876 2332 258999999999999999999999888774
No 159
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.65 E-value=0.068 Score=52.89 Aligned_cols=46 Identities=26% Similarity=0.356 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 011081 426 YMFLIKGLCEEGKMEEALKVQAEMVGK-GFEPSLEIYSAFIDGYMKE 471 (494)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~ 471 (494)
|-.|.+--...|.++.|++.--.+.+. .+-|-..+|+.|.-+.+..
T Consensus 1024 FmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~ 1070 (1189)
T KOG2041|consen 1024 FMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAV 1070 (1189)
T ss_pred HHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhh
Confidence 334444455678888888766555543 4667777777665544443
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.62 E-value=0.0044 Score=52.18 Aligned_cols=93 Identities=14% Similarity=0.194 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPD--CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTI 323 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 323 (494)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 456677788888888999999999998876532222 3567788888888999999999888887753 3356667777
Q ss_pred HHHHHccCCHHHHHHH
Q 011081 324 IGGFCEIGEMARAEEF 339 (494)
Q Consensus 324 i~~~~~~g~~~~A~~~ 339 (494)
..+|...|+...+..-
T Consensus 113 g~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 113 AVIYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHHHcCChHhHhhC
Confidence 7777777775554433
No 161
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.62 E-value=0.0016 Score=55.03 Aligned_cols=105 Identities=19% Similarity=0.323 Sum_probs=60.1
Q ss_pred CcCHhHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 011081 279 EPDCYSYSVLMAVFCE-----ERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSV 353 (494)
Q Consensus 279 ~p~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 353 (494)
..|..+|..+++.|.+ .|..+-....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~----------- 110 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQA----------- 110 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHH-----------
Confidence 4466677777777664 36667777777788888888888888888877654 3221 0111111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 011081 354 TFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRR 402 (494)
Q Consensus 354 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 402 (494)
+..-| -.+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 111 ----~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 111 ----EFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----HhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111 11234455666666666666666666666665554443
No 162
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.58 E-value=0.026 Score=50.29 Aligned_cols=185 Identities=9% Similarity=0.045 Sum_probs=113.8
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHH---HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 011081 281 DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAY---NTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEH 357 (494)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 357 (494)
+...+-.....+.+.|++++|.+.|+.+...-.. +.... -.++.+|.+.+++++|...|++..+....-...-|..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3333444555667789999999999999876322 22222 3566788899999999999999987632222233333
Q ss_pred HHHHHHh--cC---------------C---HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 011081 358 LVNGYCR--AG---------------D---VDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKF 417 (494)
Q Consensus 358 li~~~~~--~g---------------~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 417 (494)
.+.+.+. .+ + ..+|+..|+++++. |-...-..+|...+. .+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~-~l~~~ 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLV-FLKDR 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHH-HHHHH
Confidence 3444331 11 1 12344455555443 222333444444333 11110
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 418 GLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK--GFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFE 486 (494)
Q Consensus 418 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 486 (494)
. ...--.+...|.+.|.+..|..-++.+++. +.+........++.+|...|..++|..+...+..
T Consensus 174 ---l-a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 174 ---L-AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred ---H-HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 0 111124667789999999999999999976 3333466777888999999999999998876644
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.57 E-value=0.016 Score=53.19 Aligned_cols=128 Identities=15% Similarity=0.235 Sum_probs=60.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCC---cC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--Hh
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARLGCE---PD--CYSYSVLMAVFCEERRMREAEKLWEEMRD----KNVEHD--VV 318 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~---p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~~--~~ 318 (494)
|.-....|...|++++|.+.|.+..+.... +. ...|......|.+ .++++|.+.++...+ .| .++ ..
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G-~~~~aA~ 115 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAG-RFSQAAK 115 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT--HHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcC-cHHHHHH
Confidence 333456677778888887777766432111 11 1223333334433 377777766665542 22 111 22
Q ss_pred HHHHHHHHHHcc-CCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 319 AYNTIIGGFCEI-GEMARAEEFFREMGLS----GVESS--SVTFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 319 ~~~~li~~~~~~-g~~~~A~~~~~~m~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
.+..+...|... |++++|++.|++..+. | .+. ...+..+...+.+.|++++|.++|+++..
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455555555 5666666666554331 1 111 12334445555556666666666655554
No 164
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.57 E-value=0.0019 Score=54.55 Aligned_cols=105 Identities=20% Similarity=0.250 Sum_probs=68.1
Q ss_pred ccCHHHHHHHHHHHHhc-----CCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 011081 244 RPNVHTFNALMVGFYRE-----GAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVV 318 (494)
Q Consensus 244 ~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 318 (494)
..|..+|..++..|.+. |..+-....+..|.+-|+..|..+|+.|++.+=+ |.+- -..+|+.+--
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~-------- 113 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM-------- 113 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc--------
Confidence 55889999999998864 6788888899999999999999999999998765 2221 1111221111
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGD 367 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 367 (494)
-| -.+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 114 -------hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 -------HY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -------cC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11 11234455666666666666666666666666554443
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.55 E-value=0.00021 Score=52.02 Aligned_cols=20 Identities=15% Similarity=0.353 Sum_probs=8.4
Q ss_pred HHHHHHccCCHHHHHHHHHH
Q 011081 323 IIGGFCEIGEMARAEEFFRE 342 (494)
Q Consensus 323 li~~~~~~g~~~~A~~~~~~ 342 (494)
+..+|.+.|++++|..++++
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 34444444444444444433
No 166
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.54 E-value=0.0025 Score=53.40 Aligned_cols=94 Identities=14% Similarity=0.052 Sum_probs=55.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011081 282 CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEH--DVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLV 359 (494)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 359 (494)
...|..+...+...|++++|...|+........+ ...+|..+...|...|++++|++.+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3455666666666777777777777776542221 23466777777777777777777777766542 23334455555
Q ss_pred HHHH-------hcCCHHHHHHHHH
Q 011081 360 NGYC-------RAGDVDSAILVYN 376 (494)
Q Consensus 360 ~~~~-------~~g~~~~a~~~~~ 376 (494)
..+. ..|++++|...++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 5554 4555554443333
No 167
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.54 E-value=0.012 Score=47.53 Aligned_cols=93 Identities=17% Similarity=0.043 Sum_probs=49.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 011081 322 TIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKR 401 (494)
Q Consensus 322 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 401 (494)
.+..-+...|++++|..+|+-+..-+ +-+..-|..|..+|-..|++++|+..|......+. -|...+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcC
Confidence 34444455556666666665555443 33444455555555555666666666665555442 24445555555555556
Q ss_pred CHHHHHHHHHHHHHh
Q 011081 402 RVFEALDILKARVVK 416 (494)
Q Consensus 402 ~~~~a~~~~~~~~~~ 416 (494)
+.+.|.+.|+..+..
T Consensus 118 ~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 118 NVCYAIKALKAVVRI 132 (157)
T ss_pred CHHHHHHHHHHHHHH
Confidence 666665555544433
No 168
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.53 E-value=0.0031 Score=59.81 Aligned_cols=92 Identities=11% Similarity=0.025 Sum_probs=80.6
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCH
Q 011081 254 MVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEM 333 (494)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 333 (494)
...+...|++++|++.|++.++.. +-+...|..+..+|.+.|++++|+..++.+++.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 456678899999999999999875 4467788889999999999999999999998875 44778899999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 011081 334 ARAEEFFREMGLSG 347 (494)
Q Consensus 334 ~~A~~~~~~m~~~~ 347 (494)
++|...|++..+.+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998864
No 169
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.52 E-value=0.0064 Score=60.42 Aligned_cols=137 Identities=10% Similarity=0.014 Sum_probs=73.1
Q ss_pred CCCCcChHhHHHHHHHHHcC-----CChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCC--
Q 011081 190 RGLSVKVSTCNALIWEVSRG-----KGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGA-- 262 (494)
Q Consensus 190 ~g~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-- 262 (494)
.+...+...|...+++.... ++...|..+|+++.+.+|. ....|..+..++.....
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-----------------~a~a~A~la~~~~~~~~~~ 393 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-----------------FTYAQAEKALADIVRHSQQ 393 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-----------------cHHHHHHHHHHHHHHHhcC
Confidence 34556888899888875432 2367999999999887765 45555555444432211
Q ss_pred ------HhHHHHHHHHHHHc-CCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHH
Q 011081 263 ------FEKVEDVWVEMARL-GCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMAR 335 (494)
Q Consensus 263 ------~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 335 (494)
+..+.+...+.... ....+...|..+.-.+...|++++|...+++....+ |+...|..+...|...|+.++
T Consensus 394 ~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~e 471 (517)
T PRK10153 394 PLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRL 471 (517)
T ss_pred CccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHH
Confidence 11222222221111 112233444444444444555555555555555542 345555555555555555555
Q ss_pred HHHHHHHHHh
Q 011081 336 AEEFFREMGL 345 (494)
Q Consensus 336 A~~~~~~m~~ 345 (494)
|.+.|++...
T Consensus 472 A~~~~~~A~~ 481 (517)
T PRK10153 472 AADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHh
Confidence 5555555544
No 170
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.51 E-value=0.0038 Score=50.27 Aligned_cols=96 Identities=9% Similarity=-0.018 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011081 284 SYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYC 363 (494)
Q Consensus 284 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 363 (494)
....+...+...|++++|.++|+.+.... +-+..-|-.|..++-..|++++|++.|......+ +-|...+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 34445556677888888888888877664 3466667777788888888888888888887776 466777777888888
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 011081 364 RAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 364 ~~g~~~~a~~~~~~m~~~ 381 (494)
..|+.+.|.+.|+..+..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 888888888888877653
No 171
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.51 E-value=0.003 Score=59.92 Aligned_cols=92 Identities=12% Similarity=0.074 Sum_probs=80.1
Q ss_pred HHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH
Q 011081 203 IWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDC 282 (494)
Q Consensus 203 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 282 (494)
...+...|+++.|.+.|++++..++. +...|..+..+|.+.|++++|+..+++.++.. +.+.
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-----------------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~ 70 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-----------------NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLA 70 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCH
Confidence 34566779999999999999887654 77889999999999999999999999998875 4467
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011081 283 YSYSVLMAVFCEERRMREAEKLWEEMRDKN 312 (494)
Q Consensus 283 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 312 (494)
..|..+..+|...|++++|...|++..+.+
T Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 71 KAYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 788899999999999999999999998874
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.49 E-value=0.00033 Score=50.96 Aligned_cols=81 Identities=19% Similarity=0.182 Sum_probs=38.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 011081 400 KRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS-LEIYSAFIDGYMKEGNVEMAT 478 (494)
Q Consensus 400 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~ 478 (494)
.|+++.|+.++++........++...+-.+..+|.+.|++++|..++++ .+ ..++ ......+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3455555555554444432111233333455666666666666666655 21 2222 233333445566666666666
Q ss_pred HHHHH
Q 011081 479 MLRKE 483 (494)
Q Consensus 479 ~~~~~ 483 (494)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66554
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.47 E-value=0.009 Score=50.28 Aligned_cols=92 Identities=12% Similarity=0.097 Sum_probs=69.4
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011081 281 DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD--VVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHL 358 (494)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 358 (494)
....+..+...+...|++++|...|++..+.+..+. ...+..+...|.+.|++++|...+++..... +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 344677788888899999999999999886532222 4678888999999999999999999988763 3456667777
Q ss_pred HHHHHhcCCHHHHHH
Q 011081 359 VNGYCRAGDVDSAIL 373 (494)
Q Consensus 359 i~~~~~~g~~~~a~~ 373 (494)
...|...|+...+..
T Consensus 113 g~~~~~~g~~~~a~~ 127 (172)
T PRK02603 113 AVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHcCChHhHhh
Confidence 777777777544443
No 174
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.45 E-value=0.047 Score=44.93 Aligned_cols=157 Identities=11% Similarity=0.155 Sum_probs=102.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011081 287 VLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAG 366 (494)
Q Consensus 287 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 366 (494)
.+..+..+.=+.+...+-..+-. ...|++..-..|..+....|+..+|...|++....-.--|......+.++....+
T Consensus 61 ~~~~a~~q~ldP~R~~Rea~~~~--~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~ 138 (251)
T COG4700 61 TLLMALQQKLDPERHLREATEEL--AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQ 138 (251)
T ss_pred HHHHHHHHhcChhHHHHHHHHHH--hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhc
Confidence 34444445445554433222222 2367777777888888888888888888888876544556777777778888888
Q ss_pred CHHHHHHHHHHHHHCC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011081 367 DVDSAILVYNDMCRKG---FEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEAL 443 (494)
Q Consensus 367 ~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 443 (494)
++..|...++++-+.. -.|| +...+...+...|+..+|...|+..+... |+...-......+.+.|+.+++.
T Consensus 139 ~~A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~laa~g~~a~Aesafe~a~~~y---pg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 139 EFAAAQQTLEDLMEYNPAFRSPD--GHLLFARTLAAQGKYADAESAFEVAISYY---PGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred cHHHHHHHHHHHhhcCCccCCCC--chHHHHHHHHhcCCchhHHHHHHHHHHhC---CCHHHHHHHHHHHHHhcchhHHH
Confidence 8888888888887753 2333 34456677788888888888887655543 55544444445566777776666
Q ss_pred HHHHHHH
Q 011081 444 KVQAEMV 450 (494)
Q Consensus 444 ~~~~~m~ 450 (494)
.-+....
T Consensus 214 aq~~~v~ 220 (251)
T COG4700 214 AQYVAVV 220 (251)
T ss_pred HHHHHHH
Confidence 5444443
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.42 E-value=0.016 Score=53.17 Aligned_cols=158 Identities=19% Similarity=0.181 Sum_probs=69.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHh----CCCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHHh----CCCCCC--HHHHHHH
Q 011081 290 AVFCEERRMREAEKLWEEMRD----KNVEH-DVVAYNTIIGGFCEIGEMARAEEFFREMGL----SGVESS--SVTFEHL 358 (494)
Q Consensus 290 ~~~~~~g~~~~a~~~~~~m~~----~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~--~~~~~~l 358 (494)
..|-..|++++|.+.|....+ .+-.. -...|.....+|.+. ++++|.+.+++..+ .| .++ ...+..+
T Consensus 43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~l 120 (282)
T PF14938_consen 43 NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHH
Confidence 345555666666555554421 11000 112233333333333 66666665555432 12 121 1233444
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHH----CCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCC----CCCCHH-HH
Q 011081 359 VNGYCRA-GDVDSAILVYNDMCR----KGFEP--EGSTIEVLIGELCDKRRVFEALDILKARVVKFG----LFPTEK-SY 426 (494)
Q Consensus 359 i~~~~~~-g~~~~a~~~~~~m~~----~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~p~~~-~~ 426 (494)
...|... |++++|.+.|++..+ .| .+ -..++..+...+.+.|++++|.++|++.....- ...+.. .|
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 5555555 666677666666544 12 11 123344555666666666666666664433211 111111 12
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 427 MFLIKGLCEEGKMEEALKVQAEMV 450 (494)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~m~ 450 (494)
-..+-++...||...|.+.+++..
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 222334445566666666666665
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.42 E-value=0.0047 Score=51.76 Aligned_cols=96 Identities=18% Similarity=0.206 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEP--DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTI 323 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 323 (494)
....|..+...+...|++++|+..|++.......+ ...++..+...+...|++++|.+.++...... +....++..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 46677888888999999999999999997663222 23578889999999999999999999988763 3345667777
Q ss_pred HHHHH-------ccCCHHHHHHHHHH
Q 011081 324 IGGFC-------EIGEMARAEEFFRE 342 (494)
Q Consensus 324 i~~~~-------~~g~~~~A~~~~~~ 342 (494)
...|. +.|+++.|...+++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 77777 66776655554443
No 177
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.36 E-value=0.014 Score=51.87 Aligned_cols=102 Identities=16% Similarity=0.209 Sum_probs=78.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011081 291 VFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDS 370 (494)
Q Consensus 291 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 370 (494)
-..+.+++.+|+..|.+.++.. +-|.+-|..=..+|++.|.++.|++-.+.....+ +-...+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 3557788888888888888874 4567777788888888898888888887777654 4456788888888888899999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHH
Q 011081 371 AILVYNDMCRKGFEPEGSTIEVLIGE 396 (494)
Q Consensus 371 a~~~~~~m~~~~~~p~~~~~~~li~~ 396 (494)
|.+.|+..++. .|+..+|-.=+..
T Consensus 168 A~~aykKaLel--dP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHHHHHHH
Confidence 98888887764 5776666554433
No 178
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.35 E-value=0.098 Score=46.63 Aligned_cols=184 Identities=11% Similarity=0.054 Sum_probs=115.7
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH-hHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDC-YSY---SVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYN 321 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 321 (494)
+...+-.....+.+.|++++|.+.|+++... -|+. ... -.+..++.+.+++++|...+++..+........-|.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 3444444556667899999999999999886 3333 222 456678899999999999999998874332333444
Q ss_pred HHHHHHHc--cC---------------CH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011081 322 TIIGGFCE--IG---------------EM---ARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 322 ~li~~~~~--~g---------------~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 381 (494)
..+.+.+. .+ +. .+|+..|+++.+ -|-...-..+|...+..+...
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~ 173 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDR 173 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHH
Confidence 44444431 11 11 234444444444 333334455555544444321
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 382 GFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFP-TEKSYMFLIKGLCEEGKMEEALKVQAEMV 450 (494)
Q Consensus 382 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (494)
= ..--..+...|.+.|.+..|..-++..+....-.| .......++.+|...|..++|.++...+.
T Consensus 174 l----a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 L----AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred H----HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0 00112455668888999999999988777764333 34456678889999999999988877654
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.33 E-value=0.021 Score=56.82 Aligned_cols=145 Identities=12% Similarity=0.063 Sum_probs=89.4
Q ss_pred CCCCCCHhHHHHHHHHHHcc--C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHH
Q 011081 311 KNVEHDVVAYNTIIGGFCEI--G---EMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAG--------DVDSAILVYND 377 (494)
Q Consensus 311 ~g~~~~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~ 377 (494)
.+.+.|...|..++.+.... + +.++|..+|++..+.. +-....|..+..+|.... ++..+.+....
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34467888888888875432 2 3678888999888864 333445555444443321 12233333333
Q ss_pred HHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011081 378 MCRK-GFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEP 456 (494)
Q Consensus 378 m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 456 (494)
.... ....+...|..+.......|++++|...+++.+.-. |+...|..+...+...|+.++|.+.+++... +.|
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~---ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P 484 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE---MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRP 484 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCC
Confidence 3222 122344566666555566788888888887655443 6777788888888888888888888887774 355
Q ss_pred CHHHH
Q 011081 457 SLEIY 461 (494)
Q Consensus 457 ~~~~~ 461 (494)
...+|
T Consensus 485 ~~pt~ 489 (517)
T PRK10153 485 GENTL 489 (517)
T ss_pred CCchH
Confidence 55454
No 180
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.30 E-value=0.0042 Score=57.18 Aligned_cols=272 Identities=13% Similarity=0.064 Sum_probs=160.9
Q ss_pred HHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHH--HHc--CC-
Q 011081 204 WEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEM--ARL--GC- 278 (494)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m--~~~--g~- 278 (494)
.-+|+.|+......+|+.+++.+.+ ++..-...|..|.++|.-.+++++|+++...= ... |-
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-------------Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdk 91 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-------------DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDK 91 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-------------HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcch
Confidence 3578889999999999988776543 11222445777788888889999998875421 111 10
Q ss_pred CcCHhHHHHHHHHHHhcCCHHHHHHHHHH----HHhCCC-CCCHhHHHHHHHHHHccCC--------------------H
Q 011081 279 EPDCYSYSVLMAVFCEERRMREAEKLWEE----MRDKNV-EHDVVAYNTIIGGFCEIGE--------------------M 333 (494)
Q Consensus 279 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~g~-~~~~~~~~~li~~~~~~g~--------------------~ 333 (494)
.-...+-..|.+.+--.|.+++|.-.-.+ ..+.|- ......+..+...|...|+ +
T Consensus 92 lGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al 171 (639)
T KOG1130|consen 92 LGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSAL 171 (639)
T ss_pred hccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHH
Confidence 00111222344444445666665533221 122220 1123345556666655543 3
Q ss_pred HHHHHHHHHHHh----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CChhhHHHHHHHHHhcCCH
Q 011081 334 ARAEEFFREMGL----SGV-ESSSVTFEHLVNGYCRAGDVDSAILVYNDMCR----KGFE-PEGSTIEVLIGELCDKRRV 403 (494)
Q Consensus 334 ~~A~~~~~~m~~----~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~-p~~~~~~~li~~~~~~~~~ 403 (494)
+.|.++|.+=.+ .|- -.--..|..|...|.-.|+++.|+...+.-++ .|-. .....+..+..++.-.|++
T Consensus 172 ~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~f 251 (639)
T KOG1130|consen 172 ENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNF 251 (639)
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhccc
Confidence 345555543221 110 01123566666777778899999887765432 2321 2334567778888889999
Q ss_pred HHHHHHHHHHHH---hCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCH
Q 011081 404 FEALDILKARVV---KFG-LFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK-----GFEPSLEIYSAFIDGYMKEGNV 474 (494)
Q Consensus 404 ~~a~~~~~~~~~---~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g~~ 474 (494)
+.|.+.|+..+. +.| -.....+.-+|.++|.-..++++|+.++.+-+.- ...-....+.+|..+|...|..
T Consensus 252 e~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h 331 (639)
T KOG1130|consen 252 ELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEH 331 (639)
T ss_pred HhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhH
Confidence 999998875331 111 1122233446778888888899999887765421 1223467788899999999999
Q ss_pred HHHHHHHHHHHHcc
Q 011081 475 EMATMLRKEMFENQ 488 (494)
Q Consensus 475 ~~a~~~~~~m~~~~ 488 (494)
++|+.+.+.-++..
T Consensus 332 ~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 332 RKALYFAELHLRSS 345 (639)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999887766543
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.23 E-value=0.02 Score=44.39 Aligned_cols=89 Identities=17% Similarity=0.073 Sum_probs=55.7
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCcC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HhHHHHHHHHH
Q 011081 254 MVGFYREGAFEKVEDVWVEMARLGCEPD--CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD----VVAYNTIIGGF 327 (494)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~ 327 (494)
..++-..|+.++|+.+|++..+.|.... ...+-.+.+.+...|++++|..+++...... |+ ......+..++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 3455666777777777777777765543 2345556667777777777777777776542 22 22223334456
Q ss_pred HccCCHHHHHHHHHHHH
Q 011081 328 CEIGEMARAEEFFREMG 344 (494)
Q Consensus 328 ~~~g~~~~A~~~~~~m~ 344 (494)
...|+.++|+..+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 66777777777766554
No 182
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.21 E-value=0.14 Score=50.26 Aligned_cols=105 Identities=10% Similarity=0.061 Sum_probs=56.5
Q ss_pred CCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHH
Q 011081 103 HSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVD 182 (494)
Q Consensus 103 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~ 182 (494)
+....+.+-+--+..+|.+++|..+-..-+. ..| |..+- ....+.--|+..-++|.+..+.. +-+.+.
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv----~~D---W~~LA----~~ALeAL~f~~ARkAY~rVRdl~-~L~li~ 621 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVT----DTD---WRELA----MEALEALDFETARKAYIRVRDLR-YLELIS 621 (1081)
T ss_pred cccccccccchhhhhccchhhhhccccccee----cch---HHHHH----HHHHhhhhhHHHHHHHHHHhccH-HHHHHH
Confidence 3344455555566777888888654322111 111 11110 01112234556666777666622 344555
Q ss_pred HHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHH
Q 011081 183 IVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREV 222 (494)
Q Consensus 183 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 222 (494)
-++++.+.|-.|+... +...++-.|++.+|.++|.+-
T Consensus 622 EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 622 ELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence 5677888887777654 334556667777777777654
No 183
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.19 E-value=0.0068 Score=55.86 Aligned_cols=270 Identities=14% Similarity=0.084 Sum_probs=154.2
Q ss_pred HHHhcCChhcHHHHHHHHHHHHhCCCCcCh----HhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccc
Q 011081 167 CCLEVKNIEKIETCVDIVRMLMSRGLSVKV----STCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVR 242 (494)
Q Consensus 167 ~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (494)
-+++.|+ ....+.+|+..++.|-. |. ..|..|.++|.-.+++++|++....=+..... +++ ..|
T Consensus 26 RLck~gd---craGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~----lgd----klG 93 (639)
T KOG1130|consen 26 RLCKMGD---CRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARL----LGD----KLG 93 (639)
T ss_pred HHHhccc---hhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHH----hcc----hhc
Confidence 3778888 89999999999988855 43 34777788888889999999875432110000 000 000
Q ss_pred cccCHHHHHHHHHHHHhcCCHhHHHHHHHH----HHHcCC-CcCHhHHHHHHHHHHhcCC--------------------
Q 011081 243 VRPNVHTFNALMVGFYREGAFEKVEDVWVE----MARLGC-EPDCYSYSVLMAVFCEERR-------------------- 297 (494)
Q Consensus 243 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~g~-~p~~~~~~~li~~~~~~g~-------------------- 297 (494)
-..+...|.+.+--.|.+++|.-.-.+ ..+.|- ......+..|...|...|+
T Consensus 94 ---EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~a 170 (639)
T KOG1130|consen 94 ---EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSA 170 (639)
T ss_pred ---cccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHH
Confidence 011111122222223444443321111 111110 1122344445555544332
Q ss_pred HHHHHHHHHHHH----hCCC-CCCHhHHHHHHHHHHccCCHHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHhcCC
Q 011081 298 MREAEKLWEEMR----DKNV-EHDVVAYNTIIGGFCEIGEMARAEEFFREMG----LSGVE-SSSVTFEHLVNGYCRAGD 367 (494)
Q Consensus 298 ~~~a~~~~~~m~----~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~-~~~~~~~~li~~~~~~g~ 367 (494)
++.|.++|.+=. +.|- -.....|..|...|.-.|+++.|+..-+.=. +-|-+ .....+..+..++.-.|+
T Consensus 171 l~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 171 LENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc
Confidence 344555554322 1120 1123456777777778889998887655322 22211 233567788888999999
Q ss_pred HHHHHHHHHHHHH----CCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC
Q 011081 368 VDSAILVYNDMCR----KGF-EPEGSTIEVLIGELCDKRRVFEALDILKARVVKF----GLFPTEKSYMFLIKGLCEEGK 438 (494)
Q Consensus 368 ~~~a~~~~~~m~~----~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~ 438 (494)
++.|.+.|+.-.. .|- ........+|...|.-..++++|+.++.+.+.-. ...-....+.+|..+|...|.
T Consensus 251 fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~ 330 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE 330 (639)
T ss_pred cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Confidence 9999998876543 221 2244556677788888888899998877544211 112345577788999999999
Q ss_pred HHHHHHHHHHHHh
Q 011081 439 MEEALKVQAEMVG 451 (494)
Q Consensus 439 ~~~A~~~~~~m~~ 451 (494)
-++|+.+.+.-++
T Consensus 331 h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 331 HRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHHH
Confidence 9998887766554
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.13 E-value=0.0014 Score=45.33 Aligned_cols=52 Identities=13% Similarity=0.274 Sum_probs=24.1
Q ss_pred hcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 259 REGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK 311 (494)
Q Consensus 259 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 311 (494)
+.|++++|+++|+++.+.. +-+...+..+..+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555555555544432 223444444555555555555555555554444
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.13 E-value=0.037 Score=42.96 Aligned_cols=57 Identities=14% Similarity=0.204 Sum_probs=29.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 324 IGGFCEIGEMARAEEFFREMGLSGVESS--SVTFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++...
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344455555555555555555553332 22344444555555555555555555544
No 186
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.10 E-value=0.0028 Score=43.94 Aligned_cols=67 Identities=19% Similarity=0.183 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHccc
Q 011081 422 TEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEG-NVEMATMLRKEMFENQV 489 (494)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~ 489 (494)
+...|..+...+...|++++|+..|.+.++.. +-+...|..+..+|.+.| ++++|++.+++.++.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 35667778888888888888888888888752 224677778888888888 68888888888877553
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.10 E-value=0.0023 Score=44.15 Aligned_cols=64 Identities=17% Similarity=0.256 Sum_probs=52.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011081 293 CEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLV 359 (494)
Q Consensus 293 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 359 (494)
.+.|++++|.++|+.+.+.. +-+...+..+..+|.+.|++++|..+++++... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 46899999999999998874 448888889999999999999999999999887 56655555443
No 188
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.08 E-value=0.0033 Score=42.93 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=47.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 429 LIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
+...+.+.|++++|.+.|++.++.. +-+...+..+..++...|++++|..+++++++..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4456778889999999999988663 225777888888888889999999999888876553
No 189
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.069 Score=49.60 Aligned_cols=248 Identities=10% Similarity=-0.024 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHH
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVG 256 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 256 (494)
+..|+..+...++..+. ++.-|..-...+...|++++|.--.++-.+..+. ....+.-.-++
T Consensus 65 Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-----------------~~k~~~r~~~c 126 (486)
T KOG0550|consen 65 YGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-----------------FSKGQLREGQC 126 (486)
T ss_pred HHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCC-----------------ccccccchhhh
Confidence 77788888888776655 4555655566666677777777666555444332 01111222222
Q ss_pred HHhcCCHhHHHHHHH---------------HHHHcC-CCcCHhHHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCCHhH
Q 011081 257 FYREGAFEKVEDVWV---------------EMARLG-CEPDCYSYSVLM-AVFCEERRMREAEKLWEEMRDKNVEHDVVA 319 (494)
Q Consensus 257 ~~~~g~~~~a~~~~~---------------~m~~~g-~~p~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 319 (494)
+...++..+|.+.++ ...... -+|...+|..+- ..+.-.|++++|..+-....+.. ....
T Consensus 127 ~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~ 203 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNA 203 (486)
T ss_pred hhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchh
Confidence 223333333333222 111111 123334444333 34556789999988877777653 2233
Q ss_pred HHHHHH--HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH---HH----------HHHHhcCCHHHHHHHHHHHHHC---
Q 011081 320 YNTIIG--GFCEIGEMARAEEFFREMGLSGVESSSVTFEH---LV----------NGYCRAGDVDSAILVYNDMCRK--- 381 (494)
Q Consensus 320 ~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~---li----------~~~~~~g~~~~a~~~~~~m~~~--- 381 (494)
+..++. ++.-.++.+.|...|++.+..+ |+...--. +. .-..+.|++.+|.+.|.+.+..
T Consensus 204 ~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~ 281 (486)
T KOG0550|consen 204 EALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS 281 (486)
T ss_pred HHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc
Confidence 444444 4445788899999999988753 44433221 11 2235678899999999988764
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 382 GFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEK---SYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 382 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
...|+...|.....+..+.|+..+|+.--...+. .|.. .|..-..++.-.+++++|.+-++...+.
T Consensus 282 n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~-----iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 282 NKKTNAKLYGNRALVNIRLGRLREAISDCNEALK-----IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666677777777888999988887664332 3332 2222233445567788888888887765
No 190
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.12 Score=45.00 Aligned_cols=132 Identities=12% Similarity=0.134 Sum_probs=78.3
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 011081 198 TCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLG 277 (494)
Q Consensus 198 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 277 (494)
+.+.++..+.-.|.+.-...++.+..+.++ +.+......|++.-.+.|+.+.|...|++..+..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~----------------e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~ 242 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYP----------------EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVT 242 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCC----------------cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 344555666666666666666666665543 3355666677777777777777777777665543
Q ss_pred CCcCHhHHHHHHH-----HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011081 278 CEPDCYSYSVLMA-----VFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 278 ~~p~~~~~~~li~-----~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
-..|..+++.++. .|.-.+++..|...+.++...+ ..|...-|.-.-+..-.|+..+|++.++.|.+.
T Consensus 243 ~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 243 QKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444444432 3444566777777777666553 334444444333333456777777777777765
No 191
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.03 E-value=0.004 Score=42.51 Aligned_cols=55 Identities=11% Similarity=0.193 Sum_probs=28.4
Q ss_pred HHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 011081 204 WEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMAR 275 (494)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (494)
..+.+.|++++|.+.|+++++..|. +...|..+..++.+.|++++|..+|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-----------------NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-----------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555555544332 455555555555555555555555555544
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.03 E-value=0.07 Score=43.96 Aligned_cols=129 Identities=12% Similarity=0.029 Sum_probs=79.8
Q ss_pred cccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHhHHH
Q 011081 243 VRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNV-EHDVVAYN 321 (494)
Q Consensus 243 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~ 321 (494)
+.|++..-..|..+..+.|+..+|...|.+...--+.-|....-.+.++....+++..|...++.+.+... -.+..+--
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 45677777777777778888888888887776544455666666677777777777777777777766421 01223344
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011081 322 TIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAIL 373 (494)
Q Consensus 322 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 373 (494)
.+...|...|++.+|+.-|+..... -|+...-.-....+.+.|+.+++..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 5566777777777777777776654 3333322222334455555554433
No 193
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.02 E-value=0.0037 Score=43.27 Aligned_cols=61 Identities=18% Similarity=0.256 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 011081 318 VAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAG-DVDSAILVYNDMC 379 (494)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 379 (494)
.+|..+...+.+.|++++|+..|++..+.+ +-+...|..+..+|...| ++++|++.++..+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444445555555555555555544443 334444444444455554 3455555544443
No 194
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.99 E-value=0.013 Score=47.70 Aligned_cols=70 Identities=20% Similarity=0.293 Sum_probs=41.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChhh
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCR-----KGFEPEGST 389 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~ 389 (494)
+...++..+...|++++|..+.+.+.... +.+...|..+|.+|...|+..+|.++|+.+.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34455666666777777777777776654 55666777777777777777777777766543 466666554
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.95 E-value=0.021 Score=51.38 Aligned_cols=97 Identities=14% Similarity=0.147 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 011081 354 TFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEG----STIEVLIGELCDKRRVFEALDILKARVVKFGLFP-TEKSYMF 428 (494)
Q Consensus 354 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 428 (494)
.|...+..+.+.|++++|...|+.+++.. |+. ..+..+...|...|++++|...|+..+......| ....+-.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34444444455677777777777776653 332 3555566666667777777777765555442221 1233444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 429 LIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
+...+...|+.++|.++|++.++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455555666777777776666654
No 196
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.95 E-value=0.014 Score=51.83 Aligned_cols=96 Identities=14% Similarity=0.177 Sum_probs=65.5
Q ss_pred HHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCH
Q 011081 168 CLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNV 247 (494)
Q Consensus 168 ~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 247 (494)
..+.++ +++|++.|.+.++.... |.+-|..-..+|++.|.++.|.+-.+..+..++. -.
T Consensus 91 ~m~~~~---Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-----------------ys 149 (304)
T KOG0553|consen 91 LMKNKD---YQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-----------------YS 149 (304)
T ss_pred HHHhhh---HHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-----------------HH
Confidence 344555 77777777777775433 5666666677777777777777777777666544 56
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHH
Q 011081 248 HTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYS 286 (494)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 286 (494)
.+|..|..+|...|++++|++.|++.++. .|+-.+|-
T Consensus 150 kay~RLG~A~~~~gk~~~A~~aykKaLel--dP~Ne~~K 186 (304)
T KOG0553|consen 150 KAYGRLGLAYLALGKYEEAIEAYKKALEL--DPDNESYK 186 (304)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHhhhcc--CCCcHHHH
Confidence 67777777777777777777777766653 56655554
No 197
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.90 E-value=0.018 Score=45.17 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=27.3
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011081 383 FEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKG 432 (494)
Q Consensus 383 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 432 (494)
..|+..+..+++.+|+..+++..|+++++......++..+..+|..|++-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555555555543
No 198
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.18 Score=43.98 Aligned_cols=144 Identities=13% Similarity=0.081 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHH----
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNT---- 322 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~---- 322 (494)
....+.++.++.-.|.+.-...++.+.++..-+.+......|++.-.+.|+.+.|...|+...+..-..|..+.+.
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 3445677777777888888888888888876566777778888888889999999999987765432334333333
Q ss_pred -HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 011081 323 -IIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVL 393 (494)
Q Consensus 323 -li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 393 (494)
....|.-.+++..|...|.+....+ +.|....|.-.-+..-.|+...|++.++.|.+.. |...+-+++
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~es~ 325 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHESV 325 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--CccchhhhH
Confidence 3345666778888888888887765 4555555554445555678888888888888763 444444433
No 199
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.16 Score=45.51 Aligned_cols=102 Identities=13% Similarity=0.187 Sum_probs=55.9
Q ss_pred cCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcC---CChhHHHHHHHHHhcCCcccc
Q 011081 154 CGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRG---KGVISGYEIYREVFGLDSDAT 230 (494)
Q Consensus 154 ~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~ 230 (494)
...+...|..|..+|...|+ +..|...|....+...+ ++..+..+..++... ....++.++|++++..++.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~---~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-- 225 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGR---ASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-- 225 (287)
T ss_pred CCCCchhHHHHHHHHHHhcc---hhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc--
Confidence 34455666666666666666 66666666666553221 444444444433222 1234556666666555443
Q ss_pred cccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 011081 231 AGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARL 276 (494)
Q Consensus 231 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 276 (494)
|+.+...|...+.+.|++.+|...|+.|.+.
T Consensus 226 ---------------~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 226 ---------------NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred ---------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 5555555556666666666666666666654
No 200
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.86 E-value=0.065 Score=43.59 Aligned_cols=71 Identities=20% Similarity=0.297 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHhH
Q 011081 248 HTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRD-----KNVEHDVVA 319 (494)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~ 319 (494)
.+...++..+...|++++|..+...+.... +-|...|..+|.+|...|+...|.++|+.+.+ .|+.|+..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344555566666667777777666666654 44566666667777777777666666665532 355555543
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.84 E-value=0.025 Score=50.88 Aligned_cols=61 Identities=13% Similarity=0.022 Sum_probs=24.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 320 YNTIIGGFCEIGEMARAEEFFREMGLSG--VESSSVTFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
+..+...|...|++++|...|+.+.+.- -+.....+-.+...+...|+.++|..+|+.+++
T Consensus 183 ~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 183 NYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444444444444444444321 011122223333334444444444444444444
No 202
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.083 Score=47.23 Aligned_cols=99 Identities=12% Similarity=0.064 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHhHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEE---RRMREAEKLWEEMRDKNVEHDVVAYNT 322 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~g~~~~~~~~~~ 322 (494)
|...|-.|...|...|+.+.|..-|....+.. .++...+..+..++... ..-.++..+|+++.... +-|+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 66667777777777777777776666665542 23444444444443332 23355666666666653 335555556
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhC
Q 011081 323 IIGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 323 li~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
|...+...|++.+|...|+.|...
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 666666677777777777776665
No 203
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.83 E-value=0.42 Score=44.42 Aligned_cols=105 Identities=18% Similarity=0.265 Sum_probs=61.6
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcc
Q 011081 251 NALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEI 330 (494)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 330 (494)
+.-|.-+...|+...|.++-.+.. .||..-|-..+.+++..++|++-.++-.. .-++.-|-..+.+|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 334455555666666666655543 45666666677777777777665544321 12346666677777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011081 331 GEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVY 375 (494)
Q Consensus 331 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 375 (494)
|+..+|..+...+ .+..-+..|.+.|++.+|.+.-
T Consensus 251 ~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 251 GNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 7776666666552 1234556666666666665543
No 204
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.81 E-value=0.29 Score=42.39 Aligned_cols=60 Identities=10% Similarity=0.087 Sum_probs=33.6
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCC--CcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 252 ALMVGFYREGAFEKVEDVWVEMARLGC--EPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK 311 (494)
Q Consensus 252 ~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 311 (494)
.....+.+.|++.+|...|+.+...-- +--....-.++.++.+.|+++.|...++...+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334455566777777777777765410 111233445566666777777777777776554
No 205
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.78 E-value=0.033 Score=43.69 Aligned_cols=99 Identities=13% Similarity=0.072 Sum_probs=64.6
Q ss_pred hHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 011081 196 VSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMAR 275 (494)
Q Consensus 196 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (494)
..++.++|.++++.|+++....+.+..-..+.+....-.. ........|+..+..+++.+|+..|++..|+++++...+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~-~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGD-YPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCc-cCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4566677777777777777777776664443321100000 122234678888888888888888888888888888765
Q ss_pred c-CCCcCHhHHHHHHHHHHhc
Q 011081 276 L-GCEPDCYSYSVLMAVFCEE 295 (494)
Q Consensus 276 ~-g~~p~~~~~~~li~~~~~~ 295 (494)
. +++.+..+|..|+.-+...
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHh
Confidence 4 6666777888777655443
No 206
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.78 E-value=0.46 Score=44.16 Aligned_cols=112 Identities=14% Similarity=0.059 Sum_probs=85.3
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 011081 317 VVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGE 396 (494)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 396 (494)
..+.+..|.-+...|+...|.++-.+.. .|+..-|-..+.+++..++|++-.++-.. . -.+.-|..++.+
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHH
Confidence 3456666777788889888888877774 68888999999999999999887765432 1 234778889999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 397 LCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEM 449 (494)
Q Consensus 397 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (494)
|.+.|+..+|..++.. ..+..-+..|.++|++.+|.+.-.+.
T Consensus 247 ~~~~~~~~eA~~yI~k-----------~~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPK-----------IPDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHCCCHHHHHHHHHh-----------CChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999999888762 12255677888999999988775554
No 207
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.75 E-value=0.47 Score=44.66 Aligned_cols=187 Identities=14% Similarity=0.022 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHHcCCCc---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHhHHHHHHHHHHc---cCCHH
Q 011081 264 EKVEDVWVEMARLGCEP---DCYSYSVLMAVFCEERRMREAEKLWEEMRDKN---VEHDVVAYNTIIGGFCE---IGEMA 334 (494)
Q Consensus 264 ~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~ 334 (494)
++..+.+.+|...=-.| +..+...++-+|....+++...++.+.+...- +.-+..+--...-++.+ .|+.+
T Consensus 120 ~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre 199 (374)
T PF13281_consen 120 KELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDRE 199 (374)
T ss_pred HHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHH
Confidence 34444555554431112 22333455557889999999999999987651 12233333455566677 89999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-HH
Q 011081 335 RAEEFFREMGLSGVESSSVTFEHLVNGYCRA---------GDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRR-VF 404 (494)
Q Consensus 335 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-~~ 404 (494)
+|++++..+......++..+|..+...|-.. ...++|...|.+.-+. .||...--.++..+.-.|. .+
T Consensus 200 ~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~ 277 (374)
T PF13281_consen 200 KALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFE 277 (374)
T ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCccc
Confidence 9999999966666688888998888776432 2356677777765443 2444332222222333332 21
Q ss_pred ---HHHHHH---HHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 405 ---EALDIL---KARVVKFG---LFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 405 ---~a~~~~---~~~~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
+..++- ...+.+.| -..+...+.+++.++.-.|+.++|.+..++|.+.
T Consensus 278 ~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 278 TSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred chHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 112211 11222222 2234455667777777788888888888888754
No 208
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.72 E-value=0.5 Score=43.84 Aligned_cols=251 Identities=13% Similarity=0.086 Sum_probs=145.3
Q ss_pred cCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHH--HHHhcCCHhHHHHHHHHHHHcCCCcCHhH-
Q 011081 208 RGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMV--GFYREGAFEKVEDVWVEMARLGCEPDCYS- 284 (494)
Q Consensus 208 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~g~~p~~~~- 284 (494)
-.|+-..|.++-.+..+.- .-|....-.++. .-.-.|+++.|.+-|+.|.+. |....
T Consensus 96 gAGda~lARkmt~~~~~ll-----------------ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRll 155 (531)
T COG3898 96 GAGDASLARKMTARASKLL-----------------SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLL 155 (531)
T ss_pred ccCchHHHHHHHHHHHhhh-----------------hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHH
Confidence 3567777777766654321 224444444443 334569999999999999863 22221
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHHH--------
Q 011081 285 -YSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSG-VESSSVT-------- 354 (494)
Q Consensus 285 -~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~-------- 354 (494)
...|.-..-+.|+.+.|.++-+..-..- +--...+.+.+...|..|+++.|+++++.-.+.. +.++..-
T Consensus 156 GLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLt 234 (531)
T COG3898 156 GLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLT 234 (531)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Confidence 2233333456788888888777765542 2245677888888888888888888887654321 1222110
Q ss_pred -------------------------------HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 011081 355 -------------------------------FEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRV 403 (494)
Q Consensus 355 -------------------------------~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 403 (494)
-..-..++.+.|+..++-.+++.+-+....|+... +..+.+.|+
T Consensus 235 AkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~----lY~~ar~gd- 309 (531)
T COG3898 235 AKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL----LYVRARSGD- 309 (531)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH----HHHHhcCCC-
Confidence 01223456667777777777777776655554321 112233333
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHH
Q 011081 404 FEALDILKARVVKFGLFPT-EKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGY-MKEGNVEMATMLR 481 (494)
Q Consensus 404 ~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~a~~~~ 481 (494)
.+++-++..-+-..++|| ..+-..+..+-...|++..|..--+... ...|....|..|-+.- ...|+-.+++..+
T Consensus 310 -ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~--r~~pres~~lLlAdIeeAetGDqg~vR~wl 386 (531)
T COG3898 310 -TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA--REAPRESAYLLLADIEEAETGDQGKVRQWL 386 (531)
T ss_pred -cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh--hhCchhhHHHHHHHHHhhccCchHHHHHHH
Confidence 233333322222223343 3344555666667777777776666555 3477777777776654 3448888888887
Q ss_pred HHHHHc
Q 011081 482 KEMFEN 487 (494)
Q Consensus 482 ~~m~~~ 487 (494)
-+..+.
T Consensus 387 Aqav~A 392 (531)
T COG3898 387 AQAVKA 392 (531)
T ss_pred HHHhcC
Confidence 776654
No 209
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.68 E-value=0.22 Score=43.13 Aligned_cols=181 Identities=14% Similarity=0.113 Sum_probs=99.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHH
Q 011081 285 YSVLMAVFCEERRMREAEKLWEEMRDKNV--EHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSS--VTFEHLVN 360 (494)
Q Consensus 285 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~ 360 (494)
.-.....+...|++++|.+.|+.+...-. +--....-.++.++.+.|++++|...|++..+.- |+. .-+...+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y--P~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY--PNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhhHHHHH
Confidence 33445566778889999999988876521 1123455667788888899999998888887652 222 22222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011081 361 GYCRAGDVDSAILVYNDMCRKGFEP---EGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEG 437 (494)
Q Consensus 361 ~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 437 (494)
+.+......... ....+... -...+..++.-|-...-..+|...+.. +... . ...--.+...|.+.|
T Consensus 86 g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~-l~~~---l-a~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 86 GLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAE-LRNR---L-AEHELYIARFYYKRG 155 (203)
T ss_dssp HHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHH-HHHH---H-HHHHHHHHHHHHCTT
T ss_pred HHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHH-HHHH---H-HHHHHHHHHHHHHcc
Confidence 222211111110 00000000 112344555555555666666555442 2110 0 111223667899999
Q ss_pred CHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHH
Q 011081 438 KMEEALKVQAEMVGKGFEPS----LEIYSAFIDGYMKEGNVEMATM 479 (494)
Q Consensus 438 ~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~ 479 (494)
.+..|..-++.+++. -|+ ......++.+|.+.|..+.+..
T Consensus 156 ~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 156 KYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp -HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred cHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 999999999999986 444 3456778889999998875543
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.55 E-value=0.0098 Score=41.67 Aligned_cols=57 Identities=18% Similarity=0.082 Sum_probs=30.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 432 GLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
.|.+.+++++|.++++.+++.. +.+...|.....++.+.|++++|.+.++...+.++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4455555555555555555431 22344444455555555555555555555555444
No 211
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.43 E-value=0.43 Score=45.86 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=23.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011081 358 LVNGYCRAGDVDSAILVYNDMCRKGFE-PEGSTIEVLIGELCDKRRVFEALDILK 411 (494)
Q Consensus 358 li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~ 411 (494)
+..++.+.|+.++|.+.|++|.+.... -.......|+.++...+.+.++..++.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 333444445555555555555443211 112233444455555555555544444
No 212
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.38 E-value=0.27 Score=38.15 Aligned_cols=140 Identities=18% Similarity=0.173 Sum_probs=83.1
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011081 328 CEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEAL 407 (494)
Q Consensus 328 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 407 (494)
.-.|..++..++..+...+ .+..-+|.+|--....-+-+-..++++.. |--.|.. ..|++....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis----------~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDIS----------KCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GG----------G-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCch----------hhcchHHHH
Confidence 3457778888888877653 34455666665555444444444444444 3222322 234444444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011081 408 DILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFEN 487 (494)
Q Consensus 408 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 487 (494)
..+- .+ ..+...+...++.+...|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++++.-++
T Consensus 77 ~C~~-~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 77 ECYA-KR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHH-HT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHH-Hh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4432 11 134455677788888999999999999998764 3778888888999999999999999999999998
Q ss_pred ccc
Q 011081 488 QVR 490 (494)
Q Consensus 488 ~~~ 490 (494)
|++
T Consensus 150 G~k 152 (161)
T PF09205_consen 150 GLK 152 (161)
T ss_dssp T-H
T ss_pred chH
Confidence 875
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.31 E-value=0.03 Score=39.14 Aligned_cols=53 Identities=8% Similarity=0.024 Sum_probs=23.5
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 327 FCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
|.+.+++++|.++++.+...+ +.+...|......+.+.|++++|.+.|+...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444444444444432 23333444444444444444444444444443
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.21 E-value=1.1 Score=42.16 Aligned_cols=161 Identities=9% Similarity=0.029 Sum_probs=84.6
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcC---CCcCHhHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 252 ALMVGFYREGAFEKVEDVWVEMARLG---CEPDCYSYSVLMAVFCE---ERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 252 ~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
.++-+|....+++..+++++.|.... +.-....-....-++.+ .|+.++|++++..+....-.++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34445777777777777777776541 11112222233344455 6777777777777555444667777777776
Q ss_pred HHHcc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHH---HH-HHHCCC---CC
Q 011081 326 GFCEI---------GEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDV----DSAILVY---ND-MCRKGF---EP 385 (494)
Q Consensus 326 ~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~---~~-m~~~~~---~p 385 (494)
.|-.. ...++|...|.+.-+. .||..+-..++..+...|.. .+..++- .. +.+.|. ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 65321 1355666666665443 24433322222223333321 1223332 11 112332 23
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 386 EGSTIEVLIGELCDKRRVFEALDILKARV 414 (494)
Q Consensus 386 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 414 (494)
|-..+..++.+..-.|+.++|.+..+++.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~ 332 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAF 332 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44555666777777777777777776444
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.21 E-value=0.015 Score=41.32 Aligned_cols=60 Identities=25% Similarity=0.419 Sum_probs=25.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLS----GV-ESS-SVTFEHLVNGYCRAGDVDSAILVYNDM 378 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m 378 (494)
+|+.+...|...|++++|+..|++..+. |- .|+ ..++..+...|...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444444444444443321 10 011 233444444445555555555544443
No 216
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=1.1 Score=42.00 Aligned_cols=166 Identities=11% Similarity=0.046 Sum_probs=108.9
Q ss_pred cCHHHHHHHH-HHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHhH--
Q 011081 245 PNVHTFNALM-VGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAV--FCEERRMREAEKLWEEMRDKNVEHDVVA-- 319 (494)
Q Consensus 245 p~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~~~~~~-- 319 (494)
|.-.+|-.+- .++.-.|++++|...--..++.. ....+..++++ +.-.++.+.|...|++.+..+ |+...
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHH
Confidence 5455555543 45566788999888777766543 12233334433 344678889999998888764 33221
Q ss_pred -----------HHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011081 320 -----------YNTIIGGFCEIGEMARAEEFFREMGLS---GVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEP 385 (494)
Q Consensus 320 -----------~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 385 (494)
+..=.+-..+.|++..|.+.|.+.+.. .+.++...|........+.|+.++|+.--++..+.+
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--- 317 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--- 317 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---
Confidence 222234456889999999999998765 345566667777777888999999999888877653
Q ss_pred ChhhHHHH--HHHHHhcCCHHHHHHHHHHHHHhCC
Q 011081 386 EGSTIEVL--IGELCDKRRVFEALDILKARVVKFG 418 (494)
Q Consensus 386 ~~~~~~~l--i~~~~~~~~~~~a~~~~~~~~~~~~ 418 (494)
+......+ ..++.-.+++++|.+-+++.++...
T Consensus 318 ~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 318 SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 12222222 2444556889999999888776543
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.16 E-value=0.023 Score=40.35 Aligned_cols=63 Identities=16% Similarity=0.291 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----C-CCcC-HhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARL----G-CEPD-CYSYSVLMAVFCEERRMREAEKLWEEMR 309 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 309 (494)
..+|+.+...|...|++++|+..|++..+. | -.|+ ..++..+...|...|++++|++++++..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345666666777777777777776665533 1 0111 3345555566666666666666665543
No 218
>PRK15331 chaperone protein SicA; Provisional
Probab=96.15 E-value=0.22 Score=40.58 Aligned_cols=88 Identities=8% Similarity=-0.081 Sum_probs=59.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011081 291 VFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDS 370 (494)
Q Consensus 291 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 370 (494)
-+...|++++|..+|.-+...+ .-|..-|..|..++-..+++++|+..|......+ .-|...+-.+..+|...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHH
Confidence 3445778888888887776654 2345556666777777777888887777665544 2344445556677777777777
Q ss_pred HHHHHHHHHH
Q 011081 371 AILVYNDMCR 380 (494)
Q Consensus 371 a~~~~~~m~~ 380 (494)
|...|...++
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 7777777766
No 219
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.04 E-value=0.24 Score=47.35 Aligned_cols=66 Identities=9% Similarity=0.090 Sum_probs=57.8
Q ss_pred ccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 244 RPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDC----YSYSVLMAVFCEERRMREAEKLWEEMRDK 311 (494)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 311 (494)
..+...|+.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|.+.|++++|...+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 447889999999999999999999999998876 4654 35889999999999999999999999875
No 220
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.94 E-value=1.3 Score=47.23 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=43.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh--HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011081 288 LMAVFCEERRMREAEKLWEEMRDKNVEHDVV--AYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRA 365 (494)
Q Consensus 288 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 365 (494)
.+.+|-.+|+|.+|..+..++... .+.. +-..|+.-+...+++-+|-++..+.... ..-.+..|++.
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka 1039 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKA 1039 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhH
Confidence 445566666666666666555422 1111 1245666666677776776666665432 12234455566
Q ss_pred CCHHHHHHHHHHH
Q 011081 366 GDVDSAILVYNDM 378 (494)
Q Consensus 366 g~~~~a~~~~~~m 378 (494)
..+++|+.+-...
T Consensus 1040 ~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1040 KEWEEALRVASKA 1052 (1265)
T ss_pred hHHHHHHHHHHhc
Confidence 6677776665543
No 221
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.78 E-value=0.29 Score=46.76 Aligned_cols=65 Identities=3% Similarity=-0.146 Sum_probs=34.0
Q ss_pred ChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcCh--HhHHHHHHHHHcCCChhHHHHHHHHHhc
Q 011081 157 APFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKV--STCNALIWEVSRGKGVISGYEIYREVFG 224 (494)
Q Consensus 157 ~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 224 (494)
++..++.+..+|.+.|+ +++|+..|++.++....... .+|..+..+|...|+.++|.+.++++++
T Consensus 74 ~a~a~~NLG~AL~~lGr---yeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGR---VKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555555555565 66666666555553322110 2355555555555666666555555543
No 222
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.64 E-value=2.9 Score=42.37 Aligned_cols=115 Identities=13% Similarity=0.051 Sum_probs=73.8
Q ss_pred CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 011081 314 EHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVL 393 (494)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 393 (494)
.-...+.+--+.-+...|+..+|.++-.+.+ -||...|-.=+.+++..+++++-+++-+.+. ...-|.-.
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PF 750 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPF 750 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhH
Confidence 3444455666666677777777777776665 5777777777777777777777666555442 13345556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 394 IGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAE 448 (494)
Q Consensus 394 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 448 (494)
+.+|.+.|+.++|.+++- .. ++. .-...+|.+.|++.+|.++-.+
T Consensus 751 Ve~c~~~~n~~EA~KYip-rv------~~l---~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIP-RV------GGL---QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHhcccHHHHhhhhh-cc------CCh---HHHHHHHHHhccHHHHHHHHHH
Confidence 677778888888877765 11 111 1456677777777777665443
No 223
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=1.6 Score=39.17 Aligned_cols=145 Identities=10% Similarity=0.078 Sum_probs=86.8
Q ss_pred HHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHh
Q 011081 204 WEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCY 283 (494)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 283 (494)
......|++.+|..+|.......+. +...--.+..+|...|+.+.|..++..+...--.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-----------------~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~ 204 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-----------------NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAH 204 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-----------------cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHH
Confidence 3456678888888888888776544 45566677888888888888888888876542121222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHH
Q 011081 284 SYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGV-ESSSVTFEHLVNGY 362 (494)
Q Consensus 284 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~ 362 (494)
....-|..+.+.....+...+-.+.-.. +-|...-..+...|...|+.+.|.+.+-.+..++. .-|...-..++..+
T Consensus 205 ~l~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f 282 (304)
T COG3118 205 GLQAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELF 282 (304)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHH
Confidence 2223344444444444444444444433 33666666777777777888877777666655421 23334445555555
Q ss_pred HhcCC
Q 011081 363 CRAGD 367 (494)
Q Consensus 363 ~~~g~ 367 (494)
.-.|.
T Consensus 283 ~~~g~ 287 (304)
T COG3118 283 EAFGP 287 (304)
T ss_pred HhcCC
Confidence 55553
No 224
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.61 E-value=1.1 Score=41.21 Aligned_cols=202 Identities=9% Similarity=0.001 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHH-------HHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC---
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVW-------VEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK-NVEH--- 315 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~-------~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~--- 315 (494)
..++..+..+.++.|.+++++..- .+..+. ..--..|-.+.+++-+.-++.+++.+-..-... |..+
T Consensus 43 f~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds--~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~ 120 (518)
T KOG1941|consen 43 FRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDS--DFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQL 120 (518)
T ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccc
Confidence 345666667777777777655432 111111 111234555666666666666666655544332 2222
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC
Q 011081 316 DVVAYNTIIGGFCEIGEMARAEEFFREMGLSG-----VESSSVTFEHLVNGYCRAGDVDSAILVYNDMCR----KGFEPE 386 (494)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~ 386 (494)
.....-++..++...+.++++++.|+...+-. .-.....+..|...|.+..++++|.-+.....+ .++.--
T Consensus 121 ~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~ 200 (518)
T KOG1941|consen 121 GGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDW 200 (518)
T ss_pred cchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCch
Confidence 11233446666777778888888888765421 111234677788888888888888766655433 232222
Q ss_pred hhhH-----HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 387 GSTI-----EVLIGELCDKRRVFEALDILKARVVKFGLFPTEKS----YMFLIKGLCEEGKMEEALKVQAEMV 450 (494)
Q Consensus 387 ~~~~-----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~----~~~li~~~~~~g~~~~A~~~~~~m~ 450 (494)
..-| ..+.-++...|++..|.+.-++.++-.-..-|..+ ...+.+.|-..|+.+.|+.-|++..
T Consensus 201 ~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 201 SLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred hHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2222 23345566778888888877766653322234333 4456677888888888887776654
No 225
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.55 E-value=0.12 Score=45.52 Aligned_cols=101 Identities=20% Similarity=0.202 Sum_probs=77.6
Q ss_pred ccCHHHHHHHHHHHHhc-----CCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcC----------------CHHHHH
Q 011081 244 RPNVHTFNALMVGFYRE-----GAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEER----------------RMREAE 302 (494)
Q Consensus 244 ~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----------------~~~~a~ 302 (494)
+.|-.+|-+++..|.+. +.++-....++.|.+-|+..|..+|+.|++.+-+.. +-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 45788888888877654 567777778889999999999999999998865533 235688
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHccCCH-HHHHHHHHHHH
Q 011081 303 KLWEEMRDKNVEHDVVAYNTIIGGFCEIGEM-ARAEEFFREMG 344 (494)
Q Consensus 303 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 344 (494)
+++++|...|+.||-.+-..|++++.+.+.. .+..++.-.|.
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 9999999999999999999999999887753 33444444443
No 226
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.52 E-value=2.1 Score=42.45 Aligned_cols=185 Identities=12% Similarity=0.094 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccccccc--ccCHHHHHHHH
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRV--RPNVHTFNALM 254 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~li 254 (494)
+.-+..+|.-+... ++| ....++....-.|+-+.+++.+.+..+...- .+. .--.-.|+.++
T Consensus 173 v~~G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i------------~~~la~L~LL~y~~~~ 236 (468)
T PF10300_consen 173 VYFGFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENI------------RSPLAALVLLWYHLVV 236 (468)
T ss_pred HHHHHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCc------------chHHHHHHHHHHHHHH
Confidence 55556666666653 232 3446777778888999999998887553211 000 11234466666
Q ss_pred HHHHh----cCCHhHHHHHHHHHHHcCCCcCHhHHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCCHhHHHHHHHH
Q 011081 255 VGFYR----EGAFEKVEDVWVEMARLGCEPDCYSYSVL-MAVFCEERRMREAEKLWEEMRDKN---VEHDVVAYNTIIGG 326 (494)
Q Consensus 255 ~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~ 326 (494)
..++. ..+.+.|.+++..+.+. -|+...|... .+.+...|++++|.+.|+...... .+.....+--+.-.
T Consensus 237 ~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~ 314 (468)
T PF10300_consen 237 PSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWC 314 (468)
T ss_pred HHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHH
Confidence 65554 35678899999999876 5776665433 355677899999999999765321 01233445566777
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCH-------HHHHHHHHHHHH
Q 011081 327 FCEIGEMARAEEFFREMGLSGVESSSVTFEHLVN-GYCRAGDV-------DSAILVYNDMCR 380 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~-~~~~~g~~-------~~a~~~~~~m~~ 380 (494)
+.-.++|++|.+.|..+.+.. .-+..+|.-+.. ++...|+. ++|.++|.++..
T Consensus 315 ~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 315 HMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888999999999999998764 333444444433 34556777 888888887654
No 227
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.49 E-value=0.13 Score=45.34 Aligned_cols=44 Identities=14% Similarity=0.193 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 011081 406 ALDILKARVVKFGLFPTEKSYMFLIKGLCEEGK-MEEALKVQAEMV 450 (494)
Q Consensus 406 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~ 450 (494)
++++++ .|+..|+.||..+-..|++++.+.+- ..+..++...|-
T Consensus 142 ~I~vLe-qME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 142 AIKVLE-QMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHH-HHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 566666 67888888888888888888877664 334444444443
No 228
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.43 E-value=1.8 Score=39.86 Aligned_cols=130 Identities=16% Similarity=0.328 Sum_probs=83.8
Q ss_pred HhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHh--cC----CHHHHHHHHHHHHhCCC---CCCHhHHHHHHHHHHccCCH
Q 011081 263 FEKVEDVWVEMARLGCEPDCYSYSVLMAVFCE--ER----RMREAEKLWEEMRDKNV---EHDVVAYNTIIGGFCEIGEM 333 (494)
Q Consensus 263 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g----~~~~a~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~ 333 (494)
+++.+.+++.|.+.|+..+..+|-+..-.... .. ....|..+|+.|++... .++...+.+|+.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 55678899999999999888777664433333 22 34678999999988632 3455566666554 33433
Q ss_pred ----HHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCChhhHHHHH
Q 011081 334 ----ARAEEFFREMGLSGVESSS--VTFEHLVNGYCRAGD--VDSAILVYNDMCRKGFEPEGSTIEVLI 394 (494)
Q Consensus 334 ----~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~li 394 (494)
+.++.+|+.+...|...+- ...+.++..+..... ...+.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 5677788888887765543 233333333322222 447788888888888887777665543
No 229
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.42 E-value=4.7 Score=43.27 Aligned_cols=112 Identities=21% Similarity=0.277 Sum_probs=68.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELC 398 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 398 (494)
.|.+..+.+...+.+++|.-.|+..-+ ....+.+|..+|+|.+|+.+..++.... .--..+-..|+.-+.
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLV 1010 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHH
Confidence 344455555566777777777765432 1235677888888888888887764321 101112256777778
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 399 DKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEM 449 (494)
Q Consensus 399 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (494)
..++.-+|-++..+...+ +.-.+..|++...+++|.++....
T Consensus 1011 e~~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HcccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 888888888877643322 233445566667777777766544
No 230
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.33 E-value=0.88 Score=43.11 Aligned_cols=128 Identities=13% Similarity=0.148 Sum_probs=55.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHHH
Q 011081 320 YNTIIGGFCEIGEMARAEEFFREMGLSG-VESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGST-IEVLIGEL 397 (494)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~ 397 (494)
|...++...+..-.+.|..+|-+..+.| +.+++..+++++..++. |+...|..+|+--... -||... .+..+..+
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fL 476 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHH
Confidence 4444444444444555555555555544 34444555555554433 3444455555433322 122222 22333444
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 398 CDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMV 450 (494)
Q Consensus 398 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (494)
...++-..|..+|+..+.+..-.--...|..+|.-=..-|++..+..+=++|.
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 44455555555554332221100112345555554444555555444444444
No 231
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.44 Score=44.53 Aligned_cols=94 Identities=14% Similarity=0.142 Sum_probs=51.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHc-----CCCc---------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011081 252 ALMVGFYREGAFEKVEDVWVEMARL-----GCEP---------DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDV 317 (494)
Q Consensus 252 ~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 317 (494)
.-.+.|.+.|++..|..-|++.... +..+ -..++..|.-.|.+.+++..|++.-+..+..+ ++|+
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~ 291 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNV 291 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCch
Confidence 3346788889999998888875432 1111 11233444445555555555555555555443 3444
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011081 318 VAYNTIIGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
...--=..+|...|+++.|...|+++++.
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 44444555555555555555555555543
No 232
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.33 E-value=2.2 Score=38.94 Aligned_cols=157 Identities=10% Similarity=-0.052 Sum_probs=101.1
Q ss_pred hcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHhHHHHHHHHHHccCCHHH
Q 011081 259 REGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK---NVEHDVVAYNTIIGGFCEIGEMAR 335 (494)
Q Consensus 259 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~ 335 (494)
..|+..+|-..++++.+. .+.|...+...=.+|.-.|+.+.-...++++... +++.....-..+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 357777777778877765 3556667777777888888888877777777543 322223333444455667888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 336 AEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK---GFEPEGSTIEVLIGELCDKRRVFEALDILKA 412 (494)
Q Consensus 336 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 412 (494)
|++.-++..+.+ +.|...-.+....+...|+..++.++..+-... +--.-..-|-...-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 888888877765 566667777777777888888888776653221 1000111222333345556888888888887
Q ss_pred HHHhC
Q 011081 413 RVVKF 417 (494)
Q Consensus 413 ~~~~~ 417 (494)
.+-+.
T Consensus 273 ei~k~ 277 (491)
T KOG2610|consen 273 EIWKR 277 (491)
T ss_pred HHHHH
Confidence 66543
No 233
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.29 E-value=2.8 Score=39.96 Aligned_cols=114 Identities=12% Similarity=0.104 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHH----HHHHh---cCCHHHHHHHHHHHHHhCCCCCCHH----HHHHHHHH--HH
Q 011081 368 VDSAILVYNDMCRKGFEPEGSTIEVLI----GELCD---KRRVFEALDILKARVVKFGLFPTEK----SYMFLIKG--LC 434 (494)
Q Consensus 368 ~~~a~~~~~~m~~~~~~p~~~~~~~li----~~~~~---~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~~--~~ 434 (494)
-++|+++++..++-. .-|..+-|.+. .+|.+ ...+.+-+++- ..+.+.|+.|-.. .-|.|.++ +.
T Consensus 396 dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe-~fi~e~gl~~i~i~e~eian~LaDAEyLy 473 (549)
T PF07079_consen 396 DEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLE-DFITEVGLTPITISEEEIANFLADAEYLY 473 (549)
T ss_pred cHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHHhcCCCcccccHHHHHHHHHHHHHHH
Confidence 667777777776632 12333333222 22222 22333344433 3566778776433 44555444 45
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 435 EEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMF 485 (494)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 485 (494)
..|++.++.-.-..+. .+.|++.+|.-+.-+.....++++|..++..+-
T Consensus 474 sqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred hcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 6789998876666655 478999999988888888999999999987653
No 234
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.26 E-value=1.2 Score=35.68 Aligned_cols=43 Identities=7% Similarity=0.077 Sum_probs=19.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011081 322 TIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRA 365 (494)
Q Consensus 322 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 365 (494)
.++..+.+.+.......+++.+...+ ..+....+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34444444444445555555444443 23444444555554443
No 235
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.26 E-value=1.9 Score=37.91 Aligned_cols=61 Identities=15% Similarity=0.150 Sum_probs=44.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 428 FLIKGLCEEGKMEEALKVQAEMVGKGFEPS---LEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
.+.+-|.+.|.+..|..-+++|++. .+-+ ...+-.+..+|...|..++|.+.-+-+..+-+
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p 235 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYP 235 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Confidence 4556788999999999999999886 3333 34455566788899999998888666555433
No 236
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.20 E-value=1.1 Score=34.84 Aligned_cols=131 Identities=12% Similarity=0.168 Sum_probs=55.3
Q ss_pred hcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHH
Q 011081 259 REGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEE 338 (494)
Q Consensus 259 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 338 (494)
-.|..++..++..+..... +..-||-+|--....-+-+...++++.+-+. .|... +|+......
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~----------C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISK----------CGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-----------S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCchh----------hcchHHHHH
Confidence 3577778888888877642 4555666665555554545555555544321 12221 222222222
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011081 339 FFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILK 411 (494)
Q Consensus 339 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 411 (494)
.+-.+ ..+.......+......|+-++-.+++.++.+.+ .++......+..+|.+.|+..++-+++.
T Consensus 78 C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~ 144 (161)
T PF09205_consen 78 CYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLK 144 (161)
T ss_dssp HHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 22111 1112223333444455555555555555554322 3444455555555555555555555554
No 237
>PRK15331 chaperone protein SicA; Provisional
Probab=95.20 E-value=0.58 Score=38.18 Aligned_cols=94 Identities=15% Similarity=0.058 Sum_probs=74.1
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcc
Q 011081 251 NALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEI 330 (494)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 330 (494)
-.....+...|++++|..+|.-+...+ .-+..-+..|...+-..+++++|...|......+ .-|...+--...+|...
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l 118 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHh
Confidence 344455678999999999999987754 2355556677777777899999999999876654 34666667788999999
Q ss_pred CCHHHHHHHHHHHHhC
Q 011081 331 GEMARAEEFFREMGLS 346 (494)
Q Consensus 331 g~~~~A~~~~~~m~~~ 346 (494)
|+.+.|...|+...+.
T Consensus 119 ~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 119 RKAAKARQCFELVNER 134 (165)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 9999999999988763
No 238
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.11 E-value=1.3 Score=40.74 Aligned_cols=131 Identities=15% Similarity=0.241 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc--cCC----HHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCC-
Q 011081 298 MREAEKLWEEMRDKNVEHDVVAYNTIIGGFCE--IGE----MARAEEFFREMGLSGV---ESSSVTFEHLVNGYCRAGD- 367 (494)
Q Consensus 298 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g~----~~~A~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~- 367 (494)
+++...+++.|.+.|+..+..+|-+....... ..+ ..+|..+|+.|++... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45566788888888888887777663333322 222 4578888999987632 2344555555544 3333
Q ss_pred ---HHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhcCC--HHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011081 368 ---VDSAILVYNDMCRKGFEPEGS--TIEVLIGELCDKRR--VFEALDILKARVVKFGLFPTEKSYMFLIK 431 (494)
Q Consensus 368 ---~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 431 (494)
.+.+..+|+.+.+.|+..+.. ....++..+..... +..+.++++ .+++.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~-~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYN-ALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHH-HHHHcCCccccccccHHHH
Confidence 356777888888877765432 33333332222222 345666666 7778888888877765543
No 239
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.96 E-value=0.53 Score=41.68 Aligned_cols=61 Identities=18% Similarity=0.144 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 392 VLIGELCDKRRVFEALDILKARVVKFGLFPTE-KSYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 392 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
.|...+...|++++|..+|....+..+-.|.. ..+--|.....+.|+.++|..+|++..+.
T Consensus 183 WLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 183 WLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34444445555555555554444444333322 34444445555555555555555555543
No 240
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.96 E-value=4.9 Score=40.89 Aligned_cols=111 Identities=18% Similarity=0.224 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011081 352 SVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIK 431 (494)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 431 (494)
.-+.+--+.-+...|+-.+|.++-.+.. -||...|-.-+.+++..+++++-+++-++ . ..+.-|...+.
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAks-k------ksPIGy~PFVe 752 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKS-K------KSPIGYLPFVE 752 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhc-c------CCCCCchhHHH
Confidence 3444555666677788888888877653 57888888889999999999988777542 1 22556888899
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011081 432 GLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRK 482 (494)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 482 (494)
+|.+.|+.++|.+++.+.- | .. -...+|.+.|++.+|.++.-
T Consensus 753 ~c~~~~n~~EA~KYiprv~--~---l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVG--G---LQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHhcccHHHHhhhhhccC--C---hH----HHHHHHHHhccHHHHHHHHH
Confidence 9999999999999988663 1 11 56788889999988887643
No 241
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.85 E-value=3.8 Score=39.10 Aligned_cols=132 Identities=17% Similarity=0.160 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 011081 353 VTFEHLVNGYCRAGDVDSAILVYNDMCRKG-FEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSY-MFLI 430 (494)
Q Consensus 353 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~li 430 (494)
..|...+..-.+..-++.|..+|-+..+.| +.+++..+++++..++ .|+..-|..+|+--|... ||...| +-.+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHHH
Confidence 445667777777777889999999999988 5678888999998766 677888999998777765 444333 4566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 431 KGLCEEGKMEEALKVQAEMVGKGFEPS--LEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
..+.+.++-+.|..+|+..+++ +..+ ..+|..+|+--..-|+...+..+-+.|.+.-+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 7778889999999999976654 3334 57899999988899999888888777776544
No 242
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.83 E-value=1.4 Score=35.06 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=36.8
Q ss_pred HccCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 011081 328 CEIGEMARAEEFFREMGLSG--VESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELC 398 (494)
Q Consensus 328 ~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 398 (494)
.+.|++++|.+.|+.+..+- -+-....-..++.+|.+.+++++|...+++.++....-..+-|...+.+++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 45566666666666665541 022334445556666666666666666666666443222233444444433
No 243
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.83 E-value=1.1 Score=34.81 Aligned_cols=91 Identities=15% Similarity=0.100 Sum_probs=57.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCC
Q 011081 291 VFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVT---FEHLVNGYCRAGD 367 (494)
Q Consensus 291 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~ 367 (494)
+.+..|+++.|++.|.+.+..- +.....||.-..++.-.|+.++|++=+++..+..-..+... |..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4556677777777777766552 34666777777777777777777777777665421222222 2233345666777
Q ss_pred HHHHHHHHHHHHHCC
Q 011081 368 VDSAILVYNDMCRKG 382 (494)
Q Consensus 368 ~~~a~~~~~~m~~~~ 382 (494)
.+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777776665
No 244
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.81 E-value=1 Score=34.93 Aligned_cols=91 Identities=10% Similarity=0.093 Sum_probs=71.0
Q ss_pred HHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHh-
Q 011081 205 EVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCY- 283 (494)
Q Consensus 205 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~- 283 (494)
+++..|+.+.|++.|.+.+...|. ....||.-..++.-.|+.++|++=+++..+..-.....
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-----------------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trta 114 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-----------------RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTA 114 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-----------------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHH
Confidence 567889999999999999876543 78889999999999999999999999887753122222
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011081 284 --SYSVLMAVFCEERRMREAEKLWEEMRDKN 312 (494)
Q Consensus 284 --~~~~li~~~~~~g~~~~a~~~~~~m~~~g 312 (494)
.|.--...|...|+-+.|..=|+..-+.|
T Consensus 115 cqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 115 CQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 33444456778899999999898887776
No 245
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.79 E-value=1.7 Score=34.85 Aligned_cols=83 Identities=13% Similarity=0.133 Sum_probs=34.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011081 288 LMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGD 367 (494)
Q Consensus 288 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 367 (494)
++..+.+.+.......+++.+...+ ..+....+.++..|++.+ .++..+.++. ..+......++..|.+.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 3344444444444444444444443 234444444444444432 2222333321 1112223334455555555
Q ss_pred HHHHHHHHHHH
Q 011081 368 VDSAILVYNDM 378 (494)
Q Consensus 368 ~~~a~~~~~~m 378 (494)
++++..++..+
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555543
No 246
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.78 Score=42.95 Aligned_cols=92 Identities=12% Similarity=0.075 Sum_probs=61.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC-----CCC---------CCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 011081 289 MAVFCEERRMREAEKLWEEMRDK-----NVE---------HDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVT 354 (494)
Q Consensus 289 i~~~~~~g~~~~a~~~~~~m~~~-----g~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 354 (494)
.+.|.+.|++..|..-|+..... +.. .-..+++.+..+|.+.+++..|++.-...++.+ ++|+..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 34678899999999888876532 111 122345666667777777777777777766665 566666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011081 355 FEHLVNGYCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 355 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 381 (494)
.---..+|...|+++.|...|+.+++.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 666666677777777777777777664
No 247
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.76 E-value=1.6 Score=43.33 Aligned_cols=92 Identities=15% Similarity=0.129 Sum_probs=57.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------
Q 011081 386 EGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLE------ 459 (494)
Q Consensus 386 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------ 459 (494)
+..+...+...+.+...+..|-++|.+ |. | ...+++.....+++.+|..+-+..-+ +.||+.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k-~g------D---~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqw 813 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLK-MG------D---LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQW 813 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHH-hc------c---HHHHhhheeecccchHhHhhhhhCcc--ccccccchHHHH
Confidence 344444455555556666667777763 21 1 24566777777888888877776653 344421
Q ss_pred -----HHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 460 -----IYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 460 -----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
-|..--.+|.+.|+..+|.++++++....+
T Consensus 814 LAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred hhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 233344578888999999999988876543
No 248
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.72 E-value=2 Score=35.40 Aligned_cols=136 Identities=14% Similarity=0.204 Sum_probs=65.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 011081 338 EFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKF 417 (494)
Q Consensus 338 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 417 (494)
++++.+.+.+++|+...+..+++.+.+.|++.. +..++..++-+|.......+-.+. +....+.++--+|++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh
Confidence 444445555666666666666666666665433 333344445555444443332222 22222333322233221
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc
Q 011081 418 GLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQ 488 (494)
Q Consensus 418 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 488 (494)
+ ..+..++..+...|++-+|.++....... +......++.+..+.+|...-..+++-..+++
T Consensus 89 ~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 89 G-----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred h-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 1 13455556666667776666666654211 11222345555556666555555555554443
No 249
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.57 E-value=2.8 Score=36.33 Aligned_cols=225 Identities=17% Similarity=0.073 Sum_probs=137.2
Q ss_pred cCCHhHHHHHHHHHHHcCCC-cCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhHHHHHHHHHHccCCHHHHH
Q 011081 260 EGAFEKVEDVWVEMARLGCE-PDCYSYSVLMAVFCEERRMREAEKLWEEMRDK-NVEHDVVAYNTIIGGFCEIGEMARAE 337 (494)
Q Consensus 260 ~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~ 337 (494)
.+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555555666555544321 12456667777777778888777777776642 22445566667777777777788888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 338 EFFREMGLSGVESSSVTFEHLVN-GYCRAGDVDSAILVYNDMCRKGF--EPEGSTIEVLIGELCDKRRVFEALDILKARV 414 (494)
Q Consensus 338 ~~~~~m~~~~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 414 (494)
+.+.........+ ......... .+...|++++|...+........ ......+......+...++.+.+...+...+
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8887777653222 122222223 67778888888888888755221 1123333344444566778888888877555
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc
Q 011081 415 VKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS-LEIYSAFIDGYMKEGNVEMATMLRKEMFENQ 488 (494)
Q Consensus 415 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 488 (494)
...... ....+..+...+...++++.|...+...... .|+ ...+..+...+...|..+++...+.+..+..
T Consensus 195 ~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 195 KLNPDD-DAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred hhCccc-chHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 443210 3556667777777777888888888887754 343 4444445555556667777777777766543
No 250
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=3.6 Score=37.03 Aligned_cols=122 Identities=14% Similarity=0.125 Sum_probs=60.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011081 291 VFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDS 370 (494)
Q Consensus 291 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 370 (494)
.....|++.+|..+|+...... +-+...--.++.+|...|+.+.|..++..+....-.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3455677777777777666553 224455566677777777777777777766443211111111222333333333333
Q ss_pred HHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 011081 371 AILVYNDMCRKGFEP-EGSTIEVLIGELCDKRRVFEALDILKARVVK 416 (494)
Q Consensus 371 a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 416 (494)
...+-...-. .| |...-..+...+...|+.++|++.+-..+++
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3333333222 22 3444444555555566666666555544443
No 251
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.41 E-value=1.5 Score=42.85 Aligned_cols=58 Identities=19% Similarity=0.246 Sum_probs=25.9
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011081 316 DVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 382 (494)
+...|..|.....+.|+++-|++.|.+.. -|..|+-.|.-.|+.+.-.++.+.....|
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 34445555555555555555555544432 13334444444455444444444444443
No 252
>PRK11906 transcriptional regulator; Provisional
Probab=94.40 E-value=3.7 Score=39.57 Aligned_cols=164 Identities=8% Similarity=-0.003 Sum_probs=106.8
Q ss_pred hHH--HHHHHHHHhc-----CCHHHHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHc---------cCCHHHHHHHHHHHH
Q 011081 283 YSY--SVLMAVFCEE-----RRMREAEKLWEEMRDK-NVEHD-VVAYNTIIGGFCE---------IGEMARAEEFFREMG 344 (494)
Q Consensus 283 ~~~--~~li~~~~~~-----g~~~~a~~~~~~m~~~-g~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~ 344 (494)
..| ..++.+.... ...+.|..+|.+.... .+.|+ ...|..+..++.. ..+..+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555555442 2346788888888722 22443 4444444443332 234556777888888
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH
Q 011081 345 LSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPE-GSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTE 423 (494)
Q Consensus 345 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 423 (494)
+.+ +-|......+..+....++++.|..+|++....+ || ..+|......+.-.|+.++|.+.+++.++-...+.-.
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 776 6788888888888888888999999999988764 43 4455555555677899999999998767654443344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 424 KSYMFLIKGLCEEGKMEEALKVQAEMV 450 (494)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (494)
......++.|+.. .++.|.+++.+-.
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~~~~ 434 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYYKET 434 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHhhcc
Confidence 4444555566654 5788888876543
No 253
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.39 E-value=1.5 Score=34.87 Aligned_cols=79 Identities=13% Similarity=0.079 Sum_probs=55.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcC--CCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcc
Q 011081 253 LMVGFYREGAFEKVEDVWVEMARLG--CEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEI 330 (494)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 330 (494)
-.....+.|++++|.+.|+.+...- -+-...+--.|+.+|.+.+++++|...+++.++.......+-|-..+.+++..
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 3445567899999999999887751 12233456678889999999999999999998875433345566666665544
Q ss_pred C
Q 011081 331 G 331 (494)
Q Consensus 331 g 331 (494)
.
T Consensus 96 ~ 96 (142)
T PF13512_consen 96 E 96 (142)
T ss_pred H
Confidence 3
No 254
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.38 E-value=2 Score=42.06 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHCCChhHHHHHH
Q 011081 106 SSYATIIHILSRARLIGPARDVI 128 (494)
Q Consensus 106 ~~~~~li~~~~~~~~~~~a~~~~ 128 (494)
.-.+.+++.+-+.|..+.|+.+.
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~ 318 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFV 318 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHS
T ss_pred hHHHHHHHHHHHCCCHHHHHhhc
Confidence 34666667676777666666543
No 255
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.31 E-value=0.84 Score=40.47 Aligned_cols=100 Identities=17% Similarity=0.185 Sum_probs=75.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-HHHHHH
Q 011081 389 TIEVLIGELCDKRRVFEALDILKARVVKFG---LFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK-GFEPS-LEIYSA 463 (494)
Q Consensus 389 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~-~~~~~~ 463 (494)
.|+.-+.. .+.|++..|.+.|...++... ..|+ .+-.|..++...|++++|..+|..+.+. +-.|. +..+--
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~n--A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPN--AYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccch--hHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 46655554 456778888888887776542 2233 4456889999999999999999999875 22232 467778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHccccc
Q 011081 464 FIDGYMKEGNVEMATMLRKEMFENQVRQ 491 (494)
Q Consensus 464 li~~~~~~g~~~~a~~~~~~m~~~~~~p 491 (494)
|..+..+.|+.++|...|+++.+.-|.-
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 8888999999999999999999876653
No 256
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.29 E-value=3.9 Score=40.53 Aligned_cols=163 Identities=12% Similarity=0.055 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCC-CCcCh------HhHHHHHHHHHc----CCChhHHHHHHHHHhcCCc
Q 011081 159 FVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRG-LSVKV------STCNALIWEVSR----GKGVISGYEIYREVFGLDS 227 (494)
Q Consensus 159 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g-~~~~~------~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~ 227 (494)
-.+..+++..+=.|+ -+.+++.+....+.+ +. .+ ..|+..+..++. ..+.+.|.++++.+...
T Consensus 189 p~~~kll~~vGF~gd---R~~GL~~L~~~~~~~~i~-~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~-- 262 (468)
T PF10300_consen 189 PKVLKLLSFVGFSGD---RELGLRLLWEASKSENIR-SPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR-- 262 (468)
T ss_pred HHHHHHHhhcCcCCc---HHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--
Confidence 344556666667777 888888888776633 22 22 234455544443 34678899999999764
Q ss_pred ccccccccccccccccccCHHHHHHHH-HHHHhcCCHhHHHHHHHHHHHcC---CCcCHhHHHHHHHHHHhcCCHHHHHH
Q 011081 228 DATAGIGKDVKRVVRVRPNVHTFNALM-VGFYREGAFEKVEDVWVEMARLG---CEPDCYSYSVLMAVFCEERRMREAEK 303 (494)
Q Consensus 228 ~~~~~~~~~~~~~~~~~p~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~a~~ 303 (494)
-|+...|...- +.+...|++++|++.|++..... -+.....+--+.-.+.-..+|++|.+
T Consensus 263 ----------------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 263 ----------------YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred ----------------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 45666665543 56677899999999999765421 11223345556667888999999999
Q ss_pred HHHHHHhCCCCCCHhHHHHHH-HHHHccCCH-------HHHHHHHHHHH
Q 011081 304 LWEEMRDKNVEHDVVAYNTII-GGFCEIGEM-------ARAEEFFREMG 344 (494)
Q Consensus 304 ~~~~m~~~g~~~~~~~~~~li-~~~~~~g~~-------~~A~~~~~~m~ 344 (494)
.|..+.+.. .-+..+|.-+. .++...|+. ++|.++|.+..
T Consensus 327 ~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 327 YFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 999998863 22333333332 334456777 77888887764
No 257
>PRK11906 transcriptional regulator; Provisional
Probab=94.04 E-value=4.6 Score=39.01 Aligned_cols=159 Identities=10% Similarity=0.066 Sum_probs=92.5
Q ss_pred HhH--HHHHHHHHcCC-----ChhHHHHHHHHHh---cCCcccccccccccccccccccCHHHHHHHHHHHHh-------
Q 011081 197 STC--NALIWEVSRGK-----GVISGYEIYREVF---GLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYR------- 259 (494)
Q Consensus 197 ~~~--~~ll~~~~~~~-----~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~------- 259 (494)
..| ..++++..... ..+.|+.+|.+.. +.+|. ....|..+..++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~-----------------~a~a~~~lA~~h~~~~~~g~~ 314 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTL-----------------KTECYCLLAECHMSLALHGKS 314 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcc-----------------cHHHHHHHHHHHHHHHHhcCC
Confidence 445 55555554422 3568888999997 54433 24444444333322
Q ss_pred --cCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHH
Q 011081 260 --EGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAE 337 (494)
Q Consensus 260 --~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 337 (494)
..+..+|.++-+...+.+ .-|......+..+..-.++++.|..+|++....+ +....+|........-+|+.++|.
T Consensus 315 ~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~ 392 (458)
T PRK11906 315 ELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEAR 392 (458)
T ss_pred CchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 223455666777777665 4566666667776677777888888888877763 223445555555556678888888
Q ss_pred HHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 338 EFFREMGLSGVESSS---VTFEHLVNGYCRAGDVDSAILVYND 377 (494)
Q Consensus 338 ~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~ 377 (494)
+.+++..+. .|.. ......++.|+..+ .++|..+|-+
T Consensus 393 ~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 393 ICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 888875543 2322 22233344555443 4556665543
No 258
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.80 E-value=6.9 Score=40.44 Aligned_cols=176 Identities=16% Similarity=0.148 Sum_probs=106.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHH----HHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLM----AVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li----~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
...-+...++...++-|+.+-+.- + .|..+...++ +-+.+.|++++|...|-+-... ++| ..+|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 344566667777777777766432 2 2333333333 3455678999988877766543 122 23566
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 011081 326 GFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFE 405 (494)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 405 (494)
-|....+..+-..+++.+.+.|+ .+...-+.|+.+|.+.++.++-.++.+.-. .|.. ..-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 66677777777788888888874 455566778888988888887776666543 3321 1123445566666677777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 406 ALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEM 449 (494)
Q Consensus 406 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (494)
|..+-.+ .+ -+......+ +-..|++++|++++..+
T Consensus 482 a~~LA~k----~~--~he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 482 AELLATK----FK--KHEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHH----hc--cCHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 7665431 11 123333333 33567788888887765
No 259
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.76 E-value=0.68 Score=41.68 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=40.2
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH--
Q 011081 198 TCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMAR-- 275 (494)
Q Consensus 198 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-- 275 (494)
++..++..+..+|+.+.+.+.+++....++. +...|..+|.+|.+.|+...|+..|+++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-----------------~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~ 217 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-----------------DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL 217 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-----------------chHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 3445555555566666666666666555443 555666666666666666666666655543
Q ss_pred ---cCCCcCHhHHH
Q 011081 276 ---LGCEPDCYSYS 286 (494)
Q Consensus 276 ---~g~~p~~~~~~ 286 (494)
.|+.|...+..
T Consensus 218 ~edlgi~P~~~~~~ 231 (280)
T COG3629 218 AEELGIDPAPELRA 231 (280)
T ss_pred hhhcCCCccHHHHH
Confidence 24555444433
No 260
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.75 E-value=0.83 Score=41.11 Aligned_cols=60 Identities=15% Similarity=0.195 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011081 284 SYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMG 344 (494)
Q Consensus 284 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 344 (494)
++..++..+...|+++.+...++++.... +-+...|..+|.+|.+.|+...|+..|+++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 44445555555555555555555554443 3344455555555555555555555555443
No 261
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.65 E-value=0.14 Score=29.92 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 461 YSAFIDGYMKEGNVEMATMLRKEMFE 486 (494)
Q Consensus 461 ~~~li~~~~~~g~~~~a~~~~~~m~~ 486 (494)
|..|...|.+.|++++|++++++.+.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666666666666666443
No 262
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.29 E-value=0.33 Score=29.85 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=9.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh
Q 011081 322 TIIGGFCEIGEMARAEEFFREMGL 345 (494)
Q Consensus 322 ~li~~~~~~g~~~~A~~~~~~m~~ 345 (494)
.+...|.+.|++++|.++|++..+
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333344444444444444444433
No 263
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.22 E-value=6.6 Score=35.91 Aligned_cols=162 Identities=11% Similarity=0.090 Sum_probs=79.6
Q ss_pred HcCCChhHHHHHHHHHhcCCccccccccccccccccccc------CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----
Q 011081 207 SRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRP------NVHTFNALMVGFYREGAFEKVEDVWVEMARL---- 276 (494)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---- 276 (494)
.+.|+.+.|..++.+....... ..| ....||.-...+.+..++++|..++++..+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~--------------~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~ 69 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNS--------------LDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKP 69 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhc--------------CCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhh
Confidence 3567777777777776432200 122 2333454444444443777777776665432
Q ss_pred ----CCCcCH-----hHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011081 277 ----GCEPDC-----YSYSVLMAVFCEERRMR---EAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMG 344 (494)
Q Consensus 277 ----g~~p~~-----~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 344 (494)
...|+. .+...++.+|...+..+ +|.++.+.+.... .-...++-.-+..+.+.++.+.+.+.+.+|.
T Consensus 70 ~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 70 GKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred hhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 112222 24455666666655544 3444444553332 2224444455555555677777777777776
Q ss_pred hCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCC
Q 011081 345 LSGVESSSVTFEHLVNGY---CRAGDVDSAILVYNDMCRKGFEP 385 (494)
Q Consensus 345 ~~~~~~~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~~~~~p 385 (494)
..- .-....+..++..+ ... ....|...++.++...+.|
T Consensus 149 ~~~-~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~ 190 (278)
T PF08631_consen 149 RSV-DHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKS 190 (278)
T ss_pred Hhc-ccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCC
Confidence 652 21223344433333 222 2234555555554443433
No 264
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.21 E-value=8.9 Score=37.38 Aligned_cols=60 Identities=10% Similarity=0.157 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011081 284 SYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 284 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
...+++..+.....+.-.+.+-.+|...| .+-..|..++++|..+ ..++-..+++++.+.
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~ 127 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY 127 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh
Confidence 33444444444444444455555554443 2444445555555544 334444445444443
No 265
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.07 E-value=11 Score=38.16 Aligned_cols=246 Identities=14% Similarity=0.054 Sum_probs=120.1
Q ss_pred hhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccc
Q 011081 159 FVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVK 238 (494)
Q Consensus 159 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 238 (494)
.+|+.+...++.... +++|.+.|..-.. . ...+.++.+..++++-..+.+.+
T Consensus 797 ~A~r~ig~~fa~~~~---We~A~~yY~~~~~------~---e~~~ecly~le~f~~LE~la~~L---------------- 848 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMME---WEEAAKYYSYCGD------T---ENQIECLYRLELFGELEVLARTL---------------- 848 (1189)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHhccc------h---HhHHHHHHHHHhhhhHHHHHHhc----------------
Confidence 456666666666665 6666666654321 1 12344555544444443333333
Q ss_pred cccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 011081 239 RVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVV 318 (494)
Q Consensus 239 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 318 (494)
+-+....-.|..++...|..++|.+.|-+- + .| ...+..|...++|.+|.++-+...- |.+.
T Consensus 849 -----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~avelaq~~~l----~qv~ 910 (1189)
T KOG2041|consen 849 -----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWGEAVELAQRFQL----PQVQ 910 (1189)
T ss_pred -----CcccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHHHHHHHhccc----hhHH
Confidence 224555556667777777777776665332 2 12 1244556666666666655543321 1111
Q ss_pred H--------------HHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCCHH----HHHHH-HHHH----------Hhc
Q 011081 319 A--------------YNTIIGGFCEIGEMARAEEFFREMGLS----GVESSSV----TFEHL-VNGY----------CRA 365 (494)
Q Consensus 319 ~--------------~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~----~~~~l-i~~~----------~~~ 365 (494)
+ .---|..+.+.|++=+|-+++.+|.+. +.++-.. ...++ +.-+ -+.
T Consensus 911 tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~ 990 (1189)
T KOG2041|consen 911 TLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKH 990 (1189)
T ss_pred HHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 1 012345566677666666666666432 3322211 11111 1111 123
Q ss_pred CCHHHHHHHHHHHHHC-------CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011081 366 GDVDSAILVYNDMCRK-------GFEP--EGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEE 436 (494)
Q Consensus 366 g~~~~a~~~~~~m~~~-------~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 436 (494)
|..++|..+++.-.-. +..- ....|-.|.+--...|.++.|++.--..-.-..+-|....|+.+.-+-|..
T Consensus 991 g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~ 1070 (1189)
T KOG2041|consen 991 GFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAV 1070 (1189)
T ss_pred CcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhh
Confidence 5555565544432211 0111 122333444445567888888776432222234567777888776666655
Q ss_pred CCHHHHHHHHHHHH
Q 011081 437 GKMEEALKVQAEMV 450 (494)
Q Consensus 437 g~~~~A~~~~~~m~ 450 (494)
..+...-+.|-++.
T Consensus 1071 raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1071 RAFGTCSKAFMKLE 1084 (1189)
T ss_pred hhhhhhHHHHHHHH
Confidence 55555555554444
No 266
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.05 E-value=5.7 Score=34.73 Aligned_cols=84 Identities=18% Similarity=0.229 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCE 329 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 329 (494)
|.-...+|....++++|...+.+..+- .+-+...|. ..+.++.|.-+.++|.+. +--+..|+--..+|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 444455677777888887766665431 122222221 122334444444444433 1123344555556666
Q ss_pred cCCHHHHHHHHHHH
Q 011081 330 IGEMARAEEFFREM 343 (494)
Q Consensus 330 ~g~~~~A~~~~~~m 343 (494)
+|.++.|-..+++.
T Consensus 104 ~GspdtAAmaleKA 117 (308)
T KOG1585|consen 104 CGSPDTAAMALEKA 117 (308)
T ss_pred hCCcchHHHHHHHH
Confidence 66666555555443
No 267
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.92 E-value=0.31 Score=29.97 Aligned_cols=31 Identities=23% Similarity=0.159 Sum_probs=24.0
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhcCCcc
Q 011081 198 TCNALIWEVSRGKGVISGYEIYREVFGLDSD 228 (494)
Q Consensus 198 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 228 (494)
++..+...|...|++++|.++|+++++..|+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4667777888888888888888888776654
No 268
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.87 E-value=7.5 Score=35.67 Aligned_cols=151 Identities=11% Similarity=0.016 Sum_probs=105.7
Q ss_pred cCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHH-
Q 011081 208 RGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYS- 286 (494)
Q Consensus 208 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~- 286 (494)
..|+..+|...++++++.-| .|..+++-.=.+|.-.|+...-...+++.... ..+|...|.
T Consensus 115 ~~g~~h~a~~~wdklL~d~P-----------------tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sY 176 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYP-----------------TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSY 176 (491)
T ss_pred ccccccHHHHHHHHHHHhCc-----------------hhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHH
Confidence 45788888888888876543 38888888888999999999988888888754 134443333
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC----CCCCHHHHHHHH
Q 011081 287 ---VLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSG----VESSSVTFEHLV 359 (494)
Q Consensus 287 ---~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~~~~~li 359 (494)
.+.-++..+|-+++|++.-++..+.+ +.|..+-.++...+--.|++.++.++..+-...= +.....-|.. .
T Consensus 177 v~GmyaFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~-A 254 (491)
T KOG2610|consen 177 VHGMYAFGLEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT-A 254 (491)
T ss_pred HHHHHHhhHHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH-H
Confidence 23334556899999999988888765 5577777888888888999999998876543221 0111111222 2
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 011081 360 NGYCRAGDVDSAILVYNDM 378 (494)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~m 378 (494)
-.+...+.++.|+++|+.-
T Consensus 255 l~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 255 LFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HhhhcccchhHHHHHHHHH
Confidence 3344558899999999753
No 269
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.85 E-value=6.1 Score=34.55 Aligned_cols=207 Identities=13% Similarity=0.018 Sum_probs=105.8
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 011081 198 TCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLG 277 (494)
Q Consensus 198 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 277 (494)
.|..-..+|...+++++|...+.+..+. .+-|...|.+ ...++.|.-+.++|.+..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-----------------yEnnrslfhA-------AKayEqaamLake~~kls 88 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-----------------YENNRSLFHA-------AKAYEQAAMLAKELSKLS 88 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-----------------HHhcccHHHH-------HHHHHHHHHHHHHHHHhH
Confidence 3444556777778888888777766421 1223333332 223455666666665432
Q ss_pred CCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC---C--CCCCH
Q 011081 278 CEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS---G--VESSS 352 (494)
Q Consensus 278 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~--~~~~~ 352 (494)
--+..|+--...|..+|..+.|-..++..-+. ..+.++++|+++|++...- + ...-.
T Consensus 89 --Evvdl~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~ 150 (308)
T KOG1585|consen 89 --EVVDLYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAF 150 (308)
T ss_pred --HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 12345566667777888877776666654331 1223344444444443211 0 00111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CCCHHH
Q 011081 353 VTFEHLVNGYCRAGDVDSAILVYNDMCR----KGFEPE-GSTIEVLIGELCDKRRVFEALDILKARVVKFGL--FPTEKS 425 (494)
Q Consensus 353 ~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~p~~~~ 425 (494)
..+..+-..+.+...+++|-..+..-.. -.--++ ...|...|-.+....++..|...++......++ .-+..+
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~ 230 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRS 230 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHH
Confidence 2233444555666666665554433211 111111 123555555666677888888887743222221 234456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 011081 426 YMFLIKGLCEEGKMEEALKVQA 447 (494)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~ 447 (494)
...|+.+| ..|+.+++.+++.
T Consensus 231 lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 231 LENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHh-ccCCHHHHHHHHc
Confidence 67777766 4577777666543
No 270
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.78 E-value=8.6 Score=36.11 Aligned_cols=316 Identities=14% Similarity=0.080 Sum_probs=193.9
Q ss_pred ccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHH--CCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChh
Q 011081 82 KNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSR--ARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPF 159 (494)
Q Consensus 82 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (494)
-..|..+-+.|..-.+..| |-++-.++.. .|+-..|+.+-.+..+. ...|-.-.-.++.
T Consensus 66 w~sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~l--lssDqepLIhlLe---------- 126 (531)
T COG3898 66 WESPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKL--LSSDQEPLIHLLE---------- 126 (531)
T ss_pred HhCcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhh--hhccchHHHHHHH----------
Confidence 3567777788877654443 5555555544 46677777665543321 1111111111111
Q ss_pred hHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHh----HHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccc
Q 011081 160 VFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVST----CNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGK 235 (494)
Q Consensus 160 ~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 235 (494)
-++-.-.|+ .+.|.+-|+.|.. |+.+ ...|.-.-.+.|..+.|...-+...+..+.
T Consensus 127 -----AQaal~eG~---~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~------- 186 (531)
T COG3898 127 -----AQAALLEGD---YEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ------- 186 (531)
T ss_pred -----HHHHHhcCc---hHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-------
Confidence 122334577 9999999999976 3333 333333445778889998888887654433
Q ss_pred ccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CCcCHhH--HHHHHHHHHh---cCCHHHHHHHHHHHH
Q 011081 236 DVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLG-CEPDCYS--YSVLMAVFCE---ERRMREAEKLWEEMR 309 (494)
Q Consensus 236 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~--~~~li~~~~~---~g~~~~a~~~~~~m~ 309 (494)
-...+.+.+...+..|+|+.|+++++.-+... +.++..- -..|+.+-.. ..+...|...-.+..
T Consensus 187 ----------l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~ 256 (531)
T COG3898 187 ----------LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEAN 256 (531)
T ss_pred ----------CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Confidence 45778899999999999999999999876543 3444332 2233322111 234455555544444
Q ss_pred hCCCCCCHhHH-HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCC-C
Q 011081 310 DKNVEHDVVAY-NTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCR-KGFEP-E 386 (494)
Q Consensus 310 ~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p-~ 386 (494)
+. .|+.+-- ..-..++.+.|+..++-.+++.+-+..-.|+ .+. +..+.+.|+ .++.-++...+ ..++| +
T Consensus 257 KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~--lY~~ar~gd--ta~dRlkRa~~L~slk~nn 328 (531)
T COG3898 257 KL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IAL--LYVRARSGD--TALDRLKRAKKLESLKPNN 328 (531)
T ss_pred hc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHH--HHHHhcCCC--cHHHHHHHHHHHHhcCccc
Confidence 43 5554432 2345678999999999999999998744443 332 223344444 44444444332 12344 4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCC
Q 011081 387 GSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCE-EGKMEEALKVQAEMVGKGFEPS 457 (494)
Q Consensus 387 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~ 457 (494)
......+..+-...|++..|..--+... ...|....|..|.+.-.- .|+-.++...+.+.++..-.|+
T Consensus 329 aes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 329 AESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred hHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 4556666777778888888776655322 335888889888877554 4999999999999987654543
No 271
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.74 E-value=8 Score=39.35 Aligned_cols=182 Identities=16% Similarity=0.103 Sum_probs=110.4
Q ss_pred HhHHHHHHHHHHHcCCCcCHhHHHHHH----HH-HHhcCCHHHHHHHHHHHHh-------CCCCCCHhHHHHHHHHHHcc
Q 011081 263 FEKVEDVWVEMARLGCEPDCYSYSVLM----AV-FCEERRMREAEKLWEEMRD-------KNVEHDVVAYNTIIGGFCEI 330 (494)
Q Consensus 263 ~~~a~~~~~~m~~~g~~p~~~~~~~li----~~-~~~~g~~~~a~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~ 330 (494)
...|.++++...+.| +...-..+. .+ +....+.+.|..+|+.+.+ .| .....+-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 567888888888877 333322222 22 4466889999999998876 55 455677788888775
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH--hcCC
Q 011081 331 G-----EMARAEEFFREMGLSGVESSSVTFEHLVNGYCR-AGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELC--DKRR 402 (494)
Q Consensus 331 g-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~--~~~~ 402 (494)
. +.+.|+.+|.+....| .|+...+-..+..... ..+...|.++|....+.|.. +...+..++.... -..+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERN 379 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCC
Confidence 4 5677999999888887 5665554443333333 24577899999999888842 2222222221111 2346
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011081 403 VFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFE 455 (494)
Q Consensus 403 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 455 (494)
...|..++.+.... | .|....-...+..+.. ++.+.+.-.+..+.+.|..
T Consensus 380 ~~~A~~~~k~aA~~-g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 380 LELAFAYYKKAAEK-G-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHHHHHHHc-c-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 77788887744433 3 2322222223333444 6777777777777666543
No 272
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.29 E-value=13 Score=37.87 Aligned_cols=154 Identities=15% Similarity=0.092 Sum_probs=94.6
Q ss_pred HHhcCCHhHHHHHHHHHHH-------cCCCcCHhHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCHhHHHHHH
Q 011081 257 FYREGAFEKVEDVWVEMAR-------LGCEPDCYSYSVLMAVFCEER-----RMREAEKLWEEMRDKNVEHDVVAYNTII 324 (494)
Q Consensus 257 ~~~~g~~~~a~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~~~~~~~~~li 324 (494)
+....+++.|+.+|..+.+ .| +......+..+|.+.. +.+.|..+|...-+.| .|+....-..+
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~ 334 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVL 334 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHH
Confidence 4455689999999998877 45 3446677778887743 6778999999988887 34444433333
Q ss_pred HHHHc-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 011081 325 GGFCE-IGEMARAEEFFREMGLSGVESSSVTFEHLVNGYC--RAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKR 401 (494)
Q Consensus 325 ~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 401 (494)
..... ..+...|.++|......|. +...-+.+++.... ...+.+.|..+++...+.| .|-..--...+..+.. +
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~ 411 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-G 411 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-c
Confidence 22222 2467899999999998883 33333333322222 3346888999999998888 3332222233333333 5
Q ss_pred CHHHHHHHHHHHHHhCC
Q 011081 402 RVFEALDILKARVVKFG 418 (494)
Q Consensus 402 ~~~~a~~~~~~~~~~~~ 418 (494)
..+.+.-.+. .+...|
T Consensus 412 ~~~~~~~~~~-~~a~~g 427 (552)
T KOG1550|consen 412 RYDTALALYL-YLAELG 427 (552)
T ss_pred cccHHHHHHH-HHHHhh
Confidence 5555555544 344433
No 273
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.24 E-value=7.7 Score=34.27 Aligned_cols=185 Identities=10% Similarity=0.052 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC--CCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHH
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLG--CEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTII 324 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 324 (494)
...|+. +..-.+.|++++|.+.|+.+...- -+-...+--.++-++.+.++++.|....++..+.-......-|-..|
T Consensus 35 ~~LY~~-g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNE-GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 344444 344567899999999999998652 12234456667778889999999999999887753333344565666
Q ss_pred HHHHcc-------CCHHH---HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 011081 325 GGFCEI-------GEMAR---AEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLI 394 (494)
Q Consensus 325 ~~~~~~-------g~~~~---A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 394 (494)
.+++.- .|... |..-|+++..+ -||+ .-...|......+... + ..-=..+.
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS-------------~Ya~dA~~~i~~~~d~-L---A~~Em~Ia 174 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNS-------------RYAPDAKARIVKLNDA-L---AGHEMAIA 174 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCC-------------cchhhHHHHHHHHHHH-H---HHHHHHHH
Confidence 665522 12222 33333333332 2221 1111111111111100 0 00001233
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 395 GELCDKRRVFEALDILKARVVKFGLFP-TEKSYMFLIKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 395 ~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (494)
..|.+.|.+..|..-++++++...-.+ ....+-.+..+|...|-.++|.+.-.-+..
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 456666666666666665444422111 122344555667777777777666555543
No 274
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.04 E-value=0.34 Score=28.21 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=11.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHH
Q 011081 320 YNTIIGGFCEIGEMARAEEFFRE 342 (494)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~ 342 (494)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555
No 275
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.92 E-value=13 Score=36.24 Aligned_cols=57 Identities=16% Similarity=0.257 Sum_probs=32.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011081 288 LMAVFCEERRMREAEKLWEEMRDKNVE-HDVVAYNTIIGGFCEIGEMARAEEFFREMG 344 (494)
Q Consensus 288 li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 344 (494)
|...+.+.|+.++|.+.+.+|.+.... .+..+...|+.++...+.+.++..++.+..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 444445566666666666666543211 133355566666666666666666666654
No 276
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.41 E-value=3.8 Score=34.44 Aligned_cols=61 Identities=16% Similarity=0.244 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011081 284 SYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD--VVAYNTIIGGFCEIGEMARAEEFFREMG 344 (494)
Q Consensus 284 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 344 (494)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|....-.+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455555666666666666666666655432222 2334555555555666666655555543
No 277
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.40 E-value=11 Score=34.41 Aligned_cols=223 Identities=14% Similarity=0.132 Sum_probs=125.1
Q ss_pred HhcCCHhHHHHHHHHHHHcC--CCcCHh------HHHHHHHHHHhcC-CHHHHHHHHHHHHhC--------CCCCC----
Q 011081 258 YREGAFEKVEDVWVEMARLG--CEPDCY------SYSVLMAVFCEER-RMREAEKLWEEMRDK--------NVEHD---- 316 (494)
Q Consensus 258 ~~~g~~~~a~~~~~~m~~~g--~~p~~~------~~~~li~~~~~~g-~~~~a~~~~~~m~~~--------g~~~~---- 316 (494)
.+.|+.+.|..++.+....- ..|+.. .|+.-.. ..+.+ +++.|..++++..+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46799999999999886643 233322 2333333 33455 888888888765432 12233
Q ss_pred -HhHHHHHHHHHHccCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 011081 317 -VVAYNTIIGGFCEIGEMA---RAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEV 392 (494)
Q Consensus 317 -~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 392 (494)
..++..++.+|...+..+ +|..+++.+.... +-....+..-+..+.+.++.+++.+++.+|+..- .-....+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence 246778889998888754 5666777775542 2224455555666777899999999999999863 213344444
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHHHhCCCCCCHH-HHH-HHH---HHHHhcCC------HHHHHHHHHHHHhC-CCCCC
Q 011081 393 LIGEL---CDKRRVFEALDILKARVVKFGLFPTEK-SYM-FLI---KGLCEEGK------MEEALKVQAEMVGK-GFEPS 457 (494)
Q Consensus 393 li~~~---~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~-~li---~~~~~~g~------~~~A~~~~~~m~~~-~~~p~ 457 (494)
++..+ ..... ..+...+...+.. .+.|... ... .++ ....+.++ ++...++++...+. +.+.+
T Consensus 161 ~l~~i~~l~~~~~-~~a~~~ld~~l~~-r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls 238 (278)
T PF08631_consen 161 ILHHIKQLAEKSP-ELAAFCLDYLLLN-RFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLS 238 (278)
T ss_pred HHHHHHHHHhhCc-HHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCC
Confidence 44444 44333 4455555544443 2333332 111 111 11222222 44555555543332 22334
Q ss_pred HHHHHHH-------HHHHHhcCCHHHHHHHHHHHH
Q 011081 458 LEIYSAF-------IDGYMKEGNVEMATMLRKEMF 485 (494)
Q Consensus 458 ~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~ 485 (494)
..+-.++ ...+.+.++++.|.+.|+-..
T Consensus 239 ~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 239 AEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 3332222 234567899999999998543
No 278
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.35 E-value=4.2 Score=34.17 Aligned_cols=99 Identities=11% Similarity=0.029 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHH-
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPD--CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNT- 322 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~- 322 (494)
-...+..+...|++.|+.++|++.|.++.+....+. ...+-.+|......+++..+.....+....--.........
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 346788999999999999999999999988754443 34567788888999999999988877654311111111111
Q ss_pred --HHH--HHHccCCHHHHHHHHHHHH
Q 011081 323 --IIG--GFCEIGEMARAEEFFREMG 344 (494)
Q Consensus 323 --li~--~~~~~g~~~~A~~~~~~m~ 344 (494)
... .+...+++.+|-+.|-+..
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccC
Confidence 111 1223567777777766553
No 279
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.33 E-value=0.22 Score=28.62 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHhcCCHhHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVE 267 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~ 267 (494)
|..+|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 8999999999999999999986
No 280
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.89 E-value=4.1 Score=36.96 Aligned_cols=98 Identities=12% Similarity=0.138 Sum_probs=54.2
Q ss_pred cCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCC--HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 011081 280 PDCYSYSVLMAVFCEERRMREAEKLWEEMRDKN---VEHD--VVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVT 354 (494)
Q Consensus 280 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 354 (494)
....+...++..-....+++.+...+-.++..- ..++ ..+|-.++. .-++++++.++..=.+-|+-||-.+
T Consensus 62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccchhh
Confidence 334444455554555566666666665554421 1111 222222222 2255566666666666677777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011081 355 FEHLVNGYCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 355 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 381 (494)
++.+|+.+.+.+++.+|.++.-.|...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 777777777777777766666655543
No 281
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=90.77 E-value=10 Score=32.69 Aligned_cols=202 Identities=15% Similarity=0.074 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-CCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARL-GCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
...+......+...+++..+...+...... ........+......+...+++..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 455666667777777777777777666542 223344556666666667777777777777776643222 122222233
Q ss_pred -HHHccCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 011081 326 -GFCEIGEMARAEEFFREMGLSGV--ESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRR 402 (494)
Q Consensus 326 -~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 402 (494)
.+...|+++.|...|.+...... ......+......+...++.+.+...+..............+..+...+...+.
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 67778888888888887754221 122333444444466777888888888887765321135566677777777778
Q ss_pred HHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 403 VFEALDILKARVVKFGLFPT-EKSYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 403 ~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
.+.+...+....... |+ ...+..+...+...|..+.+...+.+..+.
T Consensus 218 ~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELD---PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhC---cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888877555432 32 333444444444666788888888877754
No 282
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.35 E-value=15 Score=34.16 Aligned_cols=130 Identities=13% Similarity=0.128 Sum_probs=83.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-----cCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHhHH
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARLGCE-----PDCYSYSVLMAVFCEERRMREAEKLWEEMRD----KNVEHDVVAY 320 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~~~~~~ 320 (494)
.-+|..++.-.+.++++++.|+...+-.-. ....+|..|-..|.+..++++|.-+.....+ .++..=..-|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 344667777778899999998877553111 1234688899999999999998866554432 2322111122
Q ss_pred H-----HHHHHHHccCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 321 N-----TIIGGFCEIGEMARAEEFFREMGL----SGVES-SSVTFEHLVNGYCRAGDVDSAILVYNDMC 379 (494)
Q Consensus 321 ~-----~li~~~~~~g~~~~A~~~~~~m~~----~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 379 (494)
. .|.-++-..|+...|.+.-++..+ .|-.+ -......+.+.|...|+.|.|+.-|++..
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2 344566778888888887776543 23222 22344567778889999998888777643
No 283
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.29 E-value=0.91 Score=25.75 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 459 EIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 459 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
.+|..+..+|...|++++|+..+++.++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 3456666666667777777777776666444
No 284
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.13 E-value=1.3 Score=40.03 Aligned_cols=104 Identities=19% Similarity=0.296 Sum_probs=66.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC
Q 011081 346 SGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG---FEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPT 422 (494)
Q Consensus 346 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 422 (494)
.|.+.+..+...++..-....+++.+...+-.+...- ..|+.. -...++. +-.-+.++++.++.. -..+|+.||
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irl-llky~pq~~i~~l~n-pIqYGiF~d 134 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRL-LLKYDPQKAIYTLVN-PIQYGIFPD 134 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHH-HHccChHHHHHHHhC-cchhccccc
Confidence 3545566666666666666677777777777765431 122221 1222222 334456677777663 446788888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 423 EKSYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
..+++.+|+.+.+.+++.+|.++.-.|..+
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888888888888887777655
No 285
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.94 E-value=15 Score=33.29 Aligned_cols=61 Identities=11% Similarity=0.114 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011081 419 LFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK-GFEPSLEIYSAFIDGYMKEGNVEMATM 479 (494)
Q Consensus 419 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~ 479 (494)
-.++..+...++..++..+++.+-.++++..... +..-|...|..+|......|+..-..+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~k 259 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRK 259 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHH
Confidence 3445555555555566666666555555555443 333455556666665555555443333
No 286
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.88 E-value=11 Score=33.85 Aligned_cols=58 Identities=14% Similarity=0.079 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEM 308 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 308 (494)
++.....|.++|.+.+|.++.+..+... +.+...+-.|+..++..|+--.|.+-++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4455566666677777777766666655 556666666777777777655555555554
No 287
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.60 E-value=1.1 Score=25.20 Aligned_cols=30 Identities=20% Similarity=0.172 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 460 IYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 460 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
.|..+...+...|++++|++.+++.++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 455566666677777777777777666444
No 288
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.41 E-value=11 Score=30.91 Aligned_cols=56 Identities=20% Similarity=0.134 Sum_probs=36.2
Q ss_pred HHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 354 TFEHLVNG---YCRAGDVDSAILVYNDMCRKGFEPEG---STIEVLIGELCDKRRVFEALDILKAR 413 (494)
Q Consensus 354 ~~~~li~~---~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~~ 413 (494)
+.+.||.. -.+.++.+++..++.-+.-. .|.. .++... .+...|++.+|+.+|++.
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGW--LHIVRGDWDDALRLLREL 70 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHH--HHHHhCCHHHHHHHHHHH
Confidence 34444443 35667888888888888664 3433 333333 356789999999999853
No 289
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.06 E-value=16 Score=32.52 Aligned_cols=212 Identities=9% Similarity=0.090 Sum_probs=121.7
Q ss_pred CCCcChHhHHHHHHH-HHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHH
Q 011081 191 GLSVKVSTCNALIWE-VSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDV 269 (494)
Q Consensus 191 g~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 269 (494)
+-.||+..-|..-.. -.+..+.++|+.-|.+.++..++ .-...-.+.-.+|..+.+.|++++.++.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgE-------------KgeWGFKALKQmiKI~f~l~~~~eMm~~ 87 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGE-------------KGEWGFKALKQMIKINFRLGNYKEMMER 87 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccc-------------cchhHHHHHHHHHHHHhccccHHHHHHH
Confidence 445555443332211 12334678888888888765432 0122344566788999999999999999
Q ss_pred HHHHHHc---CC--CcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh----CC-CCCCHhHHHHHHHHHHccCCHHHHHHH
Q 011081 270 WVEMARL---GC--EPDCYSYSVLMAVFCEERRMREAEKLWEEMRD----KN-VEHDVVAYNTIIGGFCEIGEMARAEEF 339 (494)
Q Consensus 270 ~~~m~~~---g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g-~~~~~~~~~~li~~~~~~g~~~~A~~~ 339 (494)
+.+|..- .+ .-+....|++++--+...+.+.-.+.|+.-.+ .. -..=-.|-+-|...|...|++.+..++
T Consensus 88 Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KI 167 (440)
T KOG1464|consen 88 YKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKI 167 (440)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHH
Confidence 9988532 11 12344567777766666666555555543221 10 011112334567778888888888888
Q ss_pred HHHHHhCCCC----C-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHH-----HhcCC
Q 011081 340 FREMGLSGVE----S-------SSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGF-EPEGSTIEVLIGEL-----CDKRR 402 (494)
Q Consensus 340 ~~~m~~~~~~----~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~-----~~~~~ 402 (494)
++++.++.-. - =...|..=|..|....+-.+...+|++.+...- -|... .-.+|+-| .+.|+
T Consensus 168 lkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECGGKMHlreg~ 246 (440)
T KOG1464|consen 168 LKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECGGKMHLREGE 246 (440)
T ss_pred HHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcCCccccccch
Confidence 8887654211 1 124566667777777777777778877654321 23322 22333333 35577
Q ss_pred HHHHHHHHHHHHHh
Q 011081 403 VFEALDILKARVVK 416 (494)
Q Consensus 403 ~~~a~~~~~~~~~~ 416 (494)
+++|-.-|-+..+.
T Consensus 247 fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 247 FEKAHTDFFEAFKN 260 (440)
T ss_pred HHHHHhHHHHHHhc
Confidence 77765544445543
No 290
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=88.85 E-value=23 Score=34.14 Aligned_cols=209 Identities=16% Similarity=0.224 Sum_probs=125.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHH-------HHHHHHHh----cCCHHHHHHHHHHHHhCCCC
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYS-------VLMAVFCE----ERRMREAEKLWEEMRDKNVE 314 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-------~li~~~~~----~g~~~~a~~~~~~m~~~g~~ 314 (494)
-+.++..++....+.++..+|.+.+.-+.-. .|+...-. .+-+..+. .-+...=+.+|++....++.
T Consensus 297 li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD 374 (549)
T PF07079_consen 297 LIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID 374 (549)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc
Confidence 4567888888888999999998888777654 34433221 22222221 11223334555555554322
Q ss_pred CC-HhHHH-HHHHHHHccCC-HHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHHCCCC
Q 011081 315 HD-VVAYN-TIIGGFCEIGE-MARAEEFFREMGLSGVESSSVTFEHLV----NGYCR---AGDVDSAILVYNDMCRKGFE 384 (494)
Q Consensus 315 ~~-~~~~~-~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li----~~~~~---~g~~~~a~~~~~~m~~~~~~ 384 (494)
.. .+.|- --..-+.+.|. -++|+.+++...+-. +-|...-|.+. ..|.+ ...+..-+.+-+-+.+.|+.
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 11 11111 11233555565 788999999887642 33333333222 23322 23345556666666678887
Q ss_pred CChh----hHHHHHH--HHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011081 385 PEGS----TIEVLIG--ELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSL 458 (494)
Q Consensus 385 p~~~----~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 458 (494)
|-.+ .-|.+.+ .+...|++.++.-.-. .+. .+.|++.+|..+.-++....++++|..++..+ +|+.
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~-WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~ 525 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSS-WLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNE 525 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHH-HHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCch
Confidence 6433 3344433 3557899998876643 333 45799999999998899999999999999865 7888
Q ss_pred HHHHHHH
Q 011081 459 EIYSAFI 465 (494)
Q Consensus 459 ~~~~~li 465 (494)
.++++=+
T Consensus 526 ~~~dskv 532 (549)
T PF07079_consen 526 RMRDSKV 532 (549)
T ss_pred hhHHHHH
Confidence 8777544
No 291
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.57 E-value=15 Score=31.62 Aligned_cols=29 Identities=7% Similarity=0.115 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 283 YSYSVLMAVFCEERRMREAEKLWEEMRDK 311 (494)
Q Consensus 283 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 311 (494)
..||-|.--+...|+++.|.+.|+...+.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~EL 128 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLEL 128 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhcc
Confidence 34555555555556666666666655554
No 292
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.50 E-value=23 Score=33.55 Aligned_cols=66 Identities=12% Similarity=0.155 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011081 422 TEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEP---SLEIYSAFIDGYMKEGNVEMATMLRKEMFEN 487 (494)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 487 (494)
...+|..++..+.+.|.++.|...+.++.+.+... +..+.-.-.......|+.++|...+++.++.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44577888888889999999999888887643111 3344444556667778889999888888773
No 293
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.74 E-value=15 Score=30.48 Aligned_cols=32 Identities=6% Similarity=0.146 Sum_probs=15.6
Q ss_pred HHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHH
Q 011081 268 DVWVEMARLGCEPDCYSYSVLMAVFCEERRMR 299 (494)
Q Consensus 268 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 299 (494)
++++.+.+.++.|+...|..+++.+.+.|++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 33344444455555555555555555555433
No 294
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.32 E-value=41 Score=35.19 Aligned_cols=174 Identities=15% Similarity=0.235 Sum_probs=115.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHH----HHHHHhcCCHhHHHHHHHHHH
Q 011081 199 CNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNAL----MVGFYREGAFEKVEDVWVEMA 274 (494)
Q Consensus 199 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~~~a~~~~~~m~ 274 (494)
...-+..+++...++.|..+.+.- .-+..+...+ .+-+.+.|++++|...|-+-.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~---------------------~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI 395 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ---------------------HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI 395 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc---------------------CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc
Confidence 344566667777777777766554 1233333333 344557899999999887765
Q ss_pred HcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 011081 275 RLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVT 354 (494)
Q Consensus 275 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 354 (494)
.. ++| ..+|.-|.+..++..--.+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+.-. .|.. ..-
T Consensus 396 ~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd 465 (933)
T KOG2114|consen 396 GF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFD 465 (933)
T ss_pred cc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eee
Confidence 43 233 23666777777778888888999998854 66677899999999999998877776554 3321 112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011081 355 FEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILK 411 (494)
Q Consensus 355 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 411 (494)
....+..|.+.+-.++|..+-..... .......+ +...+++++|++++.
T Consensus 466 ~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~ 514 (933)
T KOG2114|consen 466 VETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYIS 514 (933)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHh
Confidence 34566777777777777776655432 22333333 456788999999887
No 295
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.94 E-value=0.8 Score=26.26 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=10.1
Q ss_pred CHhHHHHHHHHHHccCCHHHH
Q 011081 316 DVVAYNTIIGGFCEIGEMARA 336 (494)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~A 336 (494)
|..+|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444444444444444444444
No 296
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.74 E-value=42 Score=34.75 Aligned_cols=44 Identities=9% Similarity=0.122 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcC
Q 011081 162 DLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRG 209 (494)
Q Consensus 162 ~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 209 (494)
=.+|--|.|.|+ +++|.++.....+ ........+-..+..|...
T Consensus 115 Wa~Iyy~LR~G~---~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 115 WALIYYCLRCGD---YDEALEVANENRN-QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHTTT----HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHHhcCC---HHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhC
Confidence 356667888888 8999888844443 2333445556667777654
No 297
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.12 E-value=26 Score=31.72 Aligned_cols=162 Identities=9% Similarity=0.086 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHH-------hcC-Ccccccccccc---ccccccccc
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREV-------FGL-DSDATAGIGKD---VKRVVRVRP 245 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-------~~~-~~~~~~~~~~~---~~~~~~~~p 245 (494)
-..|.++|.-++...-+ ..+-+-++.++-...+..+|...+... +.. +.. ....+.+ .-...++.-
T Consensus 149 s~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~n-e~vts~d~~Ykld~~~~k~ 225 (361)
T COG3947 149 SRKALELFAYLVEHKGK--EVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNAN-EAVTSQDRKYKLDAGLPKY 225 (361)
T ss_pred hhHHHHHHHHHHHhcCC--cccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccC-ceEEEcCCceEEecCCccc
Confidence 35789999888875322 344456677777777777776655432 221 000 0000000 011123555
Q ss_pred CHHHHHHHHHHHHhc-CCHhHHHHHHHHHHHcCCCcCH-------------h----HHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 246 NVHTFNALMVGFYRE-GAFEKVEDVWVEMARLGCEPDC-------------Y----SYSVLMAVFCEERRMREAEKLWEE 307 (494)
Q Consensus 246 ~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~-------------~----~~~~li~~~~~~g~~~~a~~~~~~ 307 (494)
|+.-|-..+...-+. -.++++.++....+.. .-|+. . +++.....|..+|.+.+|.++.+.
T Consensus 226 Dv~e~es~~rqi~~inltide~kelv~~ykgd-yl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr 304 (361)
T COG3947 226 DVQEYESLARQIEAINLTIDELKELVGQYKGD-YLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQR 304 (361)
T ss_pred cHHHHHHHhhhhhccccCHHHHHHHHHHhcCC-cCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 777676666544332 2355555555544321 11111 0 112233344555555555555555
Q ss_pred HHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 011081 308 MRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREM 343 (494)
Q Consensus 308 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 343 (494)
.+... +.+...|-.++..+...|+--.|.+-++++
T Consensus 305 ~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 305 ALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 55443 344455555555555555544444444443
No 298
>PRK09687 putative lyase; Provisional
Probab=85.78 E-value=28 Score=31.82 Aligned_cols=221 Identities=11% Similarity=0.068 Sum_probs=130.5
Q ss_pred cCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCCHhHH
Q 011081 245 PNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRM----REAEKLWEEMRDKNVEHDVVAY 320 (494)
Q Consensus 245 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~g~~~~~~~~ 320 (494)
+|.......+.++...|. +++...+..+.. .+|...-...+.+++..|+. +++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 355566666667776664 344444445543 34556666667777777763 4567777666443 4566666
Q ss_pred HHHHHHHHccCCH-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 011081 321 NTIIGGFCEIGEM-----ARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIG 395 (494)
Q Consensus 321 ~~li~~~~~~g~~-----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 395 (494)
...+.++...+.. ..+...+..... .++..+-...+.++.+.++ +++...+-.+.+. +|..+-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 6666666554421 233444433332 3355555666777777776 4566766666653 34445555555
Q ss_pred HHHhcC-CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 011081 396 ELCDKR-RVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNV 474 (494)
Q Consensus 396 ~~~~~~-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 474 (494)
++.+.+ ....+...+...+.+ ++..+-...+.++.+.|+ ..|...+-...+.+ + .....+.++...|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~D----~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQD----KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhcC----CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 555543 234566655545533 566667778888888887 45565555555432 2 234677888888884
Q ss_pred HHHHHHHHHHHHccc
Q 011081 475 EMATMLRKEMFENQV 489 (494)
Q Consensus 475 ~~a~~~~~~m~~~~~ 489 (494)
+|...+.++.+...
T Consensus 252 -~a~p~L~~l~~~~~ 265 (280)
T PRK09687 252 -TLLPVLDTLLYKFD 265 (280)
T ss_pred -hHHHHHHHHHhhCC
Confidence 68888888776443
No 299
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.70 E-value=2.2 Score=25.37 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011081 248 HTFNALMVGFYREGAFEKVEDVWVEMA 274 (494)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (494)
.+++.|...|...|++++|+.++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345555566666666666666665554
No 300
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.11 E-value=11 Score=32.13 Aligned_cols=20 Identities=5% Similarity=-0.022 Sum_probs=8.2
Q ss_pred ChhhHHHHHHHHHhcCCHHH
Q 011081 386 EGSTIEVLIGELCDKRRVFE 405 (494)
Q Consensus 386 ~~~~~~~li~~~~~~~~~~~ 405 (494)
|...+.+|+..+.+.|+++.
T Consensus 177 n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred CHHHHHHHHHHHHHhcchhh
Confidence 33344444444444444433
No 301
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.41 E-value=2.9 Score=24.81 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 459 EIYSAFIDGYMKEGNVEMATMLRKEMFE 486 (494)
Q Consensus 459 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 486 (494)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3555666666666666666666666554
No 302
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.37 E-value=8.5 Score=28.24 Aligned_cols=61 Identities=11% Similarity=0.077 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 264 EKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 264 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
=++.+-++.+....+.|+.....+.+++|.+.+++..|.++++..+.+. ..+...|..+++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 3556666666667777888888888888888888888888887766431 113334554443
No 303
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.33 E-value=3.4 Score=23.29 Aligned_cols=27 Identities=11% Similarity=0.351 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 011081 249 TFNALMVGFYREGAFEKVEDVWVEMAR 275 (494)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (494)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555555555555555555555544
No 304
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.19 E-value=10 Score=32.21 Aligned_cols=72 Identities=6% Similarity=0.040 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHhHHHHHHHHHHccCCHHHH
Q 011081 264 EKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK---NVEHDVVAYNTIIGGFCEIGEMARA 336 (494)
Q Consensus 264 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~A 336 (494)
++|.+.|-++...+.--++.....|...|. ..+.+++..++....+. +-.+|+..+.+|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 345555555555553333333333333333 44555555555554432 2244555556666666655555554
No 305
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.06 E-value=9.2 Score=32.91 Aligned_cols=78 Identities=8% Similarity=0.011 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccc
Q 011081 161 FDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRV 240 (494)
Q Consensus 161 ~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (494)
.+..++.+.+.+. +.+++...+.-++.... |.-.-..++..||-.|++++|..-++-.-...+.
T Consensus 4 l~~t~seLL~~~s---L~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~------------ 67 (273)
T COG4455 4 LRDTISELLDDNS---LQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ------------ 67 (273)
T ss_pred hHHHHHHHHHhcc---HHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc------------
Confidence 3445566666777 99999998888876543 6677788999999999999999888777554443
Q ss_pred cccccCHHHHHHHHHH
Q 011081 241 VRVRPNVHTFNALMVG 256 (494)
Q Consensus 241 ~~~~p~~~~~~~li~~ 256 (494)
..+-..+|..+|.+
T Consensus 68 --~t~~a~lyr~lir~ 81 (273)
T COG4455 68 --DTVGASLYRHLIRC 81 (273)
T ss_pred --cchHHHHHHHHHHH
Confidence 34566777777765
No 306
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.81 E-value=22 Score=29.05 Aligned_cols=54 Identities=15% Similarity=0.136 Sum_probs=29.7
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCcCHhHHH-HHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 256 GFYREGAFEKVEDVWVEMARLGCEPDCYSYS-VLMAVFCEERRMREAEKLWEEMRDK 311 (494)
Q Consensus 256 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~ 311 (494)
.-.+.++.+++..++..+.-. .|...... .-...+.+.|++++|.++|+++.+.
T Consensus 19 ~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 334556677777777666544 33332221 1122355667777777777776554
No 307
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.77 E-value=29 Score=30.34 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHhC--CCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011081 331 GEMARAEEFFREMGLS--GVESSSVT---FEHLVNGYCRAGDVDSAILVYNDMCRKGFEP 385 (494)
Q Consensus 331 g~~~~A~~~~~~m~~~--~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 385 (494)
.++++|+..|++.-+- |-..+... +.-....-+..+++.+|+.+|+++....+..
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4555666666554331 21222222 2222333456788999999999987765443
No 308
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.27 E-value=0.31 Score=39.37 Aligned_cols=82 Identities=13% Similarity=0.230 Sum_probs=37.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 011081 289 MAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDV 368 (494)
Q Consensus 289 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 368 (494)
|..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++... ..-...++..|.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcchH
Confidence 34444445555555555555544434445555555555555555455554444110 01223344444555555
Q ss_pred HHHHHHHHH
Q 011081 369 DSAILVYND 377 (494)
Q Consensus 369 ~~a~~~~~~ 377 (494)
++|..++..
T Consensus 87 ~~a~~Ly~~ 95 (143)
T PF00637_consen 87 EEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 555554444
No 309
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.85 E-value=3.7 Score=23.07 Aligned_cols=30 Identities=20% Similarity=0.127 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 460 IYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 460 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
+|..+...|...|++++|.+.|++.++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 566667777778888888888887777554
No 310
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.81 E-value=23 Score=28.51 Aligned_cols=51 Identities=8% Similarity=0.037 Sum_probs=23.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011081 330 IGEMARAEEFFREMGLSGVESSSVTF-EHLVNGYCRAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 330 ~g~~~~A~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~ 382 (494)
.++++++..+++.|.-. .|+..-. ..-.-.+...|++++|..+|+++.+.+
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 45555555555555432 2222111 111122345566666666666655543
No 311
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.51 E-value=13 Score=27.37 Aligned_cols=42 Identities=19% Similarity=0.134 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011081 370 SAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILK 411 (494)
Q Consensus 370 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 411 (494)
++.+-++.+...++.|+.....+.+.+|-+.+++..|.++|+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE 66 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILE 66 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 334444444444444555555555555555555555555544
No 312
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=82.14 E-value=0.49 Score=38.19 Aligned_cols=85 Identities=7% Similarity=0.087 Sum_probs=59.0
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC
Q 011081 252 ALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIG 331 (494)
Q Consensus 252 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 331 (494)
.+|..+.+.+.+.....+++.+...+..-+....+.++..|++.++.++..++++.. +..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 346677778889999999999987765667888899999999998877877776621 1133345666666667
Q ss_pred CHHHHHHHHHHH
Q 011081 332 EMARAEEFFREM 343 (494)
Q Consensus 332 ~~~~A~~~~~~m 343 (494)
.+++|.-++.++
T Consensus 85 l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 85 LYEEAVYLYSKL 96 (143)
T ss_dssp SHHHHHHHHHCC
T ss_pred hHHHHHHHHHHc
Confidence 666666655543
No 313
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=81.60 E-value=19 Score=34.92 Aligned_cols=120 Identities=12% Similarity=0.113 Sum_probs=56.0
Q ss_pred HHccCCHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 011081 327 FCEIGEMARAEE-FFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFE 405 (494)
Q Consensus 327 ~~~~g~~~~A~~-~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 405 (494)
-...|++-.|-+ ++..+....-.|+.+...+.| +...|+++.+.+.+....+. +.....+..+++....+.|++++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 334555544433 333333332234443333332 34556666666666554332 22344455566666666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 406 ALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 406 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (494)
|...-. +|....++ +........-.--..|-++++.-.|++...
T Consensus 376 a~s~a~-~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 376 ALSTAE-MMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHH-HHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 666654 33332222 222222222222334556666666666653
No 314
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.48 E-value=29 Score=28.78 Aligned_cols=134 Identities=11% Similarity=0.081 Sum_probs=84.2
Q ss_pred hhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChH-hHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccc
Q 011081 158 PFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVS-TCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKD 236 (494)
Q Consensus 158 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 236 (494)
...|...++.... +. .++|+..|..+.+.|..--+. ............|+...|...|+++-...+
T Consensus 59 gd~flaAL~lA~~-~k---~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~--------- 125 (221)
T COG4649 59 GDAFLAALKLAQE-NK---TDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS--------- 125 (221)
T ss_pred hHHHHHHHHHHHc-CC---chHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC---------
Confidence 4556666654433 44 789999999998877653222 222333456778888899999988855332
Q ss_pred cccccccccCHH-HHHHH--HHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 237 VKRVVRVRPNVH-TFNAL--MVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK 311 (494)
Q Consensus 237 ~~~~~~~~p~~~-~~~~l--i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 311 (494)
.|-.. -...| .-.+...|.++......+.+-..+-+.-...-..|.-+-.+.|++.+|.++|..+...
T Consensus 126 -------~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 126 -------IPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred -------CcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 12111 11111 1234567788888877777765554444455567777777888888888888887654
No 315
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.40 E-value=10 Score=32.59 Aligned_cols=76 Identities=8% Similarity=0.098 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHhHHHHHHHH
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKN--VEHDVVAYNTIIGG 326 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~ 326 (494)
.+.-++.+.+.+.+.+++...++-.+.. +.|..+-..+++.+|-.|++++|..-++..-+.. ..+....|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4555677788889999999888877764 5566777889999999999999988777765442 23345566666654
No 316
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.39 E-value=5.1 Score=22.38 Aligned_cols=27 Identities=15% Similarity=0.351 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 011081 249 TFNALMVGFYREGAFEKVEDVWVEMAR 275 (494)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (494)
.|..+...+.+.|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455555555555555555555544
No 317
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=81.08 E-value=4.3 Score=37.21 Aligned_cols=94 Identities=18% Similarity=0.089 Sum_probs=59.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011081 359 VNGYCRAGDVDSAILVYNDMCRKGFEP-EGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEG 437 (494)
Q Consensus 359 i~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 437 (494)
..-|.+.|.+++|+..|...+.. .| +.+++..-..+|.+...+..|..-....+.-.. .-...|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~--~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK--LYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH--HHHHHHHHHHHHHHHHh
Confidence 36788999999999999887654 45 888888888899998888877665543322100 01123333333333445
Q ss_pred CHHHHHHHHHHHHhCCCCCCH
Q 011081 438 KMEEALKVQAEMVGKGFEPSL 458 (494)
Q Consensus 438 ~~~~A~~~~~~m~~~~~~p~~ 458 (494)
...+|.+=++..++ +.|+.
T Consensus 180 ~~~EAKkD~E~vL~--LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA--LEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHh--hCccc
Confidence 56666666666653 46663
No 318
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=80.99 E-value=22 Score=31.92 Aligned_cols=89 Identities=8% Similarity=0.087 Sum_probs=64.0
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc--
Q 011081 252 ALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCE-- 329 (494)
Q Consensus 252 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-- 329 (494)
.=|.++++.++|.+++...-+--+.--+--......-|-.|.|.+.+..+.++-..-.+.--.-+...|.+++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 447889999999999887766554422333445666777899999999998888777664223344558887777654
Q ss_pred ---cCCHHHHHHHH
Q 011081 330 ---IGEMARAEEFF 340 (494)
Q Consensus 330 ---~g~~~~A~~~~ 340 (494)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 59999998877
No 319
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.97 E-value=3.1 Score=23.08 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=15.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 464 FIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 464 li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
+..++.+.|++++|.+.|+++++.-|
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 44455556666666666666665443
No 320
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.90 E-value=5.7 Score=27.86 Aligned_cols=47 Identities=21% Similarity=0.172 Sum_probs=20.6
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHH
Q 011081 399 DKRRVFEALDILKARVVKFGLFPTEK-SYMFLIKGLCEEGKMEEALKV 445 (494)
Q Consensus 399 ~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~ 445 (494)
..++-++|+..|...+.+..-.++.. ++..++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555544444332222221 344455555555555544443
No 321
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.53 E-value=21 Score=26.55 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 265 KVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 265 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
+..+-++.+....+.|+.....+.+.+|.+.+++..|.++++.++.+- .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 456666666677778888888888888888888888888888776541 122225555543
No 322
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=80.49 E-value=1.3e+02 Score=35.76 Aligned_cols=64 Identities=13% Similarity=0.086 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 423 EKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
..+|....+..-+.|.++.|...+-...+.+ .| ..+-....-....|+...|+.++++.++.+.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 4567777887778999999988877776654 33 3444555667888999999999999886554
No 323
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=80.42 E-value=11 Score=34.68 Aligned_cols=54 Identities=13% Similarity=0.211 Sum_probs=32.6
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCc-CHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 254 MVGFYREGAFEKVEDVWVEMARLGCEP-DCYSYSVLMAVFCEERRMREAEKLWEEMR 309 (494)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 309 (494)
.+-|.+.|.+++|++.|..-... .| |.+++..-..+|.+.+.+..|+.=....+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 35566667777777776655543 33 66666666666766666665555444443
No 324
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=80.21 E-value=22 Score=30.27 Aligned_cols=89 Identities=11% Similarity=0.135 Sum_probs=41.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC----CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011081 292 FCEERRMREAEKLWEEMRDKNVEH----DVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGD 367 (494)
Q Consensus 292 ~~~~g~~~~a~~~~~~m~~~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 367 (494)
+.+.|++++|..-|.+.+..-... -.+.|..-..++.+.+.++.|++-.....+.+ +.......--..+|.+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhh
Confidence 344555555555555555431111 11223333444555555555555555554443 1111222222335555566
Q ss_pred HHHHHHHHHHHHHC
Q 011081 368 VDSAILVYNDMCRK 381 (494)
Q Consensus 368 ~~~a~~~~~~m~~~ 381 (494)
+++|+.-|+.+.+.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666554
No 325
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.49 E-value=38 Score=28.19 Aligned_cols=136 Identities=10% Similarity=0.095 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-HHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCY-SYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVV-AYNTI 323 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~l 323 (494)
....|..-++ ..+.+..++|+.-|.++.+.|...=.+ .-.-........|+...|...|+++-...-.|... -..-|
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3444555444 345566777777777777665331111 11112223455677777777777776553333322 11111
Q ss_pred --HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011081 324 --IGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 324 --i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 382 (494)
.-.+...|.+++...-.+.+...+.+.-...-.+|.-+-.+.|++.+|.+.|..+....
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 12234566666666666666554433334444555555666677777777777665543
No 326
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=77.63 E-value=31 Score=29.41 Aligned_cols=94 Identities=19% Similarity=0.151 Sum_probs=63.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHH
Q 011081 360 NGYCRAGDVDSAILVYNDMCRKGFEPE-----GSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTE-KSYMFLIKGL 433 (494)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~ 433 (494)
.-+.+.|++++|..-|.+.+..- ++. ...|..-..++.+.+.++.|++-..+.+.- .|+. .....-..+|
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel---~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL---NPTYEKALERRAEAY 178 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc---CchhHHHHHHHHHHH
Confidence 45778899999999999998762 222 233444456677888888888776544432 2432 1222334578
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHH
Q 011081 434 CEEGKMEEALKVQAEMVGKGFEPSLE 459 (494)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~~~~p~~~ 459 (494)
.+...+++|++=|.++++. .|...
T Consensus 179 ek~ek~eealeDyKki~E~--dPs~~ 202 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILES--DPSRR 202 (271)
T ss_pred HhhhhHHHHHHHHHHHHHh--CcchH
Confidence 8888999999999999865 55544
No 327
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=77.56 E-value=1e+02 Score=32.71 Aligned_cols=227 Identities=11% Similarity=0.040 Sum_probs=123.7
Q ss_pred hcCChhcHHHHHHHHHHHHhCCCCcCh-------HhHHHHHHH-HHcCCChhHHHHHHHHHhcCCccccccccccccccc
Q 011081 170 EVKNIEKIETCVDIVRMLMSRGLSVKV-------STCNALIWE-VSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVV 241 (494)
Q Consensus 170 ~~~~~~~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (494)
...+ +.+|..+..++...-..|+. ..+++|-.. ....|+.+.|.++.+.....-+. .
T Consensus 427 s~~r---~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~------------~ 491 (894)
T COG2909 427 SQHR---LAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE------------A 491 (894)
T ss_pred HccC---hHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc------------c
Confidence 4455 88888888877654323222 234443322 23467889999988887654332 1
Q ss_pred ccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHH-----HHHhcCC--HHHHHHHHHHHHhCC--
Q 011081 242 RVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMA-----VFCEERR--MREAEKLWEEMRDKN-- 312 (494)
Q Consensus 242 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~-----~~~~~g~--~~~a~~~~~~m~~~g-- 312 (494)
...+.++.+..+..+..-.|++++|..+..+..+..-.-+...+..... .+-..|+ +.+.+..|.......
T Consensus 492 ~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~ 571 (894)
T COG2909 492 AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLE 571 (894)
T ss_pred cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 1345677788888899999999999999888766533444444433322 2444563 233333344332210
Q ss_pred -C---CCCHhHHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011081 313 -V---EHDVVAYNTIIGGFCEI-GEMARAEEFFREMGLSGVESSSVT--FEHLVNGYCRAGDVDSAILVYNDMCRKGFEP 385 (494)
Q Consensus 313 -~---~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 385 (494)
. .+-.-++..+..++.+. +...++..-++........|-... +..|+..+...|+.++|...++++......+
T Consensus 572 q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 572 QKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred hcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 0 12234555566666551 112222222222222221222222 2367788889999999999999887643222
Q ss_pred ----ChhhHHHHH--HHHHhcCCHHHHHHHHH
Q 011081 386 ----EGSTIEVLI--GELCDKRRVFEALDILK 411 (494)
Q Consensus 386 ----~~~~~~~li--~~~~~~~~~~~a~~~~~ 411 (494)
+..+-...+ ......|+.+++.....
T Consensus 652 ~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~ 683 (894)
T COG2909 652 QYHVDYLAAAYKVKLILWLAQGDKELAAEWLL 683 (894)
T ss_pred CCCchHHHHHHHhhHHHhcccCCHHHHHHHHH
Confidence 222222222 22345677777766554
No 328
>PHA02875 ankyrin repeat protein; Provisional
Probab=76.98 E-value=37 Score=33.08 Aligned_cols=77 Identities=13% Similarity=0.136 Sum_probs=34.3
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCcCHhH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh--HHHHHHHHHHccCC
Q 011081 257 FYREGAFEKVEDVWVEMARLGCEPDCYS--YSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVV--AYNTIIGGFCEIGE 332 (494)
Q Consensus 257 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~ 332 (494)
.++.|+.+-+. .+.+.|..|+... ..+.+...+..|+.+-+ +.+.+.|..|+.. .....+...+..|+
T Consensus 9 A~~~g~~~iv~----~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDIAR----RLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHHHH----HHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 34455554433 3334555554322 23344455566665433 3344445444322 11223344455666
Q ss_pred HHHHHHHHH
Q 011081 333 MARAEEFFR 341 (494)
Q Consensus 333 ~~~A~~~~~ 341 (494)
.+.+..+++
T Consensus 81 ~~~v~~Ll~ 89 (413)
T PHA02875 81 VKAVEELLD 89 (413)
T ss_pred HHHHHHHHH
Confidence 665544443
No 329
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.95 E-value=6.3 Score=22.07 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=13.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMG 344 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~ 344 (494)
+|..+...|.+.|++++|.+.|++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555555555555544
No 330
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.66 E-value=46 Score=28.27 Aligned_cols=87 Identities=13% Similarity=0.093 Sum_probs=37.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH-----HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011081 360 NGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEV-----LIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLC 434 (494)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-----li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 434 (494)
..+...+++++|..-++..+.. |....+.. |.......|.+++|+..++. ....+. .......-.+.+.
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t-~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDT-IKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc-cccccH--HHHHHHHhhhHHH
Confidence 3455556666666666655432 11222222 22344455555555555541 111110 1111122234455
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 011081 435 EEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~ 452 (494)
..|+-++|+.-|.+.+..
T Consensus 171 ~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 171 AKGDKQEARAAYEKALES 188 (207)
T ss_pred HcCchHHHHHHHHHHHHc
Confidence 555555555555555544
No 331
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.78 E-value=4.5 Score=24.81 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=11.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 011081 429 LIKGLCEEGKMEEALKVQAEMV 450 (494)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~ 450 (494)
+..+|...|+.+.|.+++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 3445555555555555555554
No 332
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=75.62 E-value=62 Score=29.27 Aligned_cols=48 Identities=19% Similarity=0.260 Sum_probs=29.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH-------HHHHHHHhcCCHHH
Q 011081 323 IIGGFCEIGEMARAEEFFREMGLSGVESSSVTFE-------HLVNGYCRAGDVDS 370 (494)
Q Consensus 323 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-------~li~~~~~~g~~~~ 370 (494)
+.+-..+.+++++|+..|.++...|+..+..+.| .+...|...|+...
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~ 63 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCS 63 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcch
Confidence 3444556677777777777777777766665442 34444455554443
No 333
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.23 E-value=46 Score=33.49 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=13.9
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 011081 316 DVVAYNTIIGGFCEIGEMARAEEFFREM 343 (494)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 343 (494)
+..-|..|.++..+.|++..|.+.|...
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 3344555555555555555555554443
No 334
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=75.14 E-value=32 Score=25.67 Aligned_cols=42 Identities=19% Similarity=0.129 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011081 370 SAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILK 411 (494)
Q Consensus 370 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 411 (494)
+..+-++.+...++.|+..+..+.+.+|.+.+++..|.++|+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE 69 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILE 69 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344445555555555565556666666666666666666655
No 335
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.47 E-value=41 Score=33.80 Aligned_cols=101 Identities=13% Similarity=0.113 Sum_probs=75.3
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHH
Q 011081 257 FYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARA 336 (494)
Q Consensus 257 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 336 (494)
..+.|+++.|.++..+.. +..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+-+..
T Consensus 647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence 345688888887766543 567899999999999999999999887664 45677778888887776
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 337 EEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDM 378 (494)
Q Consensus 337 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 378 (494)
..+-....+.| + .|....+|...|+++++.+++.+-
T Consensus 712 ~~la~~~~~~g-~-----~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 712 AVLASLAKKQG-K-----NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhc-c-----cchHHHHHHHcCCHHHHHHHHHhc
Confidence 66666666666 2 234445677789999998887653
No 336
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=74.30 E-value=33 Score=25.48 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=24.8
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011081 326 GFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 382 (494)
.+.+.|++++|..+.+.+ ..||...|-+|-. .+.|..+++..-+..|..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 344555555555554444 2455555544433 24444444444455554444
No 337
>PRK09687 putative lyase; Provisional
Probab=74.22 E-value=71 Score=29.23 Aligned_cols=235 Identities=11% Similarity=-0.001 Sum_probs=147.0
Q ss_pred CcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCH----hHHHH
Q 011081 193 SVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAF----EKVED 268 (494)
Q Consensus 193 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~----~~a~~ 268 (494)
.+|.......+.++...|. +.+......+.. .+|...=...+.++++.|+. .++..
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~-------------------~~d~~vR~~A~~aLg~lg~~~~~~~~a~~ 93 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCS-------------------SKNPIERDIGADILSQLGMAKRCQDNVFN 93 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh-------------------CCCHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 3456666666667766664 333334444432 23555555667777777763 46777
Q ss_pred HHHHHHHcCCCcCHhHHHHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 011081 269 VWVEMARLGCEPDCYSYSVLMAVFCEERRM-----REAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREM 343 (494)
Q Consensus 269 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-----~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 343 (494)
.+..+... .++...-...+.++...+.. ..+...+..... .++..+-...+.++.+.++ +++...+-.+
T Consensus 94 ~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~ 167 (280)
T PRK09687 94 ILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINL 167 (280)
T ss_pred HHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHH
Confidence 77776433 45666666666666655421 233344433333 3366677788888888887 5677777777
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC
Q 011081 344 GLSGVESSSVTFEHLVNGYCRAG-DVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPT 422 (494)
Q Consensus 344 ~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 422 (494)
.+ .+|...-...+.++.+.+ .-..+...+..+.. .++..+-...+.++.+.+. ..++..+.+.+.. ++
T Consensus 168 L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~----~~ 236 (280)
T PRK09687 168 LK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKK----GT 236 (280)
T ss_pred hc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcC----Cc
Confidence 65 445555566666666653 24467777777764 3467777888888888888 4666666655553 23
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011081 423 EKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYM 469 (494)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 469 (494)
.....+.++...|+. +|...+..+.+. .||..+-...+.++.
T Consensus 237 --~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 237 --VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred --hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 234678889999985 788888888864 557766666666554
No 338
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=74.14 E-value=24 Score=29.44 Aligned_cols=76 Identities=7% Similarity=0.059 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHc-----CCCcCH-hHHHHHHHHHHhcCC-----------HHHHHHHHHHHHhCC
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARL-----GCEPDC-YSYSVLMAVFCEERR-----------MREAEKLWEEMRDKN 312 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~~-~~~~~li~~~~~~g~-----------~~~a~~~~~~m~~~g 312 (494)
|...+.-+.+..+..++.+++++.... .+.|+. .++..+..+|...+. +++|...|+.....
T Consensus 31 WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~- 109 (186)
T PF06552_consen 31 WGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE- 109 (186)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc-
Confidence 333343444444434444444443321 234553 456666666554332 33344444444433
Q ss_pred CCCCHhHHHHHHHHH
Q 011081 313 VEHDVVAYNTIIGGF 327 (494)
Q Consensus 313 ~~~~~~~~~~li~~~ 327 (494)
.|+..+|+.-+...
T Consensus 110 -~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 110 -DPNNELYRKSLEMA 123 (186)
T ss_dssp --TT-HHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHH
Confidence 55666666555554
No 339
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=73.05 E-value=5.5 Score=20.99 Aligned_cols=11 Identities=27% Similarity=0.353 Sum_probs=4.1
Q ss_pred HHccCCHHHHH
Q 011081 327 FCEIGEMARAE 337 (494)
Q Consensus 327 ~~~~g~~~~A~ 337 (494)
+...|++++|.
T Consensus 11 ~~~~G~~~eA~ 21 (26)
T PF07721_consen 11 LLAQGDPDEAE 21 (26)
T ss_pred HHHcCCHHHHH
Confidence 33333333333
No 340
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=73.05 E-value=6.5 Score=21.69 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=16.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 428 FLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
.+..++.+.|+.++|.+.|+++++.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455566677777777777777653
No 341
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=73.00 E-value=53 Score=29.67 Aligned_cols=90 Identities=14% Similarity=0.011 Sum_probs=62.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 011081 286 SVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCR- 364 (494)
Q Consensus 286 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~- 364 (494)
..=|.+++..+++.++..+.-+--+.--+....+...-|-.|.|.|.+..+.++-..-.+.--.-+...|.+++..|..
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 3457888899999988766544333211234455666777899999999999998887765223344457777776655
Q ss_pred ----cCCHHHHHHHH
Q 011081 365 ----AGDVDSAILVY 375 (494)
Q Consensus 365 ----~g~~~~a~~~~ 375 (494)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 59999998877
No 342
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.95 E-value=9 Score=23.52 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=11.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 011081 464 FIDGYMKEGNVEMATMLRKEMFE 486 (494)
Q Consensus 464 li~~~~~~g~~~~a~~~~~~m~~ 486 (494)
|..+|...|+.+.|++++++.+.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555543
No 343
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=72.88 E-value=75 Score=28.93 Aligned_cols=146 Identities=10% Similarity=0.080 Sum_probs=94.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH-CCCCCChhhHHHHHH
Q 011081 320 YNTIIGGFCEIGEMARAEEFFREMGL-SGVESSSVTFEHLVNGYCRAG--DVDSAILVYNDMCR-KGFEPEGSTIEVLIG 395 (494)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~-~~~~p~~~~~~~li~ 395 (494)
|..|+. ++....+|+++|+.... ..+--|..+...+++...... ....-.++.+.+.. .+-.++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555543 23445677777774322 234556777777777766522 22223334444433 345678888899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-----HhCCCCCCHHHHHHHHHHH
Q 011081 396 ELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEM-----VGKGFEPSLEIYSAFIDGY 468 (494)
Q Consensus 396 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~~~~p~~~~~~~li~~~ 468 (494)
.++..+++.+-.+++.......+..-|...|..+|......|+..-..++.++- .+.++..+...-..|-..+
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 999999999999999866655455668888999999999999987777766543 2335555555544444433
No 344
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.64 E-value=1.4e+02 Score=32.06 Aligned_cols=115 Identities=10% Similarity=0.060 Sum_probs=68.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcC---CCcCHhHHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCCCCHhHHHH--
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARLG---CEPDCYSYSVLMAVFCEERRM--REAEKLWEEMRDKNVEHDVVAYNT-- 322 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~g~~~~~~~~~~-- 322 (494)
|..|+..|...|+.++|+++|.+....- -.--...+..++.-+-+.+.. +-++++-+...+........++..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 7889999999999999999999987631 000112233355555555544 555555555544321111111111
Q ss_pred ----------HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011081 323 ----------IIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCR 364 (494)
Q Consensus 323 ----------li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 364 (494)
-+-.|......+-+..+++.+....-..+....+.++..|+.
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 233455666777778888887766556666777777777654
No 345
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=72.61 E-value=9.3 Score=25.53 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=11.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 462 SAFIDGYMKEGNVEMATMLRKEMF 485 (494)
Q Consensus 462 ~~li~~~~~~g~~~~a~~~~~~m~ 485 (494)
-.+|.+|...|++++|.++++++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334455555555555555544443
No 346
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=71.96 E-value=27 Score=27.63 Aligned_cols=21 Identities=10% Similarity=0.162 Sum_probs=11.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 011081 431 KGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~ 451 (494)
-++.+.+++++++++.+.+.+
T Consensus 79 vg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 79 VGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHHhhHHHHHHHHHHHHh
Confidence 345555555555555555553
No 347
>PRK13342 recombination factor protein RarA; Reviewed
Probab=71.10 E-value=1.1e+02 Score=29.97 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHh---CCC-CcChHhHHHHHHHHHcCCChhHHHHHHHHH
Q 011081 178 ETCVDIVRMLMS---RGL-SVKVSTCNALIWEVSRGKGVISGYEIYREV 222 (494)
Q Consensus 178 ~~a~~~~~~m~~---~g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 222 (494)
++...+++.... .|+ ..+......++.. + .|+...++.+++.+
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~-s-~Gd~R~aln~Le~~ 200 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARL-A-NGDARRALNLLELA 200 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHh-C-CCCHHHHHHHHHHH
Confidence 344444444332 133 4444444444433 2 57777777777665
No 348
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=70.56 E-value=1.2e+02 Score=31.53 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=15.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHccc
Q 011081 466 DGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 466 ~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
.+-.-..++.+|.+..+.|.+.++
T Consensus 374 ~asVLAnd~~kaiqAae~mfKLk~ 397 (1226)
T KOG4279|consen 374 EASVLANDYQKAIQAAEMMFKLKP 397 (1226)
T ss_pred hhhhhccCHHHHHHHHHHHhccCC
Confidence 344455677777777777776543
No 349
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=69.92 E-value=43 Score=24.91 Aligned_cols=85 Identities=16% Similarity=0.190 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHH
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVG 256 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 256 (494)
-++|.-+-+-+...+-. ...+--.-+..+.+.|++++|..+.+.. ..||.+.|-+|-.
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~--------------------~~pdlepw~ALce- 78 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL--------------------CYPDLEPWLALCE- 78 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC--------------------CCchHHHHHHHHH-
Confidence 45555555555443322 1111112233466778888888776555 3678888877644
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCcCHhHH
Q 011081 257 FYREGAFEKVEDVWVEMARLGCEPDCYSY 285 (494)
Q Consensus 257 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 285 (494)
.+.|..+++..-+.+|..+| .|....|
T Consensus 79 -~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 79 -WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred -HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 35677777777777777766 4444444
No 350
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=69.53 E-value=59 Score=26.31 Aligned_cols=50 Identities=12% Similarity=0.179 Sum_probs=30.1
Q ss_pred hcCCHhHHHHHHHHHHHcCCCcC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011081 259 REGAFEKVEDVWVEMARLGCEPD---CYSYSVLMAVFCEERRMREAEKLWEEMRDKN 312 (494)
Q Consensus 259 ~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 312 (494)
..++++++..+++.|.-. .|+ ..++... .+...|++++|.++|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 366777777777777543 333 2233322 3556777777777777776653
No 351
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=69.23 E-value=1.2e+02 Score=29.97 Aligned_cols=164 Identities=16% Similarity=0.178 Sum_probs=101.3
Q ss_pred ccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHH
Q 011081 244 RPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTI 323 (494)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 323 (494)
..|....-+++..+.++-.+.-++.+-.+|..-| -+...|..++..|... .-+.-..+|+++.+..+. |++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 3466667788888888888888888889998875 3667888889888888 557778888888887542 44444555
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCChhhHHHHHHHH
Q 011081 324 IGGFCEIGEMARAEEFFREMGLSGVES-----SSVTFEHLVNGYCRAGDVDSAILVYNDMCR-KGFEPEGSTIEVLIGEL 397 (494)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~ 397 (494)
..-|-+ ++.+.+..+|.....+=++. -...|..+...- ..+.+..+.+...+.+ .|..--.+.+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 555555 78888888888876553221 112344333311 2344445555444443 22222333444444555
Q ss_pred HhcCCHHHHHHHHHHHH
Q 011081 398 CDKRRVFEALDILKARV 414 (494)
Q Consensus 398 ~~~~~~~~a~~~~~~~~ 414 (494)
....++.+|++++...+
T Consensus 216 s~~eN~~eai~Ilk~il 232 (711)
T COG1747 216 SENENWTEAIRILKHIL 232 (711)
T ss_pred ccccCHHHHHHHHHHHh
Confidence 55666666666665333
No 352
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=69.18 E-value=1.2e+02 Score=29.75 Aligned_cols=112 Identities=10% Similarity=0.005 Sum_probs=72.1
Q ss_pred HHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhc
Q 011081 181 VDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYRE 260 (494)
Q Consensus 181 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 260 (494)
.+++..+.+..-.|+.....+. .+...|+++.+.+......+. +.....+...++....+.
T Consensus 310 ~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-----------------~~s~~~~~~~~~r~~~~l 370 (831)
T PRK15180 310 QQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-----------------IGTTDSTLRCRLRSLHGL 370 (831)
T ss_pred HHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-----------------hcCCchHHHHHHHhhhch
Confidence 4455555554444554443333 355678888888777655332 123556777888888889
Q ss_pred CCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011081 261 GAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKN 312 (494)
Q Consensus 261 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 312 (494)
|++++|..+-.-|....++ +...........-..|-+|++...|+++....
T Consensus 371 ~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 371 ARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9999999988888876654 33333333334455677888888888887654
No 353
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=68.96 E-value=1e+02 Score=28.76 Aligned_cols=148 Identities=14% Similarity=0.099 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011081 333 MARAEEFFREMGLSGV----ESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALD 408 (494)
Q Consensus 333 ~~~A~~~~~~m~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 408 (494)
.++|.+.|++....+. ..+......++....+.|+.+.-..+++..... .+...-..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 4677888888777522 334555556666667777765555555544433 356667778888888888887777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHH----HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011081 409 ILKARVVKFGLFPTEKSYMFLIKGLCEEGKM--EEALKVQA----EMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRK 482 (494)
Q Consensus 409 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--~~A~~~~~----~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 482 (494)
++...+....+++.. . ..++.++...+.. +.+.+++. .+.+. +..+......++..+...-..++-.+-++
T Consensus 223 ~l~~~l~~~~v~~~d-~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 299 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD-I-RYVLAGLASSNPVGRDLAWEFFKENWDAIIKK-FGTNSSALSRVIKSFAGNFSTEEQLDELE 299 (324)
T ss_dssp HHHHHHCTSTS-TTT-H-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCH-C-TTSHCCHHHHHCCCTT--SHHHHHHHH
T ss_pred HHHHHcCCcccccHH-H-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHhccCCCHHHHHHHH
Confidence 777444432244443 2 3344444423332 55555443 33322 33333355556655444333444444455
Q ss_pred HHHH
Q 011081 483 EMFE 486 (494)
Q Consensus 483 ~m~~ 486 (494)
++.+
T Consensus 300 ~f~~ 303 (324)
T PF11838_consen 300 EFFE 303 (324)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5553
No 354
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=67.74 E-value=68 Score=29.08 Aligned_cols=98 Identities=15% Similarity=0.214 Sum_probs=59.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCCCHHHHHHHHH---HHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 011081 386 EGSTIEVLIGELCDKRRVFEALDILKARVVK---FGLFPTEKSYMFLIK---GLCEEGKMEEALKVQAEMVGKGFEPSLE 459 (494)
Q Consensus 386 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~p~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 459 (494)
-...+..+...|++.++.+.+.+...+.|.+ .|.+.|.. -+.|. .|....-+++-++..+.|.++|-.-+..
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~--l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRr 191 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVF--LCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERR 191 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhH--HHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhh
Confidence 4556777888999999999999888876654 35555543 23332 2333334678888888888887543321
Q ss_pred -HHHHHHHHH-HhcCCHHHHHHHHHHHH
Q 011081 460 -IYSAFIDGY-MKEGNVEMATMLRKEMF 485 (494)
Q Consensus 460 -~~~~li~~~-~~~g~~~~a~~~~~~m~ 485 (494)
-|...-..+ ....++.+|-.++-+..
T Consensus 192 NRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 192 NRYKVYKGIFKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 222222222 23356777777766554
No 355
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=67.57 E-value=1e+02 Score=28.30 Aligned_cols=19 Identities=32% Similarity=0.641 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhcCCHHHH
Q 011081 424 KSYMFLIKGLCEEGKMEEA 442 (494)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A 442 (494)
.+|..|+.+++..|+.+-.
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 3456666666666655544
No 356
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.42 E-value=1.2e+02 Score=29.08 Aligned_cols=24 Identities=8% Similarity=0.106 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 285 YSVLMAVFCEERRMREAEKLWEEM 308 (494)
Q Consensus 285 ~~~li~~~~~~g~~~~a~~~~~~m 308 (494)
+.-+.+.|..+|+++.|++.|.+.
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~ 176 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRA 176 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhh
Confidence 344445555555555555555553
No 357
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=67.40 E-value=31 Score=29.39 Aligned_cols=34 Identities=24% Similarity=0.091 Sum_probs=20.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 418 GLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 418 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (494)
...|+...|..++.++...|+.++|.++..++..
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3346666666666666666666666666666653
No 358
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=67.04 E-value=66 Score=25.94 Aligned_cols=24 Identities=4% Similarity=0.227 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 355 FEHLVNGYCRAGDVDSAILVYNDM 378 (494)
Q Consensus 355 ~~~li~~~~~~g~~~~a~~~~~~m 378 (494)
.++++......+++...+.+++.+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l 65 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHL 65 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHH
Confidence 455555555566666666665555
No 359
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=66.87 E-value=35 Score=24.04 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=40.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 430 IKGLCEEGKMEEALKVQAEMVGKGFEPS--LEIYSAFIDGYMKEGNVEMATMLRKE 483 (494)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~ 483 (494)
+..| ...+.++|+..|...++.-..+. -.++..|+.+|+..|++.+++++.-.
T Consensus 14 lkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 14 LKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 66788999999999987633332 45778889999999999999886433
No 360
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=66.86 E-value=25 Score=21.98 Aligned_cols=34 Identities=15% Similarity=0.232 Sum_probs=26.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011081 433 LCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFID 466 (494)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 466 (494)
..+.|-+.++..++++|.+.|+.-+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3466788888888888888888888877777665
No 361
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=66.50 E-value=1e+02 Score=27.97 Aligned_cols=199 Identities=14% Similarity=0.082 Sum_probs=111.8
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhH-------HHHHHHHHHhcCCHHHHHHHHHH----HHhCCCCCCHhHHH
Q 011081 253 LMVGFYREGAFEKVEDVWVEMARLGCEPDCYS-------YSVLMAVFCEERRMREAEKLWEE----MRDKNVEHDVVAYN 321 (494)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-------~~~li~~~~~~g~~~~a~~~~~~----m~~~g~~~~~~~~~ 321 (494)
+.+...+.+++++|+..+.+....|+..|..+ ...+...|...|++..-.+.... |.+..-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 44556678899999999999999988777654 45677888888887665554432 33332233455667
Q ss_pred HHHHHHHcc-CCHHHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHH----HHCCCCCChhhHH
Q 011081 322 TIIGGFCEI-GEMARAEEFFREMGLSGVESSSV-----TFEHLVNGYCRAGDVDSAILVYNDM----CRKGFEPEGSTIE 391 (494)
Q Consensus 322 ~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~-----~~~~li~~~~~~g~~~~a~~~~~~m----~~~~~~p~~~~~~ 391 (494)
+||..+-.. ..++..+++.....+...+-... .=..++..+.+.|.+.+|+.+...+ .+.+-+|+..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 777776554 34566666665554432121111 1245788899999999999876654 4455566655443
Q ss_pred HHH-HHHHhcCCHHHHHHHHHHHH---HhCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHh
Q 011081 392 VLI-GELCDKRRVFEALDILKARV---VKFGLFPTEKSYMFLIKGL--CEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 392 ~li-~~~~~~~~~~~a~~~~~~~~---~~~~~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~ 451 (494)
.+= .+|....++.++..-+...- ...=++|....---++++- |...++..|..+|-+..+
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 321 23333333333332222111 1111233333222333332 334456666666666654
No 362
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=66.21 E-value=13 Score=19.54 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 461 YSAFIDGYMKEGNVEMATMLRKEMFE 486 (494)
Q Consensus 461 ~~~li~~~~~~g~~~~a~~~~~~m~~ 486 (494)
|..+...+...|++++|...+++.++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 33444445555555555555555444
No 363
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=64.85 E-value=1.2e+02 Score=28.32 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=17.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC
Q 011081 430 IKGLCEEGKMEEALKVQAEMVGKGF 454 (494)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~~~ 454 (494)
...+...|-.+.|..+++-+.+.++
T Consensus 161 ~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 161 CRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHCCchHHHHHHHHHHHHHHc
Confidence 3344567888888888888877654
No 364
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=64.79 E-value=37 Score=28.96 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 455 EPSLEIYSAFIDGYMKEGNVEMATMLRKEMFE 486 (494)
Q Consensus 455 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 486 (494)
.|+..+|..++.++...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555555555555554443
No 365
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=64.41 E-value=1.3e+02 Score=28.34 Aligned_cols=51 Identities=24% Similarity=0.369 Sum_probs=23.8
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 255 VGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMR 309 (494)
Q Consensus 255 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 309 (494)
.+.-+.|+|+...++....... .++...|.++... +.++++++....+...
T Consensus 6 eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r 56 (352)
T PF02259_consen 6 EAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKAR 56 (352)
T ss_pred HHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHH
Confidence 4445556666644444433322 1233334433332 5566666665555543
No 366
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.36 E-value=1e+02 Score=27.18 Aligned_cols=19 Identities=5% Similarity=0.191 Sum_probs=9.8
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 011081 435 EEGKMEEALKVQAEMVGKG 453 (494)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~~ 453 (494)
..+++.+|+++|++.....
T Consensus 166 ~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555443
No 367
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=64.24 E-value=1e+02 Score=27.17 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011081 421 PTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSL 458 (494)
Q Consensus 421 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 458 (494)
|.+.....++..|.. +++++|.+++.++.+.|+.|..
T Consensus 237 PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 237 PHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred CChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHH
Confidence 555555566655443 5677777777777777776653
No 368
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=63.25 E-value=1.3e+02 Score=28.12 Aligned_cols=136 Identities=11% Similarity=0.035 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHHhcCC------------HhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011081 246 NVHTFNALMVGFYREGA------------FEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNV 313 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~------------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 313 (494)
|+.+|-.++..--..-. .+.-+.++++.++.+ +-+......+|..+.+..+.+...+-|+.+....
T Consensus 18 di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~- 95 (321)
T PF08424_consen 18 DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN- 95 (321)
T ss_pred cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-
Confidence 78888888754333211 345677888877774 4566777888888999889999999999998873
Q ss_pred CCCHhHHHHHHHHHHc---cCCHHHHHHHHHHHHhC------CC----CCCH-------HHHHHHHHHHHhcCCHHHHHH
Q 011081 314 EHDVVAYNTIIGGFCE---IGEMARAEEFFREMGLS------GV----ESSS-------VTFEHLVNGYCRAGDVDSAIL 373 (494)
Q Consensus 314 ~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~------~~----~~~~-------~~~~~li~~~~~~g~~~~a~~ 373 (494)
+-+...|...|..... .-.++....+|.+.... +. .+-. ..+.-+...+...|..+.|..
T Consensus 96 ~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava 175 (321)
T PF08424_consen 96 PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVA 175 (321)
T ss_pred CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHH
Confidence 3367788887776544 23456666666654332 11 0111 122333344567899999999
Q ss_pred HHHHHHHCCC
Q 011081 374 VYNDMCRKGF 383 (494)
Q Consensus 374 ~~~~m~~~~~ 383 (494)
+++-+.+.++
T Consensus 176 ~~Qa~lE~n~ 185 (321)
T PF08424_consen 176 LWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHc
Confidence 9999888665
No 369
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=62.62 E-value=1.2e+02 Score=31.79 Aligned_cols=87 Identities=11% Similarity=0.069 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHH-HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CC----------CCHHHHHHHHHHHH
Q 011081 368 VDSAILVYNDMC-RKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFG--LF----------PTEKSYMFLIKGLC 434 (494)
Q Consensus 368 ~~~a~~~~~~m~-~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~----------p~~~~~~~li~~~~ 434 (494)
.++....+.... +.|+..+......++... .|++..++.++++.+...+ +. .+......++.++.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~ 257 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII 257 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH
Confidence 345555555444 467777777777666543 6899999999876554211 11 12222334455444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC
Q 011081 435 EEGKMEEALKVQAEMVGKGFEPS 457 (494)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~~~~p~ 457 (494)
. ++...++.+++++.+.|+.+.
T Consensus 258 ~-~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 258 N-QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred c-CCHHHHHHHHHHHHHhCCCHH
Confidence 4 788888888888887776544
No 370
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=61.68 E-value=97 Score=26.04 Aligned_cols=110 Identities=11% Similarity=0.122 Sum_probs=54.4
Q ss_pred HhHHHHHHHHHHHcCCCcCHhHHHHHHHH---HHhcCC-------HHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHccC
Q 011081 263 FEKVEDVWVEMARLGCEPDCYSYSVLMAV---FCEERR-------MREAEKLWEEMRDKNVEHD-VVAYNTIIGGFCEIG 331 (494)
Q Consensus 263 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~---~~~~g~-------~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g 331 (494)
++.|.+.++.-...+ +.|....+.-..+ +++... +++|..-|++.+.. .|+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHH
Confidence 345555555533332 3344443333333 333333 33444444444443 444 356666766665443
Q ss_pred C-----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011081 332 E-----------MARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGF 383 (494)
Q Consensus 332 ~-----------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 383 (494)
. +++|.+.|++.... .|+..+|+.-+... ++|-+++.++.+.+.
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHHHh
Confidence 2 44455555555543 67778887777765 346677777766654
No 371
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=60.76 E-value=1.4e+02 Score=27.67 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=15.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 011081 358 LVNGYCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 358 li~~~~~~g~~~~a~~~~~~m~~~ 381 (494)
|.-+-.+.|+..+|.+.|+++.+.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke 304 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE 304 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh
Confidence 333445667777787777777654
No 372
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=59.38 E-value=35 Score=22.74 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=9.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 011081 287 VLMAVFCEERRMREAEKLWEEM 308 (494)
Q Consensus 287 ~li~~~~~~g~~~~a~~~~~~m 308 (494)
.+|.+|...|++++|.++.+.+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444455555554444444
No 373
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=59.18 E-value=2.1e+02 Score=29.01 Aligned_cols=345 Identities=7% Similarity=0.003 Sum_probs=0.0
Q ss_pred CHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHH
Q 011081 104 SLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDI 183 (494)
Q Consensus 104 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~ 183 (494)
+...|..+|.---...+.+.++.++..++. +.+.----|-.....=.+.|. .+.+..+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~-------------------kyPl~~gyW~kfA~~E~klg~---~~~s~~V 101 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLS-------------------KYPLCYGYWKKFADYEYKLGN---AENSVKV 101 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHh-------------------hCccHHHHHHHHHHHHHHhhh---HHHHHHH
Q ss_pred HHHHHhCCCCcChHhHHHHHHHHHcC-CChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCC
Q 011081 184 VRMLMSRGLSVKVSTCNALIWEVSRG-KGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGA 262 (494)
Q Consensus 184 ~~~m~~~g~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 262 (494)
|++.+. |+..++..|...+..++.. |+.+.....|+.+...... --.....|...|.--...++
T Consensus 102 fergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~--------------dF~S~~lWdkyie~en~qks 166 (577)
T KOG1258|consen 102 FERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGL--------------DFLSDPLWDKYIEFENGQKS 166 (577)
T ss_pred HHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhccc--------------chhccHHHHHHHHHHhcccc
Q ss_pred HhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHh-----cCCHHHHHHHHHHHHh-CCCCCCHhHHHHHHHHHHccCCHHHH
Q 011081 263 FEKVEDVWVEMARLGCEPDCYSYSVLMAVFCE-----ERRMREAEKLWEEMRD-KNVEHDVVAYNTIIGGFCEIGEMARA 336 (494)
Q Consensus 263 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~A 336 (494)
+.....++++.++....-=...|.......-. ....+++.++-..... ....-.......+=..--..++....
T Consensus 167 ~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~ 246 (577)
T KOG1258|consen 167 WKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKS 246 (577)
T ss_pred HHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccch
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 011081 337 EEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVK 416 (494)
Q Consensus 337 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 416 (494)
...-+.+...-+..-..+|+--.....+.--+++...---.+.+--..++..+|...+.--...|+.+.+.-+|++...
T Consensus 247 l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli- 325 (577)
T KOG1258|consen 247 LTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLI- 325 (577)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHh-
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011081 417 FGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFEN 487 (494)
Q Consensus 417 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 487 (494)
.+.--...|--.+.-....|+.+-|..++....+--.+-...+--.--.-.-..|++..|..+++.+.+.
T Consensus 326 -~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 326 -PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE 395 (577)
T ss_pred -HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh
No 374
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=58.76 E-value=77 Score=23.95 Aligned_cols=79 Identities=10% Similarity=0.093 Sum_probs=34.0
Q ss_pred CHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHH
Q 011081 262 AFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFR 341 (494)
Q Consensus 262 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 341 (494)
..++|..+.+.+...+. -...+--+-+..+.+.|+|++| +..-.. ...||...|-+|.. .+.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~-~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQC-HCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHTT-S--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhccc-CCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 35566666666555442 1222222233345556666666 111111 12455555544433 34555555555555
Q ss_pred HHHhCC
Q 011081 342 EMGLSG 347 (494)
Q Consensus 342 ~m~~~~ 347 (494)
++..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 555544
No 375
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=58.47 E-value=1.3e+02 Score=26.30 Aligned_cols=65 Identities=12% Similarity=0.092 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK 311 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 311 (494)
-...||-+.--+...|+++.|.+.|+...+..-.-+-...|.-| ++.-.|++.-|.+=+...-+.
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhc
Confidence 36778888888999999999999999998764211111122222 233468888888777766555
No 376
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=58.43 E-value=32 Score=22.13 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=22.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011081 429 LIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFI 465 (494)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 465 (494)
+.-++.+.|++++|.+..+.+++. .|+-.-...|-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L~ 41 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHHH
Confidence 445677888888888888888753 77665444443
No 377
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=58.41 E-value=43 Score=20.96 Aligned_cols=11 Identities=9% Similarity=0.371 Sum_probs=3.9
Q ss_pred HHHHHHHHhCC
Q 011081 302 EKLWEEMRDKN 312 (494)
Q Consensus 302 ~~~~~~m~~~g 312 (494)
..++++|.+.|
T Consensus 22 ~~~l~~l~~~g 32 (48)
T PF11848_consen 22 KPLLDRLQQAG 32 (48)
T ss_pred HHHHHHHHHcC
Confidence 33333333333
No 378
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=57.92 E-value=99 Score=24.94 Aligned_cols=110 Identities=9% Similarity=0.118 Sum_probs=65.2
Q ss_pred ccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCC
Q 011081 244 RPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCY--SYSVLMAVFCEERRMREAEKLWEEMRDKN-----VEHD 316 (494)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~~~ 316 (494)
.++..+|...+.. ....|.+.+..++.. ..+.++.-....+++.....+++.+.... -..+
T Consensus 11 ~~nL~~w~~fi~~------------~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~ 78 (145)
T PF13762_consen 11 LANLEVWKTFINS------------HLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLD 78 (145)
T ss_pred hhhHHHHHHHHHH------------HHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcc
Confidence 4466666655532 223344444454443 35677777777788888777777763221 0234
Q ss_pred HhHHHHHHHHHHccCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011081 317 VVAYNTIIGGFCEIGE-MARAEEFFREMGLSGVESSSVTFEHLVNGYCRA 365 (494)
Q Consensus 317 ~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 365 (494)
...|.+++.+..+..- ---+..+|.-|.+.+.+.+..-|..+|.++.+-
T Consensus 79 ~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 79 NSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 4567777777755544 334566677776666677777777777766553
No 379
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=57.88 E-value=2e+02 Score=28.50 Aligned_cols=87 Identities=8% Similarity=0.011 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011081 392 VLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCE--EGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYM 469 (494)
Q Consensus 392 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 469 (494)
.++..+-+.+-..+|...+.....-. +|+...|..+|..=.. .-++..+.++++.|... +..|+..|--.+.--.
T Consensus 465 ~~l~~~~e~~~~~~ark~y~~l~~lp--p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg~d~~lw~~y~~~e~ 541 (568)
T KOG2396|consen 465 KYLDWAYESGGYKKARKVYKSLQELP--PFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FGADSDLWMDYMKEEL 541 (568)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhCC--CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hCCChHHHHHHHHhhc
Confidence 34444555555555555555322221 2344445444432111 11255555556555543 2245555555555444
Q ss_pred hcCCHHHHHHHH
Q 011081 470 KEGNVEMATMLR 481 (494)
Q Consensus 470 ~~g~~~~a~~~~ 481 (494)
.+|..+.+-.++
T Consensus 542 ~~g~~en~~~~~ 553 (568)
T KOG2396|consen 542 PLGRPENCGQIY 553 (568)
T ss_pred cCCCcccccHHH
Confidence 555555544443
No 380
>PRK10941 hypothetical protein; Provisional
Probab=56.99 E-value=1.5e+02 Score=27.02 Aligned_cols=65 Identities=9% Similarity=-0.047 Sum_probs=54.0
Q ss_pred hHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcc
Q 011081 160 VFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSD 228 (494)
Q Consensus 160 ~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 228 (494)
..+.+-.+|.+.++ ++.|+.+.+.+...... ++.-+.--.-.|.+.|.+..|..=++...+..|+
T Consensus 183 ml~nLK~~~~~~~~---~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 183 LLDTLKAALMEEKQ---MELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHHHcCc---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 35567788899999 99999999999986644 6677777778899999999999999988877665
No 381
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=56.85 E-value=84 Score=24.58 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 265 KVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK 311 (494)
Q Consensus 265 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 311 (494)
+..+-++.+..-.+.|+......-+++|.+.+++..|.++|+.++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45566666777778888888888999999999999999998888654
No 382
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=56.54 E-value=1.7e+02 Score=27.20 Aligned_cols=87 Identities=7% Similarity=-0.064 Sum_probs=49.8
Q ss_pred CChhcHHHHHHHHHHHHhCCC----CcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCH
Q 011081 172 KNIEKIETCVDIVRMLMSRGL----SVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNV 247 (494)
Q Consensus 172 ~~~~~~~~a~~~~~~m~~~g~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 247 (494)
|+.+..++|.+.|+.....+. ..++.....++....+.|+.+.-..+++.... ..+.
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~-------------------~~~~ 201 (324)
T PF11838_consen 141 GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN-------------------STSP 201 (324)
T ss_dssp T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT-------------------TSTH
T ss_pred cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc-------------------cCCH
Confidence 665567788888888776422 33445555566666666665544444444432 2355
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 011081 248 HTFNALMVGFYREGAFEKVEDVWVEMARLG 277 (494)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 277 (494)
.--..++.+.+...+.+...++++.....+
T Consensus 202 ~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~ 231 (324)
T PF11838_consen 202 EEKRRLLSALACSPDPELLKRLLDLLLSND 231 (324)
T ss_dssp HHHHHHHHHHTT-S-HHHHHHHHHHHHCTS
T ss_pred HHHHHHHHhhhccCCHHHHHHHHHHHcCCc
Confidence 666777777777777777777777776643
No 383
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.50 E-value=2e+02 Score=29.80 Aligned_cols=87 Identities=11% Similarity=0.167 Sum_probs=53.1
Q ss_pred HHHHHHHHHH-HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC------------CHHHHHHHHHHHH
Q 011081 368 VDSAILVYND-MCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFP------------TEKSYMFLIKGLC 434 (494)
Q Consensus 368 ~~~a~~~~~~-m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p------------~~~~~~~li~~~~ 434 (494)
.++..+.+.. +.+.|+..+......++. ...|++..++.++++.+...+-.. +......++.++.
T Consensus 185 ~eei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~ 262 (618)
T PRK14951 185 PETVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALA 262 (618)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3444445544 345687777777766665 456899999998875443221111 2223334555444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC
Q 011081 435 EEGKMEEALKVQAEMVGKGFEPS 457 (494)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~~~~p~ 457 (494)
. |+...++++++++.+.|..+.
T Consensus 263 ~-~d~~~al~~l~~l~~~G~~~~ 284 (618)
T PRK14951 263 Q-GDGRTVVETADELRLNGLSAA 284 (618)
T ss_pred c-CCHHHHHHHHHHHHHcCCCHH
Confidence 4 788888888888888776544
No 384
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=55.34 E-value=2.9e+02 Score=29.57 Aligned_cols=198 Identities=14% Similarity=0.029 Sum_probs=107.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH-------hHHHHHHH-HHHccCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 011081 293 CEERRMREAEKLWEEMRDKNVEHDV-------VAYNTIIG-GFCEIGEMARAEEFFREMGLS----GVESSSVTFEHLVN 360 (494)
Q Consensus 293 ~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~-~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~li~ 360 (494)
....++++|..+..++...-..|+. ..++++-. .....|++++|.++-+..... -..+..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4468899999998887654222222 23444433 233578899998888876653 22345566777788
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhH---HHH--HHHHHhcCCHHHHHH--HHHHH----HHhCCC-CCCHHHHHH
Q 011081 361 GYCRAGDVDSAILVYNDMCRKGFEPEGSTI---EVL--IGELCDKRRVFEALD--ILKAR----VVKFGL-FPTEKSYMF 428 (494)
Q Consensus 361 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~---~~l--i~~~~~~~~~~~a~~--~~~~~----~~~~~~-~p~~~~~~~ 428 (494)
+..-.|++++|..+..+..+.--.-+...+ ..+ ...+..+|+...+.. .+... ....++ .+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 888889999999988776653222233322 222 233455663333222 22211 111110 122345555
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 429 LIKGLCEE-GKMEEALKVQAEMVGKGFEPSLEIY--SAFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 429 li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
+..++.+. +...++..-+.........|-...+ ..|.......|+.++|...++++......
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 66666552 1222222223322222222222222 35677788889999999999888765443
No 385
>PHA02875 ankyrin repeat protein; Provisional
Probab=55.30 E-value=2.1e+02 Score=27.83 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=8.5
Q ss_pred HHHHHhcCCHhHHHHHH
Q 011081 254 MVGFYREGAFEKVEDVW 270 (494)
Q Consensus 254 i~~~~~~g~~~~a~~~~ 270 (494)
+...++.|+.+.+..++
T Consensus 72 L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 72 LHDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHHCCCHHHHHHHH
Confidence 34444566665544444
No 386
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.99 E-value=2e+02 Score=28.71 Aligned_cols=88 Identities=10% Similarity=0.074 Sum_probs=47.9
Q ss_pred HHHHHHHHHHH-HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC------------CHHHHHHHHHHHHh
Q 011081 369 DSAILVYNDMC-RKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFP------------TEKSYMFLIKGLCE 435 (494)
Q Consensus 369 ~~a~~~~~~m~-~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p------------~~~~~~~li~~~~~ 435 (494)
++..+.++... ..|+..+......++. ...|....|+.+++..+...+-.. +...+..++.+...
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~lg~~~~~~~~~l~~si~~ 260 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGYHGIEFLTSFIKSLID 260 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCCHHHHHHHHHHHHc
Confidence 34455555443 4677767776665554 457999999999985443221111 11222333333333
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH
Q 011081 436 EGKMEEALKVQAEMVGKGFEPSL 458 (494)
Q Consensus 436 ~g~~~~A~~~~~~m~~~~~~p~~ 458 (494)
.+....|+.++.+|.+.|..|..
T Consensus 261 ~d~~~~al~~l~~l~~~G~d~~~ 283 (484)
T PRK14956 261 PDNHSKSLEILESLYQEGQDIYK 283 (484)
T ss_pred CCcHHHHHHHHHHHHHcCCCHHH
Confidence 33345666666666666655543
No 387
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.33 E-value=1.7e+02 Score=26.43 Aligned_cols=202 Identities=12% Similarity=0.107 Sum_probs=108.9
Q ss_pred ccccCHHHHHHHHHHH-HhcCCHhHHHHHHHHHHHcCCCcCHhHH---HHHHHHHHhcCCHHHHHHHHHHHHhC---CC-
Q 011081 242 RVRPNVHTFNALMVGF-YREGAFEKVEDVWVEMARLGCEPDCYSY---SVLMAVFCEERRMREAEKLWEEMRDK---NV- 313 (494)
Q Consensus 242 ~~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~---g~- 313 (494)
+-+||+..=|..-+.- .+..++++|+.-|.+..+..-+....-| ..+|..+.+.+++++....|.++... .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3467666544332211 2334778888888887765323333333 45677788888888888888877532 11
Q ss_pred -CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----
Q 011081 314 -EHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS-----GVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGF---- 383 (494)
Q Consensus 314 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---- 383 (494)
.-+..+.|++++......+.+--..+|+.-... +-+.--.|-+.|...|...|.+.+..++++++...--
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 123445666666666566665555555543221 1111222335566677777777777777777765311
Q ss_pred CCC-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----HhcCCHHHHHH
Q 011081 384 EPE-------GSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGL-----CEEGKMEEALK 444 (494)
Q Consensus 384 ~p~-------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~-----~~~g~~~~A~~ 444 (494)
.-| ...|..=|..|....+-.+...++++.+.-..--|.+..... |+-| .+.|++++|-.
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGv-IRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGV-IRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhH-HHHcCCccccccchHHHHHh
Confidence 111 123445556666666655666666655544444455544432 3322 34556665543
No 388
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=54.21 E-value=2.1e+02 Score=27.58 Aligned_cols=57 Identities=12% Similarity=0.185 Sum_probs=40.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHh--HHHHHHHHHH--ccCCHHHHHHHHHHHHhC
Q 011081 289 MAVFCEERRMREAEKLWEEMRDKNVEHDVV--AYNTIIGGFC--EIGEMARAEEFFREMGLS 346 (494)
Q Consensus 289 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~--~~g~~~~A~~~~~~m~~~ 346 (494)
+..+.+.+++..|.++++.+... ++++.. .|..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33455889999999999999886 555544 4555555553 467788899998887654
No 389
>PLN03025 replication factor C subunit; Provisional
Probab=53.36 E-value=1.7e+02 Score=27.40 Aligned_cols=89 Identities=17% Similarity=0.174 Sum_probs=58.2
Q ss_pred HHHHHHHHHH-HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHhc
Q 011081 369 DSAILVYNDM-CRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFG-----------LFPTEKSYMFLIKGLCEE 436 (494)
Q Consensus 369 ~~a~~~~~~m-~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~~p~~~~~~~li~~~~~~ 436 (494)
++....+... .+.|+..+......++.. ..|+...++..++......+ -.+.......++... ..
T Consensus 161 ~~l~~~L~~i~~~egi~i~~~~l~~i~~~--~~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~-~~ 237 (319)
T PLN03025 161 QEILGRLMKVVEAEKVPYVPEGLEAIIFT--ADGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNC-LK 237 (319)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHH-Hc
Confidence 4555555544 456887777778777764 46999999999874222111 112223334455554 45
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHH
Q 011081 437 GKMEEALKVQAEMVGKGFEPSLEI 460 (494)
Q Consensus 437 g~~~~A~~~~~~m~~~~~~p~~~~ 460 (494)
+++++|...+.+|...|..|....
T Consensus 238 ~~~~~a~~~l~~ll~~g~~~~~Il 261 (319)
T PLN03025 238 GKFDDACDGLKQLYDLGYSPTDII 261 (319)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHH
Confidence 899999999999999998876433
No 390
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=53.18 E-value=71 Score=24.94 Aligned_cols=52 Identities=12% Similarity=0.311 Sum_probs=38.2
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011081 414 VVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFID 466 (494)
Q Consensus 414 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 466 (494)
+....+.|++.....-+.+|-+.+++..|.++|+-.+.+ ..+.-..|-.++.
T Consensus 75 l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 75 LFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred hhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 445677888888888899999999999999999888754 3333335655554
No 391
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=52.90 E-value=13 Score=29.20 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=10.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCC
Q 011081 296 RRMREAEKLWEEMRDKNVEHD 316 (494)
Q Consensus 296 g~~~~a~~~~~~m~~~g~~~~ 316 (494)
|.-.+|-.+|..|++.|-+||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 444445555555555554444
No 392
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=52.84 E-value=28 Score=31.71 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=31.6
Q ss_pred cccCHHH-HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHH
Q 011081 243 VRPNVHT-FNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSY 285 (494)
Q Consensus 243 ~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 285 (494)
+.|+..+ ||..|....+.||+++|+.++++.++.|+.--..+|
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3455554 568888888889999999999888888866444444
No 393
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=52.50 E-value=83 Score=22.98 Aligned_cols=54 Identities=24% Similarity=0.137 Sum_probs=27.6
Q ss_pred HhcCCHHHHHHHHHHHHHhCCC--CCC---HHHH--HHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 398 CDKRRVFEALDILKARVVKFGL--FPT---EKSY--MFLIKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 398 ~~~~~~~~a~~~~~~~~~~~~~--~p~---~~~~--~~li~~~~~~g~~~~A~~~~~~m~~ 451 (494)
.+.|++.+|.+.+.+...-... .+. ...+ -.+.......|+.++|.+.+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567777776655543322111 111 1112 2233445566777777777777664
No 394
>PRK14700 recombination factor protein RarA; Provisional
Probab=52.02 E-value=2e+02 Score=26.57 Aligned_cols=62 Identities=18% Similarity=0.152 Sum_probs=31.3
Q ss_pred HHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC-----HHHHHHHHHHHHhCCCC
Q 011081 288 LMAVFCE---ERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGE-----MARAEEFFREMGLSGVE 349 (494)
Q Consensus 288 li~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~~~~ 349 (494)
+|+++.| ..+.|.|+-++..|++.|-.|....-..++-++-..|. ...|...++....-|.+
T Consensus 129 ~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~P 198 (300)
T PRK14700 129 QLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMP 198 (300)
T ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCh
Confidence 4444443 34555666666666666555555555555555555542 22344444444444543
No 395
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=51.90 E-value=14 Score=29.06 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=23.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011081 435 EEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGY 468 (494)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 468 (494)
.-|.-.+|.++|..|++.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 345667788888888888888874 77777653
No 396
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.86 E-value=2.7e+02 Score=28.12 Aligned_cols=43 Identities=12% Similarity=0.112 Sum_probs=23.6
Q ss_pred HHHHHHHHHH-HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 369 DSAILVYNDM-CRKGFEPEGSTIEVLIGELCDKRRVFEALDILKAR 413 (494)
Q Consensus 369 ~~a~~~~~~m-~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 413 (494)
++..+.+... .+.|+..+......++.. ..|++..+...++..
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~~--s~GdlR~aln~Lekl 221 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVARL--ADGAMRDAESLLERL 221 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHH
Confidence 4444444443 345666565555555543 357777777776643
No 397
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=51.67 E-value=2.3e+02 Score=27.34 Aligned_cols=56 Identities=13% Similarity=0.140 Sum_probs=41.3
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCcCHh--HHHHHHHHHH--hcCCHHHHHHHHHHHHhC
Q 011081 255 VGFYREGAFEKVEDVWVEMARLGCEPDCY--SYSVLMAVFC--EERRMREAEKLWEEMRDK 311 (494)
Q Consensus 255 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~--~~g~~~~a~~~~~~m~~~ 311 (494)
..+.+.+++..|.++|+++.+. ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445789999999999999987 555554 4455555554 367788999999987764
No 398
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=51.00 E-value=2.4e+02 Score=30.06 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHH-HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------------CCHHHHHHHHHHHH
Q 011081 368 VDSAILVYNDMC-RKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLF------------PTEKSYMFLIKGLC 434 (494)
Q Consensus 368 ~~~a~~~~~~m~-~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~------------p~~~~~~~li~~~~ 434 (494)
.++..+.++... +.|+..+......+.. ...|++..|+.++++.+...+-. .+...+..++.++
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL- 256 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL- 256 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH-
Confidence 445566666654 3566666666655554 44789999999987655432111 2222334444443
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC
Q 011081 435 EEGKMEEALKVQAEMVGKGFEP 456 (494)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~~~~p 456 (494)
..|+..+++.+++++...|+..
T Consensus 257 ~~~d~~~~l~~~~~l~~~g~~~ 278 (830)
T PRK07003 257 AAGDGPEILAVADEMALRSLSF 278 (830)
T ss_pred HcCCHHHHHHHHHHHHHhCCCH
Confidence 3477888888888887776654
No 399
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=50.98 E-value=2.6e+02 Score=28.18 Aligned_cols=88 Identities=7% Similarity=0.160 Sum_probs=55.0
Q ss_pred HHHHHHHHHHH-HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-----C----------CCCHHHHHHHHH
Q 011081 368 VDSAILVYNDM-CRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFG-----L----------FPTEKSYMFLIK 431 (494)
Q Consensus 368 ~~~a~~~~~~m-~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~----------~p~~~~~~~li~ 431 (494)
.++..+.++.. .+.|+..+......++. ...|.+..|+..+++...-.+ + ..+....-.+++
T Consensus 189 ~~el~~~L~~i~~~egi~ie~eAL~~Ia~--~s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ 266 (507)
T PRK06645 189 FEEIFKLLEYITKQENLKTDIEALRIIAY--KSEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVE 266 (507)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHH
Confidence 44555555544 34677777776666665 356899999999986543221 1 122222334455
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011081 432 GLCEEGKMEEALKVQAEMVGKGFEPSL 458 (494)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~~~~~~p~~ 458 (494)
+.. .|+.++|+.+++++...|..|..
T Consensus 267 ai~-~~d~~~Al~~l~~L~~~g~~~~~ 292 (507)
T PRK06645 267 YII-HRETEKAINLINKLYGSSVNLEI 292 (507)
T ss_pred HHH-cCCHHHHHHHHHHHHHcCCCHHH
Confidence 444 48899999999999988876553
No 400
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=50.87 E-value=1.1e+02 Score=23.23 Aligned_cols=80 Identities=10% Similarity=0.065 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011081 296 RRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVY 375 (494)
Q Consensus 296 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 375 (494)
...++|..+.+.+...+. -...+--+-+..+.+.|++++| +..-.. ...||...|-+|-. .+.|-.+++...+
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~-~~~pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQC-HCYPDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHTT-S--GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhccc-CCCccHHHHHHHHH--HhhccHHHHHHHH
Confidence 455777777777776642 1222333334456677777777 222222 22566666655543 4667777777777
Q ss_pred HHHHHCC
Q 011081 376 NDMCRKG 382 (494)
Q Consensus 376 ~~m~~~~ 382 (494)
.++..+|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 7666555
No 401
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=50.02 E-value=1.6e+02 Score=25.71 Aligned_cols=61 Identities=15% Similarity=0.250 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---ChhhHH--HHHHHHHhcCCHHHHHHHHH
Q 011081 349 ESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEP---EGSTIE--VLIGELCDKRRVFEALDILK 411 (494)
Q Consensus 349 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~--~li~~~~~~~~~~~a~~~~~ 411 (494)
.+...-+|.|+--|.-...+.+|-+.|.. +.|+.| |..++. .-|......|+.++|++...
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in 88 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVN 88 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHH
Confidence 34444455555555444444555554443 233333 222222 23445566666666666655
No 402
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=49.87 E-value=49 Score=33.17 Aligned_cols=92 Identities=12% Similarity=0.021 Sum_probs=60.3
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011081 397 LCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEM 476 (494)
Q Consensus 397 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 476 (494)
+...|+...|...+...+.......++. ...|.+...+.|-..+|..++.+.+... .-.+.++..+.+++....+++.
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~-~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVP-LVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhccc-HHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHH
Confidence 3446777777777776554433332322 2345566666777777877777776543 3345667777788888888888
Q ss_pred HHHHHHHHHHcccc
Q 011081 477 ATMLRKEMFENQVR 490 (494)
Q Consensus 477 a~~~~~~m~~~~~~ 490 (494)
|++.|++..+..++
T Consensus 695 a~~~~~~a~~~~~~ 708 (886)
T KOG4507|consen 695 ALEAFRQALKLTTK 708 (886)
T ss_pred HHHHHHHHHhcCCC
Confidence 88888888776554
No 403
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=49.77 E-value=1.2e+02 Score=24.13 Aligned_cols=64 Identities=11% Similarity=0.068 Sum_probs=44.3
Q ss_pred HHHHHHhcCChhcHHHHHHHHHHHHhCCCC-cChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCc
Q 011081 164 LIKCCLEVKNIEKIETCVDIVRMLMSRGLS-VKVSTCNALIWEVSRGKGVISGYEIYREVFGLDS 227 (494)
Q Consensus 164 li~~~~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 227 (494)
+-.++.+..+.+.+++.+.+++.+.+...+ -......-|.-++.+.++++.++++.+.+++..+
T Consensus 38 lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 38 LAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred HHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence 344555555656699999999999873322 2223333455578899999999999999877544
No 404
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=49.47 E-value=3.2e+02 Score=28.36 Aligned_cols=158 Identities=8% Similarity=0.086 Sum_probs=92.7
Q ss_pred hcCChhcHHHHHHHHHHHHhCCCCcChH-----hHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccc
Q 011081 170 EVKNIEKIETCVDIVRMLMSRGLSVKVS-----TCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVR 244 (494)
Q Consensus 170 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (494)
...+ +++|...+.+.....-.++.. ....++..+.+.+... |....++..+.... .+..
T Consensus 72 eT~n---~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~------------~~~~ 135 (608)
T PF10345_consen 72 ETEN---LDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET------------YGHS 135 (608)
T ss_pred HcCC---HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc------------cCch
Confidence 4556 888988888775433222221 2234556666666555 88888877543211 1223
Q ss_pred cCHHHHHHH-HHHHHhcCCHhHHHHHHHHHHHcC---CCcCHhHHHHHHHHHH--hcCCHHHHHHHHHHHHhCC------
Q 011081 245 PNVHTFNAL-MVGFYREGAFEKVEDVWVEMARLG---CEPDCYSYSVLMAVFC--EERRMREAEKLWEEMRDKN------ 312 (494)
Q Consensus 245 p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g------ 312 (494)
+-...+..+ +..+...+++..|.+.++.+...- ..|-..++..++.+.. +.+..+++.+..+.+....
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~ 215 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLD 215 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccC
Confidence 334444444 344444489999999998876542 2344445555555544 3465677777777663321
Q ss_pred ---CCCCHhHHHHHHHHHH--ccCCHHHHHHHHHHH
Q 011081 313 ---VEHDVVAYNTIIGGFC--EIGEMARAEEFFREM 343 (494)
Q Consensus 313 ---~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m 343 (494)
-.|...+|..+++.++ ..|+++.+...++++
T Consensus 216 ~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 216 PSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1345677877777654 567776776665554
No 405
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=49.33 E-value=54 Score=22.17 Aligned_cols=50 Identities=12% Similarity=-0.027 Sum_probs=31.7
Q ss_pred ccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHh
Q 011081 244 RPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCE 294 (494)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 294 (494)
.|....++.++..+++-.-.++++..+.+..+.|. .+..+|.--++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 45566677777777777777777777777777763 455566555555554
No 406
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=49.15 E-value=35 Score=31.15 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=25.9
Q ss_pred CCcCHhH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011081 278 CEPDCYS-YSVLMAVFCEERRMREAEKLWEEMRDKNVE 314 (494)
Q Consensus 278 ~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 314 (494)
+.||..+ |+..|....+.||+++|++++++..+.|+.
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 3455544 457777777888888888888887777754
No 407
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=48.83 E-value=1.7e+02 Score=24.93 Aligned_cols=77 Identities=8% Similarity=0.069 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHH-
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMV- 255 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~- 255 (494)
-++++++-+++.+ +....-.....|++++|.+-++++.+.- ..++.-...|..+..
T Consensus 19 REE~l~lsRei~r---------~s~~aI~~~H~~~~eeA~~~l~~a~~~v--------------~~Lk~~l~~~pel~~a 75 (204)
T COG2178 19 REEALKLSREIVR---------LSGEAIFLLHRGDFEEAEKKLKKASEAV--------------EKLKRLLAGFPELYFA 75 (204)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHhccHHHHHHHHHHHHHHH--------------HHHHHHHhhhHHHHHH
Confidence 4566666666544 2233334455678888888887774321 112223445666655
Q ss_pred HHHhcCC--HhHHHHHHHHHHHc
Q 011081 256 GFYREGA--FEKVEDVWVEMARL 276 (494)
Q Consensus 256 ~~~~~g~--~~~a~~~~~~m~~~ 276 (494)
+++..+. +-+|.-++..+...
T Consensus 76 g~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 76 GFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HhhcchHHHHHHHHHHHHHHhcC
Confidence 5666653 55666677666554
No 408
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=48.79 E-value=1.3e+02 Score=30.84 Aligned_cols=77 Identities=10% Similarity=0.200 Sum_probs=54.1
Q ss_pred HHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHh------HHHHHHHHHH
Q 011081 201 ALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFE------KVEDVWVEMA 274 (494)
Q Consensus 201 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~------~a~~~~~~m~ 274 (494)
+|+.+|...|++..+.++++.+...+.. -+.-...+|..|+.+.+.|.++ .|.+++++..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~--------------~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ 98 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKG--------------DKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR 98 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcC--------------CeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh
Confidence 7888999999999999999988765432 2334567888899999999764 2334444333
Q ss_pred HcCCCcCHhHHHHHHHHHHh
Q 011081 275 RLGCEPDCYSYSVLMAVFCE 294 (494)
Q Consensus 275 ~~g~~p~~~~~~~li~~~~~ 294 (494)
+.-|.-||..|+++-..
T Consensus 99 ---ln~d~~t~all~~~sln 115 (1117)
T COG5108 99 ---LNGDSLTYALLCQASLN 115 (1117)
T ss_pred ---cCCcchHHHHHHHhhcC
Confidence 45577888777766443
No 409
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=48.72 E-value=1.6e+02 Score=24.64 Aligned_cols=75 Identities=16% Similarity=0.170 Sum_probs=31.9
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHH
Q 011081 372 ILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEG-KMEEALKVQAE 448 (494)
Q Consensus 372 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~ 448 (494)
..+..++.+.|+ +..+....+..++.....+.|.+.+.......+..++..-..-+...+.+.| .++.+..++..
T Consensus 88 ~rl~qeL~qkGi--~~~~Ie~aL~~~~~~~~~~~a~~~~~kk~~~~~~~~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~ 163 (174)
T COG2137 88 ARLKQELKQKGI--DDEIIEEALELIDEEDEQERARKVLRKKFKRENKPPDKKEKAKIQRFLLRRGFSYEVIKEALNE 163 (174)
T ss_pred HHHHHHHHHcCC--CHHHHHHHHhccchHHHHHHHHHHHHHHhCccccCcchhHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 344455555553 3334444444444444455555555443333333344333333333333333 23333333333
No 410
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=48.71 E-value=34 Score=23.12 Aligned_cols=30 Identities=10% Similarity=-0.007 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 011081 318 VAYNTIIGGFCEIGEMARAEEFFREMGLSG 347 (494)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 347 (494)
..++.++..+++..-.++++..+.+..+.|
T Consensus 9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 9 PLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334444444444444444444444444444
No 411
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.49 E-value=1.2e+02 Score=23.04 Aligned_cols=26 Identities=15% Similarity=0.319 Sum_probs=14.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 011081 320 YNTIIGGFCEIGEMARAEEFFREMGL 345 (494)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (494)
|..|+..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 45555555555555555555555544
No 412
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=48.28 E-value=3.4e+02 Score=28.22 Aligned_cols=50 Identities=14% Similarity=0.319 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHH
Q 011081 285 YSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAE 337 (494)
Q Consensus 285 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 337 (494)
|..|+... +.=+.++-.++++++...- .....++.++++....|-.+.+.
T Consensus 349 f~~Lv~~l-r~l~~~~L~~l~~~~~~~~--~~~~~r~~~lDal~~aGT~~av~ 398 (618)
T PF01347_consen 349 FSRLVRLL-RTLSYEDLEELYKQLKSKS--KKEQARKIFLDALPQAGTNPAVK 398 (618)
T ss_dssp HHHHHHHH-TTS-HHHHHHHHHHHTTS-----HHHHHHHHHHHHHH-SHHHHH
T ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHcCCHHHHH
Confidence 44444333 3334555555555554321 24556666666666666544333
No 413
>PRK13342 recombination factor protein RarA; Reviewed
Probab=48.17 E-value=2.7e+02 Score=27.15 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=33.6
Q ss_pred HHHHHHHHc---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCC
Q 011081 321 NTIIGGFCE---IGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGD-----VDSAILVYNDMCRKGF 383 (494)
Q Consensus 321 ~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~~~ 383 (494)
..++.++.+ .++.+.|+..+..|.+.|..|....-..++.++-..|. ..-|...++....-|.
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~ 301 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGM 301 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCC
Confidence 334444443 36677777777777777766665555555555444442 2233444444444554
No 414
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=47.79 E-value=3.3e+02 Score=27.99 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011081 435 EEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDG 467 (494)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 467 (494)
+.|++.+|.+.+-.+.+.++.|...-..-|.++
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp ---------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 347778887777777777777766555444443
No 415
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=46.49 E-value=1e+02 Score=24.81 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=21.5
Q ss_pred HHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhH
Q 011081 271 VEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVA 319 (494)
Q Consensus 271 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 319 (494)
..+.+.|++++. --..++..+...++.-.|.++|+++.+.+...+..|
T Consensus 10 ~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 10 ERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 334444444332 123344444444444555555555555544433333
No 416
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.24 E-value=3.3e+02 Score=27.54 Aligned_cols=87 Identities=14% Similarity=0.103 Sum_probs=52.5
Q ss_pred HHHHHHHHH-HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------------CCHHHHHHHHHHHHh
Q 011081 369 DSAILVYND-MCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLF------------PTEKSYMFLIKGLCE 435 (494)
Q Consensus 369 ~~a~~~~~~-m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~------------p~~~~~~~li~~~~~ 435 (494)
++..+.+.. +.+.|+..+......++.. ..|+...|+.++++.+...+-. ++......++.++.
T Consensus 181 ~~i~~~l~~il~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~- 257 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA- 257 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-
Confidence 333444443 3456777676666666544 3689999999987554321111 12222334445444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH
Q 011081 436 EGKMEEALKVQAEMVGKGFEPSL 458 (494)
Q Consensus 436 ~g~~~~A~~~~~~m~~~~~~p~~ 458 (494)
.|+.+.+++++++|.+.|..|..
T Consensus 258 ~~d~~~~l~~~~~l~~~g~~~~~ 280 (509)
T PRK14958 258 AKAGDRLLGCVTRLVEQGVDFSN 280 (509)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHH
Confidence 47888888888888888877654
No 417
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=46.10 E-value=3.5e+02 Score=27.80 Aligned_cols=59 Identities=12% Similarity=0.182 Sum_probs=30.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011081 282 CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGL 345 (494)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (494)
...|..|+..+.. =+.+.-.++++++... . ...+..++++....|-.....-+.+.+..
T Consensus 310 ~~~f~~lv~~lR~-~~~e~l~~l~~~~~~~--~--~~~r~~~~Dal~~~GT~~a~~~i~~~i~~ 368 (574)
T smart00638 310 AAKFLRLVRLLRT-LSEEQLEQLWRQLYEK--K--KKARRIFLDAVAQAGTPPALKFIKQWIKN 368 (574)
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHHHHHHhC--C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 3345555554433 3445555566655431 1 45666667777766665444444443333
No 418
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=45.81 E-value=3.7e+02 Score=27.95 Aligned_cols=193 Identities=13% Similarity=0.062 Sum_probs=97.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCC-CC-----CHhHHHHHH--HHHHccCCHHHHHHHHH--------HHHhCCCCCCHHHHH
Q 011081 293 CEERRMREAEKLWEEMRDKNV-EH-----DVVAYNTII--GGFCEIGEMARAEEFFR--------EMGLSGVESSSVTFE 356 (494)
Q Consensus 293 ~~~g~~~~a~~~~~~m~~~g~-~~-----~~~~~~~li--~~~~~~g~~~~A~~~~~--------~m~~~~~~~~~~~~~ 356 (494)
+-.+++..|....+.|.+..- .| ....+..++ -.+-..|+.+.|+..|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 346889999999998875421 11 122333333 33445799999999998 444445444444443
Q ss_pred HH----HHHHHhcCCHHH--HHHHHHHHHHC---CCCCChhhHHHH-HHHHHhcC--CHHHHHHHHHHHHHhC-CCCCCH
Q 011081 357 HL----VNGYCRAGDVDS--AILVYNDMCRK---GFEPEGSTIEVL-IGELCDKR--RVFEALDILKARVVKF-GLFPTE 423 (494)
Q Consensus 357 ~l----i~~~~~~g~~~~--a~~~~~~m~~~---~~~p~~~~~~~l-i~~~~~~~--~~~~a~~~~~~~~~~~-~~~p~~ 423 (494)
.+ |.-+......++ +.++++.+... ....+..++..+ +.++.... ...++...+.+.++.. .-..+.
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 32 222222223333 66777766442 111233333333 33332221 2235555555555443 111222
Q ss_pred H----HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC--CHHHHHHH-----HHHHHhcCCHHHHHHHHHHHHH
Q 011081 424 K----SYMFLIKGLCEEGKMEEALKVQAEMVGK-GFEP--SLEIYSAF-----IDGYMKEGNVEMATMLRKEMFE 486 (494)
Q Consensus 424 ~----~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p--~~~~~~~l-----i~~~~~~g~~~~a~~~~~~m~~ 486 (494)
. +++.|-..+. .|+..+..+........ .-.| ....|..+ .+.+...|+.++|.....+...
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 2 2232222333 67777766555443322 1122 34556333 3347778999999998877653
No 419
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=45.19 E-value=2e+02 Score=29.65 Aligned_cols=87 Identities=10% Similarity=0.137 Sum_probs=56.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCChhhHHHH
Q 011081 322 TIIGGFCEIGEMARAEEFFREMGLS--GVESSSVTFEHLVNGYCRAGDVD------SAILVYNDMCRKGFEPEGSTIEVL 393 (494)
Q Consensus 322 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~------~a~~~~~~m~~~~~~p~~~~~~~l 393 (494)
+|..+|..+|++-.+..+++..... |-+.=...||..|+...+.|.++ .|.++++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7888999999999998888887653 33344567788888888888764 2334444333 44477788877
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 011081 394 IGELCDKRRVFEALDILK 411 (494)
Q Consensus 394 i~~~~~~~~~~~a~~~~~ 411 (494)
+.+-.+.-.-....-++.
T Consensus 110 ~~~sln~t~~~l~~pvl~ 127 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLH 127 (1117)
T ss_pred HHhhcChHhHHhccHHHH
Confidence 776554333333334444
No 420
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=45.09 E-value=1.2e+02 Score=22.13 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=10.3
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 011081 361 GYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 361 ~~~~~g~~~~a~~~~~~m~~ 380 (494)
.....|+.++|.+.+++.++
T Consensus 50 ~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 34445555555555555443
No 421
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=44.55 E-value=2e+02 Score=24.53 Aligned_cols=55 Identities=13% Similarity=0.150 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC--------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011081 428 FLIKGLCEEGKMEEALKVQAEMVGKG--------------FEPSLEIYSAFIDGYMKEGNVEMATMLRK 482 (494)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~~~--------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 482 (494)
+++..|-+.-++.++.++++.|.+.. ..+.-..-|.-...+.+.|..+.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 44555666667777777777765421 12334455666667777888888877766
No 422
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=43.36 E-value=1.4e+02 Score=26.66 Aligned_cols=21 Identities=10% Similarity=0.368 Sum_probs=11.3
Q ss_pred HHHHHHccCCHHHHHHHHHHH
Q 011081 323 IIGGFCEIGEMARAEEFFREM 343 (494)
Q Consensus 323 li~~~~~~g~~~~A~~~~~~m 343 (494)
+..-|.+.|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 444455555555555555554
No 423
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=43.29 E-value=2.8e+02 Score=25.88 Aligned_cols=97 Identities=21% Similarity=0.160 Sum_probs=63.6
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCh----
Q 011081 317 VVAYNTIIGGFCEIGEMARAEEFFREMGLS----GVESSSVTFEHLVN-GYCRAGDVDSAILVYNDMCRKGFEPEG---- 387 (494)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~p~~---- 387 (494)
...+-....-||+.|+.+.|++.+++..+. |.+.|++.+.+-+. .|..+.-+.+-++..+.+.+.|...+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 445667778899999999999888776543 77778776655443 334444456666777777777764432
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 388 STIEVLIGELCDKRRVFEALDILKARVV 415 (494)
Q Consensus 388 ~~~~~li~~~~~~~~~~~a~~~~~~~~~ 415 (494)
.+|..+- +....++.+|-.+|-+.+.
T Consensus 184 KvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 184 KVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 2333332 3345788888888876554
No 424
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=42.96 E-value=1.5e+02 Score=22.53 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 284 SYSVLMAVFCEERRMREAEKLWEEMRD 310 (494)
Q Consensus 284 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 310 (494)
-|..|+..|...|..++|.+++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 578888888888999999998888876
No 425
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=42.76 E-value=2.3e+02 Score=24.81 Aligned_cols=101 Identities=14% Similarity=0.133 Sum_probs=50.5
Q ss_pred CCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHH--HHHHHHHHhcCCHhHHHHH
Q 011081 192 LSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTF--NALMVGFYREGAFEKVEDV 269 (494)
Q Consensus 192 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~li~~~~~~g~~~~a~~~ 269 (494)
+.+...-+|.|+--|.-...+.+|-+.|..-....+. ..|..++ ..-|....+.|+.++|++.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~---------------~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~ 86 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPP---------------SIDLDSMDERLQIRRAIEEGQIEEAIEK 86 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCc---------------cCchhhHhHHHHHHHHHHhccHHHHHHH
Confidence 3445555666666555555555555555444222210 1233333 3445666778888888887
Q ss_pred HHHHHHcCCCcCHhHHHHHHH----HHHhcCCHHHHHHHHHH
Q 011081 270 WVEMARLGCEPDCYSYSVLMA----VFCEERRMREAEKLWEE 307 (494)
Q Consensus 270 ~~~m~~~g~~p~~~~~~~li~----~~~~~g~~~~a~~~~~~ 307 (494)
.+++...-+.-|...+-.|.. -..+.|..++|++..+.
T Consensus 87 in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 87 VNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 777654333333323222221 13344555555555443
No 426
>PRK10941 hypothetical protein; Provisional
Probab=42.59 E-value=2.6e+02 Score=25.37 Aligned_cols=23 Identities=9% Similarity=0.127 Sum_probs=10.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 011081 358 LVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 358 li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
+-.+|.+.++++.|+++.+.+..
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~ 209 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQ 209 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHH
Confidence 33344444444444444444444
No 427
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.50 E-value=3.1e+02 Score=26.07 Aligned_cols=208 Identities=8% Similarity=0.052 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHh----C--CCCCCH
Q 011081 248 HTFNALMVGFYREGAFEKVEDVWVEMARLGCEPD----CYSYSVLMAVFCEERRMREAEKLWEEMRD----K--NVEHDV 317 (494)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~--g~~~~~ 317 (494)
.+++.+-.++.+.+.....+++..+..+.- .|. ......++..+.+.+++..+...++.-.. . ...|..
T Consensus 103 ~lc~~l~~~~~~~~~p~~gi~ii~~av~k~-~~~~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~ 181 (422)
T KOG2582|consen 103 PLCHDLTEAVVKKNKPLRGIRIIMQAVDKM-QPSNGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKY 181 (422)
T ss_pred HHHHHHHHHHHhcCCccccchHHHHHHHHh-ccCccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHH
Confidence 445666666776666665555554444321 111 12233455566667776655555432211 1 112221
Q ss_pred hHHHHHHH--HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--------hcCCH--------HHHHHHHHHHH
Q 011081 318 VAYNTIIG--GFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYC--------RAGDV--------DSAILVYNDMC 379 (494)
Q Consensus 318 ~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~--------~~g~~--------~~a~~~~~~m~ 379 (494)
.....+-. .|...++++.|+.+|..... .|....-...+.+|- -.|+. ..|...+
T Consensus 182 fL~Y~yYgg~iciglk~fe~Al~~~e~~v~---~Pa~~vs~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~---- 254 (422)
T KOG2582|consen 182 FLLYLYYGGMICIGLKRFERALYLLEICVT---TPAMAVSHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFF---- 254 (422)
T ss_pred HHHHHHhcceeeeccccHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhc----
Confidence 11111111 13356789999988887764 343333333334432 23332 1111111
Q ss_pred HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHhCCCC
Q 011081 380 RKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLI----KGLCEEGKMEEALKVQAEMVGKGFE 455 (494)
Q Consensus 380 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~~~~ 455 (494)
+|-..-|.-+.++|.+...-+ ..+++ ..+.+-++..-|......+.++.+.
T Consensus 255 ----K~ms~pY~ef~~~Y~~~~~~e---------------------Lr~lVk~~~~rF~kDnnt~l~k~av~sl~k~nI~ 309 (422)
T KOG2582|consen 255 ----KPMSNPYHEFLNVYLKDSSTE---------------------LRTLVKKHSERFTKDNNTGLAKQAVSSLYKKNIQ 309 (422)
T ss_pred ----ccCCchHHHHHHHHhcCCcHH---------------------HHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHH
Confidence 222223444555444332221 11222 2345667777777777777776666
Q ss_pred CCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHcc
Q 011081 456 PSLEIYSAFID----GYMKEGNVEMATMLRKEMFENQ 488 (494)
Q Consensus 456 p~~~~~~~li~----~~~~~g~~~~a~~~~~~m~~~~ 488 (494)
.-..||.+|-- -....+..++|.+..-+|++.|
T Consensus 310 rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 310 RLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 56667766532 2335577788888877777765
No 428
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=42.35 E-value=1.5e+02 Score=22.39 Aligned_cols=24 Identities=8% Similarity=0.410 Sum_probs=17.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHH
Q 011081 251 NALMVGFYREGAFEKVEDVWVEMA 274 (494)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~~m~ 274 (494)
..++..|...|+.++|...+.++.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 455667777888888888887763
No 429
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.38 E-value=4.2e+02 Score=27.80 Aligned_cols=87 Identities=10% Similarity=0.055 Sum_probs=52.1
Q ss_pred HHHHHHHHHHH-HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------------CCHHHHHHHHHHHH
Q 011081 368 VDSAILVYNDM-CRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLF------------PTEKSYMFLIKGLC 434 (494)
Q Consensus 368 ~~~a~~~~~~m-~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~------------p~~~~~~~li~~~~ 434 (494)
.++..+.+... .+.|+..+......++.. ..|++..|+.++++.+...+-. .+....-.++.+..
T Consensus 179 ~eEI~k~L~~Il~kEgI~id~eAL~~IA~~--S~GdLRdALnLLDQaIayg~g~IT~edV~~lLG~~d~e~IfdLldAI~ 256 (702)
T PRK14960 179 VDEITKHLGAILEKEQIAADQDAIWQIAES--AQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLGLIDRTIIYDLILAVH 256 (702)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhccCCHHHHHHHHHHHH
Confidence 34555555544 346777777766666543 4789999999887555432111 12223334555544
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC
Q 011081 435 EEGKMEEALKVQAEMVGKGFEPS 457 (494)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~~~~p~ 457 (494)
+ ++...++++++++.+.|..++
T Consensus 257 k-~d~~~al~~L~el~~~g~d~~ 278 (702)
T PRK14960 257 Q-NQREKVSQLLLQFRYQALDVS 278 (702)
T ss_pred h-cCHHHHHHHHHHHHHhCCCHH
Confidence 4 677888888888887766544
No 430
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=41.01 E-value=2.6e+02 Score=24.86 Aligned_cols=112 Identities=12% Similarity=0.024 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhCCCCcChH-hHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHH-HHHHHH
Q 011081 177 IETCVDIVRMLMSRGLSVKVS-TCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVH-TFNALM 254 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~li 254 (494)
+..|+..|.+.+. +.|++. -|+.-+-++.+..+++.+.+--...++. .||.+ ....+.
T Consensus 26 y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql------------------~~N~vk~h~flg 85 (284)
T KOG4642|consen 26 YDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL------------------DPNLVKAHYFLG 85 (284)
T ss_pred hchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc------------------ChHHHHHHHHHH
Confidence 6677775555554 456663 3555566677777777776665555543 34433 344455
Q ss_pred HHHHhcCCHhHHHHHHHHHHH----cCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 255 VGFYREGAFEKVEDVWVEMAR----LGCEPDCYSYSVLMAVFCEERRMREAEKLWEEM 308 (494)
Q Consensus 255 ~~~~~~g~~~~a~~~~~~m~~----~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 308 (494)
.+..+...+++|+..+.+... ..+.+-......|..+--+.=...+..++.++.
T Consensus 86 ~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 86 QWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 566677788888888877633 334455556666666554444445555555543
No 431
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=40.68 E-value=2.4e+02 Score=24.43 Aligned_cols=37 Identities=24% Similarity=0.620 Sum_probs=20.7
Q ss_pred CCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCC
Q 011081 137 NDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKN 173 (494)
Q Consensus 137 ~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~ 173 (494)
...+..+++.+++.|.+.+.....|+..|.+|.....
T Consensus 155 y~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~ 191 (221)
T KOG0037|consen 155 YRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQR 191 (221)
T ss_pred cCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHH
Confidence 4445556666666665554445556666666665443
No 432
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=40.65 E-value=57 Score=28.54 Aligned_cols=60 Identities=17% Similarity=0.130 Sum_probs=38.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccccccC
Q 011081 433 LCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVRQED 493 (494)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~pd~ 493 (494)
..+.|+.+.|.+++.+..+. .+-+...|-.+.....+.|+++.|.+.+++..+.++....
T Consensus 5 ~~~~~D~~aaaely~qal~l-ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 5 LAESGDAEAAAELYNQALEL-APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hcccCChHHHHHHHHHHhhc-CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34566777777777777643 1224566666666667777777777777777776655443
No 433
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=40.52 E-value=60 Score=17.32 Aligned_cols=29 Identities=28% Similarity=0.543 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011081 437 GKMEEALKVQAEMVGKGFEPSLEIYSAFID 466 (494)
Q Consensus 437 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 466 (494)
|+.+.|..+|++++.. .+-+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~-~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEK-FPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHH-CCCChHHHHHHHH
Confidence 4567777777777754 2335556655544
No 434
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=40.15 E-value=1.8e+02 Score=23.47 Aligned_cols=60 Identities=13% Similarity=0.049 Sum_probs=29.8
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 011081 341 REMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKR 401 (494)
Q Consensus 341 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 401 (494)
+.+.+.|++++.. -..++..+...++.-.|.++|+.+.+.+...+..|....+..+...|
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3444445444322 23344555555555666666666666555444444444444444444
No 435
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=40.06 E-value=2.2e+02 Score=26.34 Aligned_cols=45 Identities=7% Similarity=0.061 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhc
Q 011081 180 CVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFG 224 (494)
Q Consensus 180 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 224 (494)
-.++++.|.+.++.|.-+++.-+.-.+...=.+.+...+++.++.
T Consensus 262 D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 262 DEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred hHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 367888899999999999988888788888888999999999865
No 436
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=38.68 E-value=1.8e+02 Score=24.21 Aligned_cols=61 Identities=10% Similarity=0.077 Sum_probs=31.0
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 011081 378 MCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKME 440 (494)
Q Consensus 378 m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 440 (494)
+.+.|++.+..-. .++..+...++.-.|.++++ .+.+.+...+..|.-.-+..+.+.|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~-~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLD-LLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHH-HHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 3445655443332 34444444455556666666 4555554455555444555666666443
No 437
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=38.11 E-value=1.7e+02 Score=21.99 Aligned_cols=60 Identities=8% Similarity=0.034 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC--CHHHHHHHHHHHHhCC
Q 011081 286 SVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIG--EMARAEEFFREMGLSG 347 (494)
Q Consensus 286 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~ 347 (494)
..++..|...|+.++|..-+.++.... -.......++......+ .-+.+..++..+...+
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~ 67 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRK 67 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcC
Confidence 446667777788888888777753221 12223333444433332 2234455555565554
No 438
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=38.01 E-value=3.4e+02 Score=25.36 Aligned_cols=133 Identities=13% Similarity=0.104 Sum_probs=69.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCCCH
Q 011081 348 VESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK-GFEPEGSTIEVLIGELCDKRRVFEALDILKARVVK---FGLFPTE 423 (494)
Q Consensus 348 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~p~~ 423 (494)
++.|...++.|..+ +...+++-.+..++..+. |-.--...+......||+.|+.+.|++.+...+.+ .|.+.|.
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 34455555555443 222233444444444332 21112344556667788889988888888765543 3556666
Q ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 424 KSYMFLIKG-LCEEGKMEEALKVQAEMVGKGFEPS----LEIYSAFIDGYMKEGNVEMATMLRKEM 484 (494)
Q Consensus 424 ~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m 484 (494)
..+..-+.. |....-+.+-++..+.+.+.|-.-+ ..+|..+-. ....++.+|-.+|-+.
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~--msvR~Fk~Aa~Lfld~ 207 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYC--MSVRNFKEAADLFLDS 207 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHH--HHHHhHHHHHHHHHHH
Confidence 555433322 3333334555666666666665433 234443322 2335777777776554
No 439
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=37.83 E-value=2.5e+02 Score=23.76 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=10.0
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 011081 432 GLCEEGKMEEALKVQAEMV 450 (494)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~ 450 (494)
.|.+.|.+++|.+++++..
T Consensus 120 VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHhcCchHHHHHHHHHHh
Confidence 4455555555555555554
No 440
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=37.51 E-value=5.8e+02 Score=27.86 Aligned_cols=53 Identities=15% Similarity=0.130 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCH
Q 011081 422 TEKSYMFLIKGLCEEGKMEEALKVQAEMVGK-GFEPSLEIYSAFIDGYMKEGNV 474 (494)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~ 474 (494)
|..++..-..-+...|++..|.+++.++.+. |-.++...|..++..+...|--
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~ 1283 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN 1283 (1304)
T ss_pred CchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch
Confidence 4444444444555667777777777776653 4456666666666666666643
No 441
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=37.43 E-value=1.1e+02 Score=19.62 Aligned_cols=24 Identities=13% Similarity=-0.195 Sum_probs=12.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHh
Q 011081 393 LIGELCDKRRVFEALDILKARVVK 416 (494)
Q Consensus 393 li~~~~~~~~~~~a~~~~~~~~~~ 416 (494)
+.-++.+.|++++|.+..+..++.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh
Confidence 334455566666666665544443
No 442
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.38 E-value=2.7e+02 Score=23.91 Aligned_cols=88 Identities=10% Similarity=0.051 Sum_probs=45.7
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHH-----HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc
Q 011081 255 VGFYREGAFEKVEDVWVEMARLGCEPDCYSYSV-----LMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCE 329 (494)
Q Consensus 255 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-----li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 329 (494)
..+...|++++|+.-++..... |....+.. |.......|.+|+|+.+++.....+. .......-.+.+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 4555666666666666655532 12222222 33345556666666666665554421 11112223355666
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 011081 330 IGEMARAEEFFREMGLSG 347 (494)
Q Consensus 330 ~g~~~~A~~~~~~m~~~~ 347 (494)
.|+-++|..-|++..+.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 666666666666666553
No 443
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=37.36 E-value=5e+02 Score=27.06 Aligned_cols=63 Identities=11% Similarity=0.109 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCC-------HHHHHHHHHHHHhC
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERR-------MREAEKLWEEMRDK 311 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~ 311 (494)
...| ++|--|.+.|++++|.++..+..+. .......+...+..|....+ -+....-|+...+.
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 3444 4567788999999999999665543 35556677888888876532 23455556665554
No 444
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=37.18 E-value=2e+02 Score=22.50 Aligned_cols=74 Identities=9% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 011081 403 VFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS-LEIYSAFIDGYMKEGNVEMATMLR 481 (494)
Q Consensus 403 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~ 481 (494)
++++.+.|...-.-.+-..=...|-..++.+ ++..++|..|..+|+.-. ..-|......+-..|++.+|.+++
T Consensus 49 Lerc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy 122 (125)
T smart00777 49 LERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVY 122 (125)
T ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Q ss_pred H
Q 011081 482 K 482 (494)
Q Consensus 482 ~ 482 (494)
+
T Consensus 123 ~ 123 (125)
T smart00777 123 Q 123 (125)
T ss_pred H
No 445
>COG5210 GTPase-activating protein [General function prediction only]
Probab=36.87 E-value=4.3e+02 Score=26.64 Aligned_cols=53 Identities=13% Similarity=0.167 Sum_probs=40.5
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 011081 337 EEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGST 389 (494)
Q Consensus 337 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 389 (494)
-+++..+...|+.....++..++..+.+.-..+.++.+++.+.-.|+.-....
T Consensus 362 p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~ 414 (496)
T COG5210 362 PELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQL 414 (496)
T ss_pred HHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHH
Confidence 45677778888888888888888888888888888888888877775433333
No 446
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=36.74 E-value=2.9e+02 Score=24.10 Aligned_cols=21 Identities=14% Similarity=0.042 Sum_probs=11.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 011081 467 GYMKEGNVEMATMLRKEMFEN 487 (494)
Q Consensus 467 ~~~~~g~~~~a~~~~~~m~~~ 487 (494)
...+.|+.++|.+.|.+++..
T Consensus 174 L~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 174 LNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHhCCHHHHHHHHHHHHcC
Confidence 344455555555555555543
No 447
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.65 E-value=4e+02 Score=25.77 Aligned_cols=161 Identities=11% Similarity=0.025 Sum_probs=88.7
Q ss_pred HhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 011081 197 STCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARL 276 (494)
Q Consensus 197 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 276 (494)
..+.-+...|..+|+++.|.+.|.+..+-... .+-.+..|-.+|..-...|+|..+..+..+....
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs--------------~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTS--------------AKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc--------------hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 45777888999999999999999886432111 1224556777777778888888888777776553
Q ss_pred ---------CCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-----CCC-CHhHHHHHHHHHHccCCHHHHHH--
Q 011081 277 ---------GCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK-N-----VEH-DVVAYNTIIGGFCEIGEMARAEE-- 338 (494)
Q Consensus 277 ---------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g-----~~~-~~~~~~~li~~~~~~g~~~~A~~-- 338 (494)
.+.+-...+..|...+.+ +++.|.+.|-..... . +.| |+.+| ..+.+++--++-+--..
T Consensus 217 ~~~~~~~~q~v~~kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iY-ggLcALAtfdr~~Lk~~vi 293 (466)
T KOG0686|consen 217 PDANENLAQEVPAKLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIY-GGLCALATFDRQDLKLNVI 293 (466)
T ss_pred chhhhhHHHhcCcchHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHH-HhhHhhccCCHHHHHHHHH
Confidence 123333344444444433 666666655433211 1 223 33334 33333333333222111
Q ss_pred ---HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 339 ---FFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 339 ---~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
.|+...+ ..+..+..+..-| .+++...+++++++..
T Consensus 294 ~n~~Fk~fle----l~Pqlr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 294 KNESFKLFLE----LEPQLREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred cchhhhhHHh----cChHHHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 2222222 2233444444444 3567888888888754
No 448
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=36.56 E-value=5.1e+02 Score=26.89 Aligned_cols=86 Identities=19% Similarity=0.290 Sum_probs=52.5
Q ss_pred HHHHHHHHHHH-HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------------CCCCCHHHHHHHHHHH
Q 011081 368 VDSAILVYNDM-CRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKF-------------GLFPTEKSYMFLIKGL 433 (494)
Q Consensus 368 ~~~a~~~~~~m-~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-------------~~~p~~~~~~~li~~~ 433 (494)
.++....+... .+.|+..+......++.. ..|++..+...+++.+... +....... -.++.+.
T Consensus 193 ~~el~~~L~~i~~kegi~i~~eAl~lIa~~--a~Gdlr~al~~Ldkli~~g~g~It~e~V~~llg~~~~~~i-f~L~~ai 269 (598)
T PRK09111 193 ADVLAAHLSRIAAKEGVEVEDEALALIARA--AEGSVRDGLSLLDQAIAHGAGEVTAEAVRDMLGLADRARV-IDLFEAL 269 (598)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHhhcCCCcCHHHHHHHhCCCCHHHH-HHHHHHH
Confidence 34445555543 346777676666666653 3689999999987654321 12122222 2444433
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC
Q 011081 434 CEEGKMEEALKVQAEMVGKGFEPS 457 (494)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~~~~p~ 457 (494)
..|+.+.|+.++..+...|..|-
T Consensus 270 -~~gd~~~Al~~l~~l~~~G~~p~ 292 (598)
T PRK09111 270 -MRGDVAAALAEFRAQYDAGADPV 292 (598)
T ss_pred -HcCCHHHHHHHHHHHHHcCCCHH
Confidence 45789999999999988776664
No 449
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=36.43 E-value=2.3e+02 Score=28.73 Aligned_cols=73 Identities=7% Similarity=0.018 Sum_probs=39.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011081 252 ALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG 326 (494)
Q Consensus 252 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 326 (494)
.|.+...+.|...+|-.++.+..... ....-++..+.++|.-..++++|++.|....+.. +.+.+.-+.|...
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHH
Confidence 34444445555566666666555443 2334455566666666666666666666655543 2234444444433
No 450
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=35.47 E-value=1.7e+02 Score=22.38 Aligned_cols=39 Identities=26% Similarity=0.126 Sum_probs=26.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011081 429 LIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGY 468 (494)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 468 (494)
+|+-+.++...++|+++++.|.+.| ..+...-+.|-..+
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L 105 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSIL 105 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4555667788889999999988887 44555444444433
No 451
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=35.15 E-value=1.4e+02 Score=19.95 Aligned_cols=46 Identities=20% Similarity=0.223 Sum_probs=21.6
Q ss_pred hcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHH-----HhcCCHHHHHHH
Q 011081 259 REGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVF-----CEERRMREAEKL 304 (494)
Q Consensus 259 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-----~~~g~~~~a~~~ 304 (494)
..|++=+|-++++++-...-.+....+..||... .+.|+.+.|..+
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 4566666666666665432223344444444432 234555555443
No 452
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=35.13 E-value=4.7e+02 Score=26.12 Aligned_cols=60 Identities=15% Similarity=0.095 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHc
Q 011081 427 MFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYM--KEGNVEMATMLRKEMFEN 487 (494)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~ 487 (494)
+.++..+.+.|-.++|.+++..+.... +|+...|..+|+.-. ..-+...++++++.|...
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~ 525 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE 525 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH
Confidence 456666778888999999999998763 678888888887432 223478888999888754
No 453
>PRK09857 putative transposase; Provisional
Probab=35.09 E-value=3.3e+02 Score=25.14 Aligned_cols=58 Identities=12% Similarity=0.215 Sum_probs=28.6
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011081 328 CEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPE 386 (494)
Q Consensus 328 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 386 (494)
.+.++.++..++++.+.+. .+.......++..-+.+.|.-+++.++..+|...|+..+
T Consensus 217 ~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 217 LQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred hhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3444444444555444433 122222333444444455555566667777777766543
No 454
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=34.92 E-value=2.2e+02 Score=25.42 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=23.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 429 LIKGLCEEGKMEEALKVQAEMVGK----GF-EPSLEIYSAFIDGYMKEGNVEMATMLRKE 483 (494)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 483 (494)
+...|.+.|++++|.++|+.+... |- .+...+...+..++.+.|+.++...+.=+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 334444444444444444444311 11 12233344444555555555555544433
No 455
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=34.52 E-value=2.9e+02 Score=23.57 Aligned_cols=18 Identities=28% Similarity=0.250 Sum_probs=14.6
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 011081 434 CEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~ 451 (494)
.+.|+++.|.+.++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 467899999998888864
No 456
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=34.29 E-value=2.8e+02 Score=23.54 Aligned_cols=48 Identities=13% Similarity=0.057 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhCCCCCC--HHHH-----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 333 MARAEEFFREMGLSGVESS--SVTF-----EHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 333 ~~~A~~~~~~m~~~~~~~~--~~~~-----~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
.+.|+.+|+.+.+.--.|. .... ...+..|.+.|.+++|.++++....
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 5667777777765532221 1111 2234456677777777777777655
No 457
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=34.16 E-value=3.4e+02 Score=24.11 Aligned_cols=59 Identities=7% Similarity=0.052 Sum_probs=39.4
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHh-cCCHHHHHHHHHHHHh
Q 011081 252 ALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCE-ERRMREAEKLWEEMRD 310 (494)
Q Consensus 252 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~ 310 (494)
-++..+-+.|+++++...+.++...+...+..-.+.|-.+|-. .|....+++++..+.+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 4567777889999999999999888777777666666666633 3555566666666544
No 458
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=34.08 E-value=3.5e+02 Score=24.38 Aligned_cols=160 Identities=14% Similarity=0.082 Sum_probs=0.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCH
Q 011081 293 CEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS----GVESSSVTFEHLVNGYCRAGDV 368 (494)
Q Consensus 293 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g~~ 368 (494)
.+.+++++|.+++..--.. +.+.|+..-|.++-..+.+. +.+.|......++..+...+.-
T Consensus 1 v~~kky~eAidLL~~Ga~~---------------ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~ 65 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYSGALI---------------LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPE 65 (260)
T ss_dssp HHTT-HHHHHHHHHHHHHH---------------HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT
T ss_pred CccccHHHHHHHHHHHHHH---------------HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCC
Q ss_pred H-HHHHHHHHHHH-----CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011081 369 D-SAILVYNDMCR-----KGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEA 442 (494)
Q Consensus 369 ~-~a~~~~~~m~~-----~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 442 (494)
+ +-.++.+.+++ ..-.-|......+...|.+.+++.+|...|- .+-.++...+..++..+...|...++
T Consensus 66 ~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl-----~~~~~~~~~~~~ll~~~~~~~~~~e~ 140 (260)
T PF04190_consen 66 EPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL-----LGTDPSAFAYVMLLEEWSTKGYPSEA 140 (260)
T ss_dssp -TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH-----TS-HHHHHHHHHHHHHHHHHTSS--H
T ss_pred cchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH-----hcCChhHHHHHHHHHHHHHhcCCcch
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011081 443 LKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFEN 487 (494)
Q Consensus 443 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 487 (494)
--++.+++ --|.-.|+...|..+++...+.
T Consensus 141 dlfi~RaV---------------L~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 DLFIARAV---------------LQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHH---------------HHHHHTTBHHHHHHHHHHHHHH
T ss_pred hHHHHHHH---------------HHHHHhcCHHHHHHHHHHHHHH
No 459
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=33.80 E-value=3.2e+02 Score=25.49 Aligned_cols=27 Identities=11% Similarity=0.289 Sum_probs=15.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH-Hccccc
Q 011081 464 FIDGYMKEGNVEMATMLRKEMF-ENQVRQ 491 (494)
Q Consensus 464 li~~~~~~g~~~~a~~~~~~m~-~~~~~p 491 (494)
++++. ..|+..+|..++.++. +.|..|
T Consensus 258 l~~ai-~~~~~~~a~~~l~~l~~~~g~~~ 285 (337)
T PRK12402 258 LLDAA-EAGDFTDARKTLDDLLIDEGLSG 285 (337)
T ss_pred HHHHH-HcCCHHHHHHHHHHHHHHcCCCH
Confidence 44433 3456777777777665 455443
No 460
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=33.77 E-value=3.8e+02 Score=24.64 Aligned_cols=27 Identities=11% Similarity=-0.011 Sum_probs=16.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011081 385 PEGSTIEVLIGELCDKRRVFEALDILK 411 (494)
Q Consensus 385 p~~~~~~~li~~~~~~~~~~~a~~~~~ 411 (494)
.|...|..++.+|.-.|+...+.+-+.
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~~dkl~ 221 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSAMDKLQ 221 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 356667777777776666665554443
No 461
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=33.00 E-value=3.2e+02 Score=25.30 Aligned_cols=40 Identities=8% Similarity=0.115 Sum_probs=21.8
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 373 LVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKA 412 (494)
Q Consensus 373 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 412 (494)
++|+.|.+.++.|.-..+.-+.-.+.+.=.+.+.+.+|+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDs 303 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDS 303 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHH
Confidence 4555555555555555555555555555555555555553
No 462
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=32.96 E-value=5e+02 Score=25.77 Aligned_cols=85 Identities=15% Similarity=0.199 Sum_probs=51.6
Q ss_pred HHHHHHHHHHH-HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--C-----------CCCHHHHHHHHHHH
Q 011081 368 VDSAILVYNDM-CRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFG--L-----------FPTEKSYMFLIKGL 433 (494)
Q Consensus 368 ~~~a~~~~~~m-~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~-----------~p~~~~~~~li~~~ 433 (494)
.++..+.+... .+.|+..+......++.. ..|++..|...++......+ + .+....| .++++
T Consensus 182 ~~el~~~L~~~~~~eg~~i~~~al~~L~~~--s~gdlr~a~~~Lekl~~~~~~~It~~~V~~l~~~~~~~~vf-~L~~a- 257 (451)
T PRK06305 182 EETIIDKLALIAKQEGIETSREALLPIARA--AQGSLRDAESLYDYVVGLFPKSLDPDSVAKALGLLSQDSLY-TLDEA- 257 (451)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHHCCCCHHHHH-HHHHH-
Confidence 34445455543 446766666666666543 36889999998885432211 1 1112222 34543
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC
Q 011081 434 CEEGKMEEALKVQAEMVGKGFEP 456 (494)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~~~~p 456 (494)
...++.++|..+++.+.+.|..|
T Consensus 258 i~~~d~~~al~~l~~L~~~g~~~ 280 (451)
T PRK06305 258 ITTQNYAQALEPVTDAMNSGVAP 280 (451)
T ss_pred HHcCCHHHHHHHHHHHHHcCcCH
Confidence 45688999999999998877664
No 463
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=32.95 E-value=2.9e+02 Score=22.98 Aligned_cols=58 Identities=10% Similarity=-0.014 Sum_probs=29.0
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 011081 345 LSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRV 403 (494)
Q Consensus 345 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 403 (494)
..|++.+..-. .++..+...++.-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 19 ~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 19 QRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 33444433222 33333333444455666666666665555555555555555555543
No 464
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=32.95 E-value=1.8e+02 Score=22.25 Aligned_cols=24 Identities=8% Similarity=0.108 Sum_probs=11.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC
Q 011081 289 MAVFCEERRMREAEKLWEEMRDKN 312 (494)
Q Consensus 289 i~~~~~~g~~~~a~~~~~~m~~~g 312 (494)
|+.+.++...++|+++.+.|.+.|
T Consensus 68 iD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 344444455555555555555444
No 465
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=32.93 E-value=2.6e+02 Score=27.14 Aligned_cols=95 Identities=21% Similarity=0.171 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHH----------------HHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 386 EGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKS----------------YMFLIKGLCEEGKMEEALKVQAEM 449 (494)
Q Consensus 386 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~----------------~~~li~~~~~~g~~~~A~~~~~~m 449 (494)
+......++..+....++.+.++..+. |..|+..+ .-.|++..+-.||+..|+++++.+
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~-----~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~i 148 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKR-----GEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENI 148 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhc-----cCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhcc
Q ss_pred -------HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 450 -------VGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMF 485 (494)
Q Consensus 450 -------~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 485 (494)
...-..-...+|..+.-+|...+++.+|.+.|...+
T Consensus 149 dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 149 DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 466
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=32.61 E-value=2.5e+02 Score=22.08 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHH
Q 011081 425 SYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIY-SAFIDGYMKEGNVEMATMLRKEM 484 (494)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m 484 (494)
+..++..++.-.|..++|.++++.. +..++-... ..+++.|.+..+-++..++-++.
T Consensus 68 cvEAlAAaLyI~G~~~~A~~lL~~F---kWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 68 CVEALAAALYILGFKEQAEELLSKF---KWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcC---CCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4455666666667777776666554 233332222 33666777766666666555444
No 467
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.25 E-value=1.9e+02 Score=20.56 Aligned_cols=33 Identities=27% Similarity=0.252 Sum_probs=21.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011081 429 LIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYS 462 (494)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 462 (494)
+++-+.++.-.++|+++++.|.++| ..+...-+
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~ 69 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG-EITPEMAK 69 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 4555667777788888888888776 44444333
No 468
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=31.57 E-value=4.3e+02 Score=24.60 Aligned_cols=32 Identities=9% Similarity=0.297 Sum_probs=18.7
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011081 378 MCRKGFEPEGSTIEVLIGELCDKRRVFEALDILK 411 (494)
Q Consensus 378 m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 411 (494)
..+.|+..|...+..++. ...|++..|+..++
T Consensus 201 a~~E~v~~d~~al~~I~~--~S~GdLR~Ait~Lq 232 (346)
T KOG0989|consen 201 ASKEGVDIDDDALKLIAK--ISDGDLRRAITTLQ 232 (346)
T ss_pred HHHhCCCCCHHHHHHHHH--HcCCcHHHHHHHHH
Confidence 334566666666665554 34566666666665
No 469
>PRK09857 putative transposase; Provisional
Probab=31.12 E-value=4.3e+02 Score=24.40 Aligned_cols=66 Identities=15% Similarity=0.115 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 011081 285 YSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESS 351 (494)
Q Consensus 285 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 351 (494)
+..++.-..+.++.++..++++.+.+. .+......-++..-+.+.|.-+++.++.++|...|+..+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 445555555667777777777777655 222333344566666777777788888999988887655
No 470
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=30.90 E-value=3.8e+02 Score=23.80 Aligned_cols=38 Identities=16% Similarity=0.469 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 011081 349 ESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEG 387 (494)
Q Consensus 349 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 387 (494)
.|.+.....++..|. .+++++|.+++.++.+.|+.|..
T Consensus 236 ~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 466666666666543 35677777777777777776643
No 471
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=30.89 E-value=2.6e+02 Score=21.85 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 441 EALKVQAEMVGKGFEPS-LEIYSAFIDGYMKEGNVEMATMLRKE 483 (494)
Q Consensus 441 ~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~ 483 (494)
.+.++|..|..+|+.-. ..-|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77888888887766544 55666667777777888888887765
No 472
>PRK12798 chemotaxis protein; Reviewed
Probab=30.73 E-value=5.1e+02 Score=25.20 Aligned_cols=225 Identities=13% Similarity=0.095 Sum_probs=128.8
Q ss_pred hcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc-cCCHHH
Q 011081 259 REGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCE--ERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCE-IGEMAR 335 (494)
Q Consensus 259 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~ 335 (494)
.-|++.-...++. .+..++.. ..|+.+..+ .|+-+++.+.+..+.-...++....|-.|+.+-.- ..+..+
T Consensus 93 SGGnP~vlr~L~~----~d~~~~~d--~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~ 166 (421)
T PRK12798 93 SGGNPATLRKLLA----RDKLGNFD--QRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPAT 166 (421)
T ss_pred cCCCHHHHHHHHH----cCCCChhh--HHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHH
Confidence 3466655444443 33233222 334444333 68999999999999877778888889888876544 568999
Q ss_pred HHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhH-HHHHHHHHhcCCHHHHHHH
Q 011081 336 AEEFFREMGLSGVESSSV----TFEHLVNGYCRAGDVDSAILVYNDMCRK-GFEPEGSTI-EVLIGELCDKRRVFEALDI 409 (494)
Q Consensus 336 A~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~-~~li~~~~~~~~~~~a~~~ 409 (494)
|+++|++..-. -|.+. ...--+......|+.+++..+-..-..+ ...|-..-| ..+...+.+..+-..- +.
T Consensus 167 Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~ 243 (421)
T PRK12798 167 ALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-AR 243 (421)
T ss_pred HHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HH
Confidence 99999987643 34332 3333445567889988877665544332 222322222 2233333333322211 11
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHH--HhcCCHHHHHHHHHHHHH
Q 011081 410 LKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSL-EIYSAFIDGY--MKEGNVEMATMLRKEMFE 486 (494)
Q Consensus 410 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~--~~~g~~~~a~~~~~~m~~ 486 (494)
+...+....-.-....|..+...-...|+.+-|...-.+.....-..+. ..-..|-.+. .-..+++++.+.+..+-.
T Consensus 244 l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~ 323 (421)
T PRK12798 244 LVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDR 323 (421)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCCh
Confidence 2223333222223457888888888899999988888877765311111 1111122222 233568888888887766
Q ss_pred cccccc
Q 011081 487 NQVRQE 492 (494)
Q Consensus 487 ~~~~pd 492 (494)
....+.
T Consensus 324 ~~L~~~ 329 (421)
T PRK12798 324 DKLSER 329 (421)
T ss_pred hhCChh
Confidence 665554
No 473
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=30.73 E-value=6.9e+02 Score=26.73 Aligned_cols=57 Identities=16% Similarity=0.108 Sum_probs=36.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcccccc
Q 011081 435 EEGKMEEALKVQAEMVGKGFEPSLE-IYSAFIDGYMKEGNVEMATMLRKEMFENQVRQE 492 (494)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~pd 492 (494)
..++++.+..+++.....|.. +.. .|-..++.-...|+...++.+++...-.-..|+
T Consensus 474 l~~nmd~~R~iWn~imty~~~-~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~ 531 (881)
T KOG0128|consen 474 LLKNMDKAREIWNFIMTYGGG-SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPE 531 (881)
T ss_pred HhhchhhhhHhhhccccCCcc-hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCch
Confidence 357788888888888765422 222 455555555666777777777776665544443
No 474
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=30.61 E-value=1.7e+02 Score=30.12 Aligned_cols=61 Identities=10% Similarity=0.093 Sum_probs=23.6
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 011081 281 DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREM 343 (494)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 343 (494)
+...-.-++..|.+.|-.+.|.++.+.+-..- ....-|..-+..+.++|+...+..+-+.+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH---------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444566666777777777766666554331 11223444444555555554444443333
No 475
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=30.57 E-value=3.7e+02 Score=23.45 Aligned_cols=49 Identities=16% Similarity=0.088 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhCCCCC----CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011081 334 ARAEEFFREMGLSGVES----SS-VTFEHLVNGYCRAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 334 ~~A~~~~~~m~~~~~~~----~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 382 (494)
..|.+.|.+..+..-.| +. ...-.+...+.+.|+.++|.+.|..+...+
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 44566666655442121 11 223344456667788888888888877654
No 476
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=30.45 E-value=7.8e+02 Score=27.25 Aligned_cols=210 Identities=11% Similarity=0.138 Sum_probs=100.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHH-HcCCC--cCHhHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHhHHHHHH---
Q 011081 252 ALMVGFYREGAFEKVEDVWVEMA-RLGCE--PDCYSYSVLMAVFCE-ERRMREAEKLWEEMRDKNVEHDVVAYNTII--- 324 (494)
Q Consensus 252 ~li~~~~~~g~~~~a~~~~~~m~-~~g~~--p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~li--- 324 (494)
..|..+...+++.+|+.+.++-+ ..++- -|...|-.=+..+.+ .++.+---.++..+.+..+. ...|....
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt--~tmY~~~~~~~ 776 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVT--KTMYKDTYPPS 776 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhccccccc--ccccccccccc
Confidence 44567778899999887765432 22211 123334333444433 35555444445555444221 11122111
Q ss_pred ---------HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCChhhHHHH
Q 011081 325 ---------GGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAG--DVDSAILVYNDMCRKGFEPEGSTIEVL 393 (494)
Q Consensus 325 ---------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~l 393 (494)
..+...++.+..-+.+.+..+.. .-...-+..++.+|++.+ ++++|+.+..++.+.+ ...-...
T Consensus 777 ~~~~~~~~~~~~~~~~KVn~ICdair~~l~~~-~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~----~~~ae~a 851 (928)
T PF04762_consen 777 SEAQPNSNSSTASSESKVNKICDAIRKALEKP-KDKDKYLQPILTAYVKKSPPDLEEALQLIKELREED----PESAEEA 851 (928)
T ss_pred cccccccccCCCccccHHHHHHHHHHHHhccc-ccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcC----hHHHHHH
Confidence 11122334455555554444321 223345677889999988 8999999999998762 2222222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011081 394 IGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGN 473 (494)
Q Consensus 394 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 473 (494)
+..++-.-+ +-++|+..+--+ |.. -+++-|--.+.|..|=+-+++++.+. +|+..-| .|+. ..|+
T Consensus 852 lkyl~fLvD---vn~Ly~~ALG~Y----Dl~--Lal~VAq~SQkDPKEYLPfL~~L~~l--~~~~rry--~ID~--hLkR 916 (928)
T PF04762_consen 852 LKYLCFLVD---VNKLYDVALGTY----DLE--LALMVAQQSQKDPKEYLPFLQELQKL--PPLYRRY--KIDD--HLKR 916 (928)
T ss_pred HhHheeecc---HHHHHHHHhhhc----CHH--HHHHHHHHhccChHHHHHHHHHHHhC--Chhheee--eHhh--hhCC
Confidence 222221111 112222111111 111 12333333445666766667766632 4433222 2332 4577
Q ss_pred HHHHHHHHHH
Q 011081 474 VEMATMLRKE 483 (494)
Q Consensus 474 ~~~a~~~~~~ 483 (494)
+++|++-+.+
T Consensus 917 y~kAL~~L~~ 926 (928)
T PF04762_consen 917 YEKALRHLSA 926 (928)
T ss_pred HHHHHHHHHh
Confidence 8888876654
No 477
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=30.32 E-value=3.7e+02 Score=29.12 Aligned_cols=45 Identities=16% Similarity=0.280 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHH-HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 368 VDSAILVYNDMC-RKGFEPEGSTIEVLIGELCDKRRVFEALDILKARV 414 (494)
Q Consensus 368 ~~~a~~~~~~m~-~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 414 (494)
.+...+++.++. +.|+..+...+..++.. ..|++..++..+++.+
T Consensus 181 ~~~l~~~L~~il~~EGv~id~eal~lLa~~--sgGdlR~Al~eLEKLi 226 (824)
T PRK07764 181 PEVMRGYLERICAQEGVPVEPGVLPLVIRA--GGGSVRDSLSVLDQLL 226 (824)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHH
Confidence 444555555543 45776666666655543 3578888888888655
No 478
>PRK09462 fur ferric uptake regulator; Provisional
Probab=29.95 E-value=2.7e+02 Score=22.40 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=27.0
Q ss_pred HHHCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 011081 378 MCRKGFEPEGSTIEVLIGELCDK-RRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKM 439 (494)
Q Consensus 378 m~~~~~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 439 (494)
+.+.|++++..- ..++..+... +..-.|.++++ .+.+.+...+..|.-.-+..+...|-+
T Consensus 8 l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~-~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYK-RLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHH-HHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 344555444332 2233333332 34555666655 344444444444444444555555543
No 479
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.94 E-value=5.7e+02 Score=25.49 Aligned_cols=198 Identities=12% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-CCCcC--------HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARL-GCEPD--------CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDV 317 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 317 (494)
..+...++-+-.-.|+..+|++-..+|.+. .-.|. ......+..-++..+.++.|+.-|.+..+.--..|.
T Consensus 323 m~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl 402 (629)
T KOG2300|consen 323 MILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDL 402 (629)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHH
Q ss_pred hHH--HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH----------HHHHHHHHhcCCHHHHHHHHHHHHH-----
Q 011081 318 VAY--NTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTF----------EHLVNGYCRAGDVDSAILVYNDMCR----- 380 (494)
Q Consensus 318 ~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~----------~~li~~~~~~g~~~~a~~~~~~m~~----- 380 (494)
..+ ..+.-.|.+.|+-+.-.++++.+- +++..++ -.-.-.....+++.||...+.+-++
T Consensus 403 ~a~~nlnlAi~YL~~~~~ed~y~~ld~i~----p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae 478 (629)
T KOG2300|consen 403 QAFCNLNLAISYLRIGDAEDLYKALDLIG----PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE 478 (629)
T ss_pred HHHHHHhHHHHHHHhccHHHHHHHHHhcC----CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHH-------HHHHHHHHHhcCCHHHHHHHHHH
Q 011081 381 KGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKS-------YMFLIKGLCEEGKMEEALKVQAE 448 (494)
Q Consensus 381 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~-------~~~li~~~~~~g~~~~A~~~~~~ 448 (494)
.-..........+-..+...|+..++.+.+...|.-..-.||..+ |..+..++...|.-++-..+-.+
T Consensus 479 d~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~~ 553 (629)
T KOG2300|consen 479 DLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRKH 553 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHHH
No 480
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=29.74 E-value=4.5e+02 Score=24.20 Aligned_cols=113 Identities=13% Similarity=0.082 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCE 329 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 329 (494)
--.++..+.+.++..+..+.+..+.. ...-...+..+...|++..|+++..+..+.- -....|+.+=..
T Consensus 101 ~L~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l--~~l~~~~c~~~L--- 169 (291)
T PF10475_consen 101 GLEILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQLL--EELKGYSCVRHL--- 169 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HhcccchHHHHH---
Confidence 34455666666777777777766653 2344556777778899999998888776530 011111111111
Q ss_pred cCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011081 330 IGEMARAEEFFREMGLS-----GVESSSVTFEHLVNGYCRAGDVDSAIL 373 (494)
Q Consensus 330 ~g~~~~A~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~ 373 (494)
..++++-....+++.+. -..-|+..|..+..+|...|+.+.+.+
T Consensus 170 ~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 170 SSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHH
Confidence 11223333333332221 125678889999999999887666543
No 481
>PHA03100 ankyrin repeat protein; Provisional
Probab=29.72 E-value=3.4e+02 Score=26.95 Aligned_cols=6 Identities=17% Similarity=0.219 Sum_probs=2.3
Q ss_pred HcCCCc
Q 011081 275 RLGCEP 280 (494)
Q Consensus 275 ~~g~~p 280 (494)
+.|..|
T Consensus 56 ~~g~~~ 61 (480)
T PHA03100 56 DNGADI 61 (480)
T ss_pred HcCCCC
Confidence 334333
No 482
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=29.54 E-value=4.4e+02 Score=26.01 Aligned_cols=148 Identities=13% Similarity=0.154 Sum_probs=83.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC------CC---CCHHHHHHHHHHH---
Q 011081 295 ERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSG------VE---SSSVTFEHLVNGY--- 362 (494)
Q Consensus 295 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~---~~~~~~~~li~~~--- 362 (494)
.+.+++-.++++.+.+.| .+| ....-|++|.+.+++++|...+++-.+.| .+ -...+...++...
T Consensus 67 ~~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~P 143 (480)
T TIGR01503 67 VALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLP 143 (480)
T ss_pred CCcHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCC
Confidence 356788888888888876 233 55567899999999999999998876643 11 1223333444432
Q ss_pred --HhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHH---H---HHHhCCCCCCHHHHHHHHH
Q 011081 363 --CRAGDVDSAILVYNDMCRKGFEPE---GSTIEVLIGELCDKRRVFEALDILK---A---RVVKFGLFPTEKSYMFLIK 431 (494)
Q Consensus 363 --~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~---~---~~~~~~~~p~~~~~~~li~ 431 (494)
.++|.. .+..+++-+...|+.-. ..+|+. -|++.=-+++++..|+ + ...+.|+..|..+|..|..
T Consensus 144 vQvRHGtp-DarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtg 219 (480)
T TIGR01503 144 LQIRHGTP-DARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTG 219 (480)
T ss_pred eeccCCCC-cHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCC
Confidence 233433 46667777777665322 223322 2344445555555554 1 2234577777777765432
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 011081 432 GLCEEGKMEEALKVQAEMV 450 (494)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~ 450 (494)
.++ --.+.-|..+++-+.
T Consensus 220 tLv-PPsisiav~ilE~Ll 237 (480)
T TIGR01503 220 TLV-PPSISNAIGIIEGLL 237 (480)
T ss_pred Ccc-ChHHHHHHHHHHHHH
Confidence 222 113455566666554
No 483
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=29.53 E-value=1.9e+02 Score=20.09 Aligned_cols=31 Identities=10% Similarity=0.111 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011081 333 MARAEEFFREMGLSGVESSSVTFEHLVNGYCR 364 (494)
Q Consensus 333 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 364 (494)
.+.|..++..+.... +.++..||++...+.+
T Consensus 13 tEmA~~mL~DLr~de-kRsPQLYnAI~k~L~R 43 (82)
T PF11123_consen 13 TEMAQQMLADLRDDE-KRSPQLYNAIGKLLDR 43 (82)
T ss_pred HHHHHHHHHHhcchh-hcChHHHHHHHHHHHH
Confidence 344555555444332 3444555555544443
No 484
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=29.49 E-value=2.2e+02 Score=20.57 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=0.0
Q ss_pred CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 314 EHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDM 378 (494)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 378 (494)
.|+...|..-+..-.....-+. ++|+-....|+..|...|..+++....+--.+...++++.|
T Consensus 7 ~~~~~~~k~~~~rk~~Ls~eE~--EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 7 SPTAQVYKYSLRRKKVLSAEEV--ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred CChHHHHHHHHHHHhccCHHHH--HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
No 485
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.87 E-value=5.2e+02 Score=24.69 Aligned_cols=88 Identities=10% Similarity=0.123 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHH-HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------------CCHHHHHHHHHHH
Q 011081 367 DVDSAILVYNDMC-RKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLF------------PTEKSYMFLIKGL 433 (494)
Q Consensus 367 ~~~~a~~~~~~m~-~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~------------p~~~~~~~li~~~ 433 (494)
..++..+.+.... +.|+..+......++. ...|+...|...++......+-. ++......++++.
T Consensus 179 ~~~el~~~L~~~~~~~g~~i~~~al~~ia~--~s~G~~R~al~~l~~~~~~~~~~It~~~v~~~l~~~~~~~i~~l~~ai 256 (363)
T PRK14961 179 SEEKIFNFLKYILIKESIDTDEYALKLIAY--HAHGSMRDALNLLEHAINLGKGNINIKNVTDMLGLLNEKQSFLLTDAL 256 (363)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3455555555543 4566556555555544 24688999999887543221111 1222223344444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC
Q 011081 434 CEEGKMEEALKVQAEMVGKGFEPS 457 (494)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~~~~p~ 457 (494)
..++.+.+..+++++.+.|..|.
T Consensus 257 -~~~~~~~~~~~~~~l~~~g~~~~ 279 (363)
T PRK14961 257 -LKKDSKKTMLLLNKISSIGIEWE 279 (363)
T ss_pred -HcCCHHHHHHHHHHHHHcCCCHH
Confidence 34788888888888887766554
No 486
>PRK09462 fur ferric uptake regulator; Provisional
Probab=28.83 E-value=3.1e+02 Score=22.07 Aligned_cols=60 Identities=15% Similarity=0.109 Sum_probs=30.3
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 011081 343 MGLSGVESSSVTFEHLVNGYCRA-GDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRV 403 (494)
Q Consensus 343 m~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 403 (494)
+.+.|++.+..- ..++..+... +..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 8 l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 334454443322 2333333332 34556666666666666555556655555555555543
No 487
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=28.69 E-value=7e+02 Score=26.15 Aligned_cols=85 Identities=14% Similarity=0.185 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHH-HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH------------HHHHHHHHHHH
Q 011081 368 VDSAILVYNDMC-RKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTE------------KSYMFLIKGLC 434 (494)
Q Consensus 368 ~~~a~~~~~~m~-~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~------------~~~~~li~~~~ 434 (494)
.++....+.... ..|+..+......+.. ...|.+..|+.+++..+...+-..+. .....++.++.
T Consensus 180 ~~ei~~~L~~il~~e~i~~e~~aL~~Ia~--~s~Gs~R~Al~lldqaia~~~~~it~~~v~~~lg~~d~~~~~~ll~al~ 257 (647)
T PRK07994 180 VEQIRQQLEHILQAEQIPFEPRALQLLAR--AADGSMRDALSLTDQAIASGNGQVTTDDVSAMLGTLDDDQALSLLEALV 257 (647)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHccCCHHHHHHHHHHHH
Confidence 345555555543 3576666555544443 47899999999987655432211222 12223344433
Q ss_pred hcCCHHHHHHHHHHHHhCCCC
Q 011081 435 EEGKMEEALKVQAEMVGKGFE 455 (494)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~~~~ 455 (494)
.++.+.++.++.++.+.|..
T Consensus 258 -~~d~~~~l~~~~~l~~~g~d 277 (647)
T PRK07994 258 -EGDGERVMALINQLAERGPD 277 (647)
T ss_pred -cCCHHHHHHHHHHHHHhCCC
Confidence 35677777777777665543
No 488
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.58 E-value=5.2e+02 Score=24.62 Aligned_cols=93 Identities=18% Similarity=0.230 Sum_probs=55.0
Q ss_pred HHHHHHH-HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC------------HHHHHHHHHHHHh
Q 011081 369 DSAILVY-NDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPT------------EKSYMFLIKGLCE 435 (494)
Q Consensus 369 ~~a~~~~-~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~------------~~~~~~li~~~~~ 435 (494)
++....+ +.+.+.|+..+......++.. ..|+...+...++....-.+-..+ ....-.++++. .
T Consensus 170 ~~l~~~l~~~~~~~g~~i~~~al~~l~~~--~~gdlr~~~~~lekl~~y~~~~it~~~v~~~~~~~~~~~if~l~~ai-~ 246 (367)
T PRK14970 170 KDIKEHLAGIAVKEGIKFEDDALHIIAQK--ADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYINVTDLI-L 246 (367)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCCHHHHHHHHHHH-H
Confidence 4444444 344567876677776666653 457899999988854421111111 11222244544 4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011081 436 EGKMEEALKVQAEMVGKGFEPSLEIYSAFI 465 (494)
Q Consensus 436 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 465 (494)
.|+..+|..+++.+...|..| ......+.
T Consensus 247 ~~~~~~a~~~~~~l~~~~~~~-~~il~~l~ 275 (367)
T PRK14970 247 ENKIPELLLAFNEILRKGFDG-HHFIAGLA 275 (367)
T ss_pred cCCHHHHHHHHHHHHHcCCCH-HHHHHHHH
Confidence 478999999999998887666 33444443
No 489
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=28.55 E-value=2.3e+02 Score=20.54 Aligned_cols=69 Identities=10% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHH
Q 011081 179 TCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFY 258 (494)
Q Consensus 179 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~ 258 (494)
.+-++++.+.+.|+- +......+-.+--..|+.+.|.+++..+ +.....|...++++.
T Consensus 20 ~~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L---------------------~rg~~aF~~Fl~aLr 77 (88)
T cd08819 20 KTRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRI---------------------VQKEGWFSKFLQALR 77 (88)
T ss_pred hHHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHh---------------------ccCCcHHHHHHHHHH
Q ss_pred hcCCHhHHHHH
Q 011081 259 REGAFEKVEDV 269 (494)
Q Consensus 259 ~~g~~~~a~~~ 269 (494)
+.|.-+-|.++
T Consensus 78 eT~~~~LA~el 88 (88)
T cd08819 78 ETEHHELAREL 88 (88)
T ss_pred HcCchhhhhcC
No 490
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=28.53 E-value=5.1e+02 Score=24.50 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhCCCCCCH----hHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011081 298 MREAEKLWEEMRDKNVEHDV----VAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGY 362 (494)
Q Consensus 298 ~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 362 (494)
.+++..+++.+++. -|+. .-|-.++......|.++.++.+|++....|..|-...-.++++.+
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 34666666666654 3442 345566666666666666777777766666666555555555443
No 491
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=28.14 E-value=4.6e+02 Score=23.83 Aligned_cols=145 Identities=14% Similarity=0.158 Sum_probs=77.2
Q ss_pred cCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc----cC
Q 011081 260 EGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCE----ERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCE----IG 331 (494)
Q Consensus 260 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g 331 (494)
.+++..+...+......+ +......+...|.. ..+..+|.++|..+-+.| .......|...|.. ..
T Consensus 54 ~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 54 PPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCccc
Confidence 345556666666555433 12333333333333 345677888888666665 33444445555555 33
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----c
Q 011081 332 EMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAG-------DVDSAILVYNDMCRKGFEPEGSTIEVLIGELCD----K 400 (494)
Q Consensus 332 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~ 400 (494)
+..+|...|++..+.|..+...+...+...|..-. +...|...|.++-..+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 77888888888888774443233333444433321 2236777777777666 22233333333322 3
Q ss_pred CCHHHHHHHHHHH
Q 011081 401 RRVFEALDILKAR 413 (494)
Q Consensus 401 ~~~~~a~~~~~~~ 413 (494)
.+..+|...|...
T Consensus 205 ~d~~~A~~wy~~A 217 (292)
T COG0790 205 RDLKKAFRWYKKA 217 (292)
T ss_pred cCHHHHHHHHHHH
Confidence 3666777777643
No 492
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=28.08 E-value=5.1e+02 Score=24.38 Aligned_cols=96 Identities=17% Similarity=0.279 Sum_probs=56.1
Q ss_pred HHHHHHHHHH-HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC------------HHHHHHHHHHHH
Q 011081 368 VDSAILVYND-MCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPT------------EKSYMFLIKGLC 434 (494)
Q Consensus 368 ~~~a~~~~~~-m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~------------~~~~~~li~~~~ 434 (494)
.++..+++.. +.+.|+..+......++.. ..|+...+...+++.....+-..+ ......++.+..
T Consensus 178 ~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~--~~g~~~~a~~~lekl~~~~~~~it~~~v~~~~~~~~~~~i~~l~~ai~ 255 (355)
T TIGR02397 178 LEDIVERLKKILDKEGIKIEDEALELIARA--ADGSLRDALSLLDQLISFGNGNITYEDVNELLGLVDDEKLIELLEAIL 255 (355)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCChHHHHHHHHHHHhhcCCCCCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4445555544 3456776676666666643 357888888888754432211111 112334555554
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011081 435 EEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDG 467 (494)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 467 (494)
.|+..+|.++++.+.+.|..| ......+..-
T Consensus 256 -~~~~~~a~~~~~~l~~~~~~~-~~il~~l~~~ 286 (355)
T TIGR02397 256 -NKDTAEALKILDEILESGVDP-EKFLEDLIEI 286 (355)
T ss_pred -cCCHHHHHHHHHHHHHcCCCH-HHHHHHHHHH
Confidence 489999999999999877655 3334444433
No 493
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.97 E-value=9.1e+02 Score=27.21 Aligned_cols=149 Identities=13% Similarity=0.091 Sum_probs=87.7
Q ss_pred HHHccCCHHHHHHHHHHHHh-----------------------CCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 326 GFCEIGEMARAEEFFREMGL-----------------------SGVESS-----SVTFEHLVNGYCRAGDVDSAILVYND 377 (494)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~-----------------------~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~ 377 (494)
+|...|+..+|+..|.+... .|-.|+ ..-|...++.+-+.+..|++.++-..
T Consensus 929 ~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~ 1008 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVK 1008 (1480)
T ss_pred eeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 36677888888888776532 121221 12356777788888888888887777
Q ss_pred HHHCC-C-CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHH--------
Q 011081 378 MCRKG-F-EPE-GSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTE----KSYMFLIKGLCEEGKMEEA-------- 442 (494)
Q Consensus 378 m~~~~-~-~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A-------- 442 (494)
.++.- . .|. ..+++.+.+.....|.+.+|...+-+ .||. .....++-.++.+|.++.-
T Consensus 1009 AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~-------npdserrrdcLRqlvivLfecg~l~~L~~fpfigl 1081 (1480)
T KOG4521|consen 1009 AIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR-------NPDSERRRDCLRQLVIVLFECGELEALATFPFIGL 1081 (1480)
T ss_pred HHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc-------CCcHHHHHHHHHHHHHHHHhccchHHHhhCCccch
Confidence 66631 1 122 34567777777888888888776542 2443 3456667777777765443
Q ss_pred ----HH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011081 443 ----LK-VQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLR 481 (494)
Q Consensus 443 ----~~-~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 481 (494)
.. +++..-+.........|+-|-.-+...+++.+|-.+.
T Consensus 1082 ~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1082 EQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 23 2222222211222334555555567778887776553
No 494
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=27.75 E-value=2.8e+02 Score=21.29 Aligned_cols=10 Identities=20% Similarity=0.275 Sum_probs=4.1
Q ss_pred HHHHHHHhCC
Q 011081 338 EFFREMGLSG 347 (494)
Q Consensus 338 ~~~~~m~~~~ 347 (494)
.++..+.+.|
T Consensus 13 ~vi~~l~~~g 22 (121)
T PF02631_consen 13 EVIDRLKELG 22 (121)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 3344444444
No 495
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=27.50 E-value=2e+02 Score=27.99 Aligned_cols=28 Identities=4% Similarity=-0.070 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011081 426 YMFLIKGLCEEGKMEEALKVQAEMVGKG 453 (494)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~~ 453 (494)
...-|..+.+.+++..|-.+-+++++.+
T Consensus 303 Lr~AM~~~~K~KNf~tAa~FArRLLel~ 330 (422)
T PF06957_consen 303 LRSAMSQAFKLKNFITAASFARRLLELN 330 (422)
T ss_dssp HHHHHHHCCCTTBHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHcC
Confidence 4455666778888888888888888654
No 496
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.45 E-value=2.3e+02 Score=20.12 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=10.5
Q ss_pred HHHHccCCHHHHHHHHHHHHhCC
Q 011081 325 GGFCEIGEMARAEEFFREMGLSG 347 (494)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~m~~~~ 347 (494)
+.+.++.-.++|+++++-|.++|
T Consensus 39 D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 39 DFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhC
Confidence 33344444444444444444444
No 497
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.42 E-value=6.2e+02 Score=25.46 Aligned_cols=94 Identities=17% Similarity=0.119 Sum_probs=50.8
Q ss_pred HHHHHHHHHH-HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH------------HHHHHHHHHH
Q 011081 368 VDSAILVYND-MCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEK------------SYMFLIKGLC 434 (494)
Q Consensus 368 ~~~a~~~~~~-m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~------------~~~~li~~~~ 434 (494)
.++...++.. +...|+..+......++. ...|++..|...++....-.+-..+.. ....++.+.
T Consensus 180 ~~el~~~L~~i~k~egi~id~~al~~La~--~s~G~lr~al~~Ldkl~~~~~~~It~~~V~~~lg~~~~~~vf~Li~ai- 256 (486)
T PRK14953 180 KEQIKEYLKRICNEEKIEYEEKALDLLAQ--ASEGGMRDAASLLDQASTYGEGKVTIKVVEEFLGIVSQESVRKFLNLL- 256 (486)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCCCHHHHHHHHHHH-
Confidence 3444444444 334577666666665554 345888888888875443222111111 122333333
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011081 435 EEGKMEEALKVQAEMVGKGFEPSLEIYSAFID 466 (494)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 466 (494)
..|+.+.|..+++.+.+.| -+...+-.++.
T Consensus 257 ~~~d~~~al~~l~~L~~~g--~~~~~iL~~L~ 286 (486)
T PRK14953 257 LESDVDEAIKFLRTLEEKG--YNLNKFWKQLE 286 (486)
T ss_pred HCCCHHHHHHHHHHHHHcC--CCHHHHHHHHH
Confidence 3577888888888877553 34555544443
No 498
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=27.04 E-value=1.8e+02 Score=22.06 Aligned_cols=43 Identities=7% Similarity=0.097 Sum_probs=21.4
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcC
Q 011081 254 MVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEER 296 (494)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 296 (494)
+..+...+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 3333344444556666666655554444444444444444444
No 499
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=26.96 E-value=5.5e+02 Score=24.31 Aligned_cols=48 Identities=21% Similarity=0.153 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFC 293 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 293 (494)
-+.-|-.++......|.++.++.+|++.+..|-.|-...-.++++.+-
T Consensus 139 ~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 139 LAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 356688888989999999999999999999998887777777776654
No 500
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=26.86 E-value=7.1e+02 Score=25.58 Aligned_cols=20 Identities=5% Similarity=-0.129 Sum_probs=9.2
Q ss_pred HhHHHHHHHHHcCCChhHHH
Q 011081 197 STCNALIWEVSRGKGVISGY 216 (494)
Q Consensus 197 ~~~~~ll~~~~~~~~~~~a~ 216 (494)
..+..+++++...|-.....
T Consensus 341 ~~r~~~~Dal~~~GT~~a~~ 360 (574)
T smart00638 341 KARRIFLDAVAQAGTPPALK 360 (574)
T ss_pred HHHHHHHHHHHhcCCHHHHH
Confidence 34444555555554433333
Done!