Query 011081
Match_columns 494
No_of_seqs 599 out of 3316
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 20:24:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011081.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011081hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.9E-32 1.7E-36 276.6 42.7 380 80-490 95-582 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.3E-31 7.9E-36 271.7 38.7 376 102-489 81-547 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.6E-32 5.4E-37 270.1 25.2 204 266-470 9-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 1.7E-32 5.9E-37 269.8 24.8 208 177-400 6-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 5.3E-26 1.8E-30 219.2 44.3 361 80-489 10-370 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 3.3E-24 1.1E-28 206.6 41.5 345 78-472 42-387 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 5E-22 1.7E-26 195.1 40.3 337 102-487 23-410 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 1.3E-22 4.5E-27 199.3 35.7 310 154-490 22-361 (450)
9 2gw1_A Mitochondrial precursor 99.9 7.6E-22 2.6E-26 197.1 37.6 370 79-490 16-481 (514)
10 3fp2_A TPR repeat-containing p 99.9 1.1E-19 3.7E-24 182.6 38.1 367 79-491 35-495 (537)
11 3ieg_A DNAJ homolog subfamily 99.9 2E-19 7E-24 170.5 37.6 307 158-490 3-338 (359)
12 2gw1_A Mitochondrial precursor 99.9 1.6E-19 5.6E-24 180.2 35.9 355 106-490 7-447 (514)
13 3ieg_A DNAJ homolog subfamily 99.9 2.7E-18 9.3E-23 162.7 41.3 322 104-470 2-352 (359)
14 3hym_B Cell division cycle pro 99.8 4E-18 1.4E-22 159.7 33.8 294 154-475 18-322 (330)
15 3hym_B Cell division cycle pro 99.8 2.4E-18 8.1E-23 161.2 29.4 276 192-489 18-301 (330)
16 3fp2_A TPR repeat-containing p 99.8 1.2E-17 4.1E-22 167.7 36.2 354 105-490 25-460 (537)
17 3spa_A Mtrpol, DNA-directed RN 99.8 3.4E-20 1.2E-24 187.6 13.6 165 245-414 125-308 (1134)
18 1fch_A Peroxisomal targeting s 99.8 3E-18 1E-22 163.3 25.9 290 170-485 37-357 (368)
19 4eqf_A PEX5-related protein; a 99.8 6E-18 2.1E-22 161.2 24.5 266 195-483 64-352 (365)
20 4eqf_A PEX5-related protein; a 99.8 1.2E-17 4E-22 159.2 25.1 266 158-448 65-352 (365)
21 3cv0_A Peroxisome targeting si 99.8 2.2E-17 7.7E-22 154.3 25.7 266 198-486 23-314 (327)
22 2xm6_A Protein corresponding t 99.8 1.2E-14 4.1E-19 144.1 46.7 340 82-490 56-435 (490)
23 3spa_A Mtrpol, DNA-directed RN 99.8 1.2E-19 4.2E-24 183.6 10.6 166 279-450 124-308 (1134)
24 1fch_A Peroxisomal targeting s 99.8 7.7E-17 2.6E-21 153.5 27.5 268 158-449 64-356 (368)
25 3cv0_A Peroxisome targeting si 99.8 1.2E-16 4E-21 149.4 27.5 267 159-450 22-313 (327)
26 3mkr_A Coatomer subunit epsilo 99.7 1.9E-15 6.6E-20 138.6 28.6 256 204-490 7-267 (291)
27 2xm6_A Protein corresponding t 99.7 3.3E-13 1.1E-17 133.7 46.6 320 104-488 38-397 (490)
28 3mkr_A Coatomer subunit epsilo 99.7 2.2E-15 7.4E-20 138.3 26.7 275 166-479 7-286 (291)
29 2ooe_A Cleavage stimulation fa 99.7 1.7E-13 5.9E-18 137.2 42.1 387 82-490 25-495 (530)
30 1b89_A Protein (clathrin heavy 99.7 9E-18 3.1E-22 157.9 9.9 283 117-480 15-304 (449)
31 1b89_A Protein (clathrin heavy 99.7 3.8E-16 1.3E-20 147.0 19.5 282 81-445 15-304 (449)
32 2ooe_A Cleavage stimulation fa 99.7 1.4E-13 4.8E-18 137.8 37.8 342 102-489 10-456 (530)
33 4g1t_A Interferon-induced prot 99.7 1.2E-13 4.1E-18 136.2 36.7 349 103-490 49-462 (472)
34 3uq3_A Heat shock protein STI1 99.7 2.6E-14 8.9E-19 128.4 26.3 228 246-488 4-237 (258)
35 1xi4_A Clathrin heavy chain; a 99.7 1.6E-12 5.4E-17 136.4 40.3 312 106-486 986-1308(1630)
36 3uq3_A Heat shock protein STI1 99.7 4.4E-14 1.5E-18 126.9 24.9 225 159-414 6-234 (258)
37 2pl2_A Hypothetical conserved 99.6 2.5E-14 8.4E-19 125.3 21.8 194 195-410 4-208 (217)
38 1ouv_A Conserved hypothetical 99.6 8.3E-13 2.8E-17 120.0 32.0 226 246-490 5-254 (273)
39 3u4t_A TPR repeat-containing p 99.6 5.7E-14 2E-18 127.5 24.1 235 198-452 5-250 (272)
40 2pl2_A Hypothetical conserved 99.6 3.1E-14 1.1E-18 124.7 21.2 199 157-380 4-213 (217)
41 1xi4_A Clathrin heavy chain; a 99.6 1.2E-12 4.1E-17 137.2 35.3 350 66-482 980-1340(1630)
42 2ho1_A Type 4 fimbrial biogene 99.6 2.9E-13 9.9E-18 121.3 26.1 195 197-411 38-233 (252)
43 2ho1_A Type 4 fimbrial biogene 99.6 4.3E-13 1.5E-17 120.2 27.2 201 247-452 37-238 (252)
44 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.8E-14 1.3E-18 128.8 20.4 249 207-481 16-269 (275)
45 4g1t_A Interferon-induced prot 99.6 6.7E-13 2.3E-17 130.8 30.7 351 77-460 59-468 (472)
46 2vq2_A PILW, putative fimbrial 99.6 9.1E-13 3.1E-17 115.6 27.5 203 246-452 7-211 (225)
47 3u4t_A TPR repeat-containing p 99.6 1.4E-13 4.9E-18 124.8 22.9 239 248-491 4-254 (272)
48 2vq2_A PILW, putative fimbrial 99.6 1E-12 3.5E-17 115.2 27.1 206 281-490 7-214 (225)
49 2h6f_A Protein farnesyltransfe 99.6 3.6E-13 1.2E-17 127.8 25.5 247 197-469 98-364 (382)
50 1xnf_A Lipoprotein NLPI; TPR, 99.6 4.2E-14 1.4E-18 128.5 18.4 243 177-446 21-269 (275)
51 1ouv_A Conserved hypothetical 99.6 3.4E-12 1.2E-16 116.0 30.6 224 195-453 5-252 (273)
52 2q7f_A YRRB protein; TPR, prot 99.6 1.9E-13 6.6E-18 121.6 21.6 194 197-411 24-217 (243)
53 2h6f_A Protein farnesyltransfe 99.6 4.3E-13 1.5E-17 127.3 24.7 236 246-489 96-350 (382)
54 2q7f_A YRRB protein; TPR, prot 99.6 1.4E-13 4.9E-18 122.5 20.1 202 157-382 22-223 (243)
55 4a1s_A PINS, partner of inscut 99.6 2E-13 6.8E-18 132.0 20.9 274 199-487 51-372 (411)
56 3ro2_A PINS homolog, G-protein 99.6 2.7E-13 9.2E-18 126.7 20.3 275 201-490 10-335 (338)
57 4a1s_A PINS, partner of inscut 99.6 3.2E-13 1.1E-17 130.5 20.9 277 161-452 51-372 (411)
58 3sf4_A G-protein-signaling mod 99.6 4.6E-13 1.6E-17 128.9 22.0 278 159-451 10-335 (406)
59 2ond_A Cleavage stimulation fa 99.5 1.5E-11 5.1E-16 113.8 30.5 240 246-491 7-274 (308)
60 3sf4_A G-protein-signaling mod 99.5 6.3E-13 2.2E-17 127.9 21.2 267 132-415 20-335 (406)
61 3ro2_A PINS homolog, G-protein 99.5 1.1E-12 3.8E-17 122.4 20.4 276 162-452 9-332 (338)
62 2ond_A Cleavage stimulation fa 99.5 2.9E-11 1E-15 111.9 28.4 219 213-452 33-270 (308)
63 3vtx_A MAMA; tetratricopeptide 99.5 6.6E-12 2.3E-16 106.6 21.6 165 196-380 5-169 (184)
64 3ulq_A Response regulator aspa 99.5 6.9E-12 2.4E-16 120.0 23.4 234 253-489 109-370 (383)
65 3e4b_A ALGK; tetratricopeptide 99.5 1.4E-11 5E-16 120.3 25.8 344 80-488 14-388 (452)
66 4abn_A Tetratricopeptide repea 99.5 3E-12 1E-16 125.9 21.1 212 177-411 84-316 (474)
67 3vtx_A MAMA; tetratricopeptide 99.4 1.9E-11 6.5E-16 103.7 21.7 169 155-346 2-170 (184)
68 4abn_A Tetratricopeptide repea 99.4 8.4E-12 2.9E-16 122.8 21.3 214 212-448 84-317 (474)
69 3nf1_A KLC 1, kinesin light ch 99.4 6.3E-12 2.2E-16 116.1 19.3 245 244-489 24-309 (311)
70 3ulq_A Response regulator aspa 99.4 6E-11 2E-15 113.5 25.4 235 202-451 109-367 (383)
71 3e4b_A ALGK; tetratricopeptide 99.4 2.3E-11 7.7E-16 118.9 21.5 314 111-489 9-353 (452)
72 3nf1_A KLC 1, kinesin light ch 99.4 2.6E-11 9E-16 111.9 20.1 204 246-451 68-306 (311)
73 3as5_A MAMA; tetratricopeptide 99.4 8.1E-11 2.8E-15 99.4 20.5 164 197-380 9-172 (186)
74 1hz4_A MALT regulatory protein 99.4 8.1E-10 2.8E-14 105.1 29.3 273 164-451 20-321 (373)
75 3q15_A PSP28, response regulat 99.4 5.9E-10 2E-14 106.3 27.6 234 250-487 104-365 (378)
76 3as5_A MAMA; tetratricopeptide 99.3 1.9E-10 6.6E-15 97.1 20.9 166 319-489 10-175 (186)
77 4gyw_A UDP-N-acetylglucosamine 99.3 6.6E-11 2.2E-15 121.3 20.2 165 196-380 9-173 (723)
78 1hz4_A MALT regulatory protein 99.3 5.6E-10 1.9E-14 106.2 25.2 275 201-487 19-322 (373)
79 3q15_A PSP28, response regulat 99.3 1.5E-09 5E-14 103.5 27.8 235 201-451 106-364 (378)
80 4gyw_A UDP-N-acetylglucosamine 99.3 1.5E-10 5.3E-15 118.5 19.2 167 156-345 7-173 (723)
81 3edt_B KLC 2, kinesin light ch 99.2 1.3E-10 4.5E-15 105.5 15.7 227 177-415 24-280 (283)
82 3edt_B KLC 2, kinesin light ch 99.2 1.5E-10 5E-15 105.1 15.5 229 258-487 12-281 (283)
83 4i17_A Hypothetical protein; T 99.2 1.2E-09 4.3E-14 95.9 20.7 198 280-490 5-212 (228)
84 4i17_A Hypothetical protein; T 99.2 1.6E-09 5.5E-14 95.2 20.8 196 157-382 6-210 (228)
85 4e6h_A MRNA 3'-END-processing 99.2 1.4E-07 4.8E-12 95.6 36.3 240 247-491 302-574 (679)
86 4e6h_A MRNA 3'-END-processing 99.2 8.5E-08 2.9E-12 97.2 34.1 362 87-489 50-535 (679)
87 2fo7_A Synthetic consensus TPR 99.2 3.2E-09 1.1E-13 84.1 17.8 130 249-381 3-132 (136)
88 1qqe_A Vesicular transport pro 99.1 1.8E-09 6.2E-14 98.9 17.3 163 249-411 39-223 (292)
89 1qqe_A Vesicular transport pro 99.1 4.9E-09 1.7E-13 96.0 18.4 210 262-488 32-270 (292)
90 2fo7_A Synthetic consensus TPR 99.1 6E-09 2.1E-13 82.5 16.2 130 198-346 3-132 (136)
91 3mv2_B Coatomer subunit epsilo 99.1 8.3E-08 2.8E-12 86.6 24.3 201 244-458 68-286 (310)
92 3qky_A Outer membrane assembly 99.0 1.9E-08 6.6E-13 90.3 18.8 189 244-452 12-224 (261)
93 3qky_A Outer membrane assembly 99.0 4.1E-08 1.4E-12 88.1 20.7 188 280-491 13-228 (261)
94 3urz_A Uncharacterized protein 99.0 2.2E-08 7.4E-13 86.6 18.0 164 202-388 10-191 (208)
95 3mv2_B Coatomer subunit epsilo 99.0 2.2E-07 7.6E-12 83.8 23.9 220 249-490 47-285 (310)
96 3urz_A Uncharacterized protein 99.0 3.8E-08 1.3E-12 85.0 18.3 189 248-466 5-198 (208)
97 2pzi_A Probable serine/threoni 99.0 9.5E-09 3.3E-13 105.6 16.6 173 207-402 402-583 (681)
98 3rjv_A Putative SEL1 repeat pr 98.9 7.6E-08 2.6E-12 83.4 19.0 176 179-382 4-198 (212)
99 2pzi_A Probable serine/threoni 98.9 7.1E-09 2.4E-13 106.6 14.5 174 169-367 402-583 (681)
100 2vsy_A XCC0866; transferase, g 98.9 2.4E-08 8.4E-13 100.6 18.2 154 209-382 2-158 (568)
101 3rjv_A Putative SEL1 repeat pr 98.9 1.6E-07 5.6E-12 81.3 20.9 177 264-453 3-198 (212)
102 4ga2_A E3 SUMO-protein ligase 98.9 5.9E-09 2E-13 84.9 10.9 142 205-366 6-148 (150)
103 3dra_A Protein farnesyltransfe 98.9 7.3E-07 2.5E-11 81.2 25.5 232 210-463 47-298 (306)
104 3qou_A Protein YBBN; thioredox 98.9 3E-08 1E-12 90.5 16.1 165 195-379 116-282 (287)
105 2r5s_A Uncharacterized protein 98.9 2E-08 6.8E-13 84.3 13.4 160 200-379 10-171 (176)
106 2yhc_A BAMD, UPF0169 lipoprote 98.9 2.4E-07 8.3E-12 81.0 20.8 188 281-491 3-217 (225)
107 3qou_A Protein YBBN; thioredox 98.9 5.4E-08 1.8E-12 88.7 17.2 166 281-450 116-282 (287)
108 3dra_A Protein farnesyltransfe 98.9 1.4E-06 4.7E-11 79.4 26.2 218 177-415 49-286 (306)
109 2vsy_A XCC0866; transferase, g 98.9 1E-07 3.5E-12 96.0 20.0 155 260-418 2-159 (568)
110 2yhc_A BAMD, UPF0169 lipoprote 98.9 3.4E-07 1.2E-11 80.0 20.6 186 246-452 3-213 (225)
111 2r5s_A Uncharacterized protein 98.9 5E-08 1.7E-12 81.8 14.0 161 250-414 9-171 (176)
112 4ga2_A E3 SUMO-protein ligase 98.8 1.2E-08 4.2E-13 83.0 9.7 141 169-332 8-149 (150)
113 2ifu_A Gamma-SNAP; membrane fu 98.8 1.7E-07 5.8E-12 86.3 18.4 191 284-479 38-253 (307)
114 2ifu_A Gamma-SNAP; membrane fu 98.8 1.7E-07 5.9E-12 86.3 17.7 194 249-445 38-254 (307)
115 1hh8_A P67PHOX, NCF-2, neutrop 98.8 4.2E-07 1.4E-11 78.5 18.8 130 247-382 6-151 (213)
116 3u3w_A Transcriptional activat 98.8 6.4E-07 2.2E-11 81.8 19.1 164 202-380 81-265 (293)
117 2uy1_A Cleavage stimulation fa 98.7 2.2E-05 7.4E-10 77.1 30.8 350 83-486 28-412 (493)
118 3u3w_A Transcriptional activat 98.7 2.8E-06 9.4E-11 77.6 22.8 164 250-413 78-263 (293)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.1E-06 3.8E-11 75.8 18.9 128 198-347 8-151 (213)
120 2qfc_A PLCR protein; TPR, HTH, 98.7 2.5E-06 8.5E-11 77.8 22.0 129 286-414 79-223 (293)
121 1a17_A Serine/threonine protei 98.7 6.4E-07 2.2E-11 73.7 16.5 131 246-379 12-144 (166)
122 1na0_A Designed protein CTPR3; 98.7 7.2E-07 2.5E-11 69.2 15.4 114 247-363 9-122 (125)
123 4gco_A Protein STI-1; structur 98.7 6.5E-07 2.2E-11 70.2 14.4 98 247-346 13-110 (126)
124 3q7a_A Farnesyltransferase alp 98.7 1.4E-05 4.8E-10 73.5 24.6 222 210-452 68-331 (349)
125 3q7a_A Farnesyltransferase alp 98.7 2.9E-05 9.9E-10 71.4 26.7 222 117-380 66-330 (349)
126 1a17_A Serine/threonine protei 98.7 1.1E-06 3.8E-11 72.2 15.9 94 285-380 16-109 (166)
127 3gw4_A Uncharacterized protein 98.7 6.4E-07 2.2E-11 76.6 14.9 25 426-450 150-174 (203)
128 2qfc_A PLCR protein; TPR, HTH, 98.6 7.3E-06 2.5E-10 74.7 22.4 168 246-413 74-263 (293)
129 2vyi_A SGTA protein; chaperone 98.6 9.9E-07 3.4E-11 69.0 14.3 120 246-368 11-130 (131)
130 2c2l_A CHIP, carboxy terminus 98.6 4.8E-07 1.6E-11 82.1 13.9 96 283-380 5-100 (281)
131 4f3v_A ESX-1 secretion system 98.6 3E-06 1E-10 75.4 18.3 206 170-382 18-238 (282)
132 4gco_A Protein STI-1; structur 98.6 1.1E-06 3.8E-11 68.8 13.9 110 197-325 14-123 (126)
133 1na0_A Designed protein CTPR3; 98.6 1.5E-06 5.1E-11 67.3 14.6 115 196-329 9-123 (125)
134 2lni_A Stress-induced-phosphop 98.6 1.1E-06 3.6E-11 69.2 13.9 120 244-366 13-132 (133)
135 2e2e_A Formate-dependent nitri 98.6 7.5E-07 2.6E-11 74.4 13.6 122 258-382 21-145 (177)
136 3gw4_A Uncharacterized protein 98.6 1.2E-06 4E-11 74.9 14.9 157 258-415 3-175 (203)
137 3gyz_A Chaperone protein IPGC; 98.6 5E-07 1.7E-11 73.2 11.8 99 246-346 35-133 (151)
138 2vgx_A Chaperone SYCD; alterna 98.6 4.6E-07 1.6E-11 73.3 11.3 99 246-346 20-118 (148)
139 2lni_A Stress-induced-phosphop 98.6 1.4E-06 4.9E-11 68.4 14.0 118 195-331 15-132 (133)
140 2c2l_A CHIP, carboxy terminus 98.6 5.1E-07 1.8E-11 81.9 12.4 193 158-380 4-198 (281)
141 2e2e_A Formate-dependent nitri 98.6 4.5E-07 1.6E-11 75.8 10.9 122 207-347 21-145 (177)
142 4f3v_A ESX-1 secretion system 98.6 2.3E-06 7.9E-11 76.1 15.8 187 208-416 18-237 (282)
143 2vyi_A SGTA protein; chaperone 98.5 1.8E-06 6.1E-11 67.5 13.3 120 195-333 11-130 (131)
144 1p5q_A FKBP52, FK506-binding p 98.5 2.4E-06 8.2E-11 79.6 16.2 130 246-379 146-292 (336)
145 3gyz_A Chaperone protein IPGC; 98.5 2.8E-06 9.6E-11 68.7 14.5 99 282-382 36-134 (151)
146 2vgx_A Chaperone SYCD; alterna 98.5 1.1E-06 3.7E-11 71.1 11.6 96 283-380 22-117 (148)
147 3dss_A Geranylgeranyl transfer 98.5 8.6E-05 3E-09 67.9 25.3 235 247-490 26-307 (331)
148 2fbn_A 70 kDa peptidylprolyl i 98.5 2.8E-07 9.6E-12 78.8 8.3 132 246-379 37-184 (198)
149 1elw_A TPR1-domain of HOP; HOP 98.5 8.8E-06 3E-10 62.1 15.7 98 247-346 4-101 (118)
150 2xcb_A PCRH, regulatory protei 98.5 1.6E-06 5.5E-11 69.5 11.3 99 246-346 17-115 (142)
151 1p5q_A FKBP52, FK506-binding p 98.4 3.2E-06 1.1E-10 78.7 14.8 145 195-344 146-292 (336)
152 2uy1_A Cleavage stimulation fa 98.4 0.00019 6.4E-09 70.4 27.8 83 177-276 30-118 (493)
153 4b4t_Q 26S proteasome regulato 98.4 3.3E-05 1.1E-09 74.5 21.4 197 254-450 11-243 (434)
154 3upv_A Heat shock protein STI1 98.4 1.3E-05 4.4E-10 62.5 14.7 97 247-345 4-100 (126)
155 1elw_A TPR1-domain of HOP; HOP 98.4 1.5E-05 5.2E-10 60.7 14.6 110 196-324 4-113 (118)
156 3upv_A Heat shock protein STI1 98.4 1.3E-05 4.4E-10 62.5 14.0 98 282-381 4-101 (126)
157 4b4t_Q 26S proteasome regulato 98.4 2.6E-05 8.9E-10 75.3 19.2 164 249-412 57-241 (434)
158 3sz7_A HSC70 cochaperone (SGT) 98.3 1.2E-05 4E-10 66.1 14.4 99 281-381 10-108 (164)
159 4gcn_A Protein STI-1; structur 98.3 7.7E-06 2.6E-10 64.0 12.4 97 248-345 9-111 (127)
160 4gcn_A Protein STI-1; structur 98.3 9.7E-06 3.3E-10 63.5 12.8 109 282-393 8-122 (127)
161 1elr_A TPR2A-domain of HOP; HO 98.3 7.8E-06 2.7E-10 63.8 11.8 109 247-358 4-118 (131)
162 3dss_A Geranylgeranyl transfer 98.3 0.00076 2.6E-08 61.7 26.3 234 207-466 40-317 (331)
163 2kck_A TPR repeat; tetratricop 98.3 7.6E-06 2.6E-10 61.8 11.2 94 250-345 9-105 (112)
164 3q49_B STIP1 homology and U bo 98.3 1.9E-05 6.5E-10 62.4 13.8 95 283-379 10-104 (137)
165 2fbn_A 70 kDa peptidylprolyl i 98.3 1E-05 3.5E-10 68.9 13.0 148 196-346 38-186 (198)
166 3sz7_A HSC70 cochaperone (SGT) 98.3 2E-05 6.9E-10 64.7 14.4 101 244-346 8-108 (164)
167 2dba_A Smooth muscle cell asso 98.3 2.7E-05 9.1E-10 62.3 14.9 111 244-358 25-139 (148)
168 2kck_A TPR repeat; tetratricop 98.3 1E-05 3.4E-10 61.2 11.7 100 281-382 5-107 (112)
169 3q49_B STIP1 homology and U bo 98.3 2.2E-05 7.4E-10 62.0 14.0 101 244-346 6-106 (137)
170 2xcb_A PCRH, regulatory protei 98.3 1.9E-05 6.5E-10 63.1 13.5 97 283-381 19-115 (142)
171 1elr_A TPR2A-domain of HOP; HO 98.3 8.2E-06 2.8E-10 63.7 11.2 113 196-327 4-122 (131)
172 2dba_A Smooth muscle cell asso 98.2 5.6E-05 1.9E-09 60.3 15.5 115 195-325 27-141 (148)
173 3ro3_A PINS homolog, G-protein 98.2 1.2E-05 4E-10 65.4 11.4 135 246-380 8-157 (164)
174 3ro3_A PINS homolog, G-protein 98.2 1.5E-05 5.1E-10 64.7 11.5 63 425-487 91-158 (164)
175 1hxi_A PEX5, peroxisome target 98.2 2E-05 6.9E-10 61.0 10.9 94 250-345 20-113 (121)
176 1hxi_A PEX5, peroxisome target 98.1 2.8E-05 9.7E-10 60.1 11.2 97 284-382 19-115 (121)
177 2xev_A YBGF; tetratricopeptide 98.1 0.00016 5.6E-09 56.1 15.2 92 253-346 8-105 (129)
178 1wao_1 Serine/threonine protei 98.1 1.3E-05 4.3E-10 78.6 10.0 124 250-376 9-134 (477)
179 1ihg_A Cyclophilin 40; ppiase 98.1 5.6E-05 1.9E-09 71.2 14.0 98 247-345 223-335 (370)
180 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 5.2E-05 1.8E-09 73.8 14.2 123 246-372 267-405 (457)
181 1wao_1 Serine/threonine protei 98.0 1.2E-05 3.9E-10 78.8 9.2 122 201-341 11-134 (477)
182 2xev_A YBGF; tetratricopeptide 98.0 0.00014 4.8E-09 56.5 13.9 93 287-381 7-105 (129)
183 3k9i_A BH0479 protein; putativ 98.0 1.9E-05 6.4E-10 60.7 8.1 86 260-346 3-90 (117)
184 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 8.2E-05 2.8E-09 72.4 14.4 145 262-409 249-407 (457)
185 3k9i_A BH0479 protein; putativ 98.0 1.3E-05 4.6E-10 61.6 7.2 84 296-380 4-89 (117)
186 3rkv_A Putative peptidylprolyl 98.0 0.00013 4.4E-09 59.6 13.4 100 246-346 10-126 (162)
187 1ihg_A Cyclophilin 40; ppiase 98.0 7.4E-05 2.5E-09 70.4 13.0 138 197-338 224-362 (370)
188 3rkv_A Putative peptidylprolyl 98.0 0.00012 4.2E-09 59.7 12.6 100 282-382 11-127 (162)
189 2if4_A ATFKBP42; FKBP-like, al 97.9 3.7E-05 1.3E-09 71.6 9.5 148 246-414 178-326 (338)
190 1dce_A Protein (RAB geranylger 97.9 0.00037 1.3E-08 69.5 16.9 173 177-370 45-244 (567)
191 1dce_A Protein (RAB geranylger 97.8 0.0011 3.7E-08 66.2 19.5 173 210-403 43-242 (567)
192 1klx_A Cysteine rich protein B 97.8 0.0002 6.8E-09 56.8 11.4 111 261-382 9-127 (138)
193 2hr2_A Hypothetical protein; a 97.8 0.00029 9.9E-09 56.5 12.1 61 319-380 59-130 (159)
194 2hr2_A Hypothetical protein; a 97.8 0.00034 1.2E-08 56.1 12.2 98 246-346 10-131 (159)
195 2if4_A ATFKBP42; FKBP-like, al 97.8 9.3E-05 3.2E-09 68.8 9.8 149 196-381 179-328 (338)
196 3n71_A Histone lysine methyltr 97.8 0.00011 3.9E-09 71.5 10.7 124 257-380 319-463 (490)
197 1klx_A Cysteine rich protein B 97.6 0.0024 8.3E-08 50.4 14.9 109 177-312 11-127 (138)
198 3n71_A Histone lysine methyltr 97.6 0.00034 1.2E-08 68.1 11.6 125 327-451 319-463 (490)
199 2l6j_A TPR repeat-containing p 97.6 9.9E-05 3.4E-09 55.6 6.3 60 285-345 7-66 (111)
200 2l6j_A TPR repeat-containing p 97.6 5.7E-05 1.9E-09 57.0 4.8 93 246-341 3-102 (111)
201 2kat_A Uncharacterized protein 97.6 0.00066 2.3E-08 51.5 10.8 64 246-310 18-81 (115)
202 2kat_A Uncharacterized protein 97.6 0.00035 1.2E-08 53.1 9.1 78 301-380 4-81 (115)
203 1na3_A Designed protein CTPR2; 97.5 0.0011 3.8E-08 47.5 10.5 63 247-310 9-71 (91)
204 1na3_A Designed protein CTPR2; 97.5 0.0013 4.5E-08 47.1 10.8 84 281-366 8-91 (91)
205 1zu2_A Mitochondrial import re 97.4 0.00056 1.9E-08 54.7 7.6 108 177-310 18-146 (158)
206 1zu2_A Mitochondrial import re 97.3 0.00053 1.8E-08 54.9 7.4 98 208-325 14-132 (158)
207 3ma5_A Tetratricopeptide repea 97.2 0.0018 6.2E-08 47.7 9.0 64 316-380 6-69 (100)
208 3ma5_A Tetratricopeptide repea 97.2 0.002 6.8E-08 47.5 8.6 64 281-345 6-69 (100)
209 3ly7_A Transcriptional activat 97.1 0.023 8E-07 52.2 16.8 155 154-355 190-346 (372)
210 3mkq_A Coatomer beta'-subunit; 97.1 0.039 1.3E-06 57.7 20.3 76 251-344 633-708 (814)
211 3ly7_A Transcriptional activat 97.1 0.014 4.6E-07 53.8 14.4 153 192-391 190-347 (372)
212 3qww_A SET and MYND domain-con 96.7 0.0045 1.5E-07 59.2 8.4 63 318-380 341-410 (433)
213 3qwp_A SET and MYND domain-con 96.7 0.0095 3.3E-07 57.0 10.5 92 289-380 294-399 (429)
214 3mkq_A Coatomer beta'-subunit; 96.6 0.13 4.5E-06 53.6 20.1 154 166-377 607-761 (814)
215 3qww_A SET and MYND domain-con 96.6 0.0045 1.6E-07 59.1 8.1 85 331-415 312-410 (433)
216 2kc7_A BFR218_protein; tetratr 96.6 0.0056 1.9E-07 44.6 6.8 53 292-345 10-63 (99)
217 3qwp_A SET and MYND domain-con 96.6 0.0073 2.5E-07 57.8 9.2 87 329-415 299-399 (429)
218 2kc7_A BFR218_protein; tetratr 96.5 0.0091 3.1E-07 43.4 7.5 81 253-343 6-87 (99)
219 1wy6_A Hypothetical protein ST 96.4 0.22 7.6E-06 37.9 13.9 140 328-490 18-157 (172)
220 1pc2_A Mitochondria fission pr 96.1 0.044 1.5E-06 43.2 9.8 85 368-457 14-103 (152)
221 3u64_A Protein TP_0956; tetrat 96.0 0.29 1E-05 43.2 15.1 93 298-392 179-282 (301)
222 3bee_A Putative YFRE protein; 95.9 0.07 2.4E-06 38.4 9.2 65 195-276 5-72 (93)
223 3bee_A Putative YFRE protein; 95.9 0.13 4.3E-06 37.0 10.6 67 315-382 4-73 (93)
224 3mkq_B Coatomer subunit alpha; 95.4 0.84 2.9E-05 37.0 15.6 129 204-378 13-141 (177)
225 2v5f_A Prolyl 4-hydroxylase su 95.4 0.15 5.2E-06 37.4 9.9 60 286-345 9-74 (104)
226 2v5f_A Prolyl 4-hydroxylase su 95.4 0.11 3.8E-06 38.2 9.1 71 386-458 4-79 (104)
227 1wy6_A Hypothetical protein ST 95.4 0.64 2.2E-05 35.5 14.4 132 258-411 18-149 (172)
228 4h7y_A Dual specificity protei 95.3 0.086 2.9E-06 41.1 8.2 33 349-381 10-48 (161)
229 1pc2_A Mitochondria fission pr 95.3 0.24 8.4E-06 39.0 11.0 87 177-282 14-104 (152)
230 3mkq_B Coatomer subunit alpha; 95.2 0.97 3.3E-05 36.6 15.3 99 292-411 15-113 (177)
231 4b4t_P 26S proteasome regulato 94.5 3.5 0.00012 39.3 19.4 238 243-482 52-319 (445)
232 3u64_A Protein TP_0956; tetrat 94.4 0.53 1.8E-05 41.5 11.8 111 246-358 153-283 (301)
233 1nzn_A CGI-135 protein, fissio 94.3 0.33 1.1E-05 36.8 9.0 68 421-489 33-105 (126)
234 1y8m_A FIS1; mitochondria, unk 93.4 1.9 6.4E-05 33.3 11.8 21 431-451 85-105 (144)
235 3o48_A Mitochondria fission 1 92.9 1.1 3.6E-05 34.2 9.5 22 429-450 84-105 (134)
236 4h7y_A Dual specificity protei 92.7 1.3 4.6E-05 34.5 10.0 100 246-347 12-124 (161)
237 1nzn_A CGI-135 protein, fissio 91.8 1.5 5.2E-05 33.1 9.4 86 294-381 13-103 (126)
238 4b4t_P 26S proteasome regulato 91.8 9.2 0.00031 36.4 20.0 190 260-451 29-246 (445)
239 4gns_B Protein CSD3, chitin bi 91.0 1.4 4.8E-05 44.9 11.0 50 433-484 347-397 (754)
240 2ff4_A Probable regulatory pro 90.6 1.2 4E-05 41.8 9.6 55 288-343 177-231 (388)
241 4fhn_B Nucleoporin NUP120; pro 90.5 6.7 0.00023 42.6 16.6 146 253-405 818-989 (1139)
242 4gns_B Protein CSD3, chitin bi 90.2 3.9 0.00013 41.6 13.4 126 250-378 251-397 (754)
243 2ff4_A Probable regulatory pro 90.0 1.5 5.1E-05 41.0 9.8 72 248-320 172-248 (388)
244 3lvg_A Clathrin heavy chain 1; 89.7 0.0028 9.7E-08 59.7 -8.9 121 315-442 197-323 (624)
245 4ady_A RPN2, 26S proteasome re 88.6 26 0.00089 36.6 23.3 152 256-414 499-656 (963)
246 4fhn_B Nucleoporin NUP120; pro 88.2 8.3 0.00028 41.8 15.2 148 322-477 817-990 (1139)
247 3txn_A 26S proteasome regulato 87.6 18 0.00061 33.6 20.4 168 247-415 19-209 (394)
248 3txn_A 26S proteasome regulato 86.9 20 0.00067 33.3 23.4 242 199-459 22-290 (394)
249 1v54_E Cytochrome C oxidase po 84.4 8.1 0.00028 27.7 8.2 63 402-466 25-87 (109)
250 1v54_E Cytochrome C oxidase po 83.5 10 0.00035 27.2 9.3 63 262-325 25-87 (109)
251 3o48_A Mitochondria fission 1 83.4 7.6 0.00026 29.5 8.4 66 163-228 45-110 (134)
252 3ffl_A Anaphase-promoting comp 82.8 10 0.00035 30.2 9.2 69 242-310 13-91 (167)
253 1y8m_A FIS1; mitochondria, unk 81.6 16 0.00056 28.1 11.4 72 157-228 38-109 (144)
254 3lvg_A Clathrin heavy chain 1; 81.2 0.21 7.2E-06 47.4 -1.0 228 104-372 82-324 (624)
255 3ffl_A Anaphase-promoting comp 80.6 13 0.00043 29.6 9.0 59 322-380 25-91 (167)
256 4b4t_R RPN7, 26S proteasome re 79.1 23 0.00078 33.4 12.3 99 248-346 132-237 (429)
257 3esl_A Checkpoint serine/threo 78.5 27 0.00091 28.8 11.3 55 331-385 93-148 (202)
258 2p58_C Putative type III secre 78.3 16 0.00055 26.1 8.3 50 327-382 50-99 (116)
259 2y69_E Cytochrome C oxidase su 78.1 20 0.0007 27.2 9.3 60 265-325 71-130 (152)
260 2p58_C Putative type III secre 77.7 17 0.00057 26.0 8.1 86 262-356 22-107 (116)
261 2y69_E Cytochrome C oxidase su 77.5 16 0.00055 27.8 8.2 62 403-466 69-130 (152)
262 2uwj_G Type III export protein 77.4 15 0.00053 26.2 7.6 50 327-382 49-98 (115)
263 1zbp_A Hypothetical protein VP 77.3 6.6 0.00023 34.1 7.1 116 168-311 7-129 (273)
264 4b4t_R RPN7, 26S proteasome re 76.5 24 0.0008 33.3 11.6 97 284-380 133-236 (429)
265 4ady_A RPN2, 26S proteasome re 76.1 80 0.0028 33.1 27.0 183 178-380 471-657 (963)
266 1zbp_A Hypothetical protein VP 75.6 40 0.0014 29.3 13.9 55 326-381 6-60 (273)
267 2uwj_G Type III export protein 75.6 16 0.00054 26.1 7.2 86 262-356 21-106 (115)
268 3lpz_A GET4 (YOR164C homolog); 74.1 50 0.0017 29.7 20.4 81 386-486 135-215 (336)
269 3esl_A Checkpoint serine/threo 73.3 34 0.0012 28.1 10.0 55 401-456 93-148 (202)
270 4g8k_A 2-5A-dependent ribonucl 71.2 17 0.00057 32.8 8.9 106 371-492 218-328 (337)
271 1wdy_A 2-5A-dependent ribonucl 71.0 22 0.00076 30.6 9.5 49 164-219 8-59 (285)
272 2wpv_A GET4, UPF0363 protein Y 66.4 72 0.0025 28.4 21.0 167 286-487 37-217 (312)
273 1wdy_A 2-5A-dependent ribonucl 65.0 6.5 0.00022 34.2 4.6 17 253-269 8-24 (285)
274 3kea_A K1L; tropism, ANK repea 64.6 28 0.00095 30.5 8.7 47 167-220 37-83 (285)
275 3eiq_C Programmed cell death p 62.5 93 0.0032 28.4 12.2 77 390-468 220-298 (358)
276 1k1a_A B-cell lymphoma 3-encod 62.3 32 0.0011 28.8 8.5 86 254-343 13-102 (241)
277 4a1g_A Mitotic checkpoint seri 61.5 56 0.0019 25.5 9.8 50 336-385 84-134 (152)
278 2wpv_A GET4, UPF0363 protein Y 60.4 93 0.0032 27.7 25.2 25 316-340 133-157 (312)
279 4a1g_A Mitotic checkpoint seri 54.9 73 0.0025 24.8 9.6 50 442-491 84-134 (152)
280 1k1a_A B-cell lymphoma 3-encod 54.5 21 0.00071 30.0 5.9 184 288-491 12-209 (241)
281 3eu9_A Huntingtin-interacting 54.1 14 0.00047 31.0 4.6 206 256-488 15-237 (240)
282 3t8k_A Uncharacterized protein 53.9 50 0.0017 26.6 7.9 91 257-351 13-108 (186)
283 2wvi_A Mitotic checkpoint seri 53.6 81 0.0028 24.9 9.5 50 336-385 79-129 (164)
284 2d2s_A Exocyst complex compone 53.0 1E+02 0.0036 26.0 9.9 90 252-344 23-118 (235)
285 3eiq_C Programmed cell death p 52.5 81 0.0028 28.7 9.5 64 426-490 220-285 (358)
286 1qsa_A Protein (soluble lytic 52.5 1.9E+02 0.0064 28.7 25.8 226 246-486 101-347 (618)
287 2r9g_A AAA ATPase, central reg 51.3 1E+02 0.0034 25.3 10.0 17 296-312 28-44 (204)
288 2r9g_A AAA ATPase, central reg 50.0 1.1E+02 0.0036 25.2 9.7 65 251-316 15-87 (204)
289 4aez_C MAD3, mitotic spindle c 49.2 56 0.0019 27.4 7.2 52 404-456 131-183 (223)
290 4fke_A Aminopeptidase N; zinc 48.6 2.6E+02 0.0089 29.3 17.3 24 286-309 762-785 (909)
291 3eu9_A Huntingtin-interacting 48.3 44 0.0015 27.7 7.0 38 183-220 24-63 (240)
292 1wgl_A TOLL-interacting protei 47.0 19 0.00066 22.8 3.2 25 470-494 35-59 (59)
293 2wvi_A Mitotic checkpoint seri 47.0 1.1E+02 0.0036 24.3 10.0 52 406-458 79-131 (164)
294 3ctd_A Putative ATPase, AAA fa 44.5 1.3E+02 0.0046 24.8 8.5 64 250-313 35-106 (213)
295 3ctd_A Putative ATPase, AAA fa 43.9 1.4E+02 0.0047 24.7 9.6 71 285-355 35-113 (213)
296 3bge_A Predicted ATPase; struc 43.7 1.3E+02 0.0045 24.5 9.6 33 296-328 21-53 (201)
297 3e3v_A Regulatory protein RECX 43.6 1.2E+02 0.0042 24.2 10.7 48 335-383 51-98 (177)
298 4ets_A Ferric uptake regulatio 42.2 60 0.002 25.6 6.2 68 404-472 14-83 (162)
299 2nsz_A Programmed cell death p 42.0 1.1E+02 0.0037 23.0 8.0 24 321-344 11-34 (129)
300 4aez_C MAD3, mitotic spindle c 41.9 93 0.0032 26.0 7.4 51 335-385 132-183 (223)
301 3bge_A Predicted ATPase; struc 41.1 1.5E+02 0.005 24.3 8.9 62 251-312 8-77 (201)
302 2zu6_B Programmed cell death p 41.1 1.9E+02 0.0065 25.6 10.6 25 250-274 6-30 (307)
303 3t8k_A Uncharacterized protein 41.0 82 0.0028 25.3 7.2 100 252-351 40-148 (186)
304 2d2s_A Exocyst complex compone 40.4 1.2E+02 0.004 25.7 8.1 21 324-344 25-45 (235)
305 3lpz_A GET4 (YOR164C homolog); 38.2 2.2E+02 0.0076 25.5 26.6 24 198-221 37-60 (336)
306 2ion_A PDCD4, programmed cell 37.9 96 0.0033 24.1 6.7 23 321-343 13-35 (152)
307 2zu6_B Programmed cell death p 37.8 2.2E+02 0.0074 25.3 10.4 24 356-379 170-193 (307)
308 2ion_A PDCD4, programmed cell 36.6 1.5E+02 0.0051 23.0 8.3 63 249-312 11-75 (152)
309 3ltj_A Alpharep-4; protein eng 36.1 1.7E+02 0.0056 23.4 19.6 110 246-367 27-136 (201)
310 3pvs_A Replication-associated 35.5 2.9E+02 0.0098 26.0 14.7 54 329-382 267-325 (447)
311 2fe3_A Peroxide operon regulat 35.2 1.1E+02 0.0039 23.4 6.7 60 413-473 12-71 (145)
312 2yru_A Steroid receptor RNA ac 35.2 1.3E+02 0.0046 22.1 6.9 43 182-224 47-89 (118)
313 2rfa_A Transient receptor pote 35.0 1.4E+02 0.0048 24.5 8.1 19 203-221 41-59 (232)
314 2xig_A Ferric uptake regulatio 33.5 1.1E+02 0.0038 23.6 6.5 61 412-473 16-76 (150)
315 2ijq_A Hypothetical protein; s 33.4 1.8E+02 0.006 22.9 8.3 51 260-310 45-103 (161)
316 2ijq_A Hypothetical protein; s 33.4 1.8E+02 0.006 22.9 8.3 12 401-412 46-57 (161)
317 2fe3_A Peroxide operon regulat 32.6 1.5E+02 0.0051 22.7 7.0 39 291-329 30-68 (145)
318 3mv2_A Coatomer subunit alpha; 32.4 2.7E+02 0.0092 24.8 11.3 41 413-453 195-237 (325)
319 3jxi_A Vanilloid receptor-rela 32.3 21 0.00072 30.5 2.3 55 254-308 9-72 (260)
320 1ug3_A EIF4GI, eukaryotic prot 32.1 1.7E+02 0.0059 26.3 8.4 63 250-313 14-77 (339)
321 3hra_A Ankyrin repeat family p 31.3 53 0.0018 26.4 4.6 15 443-457 158-172 (201)
322 3ltm_A Alpha-REP4; protein eng 30.6 2.1E+02 0.0072 23.0 20.6 79 246-332 32-110 (211)
323 3jxi_A Vanilloid receptor-rela 30.1 13 0.00046 31.8 0.6 190 288-487 8-251 (260)
324 3pvs_A Replication-associated 29.9 3.5E+02 0.012 25.4 12.1 46 287-332 257-305 (447)
325 3eyy_A Putative iron uptake re 29.9 1.3E+02 0.0044 23.1 6.2 58 413-472 9-66 (145)
326 1n11_A Ankyrin; clathrin, BAND 29.8 73 0.0025 29.6 5.8 38 183-220 29-68 (437)
327 4gq2_M Nucleoporin NUP120; bet 29.3 4E+02 0.014 28.0 11.8 48 425-472 899-950 (950)
328 4fke_A Aminopeptidase N; zinc 28.3 5.3E+02 0.018 26.9 17.9 88 252-344 691-785 (909)
329 1oyz_A Hypothetical protein YI 27.9 2.8E+02 0.0096 23.5 21.2 209 253-486 43-262 (280)
330 3ljn_A Hypothetical protein; a 27.7 1.8E+02 0.0063 26.0 8.0 218 251-483 21-266 (364)
331 3bu8_A Telomeric repeat-bindin 27.7 2.6E+02 0.009 23.2 7.6 24 288-311 120-143 (235)
332 2f6m_A Suppressor protein STP2 27.7 83 0.0028 20.4 3.8 36 321-357 6-41 (65)
333 3b7b_A Euchromatic histone-lys 27.3 58 0.002 27.0 4.2 207 254-487 15-236 (237)
334 2nsz_A Programmed cell death p 27.1 2E+02 0.0067 21.5 10.0 25 250-274 10-34 (129)
335 3aji_A 26S proteasome non-ATPa 27.1 1.2E+02 0.0043 24.7 6.3 180 253-457 9-199 (231)
336 1mzb_A Ferric uptake regulatio 25.7 1.5E+02 0.0052 22.2 5.9 33 334-366 35-67 (136)
337 2rfa_A Transient receptor pote 25.4 2.2E+02 0.0075 23.2 7.6 53 431-484 159-220 (232)
338 1zl8_A LIN-7; heterodimer, alp 24.8 1.2E+02 0.0041 18.3 4.8 43 177-221 9-51 (53)
339 3d5l_A Regulatory protein RECX 24.8 3E+02 0.01 22.8 11.5 50 334-384 93-142 (221)
340 3eyy_A Putative iron uptake re 24.7 1.4E+02 0.005 22.7 5.7 30 299-328 34-63 (145)
341 2b7e_A PRE-mRNA processing pro 24.5 58 0.002 20.6 2.6 29 264-292 3-31 (59)
342 3hra_A Ankyrin repeat family p 24.3 1E+02 0.0034 24.6 5.1 14 478-491 158-171 (201)
343 1mzb_A Ferric uptake regulatio 23.9 2.1E+02 0.0073 21.4 6.5 58 414-472 9-67 (136)
344 4b4t_S RPN3, 26S proteasome re 23.6 5E+02 0.017 25.0 12.3 66 246-311 230-299 (523)
345 3mkr_B Coatomer subunit alpha; 23.5 3.9E+02 0.013 23.7 13.1 95 397-491 112-231 (320)
346 4gq2_M Nucleoporin NUP120; bet 23.1 5.3E+02 0.018 27.1 11.3 49 318-366 898-950 (950)
347 3rjo_A Endoplasmic reticulum a 23.1 4.5E+02 0.015 24.3 18.4 26 164-189 203-228 (419)
348 3kea_A K1L; tropism, ANK repea 23.1 1.6E+02 0.0056 25.3 6.5 205 260-492 9-222 (285)
349 2fu4_A Ferric uptake regulatio 23.0 1.7E+02 0.0058 19.4 6.2 30 370-399 35-64 (83)
350 4b4t_S RPN3, 26S proteasome re 22.7 5.2E+02 0.018 24.9 13.6 61 283-346 232-299 (523)
351 1wty_A Hypothetical protein TT 22.3 1.7E+02 0.0059 21.4 5.5 11 333-343 4-14 (119)
352 2w57_A Ferric uptake regulatio 22.3 1.7E+02 0.0059 22.5 5.7 32 335-366 35-66 (150)
353 2f6m_A Suppressor protein STP2 21.6 1.7E+02 0.0059 18.9 4.7 44 250-294 5-48 (65)
354 2w57_A Ferric uptake regulatio 21.2 2.5E+02 0.0084 21.6 6.4 63 341-404 6-69 (150)
355 4ets_A Ferric uptake regulatio 20.7 1.7E+02 0.0056 23.0 5.3 59 344-403 25-85 (162)
356 2chq_A Replication factor C sm 20.4 4.2E+02 0.014 22.9 11.5 97 367-468 162-272 (319)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.9e-32 Score=276.60 Aligned_cols=380 Identities=8% Similarity=-0.030 Sum_probs=253.9
Q ss_pred hhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCC---
Q 011081 80 GLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGS--- 156 (494)
Q Consensus 80 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 156 (494)
...++++.|+.+|..+... .|+..++..++.+|.+.|++++|..+++.+... ..+...+..+..+|.++|.
T Consensus 95 ~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~ 168 (597)
T 2xpi_A 95 LMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQG 168 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHH
Confidence 3456788888888887632 467788888889999999999999988887542 3456777777777776652
Q ss_pred ------------------------------ChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCC-------------
Q 011081 157 ------------------------------APFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLS------------- 193 (494)
Q Consensus 157 ------------------------------~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~------------- 193 (494)
+..+|+.++.+|.+.|+ +++|+++|++|.+.+..
T Consensus 169 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 245 (597)
T 2xpi_A 169 ALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN---FDRAKECYKEALMVDAKCYEAFDQLVSNHL 245 (597)
T ss_dssp HHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCchhhHHHHHHHHhhc
Confidence 14578888889999998 88888888888765432
Q ss_pred ---------------------------------------------------------cChHhHHHHHHHHHcCCChhHHH
Q 011081 194 ---------------------------------------------------------VKVSTCNALIWEVSRGKGVISGY 216 (494)
Q Consensus 194 ---------------------------------------------------------~~~~~~~~ll~~~~~~~~~~~a~ 216 (494)
++..+++.++.+|.+.|++++|.
T Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 325 (597)
T 2xpi_A 246 LTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVL 325 (597)
T ss_dssp SCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHH
Confidence 23334444444444444444444
Q ss_pred HHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcC
Q 011081 217 EIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEER 296 (494)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 296 (494)
++|+++.+.++ .+..+|+.++.+|.+.|++++|..+++++.+.. +.+..+|+.++.+|.+.|
T Consensus 326 ~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 387 (597)
T 2xpi_A 326 AITTKILEIDP-----------------YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVN 387 (597)
T ss_dssp HHHHHHHHHCT-----------------TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCc-----------------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhc
Confidence 44444433221 144445555555555555555555555555432 345666777777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011081 297 RMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYN 376 (494)
Q Consensus 297 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 376 (494)
++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+
T Consensus 388 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 465 (597)
T 2xpi_A 388 KISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQ 465 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777777776543 3356677777777777777777777777776654 4466677777777777777777777777
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 377 DMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKF---GLFPT--EKSYMFLIKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 377 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (494)
++.+.. +.+..+|+.++..|.+.|++++|.++|++++... +..|+ ..+|..++.+|.+.|++++|.++|+++.+
T Consensus 466 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 466 SSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 776653 3356677777777777777777777777554432 44565 56777777777777777777777777776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 452 KGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 452 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
.+ +.+..+|..+..+|.+.|++++|.++++++.+.++.
T Consensus 545 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 545 LS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 53 336777777777777777777777777777775543
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-31 Score=271.66 Aligned_cols=376 Identities=11% Similarity=0.048 Sum_probs=318.8
Q ss_pred CCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcC----------------CChhhHHHHH
Q 011081 102 KHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECG----------------SAPFVFDLLI 165 (494)
Q Consensus 102 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~~~~~li 165 (494)
.++...|+.++..+.+.|++++|..+++.+.... ++...+..+...|...| +++.+++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 157 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT---GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAA 157 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC---CCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHH
Confidence 3578899999999999999999999999998632 33455555666655544 4678899999
Q ss_pred HHHHhcCChhcHHHHHHHHHHHHhC---------------CCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccc
Q 011081 166 KCCLEVKNIEKIETCVDIVRMLMSR---------------GLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDAT 230 (494)
Q Consensus 166 ~~~~~~~~~~~~~~a~~~~~~m~~~---------------g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 230 (494)
.+|.+.|+ +++|+++|+++... |...+..+|+.++.+|.+.|++++|.++|+++...++...
T Consensus 158 ~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 234 (597)
T 2xpi_A 158 FCLVKLYD---WQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCY 234 (597)
T ss_dssp HHHHHTTC---HHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhh---HHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhh
Confidence 99999999 99999999853221 2234688999999999999999999999999987665411
Q ss_pred cc---------------------------------------------c---c--cccc----cccccccCHHHHHHHHHH
Q 011081 231 AG---------------------------------------------I---G--KDVK----RVVRVRPNVHTFNALMVG 256 (494)
Q Consensus 231 ~~---------------------------------------------~---~--~~~~----~~~~~~p~~~~~~~li~~ 256 (494)
.. . + .++. +.....++..+|+.++.+
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHH
Confidence 00 0 0 0111 112335899999999999
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHH
Q 011081 257 FYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARA 336 (494)
Q Consensus 257 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 336 (494)
|.+.|++++|+++|+++.+.+ +.+..+++.++.+|.+.|++++|.++++++.+.. +.+..+|+.++.+|.+.|++++|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHH
Confidence 999999999999999999876 4478899999999999999999999999998664 56789999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 011081 337 EEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVK 416 (494)
Q Consensus 337 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 416 (494)
.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|++++..
T Consensus 393 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 393 RRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999998764 5678899999999999999999999999999875 457889999999999999999999999977665
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 417 FGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK----GFEPS--LEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 417 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.++
T Consensus 471 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 471 F--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp C--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred C--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 4 347889999999999999999999999999876 67888 88999999999999999999999999998765
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.6e-32 Score=270.07 Aligned_cols=204 Identities=15% Similarity=0.161 Sum_probs=130.4
Q ss_pred HHHHHHHHHHcCCCcCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC---------HHH
Q 011081 266 VEDVWVEMARLGCEPDC-YSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGE---------MAR 335 (494)
Q Consensus 266 a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~~~ 335 (494)
+..+.+++.+.+..+.. ..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 44455555555544332 34566666666666666666666666666666666666666666665443 466
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 336 AEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVV 415 (494)
Q Consensus 336 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 415 (494)
|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+ .|.
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~-~M~ 167 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA-HMV 167 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH-HHH
Confidence 7777777777777777777777777777777777777777777777777777777777777777777777777776 455
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011081 416 KFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMK 470 (494)
Q Consensus 416 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 470 (494)
+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6677777777777777777777777777777777777777777777777766654
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.7e-32 Score=269.80 Aligned_cols=208 Identities=13% Similarity=0.125 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHHhCCCCcChH-hHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHH
Q 011081 177 IETCVDIVRMLMSRGLSVKVS-TCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMV 255 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~ 255 (494)
...+..+.+.+.+.+....+. .++.+|++|++.|++++|+++|++|.+ .|++||..|||+||.
T Consensus 6 ~s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~----------------~Gv~pd~~tyn~Li~ 69 (501)
T 4g26_A 6 ASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARR----------------NGVQLSQYHYNVLLY 69 (501)
T ss_dssp ------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH----------------HTCCCCHHHHHHHHH
T ss_pred cchHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----------------cCCCCCHhHHHHHHH
Confidence 345566667777777765553 578889999999999999999999965 567899999999999
Q ss_pred HHHhcCC---------HhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011081 256 GFYREGA---------FEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG 326 (494)
Q Consensus 256 ~~~~~g~---------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 326 (494)
+|++.+. +++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+||++|.+
T Consensus 70 ~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~ 149 (501)
T 4g26_A 70 VCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFG 149 (501)
T ss_dssp HHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHH
Confidence 9987664 6889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 011081 327 FCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDK 400 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 400 (494)
|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 150 ~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 150 FCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998864
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=5.3e-26 Score=219.17 Aligned_cols=361 Identities=15% Similarity=0.075 Sum_probs=311.4
Q ss_pred hhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChh
Q 011081 80 GLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPF 159 (494)
Q Consensus 80 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (494)
...++++.|++.|..+.... +.+...+..+...+...|++++|...++.+++ ....++.
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~-------------------~~p~~~~ 68 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK-------------------QNPLLAE 68 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HCTTCHH
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------------------cCCCchH
Confidence 34678899999988876543 34566777788888899999999999988765 2345677
Q ss_pred hHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccc
Q 011081 160 VFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKR 239 (494)
Q Consensus 160 ~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 239 (494)
+|..+..++.+.|+ +++|++.|+++.+.... +..+|..+..++.+.|++++|.+.|+++.+..|.
T Consensus 69 ~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----------- 133 (388)
T 1w3b_A 69 AYSNLGNVYKERGQ---LQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD----------- 133 (388)
T ss_dssp HHHHHHHHHHHHTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-----------
T ss_pred HHHHHHHHHHHCCC---HHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------
Confidence 89999999999999 99999999999986432 5678999999999999999999999999876543
Q ss_pred ccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhH
Q 011081 240 VVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVA 319 (494)
Q Consensus 240 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 319 (494)
+...+..+...+...|++++|.++|+++.+.. +-+..+|..+...+.+.|++++|...|+++.+.+ +.+...
T Consensus 134 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 205 (388)
T 1w3b_A 134 ------LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDA 205 (388)
T ss_dssp ------CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred ------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHH
Confidence 56778889999999999999999999998874 4457889999999999999999999999998875 446788
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 011081 320 YNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCD 399 (494)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 399 (494)
|..+...+...|++++|...|++..+.. +.+..++..+...|.+.|++++|.+.|+++.+.+ +.+..++..+...+.+
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998764 4568899999999999999999999999999875 3356789999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011081 400 KRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATM 479 (494)
Q Consensus 400 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 479 (494)
.|++++|.+.+++.+... +.+..++..+...+.+.|++++|.+.++++.+. .+.+..++..+..+|.+.|++++|.+
T Consensus 284 ~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999777654 457889999999999999999999999999865 24458899999999999999999999
Q ss_pred HHHHHHHccc
Q 011081 480 LRKEMFENQV 489 (494)
Q Consensus 480 ~~~~m~~~~~ 489 (494)
.++++++..+
T Consensus 361 ~~~~a~~~~p 370 (388)
T 1w3b_A 361 HYKEAIRISP 370 (388)
T ss_dssp HHHHHHTTCT
T ss_pred HHHHHHhhCC
Confidence 9999998654
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=3.3e-24 Score=206.57 Aligned_cols=345 Identities=14% Similarity=0.074 Sum_probs=295.8
Q ss_pred HHhhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCC
Q 011081 78 ALGLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSA 157 (494)
Q Consensus 78 ~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 157 (494)
+....++.+.|..++..+.... +.+..+|..+..++.+.|++++|...++.+++. .+.+
T Consensus 42 ~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------------------~p~~ 100 (388)
T 1w3b_A 42 IHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL-------------------KPDF 100 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------------CTTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------------------Ccch
Confidence 3445678899999998876544 567889999999999999999999999998762 2334
Q ss_pred hhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccc
Q 011081 158 PFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDV 237 (494)
Q Consensus 158 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 237 (494)
..+|..+..++.+.|+ +++|++.|+++.+.... +...+..+...+...|++++|.+.|+++....+.
T Consensus 101 ~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--------- 167 (388)
T 1w3b_A 101 IDGYINLAAALVAAGD---MEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN--------- 167 (388)
T ss_dssp HHHHHHHHHHHHHHSC---SSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT---------
T ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------
Confidence 5678889999999999 99999999999986533 5667888889999999999999999999875543
Q ss_pred ccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011081 238 KRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDV 317 (494)
Q Consensus 238 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 317 (494)
+..+|+.+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|...|++..+.. +.+.
T Consensus 168 --------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 168 --------FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp --------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred --------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 68899999999999999999999999999875 4457789999999999999999999999998764 4468
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 011081 318 VAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGEL 397 (494)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 397 (494)
.++..+..+|.+.|++++|.+.|+++.+.+ +.+..+|..+...+.+.|++++|...|+++.+.. +.+..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 899999999999999999999999999875 5567889999999999999999999999999874 55788999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 011081 398 CDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEP-SLEIYSAFIDGYMKEG 472 (494)
Q Consensus 398 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g 472 (494)
...|++++|.+.+++.+... +.+..++..+..+|.+.|++++|.+.|+++.+. .| +...|..+...+...|
T Consensus 316 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 99999999999999655432 345778999999999999999999999999964 55 4677777777776655
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=5e-22 Score=195.11 Aligned_cols=337 Identities=10% Similarity=0.056 Sum_probs=278.2
Q ss_pred CCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHH
Q 011081 102 KHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCV 181 (494)
Q Consensus 102 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~ 181 (494)
+.+...+..+...+.+.|++++|..+|+.+++. ...++.++..+..++...|+ +++|+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-------------------~p~~~~~~~~l~~~~~~~g~---~~~A~ 80 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDG-------------------DPDNYIAYYRRATVFLAMGK---SKAAL 80 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHTTC---HHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------------------CCccHHHHHHHHHHHHHCCC---HHHHH
Confidence 345677888999999999999999999998762 23457788889999999999 99999
Q ss_pred HHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCH---HHHHHH-----
Q 011081 182 DIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNV---HTFNAL----- 253 (494)
Q Consensus 182 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~l----- 253 (494)
+.|+++.+.+.. +..++..+..+|.+.|++++|.+.|+++....+. +. ..|..+
T Consensus 81 ~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~ 142 (450)
T 2y4t_A 81 PDLTKVIQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-----------------ENEEKEAQSQLIKSDE 142 (450)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-----------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----------------ChhhHHHHHHHHHHHH
Confidence 999999987644 6788999999999999999999999999876543 34 566655
Q ss_pred -------HHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011081 254 -------MVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG 326 (494)
Q Consensus 254 -------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 326 (494)
...+.+.|++++|+.+|+++.+.. +.+..++..+..+|.+.|++++|.++|+.+.+.. +.+..+|..+..+
T Consensus 143 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 220 (450)
T 2y4t_A 143 MQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTL 220 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 444899999999999999998875 4578889999999999999999999999998764 4578999999999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----hhh
Q 011081 327 FCEIGEMARAEEFFREMGLSGVESSSVTFEHL------------VNGYCRAGDVDSAILVYNDMCRKGFEPE-----GST 389 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~ 389 (494)
|.+.|++++|+..|+++.+.. +.+...+..+ ...|...|++++|...|+.+.+.. |+ ...
T Consensus 221 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~ 297 (450)
T 2y4t_A 221 YYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRS 297 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHH
Confidence 999999999999999998764 4455555554 788999999999999999998853 44 347
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHH--
Q 011081 390 IEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS-LEIYSAFID-- 466 (494)
Q Consensus 390 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~-- 466 (494)
+..+...+.+.|++++|+..+++.+... +.+...|..+..+|...|++++|.+.++++.+. .|+ ...+..+..
T Consensus 298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 373 (450)
T 2y4t_A 298 KERICHCFSKDEKPVEAIRVCSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQ 373 (450)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHH
Confidence 8888999999999999999999777653 246789999999999999999999999999964 554 566666653
Q ss_pred ----------HHHhcC-----CHHHHHHHHHH-HHHc
Q 011081 467 ----------GYMKEG-----NVEMATMLRKE-MFEN 487 (494)
Q Consensus 467 ----------~~~~~g-----~~~~a~~~~~~-m~~~ 487 (494)
.|...| +.+++.+.+++ ..+.
T Consensus 374 ~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~ 410 (450)
T 2y4t_A 374 RLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW 410 (450)
T ss_dssp HHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHS
T ss_pred HHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHh
Confidence 244444 56777888876 4443
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.3e-22 Score=199.26 Aligned_cols=310 Identities=12% Similarity=0.029 Sum_probs=262.4
Q ss_pred cCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccc
Q 011081 154 CGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGI 233 (494)
Q Consensus 154 ~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 233 (494)
...+..++..+...+.+.|+ +++|+++|+.+.+... .+..++..+..+|...|++++|.+.|+++.+.++.
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~---~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----- 92 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQ---LADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD----- 92 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----
T ss_pred cHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----
Confidence 34456778889999999999 9999999999998643 37889999999999999999999999999876543
Q ss_pred ccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC-H---hHHHHH------------HHHHHhcCC
Q 011081 234 GKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPD-C---YSYSVL------------MAVFCEERR 297 (494)
Q Consensus 234 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~---~~~~~l------------i~~~~~~g~ 297 (494)
+..+|..+...|.+.|++++|...|+++.+.. |+ . ..+..+ ...+.+.|+
T Consensus 93 ------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 93 ------------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD 158 (450)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 68899999999999999999999999998764 44 3 555555 444889999
Q ss_pred HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 298 MREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYND 377 (494)
Q Consensus 298 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 377 (494)
+++|..+|+.+.+.. +.+..++..+..+|.+.|++++|.++|+++.+.. +.+..+|..+...|...|++++|...|++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998764 5578899999999999999999999999998764 56789999999999999999999999999
Q ss_pred HHHCCCCCChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 011081 378 MCRKGFEPEGSTIEVL------------IGELCDKRRVFEALDILKARVVKFGLFPT--EKSYMFLIKGLCEEGKMEEAL 443 (494)
Q Consensus 378 m~~~~~~p~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~ 443 (494)
+.+.. +.+...+..+ ...+...|++++|...|++.+....-.+. ...|..+..++.+.|++++|.
T Consensus 237 ~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 237 CLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 98764 2234444444 78899999999999999987765432222 457888999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 444 KVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 444 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
+.++++.+.. +.+...|..+..+|...|++++|.+.++++++..+.
T Consensus 316 ~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 316 RVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 9999998652 446899999999999999999999999999986554
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=7.6e-22 Score=197.15 Aligned_cols=370 Identities=9% Similarity=-0.010 Sum_probs=303.9
Q ss_pred HhhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCCh
Q 011081 79 LGLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAP 158 (494)
Q Consensus 79 ~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (494)
....++++.|+..|..+.... |+..+|..+..++.+.|++++|...++.+++. .+.+.
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------------------~p~~~ 73 (514)
T 2gw1_A 16 FFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALEL-------------------KPDYS 73 (514)
T ss_dssp HHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------------CSCCH
T ss_pred HHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc-------------------ChHHH
Confidence 445678999999999997554 68899999999999999999999999988762 23455
Q ss_pred hhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcC-------------------------------------------
Q 011081 159 FVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVK------------------------------------------- 195 (494)
Q Consensus 159 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~------------------------------------------- 195 (494)
.++..+..++.+.|+ +++|+..|+.+.+.+...+
T Consensus 74 ~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 150 (514)
T 2gw1_A 74 KVLLRRASANEGLGK---FADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKE 150 (514)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------
T ss_pred HHHHHHHHHHHHHhh---HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhH
Confidence 778888999999999 9999999999887653110
Q ss_pred -----------------------------------hHhHHHHHHHHH---cCCChhHHHHHHHHHhc-----C--Ccccc
Q 011081 196 -----------------------------------VSTCNALIWEVS---RGKGVISGYEIYREVFG-----L--DSDAT 230 (494)
Q Consensus 196 -----------------------------------~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~-----~--~~~~~ 230 (494)
...+......+. +.|++++|...|+++.. . .+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~- 229 (514)
T 2gw1_A 151 RKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNED- 229 (514)
T ss_dssp ------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTC-
T ss_pred HHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccc-
Confidence 222233333333 37999999999999876 3 2110
Q ss_pred cccccccccccc-cccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 231 AGIGKDVKRVVR-VRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMR 309 (494)
Q Consensus 231 ~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 309 (494)
.. ...+..+|..+...+...|++++|..+|+++.+.. |+..++..+...+...|++++|...++.+.
T Consensus 230 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 297 (514)
T 2gw1_A 230 ----------EKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKAL 297 (514)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred ----------cccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 00 02357788999999999999999999999998875 448889999999999999999999999998
Q ss_pred hCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 011081 310 DKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGST 389 (494)
Q Consensus 310 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 389 (494)
+.. +.+..+|..+...|...|++++|...|+++.+.. +.+...+..+...|...|++++|...++.+.+.. +.+..+
T Consensus 298 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 374 (514)
T 2gw1_A 298 KLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEV 374 (514)
T ss_dssp TTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHH
T ss_pred hcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHH
Confidence 874 4577889999999999999999999999998875 4567789999999999999999999999998864 335678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011081 390 IEVLIGELCDKRRVFEALDILKARVVKFGLFPT----EKSYMFLIKGLCE---EGKMEEALKVQAEMVGKGFEPSLEIYS 462 (494)
Q Consensus 390 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~ 462 (494)
+..+...+...|++++|...+++.+....-.++ ...|..+...+.. .|++++|.+.++++.+.. +.+..++.
T Consensus 375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 453 (514)
T 2gw1_A 375 PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKI 453 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 889999999999999999999977665433333 3478899999999 999999999999998753 44688899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 463 AFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 463 ~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
.+...|.+.|++++|.+.+++..+.++.
T Consensus 454 ~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 454 GLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999987664
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=1.1e-19 Score=182.62 Aligned_cols=367 Identities=11% Similarity=0.038 Sum_probs=281.7
Q ss_pred HhhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCCh
Q 011081 79 LGLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAP 158 (494)
Q Consensus 79 ~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (494)
....++++.|+..|..+.... +.+..+|..+..++.+.|++++|...++.+++.. +.++
T Consensus 35 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------------p~~~ 93 (537)
T 3fp2_A 35 FFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-------------------PDHS 93 (537)
T ss_dssp HHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------------------TTCH
T ss_pred HHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------------------CchH
Confidence 445678899999999986554 4577889999999999999999999999887632 3345
Q ss_pred hhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCC-------------------------------------cChH----
Q 011081 159 FVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLS-------------------------------------VKVS---- 197 (494)
Q Consensus 159 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~-------------------------------------~~~~---- 197 (494)
.++..+..++...|+ +++|++.|+.+ ..... |+..
T Consensus 94 ~~~~~la~~~~~~g~---~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 169 (537)
T 3fp2_A 94 KALLRRASANESLGN---FTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS 169 (537)
T ss_dssp HHHHHHHHHHHHHTC---HHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH
Confidence 667777777888888 88888877533 21111 1100
Q ss_pred --------------------------hHHHHHHHHHcC--------CChhHHHHHHHHHhcCCccccccccccccccccc
Q 011081 198 --------------------------TCNALIWEVSRG--------KGVISGYEIYREVFGLDSDATAGIGKDVKRVVRV 243 (494)
Q Consensus 198 --------------------------~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (494)
....+...+... |++++|.++|+++....+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~--------------- 234 (537)
T 3fp2_A 170 FFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV--------------- 234 (537)
T ss_dssp HHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC---------------
T ss_pred HHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC---------------
Confidence 111222222211 3677888888888765543
Q ss_pred ccC-----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 011081 244 RPN-----VHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVV 318 (494)
Q Consensus 244 ~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 318 (494)
.++ ..+|..+...+...|++++|...|++..+. .|+..++..+...+...|++++|.+.++.+.+.. +.+..
T Consensus 235 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 311 (537)
T 3fp2_A 235 DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPP 311 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHH
T ss_pred cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHH
Confidence 111 345777888899999999999999999986 4668889999999999999999999999998764 45788
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELC 398 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 398 (494)
+|..+...|...|++++|.+.|+++.+.. +.+...|..+...|...|++++|...++++.+.. +.+...+..+...+.
T Consensus 312 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 312 TYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILT 389 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 99999999999999999999999998865 4556889999999999999999999999998875 345678889999999
Q ss_pred hcCCHHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011081 399 DKRRVFEALDILKARVVKFG----LFPTEKSYMFLIKGLCEE----------GKMEEALKVQAEMVGKGFEPSLEIYSAF 464 (494)
Q Consensus 399 ~~~~~~~a~~~~~~~~~~~~----~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l 464 (494)
..|++++|.+.+++.+.... .......+......+.+. |++++|...|++..+.. +.+...|..+
T Consensus 390 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l 468 (537)
T 3fp2_A 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGL 468 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 99999999999997665431 111222344556677777 99999999999999752 4468889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHccccc
Q 011081 465 IDGYMKEGNVEMATMLRKEMFENQVRQ 491 (494)
Q Consensus 465 i~~~~~~g~~~~a~~~~~~m~~~~~~p 491 (494)
...|.+.|++++|.+.+++..+..+..
T Consensus 469 ~~~~~~~g~~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 469 AQLKLQMEKIDEAIELFEDSAILARTM 495 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999876643
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=2e-19 Score=170.50 Aligned_cols=307 Identities=11% Similarity=0.021 Sum_probs=253.9
Q ss_pred hhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccc
Q 011081 158 PFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDV 237 (494)
Q Consensus 158 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 237 (494)
+..+..+...+...|+ +++|++.|+.+.+.... +..++..+...+...|++++|.+.|+++....+.
T Consensus 3 ~~~~~~~~~~~~~~g~---~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------- 69 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQ---LADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD--------- 69 (359)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---------
T ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------
Confidence 3456667788889999 99999999999986543 6788999999999999999999999999875543
Q ss_pred ccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC---cCHhHHHHH------------HHHHHhcCCHHHHH
Q 011081 238 KRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCE---PDCYSYSVL------------MAVFCEERRMREAE 302 (494)
Q Consensus 238 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~---p~~~~~~~l------------i~~~~~~g~~~~a~ 302 (494)
+...|..+...+.+.|++++|...|++..+.. + .+...+..+ ...+...|++++|.
T Consensus 70 --------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 70 --------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp --------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------cchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 67889999999999999999999999998763 2 244445444 57888999999999
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011081 303 KLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 303 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 382 (494)
++++.+.+.. +.+..++..+...|...|++++|...++++.+.. +.+..++..+...|...|++++|...|+...+..
T Consensus 141 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 218 (359)
T 3ieg_A 141 TFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 218 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999998764 4578899999999999999999999999998875 6678899999999999999999999999998764
Q ss_pred CCCChhhHH------------HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 383 FEPEGSTIE------------VLIGELCDKRRVFEALDILKARVVKFGLFPTE--KSYMFLIKGLCEEGKMEEALKVQAE 448 (494)
Q Consensus 383 ~~p~~~~~~------------~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~ 448 (494)
. .+...+. .+...+...|++++|...+++.+....-.+.. ..+..+..++...|++++|.+.+++
T Consensus 219 ~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 297 (359)
T 3ieg_A 219 Q-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSE 297 (359)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred c-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 2 2333332 23566889999999999999877765322211 2355677889999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 449 MVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 449 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
..+.. +.+..+|..+...+...|++++|.+.+++..+..+.
T Consensus 298 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 298 VLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 99752 347889999999999999999999999999987654
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.6e-19 Score=180.20 Aligned_cols=355 Identities=11% Similarity=-0.018 Sum_probs=285.3
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHH
Q 011081 106 SSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVR 185 (494)
Q Consensus 106 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~ 185 (494)
..+......+.+.|++++|...|+.+++ ..|++.++..+..++.+.|+ +++|++.++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--------------------~~p~~~~~~~la~~~~~~g~---~~~A~~~~~ 63 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALE--------------------LKEDPVFYSNLSACYVSVGD---LKKVVEMST 63 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHH--------------------HCCCHHHHHHHHHHHHHHTC---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHh--------------------cCccHHHHHhHHHHHHHHhh---HHHHHHHHH
Confidence 4566777889999999999999999876 23567788889999999999 999999999
Q ss_pred HHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccc------------ccccc-------------
Q 011081 186 MLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGK------------DVKRV------------- 240 (494)
Q Consensus 186 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~~~~~------------- 240 (494)
++.+.+.. +..++..+..+|.+.|++++|...|+++....+........ ...+.
T Consensus 64 ~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 142 (514)
T 2gw1_A 64 KALELKPD-YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTE 142 (514)
T ss_dssp HHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-------------
T ss_pred HHhccChH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99987643 67889999999999999999999999998776531110000 00000
Q ss_pred -------------------------------------cccccCHHHHHHHHHHHHh---cCCHhHHHHHHHHHHH-----
Q 011081 241 -------------------------------------VRVRPNVHTFNALMVGFYR---EGAFEKVEDVWVEMAR----- 275 (494)
Q Consensus 241 -------------------------------------~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~----- 275 (494)
.....+...+......+.. .|++++|..+|+++.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 222 (514)
T 2gw1_A 143 LSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQ 222 (514)
T ss_dssp --------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhh
Confidence 0001124455555555554 8999999999999987
Q ss_pred cCC--------CcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 011081 276 LGC--------EPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSG 347 (494)
Q Consensus 276 ~g~--------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 347 (494)
... +.+..++..+...+...|++++|...++.+.+.. |+..+|..+..+|...|++++|...|+++.+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 300 (514)
T 2gw1_A 223 LDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD 300 (514)
T ss_dssp TTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC
T ss_pred hccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC
Confidence 311 2235678889999999999999999999998875 338889999999999999999999999998875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHH
Q 011081 348 VESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYM 427 (494)
Q Consensus 348 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 427 (494)
+.+...+..+...|...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++.+.... .+...+.
T Consensus 301 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~ 376 (514)
T 2gw1_A 301 -SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP--EAPEVPN 376 (514)
T ss_dssp -TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST--TCSHHHH
T ss_pred -cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc--cCHHHHH
Confidence 5577889999999999999999999999999875 33667888899999999999999999997776543 3456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcccc
Q 011081 428 FLIKGLCEEGKMEEALKVQAEMVGKG-FEPS----LEIYSAFIDGYMK---EGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~----~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~ 490 (494)
.+...+.+.|++++|.+.++++.+.. -.++ ...|..+...+.. .|++++|.+.++++.+..+.
T Consensus 377 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 447 (514)
T 2gw1_A 377 FFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR 447 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc
Confidence 89999999999999999999998641 1122 4488899999999 99999999999999886543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=2.7e-18 Score=162.71 Aligned_cols=322 Identities=9% Similarity=0.030 Sum_probs=261.8
Q ss_pred CHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHH
Q 011081 104 SLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDI 183 (494)
Q Consensus 104 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~ 183 (494)
+...+..+...+.+.|++++|...++.+++. ...++.++..+..++...|+ +++|++.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-------------------~p~~~~~~~~~a~~~~~~~~---~~~A~~~ 59 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-------------------DPDNYIAYYRRATVFLAMGK---SKAALPD 59 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHHTC---HHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------------------CcccHHHHHHHHHHHHHccC---HHHHHHH
Confidence 3456778888999999999999999998762 23456788888899999999 9999999
Q ss_pred HHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHH----------
Q 011081 184 VRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNAL---------- 253 (494)
Q Consensus 184 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l---------- 253 (494)
++.+.+.... +...+..+...+...|++++|.+.|+++....+. ...+...+..+
T Consensus 60 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~~ 124 (359)
T 3ieg_A 60 LTKVIALKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS--------------EQEEKEAESQLVKADEMQRLR 124 (359)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCC--------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCc--------------ccChHHHHHHHHHHHHHHHHH
Confidence 9999986533 6788999999999999999999999999876540 00144445444
Q ss_pred --HHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC
Q 011081 254 --MVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIG 331 (494)
Q Consensus 254 --i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 331 (494)
...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..+|..+...|...|
T Consensus 125 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 125 SQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLG 202 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 688999999999999999998875 4577889999999999999999999999998874 557889999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHH
Q 011081 332 EMARAEEFFREMGLSGVESSSVTFE------------HLVNGYCRAGDVDSAILVYNDMCRKGFEPEG----STIEVLIG 395 (494)
Q Consensus 332 ~~~~A~~~~~~m~~~~~~~~~~~~~------------~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~ 395 (494)
++++|...|++..+.. +.+...+. .+...+.+.|++++|...++++.+.... +. ..+..+..
T Consensus 203 ~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 203 DHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICH 280 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHH
Confidence 9999999999998764 34444433 2366789999999999999999886422 22 23455778
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh
Q 011081 396 ELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS-LEIYSAFIDGYMK 470 (494)
Q Consensus 396 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~ 470 (494)
.+...|++++|.+.+++.+... +.+..+|..+...|.+.|++++|.+.|++..+. .|+ ...+..+..+...
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHH
Confidence 8999999999999999777653 346788999999999999999999999999965 555 5666666655443
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=4e-18 Score=159.71 Aligned_cols=294 Identities=13% Similarity=0.026 Sum_probs=247.2
Q ss_pred cCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccc
Q 011081 154 CGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGI 233 (494)
Q Consensus 154 ~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 233 (494)
...++.++..+...+...|+ +++|+++++.+.+.... +...+..++.++...|++++|...++++....+.
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----- 88 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCD---FKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYPS----- 88 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----
T ss_pred chhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-----
Confidence 45566778888888999999 99999999999886543 5667777888899999999999999999876543
Q ss_pred ccccccccccccCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011081 234 GKDVKRVVRVRPNVHTFNALMVGFYREG-AFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKN 312 (494)
Q Consensus 234 ~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 312 (494)
+...|..+...+...| ++++|...|++..+.. +.+...|..+...+...|++++|...++++.+..
T Consensus 89 ------------~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 155 (330)
T 3hym_B 89 ------------NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM 155 (330)
T ss_dssp ------------STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred ------------CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Confidence 6788999999999999 9999999999998765 4467789999999999999999999999998874
Q ss_pred CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CC
Q 011081 313 VEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG--------FE 384 (494)
Q Consensus 313 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------~~ 384 (494)
+.+...+..+...|...|++++|.+.|++..+.. +.+...+..+...|...|++++|...++++.+.. ..
T Consensus 156 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 233 (330)
T 3hym_B 156 -KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD 233 (330)
T ss_dssp -TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTT
T ss_pred -cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccccc
Confidence 3456778889999999999999999999999875 5678899999999999999999999999988742 12
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 011081 385 PEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEP-SLEIYSA 463 (494)
Q Consensus 385 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ 463 (494)
.+..++..+...+...|++++|...+++.+.... .+...+..+..+|.+.|++++|.+.+++..+. .| +...+..
T Consensus 234 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 309 (330)
T 3hym_B 234 KWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP--QNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTM 309 (330)
T ss_dssp TCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc--cchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHH
Confidence 3456888999999999999999999998776542 35678889999999999999999999999864 44 6778888
Q ss_pred HHHHH-HhcCCHH
Q 011081 464 FIDGY-MKEGNVE 475 (494)
Q Consensus 464 li~~~-~~~g~~~ 475 (494)
+..++ ...|+.+
T Consensus 310 l~~~~~~~~g~~~ 322 (330)
T 3hym_B 310 LGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHTTTTC--
T ss_pred HHHHHHHHhCchh
Confidence 88877 4556644
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=2.4e-18 Score=161.23 Aligned_cols=276 Identities=11% Similarity=-0.053 Sum_probs=235.9
Q ss_pred CCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 011081 192 LSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWV 271 (494)
Q Consensus 192 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 271 (494)
...+...+..+...+...|++++|.++|+++....+. +...+..++..+.+.|++++|..+++
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-----------------~~~~~~~~~~~~~~~~~~~~A~~~~~ 80 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-----------------HASCLPVHIGTLVELNKANELFYLSH 80 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CTTTHHHHHHHHHHHTCHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----------------ChhhHHHHHHHHHHhhhHHHHHHHHH
Confidence 3446677788888999999999999999999876543 55667778889999999999999999
Q ss_pred HHHHcCCCcCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 011081 272 EMARLGCEPDCYSYSVLMAVFCEER-RMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVES 350 (494)
Q Consensus 272 ~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 350 (494)
++.+.. +.+...+..+...+...| ++++|.+.|+...+.. +.+...|..+...|...|++++|.+.|+++.+.. +.
T Consensus 81 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~ 157 (330)
T 3hym_B 81 KLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KG 157 (330)
T ss_dssp HHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TT
T ss_pred HHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cc
Confidence 998874 446788999999999999 9999999999998875 4467889999999999999999999999998875 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-------CCCCH
Q 011081 351 SSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFG-------LFPTE 423 (494)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-------~~p~~ 423 (494)
+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...+++.+.... ...+.
T Consensus 158 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 236 (330)
T 3hym_B 158 CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE 236 (330)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH
Confidence 56778889999999999999999999998875 44678889999999999999999999997776431 13345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 424 KSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
.++..+..+|.+.|++++|.+.+++..+.. +.+...|..+...+.+.|++++|.+.+++..+..+
T Consensus 237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 237 PLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 688999999999999999999999999763 34678899999999999999999999999887654
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=1.2e-17 Score=167.70 Aligned_cols=354 Identities=12% Similarity=0.056 Sum_probs=267.7
Q ss_pred HhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHH
Q 011081 105 LSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIV 184 (494)
Q Consensus 105 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~ 184 (494)
...|......+.+.|++++|...++.+++. .+.++.++..+..+|.+.|+ +++|++.+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------------------~p~~~~~~~~la~~~~~~g~---~~~A~~~~ 82 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL-------------------DPNEPVFYSNISACYISTGD---LEKVIEFT 82 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHHTC---HHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh-------------------CCCCcHHHHHHHHHHHHcCC---HHHHHHHH
Confidence 346777888999999999999999998762 33456788889999999999 99999999
Q ss_pred HHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccc---------ccc----cccc--------cc
Q 011081 185 RMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIG---------KDV----KRVV--------RV 243 (494)
Q Consensus 185 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---------~~~----~~~~--------~~ 243 (494)
+++.+.+.. +..++..+..++...|++++|.+.|+ .....+....... ..+ .+.. ..
T Consensus 83 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 160 (537)
T 3fp2_A 83 TKALEIKPD-HSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQV 160 (537)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CC
T ss_pred HHHHhcCCc-hHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccc
Confidence 999987643 78889999999999999999999996 4433332110000 000 0000 00
Q ss_pred ccCHH------------------------------HHHHHHHHHHh--------cCCHhHHHHHHHHHHHcCCCcC----
Q 011081 244 RPNVH------------------------------TFNALMVGFYR--------EGAFEKVEDVWVEMARLGCEPD---- 281 (494)
Q Consensus 244 ~p~~~------------------------------~~~~li~~~~~--------~g~~~~a~~~~~~m~~~g~~p~---- 281 (494)
.|+.. .+..+...+.. .|++++|..+++++.+.. |+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~ 238 (537)
T 3fp2_A 161 LPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPL 238 (537)
T ss_dssp CCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHH
T ss_pred cchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchh
Confidence 11111 22222222211 247899999999988763 43
Q ss_pred ----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 011081 282 ----CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEH 357 (494)
Q Consensus 282 ----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 357 (494)
..++..+...+...|++++|...++.+.+. .|+..+|..+...|...|++++|.+.|+++.+.. +.+..+|..
T Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 315 (537)
T 3fp2_A 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYH 315 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHH
Confidence 235677778888999999999999999887 4568899999999999999999999999998875 567889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011081 358 LVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEG 437 (494)
Q Consensus 358 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 437 (494)
+...|...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++.+... +.+...+..+...+...|
T Consensus 316 l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 392 (537)
T 3fp2_A 316 RGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRG 392 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhC
Confidence 9999999999999999999998865 3356788899999999999999999999777664 244668888999999999
Q ss_pred CHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcccc
Q 011081 438 KMEEALKVQAEMVGKG-----FEPSLEIYSAFIDGYMKE----------GNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 438 ~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~~~~ 490 (494)
++++|.+.|+++.+.. .......+..+...+... |++++|...+++..+..+.
T Consensus 393 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 460 (537)
T 3fp2_A 393 DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR 460 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC
Confidence 9999999999987641 111233345556677777 9999999999999987653
No 17
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.82 E-value=3.4e-20 Score=187.61 Aligned_cols=165 Identities=10% Similarity=0.101 Sum_probs=135.9
Q ss_pred cCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH---cCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHH
Q 011081 245 PNVHTFNALMVGFYREGAFEKVEDVWVEMAR---LGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYN 321 (494)
Q Consensus 245 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 321 (494)
--..|||+||++||+.|++++|.++|++|.+ .|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||.+|||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3568999999999999999999999988764 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------hhhHHHHH
Q 011081 322 TIIGGFCEIGEM-ARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPE------GSTIEVLI 394 (494)
Q Consensus 322 ~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~li 394 (494)
+||.++|+.|+. ++|.++|++|.+.|+.||..+|++++.++.+. .+++..+++ ..++.|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 999999999985 78999999999999999999999999876654 344444444 3345544 55556666
Q ss_pred HHHHhcC---------CHHHHHHHHHHHH
Q 011081 395 GELCDKR---------RVFEALDILKARV 414 (494)
Q Consensus 395 ~~~~~~~---------~~~~a~~~~~~~~ 414 (494)
+.|.+.+ ..++-.+.|++.+
T Consensus 280 dl~s~d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 280 DVYAKDGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp HHHCCCSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred HHHccCCCCcCccccCCHHHHHHHHHHHH
Confidence 7776655 2355555555433
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=3e-18 Score=163.32 Aligned_cols=290 Identities=10% Similarity=-0.028 Sum_probs=230.1
Q ss_pred hcCChhcHHHHHH-HHHHHHhCCCC-c--ChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccccccccc
Q 011081 170 EVKNIEKIETCVD-IVRMLMSRGLS-V--KVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRP 245 (494)
Q Consensus 170 ~~~~~~~~~~a~~-~~~~m~~~g~~-~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (494)
..|+ +++|++ .+++..+.... | +...+..+...+.+.|++++|...|+++....+.
T Consensus 37 ~~~~---~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----------------- 96 (368)
T 1fch_A 37 WLSD---YDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK----------------- 96 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-----------------
T ss_pred HHHH---HHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----------------
Confidence 3456 888887 77765543221 1 3566888899999999999999999999876543
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHH---
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNT--- 322 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~--- 322 (494)
+..+|..+...+.+.|++++|+..|+++.+.. +.+..++..+...|...|++++|.+.++.+.+... .+...+..
T Consensus 97 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~ 174 (368)
T 1fch_A 97 HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEE 174 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC----
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHH
Confidence 78899999999999999999999999998875 45788899999999999999999999999988742 23333321
Q ss_pred ------------HHHHHHccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 011081 323 ------------IIGGFCEIGEMARAEEFFREMGLSGVES--SSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGS 388 (494)
Q Consensus 323 ------------li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 388 (494)
.+..+...|++++|...|+++.+.. +. +..++..+...|...|++++|...|+++.+.. +.+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~ 252 (368)
T 1fch_A 175 GAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYL 252 (368)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHH
Confidence 2444448999999999999998864 22 58899999999999999999999999998864 34577
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----------CCH
Q 011081 389 TIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFE----------PSL 458 (494)
Q Consensus 389 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------p~~ 458 (494)
++..+...+...|++++|+..+++.+... +.+...+..+..+|.+.|++++|.+.|+++.+..-. ...
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 89999999999999999999999777654 245778999999999999999999999999864111 126
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 459 EIYSAFIDGYMKEGNVEMATMLRKEMF 485 (494)
Q Consensus 459 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 485 (494)
.+|..+..+|...|+.++|..++++-+
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 899999999999999999999876443
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=6e-18 Score=161.21 Aligned_cols=266 Identities=11% Similarity=-0.023 Sum_probs=192.8
Q ss_pred ChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011081 195 KVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMA 274 (494)
Q Consensus 195 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (494)
+...+..+...+.+.|++++|.+.|+++....+. +..+|..+...|.+.|++++|+..|+++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-----------------DAEAWQFLGITQAENENEQAAIVALQRCL 126 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445667777777777888888888777665433 67777778888888888888888888777
Q ss_pred HcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----------HhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011081 275 RLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD----------VVAYNTIIGGFCEIGEMARAEEFFREMG 344 (494)
Q Consensus 275 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 344 (494)
+.. +.+..++..+...|.+.|++++|...|+++.+.. +.+ ...+..+...|.+.|++++|.++|+++.
T Consensus 127 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 204 (365)
T 4eqf_A 127 ELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAA 204 (365)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHH
T ss_pred hcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 664 3356777777788888888888888887776642 111 2233445778888888999999998888
Q ss_pred hCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC
Q 011081 345 LSGVES--SSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPT 422 (494)
Q Consensus 345 ~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 422 (494)
+.. +. +..++..+...|...|++++|...|+++++.. +.+..++..+...|...|++++|+..|++.+... +.+
T Consensus 205 ~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~ 280 (365)
T 4eqf_A 205 HQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--PGF 280 (365)
T ss_dssp HHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred HhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCc
Confidence 764 22 67888888888889999999999998888764 3467788888888999999999999988776653 234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 423 EKSYMFLIKGLCEEGKMEEALKVQAEMVGKG---FE--------PSLEIYSAFIDGYMKEGNVEMATMLRKE 483 (494)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~ 483 (494)
..+|..+..+|.+.|++++|.+.|+++.+.. .. .+..+|..+..++...|+.+.+.++.++
T Consensus 281 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 281 IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 7788888899999999999999999887641 01 1357888899999999999888877654
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=1.2e-17 Score=159.18 Aligned_cols=266 Identities=10% Similarity=-0.037 Sum_probs=218.5
Q ss_pred hhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccc
Q 011081 158 PFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDV 237 (494)
Q Consensus 158 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 237 (494)
...+..+...+.+.|+ +++|++.|+++.+.... +..++..+..+|...|++++|.+.|+++....+.
T Consensus 65 ~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------- 131 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGD---LPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPN--------- 131 (365)
T ss_dssp CTTHHHHHHHHHHHTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------
T ss_pred hhHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---------
Confidence 3457788889999999 99999999999987543 7889999999999999999999999999876543
Q ss_pred ccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC-----------HhHHHHHHHHHHhcCCHHHHHHHHH
Q 011081 238 KRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPD-----------CYSYSVLMAVFCEERRMREAEKLWE 306 (494)
Q Consensus 238 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----------~~~~~~li~~~~~~g~~~~a~~~~~ 306 (494)
+..+|..+...|.+.|++++|+..|+++.+.. |+ ...+..+...+.+.|++++|..+|+
T Consensus 132 --------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 201 (365)
T 4eqf_A 132 --------NLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYL 201 (365)
T ss_dssp --------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 68899999999999999999999999998753 22 2233445788999999999999999
Q ss_pred HHHhCCCC-CCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011081 307 EMRDKNVE-HDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEP 385 (494)
Q Consensus 307 ~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 385 (494)
++.+.... .+..+|..+...|.+.|++++|.+.|+++.+.. +.+..+|..+...|...|++++|...|+++++.. +.
T Consensus 202 ~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 279 (365)
T 4eqf_A 202 EAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PG 279 (365)
T ss_dssp HHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence 99887422 168899999999999999999999999998875 5678899999999999999999999999998864 33
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 386 EGSTIEVLIGELCDKRRVFEALDILKARVVKFGLF----------PTEKSYMFLIKGLCEEGKMEEALKVQAE 448 (494)
Q Consensus 386 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----------p~~~~~~~li~~~~~~g~~~~A~~~~~~ 448 (494)
+..++..+...|...|++++|...|++.+....-. .+...|..+..++...|+.+.+.++..+
T Consensus 280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 280 FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 57889999999999999999999999776543111 1256789999999999999998887664
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=2.2e-17 Score=154.34 Aligned_cols=266 Identities=9% Similarity=-0.052 Sum_probs=176.3
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 011081 198 TCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLG 277 (494)
Q Consensus 198 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 277 (494)
.+..+...+...|++++|.++|+++....+. +..+|..+...+.+.|++++|...++++.+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 85 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPE-----------------REEAWRSLGLTQAENEKDGLAIIALNHARMLD 85 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3444555555566666666666665543322 45556666666666666666666666665543
Q ss_pred CCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHH--------------HH-HHHccCCHHHHHHHHHH
Q 011081 278 CEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTI--------------IG-GFCEIGEMARAEEFFRE 342 (494)
Q Consensus 278 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~ 342 (494)
+.+..++..+...|...|++++|.+.++.+.+.. +.+...+..+ .. .+...|++++|.+.+++
T Consensus 86 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 163 (327)
T 3cv0_A 86 -PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHA 163 (327)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHH
Confidence 3345556666666666666666666666665542 1122222222 22 36677788888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC
Q 011081 343 MGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPT 422 (494)
Q Consensus 343 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 422 (494)
+.+.. +.+...+..+...|...|++++|...++++.+.. +.+..++..+...+...|++++|.+.+++.+... +.+
T Consensus 164 ~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~ 239 (327)
T 3cv0_A 164 ALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN--PGY 239 (327)
T ss_dssp HHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred HHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC
Confidence 87764 4467778888888888888888888888887764 3356677888888888888888888888666553 235
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 423 EKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEP-----------SLEIYSAFIDGYMKEGNVEMATMLRKEMFE 486 (494)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 486 (494)
...+..+...|.+.|++++|.+.+++..+..-.. +...|..+..++.+.|++++|..++++.++
T Consensus 240 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 240 VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 6678888888888899999998888887642111 367888888888999999999888765443
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=1.2e-14 Score=144.14 Aligned_cols=340 Identities=14% Similarity=0.062 Sum_probs=281.2
Q ss_pred ccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHH----CCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCC
Q 011081 82 KNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSR----ARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSA 157 (494)
Q Consensus 82 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 157 (494)
.++.+.|+..|..+... -+..++..+-..+.. .+++++|...++...+.+ +
T Consensus 56 ~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---------------------~ 110 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---------------------L 110 (490)
T ss_dssp CCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------------------C
T ss_pred CcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------------------C
Confidence 56788899999887644 256788888888888 899999999999887643 2
Q ss_pred hhhHHHHHHHHHh----cCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHc----CCChhHHHHHHHHHhcCCccc
Q 011081 158 PFVFDLLIKCCLE----VKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSR----GKGVISGYEIYREVFGLDSDA 229 (494)
Q Consensus 158 ~~~~~~li~~~~~----~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~ 229 (494)
+..+..|...|.. .++ .++|++.|++..+.| +...+..|...|.. .++.++|.+.|++..+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~---~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~---- 180 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVD---KAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ---- 180 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCC---HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHcCCCCCCC---HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----
Confidence 3444555566666 667 999999999998876 57778888888887 78999999999998663
Q ss_pred ccccccccccccccccCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHh----cCCHHHH
Q 011081 230 TAGIGKDVKRVVRVRPNVHTFNALMVGFYR----EGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCE----ERRMREA 301 (494)
Q Consensus 230 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a 301 (494)
.+...+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .+++++|
T Consensus 181 ---------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A 242 (490)
T 2xm6_A 181 ---------------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQS 242 (490)
T ss_dssp ---------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred ---------------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 267888889999988 899999999999998875 56778888888886 8999999
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHH
Q 011081 302 EKLWEEMRDKNVEHDVVAYNTIIGGFCE----IGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRA-----GDVDSAI 372 (494)
Q Consensus 302 ~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~ 372 (494)
.++|+...+.| +...+..+...|.. .+++++|++.|++..+.| +...+..+...|... ++.++|.
T Consensus 243 ~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~ 316 (490)
T 2xm6_A 243 RVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAI 316 (490)
T ss_dssp HHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence 99999998875 66778888888887 899999999999998765 456777788888887 8999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 011081 373 LVYNDMCRKGFEPEGSTIEVLIGELCDKR---RVFEALDILKARVVKFGLFPTEKSYMFLIKGLCE----EGKMEEALKV 445 (494)
Q Consensus 373 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~ 445 (494)
..|+...+.| +...+..+...|...| +.++|++.|++.... .+...+..+...|.. .+++++|.+.
T Consensus 317 ~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 389 (490)
T 2xm6_A 317 SWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIW 389 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999999876 4456677777777756 789999999976654 367788888899988 8999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcccc
Q 011081 446 QAEMVGKGFEPSLEIYSAFIDGYMK----EGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 446 ~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~ 490 (494)
|++..+.| +...+..|...|.+ .++.++|.+.|++..+.++.
T Consensus 390 ~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 390 MRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 99999875 57788888888888 89999999999999998854
No 23
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.79 E-value=1.2e-19 Score=183.59 Aligned_cols=166 Identities=11% Similarity=0.113 Sum_probs=134.6
Q ss_pred CcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011081 279 EPDCYSYSVLMAVFCEERRMREAEKLWEEMRD---KNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTF 355 (494)
Q Consensus 279 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 355 (494)
.--..||++||++||+.|++++|.++|++|.+ .|+.||++|||+||.+||+.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 34467999999999999999999999988764 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC------HHHHHH
Q 011081 356 EHLVNGYCRAGD-VDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPT------EKSYMF 428 (494)
Q Consensus 356 ~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~------~~~~~~ 428 (494)
|+||.++++.|+ .++|.++|++|.+.|+.||..+|+.++.+..+.+ .++.+++ + ..++.|+ ..+...
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrk-v-~P~f~p~~~~~~~~~t~~L 277 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHK-V-KPTFSLPPQLPPPVNTSKL 277 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGG-G-CCCCCCCCCCCCCCCCCTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHH-h-CcccCCCCCCcccccchHH
Confidence 999999999998 4789999999999999999999999987666543 3333331 2 2344444 334455
Q ss_pred HHHHHHhcC---------CHHHHHHHHHHHH
Q 011081 429 LIKGLCEEG---------KMEEALKVQAEMV 450 (494)
Q Consensus 429 li~~~~~~g---------~~~~A~~~~~~m~ 450 (494)
|.+.|.+.+ ..++-.++|++-+
T Consensus 278 L~dl~s~d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 278 LRDVYAKDGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp THHHHCCCSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred HHHHHccCCCCcCccccCCHHHHHHHHHHHH
Confidence 666666555 2455556665544
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=7.7e-17 Score=153.54 Aligned_cols=268 Identities=12% Similarity=0.008 Sum_probs=223.2
Q ss_pred hhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccc
Q 011081 158 PFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDV 237 (494)
Q Consensus 158 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 237 (494)
...+..+...+.+.|+ +++|+..|+++.+.... +..++..+..++...|++++|.+.|+++....+.
T Consensus 64 ~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------- 130 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGD---LPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPD--------- 130 (368)
T ss_dssp CSSHHHHHHHHHHTTC---HHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------
T ss_pred hHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC---------
Confidence 4567778888999999 99999999999987543 7788999999999999999999999999876543
Q ss_pred ccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHH---------------HHHHHHhcCCHHHHH
Q 011081 238 KRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSV---------------LMAVFCEERRMREAE 302 (494)
Q Consensus 238 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~---------------li~~~~~~g~~~~a~ 302 (494)
+..+|..+...|...|++++|...++++.+.. +.+...+.. .+..+...|++++|.
T Consensus 131 --------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 201 (368)
T 1fch_A 131 --------NQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVK 201 (368)
T ss_dssp --------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHH
Confidence 78899999999999999999999999998864 222222221 233444899999999
Q ss_pred HHHHHHHhCCCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011081 303 KLWEEMRDKNVEH-DVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 303 ~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 381 (494)
..|+++.+..... +..++..+...|.+.|++++|...|+++.+.. +.+..+|..+...|...|++++|...|+++.+.
T Consensus 202 ~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 280 (368)
T 1fch_A 202 ELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL 280 (368)
T ss_dssp HHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999998874221 57899999999999999999999999998864 557889999999999999999999999999886
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 382 GFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLF---------PTEKSYMFLIKGLCEEGKMEEALKVQAEM 449 (494)
Q Consensus 382 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---------p~~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (494)
. +.+...+..+...+...|++++|...|++.+....-. ....+|..+..+|...|+.++|..++.+.
T Consensus 281 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 281 Q-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 4 3467789999999999999999999999776543111 11678999999999999999999887643
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=1.2e-16 Score=149.39 Aligned_cols=267 Identities=11% Similarity=-0.060 Sum_probs=221.5
Q ss_pred hhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccc
Q 011081 159 FVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVK 238 (494)
Q Consensus 159 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 238 (494)
..+-.+...+...|+ +++|+++++++.+.... +..++..+..++...|++++|.+.|+++....+.
T Consensus 22 ~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------- 87 (327)
T 3cv0_A 22 ENPMEEGLSMLKLAN---LAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK---------- 87 (327)
T ss_dssp SCHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------
T ss_pred HHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC----------
Confidence 455667788889999 99999999999986543 7788999999999999999999999999775543
Q ss_pred cccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHH--------------HH-HHHhcCCHHHHHH
Q 011081 239 RVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVL--------------MA-VFCEERRMREAEK 303 (494)
Q Consensus 239 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l--------------i~-~~~~~g~~~~a~~ 303 (494)
+..+|..+...|...|++++|...++++.+.. +.+...+..+ .. .+...|++++|.+
T Consensus 88 -------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 88 -------DIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp -------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHH
Confidence 78889999999999999999999999998763 2223333333 22 3778899999999
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011081 304 LWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGF 383 (494)
Q Consensus 304 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 383 (494)
.++++.+.. +.+..++..+...|.+.|++++|.+.++++.+.. +.+..++..+...+...|++++|...|+++.+..
T Consensus 160 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 236 (327)
T 3cv0_A 160 LLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN- 236 (327)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 999998774 4478899999999999999999999999998875 5678899999999999999999999999998864
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 384 EPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLF----------PTEKSYMFLIKGLCEEGKMEEALKVQAEMV 450 (494)
Q Consensus 384 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (494)
+.+..++..+...+...|++++|.+.+++.+....-. .+...|..+..++.+.|+.++|..++++..
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3467788999999999999999999999776653210 036788899999999999999999887543
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=1.9e-15 Score=138.63 Aligned_cols=256 Identities=11% Similarity=-0.002 Sum_probs=207.0
Q ss_pred HHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHh
Q 011081 204 WEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCY 283 (494)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 283 (494)
+-....|++..|...++......+. ........+..+|...|++++|+..++. . -.|+..
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~----------------~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~ 66 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPE----------------RDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQ 66 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHH----------------HHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCch----------------hhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHH
Confidence 3445578999999988877543321 1234666778999999999999987754 2 366778
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011081 284 SYSVLMAVFCEERRMREAEKLWEEMRDKNVEH-DVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGY 362 (494)
Q Consensus 284 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 362 (494)
++..+...+...++.++|.+.++++...+..| +...+..+...|.+.|++++|++.|++ +.+...+..++..|
T Consensus 67 a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~ 140 (291)
T 3mkr_A 67 AVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQIL 140 (291)
T ss_dssp HHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHH
Confidence 88999999999999999999999998876444 566777888999999999999999987 56788999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 011081 363 CRAGDVDSAILVYNDMCRKGFEPEGSTI---EVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKM 439 (494)
Q Consensus 363 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 439 (494)
.+.|++++|.+.|+.+.+.. |+.... ...+..+...|++++|..+|++.+... +.+...|+.+..++.+.|++
T Consensus 141 ~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 141 LKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRW 216 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCH
T ss_pred HHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCH
Confidence 99999999999999999874 553211 223344455699999999999877764 46788899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcccc
Q 011081 440 EEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEM-ATMLRKEMFENQVR 490 (494)
Q Consensus 440 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~~~ 490 (494)
++|.+.|++.++.. +-+..++..++..+...|+.++ +.++++++.+.+|.
T Consensus 217 ~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 217 EAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 99999999998752 3468899999999999999876 67899999886654
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.74 E-value=3.3e-13 Score=133.73 Aligned_cols=320 Identities=11% Similarity=0.050 Sum_probs=267.1
Q ss_pred CHhHHHHHHHHHHH----CCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHh----cCChh
Q 011081 104 SLSSYATIIHILSR----ARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLE----VKNIE 175 (494)
Q Consensus 104 ~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~----~~~~~ 175 (494)
+..++..+-..+.. .+++++|...++...+.+ ++.++..|...|.. .++
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---------------------~~~a~~~Lg~~y~~g~g~~~~-- 94 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---------------------YTPAEYVLGLRYMNGEGVPQD-- 94 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------------------CHHHHHHHHHHHHHTSSSCCC--
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---------------------CHHHHHHHHHHHHcCCCCCCC--
Confidence 56777777777877 789999999999887643 24455566666776 778
Q ss_pred cHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHc----CCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHH
Q 011081 176 KIETCVDIVRMLMSRGLSVKVSTCNALIWEVSR----GKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFN 251 (494)
Q Consensus 176 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 251 (494)
.++|++.|++..+.| +...+..|...|.. .+++++|.+.|++..+.+ +...+.
T Consensus 95 -~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-------------------~~~a~~ 151 (490)
T 2xm6_A 95 -YAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-------------------RDSGQQ 151 (490)
T ss_dssp -HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------------------CHHHHH
T ss_pred -HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------------------CHHHHH
Confidence 999999999998876 67778888888888 789999999999986642 567788
Q ss_pred HHHHHHHh----cCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhHHHHH
Q 011081 252 ALMVGFYR----EGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCE----ERRMREAEKLWEEMRDKNVEHDVVAYNTI 323 (494)
Q Consensus 252 ~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 323 (494)
.+...|.. .+++++|++.|++..+.| +...+..|...|.. .+++++|.++|+...+.| +...+..+
T Consensus 152 ~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l 225 (490)
T 2xm6_A 152 SMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHL 225 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 88888887 789999999999998875 67888889999988 899999999999998876 67788889
Q ss_pred HHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 011081 324 IGGFCE----IGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCR----AGDVDSAILVYNDMCRKGFEPEGSTIEVLIG 395 (494)
Q Consensus 324 i~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 395 (494)
...|.. .+++++|..+|++..+.| +...+..+...|.. .++.++|+..|+...+.| +...+..+..
T Consensus 226 g~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~ 299 (490)
T 2xm6_A 226 ADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAH 299 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Confidence 988886 889999999999998865 45677777778877 899999999999998876 4556777777
Q ss_pred HHHhc-----CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011081 396 ELCDK-----RRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEG---KMEEALKVQAEMVGKGFEPSLEIYSAFIDG 467 (494)
Q Consensus 396 ~~~~~-----~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 467 (494)
.|... ++.++|+..+++.... + +...+..+...|.+.| +.++|.++|++..+.| +...+..|...
T Consensus 300 ~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~ 372 (490)
T 2xm6_A 300 LYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNA 372 (490)
T ss_dssp HHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 78877 8999999999966553 3 5567778888888766 8899999999999864 67888889999
Q ss_pred HHh----cCCHHHHHHHHHHHHHcc
Q 011081 468 YMK----EGNVEMATMLRKEMFENQ 488 (494)
Q Consensus 468 ~~~----~g~~~~a~~~~~~m~~~~ 488 (494)
|.. .+++++|.+++++..+.+
T Consensus 373 y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 373 LLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 988 899999999999998865
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=2.2e-15 Score=138.33 Aligned_cols=275 Identities=9% Similarity=0.043 Sum_probs=211.5
Q ss_pred HHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccccccccc
Q 011081 166 KCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRP 245 (494)
Q Consensus 166 ~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (494)
+-....|+ ++.|+...+................+.++|...|+++.|...++.. -.|
T Consensus 7 ~~~~~~g~---y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~--------------------~~~ 63 (291)
T 3mkr_A 7 KNAFYIGS---YQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS--------------------SAP 63 (291)
T ss_dssp HHHHHTTC---HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT--------------------SCH
T ss_pred HHHHHHHH---HHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc--------------------CCh
Confidence 33455677 9999998877654332222345566788999999999998765432 156
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPD-CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTII 324 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 324 (494)
+..++..+...+...|+.++|++.++++...+..|+ ...+..+...+...|++++|++.++. +.+...+..++
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~ 137 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTV 137 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHH
Confidence 788999999999999999999999999988765554 55667777899999999999999987 46888999999
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 011081 325 GGFCEIGEMARAEEFFREMGLSGVESSSVTF---EHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKR 401 (494)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 401 (494)
..|.+.|++++|.+.|+++.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|
T Consensus 138 ~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g 214 (291)
T 3mkr_A 138 QILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQG 214 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcC
Confidence 99999999999999999998874 443211 223344445689999999999999873 557888999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011081 402 RVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEE-ALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATM 479 (494)
Q Consensus 402 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 479 (494)
++++|...+++.+.... -+..++..++..+...|+.++ +.++++++.+. .|+... +.+...+.+.++++..
T Consensus 215 ~~~eA~~~l~~al~~~p--~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 215 RWEAAEGVLQEALDKDS--GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLVL 286 (291)
T ss_dssp CHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHHH
Confidence 99999999998887653 466788889999999999876 67899998864 565332 2233444455555443
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=1.7e-13 Score=137.19 Aligned_cols=387 Identities=10% Similarity=0.069 Sum_probs=263.0
Q ss_pred ccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHH-----------
Q 011081 82 KNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKT----------- 150 (494)
Q Consensus 82 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~----------- 150 (494)
.++.+.|..+|..+.... +.+...|...+..+.+.|+++.|..+|++++... |+..+|......
T Consensus 25 ~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---p~~~lw~~~~~~~~~~~~~~~~a 99 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---LHIDLWKCYLSYVRETKGKLPSY 99 (530)
T ss_dssp SSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHHTTTSTTH
T ss_pred hCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHccchhhH
Confidence 466777888888876443 4567778888888888888888888888888754 233343333221
Q ss_pred -------hh----hcC---CChhhHHHHHHHHHh---------cCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHH-
Q 011081 151 -------YR----ECG---SAPFVFDLLIKCCLE---------VKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEV- 206 (494)
Q Consensus 151 -------~~----~~~---~~~~~~~~li~~~~~---------~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~- 206 (494)
|. .+| .+...|...+....+ .|+ +++|..+|++.++.........|.......
T Consensus 100 ~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~---~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~ 176 (530)
T 2ooe_A 100 KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQR---ITAVRRVYQRGCVNPMINIEQLWRDYNKYEE 176 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHH---HHHHHHHHHHHTTSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhH---HHHHHHHHHHHHhchhhhHHHHHHHHHHHHH
Confidence 10 112 123444444444333 466 888999998888732111123333322211
Q ss_pred ------------HcCCChhHHHHHHHHHhcCCcccccccccccccc-cccccC--------HHHHHHHHHHHHhc----C
Q 011081 207 ------------SRGKGVISGYEIYREVFGLDSDATAGIGKDVKRV-VRVRPN--------VHTFNALMVGFYRE----G 261 (494)
Q Consensus 207 ------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~--------~~~~~~li~~~~~~----g 261 (494)
.+.+++..|..++.+...... ...+. ..+.|+ ...|...+...... +
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~--------~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~ 248 (530)
T 2ooe_A 177 GINIHLAKKMIEDRSRDYMNARRVAKEYETVMK--------GLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE 248 (530)
T ss_dssp HHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH--------HCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred hhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHH--------HhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence 123455666666655211000 00000 012333 35676666443332 2
Q ss_pred CH----hHHHHHHHHHHHcCCCcCHhHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCCHhHHHHH
Q 011081 262 AF----EKVEDVWVEMARLGCEPDCYSYSVLMAVFCE-------ERRMR-------EAEKLWEEMRDKNVEHDVVAYNTI 323 (494)
Q Consensus 262 ~~----~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~m~~~g~~~~~~~~~~l 323 (494)
+. +++..+|++..... +-+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...|..+
T Consensus 249 ~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~ 327 (530)
T 2ooe_A 249 DQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 327 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 22 37788999988763 4467788888888876 69987 899999999863234568899999
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHhc
Q 011081 324 IGGFCEIGEMARAEEFFREMGLSGVESS--SVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGE-LCDK 400 (494)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~ 400 (494)
+..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|.++|+...+.. +.+...|...... +...
T Consensus 328 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHc
Confidence 99999999999999999999985 443 3589999999999999999999999998763 2223333332222 3468
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCHHHH
Q 011081 401 RRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKG-FEPS--LEIYSAFIDGYMKEGNVEMA 477 (494)
Q Consensus 401 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~li~~~~~~g~~~~a 477 (494)
|+.++|..+|+..++..+ -+...|..++..+.+.|+.++|..+|++.+..+ ..|+ ...|...+......|+.+.+
T Consensus 405 ~~~~~A~~~~e~al~~~p--~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp CCHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred CChhHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999998887652 357789999999999999999999999999863 2332 55898889988999999999
Q ss_pred HHHHHHHHHcccc
Q 011081 478 TMLRKEMFENQVR 490 (494)
Q Consensus 478 ~~~~~~m~~~~~~ 490 (494)
.++.+++.+.-+.
T Consensus 483 ~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 483 LKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHCch
Confidence 9999999887653
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=9e-18 Score=157.92 Aligned_cols=283 Identities=12% Similarity=0.090 Sum_probs=128.1
Q ss_pred HCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcCh
Q 011081 117 RARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKV 196 (494)
Q Consensus 117 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 196 (494)
+.|++++|.++++++ +.+.+|..|..++.+.|+ +++|++.|.+. +|.
T Consensus 15 ~~~~ld~A~~fae~~------------------------~~~~vWs~La~A~l~~g~---~~eAIdsfika------~D~ 61 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------------------------NEPAVWSQLAKAQLQKGM---VKEAIDSYIKA------DDP 61 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------------------------CChHHHHHHHHHHHHcCC---HHHHHHHHHcC------CCH
Confidence 446677777777654 224588889999999999 99999999642 477
Q ss_pred HhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 011081 197 STCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARL 276 (494)
Q Consensus 197 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 276 (494)
.+|..++.++...|++++|.+.++...+. .++..+.+.++.+|.+.|++.++.++++
T Consensus 62 ~~y~~V~~~ae~~g~~EeAi~yl~~ark~------------------~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----- 118 (449)
T 1b89_A 62 SSYMEVVQAANTSGNWEELVKYLQMARKK------------------ARESYVETELIFALAKTNRLAELEEFIN----- 118 (449)
T ss_dssp -----------------------------------------------------------------CHHHHTTTTT-----
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHh------------------CccchhHHHHHHHHHHhCCHHHHHHHHc-----
Confidence 78999999999999999999977766542 3456778899999999999999888884
Q ss_pred CCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011081 277 GCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFE 356 (494)
Q Consensus 277 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 356 (494)
.|+..+|+.+...|...|.+++|..+|..+ ..|..++.++.+.|++++|.+.++++ .++.+|.
T Consensus 119 --~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk 181 (449)
T 1b89_A 119 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWK 181 (449)
T ss_dssp --CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHH
T ss_pred --CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHH
Confidence 367779999999999999999999999976 47899999999999999999999988 2678999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011081 357 HLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEE 436 (494)
Q Consensus 357 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 436 (494)
.++.+|...|+++.|......+. ..|+ -...++..|.+.|++++|+.+++..+... +-....|+-+.-+|++-
T Consensus 182 ~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l~~lv~~Yek~G~~eEai~lLe~aL~le--~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 182 EVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHHHHHHHTTCHHHHHHTTTTTT---TCHH--HHHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHH---hCHh--hHHHHHHHHHHCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHhc
Confidence 99999999999999966555422 2333 35568888999999999999998766433 34566777777777764
Q ss_pred CCHHHHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCCHHHHHHH
Q 011081 437 GKMEEALKVQAEMVGK-GFEP------SLEIYSAFIDGYMKEGNVEMATML 480 (494)
Q Consensus 437 g~~~~A~~~~~~m~~~-~~~p------~~~~~~~li~~~~~~g~~~~a~~~ 480 (494)
+.++.++-++...++ .++| +...|..+.-.|.+.++++.|...
T Consensus 255 -~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 255 -KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp -CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 334333333333222 3333 355688888888899999988764
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.71 E-value=3.8e-16 Score=146.95 Aligned_cols=282 Identities=12% Similarity=0.097 Sum_probs=133.6
Q ss_pred hccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhh
Q 011081 81 LKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFV 160 (494)
Q Consensus 81 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (494)
..++.+.|.+++..+. .+.+|..+..++.+.|++++|++.|... +++.+
T Consensus 15 ~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika------------------------~D~~~ 63 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------------------------DDPSS 63 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------------------------CCHHH
Confidence 3456788999988752 2359999999999999999999888532 34567
Q ss_pred HHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccc
Q 011081 161 FDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRV 240 (494)
Q Consensus 161 ~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (494)
|..++.++...|+ +++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++
T Consensus 64 y~~V~~~ae~~g~---~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------------------- 118 (449)
T 1b89_A 64 YMEVVQAANTSGN---WEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------------------- 118 (449)
T ss_dssp --------------------------------------------------CHHHHTTTTT--------------------
T ss_pred HHHHHHHHHhCCC---HHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------------------
Confidence 8888889999999 99999987777663 4467888999999999999998876652
Q ss_pred cccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHH
Q 011081 241 VRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAY 320 (494)
Q Consensus 241 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 320 (494)
.|+..+|+.+...|...|++++|..+|..+ ..|..++.++.+.|++++|.+.+..+ .++.+|
T Consensus 119 ---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~W 180 (449)
T 1b89_A 119 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTW 180 (449)
T ss_dssp ---CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHH
T ss_pred ---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhH
Confidence 357779999999999999999999999976 47899999999999999999999988 288999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 011081 321 NTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDK 400 (494)
Q Consensus 321 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 400 (494)
..++.+|+..|+++.|......+ ...+.-...++..|.+.|++++|..+++..+... +-....|+.+...|++-
T Consensus 181 k~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 181 KEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc
Confidence 99999999999999996665543 2333345578999999999999999999988765 44566777777666654
Q ss_pred --CCHHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHH
Q 011081 401 --RRVFEALDILKARVVKFGLFP------TEKSYMFLIKGLCEEGKMEEALKV 445 (494)
Q Consensus 401 --~~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~ 445 (494)
+++.+.++.|.. .-+++| +...|.-++..|...++++.|...
T Consensus 255 ~p~k~~ehl~~~~~---~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 255 KPQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp CHHHHHHHHHHHST---TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 345555555542 223333 345688899999999999988763
No 32
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=1.4e-13 Score=137.84 Aligned_cols=342 Identities=10% Similarity=0.002 Sum_probs=239.0
Q ss_pred CCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHH
Q 011081 102 KHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCV 181 (494)
Q Consensus 102 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~ 181 (494)
+-+..+|..++.. .+.|++++|+.+++.+++. .+.+...|...+..+.+.|+ .++|.
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-------------------~P~~~~~w~~~~~~~~~~~~---~~~a~ 66 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQ-------------------FPSSGRFWKLYIEAEIKAKN---YDKVE 66 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-------------------CTTCHHHHHHHHHHHHHTTC---HHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-------------------CCCCHHHHHHHHHHHHhcCC---HHHHH
Confidence 4477889999984 7889999999999999873 33455677778888888899 99999
Q ss_pred HHHHHHHhCCCCcChHhHHHHHHH-HHcCCChhHHHH----HHHHHhcCCcccccccccccccccccc-cCHHHHHHHHH
Q 011081 182 DIVRMLMSRGLSVKVSTCNALIWE-VSRGKGVISGYE----IYREVFGLDSDATAGIGKDVKRVVRVR-PNVHTFNALMV 255 (494)
Q Consensus 182 ~~~~~m~~~g~~~~~~~~~~ll~~-~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~li~ 255 (494)
++|++.++.. |++..|..++.. ....|+.+.|.+ +|+..+... |.. ++...|...+.
T Consensus 67 ~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~---------------g~~~~~~~~w~~~~~ 129 (530)
T 2ooe_A 67 KLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKI---------------GMEIMSYQIWVDYIN 129 (530)
T ss_dssp HHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHT---------------TTSTTCHHHHHHHHH
T ss_pred HHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHC---------------CCCcccHHHHHHHHH
Confidence 9999998854 577777777753 345677777765 666654321 111 24566666666
Q ss_pred HHHh---------cCCHhHHHHHHHHHHHcCCCcCHhHHH----------------------------------------
Q 011081 256 GFYR---------EGAFEKVEDVWVEMARLGCEPDCYSYS---------------------------------------- 286 (494)
Q Consensus 256 ~~~~---------~g~~~~a~~~~~~m~~~g~~p~~~~~~---------------------------------------- 286 (494)
...+ .|++++|..+|++..+.........|.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~ 209 (530)
T 2ooe_A 130 FLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMK 209 (530)
T ss_dssp HHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5443 566777777777766521111112222
Q ss_pred -------------------------HHHHHHHhc----CCH----HHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc----
Q 011081 287 -------------------------VLMAVFCEE----RRM----REAEKLWEEMRDKNVEHDVVAYNTIIGGFCE---- 329 (494)
Q Consensus 287 -------------------------~li~~~~~~----g~~----~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~---- 329 (494)
..+...... ++. +.|..+|++..... +.+...|..++..+.+
T Consensus 210 ~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~ 288 (530)
T 2ooe_A 210 GLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKL 288 (530)
T ss_dssp HCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred HhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchh
Confidence 111111000 111 24444555555432 3356677777777765
Q ss_pred ---cCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHH
Q 011081 330 ---IGEMA-------RAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPE--GSTIEVLIGEL 397 (494)
Q Consensus 330 ---~g~~~-------~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~ 397 (494)
.|+++ +|..+|++..+.-.+.+...|..++..+.+.|++++|..+|+.+++. .|+ ...|..++..+
T Consensus 289 ~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~ 366 (530)
T 2ooe_A 289 LAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFA 366 (530)
T ss_dssp HHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHH
T ss_pred hhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHH
Confidence 68887 89999999986323556889999999999999999999999999985 444 24788888888
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011081 398 CDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKG-LCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEM 476 (494)
Q Consensus 398 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 476 (494)
.+.|+.++|.++|++.+..... +...|...+.. +...|+.++|.++|++.++.. +.+...|..++..+.+.|+.++
T Consensus 367 ~~~~~~~~A~~~~~~Al~~~~~--~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~ 443 (530)
T 2ooe_A 367 RRAEGIKSGRMIFKKAREDART--RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNN 443 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTC--CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHhccCC--chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhh
Confidence 8999999999999977754322 22333322222 346899999999999998752 3368899999999999999999
Q ss_pred HHHHHHHHHHccc
Q 011081 477 ATMLRKEMFENQV 489 (494)
Q Consensus 477 a~~~~~~m~~~~~ 489 (494)
|+.+|++.+..++
T Consensus 444 Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 444 TRVLFERVLTSGS 456 (530)
T ss_dssp HHHHHHHHHHSCC
T ss_pred HHHHHHHHHhccC
Confidence 9999999998754
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=1.2e-13 Score=136.16 Aligned_cols=349 Identities=11% Similarity=-0.033 Sum_probs=234.1
Q ss_pred CCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhh-h-cCCChhhHHHHHHHHHhcCChhcHHHH
Q 011081 103 HSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYR-E-CGSAPFVFDLLIKCCLEVKNIEKIETC 180 (494)
Q Consensus 103 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~~~~~~~li~~~~~~~~~~~~~~a 180 (494)
.....||.+..++...|++++|++.++..++- ... ... . ......+|+.+..+|...|+ +++|
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~---------~~~---~~~~~~~~~~~~~~~nla~~y~~~g~---~~~A 113 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEEL---------IQQ---EHADQAEIRSLVTWGNYAWVYYHMGR---LSDV 113 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------HHH---HSGGGCTTTTHHHHHHHHHHHHHTTC---HHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------HHh---cCccccchHHHHHHHHHHHHHHHcCC---hHHH
Confidence 34568999999999999999999999887651 000 000 0 11234678889999999999 9999
Q ss_pred HHHHHHHHhCC------CCc-ChHhHHHHHHHHHc--CCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHH
Q 011081 181 VDIVRMLMSRG------LSV-KVSTCNALIWEVSR--GKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFN 251 (494)
Q Consensus 181 ~~~~~~m~~~g------~~~-~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 251 (494)
...+++..+.. ..+ ...++..+..++.. .+++++|.+.|+++++.+|. +...+.
T Consensus 114 ~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-----------------~~~~~~ 176 (472)
T 4g1t_A 114 QIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-----------------NPEFTS 176 (472)
T ss_dssp HHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-----------------CHHHHH
T ss_pred HHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-----------------CHHHHH
Confidence 99998876521 111 34556666555554 45789999999999876554 455555
Q ss_pred HHHHH---HHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhHHHHHH
Q 011081 252 ALMVG---FYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCE----ERRMREAEKLWEEMRDKNVEHDVVAYNTII 324 (494)
Q Consensus 252 ~li~~---~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 324 (494)
.+... +...++.++|++.+++..+.. +.+..++..+...+.. .|++++|.+++++..... +.+..++..+.
T Consensus 177 ~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg 254 (472)
T 4g1t_A 177 GLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAA 254 (472)
T ss_dssp HHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHH
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHH
Confidence 55544 345678888999998887764 3355666666555554 467788999999887764 55778889999
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHHCCCCC
Q 011081 325 GGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRA-------------------GDVDSAILVYNDMCRKGFEP 385 (494)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-------------------g~~~~a~~~~~~m~~~~~~p 385 (494)
..|.+.|++++|...|++..+.. +-+..++..+...|... +..++|...++...+.+ +.
T Consensus 255 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~ 332 (472)
T 4g1t_A 255 KFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DN 332 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cc
Confidence 99999999999999999988764 45566777666655432 23567788888877754 34
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH----HHHHHHH-HHHhcCCHHHHHHHHHHHHhCC-------
Q 011081 386 EGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEK----SYMFLIK-GLCEEGKMEEALKVQAEMVGKG------- 453 (494)
Q Consensus 386 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~-~~~~~g~~~~A~~~~~~m~~~~------- 453 (494)
+..++..+...+...|++++|++.|++.+... |+.. .+..+.. .+...|+.++|+..|.+.++..
T Consensus 333 ~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~ 409 (472)
T 4g1t_A 333 LFRVCSILASLHALADQYEEAEYYFQKEFSKE---LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE 409 (472)
T ss_dssp TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH
T ss_pred hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH
Confidence 56778888899999999999999999766542 3332 2222222 2346789999999888876531
Q ss_pred ----------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 454 ----------------FEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 454 ----------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
-+.+..+|..|...|...|++++|++.|++.++.+..
T Consensus 410 ~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 410 KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 1234668888999999999999999999999987653
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2.6e-14 Score=128.44 Aligned_cols=228 Identities=10% Similarity=0.071 Sum_probs=197.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HhH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNV--EHD----VVA 319 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~ 319 (494)
....|..+...+...|++++|+.+|++..+.. .+..++..+...+...|++++|.+.++...+... .++ ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 45778899999999999999999999999887 7888999999999999999999999999876521 112 588
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 011081 320 YNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCD 399 (494)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 399 (494)
|..+...|.+.|++++|.+.|++..+. .|+. ..+...|++++|...++.+.+.. +.+...+..+...+..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 999999999999999999999999885 3443 45667788999999999998864 3356778888999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011081 400 KRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATM 479 (494)
Q Consensus 400 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 479 (494)
.|++++|...+++.+.... .+...|..+..+|.+.|++++|.+.+++..+.. +.+...|..+..++.+.|++++|.+
T Consensus 152 ~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAP--EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999998777643 467889999999999999999999999999763 4458889999999999999999999
Q ss_pred HHHHHHHcc
Q 011081 480 LRKEMFENQ 488 (494)
Q Consensus 480 ~~~~m~~~~ 488 (494)
.+++..+..
T Consensus 229 ~~~~a~~~~ 237 (258)
T 3uq3_A 229 TLDAARTKD 237 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 999999877
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.66 E-value=1.6e-12 Score=136.36 Aligned_cols=312 Identities=14% Similarity=0.148 Sum_probs=192.3
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHcCCC-CCChHHHHHHHHHHhhhcCCC----------hhhHHHHHHHHHhcCCh
Q 011081 106 SSYATIIHILSRARLIGPARDVIRVALRSPE-NDPKLKLFEVLVKTYRECGSA----------PFVFDLLIKCCLEVKNI 174 (494)
Q Consensus 106 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~----------~~~~~~li~~~~~~~~~ 174 (494)
.--...+++|...|++.+|+++++.++..+. +.....+-+.++.+.-+..+. ......+...+...|.
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lgl- 1064 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNEL- 1064 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCC-
Confidence 3344566777788888888888888875432 223333444444433333221 1112335666777777
Q ss_pred hcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHH
Q 011081 175 EKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALM 254 (494)
Q Consensus 175 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li 254 (494)
+++|.++|++.. -.....+.++. ..+++++|.+++++.. +..+|..+.
T Consensus 1065 --yEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn----------------------~p~vWsqLA 1112 (1630)
T 1xi4_A 1065 --FEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN----------------------EPAVWSQLA 1112 (1630)
T ss_pred --HHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC----------------------CHHHHHHHH
Confidence 888888887752 12222233322 5566777777776551 466777788
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHH
Q 011081 255 VGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMA 334 (494)
Q Consensus 255 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 334 (494)
.++.+.|++++|++.|.+. -|...|..++..|.+.|++++|.+.+...++.. ++....+.++.+|++.++++
T Consensus 1113 KAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rle 1184 (1630)
T 1xi4_A 1113 KAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLA 1184 (1630)
T ss_pred HHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHH
Confidence 8888888888888877543 356677778888888888888888887766653 33333445777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 335 RAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARV 414 (494)
Q Consensus 335 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 414 (494)
+...+. . .++...|..+...|...|++++|..+|... ..|..+...+++.|++++|.+.+++.
T Consensus 1185 ele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA- 1247 (1630)
T 1xi4_A 1185 ELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA- 1247 (1630)
T ss_pred HHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-
Confidence 533332 1 345566666777777777777777777774 36777777777777777777777632
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 415 VKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFE 486 (494)
Q Consensus 415 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 486 (494)
.+..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++..+.
T Consensus 1248 ------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1248 ------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred ------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3445666666666666666666554432 233444555666666666666666666655543
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=4.4e-14 Score=126.94 Aligned_cols=225 Identities=9% Similarity=0.004 Sum_probs=171.7
Q ss_pred hhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccc
Q 011081 159 FVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVK 238 (494)
Q Consensus 159 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 238 (494)
.++..+...+...|+ +++|++.|++..+.. .+..++..+..++...|++++|.+.|+++....+.
T Consensus 6 ~~~~~~g~~~~~~~~---~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---------- 70 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQ---FDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE---------- 70 (258)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhcc---HHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc----------
Confidence 466778888999999 999999999999987 68899999999999999999999999999764332
Q ss_pred cccccccC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011081 239 RVVRVRPN----VHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVE 314 (494)
Q Consensus 239 ~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 314 (494)
..++ ..+|..+...+.+.|++++|...|++..+. .|+. ..+.+.|++++|...++.+.... +
T Consensus 71 ----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~ 136 (258)
T 3uq3_A 71 ----MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-P 136 (258)
T ss_dssp ----TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-H
T ss_pred ----cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-c
Confidence 0111 688899999999999999999999998875 3442 34666777888888888887763 3
Q ss_pred CCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 011081 315 HDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLI 394 (494)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 394 (494)
.+...|..+...|...|++++|...|++..+.. +.+...|..+...|...|++++|...|+..++.. +.+...+..+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~ 214 (258)
T 3uq3_A 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKA 214 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHH
Confidence 355677777788888888888888888877654 4466777777777777777777777777776653 22455566666
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 011081 395 GELCDKRRVFEALDILKARV 414 (494)
Q Consensus 395 ~~~~~~~~~~~a~~~~~~~~ 414 (494)
..+...|++++|.+.++..+
T Consensus 215 ~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 215 TAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 66666666666666666544
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=2.5e-14 Score=125.34 Aligned_cols=194 Identities=11% Similarity=0.012 Sum_probs=82.1
Q ss_pred ChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011081 195 KVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMA 274 (494)
Q Consensus 195 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (494)
+...+..+...+.+.|++++|...|++.+..+|. +...|..+...+.+.|++++|+..|++..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al 66 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-----------------DPEALYWLARTQLKLGLVNPALENGKTLV 66 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444445555555555555555555444332 44445555555555555555555555554
Q ss_pred HcCCCcCHhHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 011081 275 RLGCEPDCYSYSVLMAVFCEE-----------RRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREM 343 (494)
Q Consensus 275 ~~g~~p~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 343 (494)
+.. +.+...+..+...+.+. |++++|...|++..+.. +.+...|..+..+|...|++++|+..|++.
T Consensus 67 ~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 144 (217)
T 2pl2_A 67 ART-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQA 144 (217)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 442 22334444444444444 44444444444444332 123334444444444444444444444444
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 011081 344 GLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDIL 410 (494)
Q Consensus 344 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 410 (494)
.+.. .+...+..+...|...|++++|...|+..++.. +.+...+..+...+...|++++|+..+
T Consensus 145 l~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~ 208 (217)
T 2pl2_A 145 LALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAA 208 (217)
T ss_dssp HHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-----------
T ss_pred Hhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 4433 334444444444444444444444444444332 112333333444444444444444443
No 38
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=8.3e-13 Score=120.02 Aligned_cols=226 Identities=12% Similarity=0.066 Sum_probs=200.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCE----ERRMREAEKLWEEMRDKNVEHDVVAYN 321 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~ 321 (494)
+..++..+...|...|++++|+..|++..+.+ +..++..+...|.. .+++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 67788899999999999999999999998843 56788889999999 999999999999999886 788999
Q ss_pred HHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 011081 322 TIIGGFCE----IGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCR----AGDVDSAILVYNDMCRKGFEPEGSTIEVL 393 (494)
Q Consensus 322 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 393 (494)
.+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 99999999 999999999999999875 67889999999999 999999999999999976 56677778
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011081 394 IGELCD----KRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCE----EGKMEEALKVQAEMVGKGFEPSLEIYSAFI 465 (494)
Q Consensus 394 i~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 465 (494)
...|.. .+++++|+..|++.... .+...+..+...|.. .+++++|.+.|++..+.+ +...+..+.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 888888 89999999999976654 256778888999999 999999999999999864 367788888
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHcccc
Q 011081 466 DGYMK----EGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 466 ~~~~~----~g~~~~a~~~~~~m~~~~~~ 490 (494)
..|.+ .|++++|.+.+++..+.++.
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 89998 99999999999999988764
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.64 E-value=5.7e-14 Score=127.51 Aligned_cols=235 Identities=7% Similarity=-0.025 Sum_probs=147.5
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 011081 198 TCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLG 277 (494)
Q Consensus 198 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 277 (494)
.+......+...|++++|.+.|+++.+..+. +...|..+...|.+.|++++|+..+++..+.+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 67 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-----------------SPYIYNRRAVCYYELAKYDLAQKDIETYFSKV 67 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-----------------CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-----------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc
Confidence 3444556666677777777777777655432 34456666667777777777777777766632
Q ss_pred CCcC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011081 278 CEPD--CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTF 355 (494)
Q Consensus 278 ~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 355 (494)
-.++ ..+|..+...+...|++++|.+.|+...+.. +.+..+|..+...|...|++++|.+.|++..+.. +.+...|
T Consensus 68 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~ 145 (272)
T 3u4t_A 68 NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVF 145 (272)
T ss_dssp CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHH
T ss_pred CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHH
Confidence 1111 2236667777777777777777777776653 3355667777777777777777777777776653 4455566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCCCC------HHHH
Q 011081 356 EHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRR---VFEALDILKARVVKFGLFPT------EKSY 426 (494)
Q Consensus 356 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~p~------~~~~ 426 (494)
..+...+...+++++|.+.|+++.+.. +.+...+..+...+...++ .++|...+++.+....-.|+ ...|
T Consensus 146 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 224 (272)
T 3u4t_A 146 YELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEAN 224 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 666623334457777777777776653 2234555556666666666 66666666655544322233 2456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 427 MFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
..+...|.+.|++++|.+.|++..+.
T Consensus 225 ~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 225 EYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66777777788888888888887754
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=3.1e-14 Score=124.72 Aligned_cols=199 Identities=9% Similarity=-0.050 Sum_probs=163.8
Q ss_pred ChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccc
Q 011081 157 APFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKD 236 (494)
Q Consensus 157 ~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 236 (494)
++..+..+...+.+.|+ +++|+..|++..+.... +...+..+..++.+.|++++|...|++..+.+|.
T Consensus 4 ~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-------- 71 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGR---YDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPR-------- 71 (217)
T ss_dssp CCHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------
T ss_pred cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------
Confidence 45677788888999999 99999999999986544 7888999999999999999999999999886654
Q ss_pred cccccccccCHHHHHHHHHHHHhc-----------CCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHH
Q 011081 237 VKRVVRVRPNVHTFNALMVGFYRE-----------GAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLW 305 (494)
Q Consensus 237 ~~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 305 (494)
+...|..+...+.+. |++++|+..|++..+.. +-+...+..+...+...|++++|+..|
T Consensus 72 ---------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~ 141 (217)
T 2pl2_A 72 ---------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASL 141 (217)
T ss_dssp ---------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHH
Confidence 788999999999999 99999999999998874 346778899999999999999999999
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 306 EEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 306 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
++..+.. .+...+..+..+|...|++++|...|++..+.. +.+...+..+...+...|++++|...|++...
T Consensus 142 ~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 142 KQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred HHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 9998886 688999999999999999999999999998875 56788899999999999999999999987643
No 41
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.63 E-value=1.2e-12 Score=137.25 Aligned_cols=350 Identities=12% Similarity=0.099 Sum_probs=250.5
Q ss_pred CCCCChhHHHHHH--HhhccCchhhhHHHHhhhcc-CCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCC-----CC
Q 011081 66 RSGLTPTQFSQIA--LGLKNNPHLALRFFSFTQHK-SLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSP-----EN 137 (494)
Q Consensus 66 ~~~~~~~~~~~~~--~~~~~~~~~a~~~f~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~ 137 (494)
+.+..|+.+.... +...+.|..|+++++.+... ..|.-+....+.++.+..+. +.....+.....-..- ..
T Consensus 980 ~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d~~eIA~I 1058 (1630)
T 1xi4_A 980 SETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPDIANI 1058 (1630)
T ss_pred ccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhccHHHHHHH
Confidence 4456777776554 34578899999999988533 22444556777777777666 3444444444422100 00
Q ss_pred CChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHH
Q 011081 138 DPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYE 217 (494)
Q Consensus 138 ~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 217 (494)
......+......|.+++......+.++. ..++ +++|.++.++. -+..+|..+..++.+.|++++|.+
T Consensus 1059 ai~lglyEEAf~IYkKa~~~~~A~~VLie---~i~n---ldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDVNTSAVQVLIE---HIGN---LDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCCHHHHHHHHHH---HHhh---HHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 01122334444455555544444444443 5566 88888887755 257888899999999999999999
Q ss_pred HHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCC
Q 011081 218 IYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERR 297 (494)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 297 (494)
.|.+. -|...|..++..+.+.|++++|.++|...++.. ++....+.++.+|++.++
T Consensus 1127 sYiKA----------------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1127 SYIKA----------------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNR 1182 (1630)
T ss_pred HHHhc----------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcC
Confidence 99775 167888889999999999999999998877654 344444469999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 298 MREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYND 377 (494)
Q Consensus 298 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 377 (494)
+++...+ .+ .++...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++
T Consensus 1183 leele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1183 LAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred HHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8864433 22 457778888999999999999999999985 4899999999999999999999997
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-
Q 011081 378 MCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEP- 456 (494)
Q Consensus 378 m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p- 456 (494)
. -+..+|..+..+|...|++..|..... ++..+...+..++..|.+.|.+++|+.+++..+. +.+
T Consensus 1247 A------~n~~aWkev~~acve~~Ef~LA~~cgl------~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~--Lera 1312 (1630)
T 1xi4_A 1247 A------NSTRTWKEVCFACVDGKEFRLAQMCGL------HIVVHADELEELINYYQDRGYFEELITMLEAALG--LERA 1312 (1630)
T ss_pred h------CCHHHHHHHHHHHhhhhHHHHHHHHHH------hhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChh
Confidence 6 356889989999999999999988754 2334666788999999999999999999988874 343
Q ss_pred CHHHHHHHHHHHHhc--CCHHHHHHHHH
Q 011081 457 SLEIYSAFIDGYMKE--GNVEMATMLRK 482 (494)
Q Consensus 457 ~~~~~~~li~~~~~~--g~~~~a~~~~~ 482 (494)
....|+-|...|++. ++..++.++|.
T Consensus 1313 H~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1313 HMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345666666666654 34444444444
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=2.9e-13 Score=121.35 Aligned_cols=195 Identities=11% Similarity=0.026 Sum_probs=86.4
Q ss_pred HhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 011081 197 STCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARL 276 (494)
Q Consensus 197 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 276 (494)
..+..+...+...|++++|.+.|+++....+. +..+|..+...|.+.|++++|.+.++++.+.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 100 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-----------------SADAHAALAVVFQTEMEPKLADEEYRKALAS 100 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444444555555555555555555433221 3444555555555555555555555554443
Q ss_pred CCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011081 277 GCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEH-DVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTF 355 (494)
Q Consensus 277 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 355 (494)
. +.+...+..+...|...|++++|.++++++.+.+..| +...+..+...|.+.|++++|.+.|+++.+.. +.+...+
T Consensus 101 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 178 (252)
T 2ho1_A 101 D-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVA 178 (252)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHH
T ss_pred C-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHH
Confidence 2 2233444444444555555555555555444411112 23344444444444444444444444444332 2233444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011081 356 EHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILK 411 (494)
Q Consensus 356 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 411 (494)
..+...|...|++++|...++.+.+.. +.+...+..+...+...|+.++|.+.++
T Consensus 179 ~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 233 (252)
T 2ho1_A 179 LEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGL 233 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 444444444444444444444444322 1223333333333444444444444443
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=4.3e-13 Score=120.24 Aligned_cols=201 Identities=13% Similarity=0.055 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG 326 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 326 (494)
...|..+...+...|++++|..+|+++.+.. +.+..++..+...|...|++++|.+.++++.+.. +.+...|..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 6778888888999999999999999888764 4467788888888888999999999998887764 3467788888888
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 011081 327 FCEIGEMARAEEFFREMGLSGVES-SSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFE 405 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 405 (494)
|...|++++|.++|+++.+.+..| +...+..+...|...|++++|...|+++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888887732233 55677778888888888888888888887754 2346667777777777888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 406 ALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 406 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
|...++..+... +.+...+..+...+...|+.++|.++++++.+.
T Consensus 194 A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG--GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888777554432 245566677777777778888888777777754
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=3.8e-14 Score=128.82 Aligned_cols=249 Identities=8% Similarity=-0.073 Sum_probs=193.4
Q ss_pred HcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHH
Q 011081 207 SRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYS 286 (494)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 286 (494)
...|++++|.+.|+++.+..+. ....+..+|..+...+...|++++|...|+++.+.. +.+..+|.
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~ 81 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRAL-------------TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFN 81 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCC-------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHH
T ss_pred CccchHHHHHHHHHHHHhcccc-------------cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHH
Confidence 3457889999999999765221 002267889999999999999999999999998875 44688999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011081 287 VLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAG 366 (494)
Q Consensus 287 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 366 (494)
.+...|...|++++|.+.|+++.+.. +.+..+|..+..+|.+.|++++|.+.|+++.+.. |+.......+..+...|
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~ 158 (275)
T 1xnf_A 82 YLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKL 158 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhc
Confidence 99999999999999999999998864 4468899999999999999999999999998863 44444444555667779
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHH
Q 011081 367 DVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPT-----EKSYMFLIKGLCEEGKMEE 441 (494)
Q Consensus 367 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~ 441 (494)
++++|...++...... +++... ..++..+...++.++|++.+...+.. .|+ ...+..+...|.+.|++++
T Consensus 159 ~~~~A~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~ 233 (275)
T 1xnf_A 159 DEKQAKEVLKQHFEKS-DKEQWG-WNIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDS 233 (275)
T ss_dssp CHHHHHHHHHHHHHHS-CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHhcC-CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHH
Confidence 9999999998887753 334333 44777788888999999998854422 232 4678889999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011081 442 ALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLR 481 (494)
Q Consensus 442 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 481 (494)
|...|++..+. .|+. +.....++...|++++|.+.+
T Consensus 234 A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 234 ATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 99999999965 4532 233355777888999988776
No 45
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=6.7e-13 Score=130.83 Aligned_cols=351 Identities=11% Similarity=-0.025 Sum_probs=221.1
Q ss_pred HHHhhccCchhhhHHHHhhhc-------cCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHH
Q 011081 77 IALGLKNNPHLALRFFSFTQH-------KSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVK 149 (494)
Q Consensus 77 ~~~~~~~~~~~a~~~f~~~~~-------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 149 (494)
.+....|+.+.|++.|..+.. ...-+....+|+.+..++...|++++|...++.+.+-.. ....
T Consensus 59 ~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~---------~~~~ 129 (472)
T 4g1t_A 59 YLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE---------KFSS 129 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------HSCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH---------hccc
Confidence 445667899999998887632 111133467899999999999999999999988765100 0000
Q ss_pred HhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHH---HHcCCChhHHHHHHHHHhcCC
Q 011081 150 TYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWE---VSRGKGVISGYEIYREVFGLD 226 (494)
Q Consensus 150 ~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~ 226 (494)
......+.++..+..++...|. ..+++|++.|++..+.... ++..+..+..+ +...++.++|.+.|++..+.+
T Consensus 130 --~~~~~~~~~~~~~g~~~~~~~~-~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 130 --PYRIESPELDCEEGWTRLKCGG-NQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp --SSCCCCHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred --ccchhhHHHHHHHHHHHHHHcc-ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 0001123455555555554432 1289999999999886533 45555555544 445677888999999887765
Q ss_pred cccccccccccccccccccCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHH
Q 011081 227 SDATAGIGKDVKRVVRVRPNVHTFNALMVGFYR----EGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAE 302 (494)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 302 (494)
+. +..++..+...+.. .|++++|.+++++..... +.+..++..+...|.+.|++++|.
T Consensus 206 p~-----------------~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~ 267 (472)
T 4g1t_A 206 PD-----------------NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAI 267 (472)
T ss_dssp SS-----------------CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred Cc-----------------chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHH
Confidence 43 56666666555544 457788999998887764 456677888899999999999999
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHcc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011081 303 KLWEEMRDKNVEHDVVAYNTIIGGFCEI-------------------GEMARAEEFFREMGLSGVESSSVTFEHLVNGYC 363 (494)
Q Consensus 303 ~~~~~m~~~g~~~~~~~~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 363 (494)
..+++..+.. +.+..++..+..+|... +.+++|...|++..+.. +.+..++..+...|.
T Consensus 268 ~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 268 ELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHH
T ss_pred HHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHH
Confidence 9999888763 34566777776665432 23567777787777654 455667888888999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChh--hHHHHHH-HHHhcCCHHHHHHHHHHHHHhCC----------------------
Q 011081 364 RAGDVDSAILVYNDMCRKGFEPEGS--TIEVLIG-ELCDKRRVFEALDILKARVVKFG---------------------- 418 (494)
Q Consensus 364 ~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~---------------------- 418 (494)
..|++++|...|++.++....+... .+..+.. .....|+.++|+..|.+.+.-..
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~ 425 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSK 425 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988765433221 1222222 23467888888888876553211
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHH
Q 011081 419 LFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKG-FEPSLEI 460 (494)
Q Consensus 419 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~ 460 (494)
-+.+..+|..+..+|...|++++|++.|++.++.+ ..|+...
T Consensus 426 ~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 426 NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp CC-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 12345678889999999999999999999998763 3344443
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=9.1e-13 Score=115.56 Aligned_cols=203 Identities=8% Similarity=0.001 Sum_probs=154.8
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
+...|..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|.+.++.+.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 56778888888899999999999998888764 4457788888888888999999999988887764 446778888888
Q ss_pred HHHcc-CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 011081 326 GFCEI-GEMARAEEFFREMGLSGVES-SSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRV 403 (494)
Q Consensus 326 ~~~~~-g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 403 (494)
.|... |++++|...|+++.+.+..| +...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 88888 88888888888888732223 35677788888888888888888888887754 23466777777778888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 404 FEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 404 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
++|...+++.+.... ..+...+..+...+...|+.+.|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVE-VLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 888888876555432 135556666777777788888888888777643
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.61 E-value=1.4e-13 Score=124.84 Aligned_cols=239 Identities=9% Similarity=0.012 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhHHHHHHH
Q 011081 248 HTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD--VVAYNTIIG 325 (494)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~ 325 (494)
..+......+.+.|++++|+..|++..+.. +.+...+..+...|...|++++|...++...+.+..++ ..+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 445667788999999999999999998874 33555888899999999999999999999988432222 334899999
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 011081 326 GFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFE 405 (494)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 405 (494)
.|...|++++|++.|++..+.. +.+...|..+...|...|++++|...|++.++.. +.+...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998865 4566889999999999999999999999998763 3355666666634455669999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHhcCCHH
Q 011081 406 ALDILKARVVKFGLFPTEKSYMFLIKGLCEEGK---MEEALKVQAEMVGKG-FEPS------LEIYSAFIDGYMKEGNVE 475 (494)
Q Consensus 406 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~p~------~~~~~~li~~~~~~g~~~ 475 (494)
|.+.|++.+.... .+...+..+..++...|+ .++|...+++..+.. -.|+ ...|..+...|...|+++
T Consensus 161 A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 161 ADSSFVKVLELKP--NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHST--TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCc--cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999998776642 346677778888888888 888888888887641 1233 267888899999999999
Q ss_pred HHHHHHHHHHHccccc
Q 011081 476 MATMLRKEMFENQVRQ 491 (494)
Q Consensus 476 ~a~~~~~~m~~~~~~p 491 (494)
+|.+.+++.++.++..
T Consensus 239 ~A~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 239 KADAAWKNILALDPTN 254 (272)
T ss_dssp HHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcCccH
Confidence 9999999999977643
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=1e-12 Score=115.21 Aligned_cols=206 Identities=11% Similarity=-0.056 Sum_probs=176.7
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011081 281 DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVN 360 (494)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 360 (494)
+...+..+...+...|++++|.+.++.+.+.. +.+...|..+...|...|++++|.+.|+++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45678889999999999999999999998764 4568899999999999999999999999998865 557888999999
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011081 361 GYCRA-GDVDSAILVYNDMCRKGFEP-EGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGK 438 (494)
Q Consensus 361 ~~~~~-g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 438 (494)
.|... |++++|...++.+.+.+..| +...+..+...+...|++++|...+++.+.... .+...+..+...+.+.|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP--QFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCchHHHHHHHHHHHcCC
Confidence 99999 99999999999998833333 356788889999999999999999997776542 357788999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 439 MEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 439 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
+++|.++++++.+..-..+...+..+...+...|+.++|..+++.+.+..+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 214 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY 214 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence 9999999999987632156778888888899999999999999999876553
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.60 E-value=3.6e-13 Score=127.81 Aligned_cols=247 Identities=10% Similarity=0.034 Sum_probs=174.4
Q ss_pred HhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCC-HhHHHHHHHHHHH
Q 011081 197 STCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGA-FEKVEDVWVEMAR 275 (494)
Q Consensus 197 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~ 275 (494)
..|+.+..++.+.|++++|++.|++++..++. +..+|+.+...+.+.|+ +++|+..|++..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-----------------~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~ 160 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-----------------NYTVWHFRRVLLKSLQKDLHEEMNYITAIIE 160 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-----------------CHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 44556666677777788888888877765544 67778888888888885 8888888888777
Q ss_pred cCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011081 276 LGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTF 355 (494)
Q Consensus 276 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 355 (494)
.. +-+...|+.+..++.+.|++++|+..|+++++.. +-+..+|..+..++.+.|++++|+..|+++.+.. +-+...|
T Consensus 161 l~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~ 237 (382)
T 2h6f_A 161 EQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVW 237 (382)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHH
Confidence 64 3356777778888888888888888888877764 4467778888888888888888888888887765 4567778
Q ss_pred HHHHHHHHh-cCCHHHH-----HHHHHHHHHCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCCCHHHHH
Q 011081 356 EHLVNGYCR-AGDVDSA-----ILVYNDMCRKGFEPEGSTIEVLIGELCDKR--RVFEALDILKARVVKFGLFPTEKSYM 427 (494)
Q Consensus 356 ~~li~~~~~-~g~~~~a-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~p~~~~~~ 427 (494)
+.+...+.. .|..++| +..|++.++.. +-+...|+.+...+...| ++++|++.+.+ + .....+...+.
T Consensus 238 ~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~-~--~~~p~~~~al~ 313 (382)
T 2h6f_A 238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLD-L--QPSHSSPYLIA 313 (382)
T ss_dssp HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHH-H--TTTCCCHHHHH
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHH-h--ccCCCCHHHHH
Confidence 888777777 5554666 47777777754 225567777777777777 57788887764 3 22334566777
Q ss_pred HHHHHHHhcC---------CHHHHHHHHHHH-HhCCCCCC-HHHHHHHHHHHH
Q 011081 428 FLIKGLCEEG---------KMEEALKVQAEM-VGKGFEPS-LEIYSAFIDGYM 469 (494)
Q Consensus 428 ~li~~~~~~g---------~~~~A~~~~~~m-~~~~~~p~-~~~~~~li~~~~ 469 (494)
.+..+|.+.| .+++|.++++++ .+ +.|. ...|..+...+.
T Consensus 314 ~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 314 FLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHH
Confidence 8888887764 258888888888 54 3554 445555555443
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=4.2e-14 Score=128.52 Aligned_cols=243 Identities=9% Similarity=-0.042 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHhCCCC---cChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHH
Q 011081 177 IETCVDIVRMLMSRGLS---VKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNAL 253 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 253 (494)
+++|++.++.+.+.... .+..++..+...+...|++++|.+.|+++....+. +..+|..+
T Consensus 21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-----------------~~~~~~~l 83 (275)
T 1xnf_A 21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-----------------MPEVFNYL 83 (275)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----------------CHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-----------------cHHHHHHH
Confidence 99999999999986421 24677889999999999999999999999876543 68899999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCH
Q 011081 254 MVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEM 333 (494)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 333 (494)
...|...|++++|...|++..+.. +.+..++..+...|.+.|++++|...|+.+.+. .|+.......+..+...|++
T Consensus 84 a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~ 160 (275)
T 1xnf_A 84 GIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDE 160 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCH
Confidence 999999999999999999998874 446788999999999999999999999999886 35555555566666778999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHH
Q 011081 334 ARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEP---EGSTIEVLIGELCDKRRVFEALDIL 410 (494)
Q Consensus 334 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~ 410 (494)
++|...+++..... +++...+. ++..+...++.++|...++...+..... +..++..+...+...|++++|...|
T Consensus 161 ~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 238 (275)
T 1xnf_A 161 KQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALF 238 (275)
T ss_dssp HHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999998887764 44444444 6777788888999999999887653211 2577888999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011081 411 KARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQ 446 (494)
Q Consensus 411 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 446 (494)
++.+.. .|+. +.....++...|++++|++-+
T Consensus 239 ~~al~~---~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 239 KLAVAN---NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHTT---CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHhC---Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 976654 2432 233455677888888887766
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.59 E-value=3.4e-12 Score=115.96 Aligned_cols=224 Identities=13% Similarity=0.099 Sum_probs=195.6
Q ss_pred ChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHh----cCCHhHHHHHH
Q 011081 195 KVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYR----EGAFEKVEDVW 270 (494)
Q Consensus 195 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~ 270 (494)
++.++..+...+...|++++|.+.|++..+. -+..++..+...|.. .+++++|+..|
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------------------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~ 65 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-------------------KENSGCFNLGVLYYQGQGVEKNLKKAASFY 65 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-------------------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHH
Confidence 5667788888999999999999999999762 256788889999999 99999999999
Q ss_pred HHHHHcCCCcCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc----cCCHHHHHHHHHH
Q 011081 271 VEMARLGCEPDCYSYSVLMAVFCE----ERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCE----IGEMARAEEFFRE 342 (494)
Q Consensus 271 ~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~ 342 (494)
++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +..++..+...|.. .+++++|+..|++
T Consensus 66 ~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~ 139 (273)
T 1ouv_A 66 AKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTK 139 (273)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 9999876 77888999999999 999999999999999875 78899999999999 9999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 011081 343 MGLSGVESSSVTFEHLVNGYCR----AGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCD----KRRVFEALDILKARV 414 (494)
Q Consensus 343 m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~ 414 (494)
..+.+ +...+..+...|.. .+++++|...|+...+.+ +...+..+...|.. .+++++|++.+++.+
T Consensus 140 a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 213 (273)
T 1ouv_A 140 ACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKAC 213 (273)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH
T ss_pred HHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence 99876 56778888888888 899999999999999875 45677888888989 999999999999766
Q ss_pred HhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 011081 415 VKFGLFPTEKSYMFLIKGLCE----EGKMEEALKVQAEMVGKG 453 (494)
Q Consensus 415 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 453 (494)
.. + +...+..+...|.+ .+++++|.+.|++..+.|
T Consensus 214 ~~-~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 214 EL-E---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HT-T---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred hC-C---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 54 2 36677888888988 999999999999998764
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=1.9e-13 Score=121.60 Aligned_cols=194 Identities=10% Similarity=0.053 Sum_probs=80.7
Q ss_pred HhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 011081 197 STCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARL 276 (494)
Q Consensus 197 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 276 (494)
..|..+...+...|++++|...|+++....+. +...+..+...+.+.|++++|+..+++..+.
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 86 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-----------------DAIPYINFANLLSSVNELERALAFYDKALEL 86 (243)
T ss_dssp ------------------CCTTHHHHHTTCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 33444444455555555555555555443322 3444555555555555555555555555443
Q ss_pred CCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011081 277 GCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFE 356 (494)
Q Consensus 277 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 356 (494)
. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.+.++++.+.. +.+...+.
T Consensus 87 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 163 (243)
T 2q7f_A 87 D-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARF 163 (243)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHH
Confidence 2 2234444445555555555555555555544432 2234444444455555555555555555444432 22344444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011081 357 HLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILK 411 (494)
Q Consensus 357 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 411 (494)
.+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.+.++
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 217 (243)
T 2q7f_A 164 QFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLD 217 (243)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 44444444444444444444444332 1123333444444444444444444444
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=4.3e-13 Score=127.32 Aligned_cols=236 Identities=9% Similarity=0.041 Sum_probs=200.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHhHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERR-MREAEKLWEEMRDKNVEHDVVAYNTII 324 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li 324 (494)
+...|+.+...+.+.|++++|+..+++.++.. +-+..+|+.+...+.+.|+ +++|+..|++..+.. +-+...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 56778889999999999999999999999875 4467889999999999997 999999999999875 45788999999
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCCH
Q 011081 325 GGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCD-KRRV 403 (494)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~~~~ 403 (494)
.+|.+.|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..|+++++.+. -+...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999876 66889999999999999999999999999999763 367889999999988 6665
Q ss_pred HHH-----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----
Q 011081 404 FEA-----LDILKARVVKFGLFPTEKSYMFLIKGLCEEG--KMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEG---- 472 (494)
Q Consensus 404 ~~a-----~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---- 472 (494)
++| ++.+++.+... +-+...|..+..++...| ++++|.+.+.++ +. -..+...+..+...|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 777 47788777654 235668888888888888 689999999988 33 3446788899999998874
Q ss_pred ----C-HHHHHHHHHHH-HHccc
Q 011081 473 ----N-VEMATMLRKEM-FENQV 489 (494)
Q Consensus 473 ----~-~~~a~~~~~~m-~~~~~ 489 (494)
+ .++|.++++++ .+.++
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP 350 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDT 350 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCG
T ss_pred cchHHHHHHHHHHHHHHHHHhCc
Confidence 2 58999999999 77655
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=1.4e-13 Score=122.49 Aligned_cols=202 Identities=12% Similarity=0.086 Sum_probs=161.8
Q ss_pred ChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccc
Q 011081 157 APFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKD 236 (494)
Q Consensus 157 ~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 236 (494)
.+.+|..+...+...|+ +++|++.|+++.+.... +...+..+...+...|++++|.+.|+++....+.
T Consensus 22 ~~~~~~~~a~~~~~~~~---~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-------- 89 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGD---YEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDSS-------- 89 (243)
T ss_dssp -----------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------
T ss_pred HHHHHHHHHHHHHHhhC---HHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc--------
Confidence 45667778888889999 99999999999886533 6788999999999999999999999999775432
Q ss_pred cccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011081 237 VKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD 316 (494)
Q Consensus 237 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 316 (494)
+..+|..+...+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++.+.. +.+
T Consensus 90 ---------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~ 158 (243)
T 2q7f_A 90 ---------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-END 158 (243)
T ss_dssp ---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTC
T ss_pred ---------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-Ccc
Confidence 78889999999999999999999999998875 4577889999999999999999999999998764 457
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011081 317 VVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 382 (494)
...+..+...|.+.|++++|.+.|+++.+.. +.+..++..+...|...|++++|...++++.+..
T Consensus 159 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 159 TEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 8899999999999999999999999998875 5668889999999999999999999999998864
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.56 E-value=2e-13 Score=131.98 Aligned_cols=274 Identities=14% Similarity=0.049 Sum_probs=171.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 011081 199 CNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPN--VHTFNALMVGFYREGAFEKVEDVWVEMARL 276 (494)
Q Consensus 199 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 276 (494)
+..+...+...|++++|.+.|+++....+. .+. ...|..+...|...|++++|+..+++..+.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~---------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE---------------DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL 115 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS---------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc---------------ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344555666677777777777777654322 111 245667777777777777777777766543
Q ss_pred ----C-CCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHhHHHHHHHHHHccCC--------------
Q 011081 277 ----G-CEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK----N-VEHDVVAYNTIIGGFCEIGE-------------- 332 (494)
Q Consensus 277 ----g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~~~~~~~~~li~~~~~~g~-------------- 332 (494)
+ ......++..+...|...|++++|...+++..+. + ......++..+...|...|+
T Consensus 116 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a 195 (411)
T 4a1s_A 116 AKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV 195 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred HHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhh
Confidence 1 1123345666777777777777777777766443 1 11234466677777777777
Q ss_pred ---HHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHh
Q 011081 333 ---MARAEEFFREMGLS----GV-ESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFE-PE----GSTIEVLIGELCD 399 (494)
Q Consensus 333 ---~~~A~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~ 399 (494)
+++|.+.+++..+. +. .....++..+...|...|++++|...+++..+.... .+ ..++..+...+..
T Consensus 196 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 275 (411)
T 4a1s_A 196 KEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF 275 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 77777777765432 11 112346667777777888888888887776653110 01 2256677777788
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHh
Q 011081 400 KRRVFEALDILKARVVKFGLFPT----EKSYMFLIKGLCEEGKMEEALKVQAEMVGK----GFE-PSLEIYSAFIDGYMK 470 (494)
Q Consensus 400 ~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~~~~~li~~~~~ 470 (494)
.|++++|.+.+++.+....-..+ ..++..+...|...|++++|.+.+++..+. +.. ....++..+...|..
T Consensus 276 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 355 (411)
T 4a1s_A 276 LGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA 355 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Confidence 88888888887765543211111 346677777888888888888888877653 101 113466777778888
Q ss_pred cCCHHHHHHHHHHHHHc
Q 011081 471 EGNVEMATMLRKEMFEN 487 (494)
Q Consensus 471 ~g~~~~a~~~~~~m~~~ 487 (494)
.|++++|.+++++..+.
T Consensus 356 ~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 356 IGGHERALKYAEQHLQL 372 (411)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHH
Confidence 88888888888877664
No 56
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.56 E-value=2.7e-13 Score=126.67 Aligned_cols=275 Identities=12% Similarity=0.049 Sum_probs=166.6
Q ss_pred HHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc--
Q 011081 201 ALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPN--VHTFNALMVGFYREGAFEKVEDVWVEMARL-- 276 (494)
Q Consensus 201 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-- 276 (494)
.....+...|++++|...|+++....+. .+. ...|..+...|...|++++|...+++..+.
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 74 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTE---------------DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR 74 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS---------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcc---------------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 3445555666666666666666543221 111 345666666666667777666666665432
Q ss_pred --CCC-cCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HhHHHHHHHHHHccCC----------------
Q 011081 277 --GCE-PDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNV-EHD----VVAYNTIIGGFCEIGE---------------- 332 (494)
Q Consensus 277 --g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~---------------- 332 (494)
+-. ....++..+...+...|++++|...+++..+... .++ ..++..+...|...|+
T Consensus 75 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3ro2_A 75 TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPED 154 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHH
T ss_pred cccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhh
Confidence 111 1234556666666677777777776666543210 011 2356666667777777
Q ss_pred ----HHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCChhhHHHHHHHHH
Q 011081 333 ----MARAEEFFREMGLS----GV-ESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGF-----EPEGSTIEVLIGELC 398 (494)
Q Consensus 333 ----~~~A~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----~p~~~~~~~li~~~~ 398 (494)
+++|.+.+++.... +. ......+..+...|...|++++|...+++..+... .....++..+...+.
T Consensus 155 a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 234 (338)
T 3ro2_A 155 VRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI 234 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 77777776665432 11 11234566677777777888888887777654210 111235667777778
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHH
Q 011081 399 DKRRVFEALDILKARVVKFGLFPT----EKSYMFLIKGLCEEGKMEEALKVQAEMVGK----GFEP-SLEIYSAFIDGYM 469 (494)
Q Consensus 399 ~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~ 469 (494)
..|++++|...+++.+....-..+ ..++..+...|...|++++|.+.+++..+. +-.+ ...++..+...|.
T Consensus 235 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 314 (338)
T 3ro2_A 235 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 314 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 888888888887765543211112 446777788888889999999888887653 1111 1446777888888
Q ss_pred hcCCHHHHHHHHHHHHHcccc
Q 011081 470 KEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 470 ~~g~~~~a~~~~~~m~~~~~~ 490 (494)
+.|++++|.+++++..+....
T Consensus 315 ~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 315 ALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHTCHHHHHHHHHHHHHC---
T ss_pred HcCChHHHHHHHHHHHHHHHh
Confidence 999999999999988876443
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=3.2e-13 Score=130.55 Aligned_cols=277 Identities=12% Similarity=0.030 Sum_probs=211.0
Q ss_pred HHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcCh----HhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccc
Q 011081 161 FDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKV----STCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKD 236 (494)
Q Consensus 161 ~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 236 (494)
+..+...+...|+ +++|++.|++..+.+.. +. ..+..+...|...|++++|.+.|+++......
T Consensus 51 l~~~g~~~~~~g~---~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-------- 118 (411)
T 4a1s_A 51 LALEGERLCNAGD---CRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKS-------- 118 (411)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHhCc---HHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--------
Confidence 3345667888899 99999999999986543 33 46888899999999999999999988653110
Q ss_pred cccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----C-CCcCHhHHHHHHHHHHhcCC--------------
Q 011081 237 VKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARL----G-CEPDCYSYSVLMAVFCEERR-------------- 297 (494)
Q Consensus 237 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~p~~~~~~~li~~~~~~g~-------------- 297 (494)
.........++..+...|...|++++|...+++..+. + ......++..+...|...|+
T Consensus 119 ---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a 195 (411)
T 4a1s_A 119 ---MNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV 195 (411)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred ---ccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhh
Confidence 0011335678899999999999999999999987664 1 12234578888999999999
Q ss_pred ---HHHHHHHHHHHHhC----CC-CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHh
Q 011081 298 ---MREAEKLWEEMRDK----NV-EHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGV-ESS----SVTFEHLVNGYCR 364 (494)
Q Consensus 298 ---~~~a~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~ 364 (494)
+++|.+.+++..+. +. .....++..+...|...|++++|.+.|++..+... ..+ ..++..+...|..
T Consensus 196 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 275 (411)
T 4a1s_A 196 KEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF 275 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 99999999886542 11 11345788899999999999999999998865410 011 2378889999999
Q ss_pred cCCHHHHHHHHHHHHHCCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHh
Q 011081 365 AGDVDSAILVYNDMCRKGFE-----PEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPT----EKSYMFLIKGLCE 435 (494)
Q Consensus 365 ~g~~~~a~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~ 435 (494)
.|++++|...+++..+.... ....++..+...+...|++++|...+++.+....-..+ ..++..+...|..
T Consensus 276 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 355 (411)
T 4a1s_A 276 LGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA 355 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Confidence 99999999999988763211 12467788889999999999999999876643211122 3477888999999
Q ss_pred cCCHHHHHHHHHHHHhC
Q 011081 436 EGKMEEALKVQAEMVGK 452 (494)
Q Consensus 436 ~g~~~~A~~~~~~m~~~ 452 (494)
.|++++|.+.+++..+.
T Consensus 356 ~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 356 IGGHERALKYAEQHLQL 372 (411)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHH
Confidence 99999999999999864
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.55 E-value=4.6e-13 Score=128.90 Aligned_cols=278 Identities=12% Similarity=0.033 Sum_probs=157.8
Q ss_pred hhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcC----hHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccc
Q 011081 159 FVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVK----VSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIG 234 (494)
Q Consensus 159 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 234 (494)
..+......+...|+ +++|+..|++..+.+.. + ..++..+...+...|++++|...|+++......
T Consensus 10 ~~l~~~g~~~~~~g~---~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------ 79 (406)
T 3sf4_A 10 LELALEGERLCKSGD---CRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART------ 79 (406)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHhcc---HHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh------
Confidence 445556666777777 77777777777765332 2 245666677777777777777777777542211
Q ss_pred cccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CcC----HhHHHHHHHHHHhcCC------------
Q 011081 235 KDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGC-EPD----CYSYSVLMAVFCEERR------------ 297 (494)
Q Consensus 235 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~------------ 297 (494)
.........++..+...|...|++++|...+++..+... .++ ..++..+...|...|+
T Consensus 80 -----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 154 (406)
T 3sf4_A 80 -----IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGE 154 (406)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CC
T ss_pred -----ccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhh
Confidence 001111245566667777777777777777777665410 011 2356666666777777
Q ss_pred --------HHHHHHHHHHHHhC----CC-CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHH
Q 011081 298 --------MREAEKLWEEMRDK----NV-EHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGV-ESS----SVTFEHLV 359 (494)
Q Consensus 298 --------~~~a~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li 359 (494)
+++|...+++..+. +. .....++..+...|...|++++|...|++..+... .++ ..++..+.
T Consensus 155 ~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 234 (406)
T 3sf4_A 155 FPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLG 234 (406)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 77777766665431 11 11133566666666777777777777666553210 011 22556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHH
Q 011081 360 NGYCRAGDVDSAILVYNDMCRK----GFEP-EGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPT----EKSYMFLI 430 (494)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li 430 (494)
..|...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++.+....-..+ ..++..+.
T Consensus 235 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 314 (406)
T 3sf4_A 235 NAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLG 314 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 6666677777777766665542 1110 0334555566666666666666666654432211112 33455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 011081 431 KGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~ 451 (494)
..|...|++++|.+.+++..+
T Consensus 315 ~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 315 NAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666654
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.54 E-value=1.5e-11 Score=113.84 Aligned_cols=240 Identities=11% Similarity=0.087 Sum_probs=187.6
Q ss_pred CHHHHHHHHHHHHhc----CCH----hHHHHHHHHHHHcCCCcCHhHHHHHHHHHH-------hcCCH-------HHHHH
Q 011081 246 NVHTFNALMVGFYRE----GAF----EKVEDVWVEMARLGCEPDCYSYSVLMAVFC-------EERRM-------REAEK 303 (494)
Q Consensus 246 ~~~~~~~li~~~~~~----g~~----~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-------~~g~~-------~~a~~ 303 (494)
+...|...+..-.+. ++. ++|..+|++..+.. +-+...|..++..+. +.|++ ++|..
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 344566665544332 233 68889999988763 446778888887775 35886 89999
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011081 304 LWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESS-SV-TFEHLVNGYCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 304 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 381 (494)
+|++..+.-.+.+...|..++..+.+.|++++|.++|++..+. .|+ .. .|..++..+.+.|++++|..+|++.++.
T Consensus 86 ~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 86 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999998311446678999999999999999999999999985 443 33 8999999999999999999999999886
Q ss_pred CCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--C
Q 011081 382 GFEPEGSTIEVLIGELC-DKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKG-FEP--S 457 (494)
Q Consensus 382 ~~~p~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~ 457 (494)
+ +.+...|........ ..|+.++|..+|+..+...+ -+...|..++..+.+.|++++|..+|++.++.. +.| .
T Consensus 164 ~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~ 240 (308)
T 2ond_A 164 A-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 240 (308)
T ss_dssp T-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC
T ss_pred C-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHH
Confidence 5 234445544433322 37999999999998877643 357788999999999999999999999999863 455 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccccc
Q 011081 458 LEIYSAFIDGYMKEGNVEMATMLRKEMFENQVRQ 491 (494)
Q Consensus 458 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 491 (494)
...|..++....+.|+.++|..+++++.+..+..
T Consensus 241 ~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 241 GEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 7789999999999999999999999999877653
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.53 E-value=6.3e-13 Score=127.95 Aligned_cols=267 Identities=13% Similarity=0.086 Sum_probs=171.3
Q ss_pred HcCCCCCChHHHHHHHHHHhhhcCCC----hhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhC----CCCc-ChHhHHHH
Q 011081 132 LRSPENDPKLKLFEVLVKTYRECGSA----PFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSR----GLSV-KVSTCNAL 202 (494)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~l 202 (494)
...|....+...+...+.. ...+ ..++..+...+...|+ +++|.+.+++..+. +..| ...++..+
T Consensus 20 ~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 93 (406)
T 3sf4_A 20 CKSGDCRAGVSFFEAAVQV---GTEDLKTLSAIYSQLGNAYFYLHD---YAKALEYHHHDLTLARTIGDQLGEAKASGNL 93 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 3455555566666666653 2222 2456677778888888 88888888776542 2222 24567777
Q ss_pred HHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCC--------------------
Q 011081 203 IWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGA-------------------- 262 (494)
Q Consensus 203 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-------------------- 262 (494)
...|...|++++|...++++....+. .........++..+...|...|+
T Consensus 94 a~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~ 162 (406)
T 3sf4_A 94 GNTLKVLGNFDEAIVCCQRHLDISRE-----------LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA 162 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH-----------HTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHh-----------cccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH
Confidence 77888888888888888888664321 00001124567777788888888
Q ss_pred HhHHHHHHHHHHHc----CCCc-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HhHHHHHHHHHHccCC
Q 011081 263 FEKVEDVWVEMARL----GCEP-DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNV-EHD----VVAYNTIIGGFCEIGE 332 (494)
Q Consensus 263 ~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~ 332 (494)
+++|...+.+..+. +-.+ ...++..+...|...|++++|...+++..+... .++ ..+|..+...|...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 88888887776543 1111 234567777778888888888888877754310 111 2367777788888888
Q ss_pred HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCC
Q 011081 333 MARAEEFFREMGLS----GVES-SSVTFEHLVNGYCRAGDVDSAILVYNDMCRK----GFEP-EGSTIEVLIGELCDKRR 402 (494)
Q Consensus 333 ~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~ 402 (494)
+++|...+++..+. +..+ ...++..+...|...|++++|...+++..+. +..+ ...++..+...|...|+
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 88888888876543 1111 1456677777888888888888888877653 1111 14456677777788888
Q ss_pred HHHHHHHHHHHHH
Q 011081 403 VFEALDILKARVV 415 (494)
Q Consensus 403 ~~~a~~~~~~~~~ 415 (494)
+++|.+.+++.+.
T Consensus 323 ~~~A~~~~~~al~ 335 (406)
T 3sf4_A 323 HDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888776443
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.51 E-value=1.1e-12 Score=122.42 Aligned_cols=276 Identities=12% Similarity=0.044 Sum_probs=208.0
Q ss_pred HHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcC----hHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccc
Q 011081 162 DLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVK----VSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDV 237 (494)
Q Consensus 162 ~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 237 (494)
......+...|+ +++|+..++++.+.... + ...+..+...+...|++++|.+.++++......
T Consensus 9 ~~~g~~~~~~g~---~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------- 75 (338)
T 3ro2_A 9 ALEGERLCKSGD---CRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART--------- 75 (338)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHhcc---HHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---------
Confidence 344566788899 99999999999986433 3 367888899999999999999999988543110
Q ss_pred ccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CcC----HhHHHHHHHHHHhcCC---------------
Q 011081 238 KRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGC-EPD----CYSYSVLMAVFCEERR--------------- 297 (494)
Q Consensus 238 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------- 297 (494)
.........++..+...|...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 76 --~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3ro2_A 76 --IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPE 153 (338)
T ss_dssp --HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCH
T ss_pred --ccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhh
Confidence 000122467788999999999999999999998765411 112 3478888899999999
Q ss_pred -----HHHHHHHHHHHHhC----CC-CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHH
Q 011081 298 -----MREAEKLWEEMRDK----NV-EHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS----GV-ESSSVTFEHLVNGY 362 (494)
Q Consensus 298 -----~~~a~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~~~~~~~li~~~ 362 (494)
+++|.+.+++.... +. .....++..+...|...|++++|.+.+++..+. +. .....++..+...+
T Consensus 154 ~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 233 (338)
T 3ro2_A 154 DVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY 233 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 99999999876542 11 112457888899999999999999999987653 11 11233788888999
Q ss_pred HhcCCHHHHHHHHHHHHHCC----CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHH
Q 011081 363 CRAGDVDSAILVYNDMCRKG----FEP-EGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPT----EKSYMFLIKGL 433 (494)
Q Consensus 363 ~~~g~~~~a~~~~~~m~~~~----~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~ 433 (494)
...|++++|...+++..+.. ..+ ...++..+...+...|++++|...+++.+....-..+ ..++..+...|
T Consensus 234 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 313 (338)
T 3ro2_A 234 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY 313 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 99999999999999887531 111 1456778888999999999999999876543211122 44677889999
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 011081 434 CEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~ 452 (494)
.+.|++++|.+.+++..+.
T Consensus 314 ~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 314 TALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHC
T ss_pred HHcCChHHHHHHHHHHHHH
Confidence 9999999999999999864
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.50 E-value=2.9e-11 Score=111.89 Aligned_cols=219 Identities=8% Similarity=0.025 Sum_probs=177.2
Q ss_pred hHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHh-------cCCH-------hHHHHHHHHHHHcCC
Q 011081 213 ISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYR-------EGAF-------EKVEDVWVEMARLGC 278 (494)
Q Consensus 213 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~-------~g~~-------~~a~~~~~~m~~~g~ 278 (494)
++|..+|++++...|. +...|..++..+.. .|++ ++|..+|++..+.--
T Consensus 33 ~~a~~~~~~al~~~p~-----------------~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~ 95 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-----------------HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL 95 (308)
T ss_dssp HHHHHHHHHHHHHHTT-----------------CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHcCC-----------------CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC
Confidence 6788899998775443 78889888887763 5886 899999999987311
Q ss_pred CcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-Hh-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011081 279 EPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD-VV-AYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFE 356 (494)
Q Consensus 279 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 356 (494)
+-+...|..++..+.+.|++++|..+|++..+. .|+ .. +|..++..+.+.|++++|..+|++..+.. +.+...|.
T Consensus 96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~ 172 (308)
T 2ond_A 96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYV 172 (308)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHH
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 335668999999999999999999999999986 444 33 89999999999999999999999999875 34455555
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHH
Q 011081 357 HLVNGYC-RAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFP--TEKSYMFLIKGL 433 (494)
Q Consensus 357 ~li~~~~-~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~ 433 (494)
....... ..|+.++|..+|+..++.. +-+...|..++..+.+.|+.++|..+|++.+....+.| ....|..++..+
T Consensus 173 ~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~ 251 (308)
T 2ond_A 173 TAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 251 (308)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 4443322 3699999999999998863 33677889999999999999999999997776533454 467889999999
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 011081 434 CEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~ 452 (494)
.+.|+.++|..+++++.+.
T Consensus 252 ~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 252 SNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHSCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999865
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.49 E-value=6.6e-12 Score=106.60 Aligned_cols=165 Identities=14% Similarity=0.079 Sum_probs=83.1
Q ss_pred hHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 011081 196 VSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMAR 275 (494)
Q Consensus 196 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (494)
+.+|..+...|...|++++|.+.|++.++.+|. +..+|..+...|.+.|++++|...+.....
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-----------------~~~~~~~la~~~~~~~~~~~a~~~~~~~~~ 67 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-----------------NVETLLKLGKTYMDIGLPNDAIESLKKFVV 67 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344555555555555555555555555444332 444555555555555555555555555544
Q ss_pred cCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011081 276 LGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTF 355 (494)
Q Consensus 276 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 355 (494)
.. +-+...+..+...+...++++.|...+....+.. +.+...+..+...|.+.|++++|++.|++..+.. +.+..+|
T Consensus 68 ~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~ 144 (184)
T 3vtx_A 68 LD-TTSAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAY 144 (184)
T ss_dssp HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred cC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHH
Confidence 32 2233444444445555555555555555544432 2344455555555555555555555555554443 3344455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 356 EHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 356 ~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
..+...|.+.|++++|.+.|++.++
T Consensus 145 ~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 145 QSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5555555555555555555555544
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.48 E-value=6.9e-12 Score=120.00 Aligned_cols=234 Identities=5% Similarity=-0.074 Sum_probs=179.2
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHc----CCCc-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C----CCCHhHHH
Q 011081 253 LMVGFYREGAFEKVEDVWVEMARL----GCEP-DCYSYSVLMAVFCEERRMREAEKLWEEMRDKN--V----EHDVVAYN 321 (494)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~----~~~~~~~~ 321 (494)
....+...|++++|...|++..+. +-.+ ...++..+...|...|++++|...+++..+.- . .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566778899999999999998764 1111 34678889999999999999999999876531 1 11245788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCChhhHH
Q 011081 322 TIIGGFCEIGEMARAEEFFREMGLS----GVE-SSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK----GF-EPEGSTIE 391 (494)
Q Consensus 322 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~ 391 (494)
.+...|...|++++|.+.|++..+. +.. ....++..+...|...|++++|...|++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8999999999999999999988653 111 11247888999999999999999999998872 22 33466788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 011081 392 VLIGELCDKRRVFEALDILKARVVKFGLFPT---EKSYMFLIKGLCEEGK---MEEALKVQAEMVGKGFEPS-LEIYSAF 464 (494)
Q Consensus 392 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~l 464 (494)
.+...+...|++++|...+++.+....-..+ ...+..+...+...|+ +++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8999999999999999999976653211122 2335667788888998 77788777766 33333 4567788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 465 IDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 465 i~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
...|...|++++|.+.+++..+..-
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 8999999999999999999987543
No 65
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.47 E-value=1.4e-11 Score=120.28 Aligned_cols=344 Identities=10% Similarity=0.024 Sum_probs=149.5
Q ss_pred hhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCCh---hHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCC
Q 011081 80 GLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLI---GPARDVIRVALRSPENDPKLKLFEVLVKTYRECGS 156 (494)
Q Consensus 80 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 156 (494)
...++++.|++.|..+...+ +..++..+-..+...|.. ++|...|+...+.
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---------------------- 67 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---------------------- 67 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----CCTGGGTCC-----------------------------------------------
T ss_pred HhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----------------------
Confidence 34567777888777765432 223344444455555655 7777777766542
Q ss_pred ChhhHHHHHHHHHhcCCh--hcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhH---HHHHHHHHhcCCccccc
Q 011081 157 APFVFDLLIKCCLEVKNI--EKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVIS---GYEIYREVFGLDSDATA 231 (494)
Q Consensus 157 ~~~~~~~li~~~~~~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~ 231 (494)
++..+..+...+...+.. ...++|++.|++..+.|.. ..+..|...|...+..+. +.+.+......
T Consensus 68 ~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~------ 138 (452)
T 3e4b_A 68 SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA------ 138 (452)
T ss_dssp ---CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH------
T ss_pred CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC------
Confidence 223333333323333310 1267777777777776532 255566666665554332 33333333211
Q ss_pred ccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcC---CHHHHHHHHHHH
Q 011081 232 GIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEER---RMREAEKLWEEM 308 (494)
Q Consensus 232 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m 308 (494)
.+...+..+...|...+.++++......+.+.-...+...+..|...|.+.| +.++|.++|+..
T Consensus 139 -------------g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~a 205 (452)
T 3e4b_A 139 -------------GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAG 205 (452)
T ss_dssp -------------TCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 1233444455555555544333333222222111222235555555555555 555555555555
Q ss_pred HhCCCCCCHhHHHHHHHHHHcc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHC
Q 011081 309 RDKNVEHDVVAYNTIIGGFCEI----GEMARAEEFFREMGLSGVESSSVTFEHLVNG-Y--CRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 309 ~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~ 381 (494)
.+.| .++...+..|...|... +++++|++.|++.. .| +...+..|... | ...+++++|+..|++..+.
T Consensus 206 a~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~ 280 (452)
T 3e4b_A 206 VSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA 280 (452)
T ss_dssp HHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT
T ss_pred HHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC
Confidence 5554 33444444455555443 45556666655554 22 22333334333 2 2355556666666655555
Q ss_pred CCCCChhhHHHHHHHHHhcC-----CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhC
Q 011081 382 GFEPEGSTIEVLIGELCDKR-----RVFEALDILKARVVKFGLFPTEKSYMFLIKGLCE----EGKMEEALKVQAEMVGK 452 (494)
Q Consensus 382 ~~~p~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 452 (494)
| +...+..+...|. .| +.++|++.|++.. .-+...+..|...|.. ..+.++|.++|++..+.
T Consensus 281 g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 281 D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 4 3334444444444 33 5555555555332 2234444444444443 22555566666555554
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcc
Q 011081 453 GFEPSLEIYSAFIDGYMK----EGNVEMATMLRKEMFENQ 488 (494)
Q Consensus 453 ~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 488 (494)
|. ......|...|.. ..+.++|..+++...+.|
T Consensus 352 g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 352 GQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred Ch---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 42 1222333333332 235555555555554444
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=3e-12 Score=125.93 Aligned_cols=212 Identities=8% Similarity=-0.001 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCCh-hHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHH
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGV-ISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMV 255 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~ 255 (494)
++++++.++....... .+...+..+...+...|++ ++|.+.|+++++.++. +..+|..+..
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-----------------~~~a~~~lg~ 145 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-----------------LVEAWNQLGE 145 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-----------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-----------------CHHHHHHHHH
Confidence 6777777777665432 3677888888889999999 9999999988776543 6788888999
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011081 256 GFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEE---------RRMREAEKLWEEMRDKNVEHDVVAYNTIIGG 326 (494)
Q Consensus 256 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 326 (494)
.|.+.|++++|+..|++..+. .|+...+..+...|... |++++|.+.|++..+.. +.+...|..+..+
T Consensus 146 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 222 (474)
T 4abn_A 146 VYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNA 222 (474)
T ss_dssp HHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 999999999999999888876 46777888888888888 88888888888887764 4467788888888
Q ss_pred HHcc--------CCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 011081 327 FCEI--------GEMARAEEFFREMGLSGVE---SSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIG 395 (494)
Q Consensus 327 ~~~~--------g~~~~A~~~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 395 (494)
|... |++++|++.|++..+.. + -+...|..+...|...|++++|.+.|++..+.. +-+...+..+..
T Consensus 223 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~ 300 (474)
T 4abn_A 223 YLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQ 300 (474)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 8888 88888888888887753 3 477788888888888888888888888887764 224556677777
Q ss_pred HHHhcCCHHHHHHHHH
Q 011081 396 ELCDKRRVFEALDILK 411 (494)
Q Consensus 396 ~~~~~~~~~~a~~~~~ 411 (494)
.+...|++++|++.+.
T Consensus 301 ~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 301 LLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7777777777766543
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.45 E-value=1.9e-11 Score=103.72 Aligned_cols=169 Identities=12% Similarity=0.043 Sum_probs=149.5
Q ss_pred CCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccc
Q 011081 155 GSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIG 234 (494)
Q Consensus 155 ~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 234 (494)
|.++.+|..+...|.+.|+ +++|++.|++..+.... +..++..+..+|.+.|++++|...+.......+.
T Consensus 2 ge~~~iy~~lG~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~------ 71 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGD---FDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT------ 71 (184)
T ss_dssp --CHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------
T ss_pred CcHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch------
Confidence 4567889999999999999 99999999999987644 7888999999999999999999999999775543
Q ss_pred cccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011081 235 KDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVE 314 (494)
Q Consensus 235 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 314 (494)
+...+..+...+...++++.+...+.+..+.. +-+...+..+...|.+.|++++|++.|++..+.. +
T Consensus 72 -----------~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p 138 (184)
T 3vtx_A 72 -----------SAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-P 138 (184)
T ss_dssp -----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred -----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-c
Confidence 67888888999999999999999999988764 4467889999999999999999999999998874 4
Q ss_pred CCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011081 315 HDVVAYNTIIGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
.+..+|..+..+|.+.|++++|++.|++..+.
T Consensus 139 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 139 GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 57889999999999999999999999999875
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.44 E-value=8.4e-12 Score=122.75 Aligned_cols=214 Identities=9% Similarity=-0.020 Sum_probs=175.5
Q ss_pred hhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCH-hHHHHHHHHHHHcCCCcCHhHHHHHHH
Q 011081 212 VISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAF-EKVEDVWVEMARLGCEPDCYSYSVLMA 290 (494)
Q Consensus 212 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~li~ 290 (494)
++++.+.+++.....+ .+...|..+...|...|++ ++|++.|++..+.. +-+..+|..+..
T Consensus 84 ~~~al~~l~~~~~~~~-----------------~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~ 145 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-----------------VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGE 145 (474)
T ss_dssp HHHHHHHHHHHHTTCC-----------------CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-----------------hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 5566667776655432 3788899999999999999 99999999998874 345788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011081 291 VFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEI---------GEMARAEEFFREMGLSGVESSSVTFEHLVNG 361 (494)
Q Consensus 291 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 361 (494)
.|.+.|++++|.+.|++..+. .|+...+..+...|... |++++|++.|++..+.. +.+...|..+..+
T Consensus 146 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 222 (474)
T 4abn_A 146 VYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNA 222 (474)
T ss_dssp HHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 999999999999999999887 46778899999999999 99999999999998875 5568889999999
Q ss_pred HHhc--------CCHHHHHHHHHHHHHCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011081 362 YCRA--------GDVDSAILVYNDMCRKGFE--PEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIK 431 (494)
Q Consensus 362 ~~~~--------g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 431 (494)
|... |++++|+..|++.++.... -+...|..+...|...|++++|++.|++.+.... -+...+..+..
T Consensus 223 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~a~~~l~~ 300 (474)
T 4abn_A 223 YLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP--AWPEPQQREQQ 300 (474)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHH
Confidence 9888 8899999999999886421 3677888888999999999999999987776542 34567778888
Q ss_pred HHHhcCCHHHHHHHHHH
Q 011081 432 GLCEEGKMEEALKVQAE 448 (494)
Q Consensus 432 ~~~~~g~~~~A~~~~~~ 448 (494)
++...|++++|.+.+.+
T Consensus 301 ~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 301 LLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 88888888888875543
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=6.3e-12 Score=116.14 Aligned_cols=245 Identities=11% Similarity=0.065 Sum_probs=176.3
Q ss_pred ccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-------CCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----
Q 011081 244 RPNVHTFNALMVGFYREGAFEKVEDVWVEMARL-------GCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK----- 311 (494)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----- 311 (494)
+.+..+|..+...+...|++++|..+++++.+. .......++..+...|...|++++|...+++..+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 346788999999999999999999999999873 22334567888999999999999999999998754
Q ss_pred -C-CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 011081 312 -N-VEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS------GV-ESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK- 381 (494)
Q Consensus 312 -g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 381 (494)
+ .+....++..+...|...|++++|.+.|++..+. +. +.....+..+...|...|++++|..+|+++.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2 1234668899999999999999999999998764 21 234566888899999999999999999998774
Q ss_pred -----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCCCC-------HHHHHHHHHHHHhcCCHHHH
Q 011081 382 -----GFEP-EGSTIEVLIGELCDKRRVFEALDILKARVVKF------GLFPT-------EKSYMFLIKGLCEEGKMEEA 442 (494)
Q Consensus 382 -----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~p~-------~~~~~~li~~~~~~g~~~~A 442 (494)
+..| ...++..+...+...|++++|.+.+++.+... ...+. ...+..+...+...+.+.++
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 2223 34577888899999999999999999766431 11111 11222223333445555666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 443 LKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 443 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
...+...... ...+..++..+..+|.+.|++++|.+++++.++..+
T Consensus 264 ~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 264 GGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 6666666543 123467888899999999999999999999987643
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=6e-11 Score=113.47 Aligned_cols=235 Identities=11% Similarity=-0.027 Sum_probs=177.4
Q ss_pred HHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC--C-
Q 011081 202 LIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLG--C- 278 (494)
Q Consensus 202 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~- 278 (494)
....+...|++++|.+.|+++...... .....-...+|..+...|...|++++|+..+.+..+.- .
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 177 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIF-----------VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE 177 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGG-----------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhh-----------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc
Confidence 556778899999999999999764221 00001146789999999999999999999999887641 1
Q ss_pred ---CcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC----
Q 011081 279 ---EPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK----NVE-HDVVAYNTIIGGFCEIGEMARAEEFFREMGLS---- 346 (494)
Q Consensus 279 ---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 346 (494)
.....+++.+...|...|++++|...|++..+. +-. ....++..+..+|...|++++|.+.|++..+.
T Consensus 178 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 178 AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 112357888999999999999999999987653 111 11247889999999999999999999998772
Q ss_pred CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHhCC
Q 011081 347 GV-ESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK----GFEPEGSTIEVLIGELCDKRR---VFEALDILKARVVKFG 418 (494)
Q Consensus 347 ~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~ 418 (494)
+. +....++..+...|.+.|++++|...+++..+. +-......+..+...+...|+ +++|+.++++. +
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~----~ 333 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK----M 333 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT----T
T ss_pred ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC----c
Confidence 22 445677889999999999999999999988763 111122335667777888888 77777777632 3
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 419 LFPT-EKSYMFLIKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 419 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (494)
..|+ ...+..+...|...|++++|.+.+++..+
T Consensus 334 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 334 LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2333 34677888999999999999999998875
No 71
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.40 E-value=2.3e-11 Score=118.90 Aligned_cols=314 Identities=9% Similarity=-0.018 Sum_probs=208.3
Q ss_pred HHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhC
Q 011081 111 IIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSR 190 (494)
Q Consensus 111 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~ 190 (494)
+...+.+.|++++|..+++.+.+.+ ++.++..|...|...|+.+..++|++.|++..+.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---------------------~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~ 67 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---------------------YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT 67 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---------------------CCTGGGTCC-------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---------------------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC
Confidence 4566677899999999999887643 1223333444455566622248999999988754
Q ss_pred CCCcChHhHHHHHHHHHcCC-----ChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHh-
Q 011081 191 GLSVKVSTCNALIWEVSRGK-----GVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFE- 264 (494)
Q Consensus 191 g~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~- 264 (494)
++..+..|...+...+ +.++|.+.|++..+.+. ...+..|...|...+..+
T Consensus 68 ----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~-------------------~~A~~~Lg~~y~~~~~~~~ 124 (452)
T 3e4b_A 68 ----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE-------------------GNTLIPLAMLYLQYPHSFP 124 (452)
T ss_dssp -------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC-------------------SSCHHHHHHHHHHCGGGCT
T ss_pred ----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHhCCCCCC
Confidence 5666777777565555 67899999999976442 236777777777766544
Q ss_pred --HHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHH----HHHHHHHHhCCCCCCHhHHHHHHHHHHccC---CHHH
Q 011081 265 --KVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREA----EKLWEEMRDKNVEHDVVAYNTIIGGFCEIG---EMAR 335 (494)
Q Consensus 265 --~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~ 335 (494)
++.+.+....+.| +...+..|...|...+.++++ ..+++.... .+...+..|...|.+.| +.++
T Consensus 125 ~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~ 197 (452)
T 3e4b_A 125 NVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAE 197 (452)
T ss_dssp TCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHH
Confidence 4555666555555 456777788888888855444 444444433 24448899999999999 9999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-H--HhcCCHHHHHH
Q 011081 336 AEEFFREMGLSGVESSSVTFEHLVNGYCRA----GDVDSAILVYNDMCRKGFEPEGSTIEVLIGE-L--CDKRRVFEALD 408 (494)
Q Consensus 336 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~--~~~~~~~~a~~ 408 (494)
|++.|++..+.| .++...+..+...|... +++++|+..|+... .| +...+..+... + ...++.++|++
T Consensus 198 A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~ 272 (452)
T 3e4b_A 198 LLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMK 272 (452)
T ss_dssp HHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHH
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 999999999988 66777667777777655 79999999999987 44 44555566555 3 46899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 011081 409 ILKARVVKFGLFPTEKSYMFLIKGLCEEG-----KMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMK----EGNVEMATM 479 (494)
Q Consensus 409 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~ 479 (494)
.|++.... | +...+..|...|. .| ++++|.++|++.. .-+...+..|...|.. ..+.++|.+
T Consensus 273 ~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 343 (452)
T 3e4b_A 273 YLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALD 343 (452)
T ss_dssp HHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHH
T ss_pred HHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence 99976643 3 6777777887777 56 9999999999886 3367777777777766 349999999
Q ss_pred HHHHHHHccc
Q 011081 480 LRKEMFENQV 489 (494)
Q Consensus 480 ~~~~m~~~~~ 489 (494)
+|++..+.|.
T Consensus 344 ~~~~Aa~~g~ 353 (452)
T 3e4b_A 344 HLLTAARNGQ 353 (452)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHHHhhCh
Confidence 9999887654
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=2.6e-11 Score=111.93 Aligned_cols=204 Identities=14% Similarity=0.124 Sum_probs=144.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc------CC-CcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARL------GC-EPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK------N 312 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g 312 (494)
...++..+...|...|++++|..++++..+. +- .....++..+...|...|++++|.+.+++..+. +
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 147 (311)
T 3nf1_A 68 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 147 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC
Confidence 5677889999999999999999999998764 21 224567888999999999999999999998764 2
Q ss_pred C-CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 011081 313 V-EHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS------G-VESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK--- 381 (494)
Q Consensus 313 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--- 381 (494)
- +....++..+...|...|++++|.++|+++.+. + .+....++..+...|...|++++|...++++.+.
T Consensus 148 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 148 DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 224567888999999999999999999998764 2 1223467888999999999999999999999863
Q ss_pred ----CCCCChhhHHHH-------HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 382 ----GFEPEGSTIEVL-------IGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMV 450 (494)
Q Consensus 382 ----~~~p~~~~~~~l-------i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (494)
...+........ ...+...+.+.++...+...... ...+..++..+..+|.+.|++++|.++|++..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 228 REFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp HHHC------CCHHHHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 122222222222 23333444555555555533322 12345678889999999999999999999887
Q ss_pred h
Q 011081 451 G 451 (494)
Q Consensus 451 ~ 451 (494)
+
T Consensus 306 ~ 306 (311)
T 3nf1_A 306 R 306 (311)
T ss_dssp H
T ss_pred H
Confidence 5
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.37 E-value=8.1e-11 Score=99.43 Aligned_cols=164 Identities=10% Similarity=0.081 Sum_probs=99.7
Q ss_pred HhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 011081 197 STCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARL 276 (494)
Q Consensus 197 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 276 (494)
..+..+...+...|++++|.+.|+++....+. +..++..+...+...|++++|...++++.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 71 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-----------------DVDVALHLGIAYVKTGAVDRGTELLERSLAD 71 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-----------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 33445555666666666666666666544322 4556666666666666666666666666654
Q ss_pred CCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011081 277 GCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFE 356 (494)
Q Consensus 277 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 356 (494)
. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.|+++.+.. +.+...+.
T Consensus 72 ~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 148 (186)
T 3as5_A 72 A-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHR 148 (186)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHH
Confidence 3 3345556666666666666666666666665543 3355566666666666666666666666665543 34455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 357 HLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 357 ~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
.+...+...|++++|...++.+.+
T Consensus 149 ~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 149 AIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666666554
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.37 E-value=8.1e-10 Score=105.06 Aligned_cols=273 Identities=9% Similarity=0.030 Sum_probs=194.1
Q ss_pred HHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChH----hHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccc
Q 011081 164 LIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVS----TCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKR 239 (494)
Q Consensus 164 li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 239 (494)
....+...|+ +++|...+++........+.. +++.+...+...|++++|.+.+++.....+.
T Consensus 20 ~a~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----------- 85 (373)
T 1hz4_A 20 RAQVAINDGN---PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ----------- 85 (373)
T ss_dssp HHHHHHHTTC---HHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHCCC---HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh-----------
Confidence 3445667888 999999999988754332322 4666777888899999999999998653221
Q ss_pred ccc-cccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCC--c-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 240 VVR-VRPNVHTFNALMVGFYREGAFEKVEDVWVEMARL----GCE--P-DCYSYSVLMAVFCEERRMREAEKLWEEMRDK 311 (494)
Q Consensus 240 ~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 311 (494)
.+ ......+++.+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....
T Consensus 86 -~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 164 (373)
T 1hz4_A 86 -HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV 164 (373)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -cCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 00 0112345677888899999999999999988654 211 2 2345677888899999999999999988754
Q ss_pred CCC----CCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHC
Q 011081 312 NVE----HDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESS-SVTFE-----HLVNGYCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 312 g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~ 381 (494)
... ....+|..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++....
T Consensus 165 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 165 LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp TTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred hhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 211 1235678888999999999999999998865311111 11222 2334477999999999999988764
Q ss_pred CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 382 GFEPE---GSTIEVLIGELCDKRRVFEALDILKARVVK---FGLFPTE-KSYMFLIKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 382 ~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (494)
...+. ...+..+...+...|++++|...++..+.. .+..++. ..+..+..++...|+.++|...+.+...
T Consensus 245 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 245 EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 32211 224567778899999999999999865442 2222222 2566677888899999999999998865
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.35 E-value=5.9e-10 Score=106.31 Aligned_cols=234 Identities=9% Similarity=0.063 Sum_probs=177.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCC-Cc----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CC-CCHh
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARLGC-EP----DCYSYSVLMAVFCEERRMREAEKLWEEMRDK----N-VE-HDVV 318 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~-~~~~ 318 (494)
|......+...|++++|+..|++..+... .+ ...++..+...|...|+++.|...+++..+. + .. ....
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 33445567789999999999999876421 12 2457888999999999999999999987642 1 11 1255
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChh
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLS----GVE-SSSVTFEHLVNGYCRAGDVDSAILVYNDMCR-----KGFEPEGS 388 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~ 388 (494)
+++.+..+|...|++++|.+.|++..+. +.. ....++..+...|...|++++|...|++..+ .. +....
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHH
Confidence 7888999999999999999999987653 211 1235678899999999999999999999887 43 23367
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHH
Q 011081 389 TIEVLIGELCDKRRVFEALDILKARVVKFGLFP---TEKSYMFLIKGLCEEGK---MEEALKVQAEMVGKGFEPS-LEIY 461 (494)
Q Consensus 389 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~ 461 (494)
++..+...+.+.|++++|...+++.+....-.. ....+..+...+...|+ +++|..++++. +..|+ ...+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 339 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHH
Confidence 788889999999999999999998776543222 23355666666777888 77888777763 33333 4566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011081 462 SAFIDGYMKEGNVEMATMLRKEMFEN 487 (494)
Q Consensus 462 ~~li~~~~~~g~~~~a~~~~~~m~~~ 487 (494)
..+...|...|++++|.+.+++..+.
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77888999999999999999998764
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=1.9e-10 Score=97.07 Aligned_cols=166 Identities=16% Similarity=0.032 Sum_probs=93.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELC 398 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 398 (494)
.|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444455555555555555555554432 2344455555555555555555555555555442 223445555555555
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011081 399 DKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMAT 478 (494)
Q Consensus 399 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 478 (494)
..|++++|.+.+++.+... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 5666666666655444432 2344556666666666777777777777666542 334566666777777777777777
Q ss_pred HHHHHHHHccc
Q 011081 479 MLRKEMFENQV 489 (494)
Q Consensus 479 ~~~~~m~~~~~ 489 (494)
+.+++..+..+
T Consensus 165 ~~~~~~~~~~~ 175 (186)
T 3as5_A 165 PHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHcCC
Confidence 77777666544
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.33 E-value=6.6e-11 Score=121.26 Aligned_cols=165 Identities=12% Similarity=0.057 Sum_probs=117.5
Q ss_pred hHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 011081 196 VSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMAR 275 (494)
Q Consensus 196 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (494)
..+|+.|..+|.+.|++++|.+.|+++++.++. +..+|+.+...|.+.|++++|++.|++..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-----------------~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~ 71 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-----------------FAAAHSNLASVLQQQGKLQEALMHYKEAIR 71 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456777777777777777777777777665443 567777777777777777777777777766
Q ss_pred cCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011081 276 LGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTF 355 (494)
Q Consensus 276 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 355 (494)
.. +-+..+|..+..+|.+.|++++|++.|++..+.. +-+..+|+.+..+|.+.|++++|++.|++..+.. +-+...|
T Consensus 72 l~-P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~ 148 (723)
T 4gyw_A 72 IS-PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAY 148 (723)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 53 2345677777777777777777777777776653 3356677777777777777777777777777654 4456677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 356 EHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 356 ~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
..+...|...|++++|.+.++++++
T Consensus 149 ~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 149 CNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred hhhhhHHHhcccHHHHHHHHHHHHH
Confidence 7777777777777777777766654
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.32 E-value=5.6e-10 Score=106.19 Aligned_cols=275 Identities=10% Similarity=-0.062 Sum_probs=194.0
Q ss_pred HHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-C
Q 011081 201 ALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGC-E 279 (494)
Q Consensus 201 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~ 279 (494)
.....+...|++++|...+++.....+. .....-..+++.+...+...|++++|...+++..+..- .
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 86 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPP------------GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH 86 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCT------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCC------------CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc
Confidence 3445567789999999999998765432 00000123577778889999999999999998765311 1
Q ss_pred cC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 011081 280 PD----CYSYSVLMAVFCEERRMREAEKLWEEMRDK----NVE--H-DVVAYNTIIGGFCEIGEMARAEEFFREMGLSGV 348 (494)
Q Consensus 280 p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 348 (494)
.+ ..++..+...+...|++++|...+++..+. +.. | ....+..+...|...|++++|...+++......
T Consensus 87 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 87 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 12 233567788899999999999999987653 222 2 245677788899999999999999999875421
Q ss_pred C----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 011081 349 E----SSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEG-STIE-----VLIGELCDKRRVFEALDILKARVVKFG 418 (494)
Q Consensus 349 ~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~-----~li~~~~~~~~~~~a~~~~~~~~~~~~ 418 (494)
. ....++..+...+...|++++|...+++.....-.++. ..+. ..+..+...|+.++|...+++......
T Consensus 167 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 246 (373)
T 1hz4_A 167 SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF 246 (373)
T ss_dssp TSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCC
T ss_pred ccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCC
Confidence 1 12456778888999999999999999998753212111 1121 233447789999999999885443211
Q ss_pred CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011081 419 LF--PTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK----GFEPSL-EIYSAFIDGYMKEGNVEMATMLRKEMFEN 487 (494)
Q Consensus 419 ~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 487 (494)
.. .....+..+...+...|++++|...+++..+. |..++. ..+..+..++...|+.++|...+++..+.
T Consensus 247 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 247 ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 10 11335677888899999999999999988653 222222 36666777889999999999999988764
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.32 E-value=1.5e-09 Score=103.53 Aligned_cols=235 Identities=11% Similarity=-0.000 Sum_probs=175.9
Q ss_pred HHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC---
Q 011081 201 ALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLG--- 277 (494)
Q Consensus 201 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--- 277 (494)
.....+...|++++|...|+++...... ..+......++..+...|...|++++|...+.+..+..
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 174 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPF-----------VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGG-----------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhh-----------CCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence 3445667899999999999999765321 00012246778899999999999999999999887531
Q ss_pred --CCc-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHhHHHHHHHHHHccCCHHHHHHHHHHHHh----
Q 011081 278 --CEP-DCYSYSVLMAVFCEERRMREAEKLWEEMRDK----NVE-HDVVAYNTIIGGFCEIGEMARAEEFFREMGL---- 345 (494)
Q Consensus 278 --~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---- 345 (494)
..+ ...+++.+...|...|++++|.+.|++..+. +-. ....+++.+..+|...|++++|.+.|++..+
T Consensus 175 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 175 PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 111 2457888999999999999999999987653 211 1245788899999999999999999999877
Q ss_pred -CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHhC
Q 011081 346 -SGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGF----EPEGSTIEVLIGELCDKRR---VFEALDILKARVVKF 417 (494)
Q Consensus 346 -~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~ 417 (494)
.. +....++..+...|.+.|++++|...+++..+... +.....+..+...+...++ +.+|+..+++ .
T Consensus 255 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~----~ 329 (378)
T 3q15_A 255 KVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK----K 329 (378)
T ss_dssp HCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH----T
T ss_pred hCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh----C
Confidence 43 33467888999999999999999999999887421 1223345555566667777 7778777763 2
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 418 GLFPT-EKSYMFLIKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 418 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (494)
+..++ ...+..+...|...|++++|.+.|++..+
T Consensus 330 ~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 330 NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22232 34567788999999999999999998864
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.27 E-value=1.5e-10 Score=118.52 Aligned_cols=167 Identities=10% Similarity=0.053 Sum_probs=149.1
Q ss_pred CChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccc
Q 011081 156 SAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGK 235 (494)
Q Consensus 156 ~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 235 (494)
.++.+++.|...+.+.|+ +++|++.|++.++.... +..+|+.+..+|.+.|++++|.+.|+++++.++.
T Consensus 7 ~~a~al~nLG~~~~~~G~---~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~------- 75 (723)
T 4gyw_A 7 THADSLNNLANIKREQGN---IEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT------- 75 (723)
T ss_dssp HHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------
T ss_pred CcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------
Confidence 346788999999999999 99999999999986543 6788999999999999999999999999887654
Q ss_pred ccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011081 236 DVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEH 315 (494)
Q Consensus 236 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 315 (494)
+..+|+.+...|.+.|++++|++.|++..+.. +-+..+|+.+..+|.+.|++++|++.|++..+.. +-
T Consensus 76 ----------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~ 143 (723)
T 4gyw_A 76 ----------FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PD 143 (723)
T ss_dssp ----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SC
T ss_pred ----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 78999999999999999999999999998874 4467899999999999999999999999998874 44
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011081 316 DVVAYNTIIGGFCEIGEMARAEEFFREMGL 345 (494)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (494)
+...|..+..+|...|++++|.+.+++..+
T Consensus 144 ~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 144 FPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp CHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred ChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 688999999999999999999999888754
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.25 E-value=1.3e-10 Score=105.47 Aligned_cols=227 Identities=10% Similarity=0.067 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccccc--ccccCHHHHHHHH
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVV--RVRPNVHTFNALM 254 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~li 254 (494)
+++|++++.............++..+...|...|++++|.+.|+++..... +.. .......+|..+.
T Consensus 24 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----------~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 24 CKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIRE-----------KTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------HHTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH-----------HHcCCcchHHHHHHHHHH
Confidence 556666666665433334567788999999999999999999999865310 000 0123577899999
Q ss_pred HHHHhcCCHhHHHHHHHHHHHc------C-CCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-CCCCHhHH
Q 011081 255 VGFYREGAFEKVEDVWVEMARL------G-CEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK------N-VEHDVVAY 320 (494)
Q Consensus 255 ~~~~~~g~~~~a~~~~~~m~~~------g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g-~~~~~~~~ 320 (494)
..|...|++++|...+++..+. . -+....++..+...|...|++++|..++++..+. + .+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999998765 1 1234567888999999999999999999998764 1 12245678
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHH------HHHHHHHHHHCCCCCC
Q 011081 321 NTIIGGFCEIGEMARAEEFFREMGLS-------GVES-SSVTFEHLVNGYCRAGDVDS------AILVYNDMCRKGFEPE 386 (494)
Q Consensus 321 ~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~-~~~~~~~li~~~~~~g~~~~------a~~~~~~m~~~~~~p~ 386 (494)
..+...|.+.|++++|..+|++..+. ...+ ....|..+...+...+.... +...++.... .....
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHH
Confidence 89999999999999999999998753 1122 22333334333333333222 2222222211 11223
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 387 GSTIEVLIGELCDKRRVFEALDILKARVV 415 (494)
Q Consensus 387 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 415 (494)
..++..+...|...|++++|...+++.+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55778889999999999999999986654
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.24 E-value=1.5e-10 Score=105.12 Aligned_cols=229 Identities=11% Similarity=0.026 Sum_probs=158.5
Q ss_pred HhcCCHhHHHHHHHHHHHc-------CCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHhHHHHH
Q 011081 258 YREGAFEKVEDVWVEMARL-------GCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK------NV-EHDVVAYNTI 323 (494)
Q Consensus 258 ~~~g~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~-~~~~~~~~~l 323 (494)
...|++++|+.++++..+. ..+....++..+...|...|++++|...+++..+. +- +....+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3467777887777776652 21234567889999999999999999999998754 21 2346688999
Q ss_pred HHHHHccCCHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-Chhh
Q 011081 324 IGGFCEIGEMARAEEFFREMGLS------G-VESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK------GFEP-EGST 389 (494)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~ 389 (494)
...|...|++++|.+.|++.... . .+....++..+...|...|++++|...++++.+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1 1334677888999999999999999999998875 1123 3567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCC
Q 011081 390 IEVLIGELCDKRRVFEALDILKARVVKF------GLFPT-EKSYMFLIKGLCEEGK------MEEALKVQAEMVGKGFEP 456 (494)
Q Consensus 390 ~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~p~-~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~~~~p 456 (494)
+..+...+...|++++|.+.+++.+... ...+. ...|..+...+...+. +..+...+..... ....
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 8888999999999999999999766531 11111 2233333333333222 3333333332211 1112
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011081 457 SLEIYSAFIDGYMKEGNVEMATMLRKEMFEN 487 (494)
Q Consensus 457 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 487 (494)
...++..+...|...|++++|.+++++.++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567888899999999999999999988764
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.23 E-value=1.2e-09 Score=95.92 Aligned_cols=198 Identities=10% Similarity=-0.065 Sum_probs=152.1
Q ss_pred cCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011081 280 PDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLV 359 (494)
Q Consensus 280 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 359 (494)
.|...+......+.+.|++++|...|+...+....++...+..+..+|.+.|++++|++.|++..+.. +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45678888899999999999999999999887533677888889999999999999999999998875 45677889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC---HHHHHHH
Q 011081 360 NGYCRAGDVDSAILVYNDMCRKGFEPEG-------STIEVLIGELCDKRRVFEALDILKARVVKFGLFPT---EKSYMFL 429 (494)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 429 (494)
..|...|++++|...|++.++... .+. ..|..+...+...|++++|++.|++.+.. .|+ ...|..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHH
Confidence 999999999999999999988642 233 45777778888999999999999865543 454 4566667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 430 IKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
..+|...| ..+++++...+ ..+...|..... ...|.+++|...+++..+..+.
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCCC
Confidence 77765544 44455555443 334555544443 3456789999999999987654
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.22 E-value=1.6e-09 Score=95.23 Aligned_cols=196 Identities=9% Similarity=-0.002 Sum_probs=152.5
Q ss_pred ChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccc
Q 011081 157 APFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKD 236 (494)
Q Consensus 157 ~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 236 (494)
++..+......+...|+ +++|++.|+...+....++...+..+..++...|++++|.+.|++....++.
T Consensus 6 ~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------- 74 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKN---YAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-------- 74 (228)
T ss_dssp CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS--------
T ss_pred CHHHHHHHHHHHHHccC---HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc--------
Confidence 45677777888899999 9999999999998775467777777999999999999999999999876553
Q ss_pred cccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH-------hHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 237 VKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDC-------YSYSVLMAVFCEERRMREAEKLWEEMR 309 (494)
Q Consensus 237 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~ 309 (494)
+...|..+...|.+.|++++|+..+++..+.. +.+. ..|..+...+.+.|++++|.+.|++..
T Consensus 75 ---------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 144 (228)
T 4i17_A 75 ---------LANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT 144 (228)
T ss_dssp ---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ---------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH
Confidence 67889999999999999999999999998763 2234 457788888999999999999999998
Q ss_pred hCCCCC--CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011081 310 DKNVEH--DVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 310 ~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 382 (494)
+.. +. +...|..+..+|...| ..+++++...+ ..+...|.... ....+.+++|+..|++..+..
T Consensus 145 ~~~-p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 145 DVT-SKKWKTDALYSLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp TSS-CHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred hcC-CCcccHHHHHHHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 873 22 3567778888876544 34455555543 33444454443 334566899999999998864
No 85
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.20 E-value=1.4e-07 Score=95.62 Aligned_cols=240 Identities=9% Similarity=-0.053 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHHhcC-------CHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHh
Q 011081 247 VHTFNALMVGFYREG-------AFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAE-KLWEEMRDKNVEHDVV 318 (494)
Q Consensus 247 ~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~g~~~~~~ 318 (494)
...|...+.---..+ ..+.+..+|++.+..- +-+...|...+..+.+.|+.++|. ++|+..... ++.+..
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~ 379 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAV 379 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHH
Confidence 355666665433322 1234567888887763 447788888888888999999996 999999875 355677
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCC---------CCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLSG---------VES------------SSVTFEHLVNGYCRAGDVDSAILVYND 377 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~ 377 (494)
.|-.++....+.|++++|.++|+++.... -.| ....|...+....+.|..+.|..+|..
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 78889999999999999999999987631 013 234688888888889999999999999
Q ss_pred HHHC-CCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011081 378 MCRK-GFEPEGSTIEVLIGELCDK-RRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFE 455 (494)
Q Consensus 378 m~~~-~~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 455 (494)
.++. + ......|...+..-.+. ++.+.|.++|+..++..+ -+...|...+......|+.+.|..+|++.+.....
T Consensus 460 A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 460 CRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 9886 2 12233443333333333 458999999998888753 35566778888888899999999999999876322
Q ss_pred C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccccc
Q 011081 456 P--SLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVRQ 491 (494)
Q Consensus 456 p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 491 (494)
+ ....|...+..-.+.|+.+.+.++.+++.+..++.
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 2 35788999998899999999999999999987654
No 86
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.19 E-value=8.5e-08 Score=97.18 Aligned_cols=362 Identities=7% Similarity=-0.015 Sum_probs=220.3
Q ss_pred hhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHH
Q 011081 87 LALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIK 166 (494)
Q Consensus 87 ~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~ 166 (494)
....-|....... +.|..+|..++..+.+.+.++.++.+|+.++..- .....+|..-+.
T Consensus 50 d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~----------------- 108 (679)
T 4e6h_A 50 DVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLS----------------- 108 (679)
T ss_dssp CHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHH-----------------
Confidence 3343444444344 4689999999999999999999999999998732 222333333332
Q ss_pred HHHhcCChhcHHHHHHHHHHHHhCC-CCcChHhHHHHHHHHHcCCCh--------hHHHHHHHHHhcCCccccccccccc
Q 011081 167 CCLEVKNIEKIETCVDIVRMLMSRG-LSVKVSTCNALIWEVSRGKGV--------ISGYEIYREVFGLDSDATAGIGKDV 237 (494)
Q Consensus 167 ~~~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~~~~~~~~~~~~~~ 237 (494)
.-.+.++....+.+.++|++.+... ..|++..|...+.-..+.++. +...++|+.++..
T Consensus 109 ~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~------------ 176 (679)
T 4e6h_A 109 LEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK------------ 176 (679)
T ss_dssp HHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH------------
T ss_pred HHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH------------
Confidence 2222221112888999999998754 237888888887765554443 3344677766431
Q ss_pred cccccc-cc-CHHHHHHHHHHHH---------hcCCHhHHHHHHHHHHHcCCCcCHhHH---------------------
Q 011081 238 KRVVRV-RP-NVHTFNALMVGFY---------REGAFEKVEDVWVEMARLGCEPDCYSY--------------------- 285 (494)
Q Consensus 238 ~~~~~~-~p-~~~~~~~li~~~~---------~~g~~~~a~~~~~~m~~~g~~p~~~~~--------------------- 285 (494)
.|. .+ +...|...+.... ..++.+.+..+|.+.+......-..+|
T Consensus 177 ---vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e 253 (679)
T 4e6h_A 177 ---CAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGE 253 (679)
T ss_dssp ---TTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred ---hCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 122 22 3455665554332 223345566666665532111111122
Q ss_pred ----------------------------------------------------HHHHHHHHhcC-------CHHHHHHHHH
Q 011081 286 ----------------------------------------------------SVLMAVFCEER-------RMREAEKLWE 306 (494)
Q Consensus 286 ----------------------------------------------------~~li~~~~~~g-------~~~~a~~~~~ 306 (494)
...+..--..+ ..+.+..+|+
T Consensus 254 ~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye 333 (679)
T 4e6h_A 254 LSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYM 333 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHH
Confidence 11111110000 0112233444
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHccCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--
Q 011081 307 EMRDKNVEHDVVAYNTIIGGFCEIGEMARAE-EFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGF-- 383 (494)
Q Consensus 307 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-- 383 (494)
+.+.. ++-+...|-..+.-+.+.|+.++|. ++|++.... ++.+...|...+....+.|++++|.++|+.+++...
T Consensus 334 ~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~ 411 (679)
T 4e6h_A 334 QAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLD 411 (679)
T ss_dssp HHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 44333 1234555666666666778888886 888888764 355666777888888889999999999998876310
Q ss_pred -------CCC------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhc-CCHHHH
Q 011081 384 -------EPE------------GSTIEVLIGELCDKRRVFEALDILKARVVK-FGLFPTEKSYMFLIKGLCEE-GKMEEA 442 (494)
Q Consensus 384 -------~p~------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~p~~~~~~~li~~~~~~-g~~~~A 442 (494)
.|+ ..+|...+....+.|..+.|..+|...+.. ... ....|...+..-.+. ++.+.|
T Consensus 412 ~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~--~~~lyi~~A~lE~~~~~d~e~A 489 (679)
T 4e6h_A 412 LAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV--TPDIYLENAYIEYHISKDTKTA 489 (679)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS--CTHHHHHHHHHHHTTTSCCHHH
T ss_pred hhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHhCCCHHHH
Confidence 131 235777777777888899999999877654 222 223343333333343 458999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 443 LKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 443 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
.++|+..++. ++-+...|...++.....|+.+.|+.+|++.+...+
T Consensus 490 r~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 490 CKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 9999999876 455677778888888888999999999999887655
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.16 E-value=3.2e-09 Score=84.13 Aligned_cols=130 Identities=16% Similarity=0.306 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 011081 249 TFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFC 328 (494)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 328 (494)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 46677777888888888888888877654 3356677777777888888888888888777654 345667777777788
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011081 329 EIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 329 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 381 (494)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8888888888888777654 445667777777777778888887777777654
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.13 E-value=1.8e-09 Score=98.88 Aligned_cols=163 Identities=11% Similarity=-0.032 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCcC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHh
Q 011081 249 TFNALMVGFYREGAFEKVEDVWVEMARL----GCEPD-CYSYSVLMAVFCEERRMREAEKLWEEMRDK----NVEH-DVV 318 (494)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~ 318 (494)
.|+.....|...|++++|...|.+..+. |-.++ ..+|+.+...|.+.|++++|+..|++..+. |-.. -..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444555555555555555555544332 11111 234555555555555555555555554332 1000 023
Q ss_pred HHHHHHHHHHcc-CCHHHHHHHHHHHHhCCC---CC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh----
Q 011081 319 AYNTIIGGFCEI-GEMARAEEFFREMGLSGV---ES-S-SVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGS---- 388 (494)
Q Consensus 319 ~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~---~~-~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---- 388 (494)
+|+.+...|... |++++|+..|++..+... .+ . ..++..+...|.+.|++++|+..|++..+........
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 444555555553 555555555555443210 00 0 2234444555555555555555555554432211110
Q ss_pred --hHHHHHHHHHhcCCHHHHHHHHH
Q 011081 389 --TIEVLIGELCDKRRVFEALDILK 411 (494)
Q Consensus 389 --~~~~li~~~~~~~~~~~a~~~~~ 411 (494)
.+..+..++...|++++|...|+
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~ 223 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQ 223 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 23334444444555555555544
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.09 E-value=4.9e-09 Score=96.00 Aligned_cols=210 Identities=12% Similarity=0.007 Sum_probs=153.8
Q ss_pred CHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HhHHHHHHHHHHccCCHHHH
Q 011081 262 AFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK----NVEHD-VVAYNTIIGGFCEIGEMARA 336 (494)
Q Consensus 262 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~A 336 (494)
++++|...|++. ...|...|++++|...|++..+. |-.++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488898888876 34577889999999999887543 32222 56899999999999999999
Q ss_pred HHHHHHHHhC----CCCC-CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----hhhHHHHHHHHHhcCCHHH
Q 011081 337 EEFFREMGLS----GVES-SSVTFEHLVNGYCRA-GDVDSAILVYNDMCRKGFEP-E----GSTIEVLIGELCDKRRVFE 405 (494)
Q Consensus 337 ~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p-~----~~~~~~li~~~~~~~~~~~ 405 (494)
+..|++..+. |-.. -..+++.+...|... |++++|+..|++.++..... + ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999987653 2111 145788899999996 99999999999887642110 1 3568888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH--hcC
Q 011081 406 ALDILKARVVKFGLFPTE-----KSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSL------EIYSAFIDGYM--KEG 472 (494)
Q Consensus 406 a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~--~~g 472 (494)
|+..|++.+....-.+.. ..|..+..++...|++++|...|++..+ +.|+. ..+..++.++. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 999999777644322221 2567788889999999999999999885 34442 23455666664 457
Q ss_pred CHHHHHHHHHHHHHcc
Q 011081 473 NVEMATMLRKEMFENQ 488 (494)
Q Consensus 473 ~~~~a~~~~~~m~~~~ 488 (494)
++++|++.|+++...+
T Consensus 255 ~~~~A~~~~~~~~~l~ 270 (292)
T 1qqe_A 255 QLSEHCKEFDNFMRLD 270 (292)
T ss_dssp THHHHHHHHTTSSCCC
T ss_pred HHHHHHHHhccCCccH
Confidence 7899998887765543
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.08 E-value=6e-09 Score=82.51 Aligned_cols=130 Identities=12% Similarity=0.229 Sum_probs=112.2
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 011081 198 TCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLG 277 (494)
Q Consensus 198 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 277 (494)
.|..+...+...|++++|.++|+++....+ .+...|..+...+...|++++|..+++++.+.+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 65 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-----------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-----------------cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 466778888889999999999999876443 267888999999999999999999999998875
Q ss_pred CCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011081 278 CEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 278 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
+.+...+..+...+...|++++|.++++++.+.. +.+..++..+...|.+.|++++|...|+++...
T Consensus 66 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 66 -PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred -CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 4467788889999999999999999999998764 446788999999999999999999999998764
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.06 E-value=8.3e-08 Score=86.56 Aligned_cols=201 Identities=11% Similarity=0.050 Sum_probs=142.1
Q ss_pred ccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHhHHHH
Q 011081 244 RPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNV-EHDVVAYNT 322 (494)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~ 322 (494)
.|....+..+...+ ..+ |+..|++..+.+ .++..++..+..++...|++++|++++.+.+..|. .-+...+..
T Consensus 68 ~~~~~a~~~la~~~-~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l 141 (310)
T 3mv2_B 68 SKLGKVLDLYVQFL-DTK----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLL 141 (310)
T ss_dssp STTHHHHHHHHHHH-TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHH
T ss_pred CHHHHHHHHHHHHh-ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHH
Confidence 34544444444333 322 778888887765 55666677888899999999999999999877653 236778888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHHCCCCCChhhHHHH
Q 011081 323 IIGGFCEIGEMARAEEFFREMGLSGVES-----SSVTFEHLVNGY--CRAG--DVDSAILVYNDMCRKGFEPEGSTIEVL 393 (494)
Q Consensus 323 li~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~~~~~li~~~--~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~l 393 (494)
++..|.+.|+.+.|.+.+++|.+. .| +..+...+..++ ...| +..+|..+|+++.+. .|+..+...+
T Consensus 142 ~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lL 217 (310)
T 3mv2_B 142 AIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGL 217 (310)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHH
Confidence 999999999999999999999775 56 355666666663 3334 899999999998765 3553344455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhC----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011081 394 IGELCDKRRVFEALDILKARVVKF----G----LFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSL 458 (494)
Q Consensus 394 i~~~~~~~~~~~a~~~~~~~~~~~----~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 458 (494)
+.++.+.|++++|.+.++...... . -+-+..+...+|......|+ +|.+++.++.+. .|+.
T Consensus 218 ln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~h 286 (310)
T 3mv2_B 218 LNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEH 286 (310)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCC
Confidence 558889999999999998433321 0 12355666566666666777 889999999865 5553
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.02 E-value=1.9e-08 Score=90.27 Aligned_cols=189 Identities=8% Similarity=0.035 Sum_probs=115.7
Q ss_pred ccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHh
Q 011081 244 RPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPD---CYSYSVLMAVFCEERRMREAEKLWEEMRDKNV--EHDVV 318 (494)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~ 318 (494)
..+...+-.+...+.+.|++++|+..|+++.+.. +-+ ...+..+..+|.+.|++++|...|+...+... +....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456677777778888888888888888887753 222 45677777788888888888888888876521 11244
Q ss_pred HHHHHHHHHHc--------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 011081 319 AYNTIIGGFCE--------IGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTI 390 (494)
Q Consensus 319 ~~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 390 (494)
++..+..+|.+ .|++++|+..|+++.+.. +.+......+.. +..+... ....+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~~----~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHHH----HHHHH
Confidence 56667777777 788888888888777653 212222211110 0000000 00113
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhC
Q 011081 391 EVLIGELCDKRRVFEALDILKARVVKFGLFP-TEKSYMFLIKGLCEE----------GKMEEALKVQAEMVGK 452 (494)
Q Consensus 391 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 452 (494)
..+...|...|++++|+..|++.+....-.+ ....+..+..+|... |++++|...|+++++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 4455666777777777777776665543222 234555666666655 7777888888777754
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.01 E-value=4.1e-08 Score=88.13 Aligned_cols=188 Identities=9% Similarity=-0.015 Sum_probs=134.8
Q ss_pred cCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CCCHHH
Q 011081 280 PDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD---VVAYNTIIGGFCEIGEMARAEEFFREMGLSGV--ESSSVT 354 (494)
Q Consensus 280 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~ 354 (494)
.+...+..+...+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|+..|++..+... +.....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 355667777888888999999999999988763 223 56788888889999999999999998887521 123456
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHH
Q 011081 355 FEHLVNGYCR--------AGDVDSAILVYNDMCRKGFEPEG-STIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKS 425 (494)
Q Consensus 355 ~~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 425 (494)
+..+..++.. .|++++|...|+++++.. |+. .....+... ..... .. ...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~-------~~~~~----~~--------~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKI-------RELRA----KL--------ARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHH-------HHHHH----HH--------HHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHH-------HHHHH----HH--------HHH
Confidence 7777778888 888999999999888753 332 222111110 00000 01 112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHccccc
Q 011081 426 YMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS----LEIYSAFIDGYMKE----------GNVEMATMLRKEMFENQVRQ 491 (494)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~~~~p 491 (494)
+..+...|.+.|++++|...|+++++. .|+ ...+..+..+|... |++++|...++++++..+..
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 456778899999999999999999875 343 45777788888866 89999999999999876543
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.01 E-value=2.2e-08 Score=86.59 Aligned_cols=164 Identities=8% Similarity=0.061 Sum_probs=97.8
Q ss_pred HHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHH----------------HHHHHHhcCCHhH
Q 011081 202 LIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNA----------------LMVGFYREGAFEK 265 (494)
Q Consensus 202 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~----------------li~~~~~~g~~~~ 265 (494)
....+...|++++|...|++....+|. +...|.. +...|.+.|++++
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~-----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 72 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNID-----------------RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDK 72 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHH-----------------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-----------------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHH
Confidence 344455666777777777666554432 2333333 6777777777777
Q ss_pred HHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC--HHHHHHHHHHH
Q 011081 266 VEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGE--MARAEEFFREM 343 (494)
Q Consensus 266 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m 343 (494)
|+..|++..+.. +-+...+..+...+...|++++|...|++..+.. +.+..+|..+...|...|+ .+.+...++..
T Consensus 73 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~ 150 (208)
T 3urz_A 73 AYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKL 150 (208)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 777777777664 3356677777777777777777777777777653 3456677777777655543 33444455444
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 011081 344 GLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGS 388 (494)
Q Consensus 344 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 388 (494)
.. ..|....+..+..++...|++++|...|++.++. .|+..
T Consensus 151 ~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~ 191 (208)
T 3urz_A 151 SS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTE 191 (208)
T ss_dssp -C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHH
T ss_pred hC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHH
Confidence 31 1222223334445555667777777777777654 35543
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.98 E-value=2.2e-07 Score=83.77 Aligned_cols=220 Identities=10% Similarity=0.055 Sum_probs=158.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 011081 249 TFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFC 328 (494)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 328 (494)
.---+.++|...|++.... .-.|....+..+.. |...+ |...+++....+ .++..++..+..++.
T Consensus 47 ~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~-~~~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~ 111 (310)
T 3mv2_B 47 LLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQ-FLDTK----NIEELENLLKDK-QNSPYELYLLATAQA 111 (310)
T ss_dssp HHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHH-HHTTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHH-Hhccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 3344568888888877421 12344334443333 33322 778888887765 556667778899999
Q ss_pred ccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----ChhhHHHHHHHHH--h-
Q 011081 329 EIGEMARAEEFFREMGLSGV-ESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEP-----EGSTIEVLIGELC--D- 399 (494)
Q Consensus 329 ~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-----~~~~~~~li~~~~--~- 399 (494)
..|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.+++|.+. .| +..+...+..++. .
T Consensus 112 ~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~ 189 (310)
T 3mv2_B 112 ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFAT 189 (310)
T ss_dssp HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHh
Confidence 99999999999999877653 246778888999999999999999999999875 45 3566666665533 2
Q ss_pred -cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC----CCCHHHHHHHHHHHH
Q 011081 400 -KRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK-----GF----EPSLEIYSAFIDGYM 469 (494)
Q Consensus 400 -~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~----~p~~~~~~~li~~~~ 469 (494)
.++..+|..+|++.... .|+..+-..++.++.+.|++++|.+.++.+.+. .. +-+..+...+|....
T Consensus 190 g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~ 266 (310)
T 3mv2_B 190 NKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLAL 266 (310)
T ss_dssp TCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHH
Confidence 34899999999975443 355344445555899999999999999977642 11 335677767777777
Q ss_pred hcCCHHHHHHHHHHHHHcccc
Q 011081 470 KEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 470 ~~g~~~~a~~~~~~m~~~~~~ 490 (494)
..|+ +|.++++++.+..+.
T Consensus 267 ~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 267 MQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HTTC--TTHHHHHHHHHTTCC
T ss_pred HhCh--HHHHHHHHHHHhCCC
Confidence 7787 899999999987654
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.98 E-value=3.8e-08 Score=85.01 Aligned_cols=189 Identities=12% Similarity=-0.008 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011081 248 HTFNALMVGFYREGAFEKVEDVWVEMARLGCEPD-CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG 326 (494)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 326 (494)
..+-.....+.+.|++++|+..|++..+. .|+ ...|... .... ........++.+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-----~~~~--------------~~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-----NVDK--------------NSEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-----HSCT--------------TSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-----hhcc--------------hhhhhHHHHHHHHHH
Confidence 33444555667778888888888887765 233 2223220 0000 000011222336666
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC--HH
Q 011081 327 FCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRR--VF 404 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~--~~ 404 (494)
|.+.|++++|+..|++..+.. +-+...+..+...|...|++++|...|++.++.+ +-+...+..+...|...|+ ..
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHH
Confidence 666777777777777666654 4456666666677777777777777777766653 2245555555555544433 23
Q ss_pred HHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011081 405 EALDILKARVVKFGLFPTEK--SYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFID 466 (494)
Q Consensus 405 ~a~~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 466 (494)
.+...+... ..|+.. .+.....++...|++++|...|++.++ +.|+......+.+
T Consensus 142 ~~~~~~~~~-----~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 142 KLETDYKKL-----SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHC--------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHHH-----hCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 333443321 123332 223334455566777888888877774 4677655554443
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.97 E-value=9.5e-09 Score=105.62 Aligned_cols=173 Identities=10% Similarity=-0.031 Sum_probs=144.8
Q ss_pred HcCCChhHHHHHHHHHh--------cCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 011081 207 SRGKGVISGYEIYREVF--------GLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGC 278 (494)
Q Consensus 207 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 278 (494)
...|++++|.+.++++. ..++ .+...|..+...+.+.|++++|++.|++..+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-----------------~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~- 463 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-----------------ESVELPLMEVRALLDLGDVAKATRKLDDLAERV- 463 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-----------------TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-----------------cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-
Confidence 77899999999999997 4333 267889999999999999999999999998864
Q ss_pred CcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011081 279 EPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHL 358 (494)
Q Consensus 279 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 358 (494)
+-+...|..+..+|.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++ ++.|++..+.+ +.+...|..+
T Consensus 464 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~l 540 (681)
T 2pzi_A 464 GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGL 540 (681)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHH
Confidence 4467889999999999999999999999998874 4467889999999999999999 99999998875 5678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCC
Q 011081 359 VNGYCRAGDVDSAILVYNDMCRKGFEPE-GSTIEVLIGELCDKRR 402 (494)
Q Consensus 359 i~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~ 402 (494)
..+|.+.|++++|.+.|++..+.+ |+ ...+..+..++...+.
T Consensus 541 g~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 541 ARARSAEGDRVGAVRTLDEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HHHHHHcCCHHHHHHHHHhhcccC--cccHHHHHHHHHHHHccCC
Confidence 999999999999999999987764 44 5566666666655444
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.95 E-value=7.6e-08 Score=83.39 Aligned_cols=176 Identities=11% Similarity=0.005 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHH
Q 011081 179 TCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFY 258 (494)
Q Consensus 179 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~ 258 (494)
+|++.|++..+.| ++.++..|...|...+++++|.+.|++..+.+ +...+..|...|.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-------------------~~~a~~~lg~~y~ 61 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-------------------DGDALALLAQLKI 61 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-------------------CHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-------------------CHHHHHHHHHHHH
Confidence 3444555555443 45555555555555566666666666554321 3445555555555
Q ss_pred hcC----CHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHhHHHHHHHHHHc
Q 011081 259 REG----AFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCE----ERRMREAEKLWEEMRDKNVE-HDVVAYNTIIGGFCE 329 (494)
Q Consensus 259 ~~g----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~ 329 (494)
. + ++++|+.+|++..+.| +...+..|...|.. .+++++|.++|++..+.|.. .+...+..|...|..
T Consensus 62 ~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~ 137 (212)
T 3rjv_A 62 R-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS 137 (212)
T ss_dssp S-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred c-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence 4 4 5666666666555543 34455555555554 55566666666655554310 014555555555555
Q ss_pred ----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 011081 330 ----IGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRA-G-----DVDSAILVYNDMCRKG 382 (494)
Q Consensus 330 ----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~~ 382 (494)
.+++++|+..|++..+. ..+...+..|...|... | +.++|...|+...+.|
T Consensus 138 g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 138 GVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp TSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 45566666666655544 12223444444444432 2 5555666655555554
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.95 E-value=7.1e-09 Score=106.59 Aligned_cols=174 Identities=10% Similarity=-0.051 Sum_probs=144.8
Q ss_pred HhcCChhcHHHHHHHHHHHH--------hCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccc
Q 011081 169 LEVKNIEKIETCVDIVRMLM--------SRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRV 240 (494)
Q Consensus 169 ~~~~~~~~~~~a~~~~~~m~--------~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (494)
...|+ +++|++.+++.. +.. +.+...+..+..++...|++++|.+.|+++.+.++.
T Consensus 402 ~~~~~---~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------------ 465 (681)
T 2pzi_A 402 TVLSQ---PVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW------------ 465 (681)
T ss_dssp TTTCC---HHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC------------
T ss_pred ccccC---HHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc------------
Confidence 56777 999999999998 432 236678888999999999999999999999876544
Q ss_pred cccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHH
Q 011081 241 VRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAY 320 (494)
Q Consensus 241 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 320 (494)
+...|..+...|.+.|++++|++.|++..+.. +-+...|..+..+|.+.|++++ .+.|++..+.. +.+...|
T Consensus 466 -----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~ 537 (681)
T 2pzi_A 466 -----RWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAA 537 (681)
T ss_dssp -----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHH
T ss_pred -----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHH
Confidence 78899999999999999999999999998874 3367788999999999999999 99999998874 4577899
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011081 321 NTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGD 367 (494)
Q Consensus 321 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 367 (494)
..+..+|.+.|++++|++.|++..+.+ +-+...+..+..++...++
T Consensus 538 ~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 538 FGLARARSAEGDRVGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 999999999999999999999988764 3346677777777766554
No 100
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.95 E-value=2.4e-08 Score=100.60 Aligned_cols=154 Identities=12% Similarity=-0.034 Sum_probs=120.6
Q ss_pred CCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHH
Q 011081 209 GKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVL 288 (494)
Q Consensus 209 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 288 (494)
.|++++|.+.|+++.+.++. +...|..+...|.+.|++++|++.|++..+.. +.+...+..+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 63 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-----------------DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARL 63 (568)
T ss_dssp -------------------C-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 36788999999998776543 68899999999999999999999999998864 4467889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---
Q 011081 289 MAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRA--- 365 (494)
Q Consensus 289 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--- 365 (494)
...|...|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|.+.|++..+.. +.+...+..+...+...
T Consensus 64 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~ 141 (568)
T 2vsy_A 64 GRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDW 141 (568)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhcc
Confidence 999999999999999999998874 4467899999999999999999999999998875 55678899999999999
Q ss_pred CCHHHHHHHHHHHHHCC
Q 011081 366 GDVDSAILVYNDMCRKG 382 (494)
Q Consensus 366 g~~~~a~~~~~~m~~~~ 382 (494)
|+.++|.+.+++.++.+
T Consensus 142 g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 142 RALDVLSAQVRAAVAQG 158 (568)
T ss_dssp TTHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhcC
Confidence 99999999999998865
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.94 E-value=1.6e-07 Score=81.26 Aligned_cols=177 Identities=15% Similarity=0.038 Sum_probs=123.9
Q ss_pred hHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC----CHHHHHHH
Q 011081 264 EKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIG----EMARAEEF 339 (494)
Q Consensus 264 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~ 339 (494)
.+|++.|++..+.| +...+..|...|...+++++|.++|+...+.| +...+..|...|.. + ++++|++.
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35677777777765 66777778888888888888888888887765 66777777777777 6 78888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHh----cCCHHHHHHHH
Q 011081 340 FREMGLSGVESSSVTFEHLVNGYCR----AGDVDSAILVYNDMCRKGFE-PEGSTIEVLIGELCD----KRRVFEALDIL 410 (494)
Q Consensus 340 ~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~~~~~~a~~~~ 410 (494)
|++..+.| +...+..|...|.. .+++++|+.+|++..+.|.. .+...+..|...|.. .++.++|+..|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 88887654 45666777777766 77888888888888776531 015566666666766 66788888887
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 011081 411 KARVVKFGLFPTEKSYMFLIKGLCEE-G-----KMEEALKVQAEMVGKG 453 (494)
Q Consensus 411 ~~~~~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~ 453 (494)
++..... .+...+..|...|... | +.++|.++|++..+.|
T Consensus 153 ~~A~~~~---~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSLS---RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHTS---CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcC---CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7655441 2334555566666543 2 7778888777777665
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.94 E-value=5.9e-09 Score=84.94 Aligned_cols=142 Identities=8% Similarity=-0.030 Sum_probs=72.9
Q ss_pred HHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhH
Q 011081 205 EVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYS 284 (494)
Q Consensus 205 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 284 (494)
.+...|++++|.+.+......++. +...+..+...|.+.|++++|++.|++..+.. +-+..+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p~-----------------~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a 67 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPRQ-----------------KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKA 67 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHHH-----------------HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCcc-----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 334445556666666555443221 33344455556666666666666666655543 234555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHH
Q 011081 285 YSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEF-FREMGLSGVESSSVTFEHLVNGYC 363 (494)
Q Consensus 285 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~~~~~~~~~li~~~~ 363 (494)
|..+...|.+.|++++|...|+...+.. +-+..+|..+...|.+.|++++|.+. +++..+.. +-+...|......+.
T Consensus 68 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 68 HRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLD 145 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence 5566666666666666666666655542 22455555555666666655544433 34444432 334444444444444
Q ss_pred hcC
Q 011081 364 RAG 366 (494)
Q Consensus 364 ~~g 366 (494)
..|
T Consensus 146 ~~G 148 (150)
T 4ga2_A 146 CEG 148 (150)
T ss_dssp TCC
T ss_pred HhC
Confidence 443
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.93 E-value=7.3e-07 Score=81.16 Aligned_cols=232 Identities=11% Similarity=-0.022 Sum_probs=167.7
Q ss_pred CChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcC--CHhHHHHHHHHHHHcCCCcCHhHHHH
Q 011081 210 KGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREG--AFEKVEDVWVEMARLGCEPDCYSYSV 287 (494)
Q Consensus 210 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~ 287 (494)
...++|+++++.++..+|. +..+||.--..+...| ++++++++++.+.... +-+..+|+.
T Consensus 47 e~s~~aL~~t~~~L~~nP~-----------------~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~ 108 (306)
T 3dra_A 47 EYSERALHITELGINELAS-----------------HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNY 108 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcH-----------------HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHH
Confidence 3446899999999887665 7788888888888888 9999999999988764 334555654
Q ss_pred HHHHH----Hhc---CCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHH--HHHHHHHHHHhCCCCCCHHHHHHH
Q 011081 288 LMAVF----CEE---RRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMA--RAEEFFREMGLSGVESSSVTFEHL 358 (494)
Q Consensus 288 li~~~----~~~---g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~~~~~~~~~l 358 (494)
--..+ .+. +++++++++++.+.+.. +.|-.+|+--.-.+.+.|.++ ++++.++++.+.+ +-|...|+.-
T Consensus 109 R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R 186 (306)
T 3dra_A 109 RQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHR 186 (306)
T ss_dssp HHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 44444 445 78899999999988765 557888888888888888887 8999999998876 5677788877
Q ss_pred HHHHHhcCC------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH-HHHHHHHhC-CCCCCHHHHHHHH
Q 011081 359 VNGYCRAGD------VDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALD-ILKARVVKF-GLFPTEKSYMFLI 430 (494)
Q Consensus 359 i~~~~~~g~------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~-~~~~~~~~~-~~~p~~~~~~~li 430 (494)
...+.+.+. ++++++.++.++..+ +-|...|+.+-..+.+.|+..++.. +..+..... .-..+...+..+.
T Consensus 187 ~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la 265 (306)
T 3dra_A 187 FFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLA 265 (306)
T ss_dssp HHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHH
T ss_pred HHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence 777777666 788888888888775 3477778877777777777555333 433222111 1134667788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHH
Q 011081 431 KGLCEEGKMEEALKVQAEMVGKGFEPS-LEIYSA 463 (494)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ 463 (494)
..|.+.|+.++|.++++.+.+. +.|- ...|+.
T Consensus 266 ~~~~~~~~~~~A~~~~~~l~~~-~Dpir~~yW~~ 298 (306)
T 3dra_A 266 KIYTQQKKYNESRTVYDLLKSK-YNPIRSNFWDY 298 (306)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHhc-cChHHHHHHHH
Confidence 8888888888888888888753 3443 344443
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.92 E-value=3e-08 Score=90.45 Aligned_cols=165 Identities=10% Similarity=0.043 Sum_probs=99.4
Q ss_pred ChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011081 195 KVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMA 274 (494)
Q Consensus 195 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (494)
+...+..+...+...|++++|.+.|+++...+|. +...+..+...+.+.|++++|...+++..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-----------------~~~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-----------------NGEIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-----------------CHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-----------------chhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3444555666666777777777777777665443 55666677777777777777777777665
Q ss_pred HcCCCcCHhHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CCH
Q 011081 275 RLGCEPDCYSYSVL-MAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVE-SSS 352 (494)
Q Consensus 275 ~~g~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~ 352 (494)
.. .|+....... ...+.+.++.+.|...+++..... +.+...+..+...|...|++++|+..|+++.+.... .+.
T Consensus 179 ~~--~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 179 LQ--DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp GG--GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred hh--hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc
Confidence 54 3443322222 222445566666666666665553 345666666677777777777777777766665311 114
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 353 VTFEHLVNGYCRAGDVDSAILVYNDMC 379 (494)
Q Consensus 353 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 379 (494)
..+..++..+...|+.++|...|++.+
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 556666666666666666666665543
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.91 E-value=2e-08 Score=84.25 Aligned_cols=160 Identities=9% Similarity=0.018 Sum_probs=80.7
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC
Q 011081 200 NALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCE 279 (494)
Q Consensus 200 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 279 (494)
..+...+...|++++|...|++....+|. +...|..+...+.+.|++++|+..+++..+. .
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~-----------------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~ 70 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQS-----------------RGDVKLAKADCLLETKQFELAQELLATIPLE--Y 70 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHT-----------------SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--G
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----------------cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--c
Confidence 34444555666666666666665443322 4556666666666666666666666665443 2
Q ss_pred cCHhHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 011081 280 PDCYSYSVLMAV-FCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVES-SSVTFEH 357 (494)
Q Consensus 280 p~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~ 357 (494)
|+...+..+... +...+....|...+++..+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..
T Consensus 71 p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~ 149 (176)
T 2r5s_A 71 QDNSYKSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKT 149 (176)
T ss_dssp CCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHH
T ss_pred CChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHH
Confidence 233222211111 111112223455555555442 2245555556666666666666666666655543111 2335555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 011081 358 LVNGYCRAGDVDSAILVYNDMC 379 (494)
Q Consensus 358 li~~~~~~g~~~~a~~~~~~m~ 379 (494)
+...+...|+.++|...|++.+
T Consensus 150 l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 150 FMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHH
Confidence 5555666666666665555443
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.90 E-value=2.4e-07 Score=81.00 Aligned_cols=188 Identities=10% Similarity=0.025 Sum_probs=129.4
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CC-HHHHH
Q 011081 281 DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVE-H-DVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVE-SS-SVTFE 356 (494)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~-~~~~~ 356 (494)
+...+..+...+.+.|++++|...|+.+.+.... + ....+..+..+|.+.|++++|+..|+++.+.... +. ...+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455666778899999999999999999876311 1 1357888899999999999999999999876311 11 12455
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 011081 357 HLVNGYCR------------------AGDVDSAILVYNDMCRKGFEPEGS-TIEVLIGELCDKRRVFEALDILKARVVKF 417 (494)
Q Consensus 357 ~li~~~~~------------------~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 417 (494)
.+..++.. .|+.++|...|+++++.. |+.. ........ ..+.. .+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~-~~--- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKD-RL--- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHH-HH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHH-HH---
Confidence 55555544 467788888888887753 3322 22111100 00000 01
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccccc
Q 011081 418 GLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS----LEIYSAFIDGYMKEGNVEMATMLRKEMFENQVRQ 491 (494)
Q Consensus 418 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 491 (494)
......+...|.+.|++++|...|+++++. .|+ ...+..+..+|.+.|+.++|.+.++.+...+++.
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 011234567788999999999999999875 444 2568888999999999999999999998877654
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.90 E-value=5.4e-08 Score=88.72 Aligned_cols=166 Identities=10% Similarity=-0.005 Sum_probs=101.0
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH-HH
Q 011081 281 DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEH-LV 359 (494)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-li 359 (494)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+...|.+.|++++|...++++... .|+...... ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 34455666667777777777777777776653 335666777777777777777777777776554 334332222 22
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 011081 360 NGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKM 439 (494)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 439 (494)
..+...++.++|...+++..+.. +.+...+..+...+...|++++|++.|.+.+....-..+...+..++..|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 23455566666666666666653 23455666666666666777777776666555542222245566666666666666
Q ss_pred HHHHHHHHHHH
Q 011081 440 EEALKVQAEMV 450 (494)
Q Consensus 440 ~~A~~~~~~m~ 450 (494)
++|...+++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 66666655543
No 108
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.90 E-value=1.4e-06 Score=79.36 Aligned_cols=218 Identities=8% Similarity=-0.051 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCC--ChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHH
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGK--GVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALM 254 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li 254 (494)
-++|+++.+.++..... +..+|+.--..+...+ +++++++.++.++..+|. +..+|+.--
T Consensus 49 s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-----------------~y~aW~~R~ 110 (306)
T 3dra_A 49 SERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-----------------NYQIWNYRQ 110 (306)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-----------------CCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-----------------cHHHHHHHH
Confidence 57899999999986544 5667888888888888 999999999999887654 667777655
Q ss_pred HHH----Hhc---CCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 255 VGF----YRE---GAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMR--EAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 255 ~~~----~~~---g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
..+ ... +++++++++++.+.+.. +-+-.+|+.-.-.+.+.|.++ ++++.++.+.+.. +.|...|+.-..
T Consensus 111 ~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ 188 (306)
T 3dra_A 111 LIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFF 188 (306)
T ss_dssp HHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 555 555 78999999999999875 557888888888888889888 9999999999876 458888988888
Q ss_pred HHHccCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCChhhHHHHHHH
Q 011081 326 GFCEIGE------MARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDS-AILVYNDMCRKG--FEPEGSTIEVLIGE 396 (494)
Q Consensus 326 ~~~~~g~------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~--~~p~~~~~~~li~~ 396 (494)
.+.+.|+ ++++++.++++.... +-|...|+-+-..+.+.|+..+ +..+.+++.+.+ -..+...+..+...
T Consensus 189 ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~ 267 (306)
T 3dra_A 189 LLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKI 267 (306)
T ss_dssp HHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHH
T ss_pred HHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHH
Confidence 8888777 899999999998876 7788999999989988888544 555666665533 13366788889999
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 011081 397 LCDKRRVFEALDILKARVV 415 (494)
Q Consensus 397 ~~~~~~~~~a~~~~~~~~~ 415 (494)
+.+.|+.++|.++++....
T Consensus 268 ~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 268 YTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHccCCHHHHHHHHHHHHh
Confidence 9999999999999996544
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.88 E-value=1e-07 Score=96.04 Aligned_cols=155 Identities=11% Similarity=-0.078 Sum_probs=119.7
Q ss_pred cCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHH
Q 011081 260 EGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEF 339 (494)
Q Consensus 260 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 339 (494)
.|++++|++.|++..+.. +-+...+..+...|.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999987763 3457889999999999999999999999998874 44688999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHh
Q 011081 340 FREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDK---RRVFEALDILKARVVK 416 (494)
Q Consensus 340 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~ 416 (494)
|++..+.. +.+...+..+...|.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++.+..
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998875 5578899999999999999999999999998875 33567888899999999 9999999999987776
Q ss_pred CC
Q 011081 417 FG 418 (494)
Q Consensus 417 ~~ 418 (494)
..
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.87 E-value=3.4e-07 Score=80.04 Aligned_cols=186 Identities=7% Similarity=-0.044 Sum_probs=131.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-c-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----hH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCE-P-DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDV----VA 319 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~ 319 (494)
+...+..+...+.+.|++++|+..|+++.+..-. | ....+..+..+|.+.|++++|...|+.+.+.. |+. .+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 4566777788899999999999999999876311 1 13577888999999999999999999998763 332 24
Q ss_pred HHHHHHHHHc------------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011081 320 YNTIIGGFCE------------------IGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 320 ~~~li~~~~~------------------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 381 (494)
+..+..++.+ .|++++|...|+++.+.. +-+...+.+.... ..+...+.
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----------~~~~~~~~-- 147 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----------VFLKDRLA-- 147 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----------HHHHHHHH--
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----------HHHHHHHH--
Confidence 5555666554 578999999999998863 2222333221110 00111110
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 382 GFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPT-EKSYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 382 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
.....+...+.+.|++++|+..|++.+....-.|. ...+..+..+|.+.|+.++|.+.++.+...
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 01134566788899999999999987776532221 256778889999999999999999988875
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.85 E-value=5e-08 Score=81.75 Aligned_cols=161 Identities=8% Similarity=0.035 Sum_probs=101.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH-HH
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG-FC 328 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~ 328 (494)
+..+...+.+.|++++|+..|++..+.. +-+...+..+...+.+.|++++|...++...... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4455566777788888888887766543 3355667777777888888888888887776553 243333222211 11
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHH
Q 011081 329 EIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEP-EGSTIEVLIGELCDKRRVFEAL 407 (494)
Q Consensus 329 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~ 407 (494)
+.++..+|...|++..+.. +-+...+..+...+...|++++|...|+++++....+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2222334666777766653 3456677777777777777777777777777654322 2446666777777777777777
Q ss_pred HHHHHHH
Q 011081 408 DILKARV 414 (494)
Q Consensus 408 ~~~~~~~ 414 (494)
..|++.+
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776443
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.85 E-value=1.2e-08 Score=83.01 Aligned_cols=141 Identities=10% Similarity=-0.021 Sum_probs=113.2
Q ss_pred HhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHH
Q 011081 169 LEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVH 248 (494)
Q Consensus 169 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 248 (494)
...|+ +++|++.+......... +...+-.+...|.+.|++++|.+.|++.++.+|. +..
T Consensus 8 ~~~~~---~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-----------------~~~ 66 (150)
T 4ga2_A 8 RSKAD---VERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-----------------DPK 66 (150)
T ss_dssp CCHHH---HHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHH
T ss_pred HHcCh---HHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------CHH
Confidence 34455 89999998887653221 4456677889999999999999999999887654 789
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCHhHHHHHHHHH
Q 011081 249 TFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKL-WEEMRDKNVEHDVVAYNTIIGGF 327 (494)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~g~~~~~~~~~~li~~~ 327 (494)
+|..+..+|.+.|++++|+..|++..+.. +-+..+|..+...|.+.|++++|.+. ++...+.. +-+..+|......+
T Consensus 67 a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 67 AHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLL 144 (150)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH
Confidence 99999999999999999999999998874 34678899999999999999876655 57777653 44677888877777
Q ss_pred HccCC
Q 011081 328 CEIGE 332 (494)
Q Consensus 328 ~~~g~ 332 (494)
...|+
T Consensus 145 ~~~G~ 149 (150)
T 4ga2_A 145 DCEGE 149 (150)
T ss_dssp HTCCC
T ss_pred HHhCc
Confidence 77764
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.84 E-value=1.7e-07 Score=86.34 Aligned_cols=191 Identities=13% Similarity=0.139 Sum_probs=118.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHH
Q 011081 284 SYSVLMAVFCEERRMREAEKLWEEMRDK----NVEH-DVVAYNTIIGGFCEIGEMARAEEFFREMGLS----GVES-SSV 353 (494)
Q Consensus 284 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~ 353 (494)
.|......|...|++++|...|.+..+. |-.. -..+|+.+..+|.+.|++++|+..|++..+. |-.. ...
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4555566777778888888877766442 1000 1346777777888888888888887776432 2111 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCCC-HH
Q 011081 354 TFEHLVNGYCRAGDVDSAILVYNDMCRKGFE---P--EGSTIEVLIGELCDKRRVFEALDILKARVVKF---GLFPT-EK 424 (494)
Q Consensus 354 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~p~-~~ 424 (494)
+++.+...|.. |++++|+..|++.++.... + ...++..+...+...|++++|+..|++.+... +..+. ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 66677777777 8888888888777653110 0 13466777777888888888888887665432 11111 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHH
Q 011081 425 SYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS------LEIYSAFIDGYMKEGNVEMATM 479 (494)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~li~~~~~~g~~~~a~~ 479 (494)
.+..+..++...|++++|...|++.. . .|+ ......++.++ ..|+.+.+.+
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 45556666677788888888888877 3 332 12344455555 5566665555
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.82 E-value=1.7e-07 Score=86.31 Aligned_cols=194 Identities=12% Similarity=0.088 Sum_probs=137.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCC---Cc--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHh
Q 011081 249 TFNALMVGFYREGAFEKVEDVWVEMARLGC---EP--DCYSYSVLMAVFCEERRMREAEKLWEEMRDK----NVEH-DVV 318 (494)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~ 318 (494)
.|+.....|...|++++|...|.+..+... .+ -..+|+.+...|.+.|++++|...|++..+. |-.. -..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 344445678889999999999988765421 11 1357888999999999999999999987543 2111 245
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-hh
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLS----GVES-SSVTFEHLVNGYCRAGDVDSAILVYNDMCRK----GFEPE-GS 388 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~ 388 (494)
+++.+...|.. |++++|+..|++..+. +... ...++..+...|.+.|++++|+..|++.++. +..+. ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 78888999988 9999999999987653 1111 1467888999999999999999999998763 21111 22
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHH
Q 011081 389 TIEVLIGELCDKRRVFEALDILKARVVKFGLFPTE---KSYMFLIKGLCEEGKMEEALKV 445 (494)
Q Consensus 389 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~ 445 (494)
.+..+...+...|++++|...|++.+ ...-.++. .....++.++ ..|+.+.+.++
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 56666677778899999999999766 33222222 2344555555 56777766663
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.81 E-value=4.2e-07 Score=78.50 Aligned_cols=130 Identities=12% Similarity=0.049 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG 326 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 326 (494)
...+..+...+...|++++|+..|++.. .|+...+..+...|.+.|++++|...|+...+.. +.+...|..+..+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 4456677788899999999999998774 6688899999999999999999999999998764 4577889999999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCC----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011081 327 FCEIGEMARAEEFFREMGLSGVES----------------SSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~~~~----------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 382 (494)
|.+.|++++|.+.|++..+.. +. ....+..+...|...|++++|...|+...+..
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999998753 22 23678889999999999999999999998864
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.75 E-value=6.4e-07 Score=81.81 Aligned_cols=164 Identities=8% Similarity=-0.010 Sum_probs=110.5
Q ss_pred HHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 011081 202 LIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPN----VHTFNALMVGFYREGAFEKVEDVWVEMARLG 277 (494)
Q Consensus 202 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 277 (494)
.+..+...|++++|.+++++.....+. .|+ ...+..+...+...|++++|+..|++..+..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~---------------~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~ 145 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEY---------------HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQ 145 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCC---------------CHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccC---------------ChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHh
Confidence 356677888888888888888764332 223 2234446666777778888888888887742
Q ss_pred CC-cC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHh----C-CCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011081 278 CE-PD----CYSYSVLMAVFCEERRMREAEKLWEEMRD----K-NVEH-DVVAYNTIIGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 278 ~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~-g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
.. ++ ..+++.+...|...|++++|...|+++.+ . +..+ ...+|..+...|.+.|++++|.+.+++..+.
T Consensus 146 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 146 LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp CCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 22 22 23678888888888888888888888763 1 1111 2236777888888888888888888776542
Q ss_pred ----CCCC-CHHHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 011081 347 ----GVES-SSVTFEHLVNGYCRAGD-VDSAILVYNDMCR 380 (494)
Q Consensus 347 ----~~~~-~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~ 380 (494)
+..+ -..+|..+...|.+.|+ +++|.+.|++...
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 2112 25667777778888884 5788877777654
No 117
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.74 E-value=2.2e-05 Score=77.07 Aligned_cols=350 Identities=10% Similarity=-0.008 Sum_probs=210.6
Q ss_pred cCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCC-hhHHHHHHHHHHcCCCC-CChHHHHHHHHHHhhhcCCChhh
Q 011081 83 NNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARL-IGPARDVIRVALRSPEN-DPKLKLFEVLVKTYRECGSAPFV 160 (494)
Q Consensus 83 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~ 160 (494)
++.+.+..+|...... .|+...|...+....+.+. .+....+|+.++..-+. ..+..+|...+..+....
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~----- 99 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIE----- 99 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCS-----
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhch-----
Confidence 5677888899888753 3699999998888877663 34566677766653221 112334444333221110
Q ss_pred HHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHc-------------CCChhHHHHHHHHHhcCCc
Q 011081 161 FDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSR-------------GKGVISGYEIYREVFGLDS 227 (494)
Q Consensus 161 ~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~-------------~~~~~~a~~~~~~~~~~~~ 227 (494)
..+++ ++.+..+|++.+.....--...|......-.. .+.+..|..+++++...-+
T Consensus 100 --------~~~~~---~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~ 168 (493)
T 2uy1_A 100 --------DEQTR---IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIR 168 (493)
T ss_dssp --------SHHHH---HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------hhhHH---HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 02344 77888888888874221111222222211100 1123334444444422100
Q ss_pred ccccccccccccccccccCHHHHHHHHHHHHhcC-C------HhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHH
Q 011081 228 DATAGIGKDVKRVVRVRPNVHTFNALMVGFYREG-A------FEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMRE 300 (494)
Q Consensus 228 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 300 (494)
..+...|...+.--...+ . .+.+..+|+++.... +-+...|...+..+.+.|+.+.
T Consensus 169 ----------------~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ 231 (493)
T 2uy1_A 169 ----------------GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEK 231 (493)
T ss_dssp ----------------TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred ----------------hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 013456666555432211 0 345678999988754 4567788888888899999999
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC---C------C---CCCHHHHHHHHHHHHhcCCH
Q 011081 301 AEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS---G------V---ESSSVTFEHLVNGYCRAGDV 368 (494)
Q Consensus 301 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~------~---~~~~~~~~~li~~~~~~g~~ 368 (494)
|..+|++.... +.+...|.. |....+.++. ++.+.+. . . ......|...+..+.+.+..
T Consensus 232 ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~ 302 (493)
T 2uy1_A 232 AKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGL 302 (493)
T ss_dssp HHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCH
Confidence 99999999887 444444432 2222222222 2222211 0 0 11235577777777778889
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011081 369 DSAILVYNDMCRKGFEPEGSTIEVLIGELC-DKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQA 447 (494)
Q Consensus 369 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 447 (494)
+.|..+|+.. +.. ..+...|......-. ..++.+.|..+|+..+...+- +...+...++...+.|+.+.|..+|+
T Consensus 303 ~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~e 378 (493)
T 2uy1_A 303 ELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFLFLLRIGDEENARALFK 378 (493)
T ss_dssp HHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999 321 123334432222222 234699999999988887643 34456677888888999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 448 EMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFE 486 (494)
Q Consensus 448 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 486 (494)
++. .....|...+.--...|+.+.+.+++++..+
T Consensus 379 r~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 379 RLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 973 2578899888888888999999999988875
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.74 E-value=2.8e-06 Score=77.55 Aligned_cols=164 Identities=10% Similarity=0.031 Sum_probs=105.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcC-CCcCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HhH
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARLG-CEPDC----YSYSVLMAVFCEERRMREAEKLWEEMRDKNVE-HD----VVA 319 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~ 319 (494)
+...+..+...|++++|..++++..+.. ..|+. ..+..+...+...|++++|...|+...+.... .+ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3444677888899999999998887642 12221 12334666666777888888888888764222 22 236
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhC-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-hh
Q 011081 320 YNTIIGGFCEIGEMARAEEFFREMGLS-----GVESS-SVTFEHLVNGYCRAGDVDSAILVYNDMCRK----GFEPE-GS 388 (494)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~ 388 (494)
|+.+...|...|++++|+..|+++.+. +..+. ..+|..+...|.+.|++++|...+++.++. +..+. ..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 788888888888888888888887631 11222 236677777788888888888887776542 11111 34
Q ss_pred hHHHHHHHHHhcCC-HHHHHHHHHHH
Q 011081 389 TIEVLIGELCDKRR-VFEALDILKAR 413 (494)
Q Consensus 389 ~~~~li~~~~~~~~-~~~a~~~~~~~ 413 (494)
+|..+...+...|+ .++|.+.+++.
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 55666666666663 46666666543
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.73 E-value=1.1e-06 Score=75.81 Aligned_cols=128 Identities=10% Similarity=-0.023 Sum_probs=110.5
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 011081 198 TCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLG 277 (494)
Q Consensus 198 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 277 (494)
.+..+...+...|++++|.+.|++.. .|+...|..+...|.+.|++++|+..|++..+..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 67 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--------------------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD 67 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--------------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34566778889999999999999883 4578899999999999999999999999998875
Q ss_pred CCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----------------HhHHHHHHHHHHccCCHHHHHHHHH
Q 011081 278 CEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD----------------VVAYNTIIGGFCEIGEMARAEEFFR 341 (494)
Q Consensus 278 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~ 341 (494)
+.+...+..+...|...|++++|.+.|+...+.. +.+ ...+..+..+|.+.|++++|.+.|+
T Consensus 68 -~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 145 (213)
T 1hh8_A 68 -KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145 (213)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4567889999999999999999999999998853 222 2788999999999999999999999
Q ss_pred HHHhCC
Q 011081 342 EMGLSG 347 (494)
Q Consensus 342 ~m~~~~ 347 (494)
+..+..
T Consensus 146 ~al~~~ 151 (213)
T 1hh8_A 146 LATSMK 151 (213)
T ss_dssp HHHTTC
T ss_pred HHHHcC
Confidence 998764
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.72 E-value=2.5e-06 Score=77.85 Aligned_cols=129 Identities=10% Similarity=0.028 Sum_probs=55.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCC---CCC--HHHH
Q 011081 286 SVLMAVFCEERRMREAEKLWEEMRDKNVEHD-----VVAYNTIIGGFCEIGEMARAEEFFREMGLSGV---ESS--SVTF 355 (494)
Q Consensus 286 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~--~~~~ 355 (494)
...+..+...|++++|.+.++...+.....+ ...+..+...+...|++++|+..|++..+... .+. ..+|
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3444455555555555555555544321110 01122333444455555555555555443210 111 2244
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 356 EHLVNGYCRAGDVDSAILVYNDMCR---K-GFEP--EGSTIEVLIGELCDKRRVFEALDILKARV 414 (494)
Q Consensus 356 ~~li~~~~~~g~~~~a~~~~~~m~~---~-~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 414 (494)
+.+...|...|++++|...|++..+ . +..+ ...++..+...|...|++++|+..+++.+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 5555555555555555555555442 1 0000 01244444444445555555555544433
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.72 E-value=6.4e-07 Score=73.70 Aligned_cols=131 Identities=8% Similarity=0.045 Sum_probs=96.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
....|..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...++...+.. +.+...|..+..
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~ 89 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 45667778888888888888888888887764 3456777888888888888888888888887764 446677888888
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHH
Q 011081 326 GFCEIGEMARAEEFFREMGLSGVESSSVTFEH--LVNGYCRAGDVDSAILVYNDMC 379 (494)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m~ 379 (494)
+|.+.|++++|...|++..+.. +.+...+.. +...+...|++++|...+....
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888888888888888877653 334444433 3333666778888887777654
No 122
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.70 E-value=7.2e-07 Score=69.17 Aligned_cols=114 Identities=11% Similarity=0.246 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG 326 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 326 (494)
...|..+...+.+.|++++|.++++++.+.. +.+..++..+...+.+.|++++|..+++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5667777777777777777777777776653 3355666777777777777777777777776653 3456666777777
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011081 327 FCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYC 363 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 363 (494)
|.+.|++++|...|+++.+.. +.+...+..+...+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 777777777777777766543 334444444444433
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.68 E-value=6.5e-07 Score=70.18 Aligned_cols=98 Identities=9% Similarity=0.102 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG 326 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 326 (494)
...|......|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|+..|+..++.. +.+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 4566677777777777777777777776654 3456667777777777777777777777776653 3456667777777
Q ss_pred HHccCCHHHHHHHHHHHHhC
Q 011081 327 FCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~ 346 (494)
|...|++++|++.|++..+.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 77777777777777777665
No 124
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.65 E-value=1.4e-05 Score=73.51 Aligned_cols=222 Identities=7% Similarity=-0.018 Sum_probs=147.9
Q ss_pred CChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHHcCCCcCHhHHHHH
Q 011081 210 KGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREG-AFEKVEDVWVEMARLGCEPDCYSYSVL 288 (494)
Q Consensus 210 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~l 288 (494)
+..++|++++++++..+|. +..+|+.--..+...| .+++++++++.+.... +-+..+|+.-
T Consensus 68 e~se~AL~lt~~~L~~nP~-----------------~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR 129 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-----------------HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHR 129 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-----------------hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3446788888888776654 6777888777777778 5889999998888765 4466677776
Q ss_pred HHHHHhc-C-CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHH--------HHHHHHHHHHhCCCCCCHHHHHHH
Q 011081 289 MAVFCEE-R-RMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMA--------RAEEFFREMGLSGVESSSVTFEHL 358 (494)
Q Consensus 289 i~~~~~~-g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~~~~~~~~l 358 (494)
...+.+. + ++++++++++.+.+.. +.|-.+|+--.-.+.+.|.++ ++++.++++.+.. +-|...|+..
T Consensus 130 ~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R 207 (349)
T 3q7a_A 130 LLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWR 207 (349)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 6666666 6 7888888888888764 447777776666665555555 8888888888775 5677788887
Q ss_pred HHHHHhcCC-------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH--------------------HHHHHHHH
Q 011081 359 VNGYCRAGD-------VDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRV--------------------FEALDILK 411 (494)
Q Consensus 359 i~~~~~~g~-------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~--------------------~~a~~~~~ 411 (494)
...+.+.+. ++++++.+++++... +-|...|+.+-..+.+.|+. ....+...
T Consensus 208 ~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (349)
T 3q7a_A 208 WYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGF 286 (349)
T ss_dssp HHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------C
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHH
Confidence 777777765 677888888877764 33666666665555555543 11111111
Q ss_pred HHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 412 ARVVKF----GLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 412 ~~~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
+..... .-.+.......+++.|...|+.++|.++++.+.+.
T Consensus 287 ~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 287 PMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 111110 01245566667777777777777777777777543
No 125
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.65 E-value=2.9e-05 Score=71.43 Aligned_cols=222 Identities=14% Similarity=0.111 Sum_probs=149.8
Q ss_pred HCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcC-ChhcHHHHHHHHHHHHhCCCCcC
Q 011081 117 RARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVK-NIEKIETCVDIVRMLMSRGLSVK 195 (494)
Q Consensus 117 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~-~~~~~~~a~~~~~~m~~~g~~~~ 195 (494)
+....++|+++++.++.. ...+..+|+.--.++...| . ++++++.++.+.....+ +
T Consensus 66 ~~e~se~AL~lt~~~L~~-------------------nP~~ytaWn~R~~iL~~l~~~---l~eEL~~~~~~L~~nPK-n 122 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRM-------------------NPAHYTVWQYRFSLLTSLNKS---LEDELRLMNEFAVQNLK-S 122 (349)
T ss_dssp TTCCSHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHTTCC-C
T ss_pred hCCCCHHHHHHHHHHHHh-------------------CchhHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHhCCC-c
Confidence 334456788888877762 2233344554444445555 5 99999999999987665 7
Q ss_pred hHhHHHHHHHHHcC-C-ChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHh--------H
Q 011081 196 VSTCNALIWEVSRG-K-GVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFE--------K 265 (494)
Q Consensus 196 ~~~~~~ll~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~--------~ 265 (494)
..+|+.-..++.+. + +.++++++++.+++.++. |..+|+--.-.+.+.|.++ +
T Consensus 123 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-----------------Ny~AW~~R~wvl~~l~~~~~~~~~~~~e 185 (349)
T 3q7a_A 123 YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-----------------NYHTWAYLHWLYSHFSTLGRISEAQWGS 185 (349)
T ss_dssp HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-----------------CHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHHhccccccchhhHHH
Confidence 88899888888776 6 889999999999887654 8888888777776666666 8
Q ss_pred HHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCH-----
Q 011081 266 VEDVWVEMARLGCEPDCYSYSVLMAVFCEERR-------MREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEM----- 333 (494)
Q Consensus 266 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----- 333 (494)
+++.++++.+.. .-|...|+.....+.+.+. ++++++.++.+.... +-|...|+-+-..+.+.|+.
T Consensus 186 ELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~ 263 (349)
T 3q7a_A 186 ELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPIL 263 (349)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCccccc
Confidence 888999888876 4477888888777777775 678888887777664 45777787766666666553
Q ss_pred ---------------HHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 334 ---------------ARAEEFFREMGLSG-----VESSSVTFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 334 ---------------~~A~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
....+...++...+ -.++...+..++..|...|+.++|.++++.+.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 264 PAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22222222222211 024555666666666666666666666666653
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.65 E-value=1.1e-06 Score=72.21 Aligned_cols=94 Identities=9% Similarity=0.045 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011081 285 YSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCR 364 (494)
Q Consensus 285 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 364 (494)
+..+...+...|++++|...|+...+.. +.+..+|..+..+|...|++++|.+.|++..+.. +.+...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3334444444444444444444443332 2233344444444444444444444444443332 2233334444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 011081 365 AGDVDSAILVYNDMCR 380 (494)
Q Consensus 365 ~g~~~~a~~~~~~m~~ 380 (494)
.|++++|...|++..+
T Consensus 94 ~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 94 LGKFRAALRDYETVVK 109 (166)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH
Confidence 4444444444444433
No 127
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.65 E-value=6.4e-07 Score=76.55 Aligned_cols=25 Identities=16% Similarity=-0.092 Sum_probs=14.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 426 YMFLIKGLCEEGKMEEALKVQAEMV 450 (494)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~ 450 (494)
+..+...+...|++++|.+.+++..
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3455555666666666666665554
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.64 E-value=7.3e-06 Score=74.69 Aligned_cols=168 Identities=7% Similarity=-0.027 Sum_probs=121.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC-----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC-
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPD-----CYSYSVLMAVFCEERRMREAEKLWEEMRDKNV---EHD- 316 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~~- 316 (494)
....+...+..+...|++++|.+.+.+..+.....+ ...+..+...+...|++++|...+++..+... .+.
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 345566678888999999999999988776532211 12244466667788999999999998875421 111
Q ss_pred -HhHHHHHHHHHHccCCHHHHHHHHHHHHh---C-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC
Q 011081 317 -VVAYNTIIGGFCEIGEMARAEEFFREMGL---S-GVES--SSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG----FEP 385 (494)
Q Consensus 317 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~-~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p 385 (494)
..+|+.+...|...|++++|...|++..+ . +..+ ...++..+...|...|++++|+..+++.++.. ...
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 45889999999999999999999998863 2 1111 12588889999999999999999999876532 111
Q ss_pred -ChhhHHHHHHHHHhcCCHHHH-HHHHHHH
Q 011081 386 -EGSTIEVLIGELCDKRRVFEA-LDILKAR 413 (494)
Q Consensus 386 -~~~~~~~li~~~~~~~~~~~a-~~~~~~~ 413 (494)
-..+|..+...|...|+.++| ...+++.
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 145677778888888888888 6656643
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.63 E-value=9.9e-07 Score=69.01 Aligned_cols=120 Identities=8% Similarity=0.028 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
+...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 56677777788888888888888888877653 3356677777777888888888888888777653 335667777777
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 011081 326 GFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDV 368 (494)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 368 (494)
.|.+.|++++|...|++..+.. +.+...+..+...+.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 7788888888888887776653 34556666666666666553
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.62 E-value=4.8e-07 Score=82.06 Aligned_cols=96 Identities=14% Similarity=-0.019 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011081 283 YSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGY 362 (494)
Q Consensus 283 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 362 (494)
..+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|...+++..+.. +.+...+..+..+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344555555555566666666665555442 2245555556666666666666666666655543 33455555566666
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 011081 363 CRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 363 ~~~g~~~~a~~~~~~m~~ 380 (494)
...|++++|...|+...+
T Consensus 83 ~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666665554
No 131
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.61 E-value=3e-06 Score=75.37 Aligned_cols=206 Identities=8% Similarity=-0.055 Sum_probs=143.2
Q ss_pred hcCChhcHHHHHHHHHHHHhCCCCcChHhHHHH-------HHHHHcCCChhHHHHHHHHHhcCCccccccccc-ccc---
Q 011081 170 EVKNIEKIETCVDIVRMLMSRGLSVKVSTCNAL-------IWEVSRGKGVISGYEIYREVFGLDSDATAGIGK-DVK--- 238 (494)
Q Consensus 170 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~--- 238 (494)
..++ ...|.+.|.+..+.... ....|+.+ ..++.+.++..++...+...++..+........ ...
T Consensus 18 ~~~d---~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMS---EARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCC
T ss_pred cCCC---HHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccc
Confidence 4577 99999999999987644 56777777 455555555566666666665544431110000 000
Q ss_pred cccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--C
Q 011081 239 RVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEH--D 316 (494)
Q Consensus 239 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~ 316 (494)
-.+.+.--...+-.....+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .| .
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 000111123445667788889999999999999887654 544466667778999999999999998665432 11 1
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011081 317 VVAYNTIIGGFCEIGEMARAEEFFREMGLSGVES--SSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 382 (494)
...+..+..++.+.|++++|+..|++.......| ..........++.+.|+.++|..+|+++...+
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3477888899999999999999999987544324 34466777888899999999999999998864
No 132
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.61 E-value=1.1e-06 Score=68.85 Aligned_cols=110 Identities=14% Similarity=0.083 Sum_probs=92.2
Q ss_pred HhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 011081 197 STCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARL 276 (494)
Q Consensus 197 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 276 (494)
..+......|.+.|++++|.+.|++.++.+|. +..+|..+..+|.+.|++++|+..|++.++.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 76 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-----------------NAILYSNRAACLTKLMEFQRALDDCDTCIRL 76 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHh
Confidence 55777888999999999999999999876654 7889999999999999999999999999887
Q ss_pred CCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 277 GCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 277 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
. +.+...|..+..+|...|++++|.+.|+...+.. +-+...+..+..
T Consensus 77 ~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~~ 123 (126)
T 4gco_A 77 D-SKFIKGYIRKAACLVAMREWSKAQRAYEDALQVD-PSNEEAREGVRN 123 (126)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred h-hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHHH
Confidence 5 4467889999999999999999999999998873 335555554443
No 133
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.61 E-value=1.5e-06 Score=67.30 Aligned_cols=115 Identities=12% Similarity=0.207 Sum_probs=92.3
Q ss_pred hHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 011081 196 VSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMAR 275 (494)
Q Consensus 196 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (494)
...+..+...+...|++++|.+.|+++....+. +..+|..+...+.+.|++++|..+++++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 71 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-----------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-----------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 566778888889999999999999998765432 677888999999999999999999999887
Q ss_pred cCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc
Q 011081 276 LGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCE 329 (494)
Q Consensus 276 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 329 (494)
.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+.+
T Consensus 72 ~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 72 LD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred hC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 64 4467788889999999999999999999988764 3455566666555544
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.60 E-value=1.1e-06 Score=69.23 Aligned_cols=120 Identities=11% Similarity=0.053 Sum_probs=81.0
Q ss_pred ccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHH
Q 011081 244 RPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTI 323 (494)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 323 (494)
..+...|..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 3466777777888888888888888888777653 3356667777777777777777777777776653 3356677777
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011081 324 IGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAG 366 (494)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 366 (494)
..+|.+.|++++|.+.|++..+.. +.+...+..+...+...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 777777777777777777766543 233444555555554443
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.60 E-value=7.5e-07 Score=74.45 Aligned_cols=122 Identities=7% Similarity=0.059 Sum_probs=98.7
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH-HHccCCH--H
Q 011081 258 YREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG-FCEIGEM--A 334 (494)
Q Consensus 258 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~--~ 334 (494)
...|++++|...+++..+.. +.+...+..+...|...|++++|...|+...+.. +.+...+..+..+ |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 45688999999999887764 4467888999999999999999999999988764 3467788888888 7788998 9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011081 335 RAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 335 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 382 (494)
+|...|++..+.. +.+...+..+...|...|++++|...|+.+.+..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999988775 4567888888999999999999999999998864
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.60 E-value=1.2e-06 Score=74.91 Aligned_cols=157 Identities=12% Similarity=0.008 Sum_probs=113.6
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHhHHHHHHHHHHccCC
Q 011081 258 YREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK----NVE-HDVVAYNTIIGGFCEIGE 332 (494)
Q Consensus 258 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~ 332 (494)
...|++++|.++++.+... ......++..+...+...|++++|...+++..+. +.. ....++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4679999999966555432 1235677888999999999999999999987652 212 235678888899999999
Q ss_pred HHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CChhhHHHHHHHHHhcC
Q 011081 333 MARAEEFFREMGLS----GVES--SSVTFEHLVNGYCRAGDVDSAILVYNDMCRK----GFE-PEGSTIEVLIGELCDKR 401 (494)
Q Consensus 333 ~~~A~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~~ 401 (494)
+++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++..+. +.. .-..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999987653 2111 2455788888999999999999999987742 211 11234577788889999
Q ss_pred CHHHHHHHHHHHHH
Q 011081 402 RVFEALDILKARVV 415 (494)
Q Consensus 402 ~~~~a~~~~~~~~~ 415 (494)
++++|.+.+++.+.
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999885443
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.59 E-value=5e-07 Score=73.18 Aligned_cols=99 Identities=13% Similarity=0.098 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
+...|..+...+.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|...|++..+.. +.+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 55667777778888888888888888877764 3456777777788888888888888888877664 345677777888
Q ss_pred HHHccCCHHHHHHHHHHHHhC
Q 011081 326 GFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~~ 346 (494)
+|.+.|++++|...|++..+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888877765
No 138
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.58 E-value=4.6e-07 Score=73.33 Aligned_cols=99 Identities=15% Similarity=0.053 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
+...+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|...|+...... +.+...|..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 45556666666777777777777777666553 3355566666666667777777777776666543 334556666666
Q ss_pred HHHccCCHHHHHHHHHHHHhC
Q 011081 326 GFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~~ 346 (494)
+|...|++++|.+.|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666543
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.58 E-value=1.4e-06 Score=68.44 Aligned_cols=118 Identities=9% Similarity=-0.012 Sum_probs=77.8
Q ss_pred ChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011081 195 KVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMA 274 (494)
Q Consensus 195 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (494)
+...+..+...+...|++++|.+.|++.....+. +...|..+...+...|++++|+..+++..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 77 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-----------------DAKLYSNRAACYTKLLEFQLALKDCEECI 77 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-----------------CHHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----------------cHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4455666677777777777777777777665432 56667777777777777777777777776
Q ss_pred HcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC
Q 011081 275 RLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIG 331 (494)
Q Consensus 275 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 331 (494)
+.. +.+...+..+...+.+.|++++|.+.|++..+.. +.+...+..+..++.+.|
T Consensus 78 ~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 78 QLE-PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HhC-CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 653 3355667777777777777777777777776552 223455555555555444
No 140
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.57 E-value=5.1e-07 Score=81.88 Aligned_cols=193 Identities=6% Similarity=-0.034 Sum_probs=124.4
Q ss_pred hhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccc
Q 011081 158 PFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDV 237 (494)
Q Consensus 158 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 237 (494)
...+..+...+.+.|+ +++|+..|+...+.... +...|..+..+|.+.|++++|.+.++++...++.
T Consensus 4 a~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--------- 70 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRK---YPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ--------- 70 (281)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT---------
T ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---------
Confidence 3455666777888888 99999999998886433 6778888888999999999999999999876554
Q ss_pred ccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011081 238 KRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDC-YSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD 316 (494)
Q Consensus 238 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 316 (494)
+...|..+..+|.+.|++++|+..|++..+.. |+. ..+...+....+. .++.. +..........+
T Consensus 71 --------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~ 136 (281)
T 2c2l_A 71 --------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQE 136 (281)
T ss_dssp --------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCC
T ss_pred --------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhh
Confidence 67888888999999999999999998877642 211 1111112111111 11111 222222333444
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 011081 317 VVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRA-GDVDSAILVYNDMCR 380 (494)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~ 380 (494)
......+... ..|+.++|++.+++..+.. +.+......+...+.+. +.+++|.++|..+.+
T Consensus 137 ~~i~~~l~~l--~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 137 SELHSYLTRL--IAAERERELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp CHHHHHHHHH--HHHHHHHHHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4444444332 2688888888888777653 23333334444444444 567788888887765
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.55 E-value=4.5e-07 Score=75.80 Aligned_cols=122 Identities=8% Similarity=0.129 Sum_probs=100.7
Q ss_pred HcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHH
Q 011081 207 SRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYS 286 (494)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 286 (494)
...|++++|.+.+++.....+. +...|..+...|...|++++|...|++..+.. +.+...+.
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~-----------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 82 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQ-----------------NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYA 82 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCS-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCC-----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 4567888999999988765543 77899999999999999999999999998764 34667788
Q ss_pred HHHHH-HHhcCCH--HHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 011081 287 VLMAV-FCEERRM--REAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSG 347 (494)
Q Consensus 287 ~li~~-~~~~g~~--~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 347 (494)
.+... +...|++ ++|...++...+.. +.+...+..+...|...|++++|...|++..+..
T Consensus 83 ~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 83 ALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888 7789998 99999999998874 4467889999999999999999999999998864
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.55 E-value=2.3e-06 Score=76.11 Aligned_cols=187 Identities=6% Similarity=-0.095 Sum_probs=130.2
Q ss_pred cCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHH-------HHHHHhcCCHhHHHHHHHHHHHcCCCc
Q 011081 208 RGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNAL-------MVGFYREGAFEKVEDVWVEMARLGCEP 280 (494)
Q Consensus 208 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~g~~p 280 (494)
..++...|.+.|.++...+|. ....|+.+ ...+.+.++..+++..+..-.+ +.|
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-----------------~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p 78 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-----------------ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISM 78 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCG
T ss_pred cCCCHHHHHHHHHHHHHhChh-----------------hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CCh
Confidence 578999999999999887765 67888887 4666666666666666655444 222
Q ss_pred C----------------------HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHH
Q 011081 281 D----------------------CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEE 338 (494)
Q Consensus 281 ~----------------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 338 (494)
+ ...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+.
T Consensus 79 ~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~ 156 (282)
T 4f3v_A 79 STLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVID 156 (282)
T ss_dssp GGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHH
Confidence 1 1233456677888899999999998887653 444366667778888899999999
Q ss_pred HHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 339 FFREMGLSGVESS--SVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPE--GSTIEVLIGELCDKRRVFEALDILKARV 414 (494)
Q Consensus 339 ~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~ 414 (494)
.|+...... .|. ...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|++..
T Consensus 157 ~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 157 QVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 887554321 111 23667778888888888888888888875432243 2344555666777888888888887655
Q ss_pred Hh
Q 011081 415 VK 416 (494)
Q Consensus 415 ~~ 416 (494)
..
T Consensus 236 a~ 237 (282)
T 4f3v_A 236 TT 237 (282)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 143
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.53 E-value=1.8e-06 Score=67.49 Aligned_cols=120 Identities=8% Similarity=0.055 Sum_probs=82.9
Q ss_pred ChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011081 195 KVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMA 274 (494)
Q Consensus 195 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (494)
+...+..+...+...|++++|.+.|++.....+. +...|..+...+...|++++|...+++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 73 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-----------------NAVYFCNRAAAYSKLGNYAGAVQDCERAI 73 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-----------------CHHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 3455666667777777777777777777654332 56677777777777888888888887777
Q ss_pred HcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCH
Q 011081 275 RLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEM 333 (494)
Q Consensus 275 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 333 (494)
+.. +.+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++
T Consensus 74 ~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 74 CID-PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred hcC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 653 3346677777777888888888888887776653 33566666777776666653
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.53 E-value=2.4e-06 Score=79.62 Aligned_cols=130 Identities=8% Similarity=0.012 Sum_probs=101.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC----------------HhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPD----------------CYSYSVLMAVFCEERRMREAEKLWEEMR 309 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~ 309 (494)
+...|..+...|.+.|++++|+..|++..+.. |+ ..+|..+..+|.+.|++++|...+++..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56788889999999999999999999988764 33 3677888888888888888888888887
Q ss_pred hCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 011081 310 DKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSA-ILVYNDMC 379 (494)
Q Consensus 310 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 379 (494)
+.. +.+...|..+..+|...|++++|+..|++..+.. +.+...+..+...+.+.|+.++| ...|+.|.
T Consensus 224 ~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 224 ELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 764 4467788888888888888888888888887764 45667777777788888887777 44555554
No 145
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.52 E-value=2.8e-06 Score=68.73 Aligned_cols=99 Identities=11% Similarity=0.001 Sum_probs=72.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011081 282 CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNG 361 (494)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 361 (494)
...+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|+..|++..+.. +-+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 3456667777777788888888887777664 4466777777777777888888888877777654 4456677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCC
Q 011081 362 YCRAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 362 ~~~~g~~~~a~~~~~~m~~~~ 382 (494)
|...|++++|...|+..++..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 777788888887777777653
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.51 E-value=1.1e-06 Score=71.10 Aligned_cols=96 Identities=8% Similarity=-0.063 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011081 283 YSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGY 362 (494)
Q Consensus 283 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 362 (494)
..+..+...+.+.|++++|...|+...... +.+...|..+..+|.+.|++++|+..|++..... +.+...+..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 344445555555555555555555555442 2345555555555555555555555555555443 33444555555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 011081 363 CRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 363 ~~~g~~~~a~~~~~~m~~ 380 (494)
...|++++|...|+..++
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555544
No 147
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.50 E-value=8.6e-05 Score=67.94 Aligned_cols=235 Identities=9% Similarity=0.013 Sum_probs=166.1
Q ss_pred HHHHHHHHHH---HHhcCCHh-HHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCC
Q 011081 247 VHTFNALMVG---FYREGAFE-KVEDVWVEMARLGCEPDCYSYSVLMAVFCEERR----------MREAEKLWEEMRDKN 312 (494)
Q Consensus 247 ~~~~~~li~~---~~~~g~~~-~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g 312 (494)
+..|..+.+. ..+.|.++ +|+++++.+...+ +-+..+|+.--..+...+. +++++.+++.+....
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 4445444433 34566655 7999999998764 2234445543333333332 678899999988764
Q ss_pred CCCCHhHHHHHHHHHHccC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCChhh
Q 011081 313 VEHDVVAYNTIIGGFCEIG--EMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGD-VDSAILVYNDMCRKGFEPEGST 389 (494)
Q Consensus 313 ~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~ 389 (494)
+-+..+|+.-...+.+.| .+++++++++.+.+.. +.|...|+.-...+...|. ++++++.++.+++.++ -|...
T Consensus 105 -PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SA 181 (331)
T 3dss_A 105 -PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSS 181 (331)
T ss_dssp -TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHH
T ss_pred -CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHH
Confidence 557888888888888877 4899999999999886 6788899888888888888 6999999999998764 36777
Q ss_pred HHHHHHHHHhc--------------CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHH
Q 011081 390 IEVLIGELCDK--------------RRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEE-----------GKMEEALK 444 (494)
Q Consensus 390 ~~~li~~~~~~--------------~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~ 444 (494)
|+.....+.+. +.++++++.+.+.+... +-|...|+-+-..+.+. +.++++++
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~ 259 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE 259 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence 77766655554 45788999999888765 24556666554444444 45889999
Q ss_pred HHHHHHhCCCCCCHHHHHH--HH---HHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 445 VQAEMVGKGFEPSLEIYSA--FI---DGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 445 ~~~~m~~~~~~p~~~~~~~--li---~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
.++++.+. .||. .|.. ++ .+....|..+++...+.++++.+|.
T Consensus 260 ~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 260 SCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp HHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 99999964 6663 3332 21 2223568888999999999987663
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.50 E-value=2.8e-07 Score=78.75 Aligned_cols=132 Identities=8% Similarity=0.019 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CcC--------------HhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGC-EPD--------------CYSYSVLMAVFCEERRMREAEKLWEEMRD 310 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 310 (494)
....+..+...+.+.|++++|+..|++..+..- .|+ ...|..+..+|.+.|++++|...++...+
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 455667777778888888888888888776421 110 14566666666777777777777776665
Q ss_pred CCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 011081 311 KNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAI-LVYNDMC 379 (494)
Q Consensus 311 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~ 379 (494)
.. +.+...|..+..+|...|++++|.+.|++..+.. +-+...+..+...+...++.+++. ..|..|.
T Consensus 117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 53 3355666666677777777777777777666543 334555555655555555555544 3344443
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.48 E-value=8.8e-06 Score=62.13 Aligned_cols=98 Identities=12% Similarity=0.060 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG 326 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 326 (494)
...|..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4556666677777777777777777766653 3355566666667777777777777777666553 3345666666666
Q ss_pred HHccCCHHHHHHHHHHHHhC
Q 011081 327 FCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~ 346 (494)
|...|++++|.+.|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 77777777777777666654
No 150
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.46 E-value=1.6e-06 Score=69.51 Aligned_cols=99 Identities=13% Similarity=0.083 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
+...+..+...+.+.|++++|+..|++..... +.+...|..+..+|.+.|++++|...|+...... +.+...|..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 45666777778888888888888888887764 4466777788888888888888888888887764 446677778888
Q ss_pred HHHccCCHHHHHHHHHHHHhC
Q 011081 326 GFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~~ 346 (494)
+|...|++++|.+.|++..+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888877654
No 151
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.45 E-value=3.2e-06 Score=78.73 Aligned_cols=145 Identities=7% Similarity=-0.022 Sum_probs=110.4
Q ss_pred ChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccccccccc-CHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 011081 195 KVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRP-NVHTFNALMVGFYREGAFEKVEDVWVEM 273 (494)
Q Consensus 195 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m 273 (494)
+...+..+...|.+.|++++|.+.|++++...+.....-. .......| ...+|..+..+|.+.|++++|+..+++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~---~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN---EEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS---HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCCh---HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456777788888888888888888888765443000000 00000000 1588999999999999999999999999
Q ss_pred HHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHH-HHHHHHHH
Q 011081 274 ARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARA-EEFFREMG 344 (494)
Q Consensus 274 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 344 (494)
.+.. +.+...|..+..+|...|++++|...|++..+.. +.+..++..+..++.+.|+.++| ..+|+.|.
T Consensus 223 l~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 223 LELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9875 4477889999999999999999999999998874 44678899999999999999988 45666664
No 152
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.44 E-value=0.00019 Score=70.39 Aligned_cols=83 Identities=11% Similarity=0.109 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCC-hhHHHHHHHHHhcCCccccccccccccccccc-ccCHHHHHHHH
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKG-VISGYEIYREVFGLDSDATAGIGKDVKRVVRV-RPNVHTFNALM 254 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~li 254 (494)
.+.+.++|++.+.. .|++..|...+.-..+.+. .+....+|+.+... .|. ..+...|...+
T Consensus 30 ~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~---------------vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 30 YRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQ---------------FENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHH---------------STTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH---------------cCCCcccHHHHHHHH
Confidence 99999999999873 4688899888877766653 35567777777542 111 23667788877
Q ss_pred HHHH----hcCCHhHHHHHHHHHHHc
Q 011081 255 VGFY----REGAFEKVEDVWVEMARL 276 (494)
Q Consensus 255 ~~~~----~~g~~~~a~~~~~~m~~~ 276 (494)
..+. ..|+.+.+..+|++.+..
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 6554 245677888888888763
No 153
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.41 E-value=3.3e-05 Score=74.51 Aligned_cols=197 Identities=10% Similarity=-0.046 Sum_probs=115.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCcCH----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC
Q 011081 254 MVGFYREGAFEKVEDVWVEMARLGCEPDC----------------YSYSVLMAVFCEERRMREAEKLWEEMRDKN-VEHD 316 (494)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~----------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~ 316 (494)
...+.+.|++++|++.|.++.+..-.... ..+..+...|.+.|++++|.+++..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 35567788888888888888775322110 135667778888888888888877765421 0111
Q ss_pred H----hHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--
Q 011081 317 V----VAYNTIIGGFCEIGEMARAEEFFREMGLS----GVES-SSVTFEHLVNGYCRAGDVDSAILVYNDMCRK--GF-- 383 (494)
Q Consensus 317 ~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~-- 383 (494)
. .+.+.+-..+...|++++|.+++++.... +..+ -..++..+...|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 12333334444567777777777766432 2222 2345666777777777777777777776542 11
Q ss_pred CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 384 EP-EGSTIEVLIGELCDKRRVFEALDILKARVVKF---GLFPT--EKSYMFLIKGLCEEGKMEEALKVQAEMV 450 (494)
Q Consensus 384 ~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (494)
.+ ...++..++..|...|++++|..++++..... +..+. ...+..+...+...|++++|...|.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11 13356666677777777777777776544321 11111 1344555555666677777777666664
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.38 E-value=1.3e-05 Score=62.46 Aligned_cols=97 Identities=16% Similarity=0.120 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG 326 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 326 (494)
...|..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|...++...+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3455666666666777777777776666553 3345566666666666666666666666666553 3345566666666
Q ss_pred HHccCCHHHHHHHHHHHHh
Q 011081 327 FCEIGEMARAEEFFREMGL 345 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~ 345 (494)
|...|++++|...|++..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 6666666666666666554
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.36 E-value=1.5e-05 Score=60.72 Aligned_cols=110 Identities=15% Similarity=0.127 Sum_probs=79.4
Q ss_pred hHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 011081 196 VSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMAR 275 (494)
Q Consensus 196 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (494)
...+..+...+...|++++|.+.|++.....+. +...|..+...+.+.|++++|...+++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 66 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-----------------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 66 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-----------------cHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 445666777777888888888888887664432 667778888888888888888888888777
Q ss_pred cCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHH
Q 011081 276 LGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTII 324 (494)
Q Consensus 276 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 324 (494)
.. +.+...+..+...+...|++++|.+.++...+.+ +.+...+..+.
T Consensus 67 ~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 113 (118)
T 1elw_A 67 LK-PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQ 113 (118)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHH
T ss_pred hC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 64 3356677788888888888888888888887663 23444444433
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.35 E-value=1.3e-05 Score=62.49 Aligned_cols=98 Identities=10% Similarity=0.044 Sum_probs=73.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011081 282 CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNG 361 (494)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 361 (494)
...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456667777778888888888888777654 4466777788888888888888888888877764 4556777777778
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 011081 362 YCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 362 ~~~~g~~~~a~~~~~~m~~~ 381 (494)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 88888888888888777664
No 157
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.35 E-value=2.6e-05 Score=75.27 Aligned_cols=164 Identities=5% Similarity=-0.091 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHc-CCCcCHh----HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHh
Q 011081 249 TFNALMVGFYREGAFEKVEDVWVEMARL-GCEPDCY----SYSVLMAVFCEERRMREAEKLWEEMRD----KNVEH-DVV 318 (494)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~-~~~ 318 (494)
++..+...|.+.|++++|.+++..+... +..++.. +.+.+-..+...|+++.|..+++.... .+..+ -..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 4667778888888888888888776543 1111221 222233334446778888888777643 22222 245
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--h
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLS----GVES-SSVTFEHLVNGYCRAGDVDSAILVYNDMCRK----GFEPE--G 387 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~ 387 (494)
++..+...|...|++++|..+++++... +-.+ ...++..++..|...|++++|..+++..... +..+. .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 6777788888888888888888876543 1111 2346777778888888888888888776542 11111 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 388 STIEVLIGELCDKRRVFEALDILKA 412 (494)
Q Consensus 388 ~~~~~li~~~~~~~~~~~a~~~~~~ 412 (494)
..+..+...+...+++++|...|.+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3445555666677888888777763
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.35 E-value=1.2e-05 Score=66.15 Aligned_cols=99 Identities=10% Similarity=0.043 Sum_probs=63.3
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011081 281 DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVN 360 (494)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 360 (494)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34456666666667777777777776666553 3356666666666666777777777766666553 344566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 011081 361 GYCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 361 ~~~~~g~~~~a~~~~~~m~~~ 381 (494)
.|...|++++|...|++.++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 666666666666666666554
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.34 E-value=7.7e-06 Score=64.05 Aligned_cols=97 Identities=19% Similarity=0.218 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HhHHH
Q 011081 248 HTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNV--EHD----VVAYN 321 (494)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~~~ 321 (494)
.++..+...+.+.|++++|+..|++.++.. +-+...|..+..+|.+.|++++|++.++..++... ..+ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 344445555555555555555555554442 22344455555555555555555555555443210 000 12455
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh
Q 011081 322 TIIGGFCEIGEMARAEEFFREMGL 345 (494)
Q Consensus 322 ~li~~~~~~g~~~~A~~~~~~m~~ 345 (494)
.+..+|...|++++|++.|++...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555556666666666666665554
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.33 E-value=9.7e-06 Score=63.46 Aligned_cols=109 Identities=10% Similarity=0.165 Sum_probs=88.7
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCCC----HHHH
Q 011081 282 CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSG--VESS----SVTF 355 (494)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~----~~~~ 355 (494)
..++..+...+.+.|++++|+..|++.++.. +.+...|+.+..+|.+.|++++|++.|++..+.+ ..++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3567789999999999999999999998874 4578899999999999999999999999987642 1111 2467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 011081 356 EHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVL 393 (494)
Q Consensus 356 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 393 (494)
..+...+...|++++|++.|++.++. .||..+...+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 88899999999999999999998875 4565554433
No 161
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.31 E-value=7.8e-06 Score=63.79 Aligned_cols=109 Identities=14% Similarity=0.161 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HhHH
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNV--EHD----VVAY 320 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~~ 320 (494)
...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++...+... .++ ..+|
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4556667777777777777777777776654 33556667777777777777777777777655421 111 5566
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011081 321 NTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHL 358 (494)
Q Consensus 321 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 358 (494)
..+..+|.+.|++++|.+.|++..+. .|+...+..+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 66667777777777777777776654 2344444433
No 162
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.30 E-value=0.00076 Score=61.69 Aligned_cols=234 Identities=9% Similarity=-0.029 Sum_probs=167.1
Q ss_pred HcCCCh-hHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCC----------HhHHHHHHHHHHH
Q 011081 207 SRGKGV-ISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGA----------FEKVEDVWVEMAR 275 (494)
Q Consensus 207 ~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~ 275 (494)
.+.|.+ ++|+++++.++..+|. +..+||.--..+...+. +++++.+++.+..
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-----------------~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~ 102 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-----------------FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR 102 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-----------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-----------------hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHH
Confidence 344554 4899999999988765 67777765444444333 6789999999988
Q ss_pred cCCCcCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC-HHHHHHHHHHHHhCCCCCCH
Q 011081 276 LGCEPDCYSYSVLMAVFCEER--RMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGE-MARAEEFFREMGLSGVESSS 352 (494)
Q Consensus 276 ~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~ 352 (494)
.. +-+..+|+.-.-.+.+.+ .+++++.+++.+.+.. +-|..+|+--.-.+...|. ++++++.++++.+.. +-|.
T Consensus 103 ~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~ 179 (331)
T 3dss_A 103 VN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNY 179 (331)
T ss_dssp HC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCH
T ss_pred hC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCH
Confidence 65 457778887777777877 4899999999998875 5588889888888888888 599999999999876 6788
Q ss_pred HHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-----------CCHHHHH
Q 011081 353 VTFEHLVNGYCRA--------------GDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDK-----------RRVFEAL 407 (494)
Q Consensus 353 ~~~~~li~~~~~~--------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----------~~~~~a~ 407 (494)
..|+.....+.+. +.++++++.++..+... +-|...|+.+-..+.+. +.+++++
T Consensus 180 SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el 258 (331)
T 3dss_A 180 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSEL 258 (331)
T ss_dssp HHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHH
Confidence 8888877766655 45789999999998865 33667776555555554 4578888
Q ss_pred HHHHHHHHhCCCCCCH-HHHHHHHH---HHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 011081 408 DILKARVVKFGLFPTE-KSYMFLIK---GLCEEGKMEEALKVQAEMVGKGFEPS-LEIYSAFID 466 (494)
Q Consensus 408 ~~~~~~~~~~~~~p~~-~~~~~li~---~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~ 466 (494)
+.+.+.++.. |+. ..+..++. +....|..+++...+.++++. .|. ..-|.-+..
T Consensus 259 ~~~~elle~~---pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 259 ESCKELQELE---PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRS 317 (331)
T ss_dssp HHHHHHHHHC---TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH--CGGGHHHHHHHHH
T ss_pred HHHHHHHhhC---cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh--CcchhhHHHHHHH
Confidence 8888766654 553 22222221 222457788888999999853 554 333444333
No 163
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.29 E-value=7.6e-06 Score=61.84 Aligned_cols=94 Identities=15% Similarity=0.128 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHhHHHHHHHHH
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEH--DVVAYNTIIGGF 327 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~ 327 (494)
|..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +. +...|..+..+|
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 3344444444444444444444444332 2233334444444444444444444444444332 11 233444444444
Q ss_pred Hcc-CCHHHHHHHHHHHHh
Q 011081 328 CEI-GEMARAEEFFREMGL 345 (494)
Q Consensus 328 ~~~-g~~~~A~~~~~~m~~ 345 (494)
.+. |++++|.+.|++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGG
T ss_pred HHHhCCHHHHHHHHHHHhh
Confidence 444 444444444444433
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.29 E-value=1.9e-05 Score=62.37 Aligned_cols=95 Identities=14% Similarity=-0.018 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011081 283 YSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGY 362 (494)
Q Consensus 283 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 362 (494)
..+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|...|++..+.. +.+...|..+...|
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 334444444444444444444444443332 2233444444444444444444444444444432 22334444444444
Q ss_pred HhcCCHHHHHHHHHHHH
Q 011081 363 CRAGDVDSAILVYNDMC 379 (494)
Q Consensus 363 ~~~g~~~~a~~~~~~m~ 379 (494)
...|++++|...|+...
T Consensus 88 ~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 88 LEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 44444444444444443
No 165
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.29 E-value=1e-05 Score=68.89 Aligned_cols=148 Identities=9% Similarity=-0.038 Sum_probs=100.0
Q ss_pred hHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 011081 196 VSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMAR 275 (494)
Q Consensus 196 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (494)
...+..+...+...|++++|.+.|++.....+......... ............|..+..+|.+.|++++|+..+++..+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI-LLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHH-HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhh-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34456677778888999999999998876544200000000 00000000137888999999999999999999999988
Q ss_pred cCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHH-HHHHHHHhC
Q 011081 276 LGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAE-EFFREMGLS 346 (494)
Q Consensus 276 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~ 346 (494)
.. +.+...+..+..+|...|++++|...|+...+.. +.+...+..+..++...++.+++. ..|..|...
T Consensus 117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 74 4567889999999999999999999999998764 446778888888888888777766 555555443
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.29 E-value=2e-05 Score=64.70 Aligned_cols=101 Identities=10% Similarity=0.054 Sum_probs=90.5
Q ss_pred ccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHH
Q 011081 244 RPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTI 323 (494)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 323 (494)
..+...|..+...+.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|+..|+...+.. +.+...|..+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 85 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL 85 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3467889999999999999999999999998875 4477889999999999999999999999998875 4468899999
Q ss_pred HHHHHccCCHHHHHHHHHHHHhC
Q 011081 324 IGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
..+|.+.|++++|.+.|++..+.
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999998875
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=2.7e-05 Score=62.30 Aligned_cols=111 Identities=14% Similarity=0.076 Sum_probs=84.0
Q ss_pred ccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhH
Q 011081 244 RPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPD----CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVA 319 (494)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 319 (494)
..+...|..+...+.+.|++++|...|++..+. .|+ ...+..+...|...|++++|...++...+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 346788888889999999999999999988875 455 5677778888888888888888888877653 335677
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011081 320 YNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHL 358 (494)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 358 (494)
|..+..+|...|++++|...|++..+.. +.+...+..+
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 139 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEAL 139 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHH
Confidence 7888888888888888888888877653 3334444333
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.28 E-value=1e-05 Score=61.16 Aligned_cols=100 Identities=8% Similarity=-0.005 Sum_probs=88.2
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--CHHHHHHH
Q 011081 281 DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVES--SSVTFEHL 358 (494)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~l 358 (494)
+...+..+...+.+.|++++|...++...+.. +.+...|..+...|...|++++|.+.|++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 45567788889999999999999999998764 4577889999999999999999999999998874 44 68889999
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHCC
Q 011081 359 VNGYCRA-GDVDSAILVYNDMCRKG 382 (494)
Q Consensus 359 i~~~~~~-g~~~~a~~~~~~m~~~~ 382 (494)
...+... |++++|.+.++...+..
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 9999999 99999999999998865
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.28 E-value=2.2e-05 Score=62.04 Aligned_cols=101 Identities=7% Similarity=-0.027 Sum_probs=90.0
Q ss_pred ccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHH
Q 011081 244 RPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTI 323 (494)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 323 (494)
..+...|..+...+.+.|++++|...|.+..+.. +.+...|..+...+...|++++|...++...+.. +.+...|..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 3478899999999999999999999999998875 4467889999999999999999999999998875 4478899999
Q ss_pred HHHHHccCCHHHHHHHHHHHHhC
Q 011081 324 IGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
..+|...|++++|...|++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 170
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.27 E-value=1.9e-05 Score=63.11 Aligned_cols=97 Identities=12% Similarity=0.018 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011081 283 YSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGY 362 (494)
Q Consensus 283 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 362 (494)
..+..+...+.+.|++++|...|+...... +.+...|..+..+|.+.|++++|+..|++....+ +.+...+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 344555556666666666666666666543 3355566666666666666666666666666553 34455566666666
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 011081 363 CRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 363 ~~~g~~~~a~~~~~~m~~~ 381 (494)
...|++++|...|+..++.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666553
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.27 E-value=8.2e-06 Score=63.66 Aligned_cols=113 Identities=12% Similarity=0.195 Sum_probs=87.8
Q ss_pred hHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 011081 196 VSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMAR 275 (494)
Q Consensus 196 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (494)
...+..+...+...|++++|...|++.....+. +...+..+...+...|++++|...+++..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-----------------NMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-----------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 355677888888899999999999988765432 678888899999999999999999998877
Q ss_pred cCC--CcC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 011081 276 LGC--EPD----CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGF 327 (494)
Q Consensus 276 ~g~--~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 327 (494)
... .++ ..++..+...+.+.|++++|.+.|+...+. .|+...+..+....
T Consensus 67 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 67 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred hccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 531 112 667888889999999999999999998876 35665555554443
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=5.6e-05 Score=60.34 Aligned_cols=115 Identities=10% Similarity=0.020 Sum_probs=77.2
Q ss_pred ChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011081 195 KVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMA 274 (494)
Q Consensus 195 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (494)
+...+..+...+...|++++|.+.|++.....+. ..-....|..+...|.+.|++++|+..+++..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 92 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT--------------PQDQAVLHRNRAACHLKLEDYDKAETEASKAI 92 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc--------------chHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4566677777777788888888888877664331 00015677777778888888888888888777
Q ss_pred HcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 275 RLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 275 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
+.. +.+...+..+..++...|++++|...|++..+.. +.+...+..+..
T Consensus 93 ~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (148)
T 2dba_A 93 EKD-GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRN 141 (148)
T ss_dssp HHT-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred hhC-ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Confidence 653 3356677777778888888888888888877653 223444443333
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.22 E-value=1.2e-05 Score=65.41 Aligned_cols=135 Identities=13% Similarity=0.096 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-cC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCE-PD----CYSYSVLMAVFCEERRMREAEKLWEEMRDK----NVEH- 315 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~- 315 (494)
...++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|.+.+++..+. +..+
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 3556778888888889999998888887654211 11 135667777778888888888888776542 1000
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 316 DVVAYNTIIGGFCEIGEMARAEEFFREMGLS----GVE-SSSVTFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
...++..+...|...|++++|.+.+++..+. +.. .....+..+...|...|++++|.+.+++..+
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 1345666667777777777777777665432 111 1123445555566666666666666665543
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.19 E-value=1.5e-05 Score=64.74 Aligned_cols=63 Identities=14% Similarity=0.032 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011081 425 SYMFLIKGLCEEGKMEEALKVQAEMVGK----GFEP-SLEIYSAFIDGYMKEGNVEMATMLRKEMFEN 487 (494)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 487 (494)
.+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4455556666666666666666665532 1111 1345556666777777777777777776654
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.15 E-value=2e-05 Score=60.99 Aligned_cols=94 Identities=9% Similarity=-0.035 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCE 329 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 329 (494)
+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..+|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3444555556666666666666655543 2245555555566666666666666666655543 2244555555566666
Q ss_pred cCCHHHHHHHHHHHHh
Q 011081 330 IGEMARAEEFFREMGL 345 (494)
Q Consensus 330 ~g~~~~A~~~~~~m~~ 345 (494)
.|++++|+..|++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666665554
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.12 E-value=2.8e-05 Score=60.15 Aligned_cols=97 Identities=9% Similarity=-0.040 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011081 284 SYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYC 363 (494)
Q Consensus 284 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 363 (494)
.+..+...+.+.|++++|...|+...+.. +.+...|..+..++...|++++|+..|++..+.. +-+...+..+...|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 35567778899999999999999998874 4578899999999999999999999999998875 557788999999999
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 011081 364 RAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 364 ~~g~~~~a~~~~~~m~~~~ 382 (494)
..|++++|...|++.++..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999998753
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.09 E-value=0.00016 Score=56.11 Aligned_cols=92 Identities=9% Similarity=0.151 Sum_probs=52.0
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCcCH---hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HhHHHHHHHH
Q 011081 253 LMVGFYREGAFEKVEDVWVEMARLGCEPDC---YSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD---VVAYNTIIGG 326 (494)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~ 326 (494)
+...+.+.|++++|...|++..+.. +.+. ..+..+..++.+.|++++|...|+...+.. +.+ ..++..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 4455556666666666666665542 1122 355555666666666666666666665542 112 4445555666
Q ss_pred HHccCCHHHHHHHHHHHHhC
Q 011081 327 FCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~ 346 (494)
|.+.|++++|...|+++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666554
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.07 E-value=1.3e-05 Score=78.56 Aligned_cols=124 Identities=7% Similarity=0.047 Sum_probs=98.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCE 329 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 329 (494)
|..+...+.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|.+.+++..+.. +.+..+|..+..+|.+
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3344456678899999999999998874 4457889999999999999999999999999874 4578899999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 011081 330 IGEMARAEEFFREMGLSGVESSSVTFEHLVNG--YCRAGDVDSAILVYN 376 (494)
Q Consensus 330 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 376 (494)
.|++++|++.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 87 ~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999998764 3344455555555 888899999999998
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.06 E-value=5.6e-05 Score=71.23 Aligned_cols=98 Identities=10% Similarity=0.030 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC--------------C-CcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLG--------------C-EPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK 311 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------------~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 311 (494)
...|..+...+.+.|++++|+..|++..+.- . +.+..+|..+..+|.+.|++++|++.+++..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 4457777888888888888888888876520 0 112233444444444444444444444444443
Q ss_pred CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011081 312 NVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGL 345 (494)
Q Consensus 312 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (494)
. +.+...|..+..+|.+.|++++|++.|++..+
T Consensus 303 ~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 303 D-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2 22334444444444444444444444444443
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.06 E-value=5.2e-05 Score=73.79 Aligned_cols=123 Identities=7% Similarity=-0.009 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC----------------HhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPD----------------CYSYSVLMAVFCEERRMREAEKLWEEMR 309 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~ 309 (494)
....|..+...|.+.|++++|+..|++..+.. |+ ...|..+..+|.+.|++++|+..+++.+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45667788888888889999988888887642 22 3555666666666666666666666665
Q ss_pred hCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011081 310 DKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAI 372 (494)
Q Consensus 310 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 372 (494)
+.. +.+...|..+..+|...|++++|+..|++..+.. +-+...+..+...+.+.++.+++.
T Consensus 345 ~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 345 GLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred hcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 543 3355566666666666666666666666665543 334445555555555555555544
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.04 E-value=1.2e-05 Score=78.83 Aligned_cols=122 Identities=13% Similarity=0.066 Sum_probs=98.1
Q ss_pred HHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc
Q 011081 201 ALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEP 280 (494)
Q Consensus 201 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 280 (494)
.+...+.+.|++++|.+.|+++.+..+. +..+|..+..+|.+.|++++|++.+++..+.. +.
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~-----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~ 72 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPS-----------------NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KK 72 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCc-----------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC
Confidence 3445567789999999999999876543 68999999999999999999999999999874 44
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH--HHccCCHHHHHHHHH
Q 011081 281 DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG--FCEIGEMARAEEFFR 341 (494)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 341 (494)
+..+|..+..+|.+.|++++|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 73 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 73 YIKGYYRRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 67889999999999999999999999998764 3345566666666 888899999999998
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.03 E-value=0.00014 Score=56.50 Aligned_cols=93 Identities=12% Similarity=0.061 Sum_probs=63.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---hHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 011081 287 VLMAVFCEERRMREAEKLWEEMRDKNVEHDV---VAYNTIIGGFCEIGEMARAEEFFREMGLSGVESS---SVTFEHLVN 360 (494)
Q Consensus 287 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~ 360 (494)
.+...+.+.|++++|...|+...+.. +.+. ..+..+..+|.+.|++++|...|++..+.. +.+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 35556677788888888887776653 1222 466677777777788888888877776653 222 455666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 011081 361 GYCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 361 ~~~~~g~~~~a~~~~~~m~~~ 381 (494)
++...|++++|...|+.+.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777777765
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.01 E-value=1.9e-05 Score=60.70 Aligned_cols=86 Identities=12% Similarity=0.028 Sum_probs=58.0
Q ss_pred cCCHhHHHHHHHHHHHcC--CCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHH
Q 011081 260 EGAFEKVEDVWVEMARLG--CEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAE 337 (494)
Q Consensus 260 ~g~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 337 (494)
.|++++|+..|++..+.+ -+-+...+..+...|.+.|++++|...|++..+.. +-+..++..+..+|.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 567777888887777653 12234566777777777888888888887777664 335667777777777778888887
Q ss_pred HHHHHHHhC
Q 011081 338 EFFREMGLS 346 (494)
Q Consensus 338 ~~~~~m~~~ 346 (494)
..|++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776654
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.01 E-value=8.2e-05 Score=72.40 Aligned_cols=145 Identities=9% Similarity=-0.013 Sum_probs=98.4
Q ss_pred CHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------HhHHHHHHHHH
Q 011081 262 AFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD--------------VVAYNTIIGGF 327 (494)
Q Consensus 262 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--------------~~~~~~li~~~ 327 (494)
++++|...|+...+.. .-....|..+...|.+.|++++|...|++..+...... ...|..+..+|
T Consensus 249 ~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555444332221 11345678888899999999999999999877531111 46777888888
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011081 328 CEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEAL 407 (494)
Q Consensus 328 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 407 (494)
.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++.++.. +-+...+..+...+...++.+++.
T Consensus 328 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888877764 4567777788888888888888888888877753 224456666666666666666655
Q ss_pred HH
Q 011081 408 DI 409 (494)
Q Consensus 408 ~~ 409 (494)
+.
T Consensus 406 ~~ 407 (457)
T 1kt0_A 406 RR 407 (457)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.01 E-value=1.3e-05 Score=61.55 Aligned_cols=84 Identities=11% Similarity=0.028 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHhCC--CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011081 296 RRMREAEKLWEEMRDKN--VEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAIL 373 (494)
Q Consensus 296 g~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 373 (494)
|++++|+..|++..+.+ -+.+..+|..+..+|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 44444444444444432 11123344444444444444444444444444432 2233444444444444444444444
Q ss_pred HHHHHHH
Q 011081 374 VYNDMCR 380 (494)
Q Consensus 374 ~~~~m~~ 380 (494)
.|++.++
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.00 E-value=0.00013 Score=59.63 Aligned_cols=100 Identities=12% Similarity=0.094 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc--------C---------CCcCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARL--------G---------CEPDCYSYSVLMAVFCEERRMREAEKLWEEM 308 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------g---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 308 (494)
....+......+.+.|++++|+..|.+..+. . -+.+...|..+..+|.+.|++++|...++..
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4567888888999999999999999988764 0 0112245555666666666666666666666
Q ss_pred HhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011081 309 RDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 309 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
++.. +.+...|..+..+|...|++++|...|++..+.
T Consensus 90 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 90 LKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 5543 334556666666666666666666666665554
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.97 E-value=7.4e-05 Score=70.37 Aligned_cols=138 Identities=7% Similarity=-0.005 Sum_probs=100.9
Q ss_pred HhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccccccc-ccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 011081 197 STCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRV-RPNVHTFNALMVGFYREGAFEKVEDVWVEMAR 275 (494)
Q Consensus 197 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (494)
..+..+...+.+.|++++|.+.|++++...+.... .....+.... .-+..+|+.+..+|.+.|++++|+..+++..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~--~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRA--AAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH--HSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCcc--ccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 34667778888899999999999888652110000 0000000001 22578899999999999999999999999998
Q ss_pred cCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHH
Q 011081 276 LGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEE 338 (494)
Q Consensus 276 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 338 (494)
.. +.+...|..+..+|...|++++|.+.|++..+.. +.+...+..+...+.+.++.+++.+
T Consensus 302 ~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 302 ID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 3467789999999999999999999999998874 3467777888888877777776654
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.96 E-value=0.00012 Score=59.72 Aligned_cols=100 Identities=14% Similarity=0.118 Sum_probs=77.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------C---------CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011081 282 CYSYSVLMAVFCEERRMREAEKLWEEMRDK--------N---------VEHDVVAYNTIIGGFCEIGEMARAEEFFREMG 344 (494)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------g---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 344 (494)
...+......+.+.|++++|...|...... . -+.+...|..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345677788899999999999999987764 0 02234577788888888888888888888887
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011081 345 LSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 345 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 382 (494)
+.+ +.+...|..+..+|...|++++|...|+..++..
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 764 5567788888888888888888888888887753
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.90 E-value=3.7e-05 Score=71.57 Aligned_cols=148 Identities=9% Similarity=-0.009 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
....|..+...+.+.|++++|+..|++..+. .|+... +...++.+++...+ . ...|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHH
Confidence 4566778888888999999999999988765 344331 11222223322211 1 125666667
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHhcCCHH
Q 011081 326 GFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGE-LCDKRRVF 404 (494)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~ 404 (494)
+|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...|+..++... -+...+..+... ....+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766653 34566667777777777777777777777655421 122333333333 22334555
Q ss_pred HHHHHHHHHH
Q 011081 405 EALDILKARV 414 (494)
Q Consensus 405 ~a~~~~~~~~ 414 (494)
++...|..++
T Consensus 317 ~a~~~~~~~l 326 (338)
T 2if4_A 317 KQKEMYKGIF 326 (338)
T ss_dssp ----------
T ss_pred HHHHHHHHhh
Confidence 5666665444
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.89 E-value=0.00037 Score=69.50 Aligned_cols=173 Identities=8% Similarity=0.013 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCC----------hhHHHHHHHHHhcCCcccccccccccccccccccC
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKG----------VISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPN 246 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 246 (494)
-++|++.++.+.....+ +..+|+.--.++...|+ ++++++.++.+...++. +
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-----------------~ 106 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-----------------S 106 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-----------------C
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-----------------C
Confidence 67889999999986654 56778877777766666 89999999999887654 8
Q ss_pred HHHHHHHHHHHHhcC--CHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHhHHHHH
Q 011081 247 VHTFNALMVGFYREG--AFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEER-RMREAEKLWEEMRDKNVEHDVVAYNTI 323 (494)
Q Consensus 247 ~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~l 323 (494)
..+|+.-...+.+.| +++++++.++++.+.. +-|..+|+.-...+.+.| .++++.+.++++.+.. +-|..+|+..
T Consensus 107 y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r 184 (567)
T 1dce_A 107 YGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYR 184 (567)
T ss_dssp HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHH
Confidence 899999888889999 7799999999999986 557888988888888888 8999999999998875 4588888888
Q ss_pred HHHHHcc--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011081 324 IGGFCEI--------------GEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDS 370 (494)
Q Consensus 324 i~~~~~~--------------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 370 (494)
...+.+. +.++++++.+++..... +-|...|+-+-..+.+.++.++
T Consensus 185 ~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 8777663 55789999999888765 5677888888887777776444
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.85 E-value=0.0011 Score=66.15 Aligned_cols=173 Identities=8% Similarity=-0.069 Sum_probs=140.3
Q ss_pred CChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCC----------HhHHHHHHHHHHHcCCC
Q 011081 210 KGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGA----------FEKVEDVWVEMARLGCE 279 (494)
Q Consensus 210 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~ 279 (494)
...++|++.+++++..+|. +..+|+.--..+.+.|+ ++++++.++.+.+.. +
T Consensus 43 ~~~eeal~~~~~~l~~nP~-----------------~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-p 104 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-----------------FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-P 104 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-T
T ss_pred CCCHHHHHHHHHHHHHCch-----------------hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-C
Confidence 3456889999999887665 77888887777777777 899999999999876 4
Q ss_pred cCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHHHHH
Q 011081 280 PDCYSYSVLMAVFCEER--RMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIG-EMARAEEFFREMGLSGVESSSVTFE 356 (494)
Q Consensus 280 p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~ 356 (494)
-+..+|+.-.-.+.+.+ +++++++.++.+.+.. +-|..+|+.-...+.+.| .++++++.++++.+.. +-|...|+
T Consensus 105 K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~ 182 (567)
T 1dce_A 105 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWH 182 (567)
T ss_dssp TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHH
T ss_pred CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHH
Confidence 57778888888888889 7799999999999876 558889998888888888 8999999999998876 66888898
Q ss_pred HHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 011081 357 HLVNGYCRA--------------GDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRV 403 (494)
Q Consensus 357 ~li~~~~~~--------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 403 (494)
.....+.+. +.++++++.+++.+... +-|...|+.+-..+.+.++.
T Consensus 183 ~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 887777663 55789999999988865 33667777777767666653
No 192
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.83 E-value=0.0002 Score=56.76 Aligned_cols=111 Identities=12% Similarity=0.080 Sum_probs=81.5
Q ss_pred CCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc----cCCHHHH
Q 011081 261 GAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCE----IGEMARA 336 (494)
Q Consensus 261 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A 336 (494)
+++++|+++|++..+.| .++.. |...|...+..++|.++|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45677888888887776 33332 6666667777778888888887765 67777777777777 6788888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 011081 337 EEFFREMGLSGVESSSVTFEHLVNGYCR----AGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 337 ~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 382 (494)
.+.|++..+.| +...+..|...|.. .++.++|...|+...+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888887765 45666677777777 778888888888877776
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.83 E-value=0.00029 Score=56.53 Aligned_cols=61 Identities=5% Similarity=-0.031 Sum_probs=39.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC-------CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLS-------GVESSSVTF----EHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
.|+.+..++.+.|++++|+..|++..+. . +-+...| .....++...|++++|+..|+..++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5666666666666666666666666553 2 2344556 6677777777777777777777665
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.80 E-value=0.00034 Score=56.10 Aligned_cols=98 Identities=10% Similarity=0.020 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC--------H-----hHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPD--------C-----YSYSVLMAVFCEERRMREAEKLWEEMRDK- 311 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--------~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 311 (494)
....+......+.+.|++++|+..|++.++. .|+ . ..|..+..++.+.|++++|+..++..++.
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 3455677788899999999999999998876 343 2 38999999999999999999999998875
Q ss_pred ------CCCCCHhHH----HHHHHHHHccCCHHHHHHHHHHHHhC
Q 011081 312 ------NVEHDVVAY----NTIIGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 312 ------g~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
. +-+...| .....++...|++++|+..|++..+.
T Consensus 88 n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 88 NRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3 3356678 89999999999999999999998653
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.77 E-value=9.3e-05 Score=68.84 Aligned_cols=149 Identities=11% Similarity=0.028 Sum_probs=78.7
Q ss_pred hHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 011081 196 VSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMAR 275 (494)
Q Consensus 196 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (494)
...+..+...+.+.|++++|...|++++...+ +... +...|+.+++...+ .
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p------------------~~~~-------~~~~~~~~~~~~~l---~- 229 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG------------------DDFM-------FQLYGKYQDMALAV---K- 229 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSC------------------HHHH-------HTCCHHHHHHHHHH---H-
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc------------------cchh-------hhhcccHHHHHHHH---H-
Confidence 34466777888899999999999999866432 3221 12223333333222 1
Q ss_pred cCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011081 276 LGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTF 355 (494)
Q Consensus 276 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 355 (494)
...|..+..+|.+.|++++|...++..++.. +.+...|..+..+|...|++++|...|++..+.. +-+...+
T Consensus 230 ------~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~ 301 (338)
T 2if4_A 230 ------NPCHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIR 301 (338)
T ss_dssp ------THHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------
T ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHH
Confidence 1366777778888888888888888877653 3467778888888888888888888888876653 2234444
Q ss_pred HHHHHH-HHhcCCHHHHHHHHHHHHHC
Q 011081 356 EHLVNG-YCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 356 ~~li~~-~~~~g~~~~a~~~~~~m~~~ 381 (494)
..+... ....+..+++..+|..|...
T Consensus 302 ~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 302 RELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 444444 23445667777788777654
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.77 E-value=0.00011 Score=71.47 Aligned_cols=124 Identities=12% Similarity=-0.021 Sum_probs=70.4
Q ss_pred HHhcCCHhHHHHHHHHHHHcC---CCc----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CC-CHhHHHH
Q 011081 257 FYREGAFEKVEDVWVEMARLG---CEP----DCYSYSVLMAVFCEERRMREAEKLWEEMRDK-----NV-EH-DVVAYNT 322 (494)
Q Consensus 257 ~~~~g~~~~a~~~~~~m~~~g---~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~~-~~~~~~~ 322 (494)
+...|++++|+.++++.++.. +.+ ...+++.|...|...|++++|..++++.++. |. .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 445677777777776665431 111 1345667777777777777777777665431 21 11 2345666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhC-----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 323 IIGGFCEIGEMARAEEFFREMGLS-----GV-ESS-SVTFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 323 li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
|...|...|++++|+.+|++..+. |- .|+ ..+.+.+-.++...+.+++|+.+|..+.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777766665431 21 111 22334444555566666666666666654
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.63 E-value=0.0024 Score=50.35 Aligned_cols=109 Identities=10% Similarity=0.033 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHH
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVG 256 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 256 (494)
.++|++.|++..+.|. +.. . |...|...+.+++|.+.|++..+.+ +...+..|...
T Consensus 11 ~~~A~~~~~~aa~~g~-~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g-------------------~~~a~~~Lg~~ 66 (138)
T 1klx_A 11 LKKAIQYYVKACELNE-MFG--C--LSLVSNSQINKQKLFQYLSKACELN-------------------SGNGCRFLGDF 66 (138)
T ss_dssp HHHHHHHHHHHHHTTC-TTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT-------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCC-Hhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC-------------------CHHHHHHHHHH
Confidence 6777777777777662 222 2 5556666666677777777765532 55666666666
Q ss_pred HHh----cCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 011081 257 FYR----EGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCE----ERRMREAEKLWEEMRDKN 312 (494)
Q Consensus 257 ~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 312 (494)
|.. .+++++|+++|++..+.| +...+..|...|.. .+++++|.++|+...+.|
T Consensus 67 y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 67 YENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 666 567777777777766654 44556666666666 566666666666666654
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.62 E-value=0.00034 Score=68.09 Aligned_cols=125 Identities=8% Similarity=-0.085 Sum_probs=74.3
Q ss_pred HHccCCHHHHHHHHHHHHhC-----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCC-hhhHHH
Q 011081 327 FCEIGEMARAEEFFREMGLS-----GV-ES-SSVTFEHLVNGYCRAGDVDSAILVYNDMCR-----KGF-EPE-GSTIEV 392 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~-----~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~-~p~-~~~~~~ 392 (494)
+...|++++|+.++++.++. |- .| ...+++.|...|...|++++|..++++.++ .|. .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44667777777777665442 10 11 234567777777777777777777776654 121 222 345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHh----CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 393 LIGELCDKRRVFEALDILKARVVK----FGL-FPT-EKSYMFLIKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 393 li~~~~~~~~~~~a~~~~~~~~~~----~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (494)
|...|...|++++|..++++.+.- .|- .|+ ..+.+.+-.++...|.+++|..+|.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776654421 121 122 22344555666677777788777777765
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.62 E-value=9.9e-05 Score=55.58 Aligned_cols=60 Identities=13% Similarity=0.160 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011081 285 YSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGL 345 (494)
Q Consensus 285 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (494)
+..+...+.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|++.|++..+
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3344444444444444444444444332 22334444444444444444444444444443
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.61 E-value=5.7e-05 Score=56.96 Aligned_cols=93 Identities=5% Similarity=0.016 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------Hh
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD-------VV 318 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-------~~ 318 (494)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|.+.+++..+.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 56788899999999999999999999998874 4467889999999999999999999999998873 44 44
Q ss_pred HHHHHHHHHHccCCHHHHHHHHH
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFR 341 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~ 341 (494)
.+..+..++...|+.+.|...|+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 55566666666666555554443
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.60 E-value=0.00066 Score=51.50 Aligned_cols=64 Identities=11% Similarity=0.043 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRD 310 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 310 (494)
+...|..+...|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...|+...+
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555666666666666666666666655543 22344555555555566666666655555543
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.59 E-value=0.00035 Score=53.12 Aligned_cols=78 Identities=15% Similarity=0.086 Sum_probs=43.6
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 301 AEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 301 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
|...|++..+.. +.+...|..+...|...|++++|+..|++..+.. +.+...|..+...|...|++++|...|+...+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555442 2345555566666666666666666666655543 33445555555566666666666666655544
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.51 E-value=0.0011 Score=47.48 Aligned_cols=63 Identities=11% Similarity=0.302 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRD 310 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 310 (494)
...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|...+++..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3444444445555555555555555544432 22333444444444444444444444444443
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.50 E-value=0.0013 Score=47.05 Aligned_cols=84 Identities=12% Similarity=0.210 Sum_probs=69.9
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011081 281 DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVN 360 (494)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 360 (494)
+...+..+...+.+.|++++|...|++..+.. +.+..++..+..+|.+.|++++|...|++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34677888899999999999999999998764 4467889999999999999999999999998864 456777777777
Q ss_pred HHHhcC
Q 011081 361 GYCRAG 366 (494)
Q Consensus 361 ~~~~~g 366 (494)
.+...|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 776543
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.36 E-value=0.00056 Score=54.74 Aligned_cols=108 Identities=9% Similarity=0.035 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCCh----------hHHHHHHHHHhcCCcccccccccccccccccccC
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGV----------ISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPN 246 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 246 (494)
+++|++.++...+.... +...|+.+..++...+++ ++|...|++.++.+|. +
T Consensus 18 feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-----------------~ 79 (158)
T 1zu2_A 18 FEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-----------------K 79 (158)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-----------------C
T ss_pred HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-----------------c
Confidence 89999999999987654 788888888888887764 5999999999887654 7
Q ss_pred HHHHHHHHHHHHhcC-----------CHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 247 VHTFNALMVGFYREG-----------AFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRD 310 (494)
Q Consensus 247 ~~~~~~li~~~~~~g-----------~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 310 (494)
..+|..+..+|...| ++++|++.|++..+. .|+...|...+... ++|-+++-.+..
T Consensus 80 ~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~------~ka~el~~~~~~ 146 (158)
T 1zu2_A 80 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYK 146 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH------HhCHhccCcccc
Confidence 889999999998875 789999999988876 67766665555443 334444444443
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.35 E-value=0.00053 Score=54.90 Aligned_cols=98 Identities=7% Similarity=-0.008 Sum_probs=69.4
Q ss_pred cCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHh----------HHHHHHHHHHHcC
Q 011081 208 RGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFE----------KVEDVWVEMARLG 277 (494)
Q Consensus 208 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----------~a~~~~~~m~~~g 277 (494)
+.+.+++|.+.++...+.+|. +...|+.+..++.+.++++ +|+..|++.++..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-----------------~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld 76 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-----------------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID 76 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhHHHHHHHHHHHHHHHCCC-----------------CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC
Confidence 445678999999999887654 8899999999999888765 7777777777764
Q ss_pred CCcCHhHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 278 CEPDCYSYSVLMAVFCEER-----------RMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 278 ~~p~~~~~~~li~~~~~~g-----------~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
+-+..+|..+..+|...| ++++|.+.|++..+. .|+...|..-+.
T Consensus 77 -P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 77 -PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred -cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 335567777777777664 677777777776665 455444433333
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.24 E-value=0.0018 Score=47.69 Aligned_cols=64 Identities=22% Similarity=0.196 Sum_probs=36.7
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 316 DVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
+...+..+..+|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555556666666666666666666655543 33444555566666666666666666655543
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.18 E-value=0.002 Score=47.49 Aligned_cols=64 Identities=14% Similarity=0.117 Sum_probs=42.2
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011081 281 DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGL 345 (494)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (494)
+...+..+...|.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566666667777777777777777766653 33455666777777777777777777766553
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.14 E-value=0.023 Score=52.21 Aligned_cols=155 Identities=6% Similarity=-0.072 Sum_probs=80.7
Q ss_pred cCCChhhHHHHHHHHH--hcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccc
Q 011081 154 CGSAPFVFDLLIKCCL--EVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATA 231 (494)
Q Consensus 154 ~~~~~~~~~~li~~~~--~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 231 (494)
...++.+|...+++.. ..++.+...+|+++|++.++..+. ....|..+..+|.- .... .
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~----------~~~~-~------- 250 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIV----------RHSQ-H------- 250 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH----------HHHH-S-------
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH----------Hhcc-C-------
Confidence 4456788888886654 344555578999999999985433 34555544444430 0000 0
Q ss_pred ccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 232 GIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK 311 (494)
Q Consensus 232 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 311 (494)
..+...... ...+.+-...+ .. -+.+..+|..+...+...|++++|...+++....
T Consensus 251 ------------~~~~~~~~~----------l~~a~~a~~a~-~~-~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L 306 (372)
T 3ly7_A 251 ------------PLDEKQLAA----------LNTEIDNIVTL-PE-LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL 306 (372)
T ss_dssp ------------CCCHHHHHH----------HHHHHHHHHTC-GG-GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------------CCchhhHHH----------HHHHHHHHHhc-cc-CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 000000000 01122211111 11 1345555555555555556666666666666665
Q ss_pred CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011081 312 NVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTF 355 (494)
Q Consensus 312 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 355 (494)
+ |+...|..+...+.-.|++++|.+.|++.... .|...+|
T Consensus 307 n--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 307 E--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp C--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 3 55555555666666666666666666666554 3444444
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.05 E-value=0.039 Score=57.66 Aligned_cols=76 Identities=8% Similarity=0.014 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcc
Q 011081 251 NALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEI 330 (494)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 330 (494)
..++..+.+.|.+++|+++.+.-. .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 566666666677776665552111 1122345567777776664332 2556677777777777
Q ss_pred CCHHHHHHHHHHHH
Q 011081 331 GEMARAEEFFREMG 344 (494)
Q Consensus 331 g~~~~A~~~~~~m~ 344 (494)
|+++.|++.|.++.
T Consensus 695 ~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 695 FNFKLAIEAFTNAH 708 (814)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcc
Confidence 77777777776653
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.05 E-value=0.014 Score=53.77 Aligned_cols=153 Identities=10% Similarity=-0.032 Sum_probs=101.9
Q ss_pred CCcChHhHHHHHHHHHc--C---CChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHH
Q 011081 192 LSVKVSTCNALIWEVSR--G---KGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKV 266 (494)
Q Consensus 192 ~~~~~~~~~~ll~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 266 (494)
.+.+...|...+++... . ....+|..+|+++++.+|. ....|..+.-+|.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-----------------~a~A~A~la~a~~-------- 244 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-----------------FTYARAEKALVDI-------- 244 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHH--------
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHH--------
Confidence 34577788887766432 2 2357899999999887665 5566665555554
Q ss_pred HHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011081 267 EDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 267 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
.. ...+ ..+...... ...+.+....+ .. .+.+..+|.++...+...|++++|...++++...
T Consensus 245 --~~---~~~~-~~~~~~~~~----------l~~a~~a~~a~-~~-~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L 306 (372)
T 3ly7_A 245 --VR---HSQH-PLDEKQLAA----------LNTEIDNIVTL-PE-LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL 306 (372)
T ss_dssp --HH---HHHS-CCCHHHHHH----------HHHHHHHHHTC-GG-GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --HH---hccC-CCchhhHHH----------HHHHHHHHHhc-cc-CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 11 1111 011111011 12222211111 11 2567888888888888889999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 011081 347 GVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIE 391 (494)
Q Consensus 347 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 391 (494)
+ |+...|..+...+...|++++|.+.|++.... .|...+|.
T Consensus 307 n--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 307 E--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp C--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 5 78888888889999999999999999999886 45666654
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.67 E-value=0.0045 Score=59.17 Aligned_cols=63 Identities=6% Similarity=-0.053 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHhC-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 318 VAYNTIIGGFCEIGEMARAEEFFREMGLS-----G-VES-SSVTFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
.+++.|..+|...|++++|+.++++..+. | -.| ...+++.|...|...|++++|+.+|++.++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 45566666666666666666666655431 2 112 224456666666666666666666665544
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.65 E-value=0.0095 Score=56.95 Aligned_cols=92 Identities=7% Similarity=0.014 Sum_probs=57.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC---CCC----CHhHHHHHHHHHHccCCHHHHHHHHHHHHhC-----C-CCC-CHHH
Q 011081 289 MAVFCEERRMREAEKLWEEMRDKN---VEH----DVVAYNTIIGGFCEIGEMARAEEFFREMGLS-----G-VES-SSVT 354 (494)
Q Consensus 289 i~~~~~~g~~~~a~~~~~~m~~~g---~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~~-~~~~ 354 (494)
+..+.+.|++++|+.++++..+.. +.+ ...+++.+...|...|++++|+.++++..+. | ..| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334556677777777777665421 112 2346777777777777777777777765432 2 112 2345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 355 FEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 355 ~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
++.|...|...|++++|+.++++.++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 67777777777777777777776654
No 214
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.63 E-value=0.13 Score=53.63 Aligned_cols=154 Identities=10% Similarity=0.102 Sum_probs=96.9
Q ss_pred HHHHhcCChhcHHHHHH-HHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccc
Q 011081 166 KCCLEVKNIEKIETCVD-IVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVR 244 (494)
Q Consensus 166 ~~~~~~~~~~~~~~a~~-~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (494)
......++ +++|.+ ++.. ++ +......++..+.+.|..+.|+++.+..
T Consensus 607 ~~~~~~~~---~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~---------------------- 655 (814)
T 3mkq_A 607 QTLTLRGE---IEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPDQ---------------------- 655 (814)
T ss_dssp HHHHHTTC---HHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCCH----------------------
T ss_pred hHHHHhCC---HHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCCc----------------------
Confidence 33445677 788776 4421 11 1223367778888888888888654211
Q ss_pred cCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHH
Q 011081 245 PNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTII 324 (494)
Q Consensus 245 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 324 (494)
. .-.....+.|++++|.++.+.+ .+...|..+...+.+.++++.|++.|..+.. |..+.
T Consensus 656 -~-----~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~ 714 (814)
T 3mkq_A 656 -D-----QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLF 714 (814)
T ss_dssp -H-----HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHH
T ss_pred -c-----hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhH
Confidence 1 1123456789999999986543 3678999999999999999999999998753 34555
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 325 GGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYND 377 (494)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 377 (494)
..|...|+.+...++-+.....|. ++....+|.+.|++++|.+++.+
T Consensus 715 ~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 715 LLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 556667777666555555444431 23333344455555555555443
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.62 E-value=0.0045 Score=59.13 Aligned_cols=85 Identities=9% Similarity=-0.102 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCC-hhhHHHHHHH
Q 011081 331 GEMARAEEFFREMGLS---GVES----SSVTFEHLVNGYCRAGDVDSAILVYNDMCR-----KGF-EPE-GSTIEVLIGE 396 (494)
Q Consensus 331 g~~~~A~~~~~~m~~~---~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~-~p~-~~~~~~li~~ 396 (494)
|++++|+.++++..+. -+.| ...+++.|...|...|++++|+.++++.++ .|. .|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 6788888888876542 1112 246788899999999999999999988765 232 333 4568888999
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 011081 397 LCDKRRVFEALDILKARVV 415 (494)
Q Consensus 397 ~~~~~~~~~a~~~~~~~~~ 415 (494)
|...|++++|..++++.+.
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 9999999999999887654
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.59 E-value=0.0056 Score=44.63 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=21.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHh-HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011081 292 FCEERRMREAEKLWEEMRDKNVEHDVV-AYNTIIGGFCEIGEMARAEEFFREMGL 345 (494)
Q Consensus 292 ~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (494)
+.+.|++++|...|+...+.. +.+.. .|..+..+|...|++++|.+.|++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334444444444444443331 11233 444444444444444444444444443
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.58 E-value=0.0073 Score=57.77 Aligned_cols=87 Identities=8% Similarity=0.003 Sum_probs=63.3
Q ss_pred ccCCHHHHHHHHHHHHhCC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCC-hhhHHHHH
Q 011081 329 EIGEMARAEEFFREMGLSG---VES----SSVTFEHLVNGYCRAGDVDSAILVYNDMCR-----KG-FEPE-GSTIEVLI 394 (494)
Q Consensus 329 ~~g~~~~A~~~~~~m~~~~---~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~-~~p~-~~~~~~li 394 (494)
+.|++++|+.++++..+.. +.| ...+++.+...|...|++++|+.++++.++ .| -.|+ ..+++.|.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 5678888888888886531 122 245778888888889999999888887765 22 1233 45678888
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 011081 395 GELCDKRRVFEALDILKARVV 415 (494)
Q Consensus 395 ~~~~~~~~~~~a~~~~~~~~~ 415 (494)
..|...|++++|+.++++.+.
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHH
Confidence 888899999998888886553
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.50 E-value=0.0091 Score=43.43 Aligned_cols=81 Identities=9% Similarity=0.085 Sum_probs=60.2
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCcCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC
Q 011081 253 LMVGFYREGAFEKVEDVWVEMARLGCEPDCY-SYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIG 331 (494)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 331 (494)
....+.+.|++++|+..|++..+.. +.+.. .+..+..+|...|++++|.+.|++..+.. +.+..++.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH--------H
Confidence 4567788999999999999998874 33566 88899999999999999999999998874 223333311 4
Q ss_pred CHHHHHHHHHHH
Q 011081 332 EMARAEEFFREM 343 (494)
Q Consensus 332 ~~~~A~~~~~~m 343 (494)
.+.++...|++.
T Consensus 76 ~~~~a~~~~~~~ 87 (99)
T 2kc7_A 76 MVMDILNFYNKD 87 (99)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHHH
Confidence 455555555543
No 219
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.36 E-value=0.22 Score=37.94 Aligned_cols=140 Identities=14% Similarity=0.068 Sum_probs=98.5
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011081 328 CEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEAL 407 (494)
Q Consensus 328 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 407 (494)
.-.|..++..++..+.... .+..-||.+|--....-+-+-..++++..-+. .|. ...|++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHH
Confidence 3467788888888887753 35566777776666666666566666555332 222 2355555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011081 408 DILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFEN 487 (494)
Q Consensus 408 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 487 (494)
..+-. + ..+...+...++.+...|+-+.-.+++..+.. .-+|++...-.+..||.+.|+..+|.+++++.-++
T Consensus 82 ~C~~~-~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 82 ECGVI-N-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHH-T-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHH-h-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 55431 1 13555677788888999999999999999654 35788888889999999999999999999999998
Q ss_pred ccc
Q 011081 488 QVR 490 (494)
Q Consensus 488 ~~~ 490 (494)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 875
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.14 E-value=0.044 Score=43.25 Aligned_cols=85 Identities=16% Similarity=0.081 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 011081 368 VDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKR---RVFEALDILKARVVKFGLFP--TEKSYMFLIKGLCEEGKMEEA 442 (494)
Q Consensus 368 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A 442 (494)
...+.+-|.+..+.|. ++..+...+..++++.+ ++++++.++++.++.. .| +...+-.+.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHH
Confidence 4455555665555553 45556556666666666 4556777776555542 12 123333445556677777777
Q ss_pred HHHHHHHHhCCCCCC
Q 011081 443 LKVQAEMVGKGFEPS 457 (494)
Q Consensus 443 ~~~~~~m~~~~~~p~ 457 (494)
.+.++.+++. .|+
T Consensus 91 ~~y~~~lL~i--eP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHHHHH--CTT
T ss_pred HHHHHHHHhc--CCC
Confidence 7777777643 554
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.97 E-value=0.29 Score=43.16 Aligned_cols=93 Identities=12% Similarity=0.096 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhCCCCCC---HhHHHHHHHHHHc-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCH
Q 011081 298 MREAEKLWEEMRDKNVEHD---VVAYNTIIGGFCE-----IGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRA-GDV 368 (494)
Q Consensus 298 ~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~ 368 (494)
...|...+++..+. .|+ ...|..+...|.+ .|+.++|.+.|++..+.+-.-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 35666667776665 344 5678888888887 488888888888888764212366677777777774 888
Q ss_pred HHHHHHHHHHHHCCCC--CChhhHHH
Q 011081 369 DSAILVYNDMCRKGFE--PEGSTIEV 392 (494)
Q Consensus 369 ~~a~~~~~~m~~~~~~--p~~~~~~~ 392 (494)
+++.+.+++.+..... |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 8888888888887665 55444433
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.87 E-value=0.07 Score=38.38 Aligned_cols=65 Identities=11% Similarity=0.075 Sum_probs=33.4
Q ss_pred ChHhHHHHHHHHHcCCC---hhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 011081 195 KVSTCNALIWEVSRGKG---VISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWV 271 (494)
Q Consensus 195 ~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 271 (494)
++..+..+..++...++ .++|..++++.+..++. +..+...+...+.+.|++++|+..|+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-----------------~~rA~~~lg~~~~~~g~y~~Ai~~w~ 67 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-----------------NEAALSLIANDHFISFRFQEAIDTWV 67 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33444444444432222 45555555555554433 45555555555555666666666665
Q ss_pred HHHHc
Q 011081 272 EMARL 276 (494)
Q Consensus 272 ~m~~~ 276 (494)
++.+.
T Consensus 68 ~~l~~ 72 (93)
T 3bee_A 68 LLLDS 72 (93)
T ss_dssp HHHTC
T ss_pred HHHhh
Confidence 55554
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.86 E-value=0.13 Score=37.00 Aligned_cols=67 Identities=4% Similarity=-0.058 Sum_probs=39.4
Q ss_pred CCHhHHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011081 315 HDVVAYNTIIGGFCEIGE---MARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 315 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 382 (494)
.|...+..+..++...++ .++|..+|++..+.+ +-+......+...+.+.|++++|...|+.+++.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 345555555555543333 466666666666654 4455566666666666666666666666666553
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.84 Score=36.96 Aligned_cols=129 Identities=9% Similarity=0.062 Sum_probs=79.0
Q ss_pred HHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHh
Q 011081 204 WEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCY 283 (494)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 283 (494)
......|+++.|.++.+++ -+...|..|.....+.|+++-|++.|....+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l----------------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------- 62 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL----------------------NDSITWERLIQEALAQGNASLAEMIYQTQHS-------- 62 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH----------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------
T ss_pred HHHHhcCCHHHHHHHHHHh----------------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------
Confidence 3445677888887776665 1567788888888888888888888876642
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011081 284 SYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYC 363 (494)
Q Consensus 284 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 363 (494)
+..+.-.|.-.|+.++-.++-+.....| -++.-...+.-.|+++++.++|.+... -| -......
T Consensus 63 -~~~L~~Ly~~tg~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~------eA~~~A~ 126 (177)
T 3mkq_B 63 -FDKLSFLYLVTGDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LP------LAYAVAK 126 (177)
T ss_dssp -HHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HH------HHHHHHH
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hH------HHHHHHH
Confidence 2344555666777776666555555444 245555566667788887777754421 11 1111222
Q ss_pred hcCCHHHHHHHHHHH
Q 011081 364 RAGDVDSAILVYNDM 378 (494)
Q Consensus 364 ~~g~~~~a~~~~~~m 378 (494)
..|..+.|.++.+++
T Consensus 127 t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 127 ANGDEAAASAFLEQA 141 (177)
T ss_dssp HTTCHHHHHHHHHHT
T ss_pred HcCcHHHHHHHHHHh
Confidence 345666677776654
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.42 E-value=0.15 Score=37.41 Aligned_cols=60 Identities=13% Similarity=0.039 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011081 286 SVLMAVFCEERRMREAEKLWEEMRDKN------VEHDVVAYNTIIGGFCEIGEMARAEEFFREMGL 345 (494)
Q Consensus 286 ~~li~~~~~~g~~~~a~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (494)
..|...+.+.|+++.|..+|+...+.- -.....++..+..+|.+.|+++.|..++++..+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 344444444444444444444433210 012233444444444445555555544444443
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.41 E-value=0.11 Score=38.20 Aligned_cols=71 Identities=8% Similarity=0.128 Sum_probs=53.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011081 386 EGSTIEVLIGELCDKRRVFEALDILKARVVKF-----GLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSL 458 (494)
Q Consensus 386 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 458 (494)
+..-+..+...+.+.+++..|...|+..+... .-.+....+..+..++.+.|++++|..++++..+. .|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCC
Confidence 44456677888888999999999998777643 11245667888888999999999999999988864 5553
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.41 E-value=0.64 Score=35.51 Aligned_cols=132 Identities=11% Similarity=0.080 Sum_probs=64.4
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHH
Q 011081 258 YREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAE 337 (494)
Q Consensus 258 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 337 (494)
.-.|..++..++..+..... +..-||-+|.-....-+-+...++++.+-+. .|. ..+|+.....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHH
Confidence 34577888888888877642 5566666666666666666666666555332 111 1123333333
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011081 338 EFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILK 411 (494)
Q Consensus 338 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 411 (494)
..+-.+ ..+.......++.....|.-++-.+++.++... .+|+......+..+|.+.|+..+|.+++.
T Consensus 82 ~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 82 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 332222 112233333444444445555554554443322 23444444444455555555555555444
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.32 E-value=0.086 Score=41.10 Aligned_cols=33 Identities=9% Similarity=0.045 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHC
Q 011081 349 ESSSVTFEHLVNGYCRAGDV------DSAILVYNDMCRK 381 (494)
Q Consensus 349 ~~~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~ 381 (494)
+-|..+|-..+....+.|+. ++..++|++....
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~ 48 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA 48 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc
Confidence 44566666666666666776 6666666666553
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.31 E-value=0.24 Score=39.01 Aligned_cols=87 Identities=21% Similarity=0.223 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCC---ChhHHHHHHHHHhcCC-cccccccccccccccccccCHHHHHH
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGK---GVISGYEIYREVFGLD-SDATAGIGKDVKRVVRVRPNVHTFNA 252 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~ 252 (494)
+..+.+-|.+..+.|. ++..+.-.+..++++.+ +++++..+|++..+.+ |. -+...+-.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~----------------~~rd~lY~ 76 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE----------------EQRDYVFY 76 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH----------------HHHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc----------------chHHHHHH
Confidence 5566666666666665 58888888888999988 6679999999887643 21 13556666
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCcCH
Q 011081 253 LMVGFYREGAFEKVEDVWVEMARLGCEPDC 282 (494)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 282 (494)
+.-+|.+.|++++|.++++.+.+. .|+.
T Consensus 77 LAv~~~kl~~Y~~A~~y~~~lL~i--eP~n 104 (152)
T 1pc2_A 77 LAVGNYRLKEYEKALKYVRGLLQT--EPQN 104 (152)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHhc--CCCC
Confidence 777889999999999999999886 5644
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.24 E-value=0.97 Score=36.60 Aligned_cols=99 Identities=16% Similarity=0.155 Sum_probs=54.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011081 292 FCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSA 371 (494)
Q Consensus 292 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 371 (494)
....|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.|...|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34566666666665544 1455666666666666666666666665532 23344445555665555
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011081 372 ILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILK 411 (494)
Q Consensus 372 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 411 (494)
..+-+.....| -++.....+...|+++++.++|.
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 54444444443 13334444455666666666654
No 231
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.49 E-value=3.5 Score=39.35 Aligned_cols=238 Identities=9% Similarity=0.045 Sum_probs=137.6
Q ss_pred cccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-CCCcCHhHHHHHHHHH----HhcCCHHHHH--HHHHHHHh--CC-
Q 011081 243 VRPNVHTFNALMVGFYREGAFEKVEDVWVEMARL-GCEPDCYSYSVLMAVF----CEERRMREAE--KLWEEMRD--KN- 312 (494)
Q Consensus 243 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~----~~~g~~~~a~--~~~~~m~~--~g- 312 (494)
..-+......++..|.+.|+++...+.+..+... |..+.. ...+++.+ ......+... .+.+.... .|
T Consensus 52 ~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~k 129 (445)
T 4b4t_P 52 LASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENK 129 (445)
T ss_dssp TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCC
T ss_pred hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccc
Confidence 3456777888999999999999988877766543 433332 23333333 3334333222 22221111 11
Q ss_pred CCC---CHhHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----
Q 011081 313 VEH---DVVAYNTIIGGFCEIGEMARAEEFFREMGLS--GVESS---SVTFEHLVNGYCRAGDVDSAILVYNDMCR---- 380 (494)
Q Consensus 313 ~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~---- 380 (494)
+-. .......|...|...|++.+|.+++.++... |.... ...+...+..|...+++..|..+++.+..
T Consensus 130 iflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~ 209 (445)
T 4b4t_P 130 IFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFK 209 (445)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc
Confidence 111 1223456888999999999999999998643 22111 24567778889999999999999988743
Q ss_pred CCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHhCCC
Q 011081 381 KGFEPE--GSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIK----GLCEEGKMEEALKVQAEMVGKGF 454 (494)
Q Consensus 381 ~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~----~~~~~g~~~~A~~~~~~m~~~~~ 454 (494)
....|+ ...+...+..+...+++.+|...|.+........-+...+..++. +..-.+....-..+.........
T Consensus 210 ~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~ 289 (445)
T 4b4t_P 210 NPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNN 289 (445)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSS
T ss_pred cCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhccc
Confidence 222232 234566777788899999999998876654433334433322211 11112211222222333222222
Q ss_pred CCCHHHHHHHHHHHHhc--CCHHHHHHHHH
Q 011081 455 EPSLEIYSAFIDGYMKE--GNVEMATMLRK 482 (494)
Q Consensus 455 ~p~~~~~~~li~~~~~~--g~~~~a~~~~~ 482 (494)
.++...|..++.+|... .+++...+.++
T Consensus 290 ~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~ 319 (445)
T 4b4t_P 290 LKKLESQESLVKLFTTNELMRWPIVQKTYE 319 (445)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSHHHHHHHTC
T ss_pred ccccHHHHHHHHHHHhchHhhhHHHHHHHH
Confidence 45677888888888654 34555555443
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.38 E-value=0.53 Score=41.52 Aligned_cols=111 Identities=14% Similarity=0.068 Sum_probs=81.9
Q ss_pred CHHHHHHHHH-HHHhc--CC------HhHHHHHHHHHHHcCCCcC---HhHHHHHHHHHHhc-----CCHHHHHHHHHHH
Q 011081 246 NVHTFNALMV-GFYRE--GA------FEKVEDVWVEMARLGCEPD---CYSYSVLMAVFCEE-----RRMREAEKLWEEM 308 (494)
Q Consensus 246 ~~~~~~~li~-~~~~~--g~------~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~-----g~~~~a~~~~~~m 308 (494)
....|..++. .+... |+ ...|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++.
T Consensus 153 e~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA 230 (301)
T 3u64_A 153 GTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL 230 (301)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH
Confidence 4555666654 33332 33 45677777777765 455 56899999999994 9999999999999
Q ss_pred HhCCCCCCHhHHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCC--CCHHHHHHH
Q 011081 309 RDKNVEHDVVAYNTIIGGFCEI-GEMARAEEFFREMGLSGVE--SSSVTFEHL 358 (494)
Q Consensus 309 ~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~--~~~~~~~~l 358 (494)
++.+..-+..++......++.. |+.+++.+.+++....... |+....+.+
T Consensus 231 L~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 231 TRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9874323488899999999985 9999999999999987655 665444443
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.31 E-value=0.33 Score=36.78 Aligned_cols=68 Identities=10% Similarity=0.095 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 421 PTEKSYMFLIKGLCEEGKMEE---ALKVQAEMVGKGFEP--SLEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 421 p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
++..+--.+.+++.+..+... ++.+++...+.+ .| .....-.|.-++.+.|++++|+++++.+++..|
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 105 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 444444445555555444333 555555555432 12 122233334455555555555555555555443
No 234
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.43 E-value=1.9 Score=33.34 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=10.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 011081 431 KGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~ 451 (494)
-++.+.|++++|.++.+.+++
T Consensus 85 vg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 85 IGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh
Confidence 344455555555555555543
No 235
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.86 E-value=1.1 Score=34.22 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=11.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 011081 429 LIKGLCEEGKMEEALKVQAEMV 450 (494)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~ 450 (494)
+.-++.+.|++++|.+..+.++
T Consensus 84 LAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 84 LTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHH
Confidence 3344445555555555555554
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.73 E-value=1.3 Score=34.52 Aligned_cols=100 Identities=10% Similarity=0.151 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhcCCH------hHHHHHHHHHHHcCCCcCHh-HHHHHHHH------HHhcCCHHHHHHHHHHHHhCC
Q 011081 246 NVHTFNALMVGFYREGAF------EKVEDVWVEMARLGCEPDCY-SYSVLMAV------FCEERRMREAEKLWEEMRDKN 312 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~g~~p~~~-~~~~li~~------~~~~g~~~~a~~~~~~m~~~g 312 (494)
|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|...|.. +...++.++|.++|+.+++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 677787778777777887 7777788777664 355421 11111111 112355666666666654432
Q ss_pred CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 011081 313 VEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSG 347 (494)
Q Consensus 313 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 347 (494)
-.- ...|-....--.+.|++..|.+++......+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 111 4445444454555566666666665555554
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.84 E-value=1.5 Score=33.15 Aligned_cols=86 Identities=9% Similarity=0.010 Sum_probs=42.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCH
Q 011081 294 EERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMAR---AEEFFREMGLSGVES--SSVTFEHLVNGYCRAGDV 368 (494)
Q Consensus 294 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~ 368 (494)
....+..+.+-|......| .++..+--.+..++++..+... ++.+++++...+ .| .....-.|.-++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhH
Confidence 3334444555555444433 2455555555555555554443 555555555443 12 222233344455555666
Q ss_pred HHHHHHHHHHHHC
Q 011081 369 DSAILVYNDMCRK 381 (494)
Q Consensus 369 ~~a~~~~~~m~~~ 381 (494)
++|.+.++.+++.
T Consensus 91 ~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 91 EKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6666665555553
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.78 E-value=9.2 Score=36.41 Aligned_cols=190 Identities=9% Similarity=0.023 Sum_probs=106.5
Q ss_pred cCCHhHHHHHHHHHHHc-----CCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhHHHHHHHHH----Hc
Q 011081 260 EGAFEKVEDVWVEMARL-----GCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK-NVEHDVVAYNTIIGGF----CE 329 (494)
Q Consensus 260 ~g~~~~a~~~~~~m~~~-----g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~----~~ 329 (494)
.|++++|++.+..+.+. ...........++..|.+.|+++...+.+..+.+. |..+. ....+++.+ ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhc
Confidence 36788888877766543 23334566778889999999999988887776543 32222 223333322 22
Q ss_pred cCCHHHHH--HHHHHHHh--CC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCC---hhhHHHHHHH
Q 011081 330 IGEMARAE--EFFREMGL--SG-VES---SSVTFEHLVNGYCRAGDVDSAILVYNDMCR--KGFEPE---GSTIEVLIGE 396 (494)
Q Consensus 330 ~g~~~~A~--~~~~~m~~--~~-~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~p~---~~~~~~li~~ 396 (494)
....+... .+.+.... .| +.. .......|...|...|++.+|..++.++.. .|.... ...+...+..
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 33222211 11111111 11 111 112235567777788888888888887754 232211 2345556677
Q ss_pred HHhcCCHHHHHHHHHHHHH---hCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 397 LCDKRRVFEALDILKARVV---KFGLFPT--EKSYMFLIKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 397 ~~~~~~~~~a~~~~~~~~~---~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (494)
|...+++.+|..++.+.-. .....|+ ...|...+..+...+++.+|.+.|.+..+
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 7778888888777764321 1111222 12456666667777777777777666653
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.04 E-value=1.4 Score=44.86 Aligned_cols=50 Identities=24% Similarity=0.205 Sum_probs=27.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 433 LCEEGKMEEALKVQAEMVGKGFEP-SLEIYSAFIDGYMKEGNVEMATMLRKEM 484 (494)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m 484 (494)
|...|+++.|+++-++.... .| +-.+|..|..+|...|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 33455555555555555533 33 3555555555555555555555555544
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.60 E-value=1.2 Score=41.76 Aligned_cols=55 Identities=9% Similarity=0.010 Sum_probs=28.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 011081 288 LMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREM 343 (494)
Q Consensus 288 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 343 (494)
++..+...|++++|...+..+.... +.+...|..+|.+|.+.|+..+|++.|++.
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444555555555555555544432 334455555555555555555555555554
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.53 E-value=6.7 Score=42.58 Aligned_cols=146 Identities=11% Similarity=0.098 Sum_probs=94.4
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC---------------
Q 011081 253 LMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK----NV--------------- 313 (494)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~--------------- 313 (494)
++..+.+.+..+-+.++.... +.+...--.+..+|...|++++|.+.|++.-.. +.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 444555566666555544332 224444455677888899999999999764211 00
Q ss_pred ---CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011081 314 ---EHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESS----SVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPE 386 (494)
Q Consensus 314 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 386 (494)
..-..-|.-++..+.+.|.++.+.++-+...+....-+ ...|..+..++...|++++|...+-.+.....+
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r-- 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK-- 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--
Confidence 00113367788888888999888888776655421212 125788889999999999999988887665443
Q ss_pred hhhHHHHHHHHHhcCCHHH
Q 011081 387 GSTIEVLIGELCDKRRVFE 405 (494)
Q Consensus 387 ~~~~~~li~~~~~~~~~~~ 405 (494)
...+..++..+|..|..+.
T Consensus 971 ~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHhCCChhh
Confidence 4566777777776666544
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.17 E-value=3.9 Score=41.62 Aligned_cols=126 Identities=12% Similarity=0.073 Sum_probs=80.2
Q ss_pred HHHHHHHHHhcCC-HhHHHHHHHHHHHcCCCcCHhHH--HHHHHHHHhcCC-HHHHHHHHHHHHhC------CCCC-CHh
Q 011081 250 FNALMVGFYREGA-FEKVEDVWVEMARLGCEPDCYSY--SVLMAVFCEERR-MREAEKLWEEMRDK------NVEH-DVV 318 (494)
Q Consensus 250 ~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~-~~~a~~~~~~m~~~------g~~~-~~~ 318 (494)
-..++..+...|+ .+.|..+|+++.+. .|...++ ..++..+.+.++ --+|.+++.+..+. ...+ +..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 3455555555666 57899999999886 3433332 233333333332 22344444443321 1111 111
Q ss_pred ----------HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 319 ----------AYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDM 378 (494)
Q Consensus 319 ----------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 378 (494)
..+.=.+-+...|+++.|+++-++....- +-+-.+|..|..+|...|+++.|+-.++.+
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11222344567899999999999988763 556889999999999999999999998887
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.02 E-value=1.5 Score=41.04 Aligned_cols=72 Identities=8% Similarity=-0.014 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHhHH
Q 011081 248 HTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRD-----KNVEHDVVAY 320 (494)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~ 320 (494)
.+...++..+...|+++++...+..+.... +-+...|..+|.++.+.|+..+|++.|+...+ .|+.|...+-
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 345667788889999999999999988764 56888999999999999999999999998754 4888877653
No 244
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=89.68 E-value=0.0028 Score=59.66 Aligned_cols=121 Identities=10% Similarity=0.015 Sum_probs=61.6
Q ss_pred CCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 011081 315 HDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLI 394 (494)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 394 (494)
.++.||..+-.+|...+.+.-|.-.--.+.- .+| -...++..|-..|.+++.+.+++.-+... ......|+.|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHH
Confidence 3666777777777777776655444333321 111 12235556677777777777777655321 33555666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHH
Q 011081 395 GELCDKRRVFEALDILKARVVKFGLFP------TEKSYMFLIKGLCEEGKMEEA 442 (494)
Q Consensus 395 ~~~~~~~~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A 442 (494)
-.|++- +.++..+.++-...+-+++. ....|.-++-.|++-.+++.|
T Consensus 271 ILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA 323 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 323 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHH
T ss_pred HHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHH
Confidence 666544 33444333331111111111 122355555566665666554
No 245
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.57 E-value=26 Score=36.63 Aligned_cols=152 Identities=12% Similarity=0.109 Sum_probs=80.7
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHH---HHHHHHHcc
Q 011081 256 GFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMA--VFCEERRMREAEKLWEEMRDKNVEHDVVAYN---TIIGGFCEI 330 (494)
Q Consensus 256 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~---~li~~~~~~ 330 (494)
.+.-.|+-+....++..+.+.. +..+...+.- ++.-.|+.+.+..+.+.+.... . ...-|. ++.-+|+..
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-d-p~vRygaa~alglAyaGT 573 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-E-SLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-C-HHHHHHHHHHHHHHTTTS
T ss_pred hhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-C-HHHHHHHHHHHHHHhcCC
Confidence 3445566666666766665431 2233333333 3345677777777777776541 1 222232 234456677
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH-HHHHHH
Q 011081 331 GEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRV-FEALDI 409 (494)
Q Consensus 331 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~-~~a~~~ 409 (494)
|+.....+++..+.... ..++.-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .++++.
T Consensus 574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 78766666777776532 2233333333334445666666677776665544 44444444444444444443 566777
Q ss_pred HHHHH
Q 011081 410 LKARV 414 (494)
Q Consensus 410 ~~~~~ 414 (494)
+....
T Consensus 652 L~~L~ 656 (963)
T 4ady_A 652 LDPLT 656 (963)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 66443
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.23 E-value=8.3 Score=41.84 Aligned_cols=148 Identities=10% Similarity=0.070 Sum_probs=91.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------------
Q 011081 322 TIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFE----------------- 384 (494)
Q Consensus 322 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----------------- 384 (494)
.++..+.+.+..+.+.++.... +.+...--.+..+|...|++++|.+.|.+... |+.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence 3445555666666655544332 23334444556677788888888888866421 110
Q ss_pred ------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011081 385 ------PEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPT---EKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFE 455 (494)
Q Consensus 385 ------p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 455 (494)
.-..-|..++..+.+.+.++.+.++-...+...+-..+ ...|..+.+++...|++++|...+-.+.+...
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~- 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL- 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence 01123667777788888888888877766654432221 12577788888888888888888877765533
Q ss_pred CCHHHHHHHHHHHHhcCCHHHH
Q 011081 456 PSLEIYSAFIDGYMKEGNVEMA 477 (494)
Q Consensus 456 p~~~~~~~li~~~~~~g~~~~a 477 (494)
-......|+...|..|..+.-
T Consensus 970 -r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCHHHH
T ss_pred -HHHHHHHHHHHHHhCCChhhh
Confidence 356677777777766655443
No 247
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.60 E-value=18 Score=33.64 Aligned_cols=168 Identities=8% Similarity=-0.031 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-CCCc---CHhHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHhHH-
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARL-GCEP---DCYSYSVLMAVFCEE-RRMREAEKLWEEMRDKNVEHDVVAY- 320 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p---~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~~~~~~~- 320 (494)
..+...|...|.+.|+.++..+++.....- +.-+ .......+++.+... +..+.-.++..+..+..- .+..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 345667778888888888888877766432 1111 222345666666553 333333333333322100 011122
Q ss_pred -----HHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChh
Q 011081 321 -----NTIIGGFCEIGEMARAEEFFREMGLSGVESS-----SVTFEHLVNGYCRAGDVDSAILVYNDMCRK--GFEPEGS 388 (494)
Q Consensus 321 -----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~ 388 (494)
.-++..|...|++.+|.+++.++.+.--..| ...+..-+..|...+++.++...+...... .+.++..
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 2467777788888888777777765311111 233455566677778887777777766442 1212222
Q ss_pred hHH--HHH--HHHH-hcCCHHHHHHHHHHHHH
Q 011081 389 TIE--VLI--GELC-DKRRVFEALDILKARVV 415 (494)
Q Consensus 389 ~~~--~li--~~~~-~~~~~~~a~~~~~~~~~ 415 (494)
+.. -.. ..+. ..+++..|...|-+...
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 211 111 2234 56777777777765543
No 248
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.85 E-value=20 Score=33.35 Aligned_cols=242 Identities=7% Similarity=-0.009 Sum_probs=123.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhc-CCHhHHHHHHHHHHHcC
Q 011081 199 CNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYRE-GAFEKVEDVWVEMARLG 277 (494)
Q Consensus 199 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g 277 (494)
...|...|.+.|+.++..+++......-.. ..-.........++..+... +..+.-.++..+..+..
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a 89 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSS------------ISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA 89 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGG------------SCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------------hchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 345666666666666666666555322110 00111334455555555543 23333344444433321
Q ss_pred CCcCHhHH------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HhHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011081 278 CEPDCYSY------SVLMAVFCEERRMREAEKLWEEMRDKNVEHD-----VVAYNTIIGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 278 ~~p~~~~~------~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
.-+..+| .-++..|...|++.+|.+++..+.+.--..| ..+|-.-+..|...+++.++...+......
T Consensus 90 -~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~ 168 (394)
T 3txn_A 90 -KQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT 168 (394)
T ss_dssp -HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 1112233 2578888899999999888888765311111 344666778888889999888888876543
Q ss_pred --CCCCCHHHHHHH----HHHHH-hcCCHHHHHHHHHHHHH----CCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 347 --GVESSSVTFEHL----VNGYC-RAGDVDSAILVYNDMCR----KGFEP---EGSTIEVLIGELCDKRRVFEALDILKA 412 (494)
Q Consensus 347 --~~~~~~~~~~~l----i~~~~-~~g~~~~a~~~~~~m~~----~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~ 412 (494)
.+.+++..-..+ ...+. ..+++.+|...|-+..+ .| .| +...|..+.. ... ++..+.-.++..
T Consensus 169 ~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~-~~~~~~~lkYlvL~a-Ll~-~~r~el~~~l~~ 245 (394)
T 3txn_A 169 ANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVD-SVKALTSLKYMLLCK-IML-GQSDDVNQLVSG 245 (394)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHH-HHT-TCGGGHHHHHHS
T ss_pred hccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHH-HHc-CCHHHHHHHhcc
Confidence 222333322211 22345 67888888887766542 11 11 1222322222 222 222222222221
Q ss_pred H-HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 011081 413 R-VVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLE 459 (494)
Q Consensus 413 ~-~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 459 (494)
. .... ..|....+..++.+| +.+++.+..+++..... .+..|..
T Consensus 246 ~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~ 290 (394)
T 3txn_A 246 KLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVI 290 (394)
T ss_dssp HHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred cccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChH
Confidence 1 1222 345666666666665 45677777666665533 2444543
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.40 E-value=8.1 Score=27.71 Aligned_cols=63 Identities=19% Similarity=0.270 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011081 402 RVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFID 466 (494)
Q Consensus 402 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 466 (494)
+.-+..+-+. .+-...+.|++....+.+.+|-|.+++..|.++|+-.+.+ ..+...+|..+++
T Consensus 25 D~~e~rrglN-~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMN-TLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHH-HHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHH-HHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 4455555555 4555677888888888889998888999999988888764 3334456776665
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.52 E-value=10 Score=27.20 Aligned_cols=63 Identities=11% Similarity=0.072 Sum_probs=43.1
Q ss_pred CHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 262 AFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 262 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
+.=+..+-++.+....+.|+.....+.+++|.+.+++..|.++++.++.+- .....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 344566667777777778888888888888888888888888888776542 222345655544
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=83.43 E-value=7.6 Score=29.53 Aligned_cols=66 Identities=8% Similarity=-0.025 Sum_probs=49.3
Q ss_pred HHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcc
Q 011081 163 LLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSD 228 (494)
Q Consensus 163 ~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 228 (494)
....++++........+++.+++.+.+.+..-....+-.|.-++.+.|+++.|++..+.+++..|.
T Consensus 45 ~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 45 NYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 344556666665568899999999988763323444555667899999999999999999887654
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.79 E-value=10 Score=30.15 Aligned_cols=69 Identities=12% Similarity=0.102 Sum_probs=43.7
Q ss_pred ccccCHHHHH--HHHHHHHhcCCHhHHHHHHHHHHHcC-CCcCH-------hHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 242 RVRPNVHTFN--ALMVGFYREGAFEKVEDVWVEMARLG-CEPDC-------YSYSVLMAVFCEERRMREAEKLWEEMRD 310 (494)
Q Consensus 242 ~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~ 310 (494)
|..|....|+ .-+..+...|.++.|+-+.+.+.... ..|+. .++..+.+++...|++..|...|++.++
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3445444443 34677788899999988887765431 12332 2566778889999999999999998643
No 253
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=81.58 E-value=16 Score=28.14 Aligned_cols=72 Identities=7% Similarity=-0.084 Sum_probs=51.6
Q ss_pred ChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcc
Q 011081 157 APFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSD 228 (494)
Q Consensus 157 ~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 228 (494)
++.+--....++.+........+++.+++.+.+.+..-.....-.|.-++.+.|++++|++..+.+++..|.
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 333433445566677766668899999999988654323333445566899999999999999999887654
No 254
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=81.23 E-value=0.21 Score=47.37 Aligned_cols=228 Identities=11% Similarity=0.084 Sum_probs=141.5
Q ss_pred CHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHH
Q 011081 104 SLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDI 183 (494)
Q Consensus 104 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~ 183 (494)
|+..|..+|.+..+.|.+++-...+..+. +...++.+=+.|+-+|++.++ +.+-.+.
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaR--------------------k~~ke~~IDteLi~ayAk~~r---L~elEef 138 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMAR--------------------KKARESYVETELIFALAKTNR---LAELEEF 138 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTS--------------------TTCCSTTTTHHHHHHHHTSCS---SSTTTST
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHH--------------------HHhcccccHHHHHHHHHhhCc---HHHHHHH
Confidence 45578888898888888887776665332 234455666788888888888 3332222
Q ss_pred HHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccc--------ccccccccccccccCHHHHHHHHH
Q 011081 184 VRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATA--------GIGKDVKRVVRVRPNVHTFNALMV 255 (494)
Q Consensus 184 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~p~~~~~~~li~ 255 (494)
=-.||..-...+.+-|...|.++.|.-+|..+..-..-..+ +..+.++| .-+..||-.+-.
T Consensus 139 -------l~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK----Ans~ktWKeV~~ 207 (624)
T 3lvg_A 139 -------INGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK----ANSTRTWKEVCF 207 (624)
T ss_dssp -------TSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT----CCSSCSHHHHTH
T ss_pred -------HcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh----cCChhHHHHHHH
Confidence 13467777788888888889998888887766432221110 11112222 346778988889
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHH
Q 011081 256 GFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMAR 335 (494)
Q Consensus 256 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 335 (494)
+|...+++.-|.-.--.+.-. +| -...++..|-+.|.+++-+.+++.-.... ......|+-|.-.|++- ++++
T Consensus 208 ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeK 280 (624)
T 3lvg_A 208 ACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQK 280 (624)
T ss_dssp HHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTH
T ss_pred HHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHH
Confidence 999999888776655444422 11 22346677788888888888887766322 34667788887777775 4555
Q ss_pred HHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCCHHHHH
Q 011081 336 AEEFFREMGLS-GVES------SSVTFEHLVNGYCRAGDVDSAI 372 (494)
Q Consensus 336 A~~~~~~m~~~-~~~~------~~~~~~~li~~~~~~g~~~~a~ 372 (494)
..+.++....+ +++. ....|.-++-.|.+-.+++.|.
T Consensus 281 lmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 281 MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 55554433222 2211 1234666666666666666553
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.57 E-value=13 Score=29.64 Aligned_cols=59 Identities=5% Similarity=-0.028 Sum_probs=29.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhC-CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 322 TIIGGFCEIGEMARAEEFFREMGLS-GVESSS-------VTFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 322 ~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
.-+..+...|.++.|+-+.+.+... +..|+. .++..+.+++...|++..|...|++.++
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3455555566666666555544322 112221 1334455556666666666666665543
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.11 E-value=23 Score=33.44 Aligned_cols=99 Identities=6% Similarity=-0.080 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC--CcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHhH--H
Q 011081 248 HTFNALMVGFYREGAFEKVEDVWVEMARLGC--EPDCYSYSVLMAVFCEERRMREAEKLWEEMRD---KNVEHDVVA--Y 320 (494)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~~~~~~--~ 320 (494)
.++..+...|.+.|++++|.+.|.++..... .--...+-.+|..+...+++..+...+.+... .+-.++... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3566788999999999999999999987632 22345677888999999999999999988753 232232221 1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhC
Q 011081 321 NTIIGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 321 ~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
..-...+...+++..|...|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11122234578899998888877543
No 257
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=78.55 E-value=27 Score=28.79 Aligned_cols=55 Identities=16% Similarity=0.140 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011081 331 GEMARAEEFFREMGLSGVES-SSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEP 385 (494)
Q Consensus 331 g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 385 (494)
+...++.++|..|...|+-- -...|......+...|++.+|.++|+.-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 33556666666666655432 33445556666666677777777776666666555
No 258
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.25 E-value=16 Score=26.10 Aligned_cols=50 Identities=16% Similarity=0.102 Sum_probs=21.0
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011081 327 FCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 382 (494)
+.+.|++++|..+.+.+- .||...|-+|-. .+.|..+++..-+.++..+|
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 344444554444433332 444444443332 23444444444444444433
No 259
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.12 E-value=20 Score=27.24 Aligned_cols=60 Identities=12% Similarity=0.114 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 265 KVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 265 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
+..+-++.+....+.|+.....+.+.+|.+.+++..|.++|+-++.+- .+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 456666677777788888888888888888888888888888776542 233445655544
No 260
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.72 E-value=17 Score=26.02 Aligned_cols=86 Identities=10% Similarity=0.043 Sum_probs=61.6
Q ss_pred CHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHH
Q 011081 262 AFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFR 341 (494)
Q Consensus 262 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 341 (494)
..++|.-+-+.+...+. ...+--+-+..+...|++++|..+.+.+. .||...|-+|.. .+.|-.+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 57888888888877653 22222333456778999999998776554 789999988766 47788888888888
Q ss_pred HHHhCCCCCCHHHHH
Q 011081 342 EMGLSGVESSSVTFE 356 (494)
Q Consensus 342 ~m~~~~~~~~~~~~~ 356 (494)
++..+| .|....|.
T Consensus 94 ~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 94 RLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHTTCC-CHHHHHHH
T ss_pred HHHhCC-CHHHHHHH
Confidence 888877 55554443
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=77.50 E-value=16 Score=27.78 Aligned_cols=62 Identities=19% Similarity=0.276 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011081 403 VFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFID 466 (494)
Q Consensus 403 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 466 (494)
.-+..+-+. .+-...+.|++....+.+.+|-+.+++..|.++|+-.+.+ ..+...+|..+++
T Consensus 69 ~wElrrglN-~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMN-TLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHH-HHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHH-HHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 334444444 3445567788888888888888888888888888777654 3344556666654
No 262
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=77.44 E-value=15 Score=26.15 Aligned_cols=50 Identities=10% Similarity=-0.029 Sum_probs=21.7
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011081 327 FCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 382 (494)
+.+.|++++|..+.+.+- .||...|-+|-. .+.|..+++..-+.++..+|
T Consensus 49 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 344455555544433321 444444444332 24444444444444444443
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.32 E-value=6.6 Score=34.07 Aligned_cols=116 Identities=9% Similarity=0.062 Sum_probs=77.0
Q ss_pred HHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCH
Q 011081 168 CLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNV 247 (494)
Q Consensus 168 ~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 247 (494)
..+.|+ ++++++....-++..+. |...-..|+..+|-.|++++|.+-++...+.++. ..|..
T Consensus 7 ll~~g~---L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~--------------~~~~a 68 (273)
T 1zbp_A 7 ALSEGQ---LQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPE--------------YLPGA 68 (273)
T ss_dssp HTTTTC---HHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG--------------GHHHH
T ss_pred HHhCCC---HHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch--------------hhHHH
Confidence 445567 99999999888887644 8888889999999999999999999988776654 34455
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc-----CHhHHHHHHHHHH--hcCCHHHHHHHHHHHHhC
Q 011081 248 HTFNALMVGFYREGAFEKVEDVWVEMARLGCEP-----DCYSYSVLMAVFC--EERRMREAEKLWEEMRDK 311 (494)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~ 311 (494)
..|..+|.+ +..=.+...-+-.| ...-...++.+.. ..|+.++|.++-....+.
T Consensus 69 ~~yr~lI~a----------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 69 SQLRHLVKA----------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHHHHHHHH----------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 566666654 22222222222222 2223445555544 358888888887777543
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.49 E-value=24 Score=33.35 Aligned_cols=97 Identities=11% Similarity=-0.042 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCCHHHH--H
Q 011081 284 SYSVLMAVFCEERRMREAEKLWEEMRDK--NVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS---GVESSSVTF--E 356 (494)
Q Consensus 284 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~--~ 356 (494)
+...+...|.+.|+++.|.+.|.++... +..--...+-.+|..+...+++..+...+.+.... +-.++...- .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5677888999999999999999998764 22334567778888888889999998888887532 222322211 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 357 HLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 357 ~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
.-...+...+++.+|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 112223345777777777766554
No 265
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=76.13 E-value=80 Score=33.06 Aligned_cols=183 Identities=11% Similarity=0.053 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHhCCCC-cChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHH
Q 011081 178 ETCVDIVRMLMSRGLS-VKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVG 256 (494)
Q Consensus 178 ~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 256 (494)
+++.+.+..+....-. ....+--+|...+...|+-+....++..+.+...+ ++.-.-.+.-+
T Consensus 471 eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e-----------------~vrR~aalgLG 533 (963)
T 4ady_A 471 IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHG-----------------NITRGLAVGLA 533 (963)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCH-----------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcH-----------------HHHHHHHHHHH
Confidence 3555555555543211 00112223444456667777777777766542211 22323334445
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCcCHhHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHH
Q 011081 257 FYREGAFEKVEDVWVEMARLGCEPDCYSY--SVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMA 334 (494)
Q Consensus 257 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 334 (494)
+.-.|+.+.+..+++.+.... .|....- .++.-+|+..|+.....++++.+.... ..++.....+.-++...|+.+
T Consensus 534 ll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e 611 (963)
T 4ady_A 534 LINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYT 611 (963)
T ss_dssp HHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCS
T ss_pred hhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHH
Confidence 557799999999998887642 2222221 234456788899888888998888652 223333333444555677777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 011081 335 RAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDV-DSAILVYNDMCR 380 (494)
Q Consensus 335 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~ 380 (494)
.+.++++.+.+.+ .|.+.--.++.-+....|.. .++..++..+..
T Consensus 612 ~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 612 TVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp SHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 7788887776654 55555555555555555554 578888888865
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=75.62 E-value=40 Score=29.26 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=34.7
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011081 326 GFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 381 (494)
...+.|++++|++....-.+.. +-|...-..++..+|-.|+++.|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3445666666666666665554 556666666666677777777776666666554
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=75.60 E-value=16 Score=26.08 Aligned_cols=86 Identities=15% Similarity=0.133 Sum_probs=61.4
Q ss_pred CHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHH
Q 011081 262 AFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFR 341 (494)
Q Consensus 262 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 341 (494)
..++|.-+-+.+...+. ...+--+-+..+...|++++|..+.+.+. .||...|-+|.. .+.|-.+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 57888888888877653 22222333456778999999988765544 789999887765 47888888888888
Q ss_pred HHHhCCCCCCHHHHH
Q 011081 342 EMGLSGVESSSVTFE 356 (494)
Q Consensus 342 ~m~~~~~~~~~~~~~ 356 (494)
++..+| .|....|.
T Consensus 93 ~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 93 GLGGSS-DPALADFA 106 (115)
T ss_dssp HHHTCS-SHHHHHHH
T ss_pred HHHhCC-CHHHHHHH
Confidence 888877 55555443
No 268
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=74.07 E-value=50 Score=29.74 Aligned_cols=81 Identities=12% Similarity=0.042 Sum_probs=40.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011081 386 EGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFI 465 (494)
Q Consensus 386 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 465 (494)
|...-..+...|.+.+++.+|...|- .|-.+....|..++.-+...+... .+|...-.+++
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~i-----lg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL 195 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLV-----LGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVL 195 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHT-----TSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHH-----hcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHH
Confidence 44455566667777777777766652 132333345544444443333211 11222222222
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 011081 466 DGYMKEGNVEMATMLRKEMFE 486 (494)
Q Consensus 466 ~~~~~~g~~~~a~~~~~~m~~ 486 (494)
-|.-.|+...|..+++...+
T Consensus 196 -~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 196 -PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -HHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHhCCHHHHHHHHHHHHH
Confidence 34455677777776666554
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=73.28 E-value=34 Score=28.12 Aligned_cols=55 Identities=16% Similarity=0.039 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011081 401 RRVFEALDILKARVVKFGLFP-TEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEP 456 (494)
Q Consensus 401 ~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 456 (494)
+...++.++|. .|...|+-- -...|......+...|++++|.++|+.-++.+-.|
T Consensus 93 ~~~~~p~~if~-~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFK-YMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHH-HHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHH-HHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 33556666666 444444432 23455666666666677777777777766665555
No 270
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=71.23 E-value=17 Score=32.77 Aligned_cols=106 Identities=8% Similarity=0.019 Sum_probs=52.7
Q ss_pred HHHHHHHHHHCCCCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHH
Q 011081 371 AILVYNDMCRKGFEPEGSTI--EVLIGELCDKRRVFEALDILKARVVKFGLFPT---EKSYMFLIKGLCEEGKMEEALKV 445 (494)
Q Consensus 371 a~~~~~~m~~~~~~p~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~ 445 (494)
...+.+.+++.|..++.... ...+...+..|..+....++. ..|..++ ..-.+.|..+ ++.|+.+ +
T Consensus 218 ~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~----~~~~~vn~~d~~G~TpL~~A-~~~g~~~----i 288 (337)
T 4g8k_A 218 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE----QEHIEINDTDSDGKTALLLA-VELKLKK----I 288 (337)
T ss_dssp HHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHT----STTCCTTCBCTTSCBHHHHH-HHTTCHH----H
T ss_pred HHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHH----hcCCcccCcCCCCCCHHHHH-HHcCCHH----H
Confidence 33455556677765543211 123444566777765554432 2233222 2222334333 4567654 4
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccccc
Q 011081 446 QAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVRQE 492 (494)
Q Consensus 446 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~pd 492 (494)
.+.+++.|..++..+ .+...++.|+.+ +.+.+++.|-.||
T Consensus 289 v~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 289 AELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKED 328 (337)
T ss_dssp HHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC-
T ss_pred HHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCC
Confidence 444566677776543 334445667654 4555666665554
No 271
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=70.96 E-value=22 Score=30.64 Aligned_cols=49 Identities=10% Similarity=0.095 Sum_probs=22.7
Q ss_pred HHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChH---hHHHHHHHHHcCCChhHHHHHH
Q 011081 164 LIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVS---TCNALIWEVSRGKGVISGYEIY 219 (494)
Q Consensus 164 li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~ll~~~~~~~~~~~a~~~~ 219 (494)
.+...++.|+ .+ +++.+.+.|..++.. .-.+.+...+..|+.+-+..++
T Consensus 8 ~L~~A~~~g~---~~----~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 59 (285)
T 1wdy_A 8 LLIKAVQNED---VD----LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59 (285)
T ss_dssp HHHHHHHTTC---HH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCC---HH----HHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 3444555666 43 344445555544322 1123344445556655444443
No 272
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=66.38 E-value=72 Score=28.43 Aligned_cols=167 Identities=12% Similarity=0.078 Sum_probs=79.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHH----HHHHHHHhCCCCCCHHHHHHHHHH
Q 011081 286 SVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAE----EFFREMGLSGVESSSVTFEHLVNG 361 (494)
Q Consensus 286 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~----~~~~~m~~~~~~~~~~~~~~li~~ 361 (494)
.++..=|.+.+++++|.+++..--. .+.+.|+...|. -+.+-..+.+++++......++..
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3444556666777777766543211 122233333222 233344444555665555555555
Q ss_pred HHhcCCHH-HHHHHHHHHHH----CCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011081 362 YCRAGDVD-SAILVYNDMCR----KGF--EPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLC 434 (494)
Q Consensus 362 ~~~~g~~~-~a~~~~~~m~~----~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 434 (494)
+.....-+ .=.++.+.+++ .|- .-|......+...|.+.+++.+|...|- .|-.-+...+..++.-+.
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-----~~~~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-----LGTHDSMIKYVDLLWDWL 176 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-----TSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-----hCCCccHHHHHHHHHHHH
Confidence 44432111 11223333322 221 1255566677777788888888877653 111113444555544444
Q ss_pred hc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011081 435 EE---GKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFEN 487 (494)
Q Consensus 435 ~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 487 (494)
.. |...++--++. .++ -.|.-.|+...|..+++...+.
T Consensus 177 ~~~~~~~~~e~dlf~~--------------RaV-L~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 177 CQVDDIEDSTVAEFFS--------------RLV-FNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHTTCCCHHHHHHHHH--------------HHH-HHHHHTTBHHHHHHHHHHHHHH
T ss_pred HhcCCCCcchHHHHHH--------------HHH-HHHHHhcCHHHHHHHHHHHHHH
Confidence 43 43333211111 112 2344567788888887776543
No 273
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=65.01 E-value=6.5 Score=34.19 Aligned_cols=17 Identities=12% Similarity=0.300 Sum_probs=8.0
Q ss_pred HHHHHHhcCCHhHHHHH
Q 011081 253 LMVGFYREGAFEKVEDV 269 (494)
Q Consensus 253 li~~~~~~g~~~~a~~~ 269 (494)
.+...++.|+.+.+..+
T Consensus 8 ~L~~A~~~g~~~~v~~L 24 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQL 24 (285)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHH
Confidence 34444555665444333
No 274
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=64.57 E-value=28 Score=30.46 Aligned_cols=47 Identities=9% Similarity=0.032 Sum_probs=23.9
Q ss_pred HHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHH
Q 011081 167 CCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYR 220 (494)
Q Consensus 167 ~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 220 (494)
..+..|+ .+ +.+.+.+.|..++...-.+.+...+..|+.+-+..+++
T Consensus 37 ~A~~~g~---~~----~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 83 (285)
T 3kea_A 37 YAIADNN---VR----LVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLF 83 (285)
T ss_dssp HHHHTTC---HH----HHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHcCC---HH----HHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 3445566 43 34444555655544332334455566677665555444
No 275
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=62.48 E-value=93 Score=28.35 Aligned_cols=77 Identities=17% Similarity=0.138 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011081 390 IEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGK--MEEALKVQAEMVGKGFEPSLEIYSAFIDG 467 (494)
Q Consensus 390 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 467 (494)
...++.-|...++.++|.+.++ .+....+. .......+..++-+.++ .+...+++..+.+.|+-........+.+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~-EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLK-ELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHH-HHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHH-HccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4677788888889999988887 44322111 13344555555555443 45677888888877766555444444443
Q ss_pred H
Q 011081 468 Y 468 (494)
Q Consensus 468 ~ 468 (494)
+
T Consensus 298 l 298 (358)
T 3eiq_C 298 Y 298 (358)
T ss_dssp H
T ss_pred H
Confidence 3
No 276
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=62.28 E-value=32 Score=28.75 Aligned_cols=86 Identities=10% Similarity=-0.004 Sum_probs=46.2
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCcCHhH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhH--HHHHHHHHHc
Q 011081 254 MVGFYREGAFEKVEDVWVEMARLGCEPDCYS--YSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVA--YNTIIGGFCE 329 (494)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~ 329 (494)
+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+ +.+.+.|..++... -...+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV----RLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHH----HHHHHcCCCccccCCCCCCHHHHHHH
Confidence 4455677888888888877766665544321 12344455567776544 44445554443221 1123333455
Q ss_pred cCCHHHHHHHHHHH
Q 011081 330 IGEMARAEEFFREM 343 (494)
Q Consensus 330 ~g~~~~A~~~~~~m 343 (494)
.|+.+-+..+++..
T Consensus 89 ~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 89 HRSPTCLRALLDSA 102 (241)
T ss_dssp TTCHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHcC
Confidence 67766655555543
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=61.48 E-value=56 Score=25.49 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011081 336 AEEFFREMGLSGVES-SSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEP 385 (494)
Q Consensus 336 A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 385 (494)
+.++|..|..+|+-- -...|......+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 566666666665432 33445556666666666666766666666665555
No 278
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=60.37 E-value=93 Score=27.69 Aligned_cols=25 Identities=32% Similarity=0.236 Sum_probs=16.1
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHH
Q 011081 316 DVVAYNTIIGGFCEIGEMARAEEFF 340 (494)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~A~~~~ 340 (494)
+......+...|.+.|++.+|...|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 5556666666666667766666655
No 279
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=54.92 E-value=73 Score=24.82 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=26.3
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccccc
Q 011081 442 ALKVQAEMVGKGFEPS-LEIYSAFIDGYMKEGNVEMATMLRKEMFENQVRQ 491 (494)
Q Consensus 442 A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 491 (494)
+.++|..|..+|+.-. ..-|......+...|++++|.++++.-++++-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5555555555544433 3344444455555555555555555555555444
No 280
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=54.47 E-value=21 Score=29.97 Aligned_cols=184 Identities=7% Similarity=-0.001 Sum_probs=89.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh---HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHH
Q 011081 288 LMAVFCEERRMREAEKLWEEMRDKNVEHDVV---AYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSV---TFEHLVNG 361 (494)
Q Consensus 288 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~li~~ 361 (494)
.+...++.|+.+.+..+++.+.+.|..++.. -++ .+...+..|+.+- ++.+.+.|..++.. -.+ .+..
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t-~l~~ 85 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQT-PLHLAVITTLPSV----VRLLVTAGASPMALDRHGQT-AAHL 85 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCC-HHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCC-HHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCC-HHHH
Confidence 4556677899999888888877776554432 223 3344456677654 44444555444322 222 3344
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHh
Q 011081 362 YCRAGDVDSAILVYNDMCRKGFEP---EGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKS---YMFLIKGLCE 435 (494)
Q Consensus 362 ~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~---~~~li~~~~~ 435 (494)
.+..|+.+-+..+++.....++.+ +..-.+ .+...+..|..+-...+++ .|..++... -...+...++
T Consensus 86 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~-----~g~~~~~~~~~~g~t~L~~A~~ 159 (241)
T 1k1a_A 86 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT-ALHVAVNTECQETVQLLLE-----RGADIDAVDIKSGRSPLIHAVE 159 (241)
T ss_dssp HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHHH-----TTCCTTCCCTTTCCCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCccccccccCcCCCc-HHHHHHHcCCHHHHHHHHH-----cCCCcccccccCCCcHHHHHHH
Confidence 456777766665555533211122 112222 2333445666554443333 343333211 1223344456
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHccccc
Q 011081 436 EGKMEEALKVQAEMVGKGFEPSLEI--YSAFIDGYMKEGNVEMATMLRKEMFENQVRQ 491 (494)
Q Consensus 436 ~g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 491 (494)
.|+.+-+..+ .+.|..++... -.+.+...+..|+.+ +++.+++.|..+
T Consensus 160 ~~~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~ 209 (241)
T 1k1a_A 160 NNSLSMVQLL----LQHGANVNAQMYSGSSALHSASGRGLLP----LVRTLVRSGADS 209 (241)
T ss_dssp TTCHHHHHHH----HHTTCCTTCBCTTSCBHHHHHHHHTCHH----HHHHHHHTTCCT
T ss_pred cCCHHHHHHH----HHcCCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHhcCCCC
Confidence 6776654444 44455553211 122334445667755 444445555544
No 281
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=54.05 E-value=14 Score=31.05 Aligned_cols=206 Identities=11% Similarity=0.052 Sum_probs=93.5
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCcCHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh----HHHHHHHHHHc
Q 011081 256 GFYREGAFEKVEDVWVEMARLGCEPDCY--SYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVV----AYNTIIGGFCE 329 (494)
Q Consensus 256 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----~~~~li~~~~~ 329 (494)
..++.|+.+.+..++ +.|..++.. .-.+.+...++.|+.+-+..++ +.|..++.. .++ .+...+.
T Consensus 15 ~A~~~g~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~~~~~~~~~~~~~~t-~L~~A~~ 85 (240)
T 3eu9_A 15 KATQYGIYERCRELV----EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYI----SKGAIVDQLGGDLNST-PLHWATR 85 (240)
T ss_dssp HHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCBTTTTBC-HHHHHHH
T ss_pred HHHHcCChHHHHHHH----HcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHH----HcCCcchhhcCCcCCC-hhHHHHH
Confidence 345677765554444 455443321 1223556667778876555444 444332211 222 3344455
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCCH
Q 011081 330 IGEMARAEEFFREMGLSGVESSS---VTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEG---STIEVLIGELCDKRRV 403 (494)
Q Consensus 330 ~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~ 403 (494)
.|+.+-+ +.+.+.|..++. ...+. +...+..|+.+ +++.+.+.|..++. .-.+.+..+.. .+..
T Consensus 86 ~~~~~~v----~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~~-~~~~ 155 (240)
T 3eu9_A 86 QGHLSMV----VQLMKYGADPSLIDGEGCSC-IHLAAQFGHTS----IVAYLIAKGQDVDMMDQNGMTPLMWAAY-RTHS 155 (240)
T ss_dssp HTCHHHH----HHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH-HCCS
T ss_pred cCCHHHH----HHHHHcCCCCcccCCCCCCH-HHHHHHcCHHH----HHHHHHhcCCCccccCCCCCcHHHHHHH-hCCh
Confidence 6666544 344444544432 22233 33445567765 44445555554432 22233433333 3333
Q ss_pred HHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHH
Q 011081 404 FEALDILKARVVKFGLFPTEKS---YMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEI--YSAFIDGYMKEGNVEMAT 478 (494)
Q Consensus 404 ~~a~~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~ 478 (494)
.+..+++. +.|..++... -.+.+...+..|+.+-+..+++ .|..++... -.+-+....+.|+.+-+.
T Consensus 156 ~~~~~~L~----~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~A~~~~~~~~v~ 227 (240)
T 3eu9_A 156 VDPTRLLL----TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE----AGANVDAQNIKGESALDLAKQRKNVWMIN 227 (240)
T ss_dssp STTHHHHH----HTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHH----HTCCTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred HHHHHHHH----hcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence 33333332 3343333211 1123444556777765554444 354444211 112345556778877766
Q ss_pred HHHHHHHHcc
Q 011081 479 MLRKEMFENQ 488 (494)
Q Consensus 479 ~~~~~m~~~~ 488 (494)
.+++...+.+
T Consensus 228 ~L~~~~~~~~ 237 (240)
T 3eu9_A 228 HLQEARQAKG 237 (240)
T ss_dssp HHHHHC----
T ss_pred HHHHhhhccC
Confidence 6666554443
No 282
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=53.86 E-value=50 Score=26.58 Aligned_cols=91 Identities=11% Similarity=0.064 Sum_probs=45.2
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCcCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh---HHHHHHHHHHc-cC
Q 011081 257 FYREGAFEKVEDVWVEMARLGCEPDC-YSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVV---AYNTIIGGFCE-IG 331 (494)
Q Consensus 257 ~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~-~g 331 (494)
.++.|+++....++.. +..... ..-.+.+...+..|+.+.-.++.+.+.+.|..++.. -++.|..++.. ..
T Consensus 13 Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~ 88 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGN 88 (186)
T ss_dssp HHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTT
T ss_pred HHHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCc
Confidence 3456777765555432 211111 111234445556666665566677777777655432 22333332222 23
Q ss_pred CHHHHHHHHHHHHhCCCCCC
Q 011081 332 EMARAEEFFREMGLSGVESS 351 (494)
Q Consensus 332 ~~~~A~~~~~~m~~~~~~~~ 351 (494)
+.....++.+.+.+.|..++
T Consensus 89 ~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 89 DITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp CHHHHHHHHHHHHHTTCCSS
T ss_pred chhhHHHHHHHHHHCCCCCC
Confidence 34445566666666665554
No 283
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=53.61 E-value=81 Score=24.94 Aligned_cols=50 Identities=10% Similarity=0.186 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011081 336 AEEFFREMGLSGVES-SSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEP 385 (494)
Q Consensus 336 A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 385 (494)
+.++|..|..+|+-- -...|......+...|++.+|.++|..-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 455666666655432 23445555555666666666666666666665555
No 284
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=52.96 E-value=1e+02 Score=26.02 Aligned_cols=90 Identities=13% Similarity=0.134 Sum_probs=54.4
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHc--CCCc----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 252 ALMVGFYREGAFEKVEDVWVEMARL--GCEP----DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 252 ~li~~~~~~g~~~~a~~~~~~m~~~--g~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
--++.+....++++|.+++++..+. ++++ +.......+..-.....-.-+..+.+++.. ..+.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 4467888899999999999877643 2221 112223333333333333444455555533 345666667778
Q ss_pred HHHccCCHHHHHHHHHHHH
Q 011081 326 GFCEIGEMARAEEFFREMG 344 (494)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~ 344 (494)
.+.+.|+.++|.++|-+..
T Consensus 100 ~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 8888888888888876653
No 285
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=52.52 E-value=81 Score=28.75 Aligned_cols=64 Identities=20% Similarity=0.232 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcccc
Q 011081 426 YMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGN--VEMATMLRKEMFENQVR 490 (494)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~ 490 (494)
...++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+...+++..+.+.|+-
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 577888899999999999999999421111 23445555556655443 45677888888876653
No 286
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=52.46 E-value=1.9e+02 Score=28.74 Aligned_cols=226 Identities=12% Similarity=0.019 Sum_probs=119.3
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHH--HHHHHHHHHhCC-----------
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMRE--AEKLWEEMRDKN----------- 312 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~--a~~~~~~m~~~g----------- 312 (494)
+...-.....+....|+..+|......+-..| ......+..++..+.+.|.+.. ...=++.+...|
T Consensus 101 ~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~ 179 (618)
T 1qsa_A 101 TTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQ 179 (618)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 55555566677778888888888777777666 3445667778888877665533 222233333333
Q ss_pred CCCCHh-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 011081 313 VEHDVV-AYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVT---FEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGS 388 (494)
Q Consensus 313 ~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 388 (494)
+.++.. ....++..+.+- ..+...... +.++... +...+.-+.+ .+.+.|...+....+.. ..+..
T Consensus 180 l~~~~~~~a~~~~al~~~p---~~~~~~~~~-----~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~ 249 (618)
T 1qsa_A 180 MPADYQTIASAIISLANNP---NTVLTFART-----TGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNED 249 (618)
T ss_dssp CCGGGHHHHHHHHHHHHCG---GGHHHHHHH-----SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHH
T ss_pred CCHHHHHHHHHHHHHHhCh---HhHHHHHhc-----cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHH
Confidence 111110 111222211111 111111111 1222221 1222333333 37788999998876543 22332
Q ss_pred hHHHHH----HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011081 389 TIEVLI----GELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAF 464 (494)
Q Consensus 389 ~~~~li----~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 464 (494)
....+- ......+...++...+...... ..+.......+....+.|+++.|.+.|..|..... ....-.--+
T Consensus 250 ~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~ 325 (618)
T 1qsa_A 250 QIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQ 325 (618)
T ss_dssp HHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHH
Confidence 222222 2223344244555665543322 23443344444555677999999999998865321 133334446
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 011081 465 IDGYMKEGNVEMATMLRKEMFE 486 (494)
Q Consensus 465 i~~~~~~g~~~~a~~~~~~m~~ 486 (494)
.+++...|+.++|..+|+.+.+
T Consensus 326 ~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 326 ADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHhc
Confidence 6678888999999999888764
No 287
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=51.31 E-value=1e+02 Score=25.30 Aligned_cols=17 Identities=6% Similarity=0.085 Sum_probs=7.8
Q ss_pred CCHHHHHHHHHHHHhCC
Q 011081 296 RRMREAEKLWEEMRDKN 312 (494)
Q Consensus 296 g~~~~a~~~~~~m~~~g 312 (494)
.+.+.|+-++-+|++.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 44444444444444444
No 288
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=50.01 E-value=1.1e+02 Score=25.17 Aligned_cols=65 Identities=3% Similarity=0.040 Sum_probs=44.3
Q ss_pred HHHHHHHHh---cCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCCCCC
Q 011081 251 NALMVGFYR---EGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERR-----MREAEKLWEEMRDKNVEHD 316 (494)
Q Consensus 251 ~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~g~~~~ 316 (494)
--+|+++.| ..+.+.|+-++.+|++.| .|.-..-..++.+.-.-|. +..|...++.....|.+--
T Consensus 15 Yd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~ 87 (204)
T 2r9g_A 15 YDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEA 87 (204)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 345555554 579999999999999999 7766666666666655554 3455566666666675433
No 289
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=49.18 E-value=56 Score=27.39 Aligned_cols=52 Identities=12% Similarity=0.040 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011081 404 FEALDILKARVVKFGLFPT-EKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEP 456 (494)
Q Consensus 404 ~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 456 (494)
+++.++|. .|...|+--. ...|......+...|++++|.++|..-++.+-.|
T Consensus 131 ~~p~~if~-~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFS-FLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHH-HHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHH-HHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 35556665 4555554333 3456666666777777777777777777665555
No 290
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=48.62 E-value=2.6e+02 Score=29.30 Aligned_cols=24 Identities=4% Similarity=-0.062 Sum_probs=11.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 286 SVLMAVFCEERRMREAEKLWEEMR 309 (494)
Q Consensus 286 ~~li~~~~~~g~~~~a~~~~~~m~ 309 (494)
..++.+++...+.+...++++...
T Consensus 762 ~~ll~aL~~~~d~~~l~~~L~~~l 785 (909)
T 4fke_A 762 DKLRSALACSNEVWLLNRYLGYTL 785 (909)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHh
Confidence 334444444444444444444443
No 291
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=48.26 E-value=44 Score=27.71 Aligned_cols=38 Identities=13% Similarity=0.024 Sum_probs=16.9
Q ss_pred HHHHHHhCCCCcChHh--HHHHHHHHHcCCChhHHHHHHH
Q 011081 183 IVRMLMSRGLSVKVST--CNALIWEVSRGKGVISGYEIYR 220 (494)
Q Consensus 183 ~~~~m~~~g~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~ 220 (494)
+++.+.+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 24 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 63 (240)
T 3eu9_A 24 RCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS 63 (240)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 3444445555443221 1223444555566554444443
No 292
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=47.02 E-value=19 Score=22.82 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=15.6
Q ss_pred hcCCHHHHHHHHHHHHHccccccCC
Q 011081 470 KEGNVEMATMLRKEMFENQVRQEDG 494 (494)
Q Consensus 470 ~~g~~~~a~~~~~~m~~~~~~pd~g 494 (494)
..|+++.|+..+-+|...+.+|+.|
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~~~~ 59 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGPSSG 59 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSCCCC
T ss_pred cCCCHHHHHHHHHcCcCCCCCCCCC
Confidence 3466666666666666666666554
No 293
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=47.01 E-value=1.1e+02 Score=24.30 Aligned_cols=52 Identities=15% Similarity=0.145 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011081 406 ALDILKARVVKFGLFPT-EKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSL 458 (494)
Q Consensus 406 a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 458 (494)
+.++|. .|...|+--. ...|......+...|++.+|.++|..-++.+-.|-.
T Consensus 79 p~~if~-~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYS-YLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHH-HHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHH-HHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 445555 4444554333 345666666667777777777777777777666654
No 294
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=44.51 E-value=1.3e+02 Score=24.78 Aligned_cols=64 Identities=8% Similarity=0.083 Sum_probs=37.0
Q ss_pred HHHHHHHHHh---cCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCC
Q 011081 250 FNALMVGFYR---EGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERR-----MREAEKLWEEMRDKNV 313 (494)
Q Consensus 250 ~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~g~ 313 (494)
+.-+|+++.| ..+.+.|+-++.+|++.|..|.-..-..++.+.-.-|. +..|...++.....|.
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3445555544 36777788888888877766655555555555444433 2345555555555554
No 295
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=43.91 E-value=1.4e+02 Score=24.72 Aligned_cols=71 Identities=8% Similarity=0.092 Sum_probs=44.2
Q ss_pred HHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC-----HHHHHHHHHHHHhCCCCCCHHHH
Q 011081 285 YSVLMAVFCE---ERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGE-----MARAEEFFREMGLSGVESSSVTF 355 (494)
Q Consensus 285 ~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~~~~~~~~~~ 355 (494)
+.-+|+++.| ..+.+.|+-++-+|++.|-.|.-..-..++-+.-..|. ...|...++....-|.+--....
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~L 113 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFFL 113 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 3345666554 57888888888888888876666666666666665553 23455555555555654433333
No 296
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=43.73 E-value=1.3e+02 Score=24.52 Aligned_cols=33 Identities=9% Similarity=-0.133 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 011081 296 RRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFC 328 (494)
Q Consensus 296 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 328 (494)
.+.|.|+-++-+|++.|-.|.-..-..++-+.-
T Consensus 21 SDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsE 53 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPLYVARRLLAIASE 53 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 455555555555555554443333333333333
No 297
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=43.63 E-value=1.2e+02 Score=24.17 Aligned_cols=48 Identities=13% Similarity=0.123 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011081 335 RAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGF 383 (494)
Q Consensus 335 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 383 (494)
.+..++..+.+.|.--|...-...+....+.|.+ ....+-.++...|+
T Consensus 51 ~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI 98 (177)
T 3e3v_A 51 YISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGI 98 (177)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCC
Confidence 3444555555555443333333444444333322 22344445555555
No 298
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=42.22 E-value=60 Score=25.61 Aligned_cols=68 Identities=13% Similarity=0.044 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC
Q 011081 404 FEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK--GFEPSLEIYSAFIDGYMKEG 472 (494)
Q Consensus 404 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g 472 (494)
+.+++.+.+.+++.|++.+..= ..++..+...+..-.|.++++.+.+. +...+..|-..-++.+...|
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 3444455555556666665432 33445555555555666666666654 44445555444555555555
No 299
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=41.95 E-value=1.1e+02 Score=22.99 Aligned_cols=24 Identities=17% Similarity=0.466 Sum_probs=13.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHH
Q 011081 321 NTIIGGFCEIGEMARAEEFFREMG 344 (494)
Q Consensus 321 ~~li~~~~~~g~~~~A~~~~~~m~ 344 (494)
+.++.=|...|+.++|.+.++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 344555555555555555555553
No 300
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=41.85 E-value=93 Score=26.03 Aligned_cols=51 Identities=24% Similarity=0.260 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011081 335 RAEEFFREMGLSGVES-SSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEP 385 (494)
Q Consensus 335 ~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 385 (494)
.+.++|..|...|+-- -...|......+...|++.+|.++|+.-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4445555555554432 23345555555556666666666666655555444
No 301
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=41.14 E-value=1.5e+02 Score=24.27 Aligned_cols=62 Identities=13% Similarity=0.144 Sum_probs=40.2
Q ss_pred HHHHHHHHh---cCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCC-----HHHHHHHHHHHHhCC
Q 011081 251 NALMVGFYR---EGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERR-----MREAEKLWEEMRDKN 312 (494)
Q Consensus 251 ~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~g 312 (494)
--+|+++.+ ..+.+.|+-++.+|++.|..|.-..-..++.+.-.-|. +..|...++.....|
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 77 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVG 77 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHC
Confidence 345566654 57899999999999999977766665656655554443 234444455555544
No 302
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=41.09 E-value=1.9e+02 Score=25.60 Aligned_cols=25 Identities=8% Similarity=0.444 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHH
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMA 274 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~ 274 (494)
...+|.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4677888888999999998888864
No 303
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=41.04 E-value=82 Score=25.26 Aligned_cols=100 Identities=8% Similarity=0.089 Sum_probs=54.5
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhH---HHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHhH---HHHHH
Q 011081 252 ALMVGFYREGAFEKVEDVWVEMARLGCEPDCYS---YSVLMAVFCE-ERRMREAEKLWEEMRDKNVEHDVVA---YNTII 324 (494)
Q Consensus 252 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~---~~~li 324 (494)
+.+...+..|+.+.-.++.+.+.+.|..++... .+.|..++.. ..+.....++.+.+.+.|..++... .++.+
T Consensus 40 T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpL 119 (186)
T 3t8k_A 40 NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVF 119 (186)
T ss_dssp THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTT
T ss_pred CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHH
Confidence 344555667777766778888888887766532 3334333332 2344555677888888887665432 21222
Q ss_pred HHHHccCCH-HHHHHHHHHHHh-CCCCCC
Q 011081 325 GGFCEIGEM-ARAEEFFREMGL-SGVESS 351 (494)
Q Consensus 325 ~~~~~~g~~-~~A~~~~~~m~~-~~~~~~ 351 (494)
...+..+.. ..-.++++.+.+ .|..++
T Consensus 120 h~A~~~~~~~~~~~~iv~~Ll~~~gad~~ 148 (186)
T 3t8k_A 120 KNIFNYFVDENEMIPLYKLIFSQSGLQLL 148 (186)
T ss_dssp GGGGGCCSCHHHHHHHHHHHHTSTTCCTT
T ss_pred HHHHHcCCChhhHHHHHHHHHHhcCCCCc
Confidence 222223322 334455555665 554443
No 304
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=40.37 E-value=1.2e+02 Score=25.70 Aligned_cols=21 Identities=14% Similarity=-0.072 Sum_probs=11.5
Q ss_pred HHHHHccCCHHHHHHHHHHHH
Q 011081 324 IGGFCEIGEMARAEEFFREMG 344 (494)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~m~ 344 (494)
++.+....++++|.+++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 455555555555555555543
No 305
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=38.17 E-value=2.2e+02 Score=25.54 Aligned_cols=24 Identities=8% Similarity=0.027 Sum_probs=16.1
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHH
Q 011081 198 TCNALIWEVSRGKGVISGYEIYRE 221 (494)
Q Consensus 198 ~~~~ll~~~~~~~~~~~a~~~~~~ 221 (494)
.|.++..-|.+.+++++|.+++..
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~ 60 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS 60 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH
Confidence 345566667777888888776544
No 306
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.89 E-value=96 Score=24.12 Aligned_cols=23 Identities=17% Similarity=0.498 Sum_probs=12.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHH
Q 011081 321 NTIIGGFCEIGEMARAEEFFREM 343 (494)
Q Consensus 321 ~~li~~~~~~g~~~~A~~~~~~m 343 (494)
+.++.=|...|+.++|...++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 34445555555555555555555
No 307
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=37.78 E-value=2.2e+02 Score=25.25 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 356 EHLVNGYCRAGDVDSAILVYNDMC 379 (494)
Q Consensus 356 ~~li~~~~~~g~~~~a~~~~~~m~ 379 (494)
..++.-|...|+.++|.+.++++.
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC
Confidence 456666767777777777777764
No 308
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=36.58 E-value=1.5e+02 Score=23.03 Aligned_cols=63 Identities=11% Similarity=0.199 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCC--HHHHHHHHHHHHhCC
Q 011081 249 TFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERR--MREAEKLWEEMRDKN 312 (494)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g 312 (494)
..+.++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+...|
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~ 75 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 75 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 3566788888888888888888887522111 22333444444444322 345566666666554
No 309
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=36.13 E-value=1.7e+02 Score=23.43 Aligned_cols=110 Identities=10% Similarity=0.011 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
|...-...+..+.+.|..+. ...+.++.. .++...-...+.++.+.+..+.. ..+..+.. .++..+-...+.
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~ 98 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERA-VEPLIKALK---DEDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAAV 98 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhH-HHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHHH
Confidence 33344444444445454322 222223332 23444444455555555543222 22222222 234444455555
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011081 326 GFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGD 367 (494)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 367 (494)
++.+.|+.+ +...+..+.. .++...-...+.++.+.++
T Consensus 99 aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 99 ALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp HHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTC
T ss_pred HHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCC
Confidence 555555432 2222223322 3344444444444444444
No 310
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=35.52 E-value=2.9e+02 Score=26.01 Aligned_cols=54 Identities=17% Similarity=0.154 Sum_probs=30.8
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCC
Q 011081 329 EIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGD-----VDSAILVYNDMCRKG 382 (494)
Q Consensus 329 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~~ 382 (494)
+.++.+.|+..+.+|.+.|..|....-..++.+.-.-|. ...|...++....-|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVG 325 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhC
Confidence 346777777777777777766655555555555544443 223444455554555
No 311
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=35.23 E-value=1.1e+02 Score=23.35 Aligned_cols=60 Identities=13% Similarity=0.047 Sum_probs=34.4
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011081 413 RVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGN 473 (494)
Q Consensus 413 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 473 (494)
.+++.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|-..-++.+...|-
T Consensus 12 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 4555666666543 23444554555556677777777666545555555555566655553
No 312
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=35.19 E-value=1.3e+02 Score=22.13 Aligned_cols=43 Identities=16% Similarity=0.027 Sum_probs=29.2
Q ss_pred HHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhc
Q 011081 182 DIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFG 224 (494)
Q Consensus 182 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 224 (494)
.+|+.+.+..+.|++...-.-+......++++.|.+++..+..
T Consensus 47 ~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 47 LLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566666667766655444444455667899999999988743
No 313
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=35.01 E-value=1.4e+02 Score=24.45 Aligned_cols=19 Identities=0% Similarity=-0.053 Sum_probs=10.2
Q ss_pred HHHHHcCCChhHHHHHHHH
Q 011081 203 IWEVSRGKGVISGYEIYRE 221 (494)
Q Consensus 203 l~~~~~~~~~~~a~~~~~~ 221 (494)
+...+..|+.+-+..+++.
T Consensus 41 L~~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 41 LHIAALYDNLEAAMVLMEA 59 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3344455666655555544
No 314
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=33.55 E-value=1.1e+02 Score=23.56 Aligned_cols=61 Identities=15% Similarity=0.101 Sum_probs=32.3
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011081 412 ARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGN 473 (494)
Q Consensus 412 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 473 (494)
+.+++.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 16 ~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 16 MSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 34555665554432 23445555555556667777777665545555555555555555553
No 315
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=33.42 E-value=1.8e+02 Score=22.93 Aligned_cols=51 Identities=8% Similarity=0.028 Sum_probs=32.1
Q ss_pred cCCHhHHHHHHHHHHHcCCCc--CHhHHHHHHH-H-----HHhcCCHHHHHHHHHHHHh
Q 011081 260 EGAFEKVEDVWVEMARLGCEP--DCYSYSVLMA-V-----FCEERRMREAEKLWEEMRD 310 (494)
Q Consensus 260 ~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~m~~ 310 (494)
.|++-+|.++++..-...-.+ +...|..||. . ..+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 377888888887776654344 4455666666 2 2345777777777766643
No 316
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=33.40 E-value=1.8e+02 Score=22.93 Aligned_cols=12 Identities=17% Similarity=0.243 Sum_probs=6.3
Q ss_pred CCHHHHHHHHHH
Q 011081 401 RRVFEALDILKA 412 (494)
Q Consensus 401 ~~~~~a~~~~~~ 412 (494)
|++.+|-++++.
T Consensus 46 g~yfeaHEvLEe 57 (161)
T 2ijq_A 46 GEFHESHDCFED 57 (161)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCchHHHHHHHH
Confidence 555555555553
No 317
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=32.62 E-value=1.5e+02 Score=22.65 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=15.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc
Q 011081 291 VFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCE 329 (494)
Q Consensus 291 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 329 (494)
.+...+..-.|.++++.+.+.+...+..|..--++.+..
T Consensus 30 ~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 68 (145)
T 2fe3_A 30 YLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRE 68 (145)
T ss_dssp HHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHH
Confidence 333333334444444444444333333333333333333
No 318
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=32.43 E-value=2.7e+02 Score=24.80 Aligned_cols=41 Identities=12% Similarity=0.059 Sum_probs=28.6
Q ss_pred HHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011081 413 RVVKFGLFPTEK--SYMFLIKGLCEEGKMEEALKVQAEMVGKG 453 (494)
Q Consensus 413 ~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 453 (494)
.+....+.|... +...-|....+.+++..|..+-+++++.+
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 344445555433 34566777888999999999999999764
No 319
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=32.35 E-value=21 Score=30.49 Aligned_cols=55 Identities=9% Similarity=0.003 Sum_probs=33.1
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCcCHhH-------HHHHHHHHH--hcCCHHHHHHHHHHH
Q 011081 254 MVGFYREGAFEKVEDVWVEMARLGCEPDCYS-------YSVLMAVFC--EERRMREAEKLWEEM 308 (494)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-------~~~li~~~~--~~g~~~~a~~~~~~m 308 (494)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 4445667888888888887777665555332 234443332 557776666666554
No 320
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=32.06 E-value=1.7e+02 Score=26.26 Aligned_cols=63 Identities=6% Similarity=-0.008 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCC
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEE-RRMREAEKLWEEMRDKNV 313 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~ 313 (494)
...++.-|...|+.++|.+.++++...... ...+...+..++-+. ..-+.+..++..+.+.|+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 567889999999999999999888532211 122223333333221 123455666777776654
No 321
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=31.32 E-value=53 Score=26.36 Aligned_cols=15 Identities=13% Similarity=0.240 Sum_probs=8.0
Q ss_pred HHHHHHHHhCCCCCC
Q 011081 443 LKVQAEMVGKGFEPS 457 (494)
Q Consensus 443 ~~~~~~m~~~~~~p~ 457 (494)
.++.+.+.+.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 445555555555554
No 322
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=30.61 E-value=2.1e+02 Score=22.99 Aligned_cols=79 Identities=9% Similarity=0.059 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
+...-...+..+.+.|.. ++...+.++.. .+|...-...+.++.+.++.+. ...+..+.+ .++..+-...+.
T Consensus 32 ~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~ 103 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAAV 103 (211)
T ss_dssp SHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHHH
Confidence 333334444445555542 23333333332 2344444445555555554322 222222222 234444444455
Q ss_pred HHHccCC
Q 011081 326 GFCEIGE 332 (494)
Q Consensus 326 ~~~~~g~ 332 (494)
++.+.|+
T Consensus 104 aL~~~~~ 110 (211)
T 3ltm_A 104 ALGQIGD 110 (211)
T ss_dssp HHHHHCC
T ss_pred HHHHhCc
Confidence 5555444
No 323
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=30.08 E-value=13 Score=31.82 Aligned_cols=190 Identities=7% Similarity=-0.066 Sum_probs=94.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-------HHHHHHHHHH--ccCCHHHHHHHHHHHHhCC---------C-
Q 011081 288 LMAVFCEERRMREAEKLWEEMRDKNVEHDVV-------AYNTIIGGFC--EIGEMARAEEFFREMGLSG---------V- 348 (494)
Q Consensus 288 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-------~~~~li~~~~--~~g~~~~A~~~~~~m~~~~---------~- 348 (494)
.+...++.|+.+....+++.+.+.|..++.. -++.|..+.. +.|+.+-+..+++.-...+ +
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 3455667899998888888887776655533 3355555542 5688777777776543311 0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh----------------HHHHHHHHHhcCCHHHHHHHHHH
Q 011081 349 ESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGST----------------IEVLIGELCDKRRVFEALDILKA 412 (494)
Q Consensus 349 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~----------------~~~li~~~~~~~~~~~a~~~~~~ 412 (494)
..|..-++.| ...+..|+.+- .+.+++.|..++... -...+...+..|+.+-+..+++
T Consensus 88 ~~d~~g~t~L-~~A~~~g~~~~----v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~- 161 (260)
T 3jxi_A 88 DVYYRGQTAL-HIAIERRCKHY----VELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE- 161 (260)
T ss_dssp CSSEESBCHH-HHHHHTTCHHH----HHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH-
T ss_pred ccccCCCCHH-HHHHHcCCHHH----HHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh-
Confidence 0111222333 33445677654 444455666555432 2233444456777654433332
Q ss_pred HHHh--CCCCCC---HHHHHHHHHHHHhcC-C---HHHHHHHHHHHHhCCCC----------CCHHHHHHHHHHHHhcCC
Q 011081 413 RVVK--FGLFPT---EKSYMFLIKGLCEEG-K---MEEALKVQAEMVGKGFE----------PSLEIYSAFIDGYMKEGN 473 (494)
Q Consensus 413 ~~~~--~~~~p~---~~~~~~li~~~~~~g-~---~~~A~~~~~~m~~~~~~----------p~~~~~~~li~~~~~~g~ 473 (494)
. .|..++ ..-.+.|..++.... . .+...++++.+++.|.. .|..-.+ -+...++.|+
T Consensus 162 ---~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~t-pL~~A~~~g~ 237 (260)
T 3jxi_A 162 ---NGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLS-PLMMAAKTGK 237 (260)
T ss_dssp ---CSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCC-HHHHHHHTTC
T ss_pred ---ccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCC-HHHHHHHcCC
Confidence 1 344433 222344444443222 1 22223444444443322 2222223 3344456788
Q ss_pred HHHHHHHHHHHHHc
Q 011081 474 VEMATMLRKEMFEN 487 (494)
Q Consensus 474 ~~~a~~~~~~m~~~ 487 (494)
.+-+..+++.-...
T Consensus 238 ~~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 238 IGIFQHIIRREIAD 251 (260)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCc
Confidence 77666666554443
No 324
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=29.92 E-value=3.5e+02 Score=25.37 Aligned_cols=46 Identities=11% Similarity=0.042 Sum_probs=31.7
Q ss_pred HHHHHHH---hcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC
Q 011081 287 VLMAVFC---EERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGE 332 (494)
Q Consensus 287 ~li~~~~---~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 332 (494)
.+++++. +.++.+.|+.++.+|.+.|..|....-..++.++-..|.
T Consensus 257 d~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~ 305 (447)
T 3pvs_A 257 DLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGN 305 (447)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccC
Confidence 3455544 357889999999999998876666665666666555553
No 325
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=29.87 E-value=1.3e+02 Score=23.07 Aligned_cols=58 Identities=7% Similarity=0.002 Sum_probs=32.9
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011081 413 RVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEG 472 (494)
Q Consensus 413 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 472 (494)
.+++.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|-..-++.+...|
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 4556666666542 23344444444 4567777777776655556555555555555555
No 326
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=29.81 E-value=73 Score=29.65 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=16.3
Q ss_pred HHHHHHhCCCCcChHh--HHHHHHHHHcCCChhHHHHHHH
Q 011081 183 IVRMLMSRGLSVKVST--CNALIWEVSRGKGVISGYEIYR 220 (494)
Q Consensus 183 ~~~~m~~~g~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~ 220 (494)
+++.+.+.|..++... ..+.+...+..|..+-+..+++
T Consensus 29 ~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 68 (437)
T 1n11_A 29 IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ 68 (437)
T ss_dssp HHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 3344444555544321 1123333444566555544444
No 327
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=29.30 E-value=4e+02 Score=28.02 Aligned_cols=48 Identities=21% Similarity=0.147 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcC
Q 011081 425 SYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSL----EIYSAFIDGYMKEG 472 (494)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g 472 (494)
-|..++..+-+.+.++.+.++-+..++.--.-|. ..|..+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 6788888899999999999888888865222233 35666777666544
No 328
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=28.33 E-value=5.3e+02 Score=26.93 Aligned_cols=88 Identities=7% Similarity=0.042 Sum_probs=40.4
Q ss_pred HHHHHHHhcCC---HhHHHHHHHHHHHcC----CCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHH
Q 011081 252 ALMVGFYREGA---FEKVEDVWVEMARLG----CEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTII 324 (494)
Q Consensus 252 ~li~~~~~~g~---~~~a~~~~~~m~~~g----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 324 (494)
.++...|..|. .++|.+.|++....+ +.||.. ..+...-.+.|.-++-..+++...+.. +..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHH
Confidence 34445555554 334555555544321 334432 222222334455444444555554432 333344555
Q ss_pred HHHHccCCHHHHHHHHHHHH
Q 011081 325 GGFCEIGEMARAEEFFREMG 344 (494)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~m~ 344 (494)
.+++...+.+...++++...
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l 785 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTL 785 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTT
T ss_pred HHhCCCCCHHHHHHHHHHHh
Confidence 55555555555555555544
No 329
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=27.86 E-value=2.8e+02 Score=23.53 Aligned_cols=209 Identities=10% Similarity=0.049 Sum_probs=95.5
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCC----HHHHHHHHHH-HHhCCCCCCHhHHHHHHHHH
Q 011081 253 LMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERR----MREAEKLWEE-MRDKNVEHDVVAYNTIIGGF 327 (494)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----~~~a~~~~~~-m~~~g~~~~~~~~~~li~~~ 327 (494)
.+.++.+.|. .++...+..+.+ .++...-...+.++.+.|. ......++.. +.. .++..+-...+.++
T Consensus 43 A~~~L~~~~~-~~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~---d~~~~vr~~a~~aL 115 (280)
T 1oyz_A 43 SARVLQLRGG-QDAVRLAIEFCS---DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN---DKSACVRATAIEST 115 (280)
T ss_dssp HHHHHHHHCC-HHHHHHHHHHHT---CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH---CSCHHHHHHHHHHH
T ss_pred HHHHHHccCC-chHHHHHHHHHc---CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 3444444443 233444444433 2344444455555555553 2222333332 222 23555555555555
Q ss_pred HccCC-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-
Q 011081 328 CEIGE-----MARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKR- 401 (494)
Q Consensus 328 ~~~g~-----~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~- 401 (494)
.+.+. ...+...+..+.. .++...-...+.++...|+.+ +...+..+.+. ++..+-...+.++...+
T Consensus 116 ~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~ 188 (280)
T 1oyz_A 116 AQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVINDKA-TIPLLINLLKD---PNGDVRNWAAFAININKY 188 (280)
T ss_dssp HHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC---C-CHHHHHHHHTC---SSHHHHHHHHHHHHHHTC
T ss_pred HHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHhhcc
Confidence 55441 2344444444443 455555556666666666532 44444444432 34444444445555443
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011081 402 RVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLR 481 (494)
Q Consensus 402 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 481 (494)
....+...+...+. .++...-...+.++.+.|+.+....+.. +.+. ++ +-...+.++.+.|. ..+...+
T Consensus 189 ~~~~~~~~L~~~l~----d~~~~vR~~A~~aL~~~~~~~~~~~L~~-~l~d---~~--vr~~a~~aL~~i~~-~~~~~~L 257 (280)
T 1oyz_A 189 DNSDIRDCFVEMLQ----DKNEEVRIEAIIGLSYRKDKRVLSVLCD-ELKK---NT--VYDDIIEAAGELGD-KTLLPVL 257 (280)
T ss_dssp CCHHHHHHHHHHTT----CSCHHHHHHHHHHHHHTTCGGGHHHHHH-HHTS---SS--CCHHHHHHHHHHCC-GGGHHHH
T ss_pred CcHHHHHHHHHHhc----CCCHHHHHHHHHHHHHhCCHhhHHHHHH-HhcC---cc--HHHHHHHHHHhcCc-hhhhHHH
Confidence 22344444443332 2455555666677777775433333333 3322 22 22334555666665 3455555
Q ss_pred HHHHH
Q 011081 482 KEMFE 486 (494)
Q Consensus 482 ~~m~~ 486 (494)
.++.+
T Consensus 258 ~~~l~ 262 (280)
T 1oyz_A 258 DTMLY 262 (280)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 55554
No 330
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=27.71 E-value=1.8e+02 Score=25.98 Aligned_cols=218 Identities=8% Similarity=-0.075 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcc
Q 011081 251 NALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEI 330 (494)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 330 (494)
.+.+...+..|+.+-+..+++. ...+......-.+.+...+..|+. ++.+.+.+.|..++...-...+...+..
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~g~t~L~~A~~~ 94 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIET--GVSPTIQNRFGCTALHLACKFGCV----DTAKYLASVGEVHSLWHGQKPIHLAVMA 94 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHCCH----HHHHHHHHHCCCCCCBTTBCHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCcHHHHHHHcCCH----HHHHHHHHCCCCccccCCCCHHHHHHHc
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHH-------------------HHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCChhh
Q 011081 331 GEMARAEEFFREMGLSGVESSSVTF-------------------EHLVNGYCRAG--DVDSAILVYNDMCRKGFEPEGST 389 (494)
Q Consensus 331 g~~~~A~~~~~~m~~~~~~~~~~~~-------------------~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~ 389 (494)
|+.+-+..+++.....|..++.... .+.+...+..| +.+-+..+++. ..++......
T Consensus 95 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~--ga~~~~~d~~ 172 (364)
T 3ljn_A 95 NKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL--GASPTAKDKA 172 (364)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH--TCCTTCCCTT
T ss_pred CCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc--CCCCcccCCC
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHH
Q 011081 390 IEVLIGELCDKRRVFEALDILKARVVKFG-----LFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS--LEIYS 462 (494)
Q Consensus 390 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~ 462 (494)
-...+...+..|+.+-+..+++ .... +......-.+.+...+..|+.+ +.+.+++.|..++ ...-.
T Consensus 173 g~t~L~~A~~~g~~~~v~~Ll~---~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~gad~~~~d~~g~ 245 (364)
T 3ljn_A 173 DETPLMRAMEFRNREALDLMMD---TVPSKSSLRLDYANKQGNSHLHWAILINWED----VAMRFVEMGIDVNMEDNEHT 245 (364)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHH---HCSCSSSCCTTCCCTTCCCTTHHHHTTTCHH----HHHHHHTTTCCTTCCCTTSC
T ss_pred CCCHHHHHHHcCCHHHHHHHHh---cccccccccccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCC
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 011081 463 AFIDGYMKEGNVEMATMLRKE 483 (494)
Q Consensus 463 ~li~~~~~~g~~~~a~~~~~~ 483 (494)
+-+...+..|+.+-+..+++.
T Consensus 246 tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 246 VPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp CHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHhChHHHHHHHHHc
No 331
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=27.69 E-value=2.6e+02 Score=23.18 Aligned_cols=24 Identities=13% Similarity=0.282 Sum_probs=18.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 288 LMAVFCEERRMREAEKLWEEMRDK 311 (494)
Q Consensus 288 li~~~~~~g~~~~a~~~~~~m~~~ 311 (494)
.+-.|.+.|.+++|.+++++....
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHhcchHHHHHHHHHHhcC
Confidence 445678888888888888887654
No 332
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=27.67 E-value=83 Score=20.36 Aligned_cols=36 Identities=17% Similarity=0.067 Sum_probs=15.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 011081 321 NTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEH 357 (494)
Q Consensus 321 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 357 (494)
+.++..+++..-.++++..+++..+.| ..+...|.-
T Consensus 6 ~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK 41 (65)
T 2f6m_A 6 NQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVK 41 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 334444444444444444444444444 333333333
No 333
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=27.31 E-value=58 Score=27.01 Aligned_cols=207 Identities=9% Similarity=-0.022 Sum_probs=97.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCcCHhH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---hHHHHHHHHHH
Q 011081 254 MVGFYREGAFEKVEDVWVEMARLGCEPDCYS--YSVLMAVFCEERRMREAEKLWEEMRDKNVEHDV---VAYNTIIGGFC 328 (494)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~ 328 (494)
+...+..|+.+- ++.+.+.|..++... -.+.+...+..|+.+.+.. +.+.|..++. ...+ .+...+
T Consensus 15 L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~----Ll~~g~~~~~~~~~g~t-~L~~A~ 85 (237)
T 3b7b_A 15 LHAAAEAGHVDI----CHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY----LIKAGALVDPKDAEGST-CLHLAA 85 (237)
T ss_dssp HHHHHHHTCHHH----HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH----HHTTTCCCCCCCTTSCC-HHHHHH
T ss_pred HHHHHHcCcHHH----HHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHH----HHhCCCCCCCCCCCCCc-HHHHHH
Confidence 344556677654 444455554443321 1234445566777665444 4455544332 2222 333445
Q ss_pred ccCCHHHHHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh--HHHHHHHHHhcCC
Q 011081 329 EIGEMARAEEFFREMGLSG-VES---SSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGST--IEVLIGELCDKRR 402 (494)
Q Consensus 329 ~~g~~~~A~~~~~~m~~~~-~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~~~ 402 (494)
..|+.+-+. .+.+.| ..+ +....+.+ ...+..|+.+ +++.+.+.|..++... -...+...+..|.
T Consensus 86 ~~~~~~~~~----~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 156 (237)
T 3b7b_A 86 KKGHYEVVQ----YLLSNGQMDVNCQDDGGWTPM-IWATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGC 156 (237)
T ss_dssp HTTCHHHHH----HHHTTTCCCTTCCCTTSCCHH-HHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCC
T ss_pred HcCCHHHHH----HHHhCCCCCcccCCCCCCCHH-HHHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCC
Confidence 567665444 344443 222 22222333 3334556654 4455555665443221 1123334455666
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHH
Q 011081 403 VFEALDILKARVVKFGLFPTEKS--YMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLE--IYSAFIDGYMKEGNVEMAT 478 (494)
Q Consensus 403 ~~~a~~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~a~ 478 (494)
.+-+..+ .+.|..++... -.+.+...++.|+.+-+ +.+.+.|..++.. .-.+-+......|+...+.
T Consensus 157 ~~~~~~L-----l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~ 227 (237)
T 3b7b_A 157 VDIAEIL-----LAAKCDLHAVNIHGDSPLHIAARENRYDCV----VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSAL 227 (237)
T ss_dssp HHHHHHH-----HTTTCCTTCCCTTCCCHHHHHHHTTCHHHH----HHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHH
T ss_pred HHHHHHH-----HHcCCCCCCcCCCCCCHHHHHHHhCCHhHH----HHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHH
Confidence 5543333 33444443211 11233344566776544 3444455554321 1123445556778888888
Q ss_pred HHHHHHHHc
Q 011081 479 MLRKEMFEN 487 (494)
Q Consensus 479 ~~~~~m~~~ 487 (494)
++.+.+.+.
T Consensus 228 ~l~~~l~ds 236 (237)
T 3b7b_A 228 QMSKALQDS 236 (237)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHhhcc
Confidence 888888763
No 334
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=27.13 E-value=2e+02 Score=21.51 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHH
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMA 274 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~ 274 (494)
.+.++.-|...|+.++|.+.++++.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3445555555555555555555553
No 335
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=27.13 E-value=1.2e+02 Score=24.73 Aligned_cols=180 Identities=12% Similarity=0.117 Sum_probs=83.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---hHHHHHHHHHHc
Q 011081 253 LMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDV---VAYNTIIGGFCE 329 (494)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~ 329 (494)
.+...++.|+.+....++..-...--.+|..-++ .+...+..|+.+-+.. +.+.|..++. .-++.+ ...+.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~g~t~L-~~A~~ 82 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRT-ALHWACSAGHTEIVEF----LLQLGVPVNDKDDAGWSPL-HIAAS 82 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCC-HHHHHHHHTCHHHHHH----HHHTTCCSCCCCTTSCCHH-HHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCC-HHHHHHHcCcHHHHHH----HHHhCCCCCCcCCCCCCHH-HHHHH
Confidence 4566677888888887776533211122333333 3445566677655444 4445544432 223333 33345
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh--HHHHHHHHHhcCCHH
Q 011081 330 IGEMARAEEFFREMGLSGVESSS---VTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGST--IEVLIGELCDKRRVF 404 (494)
Q Consensus 330 ~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~~~~~ 404 (494)
.|+.+ +++.+.+.|..++. .-.+.+ ...+..|+.+- ++.+.+.|..++... -...+...+..|+.+
T Consensus 83 ~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 153 (231)
T 3aji_A 83 AGXDE----IVKALLVKGAHVNAVNQNGCTPL-HYAASKNRHEI----AVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153 (231)
T ss_dssp HTCHH----HHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred cCHHH----HHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHH----HHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence 56654 34444455544432 223333 33445566553 344445565544321 112334445566655
Q ss_pred HHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011081 405 EALDILKARVVKFGLFPTE---KSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS 457 (494)
Q Consensus 405 ~a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 457 (494)
-+..++ +.|..++. .-.+. +...++.|+.+-+ +.+.+.|..++
T Consensus 154 ~v~~Ll-----~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v----~~Ll~~ga~~~ 199 (231)
T 3aji_A 154 MVHILL-----FYKASTNIQDTEGNTP-LHLACDEERVEEA----KFLVTQGASIY 199 (231)
T ss_dssp HHHHHH-----HTTCCSCCCCTTSCCH-HHHHHHTTCHHHH----HHHHHTTCCSC
T ss_pred HHHHHH-----hcCCCccccCCCCCCH-HHHHHHCCCHHHH----HHHHHCCCCCC
Confidence 443333 23443332 11222 3334456665443 34444555554
No 336
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=25.72 E-value=1.5e+02 Score=22.24 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011081 334 ARAEEFFREMGLSGVESSSVTFEHLVNGYCRAG 366 (494)
Q Consensus 334 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 366 (494)
-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 35 ~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 35 MSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp BCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 334444444444433333333333334444433
No 337
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=25.43 E-value=2.2e+02 Score=23.18 Aligned_cols=53 Identities=13% Similarity=-0.041 Sum_probs=26.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 431 KGLCEEGKMEEALKVQAEMVGKGFEP---------SLEIYSAFIDGYMKEGNVEMATMLRKEM 484 (494)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~~~~p---------~~~~~~~li~~~~~~g~~~~a~~~~~~m 484 (494)
...+..|+.+-+..+++.+.+.|..+ |..-.+. +...++.|+.+-+..+++.-
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp-l~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP-FKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH-HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH-HHHHHHcCCHHHHHHHHhcC
Confidence 33455667776666666666665432 2222222 33344556655555444443
No 338
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=24.85 E-value=1.2e+02 Score=18.30 Aligned_cols=43 Identities=12% Similarity=0.172 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHH
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYRE 221 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 221 (494)
+.+|+++++.+.+.|--|+... .+| .--.+..-.....++|+.
T Consensus 9 v~RaiELle~lq~sgevp~~KL-~aL-q~VLqSdF~~aVREVYEh 51 (53)
T 1zl8_A 9 VQRILELMEHVQKTGEVNNAKL-ASL-QQVLQSEFFGAVREVYET 51 (53)
T ss_dssp HHHHHHHHHHHGGGSSSTHHHH-HHH-HHHHSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCcHHH-HHH-HHHHHHHHHHHHHHHHHH
Confidence 8899999999999886655432 222 222233334455566654
No 339
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=24.76 E-value=3e+02 Score=22.84 Aligned_cols=50 Identities=8% Similarity=0.064 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011081 334 ARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFE 384 (494)
Q Consensus 334 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 384 (494)
+.+..+++.+.+.|.--|..--...+....+.+.+ ....+-.++...|+.
T Consensus 93 e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~ 142 (221)
T 3d5l_A 93 EFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIG 142 (221)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCC
Confidence 34555566666666544444334444444331111 244555566666664
No 340
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=24.70 E-value=1.4e+02 Score=22.75 Aligned_cols=30 Identities=7% Similarity=0.097 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 011081 299 REAEKLWEEMRDKNVEHDVVAYNTIIGGFC 328 (494)
Q Consensus 299 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 328 (494)
-.|.++++.+.+.+...+..|..--++.+.
T Consensus 34 ~ta~ei~~~l~~~~~~is~~TVYR~L~~L~ 63 (145)
T 3eyy_A 34 ATPDDILGEVRKTASGINISTVYRTLELLE 63 (145)
T ss_dssp BCHHHHHHHHHTTCTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhCCCCCHhHHHHHHHHHH
Confidence 344444444444433333333333333333
No 341
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=24.53 E-value=58 Score=20.62 Aligned_cols=29 Identities=14% Similarity=0.284 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHcCCCcCHhHHHHHHHHH
Q 011081 264 EKVEDVWVEMARLGCEPDCYSYSVLMAVF 292 (494)
Q Consensus 264 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 292 (494)
++|.+.|.+|++..-.+...||.-.|...
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45556665555443233344555555555
No 342
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=24.33 E-value=1e+02 Score=24.63 Aligned_cols=14 Identities=29% Similarity=0.275 Sum_probs=7.1
Q ss_pred HHHHHHHHHccccc
Q 011081 478 TMLRKEMFENQVRQ 491 (494)
Q Consensus 478 ~~~~~~m~~~~~~p 491 (494)
.++.+.+++.|..+
T Consensus 158 ~~~v~~Ll~~ga~~ 171 (201)
T 3hra_A 158 QDIVKLLMENGADQ 171 (201)
T ss_dssp HHHHHHHHHTTCCT
T ss_pred HHHHHHHHHCCCCC
Confidence 44555555555443
No 343
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=23.94 E-value=2.1e+02 Score=21.41 Aligned_cols=58 Identities=17% Similarity=0.154 Sum_probs=26.4
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011081 414 VVKFGLFPTEKSYMFLIKGLCEEG-KMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEG 472 (494)
Q Consensus 414 ~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 472 (494)
+++.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 344455544432 22334444433 44455666666655544444444444444444443
No 344
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.55 E-value=5e+02 Score=24.98 Aligned_cols=66 Identities=12% Similarity=0.117 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CcCH--hHH-HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGC-EPDC--YSY-SVLMAVFCEERRMREAEKLWEEMRDK 311 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~--~~~-~~li~~~~~~g~~~~a~~~~~~m~~~ 311 (494)
-...+|.+++.|...+.++.|..+.....---. .++. .+| ..+...+.-.+++.+|.+.+....+.
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 467899999999999999999999998752100 1111 222 23456677789999999999988765
No 345
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=23.46 E-value=3.9e+02 Score=23.73 Aligned_cols=95 Identities=13% Similarity=0.184 Sum_probs=55.7
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCC--CCH---HHHHHHHHHHH------------hc-C-----CHHHHHHHHHHHHhCC
Q 011081 397 LCDKRRVFEALDILKARVVKFGLF--PTE---KSYMFLIKGLC------------EE-G-----KMEEALKVQAEMVGKG 453 (494)
Q Consensus 397 ~~~~~~~~~a~~~~~~~~~~~~~~--p~~---~~~~~li~~~~------------~~-g-----~~~~A~~~~~~m~~~~ 453 (494)
+...|++.+|+..|++.+..-.+. -+. .-...+|..|. +. + +..+..++-..+-...
T Consensus 112 ~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELAAYFT~c~ 191 (320)
T 3mkr_B 112 LTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMAAYFTHSN 191 (320)
T ss_dssp HHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHHHHHTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHHHhccCC
Confidence 356889999999988766654211 111 11122222111 11 1 2234455555555555
Q ss_pred CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccccc
Q 011081 454 FEPS--LEIYSAFIDGYMKEGNVEMATMLRKEMFENQVRQ 491 (494)
Q Consensus 454 ~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 491 (494)
+.|. .-+...-+....+.+++..|-.+.+++++.++.+
T Consensus 192 Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~ 231 (320)
T 3mkr_B 192 LQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKP 231 (320)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCH
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH
Confidence 5554 3345556667788899999999999999887654
No 346
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=23.14 E-value=5.3e+02 Score=27.13 Aligned_cols=49 Identities=18% Similarity=0.133 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcC
Q 011081 318 VAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSS----VTFEHLVNGYCRAG 366 (494)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g 366 (494)
.-|..++..+-+.+.++.+.++-+...+.--.-|. ..|+.+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 46788889999999999988888877754212222 35677777766554
No 347
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=23.12 E-value=4.5e+02 Score=24.27 Aligned_cols=26 Identities=8% Similarity=-0.041 Sum_probs=13.4
Q ss_pred HHHHHHhcCChhcHHHHHHHHHHHHh
Q 011081 164 LIKCCLEVKNIEKIETCVDIVRMLMS 189 (494)
Q Consensus 164 li~~~~~~~~~~~~~~a~~~~~~m~~ 189 (494)
++...|..|..+..++|.+.|+....
T Consensus 203 ~l~~ac~~g~~~c~~~A~~~f~~~~~ 228 (419)
T 3rjo_A 203 LLLLACVHNYQPCVQRAEGYFRKWKE 228 (419)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 44444555554445555555555543
No 348
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=23.12 E-value=1.6e+02 Score=25.33 Aligned_cols=205 Identities=9% Similarity=0.001 Sum_probs=100.7
Q ss_pred cCCHhHHHHHHHHHHHcCC-CcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHH
Q 011081 260 EGAFEKVEDVWVEMARLGC-EPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEE 338 (494)
Q Consensus 260 ~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 338 (494)
..+..+..+++.. .++ ..|..-++ .+...+..|+.+.+..+++ .|..++..--.+.+...+..|+.+-+..
T Consensus 9 ~~~~~~v~~lL~~---~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v~~ 80 (285)
T 3kea_A 9 TWKSKQLKSFLSS---KDTFKADVHGHS-ASYYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIVKI 80 (285)
T ss_dssp GCCHHHHHHHHHS---TTTTCCCTTSCC-HHHHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHHHH
T ss_pred hcCHHHHHHHHHh---CCCCccCCCCCC-HHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 4455566655543 232 22333333 4555667788776655544 4443333222334445566777665444
Q ss_pred HHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHH
Q 011081 339 FFREMGLSGVESSS---VTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGST---IEVLIGELCDKRRVFEALDILKA 412 (494)
Q Consensus 339 ~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~~~~~~a~~~~~~ 412 (494)
+ .+.|..++. .-++.|. ..+..|+.+-+..++ +.|..++... +...+...+..|..+-+..+++
T Consensus 81 L----l~~ga~~~~~d~~g~t~L~-~A~~~g~~~~v~~Ll----~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~- 150 (285)
T 3kea_A 81 L----LFSGLDDSQFDDKGNTALY-YAVDSGNMQTVKLFV----KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLS- 150 (285)
T ss_dssp H----HHTTCCTTCCCTTSCCHHH-HHHHTTCHHHHHHHH----HHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHT-
T ss_pred H----HHCCCCCCCcCCCCCcHHH-HHHHcCCHHHHHHHH----hcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHh-
Confidence 4 445554432 2233343 345667765444444 4455444322 1344555566777654443332
Q ss_pred HHHhCCCCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 413 RVVKFGLFP-TE-KSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 413 ~~~~~~~~p-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
.|..+ +. .-.+. +...+..|..+-+.-+++.-.+-.. .|..-++..+...+..|+. ++.+.+++.|..
T Consensus 151 ----~g~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad 220 (285)
T 3kea_A 151 ----EIPSTFDLAILLSC-IHITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDI----EMLQALFKYDIN 220 (285)
T ss_dssp ----TSCTTCCCSTHHHH-HHHHHHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBC
T ss_pred ----CCCccccccCCccH-HHHHHHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCH----HHHHHHHHcCCC
Confidence 33222 22 33344 4455677888877777766543322 1222223334444556664 455556666766
Q ss_pred cc
Q 011081 491 QE 492 (494)
Q Consensus 491 pd 492 (494)
++
T Consensus 221 ~~ 222 (285)
T 3kea_A 221 IY 222 (285)
T ss_dssp ST
T ss_pred CC
Confidence 54
No 349
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=22.98 E-value=1.7e+02 Score=19.38 Aligned_cols=30 Identities=23% Similarity=0.210 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 011081 370 SAILVYNDMCRKGFEPEGSTIEVLIGELCD 399 (494)
Q Consensus 370 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 399 (494)
.+.++++.+.+.+...+..|....+..+..
T Consensus 35 s~~el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 35 SAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp CHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 344444444444333333444444443333
No 350
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.75 E-value=5.2e+02 Score=24.87 Aligned_cols=61 Identities=11% Similarity=0.078 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh------HHH-HHHHHHHccCCHHHHHHHHHHHHhC
Q 011081 283 YSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVV------AYN-TIIGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 283 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~------~~~-~li~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
..+|.+++.|...+.++.|..+.....- +.+.. .|. -+...+.-.+++.+|.+.+......
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~f---P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEY---PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCS---CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcC---CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4456666667777777777777666541 11111 111 1233444566666776666666543
No 351
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=22.28 E-value=1.7e+02 Score=21.38 Aligned_cols=11 Identities=36% Similarity=0.449 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 011081 333 MARAEEFFREM 343 (494)
Q Consensus 333 ~~~A~~~~~~m 343 (494)
+.+|+.-+++.
T Consensus 4 ~~~al~~L~e~ 14 (119)
T 1wty_A 4 LARAVERLKAA 14 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 352
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.28 E-value=1.7e+02 Score=22.47 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011081 335 RAEEFFREMGLSGVESSSVTFEHLVNGYCRAG 366 (494)
Q Consensus 335 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 366 (494)
.|.++++.+.+.+...+..|..--+..+...|
T Consensus 35 sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 35 SAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34444444444333333333333334444443
No 353
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=21.61 E-value=1.7e+02 Score=18.88 Aligned_cols=44 Identities=11% Similarity=0.033 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHh
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCE 294 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 294 (494)
++-++..+++..-+++++..+++..+.| ..+..+|---++.+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4556666666666777777777777776 4466666655555554
No 354
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=21.24 E-value=2.5e+02 Score=21.56 Aligned_cols=63 Identities=14% Similarity=0.120 Sum_probs=42.1
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 011081 341 REMGLSGVESSSVTFEHLVNGYCRAG-DVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVF 404 (494)
Q Consensus 341 ~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 404 (494)
+.+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 345667776665433 3445555555 56678999999988876677777777777777777543
No 355
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.66 E-value=1.7e+02 Score=22.99 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=33.1
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCCH
Q 011081 344 GLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK--GFEPEGSTIEVLIGELCDKRRV 403 (494)
Q Consensus 344 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~ 403 (494)
.+.|++.+. --..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-+
T Consensus 25 ~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 25 RQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 344555543 2334455555555566677777777665 5455555655555666655543
No 356
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=20.42 E-value=4.2e+02 Score=22.88 Aligned_cols=97 Identities=14% Similarity=0.164 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHH-CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC------------HHHHHHHHHHH
Q 011081 367 DVDSAILVYNDMCR-KGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPT------------EKSYMFLIKGL 433 (494)
Q Consensus 367 ~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~------------~~~~~~li~~~ 433 (494)
..++..+++....+ .|+..+......++. ...|++..+...++..... +-..+ ......++.+.
T Consensus 162 ~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~--~~~G~~r~~~~~l~~~~~~-~~~i~~~~v~~~~~~~~~~~~~~l~~~~ 238 (319)
T 2chq_A 162 PKEAMKKRLLEICEKEGVKITEDGLEALIY--ISGGDFRKAINALQGAAAI-GEVVDADTIYQITATARPEEMTELIQTA 238 (319)
T ss_dssp CHHHHHHHHHHHHHTTCCCBCHHHHHHHHH--TTTTCHHHHHHHHHHHHHS-SSCBCHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 34566666665543 566666666666653 3478999999988754332 21222 12233445554
Q ss_pred HhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHH
Q 011081 434 CEEGKMEEALKVQAEMVG-KGFEPSLEIYSAFIDGY 468 (494)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~ 468 (494)
. .|+.++|.+++.++.. .|..|... ...+...+
T Consensus 239 ~-~~~~~~a~~~l~~l~~~~g~~~~~i-~~~l~~~~ 272 (319)
T 2chq_A 239 L-KGNFMEARELLDRLMVEYGMSGEDI-VAQLFREI 272 (319)
T ss_dssp H-HTCHHHHHHHHHHHHHHSCCCHHHH-HHHHHHHH
T ss_pred H-hCCHHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 4 4899999999999987 77654433 33344443
Done!