Query 011082
Match_columns 494
No_of_seqs 508 out of 3051
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 07:55:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011082.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011082hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0536 Obg Predicted GTPase [ 100.0 4.2E-88 9E-93 666.8 32.6 329 47-482 1-336 (369)
2 PRK12299 obgE GTPase CgtA; Rev 100.0 1.5E-77 3.3E-82 612.7 35.7 325 48-482 1-331 (335)
3 PRK12297 obgE GTPase CgtA; Rev 100.0 5E-77 1.1E-81 623.4 35.6 328 48-483 1-331 (424)
4 PRK12296 obgE GTPase CgtA; Rev 100.0 2.3E-76 4.9E-81 625.5 34.7 329 47-482 2-343 (500)
5 TIGR02729 Obg_CgtA Obg family 100.0 2.1E-75 4.5E-80 596.4 35.6 322 49-478 1-328 (329)
6 PRK12298 obgE GTPase CgtA; Rev 100.0 1.6E-75 3.4E-80 608.9 34.5 330 47-483 1-337 (390)
7 KOG1489 Predicted GTP-binding 100.0 1.4E-73 3.1E-78 556.9 31.1 323 48-477 40-365 (366)
8 PF01018 GTP1_OBG: GTP1/OBG; 100.0 2E-43 4.3E-48 321.6 8.8 153 49-304 1-155 (156)
9 COG2262 HflX GTPases [General 100.0 2.5E-39 5.5E-44 328.2 11.4 250 208-481 102-358 (411)
10 PRK11058 GTPase HflX; Provisio 100.0 9.5E-34 2.1E-38 298.6 12.4 249 208-480 107-363 (426)
11 TIGR03156 GTP_HflX GTP-binding 100.0 5.9E-33 1.3E-37 286.2 11.6 245 208-477 99-350 (351)
12 KOG0410 Predicted GTP binding 99.9 1.7E-29 3.6E-34 247.9 0.9 244 208-480 89-342 (410)
13 COG1163 DRG Predicted GTPase [ 99.9 1.7E-25 3.8E-30 220.5 12.8 202 271-479 31-289 (365)
14 cd01898 Obg Obg subfamily. Th 99.9 7.2E-24 1.6E-28 194.9 17.8 165 307-478 1-170 (170)
15 cd01899 Ygr210 Ygr210 subfamil 99.9 5E-22 1.1E-26 202.1 18.5 176 309-484 1-274 (318)
16 PF02421 FeoB_N: Ferrous iron 99.9 6.7E-23 1.5E-27 187.4 10.2 150 308-474 2-156 (156)
17 cd01881 Obg_like The Obg-like 99.9 6.1E-22 1.3E-26 182.6 15.8 166 311-477 1-175 (176)
18 COG1159 Era GTPase [General fu 99.9 1.1E-21 2.5E-26 192.8 15.3 163 308-483 8-176 (298)
19 TIGR00436 era GTP-binding prot 99.9 1.2E-20 2.6E-25 188.4 18.5 162 308-483 2-168 (270)
20 cd01878 HflX HflX subfamily. 99.9 2E-21 4.4E-26 185.2 11.7 192 269-478 9-204 (204)
21 PRK09602 translation-associate 99.9 8.2E-21 1.8E-25 198.6 17.1 174 308-482 3-274 (396)
22 PTZ00258 GTP-binding protein; 99.9 9.9E-21 2.1E-25 196.3 16.9 161 305-465 20-266 (390)
23 cd01896 DRG The developmentall 99.8 2.4E-20 5.2E-25 182.4 17.0 169 307-479 1-226 (233)
24 COG0012 Predicted GTPase, prob 99.8 1.1E-20 2.3E-25 191.4 14.7 163 307-469 3-254 (372)
25 cd01897 NOG NOG1 is a nucleola 99.8 4.3E-20 9.3E-25 169.6 17.5 163 307-478 1-167 (168)
26 COG1160 Predicted GTPases [Gen 99.8 4.1E-20 8.9E-25 191.0 16.1 159 307-479 4-165 (444)
27 PRK15494 era GTPase Era; Provi 99.8 2.3E-19 5E-24 184.7 18.0 165 307-484 53-221 (339)
28 PRK09601 GTP-binding protein Y 99.8 1.4E-19 3E-24 185.8 16.0 159 307-465 3-243 (364)
29 cd01900 YchF YchF subfamily. 99.8 6.4E-20 1.4E-24 182.6 12.3 87 309-395 1-104 (274)
30 PRK05291 trmE tRNA modificatio 99.8 1.5E-20 3.2E-25 200.3 7.4 226 223-480 143-371 (449)
31 KOG1486 GTP-binding protein DR 99.8 2.1E-19 4.5E-24 171.5 13.1 170 306-479 62-288 (364)
32 COG1084 Predicted GTPase [Gene 99.8 8.4E-19 1.8E-23 174.1 17.1 164 305-478 167-335 (346)
33 PRK00089 era GTPase Era; Revie 99.8 1.7E-18 3.7E-23 174.6 17.3 163 308-483 7-175 (292)
34 cd01879 FeoB Ferrous iron tran 99.8 8.9E-19 1.9E-23 158.6 13.2 152 311-479 1-157 (158)
35 cd04171 SelB SelB subfamily. 99.8 3.1E-18 6.6E-23 155.9 16.4 150 308-476 2-163 (164)
36 cd01894 EngA1 EngA1 subfamily. 99.8 3E-18 6.6E-23 154.6 15.6 154 310-477 1-156 (157)
37 cd01861 Rab6 Rab6 subfamily. 99.8 2.7E-18 5.8E-23 156.4 14.9 154 308-478 2-161 (161)
38 cd04160 Arfrp1 Arfrp1 subfamil 99.8 1.8E-18 4E-23 158.6 13.8 154 308-476 1-166 (167)
39 cd04138 H_N_K_Ras_like H-Ras/N 99.8 5.6E-18 1.2E-22 153.6 16.3 154 308-478 3-161 (162)
40 cd04109 Rab28 Rab28 subfamily. 99.8 7.2E-18 1.6E-22 162.6 17.9 159 308-481 2-168 (215)
41 cd04136 Rap_like Rap-like subf 99.8 8.5E-18 1.8E-22 153.2 17.3 154 308-478 3-162 (163)
42 cd01865 Rab3 Rab3 subfamily. 99.8 6.1E-18 1.3E-22 155.6 16.4 155 308-479 3-163 (165)
43 COG0486 ThdF Predicted GTPase 99.8 1.8E-18 4E-23 179.3 14.3 163 303-481 214-378 (454)
44 cd01868 Rab11_like Rab11-like. 99.8 4.2E-18 9E-23 156.0 14.6 155 307-478 4-164 (165)
45 cd04142 RRP22 RRP22 subfamily. 99.8 1.1E-17 2.4E-22 159.5 17.9 170 308-484 2-179 (198)
46 cd04145 M_R_Ras_like M-Ras/R-R 99.8 1.2E-17 2.6E-22 152.3 16.7 154 308-478 4-163 (164)
47 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.4E-17 3.1E-22 152.5 17.2 153 307-479 1-166 (168)
48 cd04119 RJL RJL (RabJ-Like) su 99.8 1.5E-17 3.3E-22 151.7 16.8 156 308-478 2-166 (168)
49 cd01866 Rab2 Rab2 subfamily. 99.8 8.7E-18 1.9E-22 155.1 15.3 156 307-479 5-166 (168)
50 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 9.3E-18 2E-22 154.0 15.0 156 307-479 3-164 (166)
51 cd01864 Rab19 Rab19 subfamily. 99.8 1.3E-17 2.8E-22 153.1 15.9 155 307-477 4-164 (165)
52 cd04175 Rap1 Rap1 subgroup. T 99.8 2.6E-17 5.6E-22 150.8 17.9 155 308-479 3-163 (164)
53 cd04164 trmE TrmE (MnmE, ThdF, 99.8 1.2E-17 2.6E-22 150.5 15.4 153 307-478 2-156 (157)
54 cd04112 Rab26 Rab26 subfamily. 99.8 9.2E-18 2E-22 158.6 15.2 159 308-483 2-167 (191)
55 cd04124 RabL2 RabL2 subfamily. 99.8 2.2E-17 4.8E-22 151.5 17.2 154 308-480 2-159 (161)
56 smart00173 RAS Ras subfamily o 99.8 3.1E-17 6.8E-22 149.9 18.0 155 308-479 2-162 (164)
57 cd04144 Ras2 Ras2 subfamily. 99.8 1.3E-17 2.7E-22 157.6 15.7 159 308-482 1-166 (190)
58 cd01867 Rab8_Rab10_Rab13_like 99.8 1E-17 2.2E-22 154.4 14.7 156 307-479 4-165 (167)
59 smart00175 RAB Rab subfamily o 99.8 2.6E-17 5.6E-22 149.9 16.7 155 308-479 2-162 (164)
60 cd01895 EngA2 EngA2 subfamily. 99.8 4E-17 8.8E-22 149.1 18.0 158 307-477 3-173 (174)
61 cd04157 Arl6 Arl6 subfamily. 99.8 1.2E-17 2.7E-22 151.9 14.5 152 308-476 1-161 (162)
62 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 3.5E-17 7.7E-22 155.9 18.0 160 308-481 2-170 (201)
63 cd04114 Rab30 Rab30 subfamily. 99.8 1.6E-17 3.4E-22 152.7 14.9 157 305-478 6-168 (169)
64 cd04158 ARD1 ARD1 subfamily. 99.8 1.7E-17 3.6E-22 153.6 15.0 157 308-482 1-164 (169)
65 KOG1491 Predicted GTP-binding 99.8 1.1E-17 2.3E-22 166.2 14.4 90 307-396 21-127 (391)
66 cd04140 ARHI_like ARHI subfami 99.8 2.9E-17 6.2E-22 151.1 16.1 154 308-477 3-163 (165)
67 cd04122 Rab14 Rab14 subfamily. 99.7 2.3E-17 4.9E-22 151.8 15.0 155 307-479 3-164 (166)
68 cd04120 Rab12 Rab12 subfamily. 99.7 5E-17 1.1E-21 155.6 17.7 156 308-480 2-164 (202)
69 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 2.2E-17 4.8E-22 153.6 14.6 152 307-476 16-173 (174)
70 COG0370 FeoB Fe2+ transport sy 99.7 1.2E-17 2.5E-22 180.0 14.2 158 308-482 5-167 (653)
71 cd04121 Rab40 Rab40 subfamily. 99.7 5.8E-17 1.3E-21 153.6 17.3 156 307-481 7-169 (189)
72 PRK03003 GTP-binding protein D 99.7 2.6E-17 5.6E-22 176.8 16.7 163 304-480 36-200 (472)
73 PRK04213 GTP-binding protein; 99.7 9.3E-17 2E-21 152.5 18.7 168 307-484 10-197 (201)
74 cd00879 Sar1 Sar1 subfamily. 99.7 2.6E-17 5.6E-22 154.8 14.6 154 307-478 20-190 (190)
75 smart00178 SAR Sar1p-like memb 99.7 2.2E-17 4.7E-22 155.3 14.0 153 307-477 18-183 (184)
76 TIGR03594 GTPase_EngA ribosome 99.7 6.1E-17 1.3E-21 171.8 19.1 162 306-480 172-345 (429)
77 cd04151 Arl1 Arl1 subfamily. 99.7 2.3E-17 5E-22 150.4 13.8 151 308-476 1-157 (158)
78 cd01863 Rab18 Rab18 subfamily. 99.7 3.8E-17 8.2E-22 148.9 15.1 154 308-477 2-160 (161)
79 cd04101 RabL4 RabL4 (Rab-like4 99.7 3.2E-17 7E-22 149.8 14.6 153 308-478 2-163 (164)
80 cd04113 Rab4 Rab4 subfamily. 99.7 3.1E-17 6.7E-22 149.7 14.4 153 308-477 2-160 (161)
81 cd04139 RalA_RalB RalA/RalB su 99.7 8.8E-17 1.9E-21 146.2 17.3 155 308-479 2-162 (164)
82 cd04163 Era Era subfamily. Er 99.7 7.2E-17 1.6E-21 145.9 16.7 158 308-478 5-168 (168)
83 cd04150 Arf1_5_like Arf1-Arf5- 99.7 3.2E-17 6.8E-22 150.4 14.5 151 308-476 2-158 (159)
84 cd04123 Rab21 Rab21 subfamily. 99.7 7.2E-17 1.6E-21 146.3 16.7 154 308-478 2-161 (162)
85 cd04146 RERG_RasL11_like RERG/ 99.7 5.7E-17 1.2E-21 148.8 16.1 157 308-479 1-164 (165)
86 cd04106 Rab23_lke Rab23-like s 99.7 6.1E-17 1.3E-21 147.5 16.1 152 308-477 2-161 (162)
87 PRK03003 GTP-binding protein D 99.7 8E-17 1.7E-21 173.1 19.3 162 306-482 211-385 (472)
88 cd01862 Rab7 Rab7 subfamily. 99.7 1E-16 2.2E-21 147.3 17.3 160 308-481 2-169 (172)
89 KOG1423 Ras-like GTPase ERA [C 99.7 2.3E-17 5E-22 161.8 13.4 166 307-484 73-276 (379)
90 PTZ00369 Ras-like protein; Pro 99.7 5E-17 1.1E-21 153.4 15.4 161 307-484 6-172 (189)
91 cd04176 Rap2 Rap2 subgroup. T 99.7 5.9E-17 1.3E-21 148.1 15.2 154 308-478 3-162 (163)
92 cd00154 Rab Rab family. Rab G 99.7 6.1E-17 1.3E-21 145.3 15.0 151 308-475 2-158 (159)
93 cd04154 Arl2 Arl2 subfamily. 99.7 3.3E-17 7.1E-22 152.0 13.6 151 307-475 15-171 (173)
94 cd04159 Arl10_like Arl10-like 99.7 5.6E-17 1.2E-21 145.8 14.6 152 308-476 1-158 (159)
95 cd00878 Arf_Arl Arf (ADP-ribos 99.7 5.7E-17 1.2E-21 147.4 14.7 151 308-476 1-157 (158)
96 cd04127 Rab27A Rab27a subfamil 99.7 9.3E-17 2E-21 149.4 16.4 157 307-479 5-177 (180)
97 cd01890 LepA LepA subfamily. 99.7 1.6E-16 3.4E-21 147.5 17.5 151 308-478 2-176 (179)
98 cd04110 Rab35 Rab35 subfamily. 99.7 8.1E-17 1.8E-21 153.3 15.9 156 307-481 7-169 (199)
99 cd04149 Arf6 Arf6 subfamily. 99.7 5.4E-17 1.2E-21 150.4 14.1 152 307-476 10-167 (168)
100 TIGR03594 GTPase_EngA ribosome 99.7 6.1E-17 1.3E-21 171.8 16.5 160 308-481 1-162 (429)
101 TIGR00450 mnmE_trmE_thdF tRNA 99.7 6.5E-17 1.4E-21 171.8 16.7 160 303-480 200-361 (442)
102 PRK00093 GTP-binding protein D 99.7 1.3E-16 2.8E-21 169.6 18.9 162 306-480 173-345 (435)
103 cd00881 GTP_translation_factor 99.7 1.3E-16 2.9E-21 148.5 16.6 152 308-479 1-187 (189)
104 PRK09554 feoB ferrous iron tra 99.7 8.7E-17 1.9E-21 180.7 18.1 156 308-479 5-168 (772)
105 cd04116 Rab9 Rab9 subfamily. 99.7 1.7E-16 3.7E-21 146.2 17.0 157 307-477 6-169 (170)
106 PLN03110 Rab GTPase; Provision 99.7 6.9E-17 1.5E-21 156.0 15.0 157 307-480 13-175 (216)
107 cd01889 SelB_euk SelB subfamil 99.7 1.1E-16 2.5E-21 151.3 16.1 152 308-479 2-186 (192)
108 cd00876 Ras Ras family. The R 99.7 1.7E-16 3.7E-21 143.5 16.5 153 308-477 1-159 (160)
109 PRK00093 GTP-binding protein D 99.7 9.8E-17 2.1E-21 170.6 17.3 158 307-478 2-161 (435)
110 COG1160 Predicted GTPases [Gen 99.7 1.1E-16 2.3E-21 165.9 16.8 165 305-482 177-354 (444)
111 cd00877 Ran Ran (Ras-related n 99.7 1.2E-16 2.7E-21 147.5 15.7 153 308-480 2-160 (166)
112 cd04117 Rab15 Rab15 subfamily. 99.7 1.2E-16 2.6E-21 146.6 15.0 151 308-477 2-160 (161)
113 cd04156 ARLTS1 ARLTS1 subfamil 99.7 7.4E-17 1.6E-21 146.8 13.4 151 308-476 1-159 (160)
114 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 1.3E-16 2.9E-21 149.7 15.3 157 308-480 5-171 (183)
115 cd04125 RabA_like RabA-like su 99.7 1.5E-16 3.3E-21 149.6 15.4 156 308-480 2-163 (188)
116 cd00880 Era_like Era (E. coli 99.7 3.3E-16 7.2E-21 139.6 16.8 155 311-478 1-163 (163)
117 cd04118 Rab24 Rab24 subfamily. 99.7 2.4E-16 5.1E-21 148.7 16.7 155 308-480 2-167 (193)
118 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 2E-16 4.2E-21 147.2 15.7 157 308-481 4-166 (172)
119 cd01860 Rab5_related Rab5-rela 99.7 3E-16 6.6E-21 143.0 16.7 154 308-478 3-162 (163)
120 cd04161 Arl2l1_Arl13_like Arl2 99.7 1.2E-16 2.7E-21 147.7 14.2 151 308-476 1-166 (167)
121 smart00177 ARF ARF-like small 99.7 1.6E-16 3.4E-21 148.2 15.0 154 307-478 14-173 (175)
122 cd01874 Cdc42 Cdc42 subfamily. 99.7 2.5E-16 5.4E-21 147.0 15.9 152 308-477 3-173 (175)
123 PLN03118 Rab family protein; P 99.7 2.3E-16 5E-21 151.5 16.1 157 307-481 15-179 (211)
124 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 2.7E-16 5.9E-21 146.0 16.1 156 308-480 2-166 (170)
125 cd04143 Rhes_like Rhes_like su 99.7 3.6E-16 7.9E-21 154.2 17.7 157 308-479 2-171 (247)
126 cd04147 Ras_dva Ras-dva subfam 99.7 3.2E-16 7E-21 149.0 16.8 156 308-480 1-164 (198)
127 PLN03108 Rab family protein; P 99.7 3.4E-16 7.5E-21 150.5 16.9 157 307-480 7-169 (210)
128 cd04137 RheB Rheb (Ras Homolog 99.7 2.3E-16 5E-21 146.8 15.2 158 308-482 3-166 (180)
129 PF00009 GTP_EFTU: Elongation 99.7 7.4E-17 1.6E-21 152.3 11.9 154 306-479 3-187 (188)
130 PRK09518 bifunctional cytidyla 99.7 2E-16 4.4E-21 177.7 17.5 164 304-481 273-438 (712)
131 cd04132 Rho4_like Rho4-like su 99.7 2.8E-16 6.1E-21 147.3 15.7 157 308-482 2-170 (187)
132 PLN00223 ADP-ribosylation fact 99.7 3E-16 6.5E-21 147.4 15.8 154 308-480 19-179 (181)
133 smart00174 RHO Rho (Ras homolo 99.7 3.1E-16 6.6E-21 144.9 15.4 152 309-478 1-171 (174)
134 TIGR00231 small_GTP small GTP- 99.7 7.9E-16 1.7E-20 137.1 17.6 154 307-475 2-160 (161)
135 cd04177 RSR1 RSR1 subgroup. R 99.7 6E-16 1.3E-20 142.7 17.1 155 308-478 3-163 (168)
136 cd04111 Rab39 Rab39 subfamily. 99.7 4.3E-16 9.2E-21 150.0 16.8 158 308-481 4-168 (211)
137 PRK09518 bifunctional cytidyla 99.7 3.3E-16 7.2E-21 176.0 18.5 162 306-482 450-624 (712)
138 PRK00454 engB GTP-binding prot 99.7 4.3E-16 9.4E-21 146.8 16.4 160 305-480 23-195 (196)
139 cd04115 Rab33B_Rab33A Rab33B/R 99.7 3.2E-16 6.9E-21 144.9 15.2 157 307-478 3-168 (170)
140 cd04155 Arl3 Arl3 subfamily. 99.7 1.8E-16 3.8E-21 146.4 13.3 151 307-476 15-172 (173)
141 PTZ00133 ADP-ribosylation fact 99.7 3.3E-16 7.2E-21 147.2 14.8 156 307-480 18-179 (182)
142 TIGR03598 GTPase_YsxC ribosome 99.7 2.9E-16 6.3E-21 146.8 14.4 147 306-468 18-179 (179)
143 cd01892 Miro2 Miro2 subfamily. 99.7 4.4E-16 9.5E-21 144.4 15.3 156 306-479 4-166 (169)
144 cd01893 Miro1 Miro1 subfamily. 99.7 4.2E-16 9E-21 143.6 15.1 153 308-479 2-164 (166)
145 cd04134 Rho3 Rho3 subfamily. 99.7 4.2E-16 9.1E-21 147.1 15.4 156 308-481 2-176 (189)
146 cd04128 Spg1 Spg1p. Spg1p (se 99.7 6.9E-16 1.5E-20 145.2 16.2 157 308-483 2-170 (182)
147 PLN03071 GTP-binding nuclear p 99.7 5E-16 1.1E-20 150.5 15.4 154 307-481 14-174 (219)
148 cd01891 TypA_BipA TypA (tyrosi 99.7 9.1E-16 2E-20 145.3 16.7 143 307-469 3-172 (194)
149 cd04133 Rop_like Rop subfamily 99.7 8.2E-16 1.8E-20 144.1 15.9 152 308-478 3-172 (176)
150 cd04126 Rab20 Rab20 subfamily. 99.7 1.1E-15 2.4E-20 148.2 17.2 153 308-479 2-190 (220)
151 cd01870 RhoA_like RhoA-like su 99.7 7.2E-16 1.6E-20 142.6 15.1 153 308-478 3-174 (175)
152 PRK15467 ethanolamine utilizat 99.7 4.7E-16 1E-20 143.0 13.7 145 308-481 3-149 (158)
153 cd04148 RGK RGK subfamily. Th 99.7 5.5E-16 1.2E-20 150.4 14.8 155 308-480 2-164 (221)
154 cd01871 Rac1_like Rac1-like su 99.7 8.9E-16 1.9E-20 143.1 15.5 152 308-477 3-173 (174)
155 KOG0084 GTPase Rab1/YPT1, smal 99.7 3.9E-16 8.5E-21 144.6 12.5 161 304-481 7-174 (205)
156 cd04131 Rnd Rnd subfamily. Th 99.7 1.2E-15 2.6E-20 143.1 15.4 152 308-477 3-174 (178)
157 cd00157 Rho Rho (Ras homology) 99.7 8E-16 1.7E-20 141.2 14.0 151 308-476 2-170 (171)
158 cd01875 RhoG RhoG subfamily. 99.7 1.4E-15 3E-20 144.0 15.9 155 308-480 5-178 (191)
159 cd04135 Tc10 TC10 subfamily. 99.7 1.2E-15 2.7E-20 140.9 15.2 153 308-478 2-173 (174)
160 PF01926 MMR_HSR1: 50S ribosom 99.7 3.4E-16 7.3E-21 135.9 10.5 113 308-434 1-116 (116)
161 cd01888 eIF2_gamma eIF2-gamma 99.7 1.4E-15 3E-20 145.6 15.6 155 308-480 2-200 (203)
162 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.7 1.7E-15 3.8E-20 142.6 15.7 152 308-477 7-178 (182)
163 cd04103 Centaurin_gamma Centau 99.7 2.5E-15 5.5E-20 138.0 16.2 148 308-477 2-157 (158)
164 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.7 2.3E-15 4.9E-20 147.1 16.8 154 308-480 15-189 (232)
165 cd04130 Wrch_1 Wrch-1 subfamil 99.7 1.6E-15 3.4E-20 140.7 14.8 150 308-475 2-170 (173)
166 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 2.1E-15 4.7E-20 139.1 15.3 149 309-476 2-163 (164)
167 PF00025 Arf: ADP-ribosylation 99.7 1.4E-15 3.1E-20 142.1 13.8 153 308-478 16-175 (175)
168 KOG1487 GTP-binding protein DR 99.7 2.7E-16 5.9E-21 150.9 8.9 169 307-479 60-281 (358)
169 PRK09866 hypothetical protein; 99.6 1E-15 2.3E-20 164.3 14.0 110 354-476 231-350 (741)
170 cd01876 YihA_EngB The YihA (En 99.6 2.9E-15 6.3E-20 135.8 15.1 155 308-478 1-170 (170)
171 cd04129 Rho2 Rho2 subfamily. 99.6 3.3E-15 7.2E-20 140.7 15.4 156 308-481 3-175 (187)
172 TIGR00437 feoB ferrous iron tr 99.6 2.2E-15 4.8E-20 165.5 15.9 149 313-478 1-154 (591)
173 TIGR02528 EutP ethanolamine ut 99.6 1.5E-15 3.2E-20 135.9 11.3 137 308-475 2-141 (142)
174 KOG0078 GTP-binding protein SE 99.6 7.5E-15 1.6E-19 137.9 16.0 158 306-480 12-175 (207)
175 smart00176 RAN Ran (Ras-relate 99.6 5.1E-15 1.1E-19 141.5 14.8 148 312-480 1-155 (200)
176 cd04166 CysN_ATPS CysN_ATPS su 99.6 3.2E-15 6.9E-20 143.6 13.4 145 308-471 1-186 (208)
177 TIGR00092 GTP-binding protein 99.6 1.9E-15 4.1E-20 155.5 12.2 88 308-395 4-109 (368)
178 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 8.1E-15 1.7E-19 142.3 16.0 153 308-478 3-175 (222)
179 cd01884 EF_Tu EF-Tu subfamily. 99.6 7E-15 1.5E-19 140.0 15.1 140 308-467 4-171 (195)
180 COG0218 Predicted GTPase [Gene 99.6 1.7E-14 3.6E-19 135.4 16.5 159 305-480 23-198 (200)
181 PF00071 Ras: Ras family; Int 99.6 1.2E-14 2.5E-19 132.6 14.9 154 308-479 1-161 (162)
182 KOG0092 GTPase Rab5/YPT51 and 99.6 4.6E-15 9.9E-20 137.1 12.1 158 308-484 7-172 (200)
183 TIGR00475 selB selenocysteine- 99.6 1.2E-14 2.6E-19 159.6 16.9 155 308-482 2-169 (581)
184 PRK05306 infB translation init 99.6 1.6E-14 3.5E-19 161.9 18.1 154 304-477 288-450 (787)
185 cd01873 RhoBTB RhoBTB subfamil 99.6 1.1E-14 2.4E-19 138.7 14.3 150 308-477 4-194 (195)
186 KOG0073 GTP-binding ADP-ribosy 99.6 2.4E-14 5.1E-19 129.0 15.1 155 308-480 18-179 (185)
187 TIGR00487 IF-2 translation ini 99.6 2.2E-14 4.8E-19 157.1 17.7 152 305-476 86-247 (587)
188 CHL00189 infB translation init 99.6 2.7E-14 5.8E-19 158.9 16.6 155 304-478 242-409 (742)
189 KOG1490 GTP-binding protein CR 99.6 2.6E-15 5.7E-20 155.4 7.7 159 305-474 167-336 (620)
190 cd00882 Ras_like_GTPase Ras-li 99.6 4.2E-14 9E-19 124.2 14.3 150 311-475 1-156 (157)
191 KOG0394 Ras-related GTPase [Ge 99.6 2.2E-14 4.8E-19 131.5 11.7 163 305-483 8-182 (210)
192 PF10662 PduV-EutP: Ethanolami 99.6 4.1E-14 8.9E-19 127.1 13.1 138 307-475 2-142 (143)
193 KOG1191 Mitochondrial GTPase [ 99.6 7.9E-15 1.7E-19 152.1 9.6 173 303-480 265-451 (531)
194 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.6 8.1E-14 1.8E-18 129.0 14.6 159 307-482 23-188 (221)
195 PRK10512 selenocysteinyl-tRNA- 99.6 8.4E-14 1.8E-18 153.5 17.3 154 308-481 2-168 (614)
196 TIGR01393 lepA GTP-binding pro 99.5 1.4E-13 3E-18 151.4 18.0 156 306-481 3-182 (595)
197 KOG0087 GTPase Rab11/YPT3, sma 99.5 4.9E-14 1.1E-18 132.0 12.3 159 304-479 12-176 (222)
198 CHL00071 tufA elongation facto 99.5 1.2E-13 2.6E-18 146.0 16.0 153 307-479 13-211 (409)
199 PRK12317 elongation factor 1-a 99.5 9.4E-14 2E-18 147.5 14.2 146 307-469 7-195 (425)
200 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 2.4E-13 5.2E-18 129.2 15.5 165 308-482 2-187 (196)
201 cd04168 TetM_like Tet(M)-like 99.5 4.1E-13 8.9E-18 131.7 17.5 124 308-451 1-144 (237)
202 TIGR00491 aIF-2 translation in 99.5 2E-13 4.3E-18 149.5 16.6 154 306-479 4-216 (590)
203 PTZ00132 GTP-binding nuclear p 99.5 3.1E-13 6.8E-18 130.1 16.1 154 307-482 10-171 (215)
204 TIGR01394 TypA_BipA GTP-bindin 99.5 2.2E-13 4.9E-18 149.5 16.9 156 307-482 2-194 (594)
205 TIGR03680 eif2g_arch translati 99.5 1.4E-13 3E-18 145.3 14.8 155 308-480 6-197 (406)
206 PRK12736 elongation factor Tu; 99.5 1.9E-13 4.2E-18 143.7 15.7 155 306-480 12-202 (394)
207 KOG0095 GTPase Rab30, small G 99.5 1.3E-13 2.9E-18 122.1 12.0 159 304-478 5-168 (213)
208 cd01883 EF1_alpha Eukaryotic e 99.5 1E-13 2.2E-18 134.2 12.3 149 308-468 1-194 (219)
209 KOG0093 GTPase Rab3, small G p 99.5 1.5E-13 3.3E-18 121.6 11.7 167 304-487 19-191 (193)
210 PRK10218 GTP-binding protein; 99.5 4.5E-13 9.8E-18 147.1 18.3 158 305-482 4-198 (607)
211 PRK12735 elongation factor Tu; 99.5 2E-13 4.4E-18 143.6 14.4 153 307-479 13-203 (396)
212 cd04165 GTPBP1_like GTPBP1-lik 99.5 6.3E-13 1.4E-17 129.3 16.6 150 308-477 1-221 (224)
213 KOG0075 GTP-binding ADP-ribosy 99.5 9.2E-14 2E-18 122.9 9.5 156 308-480 22-183 (186)
214 KOG0080 GTPase Rab18, small G 99.5 2.7E-13 5.9E-18 121.6 12.3 157 307-482 12-177 (209)
215 PRK05433 GTP-binding protein L 99.5 7.9E-13 1.7E-17 145.6 18.0 158 304-481 5-186 (600)
216 PRK04000 translation initiatio 99.5 4E-13 8.6E-18 142.0 14.8 156 307-480 10-202 (411)
217 cd01886 EF-G Elongation factor 99.5 5.2E-13 1.1E-17 133.5 14.2 135 308-462 1-158 (270)
218 PRK00049 elongation factor Tu; 99.5 5.3E-13 1.1E-17 140.5 14.9 153 307-479 13-203 (396)
219 PLN03127 Elongation factor Tu; 99.5 9.8E-13 2.1E-17 140.2 17.0 155 306-480 61-253 (447)
220 KOG0098 GTPase Rab2, small G p 99.5 3.2E-13 6.9E-18 124.1 11.4 155 307-480 7-169 (216)
221 KOG0079 GTP-binding protein H- 99.5 2.3E-13 4.9E-18 120.5 9.2 158 305-481 7-171 (198)
222 TIGR00483 EF-1_alpha translati 99.4 5.6E-13 1.2E-17 141.6 13.2 148 306-469 7-197 (426)
223 TIGR00485 EF-Tu translation el 99.4 1.1E-12 2.3E-17 138.1 15.0 152 307-478 13-200 (394)
224 PLN03126 Elongation factor Tu; 99.4 1.9E-12 4.2E-17 138.7 16.6 154 305-478 80-279 (478)
225 cd04104 p47_IIGP_like p47 (47- 99.4 1.4E-12 3.1E-17 124.2 13.8 157 308-485 3-190 (197)
226 KOG0070 GTP-binding ADP-ribosy 99.4 4.6E-13 1E-17 123.4 9.7 153 308-480 19-179 (181)
227 cd04105 SR_beta Signal recogni 99.4 2.7E-12 5.8E-17 123.0 14.9 118 307-440 1-124 (203)
228 PRK05506 bifunctional sulfate 99.4 1.4E-12 2.9E-17 145.2 13.3 143 308-469 26-211 (632)
229 PRK04004 translation initiatio 99.4 2.8E-12 6.1E-17 140.8 15.3 153 306-478 6-217 (586)
230 TIGR02034 CysN sulfate adenyly 99.4 2.4E-12 5.3E-17 135.9 14.1 143 308-469 2-187 (406)
231 PF08477 Miro: Miro-like prote 99.4 9.4E-13 2E-17 114.1 8.4 115 308-436 1-119 (119)
232 cd04170 EF-G_bact Elongation f 99.4 7E-12 1.5E-16 125.1 15.4 139 308-467 1-161 (268)
233 PTZ00327 eukaryotic translatio 99.4 4.2E-12 9.1E-17 135.4 14.2 157 307-481 35-235 (460)
234 PRK12739 elongation factor G; 99.4 5.9E-12 1.3E-16 141.4 16.1 115 305-439 7-139 (691)
235 COG3596 Predicted GTPase [Gene 99.4 3.1E-12 6.8E-17 124.9 11.8 168 305-483 38-226 (296)
236 PRK05124 cysN sulfate adenylyl 99.4 5.2E-12 1.1E-16 135.7 14.7 147 306-471 27-217 (474)
237 cd04167 Snu114p Snu114p subfam 99.4 1E-11 2.2E-16 119.6 15.1 111 308-438 2-136 (213)
238 cd04169 RF3 RF3 subfamily. Pe 99.4 1.3E-11 2.8E-16 123.2 16.0 125 307-451 3-151 (267)
239 KOG0076 GTP-binding ADP-ribosy 99.4 2.6E-12 5.7E-17 116.9 9.9 159 307-481 18-189 (197)
240 PRK00741 prfC peptide chain re 99.4 1.5E-11 3.3E-16 133.4 17.4 116 304-439 8-145 (526)
241 cd04102 RabL3 RabL3 (Rab-like3 99.4 1.3E-11 2.9E-16 118.2 15.0 140 308-464 2-175 (202)
242 KOG0395 Ras-related GTPase [Ge 99.4 1.3E-11 2.8E-16 117.7 14.6 156 308-480 5-166 (196)
243 TIGR00484 EF-G translation elo 99.3 1.3E-11 2.9E-16 138.5 16.0 141 304-464 8-171 (689)
244 KOG0462 Elongation factor-type 99.3 1.4E-11 3.1E-16 129.3 14.5 159 305-483 59-239 (650)
245 PRK00007 elongation factor G; 99.3 1.8E-11 4E-16 137.4 16.3 115 305-439 9-141 (693)
246 KOG0086 GTPase Rab4, small G p 99.3 1.9E-11 4.1E-16 108.9 12.0 152 305-474 8-166 (214)
247 PTZ00141 elongation factor 1- 99.3 1.8E-11 4E-16 130.5 13.8 157 308-477 9-223 (446)
248 TIGR00503 prfC peptide chain r 99.3 4.9E-11 1.1E-15 129.6 17.3 116 304-439 9-146 (527)
249 KOG0091 GTPase Rab39, small G 99.3 1.9E-11 4E-16 110.2 11.1 151 308-479 10-173 (213)
250 cd01885 EF2 EF2 (for archaea a 99.3 7.4E-11 1.6E-15 114.6 16.0 111 308-438 2-138 (222)
251 PRK13351 elongation factor G; 99.3 3.2E-11 6.9E-16 135.6 15.5 116 305-440 7-140 (687)
252 COG1100 GTPase SAR1 and relate 99.3 8.2E-11 1.8E-15 112.9 15.5 158 307-480 6-186 (219)
253 PRK13768 GTPase; Provisional 99.3 4.5E-11 9.7E-16 118.5 12.8 120 354-482 98-250 (253)
254 TIGR02836 spore_IV_A stage IV 99.3 1.4E-10 2.9E-15 119.8 16.6 166 308-482 19-237 (492)
255 COG2229 Predicted GTPase [Gene 99.3 1.4E-10 3.1E-15 107.0 15.0 153 306-477 10-176 (187)
256 KOG1145 Mitochondrial translat 99.3 6.5E-11 1.4E-15 124.3 14.0 154 304-477 151-314 (683)
257 KOG0071 GTP-binding ADP-ribosy 99.3 5.3E-11 1.1E-15 104.8 11.0 153 308-480 19-179 (180)
258 PLN00023 GTP-binding protein; 99.2 4E-11 8.6E-16 121.6 11.4 117 307-439 22-165 (334)
259 cd01882 BMS1 Bms1. Bms1 is an 99.2 1.2E-10 2.7E-15 113.3 14.3 132 304-464 37-181 (225)
260 KOG0088 GTPase Rab21, small G 99.2 1.7E-11 3.6E-16 109.9 6.9 153 307-478 14-174 (218)
261 cd01853 Toc34_like Toc34-like 99.2 8.1E-11 1.8E-15 116.3 11.6 129 303-439 28-163 (249)
262 COG0532 InfB Translation initi 99.2 1.5E-10 3.2E-15 122.3 14.2 153 306-478 5-169 (509)
263 KOG0077 Vesicle coat complex C 99.2 6E-11 1.3E-15 107.3 8.3 153 304-477 18-191 (193)
264 PLN00043 elongation factor 1-a 99.2 1.6E-10 3.4E-15 123.4 13.1 150 307-469 8-203 (447)
265 PRK12740 elongation factor G; 99.2 3.6E-10 7.8E-15 126.8 16.3 108 312-439 1-126 (668)
266 TIGR00750 lao LAO/AO transport 99.2 2E-10 4.3E-15 116.6 12.9 101 352-479 126-238 (300)
267 COG4917 EutP Ethanolamine util 99.2 8.7E-11 1.9E-15 101.7 8.6 140 307-477 2-144 (148)
268 KOG0081 GTPase Rab27, small G 99.2 7.6E-11 1.6E-15 105.8 7.6 153 308-479 11-181 (219)
269 PTZ00099 rab6; Provisional 99.2 4.8E-10 1E-14 105.0 13.2 119 347-482 21-145 (176)
270 PRK09435 membrane ATPase/prote 99.1 4.4E-10 9.5E-15 115.1 13.8 102 352-480 148-261 (332)
271 KOG0083 GTPase Rab26/Rab37, sm 99.1 3.9E-11 8.4E-16 104.7 4.9 152 311-480 2-161 (192)
272 COG0481 LepA Membrane GTPase L 99.1 4.4E-10 9.6E-15 116.5 12.9 161 304-484 7-191 (603)
273 PF09439 SRPRB: Signal recogni 99.1 1.9E-10 4.1E-15 107.8 8.9 117 307-440 4-127 (181)
274 PRK10463 hydrogenase nickel in 99.1 8.4E-11 1.8E-15 117.7 6.2 55 423-477 228-287 (290)
275 KOG0090 Signal recognition par 99.1 5.1E-10 1.1E-14 105.5 11.0 155 307-478 39-238 (238)
276 PF04548 AIG1: AIG1 family; I 99.1 7.7E-10 1.7E-14 106.7 12.0 166 308-484 2-191 (212)
277 COG5257 GCD11 Translation init 99.1 5.3E-10 1.1E-14 111.0 10.3 164 307-488 11-211 (415)
278 KOG0074 GTP-binding ADP-ribosy 99.1 3.8E-10 8.2E-15 99.6 8.1 152 308-480 19-180 (185)
279 COG3276 SelB Selenocysteine-sp 99.1 8.5E-10 1.9E-14 114.1 11.9 153 308-479 2-162 (447)
280 TIGR00991 3a0901s02IAP34 GTP-b 99.1 7.9E-10 1.7E-14 111.5 11.3 120 307-438 39-166 (313)
281 KOG0097 GTPase Rab14, small G 99.0 1.4E-09 3E-14 95.9 10.3 156 305-478 10-172 (215)
282 cd01850 CDC_Septin CDC/Septin. 99.0 2.8E-09 6.1E-14 106.9 14.1 122 308-442 6-160 (276)
283 KOG1532 GTPase XAB1, interacts 99.0 2.8E-09 6E-14 104.0 12.9 120 354-482 117-267 (366)
284 PF03029 ATP_bind_1: Conserved 99.0 1.7E-09 3.6E-14 106.3 11.1 116 354-478 92-236 (238)
285 KOG0072 GTP-binding ADP-ribosy 99.0 8.6E-10 1.9E-14 97.7 8.0 153 308-481 20-181 (182)
286 PF03308 ArgK: ArgK protein; 99.0 2.9E-10 6.2E-15 111.1 4.7 100 353-479 122-230 (266)
287 KOG0461 Selenocysteine-specifi 99.0 4.9E-09 1.1E-13 104.9 13.2 160 307-486 8-200 (522)
288 TIGR00073 hypB hydrogenase acc 99.0 3.8E-09 8.3E-14 101.4 11.9 54 425-478 148-206 (207)
289 KOG0393 Ras-related small GTPa 99.0 1.1E-09 2.5E-14 103.3 7.6 155 308-480 6-180 (198)
290 COG5256 TEF1 Translation elong 99.0 2.5E-09 5.5E-14 109.9 10.1 151 307-469 8-201 (428)
291 TIGR00101 ureG urease accessor 99.0 1.3E-08 2.8E-13 97.3 14.1 78 384-478 113-195 (199)
292 PF04670 Gtr1_RagA: Gtr1/RagA 98.9 1.2E-08 2.6E-13 99.6 13.6 161 308-478 1-175 (232)
293 PF00350 Dynamin_N: Dynamin fa 98.9 4.4E-09 9.6E-14 96.7 9.8 67 354-435 102-168 (168)
294 PRK07560 elongation factor EF- 98.9 8.8E-09 1.9E-13 116.5 14.2 114 305-438 19-152 (731)
295 KOG3883 Ras family small GTPas 98.9 1.7E-08 3.8E-13 90.3 13.0 163 306-482 9-178 (198)
296 COG1217 TypA Predicted membran 98.9 1.4E-08 3E-13 105.3 13.9 160 305-484 4-200 (603)
297 smart00053 DYNc Dynamin, GTPas 98.9 1E-08 2.2E-13 100.6 12.0 124 305-440 25-207 (240)
298 PRK14845 translation initiatio 98.9 1.3E-08 2.8E-13 117.3 14.2 142 318-479 473-673 (1049)
299 COG1131 CcmA ABC-type multidru 98.9 2.9E-09 6.3E-14 107.7 7.1 162 296-473 21-206 (293)
300 PTZ00416 elongation factor 2; 98.9 1.1E-08 2.4E-13 117.1 12.2 114 305-438 18-157 (836)
301 COG1120 FepC ABC-type cobalami 98.9 8.7E-09 1.9E-13 101.5 9.8 147 297-461 19-197 (258)
302 PLN00116 translation elongatio 98.9 1.3E-08 2.8E-13 116.8 12.5 114 305-438 18-163 (843)
303 COG1703 ArgK Putative periplas 98.9 1.7E-08 3.7E-13 100.1 11.2 101 353-480 144-255 (323)
304 PF05049 IIGP: Interferon-indu 98.9 1.2E-08 2.5E-13 105.7 10.5 157 308-485 37-224 (376)
305 COG4152 ABC-type uncharacteriz 98.9 8.8E-09 1.9E-13 99.4 8.8 169 290-477 12-203 (300)
306 COG1121 ZnuC ABC-type Mn/Zn tr 98.8 8.1E-09 1.8E-13 101.3 8.1 159 296-461 20-197 (254)
307 KOG4252 GTP-binding protein [S 98.8 5.1E-09 1.1E-13 95.9 5.3 157 305-480 19-182 (246)
308 TIGR00993 3a0901s04IAP86 chlor 98.8 3.1E-08 6.6E-13 107.8 11.7 126 306-439 118-250 (763)
309 TIGR00490 aEF-2 translation el 98.8 1.7E-08 3.7E-13 114.0 9.8 115 305-439 18-152 (720)
310 PRK13537 nodulation ABC transp 98.8 1.1E-08 2.3E-13 104.3 7.1 161 297-473 24-207 (306)
311 COG4586 ABC-type uncharacteriz 98.8 1.3E-08 2.8E-13 99.7 7.0 162 296-475 40-228 (325)
312 COG4555 NatA ABC-type Na+ tran 98.8 8.4E-09 1.8E-13 97.0 5.5 159 297-475 19-204 (245)
313 COG1116 TauB ABC-type nitrate/ 98.8 2.9E-08 6.2E-13 96.6 8.8 149 297-461 20-189 (248)
314 PRK13536 nodulation factor exp 98.7 1.7E-08 3.6E-13 104.3 7.5 162 296-473 57-241 (340)
315 COG2895 CysN GTPases - Sulfate 98.7 5.3E-08 1.1E-12 98.2 10.1 144 306-469 6-193 (431)
316 COG0480 FusA Translation elong 98.7 1.3E-07 2.7E-12 105.4 13.9 128 304-451 8-156 (697)
317 cd03269 ABC_putative_ATPase Th 98.7 3.1E-08 6.6E-13 95.0 7.8 149 297-461 17-186 (210)
318 TIGR01188 drrA daunorubicin re 98.7 2.1E-08 4.5E-13 101.9 6.9 148 297-460 10-181 (302)
319 COG1136 SalX ABC-type antimicr 98.7 7.9E-08 1.7E-12 93.0 10.0 149 297-461 22-201 (226)
320 TIGR00960 3a0501s02 Type II (G 98.7 3.2E-08 6.9E-13 95.3 7.2 34 296-329 19-52 (216)
321 KOG1144 Translation initiation 98.7 6.7E-08 1.5E-12 104.6 10.0 155 305-481 474-689 (1064)
322 cd03261 ABC_Org_Solvent_Resist 98.7 6.6E-08 1.4E-12 94.4 9.2 33 297-329 17-49 (235)
323 cd03293 ABC_NrtD_SsuB_transpor 98.7 4.2E-08 9.1E-13 94.8 7.7 149 297-461 21-190 (220)
324 cd03259 ABC_Carb_Solutes_like 98.7 2.4E-08 5.3E-13 95.9 6.0 33 297-329 17-49 (213)
325 KOG0458 Elongation factor 1 al 98.7 9.4E-08 2E-12 101.8 10.5 153 305-469 176-372 (603)
326 TIGR03522 GldA_ABC_ATP gliding 98.7 4.2E-08 9.1E-13 99.7 7.4 161 296-473 18-201 (301)
327 cd03298 ABC_ThiQ_thiamine_tran 98.7 4.4E-08 9.6E-13 94.0 7.2 32 298-329 16-47 (211)
328 COG0378 HypB Ni2+-binding GTPa 98.7 1.3E-07 2.9E-12 88.6 9.9 75 386-477 120-199 (202)
329 TIGR01288 nodI ATP-binding ABC 98.6 3.8E-08 8.3E-13 100.0 6.7 148 297-460 21-192 (303)
330 TIGR02673 FtsE cell division A 98.6 4.2E-08 9E-13 94.3 6.6 33 297-329 19-51 (214)
331 cd03263 ABC_subfamily_A The AB 98.6 4.9E-08 1.1E-12 94.2 6.6 33 297-329 19-51 (220)
332 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.6 1.1E-07 2.4E-12 91.7 9.0 33 297-329 21-53 (218)
333 cd03266 ABC_NatA_sodium_export 98.6 4.6E-08 9.9E-13 94.3 6.1 33 297-329 22-54 (218)
334 cd04178 Nucleostemin_like Nucl 98.6 5.1E-08 1.1E-12 91.1 6.1 56 305-363 116-172 (172)
335 TIGR01184 ntrCD nitrate transp 98.6 4.5E-08 9.8E-13 95.5 5.9 148 298-461 3-173 (230)
336 PRK13543 cytochrome c biogenes 98.6 8.6E-08 1.9E-12 92.4 7.7 33 297-329 28-60 (214)
337 cd03264 ABC_drug_resistance_li 98.6 5.5E-08 1.2E-12 93.3 6.3 147 297-460 17-186 (211)
338 cd03265 ABC_DrrA DrrA is the A 98.6 5.3E-08 1.2E-12 94.1 6.2 33 297-329 17-49 (220)
339 cd03226 ABC_cobalt_CbiO_domain 98.6 3.8E-08 8.2E-13 94.1 5.0 34 296-329 16-49 (205)
340 TIGR01277 thiQ thiamine ABC tr 98.6 9.8E-08 2.1E-12 91.8 7.9 149 297-461 15-187 (213)
341 cd03218 ABC_YhbG The ABC trans 98.6 6.4E-08 1.4E-12 94.2 6.6 33 297-329 17-49 (232)
342 cd03225 ABC_cobalt_CbiO_domain 98.6 1E-07 2.2E-12 91.4 7.7 33 297-329 18-50 (211)
343 PRK11247 ssuB aliphatic sulfon 98.6 1.2E-07 2.6E-12 94.3 8.3 149 297-461 29-192 (257)
344 cd03262 ABC_HisP_GlnQ_permease 98.6 9.2E-08 2E-12 91.8 7.3 33 297-329 17-49 (213)
345 cd03292 ABC_FtsE_transporter F 98.6 9.1E-08 2E-12 91.9 7.2 33 297-329 18-50 (214)
346 TIGR01189 ccmA heme ABC export 98.6 1.7E-07 3.6E-12 89.2 8.8 33 297-329 17-49 (198)
347 PRK10908 cell division protein 98.6 1.2E-07 2.7E-12 91.7 8.0 34 296-329 18-51 (222)
348 KOG1707 Predicted Ras related/ 98.6 1.7E-07 3.7E-12 99.8 9.3 155 307-478 10-174 (625)
349 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.6 9E-08 1.9E-12 93.0 6.7 150 296-461 38-200 (224)
350 PRK13546 teichoic acids export 98.6 1.5E-07 3.3E-12 93.9 8.4 149 297-461 41-201 (264)
351 PRK13541 cytochrome c biogenes 98.6 1.5E-07 3.3E-12 89.3 8.1 44 298-352 18-61 (195)
352 PRK11248 tauB taurine transpor 98.6 9.5E-08 2.1E-12 94.8 6.9 162 296-474 17-199 (255)
353 cd03268 ABC_BcrA_bacitracin_re 98.6 1E-07 2.2E-12 91.3 6.8 34 296-329 16-49 (208)
354 PRK09536 btuD corrinoid ABC tr 98.6 8.4E-08 1.8E-12 101.1 6.8 149 296-460 19-196 (402)
355 cd03258 ABC_MetN_methionine_tr 98.6 8.1E-08 1.8E-12 93.6 6.1 33 297-329 22-54 (233)
356 cd03219 ABC_Mj1267_LivG_branch 98.6 9.8E-08 2.1E-12 93.1 6.6 33 297-329 17-49 (236)
357 cd03301 ABC_MalK_N The N-termi 98.6 7.4E-08 1.6E-12 92.5 5.7 33 297-329 17-49 (213)
358 COG1134 TagH ABC-type polysacc 98.6 7E-08 1.5E-12 93.4 5.4 161 297-474 44-217 (249)
359 TIGR03411 urea_trans_UrtD urea 98.6 2.5E-07 5.5E-12 90.6 9.5 34 296-329 18-51 (242)
360 PRK13538 cytochrome c biogenes 98.6 1.6E-07 3.4E-12 89.9 7.8 33 297-329 18-50 (204)
361 cd03229 ABC_Class3 This class 98.6 1.6E-07 3.5E-12 87.9 7.5 47 296-353 16-62 (178)
362 PRK11629 lolD lipoprotein tran 98.5 2.9E-07 6.2E-12 89.9 9.4 34 296-329 25-58 (233)
363 TIGR02211 LolD_lipo_ex lipopro 98.5 2.6E-07 5.7E-12 89.2 9.0 33 297-329 22-54 (221)
364 cd03216 ABC_Carb_Monos_I This 98.5 3.9E-07 8.5E-12 84.2 9.7 120 296-461 16-140 (163)
365 cd03231 ABC_CcmA_heme_exporter 98.5 1.4E-07 3E-12 90.1 6.9 33 297-329 17-49 (201)
366 TIGR03864 PQQ_ABC_ATP ABC tran 98.5 3.1E-07 6.7E-12 89.8 9.5 33 297-329 18-50 (236)
367 TIGR03608 L_ocin_972_ABC putat 98.5 2.8E-07 6E-12 88.0 8.9 33 297-329 15-47 (206)
368 cd03256 ABC_PhnC_transporter A 98.5 1.8E-07 3.9E-12 91.5 7.6 33 297-329 18-50 (241)
369 cd03235 ABC_Metallic_Cations A 98.5 1.3E-07 2.7E-12 91.0 6.4 33 297-329 16-48 (213)
370 cd03296 ABC_CysA_sulfate_impor 98.5 1.2E-07 2.6E-12 92.9 6.3 33 297-329 19-51 (239)
371 PRK11650 ugpC glycerol-3-phosp 98.5 3.7E-07 8.1E-12 94.9 10.3 149 297-461 21-193 (356)
372 PRK11124 artP arginine transpo 98.5 1.4E-07 3E-12 92.6 6.7 34 296-329 18-51 (242)
373 cd03297 ABC_ModC_molybdenum_tr 98.5 1.6E-07 3.4E-12 90.4 7.0 31 298-329 16-46 (214)
374 KOG1954 Endocytosis/signaling 98.5 6.2E-07 1.3E-11 90.8 11.3 131 302-444 54-230 (532)
375 TIGR01166 cbiO cobalt transpor 98.5 2.8E-07 6E-12 87.1 8.5 33 297-329 9-41 (190)
376 PRK11831 putative ABC transpor 98.5 1.4E-07 3.1E-12 94.2 6.7 33 297-329 24-56 (269)
377 PRK10584 putative ABC transpor 98.5 4.2E-07 9E-12 88.3 9.8 33 297-329 27-59 (228)
378 cd03224 ABC_TM1139_LivF_branch 98.5 1.2E-07 2.6E-12 91.6 5.9 34 296-329 16-49 (222)
379 PRK11432 fbpC ferric transport 98.5 4.3E-07 9.4E-12 94.3 10.2 149 297-461 23-195 (351)
380 COG4108 PrfC Peptide chain rel 98.5 4E-07 8.6E-12 94.2 9.6 124 308-451 14-161 (528)
381 cd01858 NGP_1 NGP-1. Autoanti 98.5 1.4E-07 3.1E-12 86.3 5.8 54 307-363 103-157 (157)
382 COG1135 AbcC ABC-type metal io 98.5 4.1E-07 8.9E-12 90.8 9.2 149 297-461 23-200 (339)
383 PRK10575 iron-hydroxamate tran 98.5 1.7E-07 3.7E-12 93.4 6.5 34 296-329 27-60 (265)
384 PRK11153 metN DL-methionine tr 98.5 2.8E-07 6E-12 95.5 8.2 149 297-461 22-199 (343)
385 TIGR02315 ABC_phnC phosphonate 98.5 2.4E-07 5.1E-12 90.8 7.3 33 297-329 19-51 (243)
386 COG0050 TufB GTPases - transla 98.5 1.1E-06 2.4E-11 86.9 11.7 161 304-484 10-206 (394)
387 PRK10771 thiQ thiamine transpo 98.5 2E-07 4.4E-12 90.8 6.8 32 298-329 17-48 (232)
388 TIGR03740 galliderm_ABC gallid 98.5 1.7E-07 3.6E-12 90.8 6.1 34 296-329 16-49 (223)
389 PRK11000 maltose/maltodextrin 98.5 4.3E-07 9.3E-12 95.0 9.3 149 297-461 20-192 (369)
390 cd01855 YqeH YqeH. YqeH is an 98.5 1.4E-07 3.1E-12 89.0 5.2 54 307-363 128-190 (190)
391 TIGR03265 PhnT2 putative 2-ami 98.5 5.1E-07 1.1E-11 93.8 9.8 149 297-461 21-193 (353)
392 PRK11264 putative amino-acid A 98.5 2.6E-07 5.6E-12 91.0 7.2 33 297-329 20-52 (250)
393 cd03295 ABC_OpuCA_Osmoprotecti 98.5 2.2E-07 4.7E-12 91.2 6.6 33 297-329 18-50 (242)
394 cd03214 ABC_Iron-Siderophores_ 98.5 1.4E-07 3E-12 88.5 5.0 136 296-461 15-156 (180)
395 TIGR02142 modC_ABC molybdenum 98.5 2E-07 4.3E-12 96.9 6.7 148 298-461 15-190 (354)
396 PRK09493 glnQ glutamine ABC tr 98.5 2.3E-07 5.1E-12 90.8 6.8 33 297-329 18-50 (240)
397 COG0411 LivG ABC-type branched 98.5 2.2E-07 4.7E-12 90.0 6.3 155 291-461 15-208 (250)
398 cd03294 ABC_Pro_Gly_Bertaine T 98.5 3.5E-07 7.6E-12 91.4 8.1 33 297-329 41-73 (269)
399 PRK09544 znuC high-affinity zi 98.5 6E-07 1.3E-11 88.9 9.7 147 296-461 20-179 (251)
400 cd03230 ABC_DR_subfamily_A Thi 98.5 4.1E-07 8.9E-12 84.7 7.9 47 296-353 16-62 (173)
401 TIGR02314 ABC_MetN D-methionin 98.5 7E-07 1.5E-11 92.4 10.4 150 296-461 21-199 (343)
402 PRK11300 livG leucine/isoleuci 98.5 2.2E-07 4.8E-12 91.8 6.4 33 297-329 22-54 (255)
403 cd03260 ABC_PstB_phosphate_tra 98.5 3.5E-07 7.6E-12 88.7 7.7 35 296-330 16-50 (227)
404 TIGR03258 PhnT 2-aminoethylpho 98.5 5.8E-07 1.3E-11 93.7 9.7 150 296-461 21-197 (362)
405 TIGR03873 F420-0_ABC_ATP propo 98.5 3.6E-07 7.7E-12 90.5 7.7 34 296-329 17-50 (256)
406 PRK10895 lipopolysaccharide AB 98.5 2.4E-07 5.2E-12 90.8 6.4 33 297-329 20-52 (241)
407 PRK10851 sulfate/thiosulfate t 98.5 5.8E-07 1.3E-11 93.4 9.5 150 296-461 18-195 (353)
408 TIGR01186 proV glycine betaine 98.5 1E-06 2.3E-11 91.7 11.3 150 296-461 9-188 (363)
409 cd03267 ABC_NatA_like Similar 98.5 2.5E-07 5.4E-12 90.6 6.3 33 297-329 38-70 (236)
410 PRK13635 cbiO cobalt transport 98.5 5.9E-07 1.3E-11 90.3 9.2 150 296-461 23-199 (279)
411 TIGR03005 ectoine_ehuA ectoine 98.5 5.3E-07 1.1E-11 89.0 8.7 33 297-329 17-49 (252)
412 PRK13540 cytochrome c biogenes 98.5 4.9E-07 1.1E-11 86.2 8.2 34 296-329 17-50 (200)
413 PRK13641 cbiO cobalt transport 98.5 3E-07 6.5E-12 92.8 7.0 34 296-329 23-56 (287)
414 cd03233 ABC_PDR_domain1 The pl 98.5 4.9E-07 1.1E-11 86.4 8.0 33 297-329 24-56 (202)
415 PRK15177 Vi polysaccharide exp 98.4 4.3E-07 9.4E-12 87.6 7.6 33 297-329 4-36 (213)
416 TIGR00972 3a0107s01c2 phosphat 98.4 5.2E-07 1.1E-11 88.8 8.3 33 297-329 18-50 (247)
417 PRK10762 D-ribose transporter 98.4 3.4E-07 7.4E-12 99.4 7.5 33 297-329 21-53 (501)
418 PRK10253 iron-enterobactin tra 98.4 3.1E-07 6.8E-12 91.5 6.6 33 297-329 24-56 (265)
419 PRK13644 cbiO cobalt transport 98.4 7.8E-07 1.7E-11 89.2 9.5 34 296-329 18-51 (274)
420 PRK13647 cbiO cobalt transport 98.4 2.6E-07 5.7E-12 92.6 6.0 34 296-329 21-54 (274)
421 PRK13652 cbiO cobalt transport 98.4 3.8E-07 8.3E-12 91.5 7.2 34 296-329 20-53 (277)
422 PRK13650 cbiO cobalt transport 98.4 7.4E-07 1.6E-11 89.6 9.3 34 296-329 23-56 (279)
423 PRK11231 fecE iron-dicitrate t 98.4 4.8E-07 1E-11 89.5 7.8 33 297-329 19-51 (255)
424 TIGR00968 3a0106s01 sulfate AB 98.4 4.8E-07 1E-11 88.6 7.6 34 296-329 16-49 (237)
425 PRK10070 glycine betaine trans 98.4 1.2E-06 2.5E-11 92.5 11.1 150 296-461 44-223 (400)
426 PRK13539 cytochrome c biogenes 98.4 6.5E-07 1.4E-11 85.9 8.3 34 296-329 18-51 (207)
427 cd01849 YlqF_related_GTPase Yl 98.4 3.4E-07 7.3E-12 83.7 6.0 56 305-363 99-155 (155)
428 PRK13548 hmuV hemin importer A 98.4 5.6E-07 1.2E-11 89.3 8.0 34 296-329 18-51 (258)
429 PRK13545 tagH teichoic acids e 98.4 4.6E-07 1E-11 97.7 7.8 149 297-461 41-201 (549)
430 cd01858 NGP_1 NGP-1. Autoanti 98.4 1.3E-06 2.9E-11 79.8 9.9 92 377-479 2-95 (157)
431 PRK11144 modC molybdate transp 98.4 1.1E-06 2.4E-11 91.3 10.4 149 297-461 15-187 (352)
432 PRK15439 autoinducer 2 ABC tra 98.4 3.5E-07 7.5E-12 99.6 6.9 149 297-461 28-198 (510)
433 PRK09452 potA putrescine/sperm 98.4 8.9E-07 1.9E-11 92.7 9.7 149 297-461 31-203 (375)
434 cd03215 ABC_Carb_Monos_II This 98.4 7.4E-07 1.6E-11 83.7 8.2 46 297-353 17-62 (182)
435 PRK13646 cbiO cobalt transport 98.4 9.8E-07 2.1E-11 89.0 9.6 34 296-329 23-56 (286)
436 cd01859 MJ1464 MJ1464. This f 98.4 1.5E-06 3.2E-11 79.3 10.0 90 377-480 5-97 (156)
437 COG3839 MalK ABC-type sugar tr 98.4 7.8E-07 1.7E-11 91.1 8.8 151 295-461 18-192 (338)
438 PRK13637 cbiO cobalt transport 98.4 8.4E-07 1.8E-11 89.5 9.0 34 296-329 23-56 (287)
439 TIGR03415 ABC_choXWV_ATP choli 98.4 1.1E-06 2.4E-11 92.1 10.1 150 296-461 40-223 (382)
440 COG1119 ModF ABC-type molybden 98.4 1.1E-06 2.3E-11 85.3 9.2 153 298-463 49-233 (257)
441 TIGR03410 urea_trans_UrtE urea 98.4 2.3E-07 4.9E-12 90.3 4.6 33 297-329 17-49 (230)
442 cd03300 ABC_PotA_N PotA is an 98.4 5.7E-07 1.2E-11 87.7 7.4 33 297-329 17-49 (232)
443 PRK11607 potG putrescine trans 98.4 9.1E-07 2E-11 92.7 9.4 149 297-461 36-208 (377)
444 TIGR02324 CP_lyasePhnL phospho 98.4 4E-07 8.7E-12 88.2 6.2 33 297-329 25-57 (224)
445 PRK13638 cbiO cobalt transport 98.4 2.7E-07 5.8E-12 92.3 5.2 33 297-329 18-50 (271)
446 cd03228 ABCC_MRP_Like The MRP 98.4 1.6E-06 3.5E-11 80.5 9.9 46 297-353 19-64 (171)
447 COG3638 ABC-type phosphate/pho 98.4 1.5E-06 3.3E-11 83.8 9.7 45 297-352 21-65 (258)
448 PF00735 Septin: Septin; Inte 98.4 2.1E-06 4.6E-11 86.4 11.1 123 308-443 6-160 (281)
449 COG1126 GlnQ ABC-type polar am 98.4 1.2E-06 2.7E-11 83.4 8.8 149 297-461 19-194 (240)
450 PRK13636 cbiO cobalt transport 98.4 1.2E-06 2.6E-11 88.2 9.3 34 296-329 22-55 (283)
451 PRK10619 histidine/lysine/argi 98.4 1.1E-06 2.5E-11 86.9 9.0 33 297-329 22-54 (257)
452 PRK13648 cbiO cobalt transport 98.4 1.6E-06 3.5E-11 86.5 10.1 33 297-329 26-58 (269)
453 PRK13639 cbiO cobalt transport 98.4 8.6E-07 1.9E-11 88.9 8.1 34 296-329 18-51 (275)
454 cd03247 ABCC_cytochrome_bd The 98.4 3E-06 6.5E-11 79.3 11.2 128 296-461 18-155 (178)
455 PRK09700 D-allose transporter 98.4 5.2E-07 1.1E-11 98.2 6.9 33 297-329 22-54 (510)
456 PRK14247 phosphate ABC transpo 98.4 2.1E-06 4.6E-11 84.5 10.6 33 297-329 20-52 (250)
457 PRK14250 phosphate ABC transpo 98.4 6.3E-07 1.4E-11 88.0 6.8 33 297-329 20-52 (241)
458 cd03250 ABCC_MRP_domain1 Domai 98.4 1.4E-06 3E-11 83.2 9.0 46 296-352 21-66 (204)
459 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.4 2.4E-06 5.1E-11 77.4 10.0 46 296-352 16-61 (144)
460 PRK13642 cbiO cobalt transport 98.4 1.3E-06 2.8E-11 87.6 9.2 34 296-329 23-56 (277)
461 PRK13634 cbiO cobalt transport 98.4 1.5E-06 3.4E-11 87.8 9.7 34 296-329 23-56 (290)
462 COG1161 Predicted GTPases [Gen 98.4 4.1E-07 8.8E-12 93.4 5.5 56 307-365 133-189 (322)
463 PRK11614 livF leucine/isoleuci 98.4 5.1E-07 1.1E-11 88.3 6.0 34 296-329 21-54 (237)
464 PRK14259 phosphate ABC transpo 98.4 1.8E-06 3.8E-11 86.4 9.8 34 296-329 29-62 (269)
465 cd03213 ABCG_EPDR ABCG transpo 98.4 1.2E-06 2.6E-11 83.2 8.0 130 296-461 25-169 (194)
466 PRK13651 cobalt transporter AT 98.4 5.7E-07 1.2E-11 91.6 6.2 34 296-329 23-56 (305)
467 PRK09563 rbgA GTPase YlqF; Rev 98.3 7.1E-07 1.5E-11 90.1 6.7 58 306-366 121-179 (287)
468 cd03299 ABC_ModC_like Archeal 98.3 1.2E-06 2.5E-11 85.8 8.0 34 296-329 15-48 (235)
469 COG4604 CeuD ABC-type enteroch 98.3 1.2E-06 2.5E-11 82.5 7.4 87 298-395 19-130 (252)
470 PRK14267 phosphate ABC transpo 98.3 1.9E-06 4.1E-11 85.1 9.5 34 296-329 20-53 (253)
471 TIGR03596 GTPase_YlqF ribosome 98.3 6.8E-07 1.5E-11 89.7 6.4 58 306-366 118-176 (276)
472 cd00267 ABC_ATPase ABC (ATP-bi 98.3 2.3E-06 5E-11 78.2 9.3 119 296-461 15-138 (157)
473 PRK15056 manganese/iron transp 98.3 2.5E-06 5.4E-11 85.4 10.3 33 297-329 24-56 (272)
474 TIGR02868 CydC thiol reductant 98.3 1E-06 2.2E-11 96.3 8.1 151 296-462 351-528 (529)
475 cd03246 ABCC_Protease_Secretio 98.3 3.6E-06 7.7E-11 78.4 10.6 130 296-461 18-154 (173)
476 cd01857 HSR1_MMR1 HSR1/MMR1. 98.3 8.5E-07 1.9E-11 79.8 6.0 54 308-364 85-139 (141)
477 PRK13643 cbiO cobalt transport 98.3 7E-07 1.5E-11 90.2 6.0 34 296-329 22-55 (288)
478 cd03257 ABC_NikE_OppD_transpor 98.3 6.8E-07 1.5E-11 86.6 5.7 33 297-329 22-54 (228)
479 PRK10982 galactose/methyl gala 98.3 8.5E-07 1.8E-11 96.1 7.0 33 297-329 15-47 (491)
480 TIGR02769 nickel_nikE nickel i 98.3 9.1E-07 2E-11 88.1 6.6 33 297-329 28-60 (265)
481 cd03234 ABCG_White The White s 98.3 1.6E-06 3.6E-11 84.1 8.2 33 297-329 24-56 (226)
482 cd03222 ABC_RNaseL_inhibitor T 98.3 1.1E-06 2.3E-11 82.6 6.7 42 301-353 20-61 (177)
483 PRK15079 oligopeptide ABC tran 98.3 2.3E-06 4.9E-11 88.3 9.6 33 297-329 38-70 (331)
484 COG1129 MglA ABC-type sugar tr 98.3 1.6E-06 3.5E-11 92.6 8.6 45 297-352 25-69 (500)
485 PRK11701 phnK phosphonate C-P 98.3 1.7E-06 3.7E-11 85.7 8.4 34 296-329 22-55 (258)
486 PRK13649 cbiO cobalt transport 98.3 1.4E-06 3.1E-11 87.4 7.9 33 297-329 24-56 (280)
487 PRK14241 phosphate transporter 98.3 3.6E-06 7.7E-11 83.5 10.6 33 297-329 21-53 (258)
488 PRK10744 pstB phosphate transp 98.3 2.6E-06 5.6E-11 84.6 9.6 33 297-329 30-62 (260)
489 PRK11288 araG L-arabinose tran 98.3 9.1E-07 2E-11 96.1 6.8 33 297-329 21-53 (501)
490 PRK15112 antimicrobial peptide 98.3 6.4E-07 1.4E-11 89.4 5.1 33 297-329 30-62 (267)
491 PRK09700 D-allose transporter 98.3 1.5E-06 3.2E-11 94.7 8.3 34 296-329 279-312 (510)
492 PRK11288 araG L-arabinose tran 98.3 1.4E-06 2.9E-11 94.8 7.9 34 296-329 269-302 (501)
493 PRK14235 phosphate transporter 98.3 4.3E-06 9.3E-11 83.4 10.9 33 297-329 36-68 (267)
494 TIGR02982 heterocyst_DevA ABC 98.3 1.4E-06 2.9E-11 84.3 7.1 33 297-329 22-54 (220)
495 PRK14251 phosphate ABC transpo 98.3 3E-06 6.4E-11 83.6 9.5 33 297-329 21-53 (251)
496 PRK09984 phosphonate/organopho 98.3 2.3E-06 5E-11 85.0 8.8 34 297-330 21-54 (262)
497 PRK14254 phosphate ABC transpo 98.3 2.6E-06 5.7E-11 85.9 9.3 33 297-329 56-88 (285)
498 PRK10247 putative ABC transpor 98.3 1.3E-06 2.8E-11 84.9 6.8 34 296-329 23-56 (225)
499 PRK13549 xylose transporter AT 98.3 1.1E-06 2.5E-11 95.5 7.1 33 297-329 22-54 (506)
500 TIGR02323 CP_lyasePhnK phospho 98.3 1.7E-06 3.8E-11 85.3 7.7 34 297-330 20-53 (253)
No 1
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=100.00 E-value=4.2e-88 Score=666.84 Aligned_cols=329 Identities=46% Similarity=0.743 Sum_probs=298.3
Q ss_pred CCceeEEEEEEEeCCCCCccccccccccccCCCCCCCCCCCcceEEEEccCCcccccccc--ceEEcCCCCCCCCCCCCC
Q 011082 47 TRMRDRFTIYAKGGDGGSGCCSFRRSRHLRRGKPDGGNGGRGGDVILECSPSVWDFRSLQ--HHLRAGKGGHGAPKNMIG 124 (494)
Q Consensus 47 ~~f~D~~~i~v~~G~GG~G~~sf~r~~~~~~g~p~GG~GG~GG~v~~~~~~~~~~l~~~~--~~~~a~~G~~G~~~~~~G 124 (494)
++|||+++|+|+||+|||||||||||||+|+|||||||||+||||||+|+++++||.+++ ++|+|+||+||++++|+|
T Consensus 1 m~FvD~~~I~v~aG~GGnG~VSFrREK~vp~GGPdGGdGG~GGsV~~~ad~~l~TL~d~r~~~~f~A~~G~~G~~~~~~G 80 (369)
T COG0536 1 MKFVDEVKIEVKAGDGGNGCVSFRREKFVPKGGPDGGDGGRGGSVIFEADENLNTLIDFRYKKHFKAENGENGMGRNRTG 80 (369)
T ss_pred CCcceEEEEEEEecCCCCeeEEEEhhhcCccCCCCCCCCCCCceEEEEEcCCcccHhhhccceEEEccCCCCCCCCCCCC
Confidence 579999999999999999999999999999999999999999999999999999998875 999999999999999999
Q ss_pred CCCCCEEEEcCCccEEEeccCCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCchhhccccCCCCCCcccc
Q 011082 125 TCGEDKVVLVPVGTVIHLIEGEIPSMVDNRSESDLDPWERPGSLVDDPSLSNQQTTIQNPSVPEEVKSTCKNDSSSSHTE 204 (494)
Q Consensus 125 ~~g~d~~i~vP~Gt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (494)
++|+|++|+||+||+|++. +|+
T Consensus 81 ~~G~Dl~i~VP~GT~v~d~----------------------------------~t~------------------------ 102 (369)
T COG0536 81 AKGKDLVIKVPVGTVVRDE----------------------------------DTG------------------------ 102 (369)
T ss_pred CCCCceEEEcCCCCEEEeC----------------------------------CCC------------------------
Confidence 9999999999999999973 122
Q ss_pred ccccchhhhhhhhhhhHhhhhhhhhhhcccccCCcEEEEccCCCCCcCCccccCCCCCchhcccccccCCCCCCcccccc
Q 011082 205 ITSKASTNLQHATQAEQEGEKQIQYNIAELTKQGQRVIIAYGGEGGLGNVCCPSVSKKPMVMKSKSYKNGPSDPKLASDD 284 (494)
Q Consensus 205 ~~~~l~iF~~~A~t~e~~ela~l~~~l~~l~~~~~~~~~~~GG~GG~Gn~~~~~~~~~~~~~~~~~~~~ri~~l~~~~~~ 284 (494)
.+++||+.++|++++|+||.||+||++|+++++ +++..
T Consensus 103 ------------------------e~i~Dl~~~gq~~~~akGG~GG~GN~~Fks~~n-----rAP~~------------- 140 (369)
T COG0536 103 ------------------------ELLADLTEHGQRFLVAKGGRGGLGNAHFKSSVN-----RAPRF------------- 140 (369)
T ss_pred ------------------------eEehhhccCCcEEEEEcCCCCCccchhhcCccc-----CCccc-------------
Confidence 178899999999999999999999999999998 44432
Q ss_pred cccccCCCCCceeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC-cceEEecCCCc
Q 011082 285 QSSLVAGEPGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD-IQITVADIPGL 363 (494)
Q Consensus 285 ~~~~~~g~~ge~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~l~DtPGl 363 (494)
.+.|++||++.+.|||+.+++|+|||+|||||||||+++++++|+|++|||||+.|+.|++.+.+ .+|+++|+||+
T Consensus 141 ---a~~G~~Ge~r~v~LELKllADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGL 217 (369)
T COG0536 141 ---ATPGEPGEERDLRLELKLLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGL 217 (369)
T ss_pred ---CCCCCCCceEEEEEEEeeecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCccc
Confidence 26899999999999999999999999999999999999999999999999999999999999854 67999999999
Q ss_pred cCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHH
Q 011082 364 IKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV 443 (494)
Q Consensus 364 i~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~ 443 (494)
|++|+++.+|++.||+|+++|.+|+||+|++... ..+|.++++.+..||..|++.|.++|.|||+||+|+...++.
T Consensus 218 IEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~----~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~ 293 (369)
T COG0536 218 IEGASEGVGLGLRFLRHIERTRVLLHVIDLSPID----GRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEE 293 (369)
T ss_pred ccccccCCCccHHHHHHHHhhheeEEEEecCccc----CCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHH
Confidence 9999999999999999999999999999999732 257899999999999999999999999999999997766655
Q ss_pred HHHHHHHcC---CCC-EEEEEcccCCCHHHHHHHHHHHhcccC
Q 011082 444 YEELERRVQ---GVP-IYPVCAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 444 ~~~L~~~~~---~~~-ii~ISA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
.+.+.+.+. .+. .++|||.+++|+++|+..+.+++.+..
T Consensus 294 ~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 294 LEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred HHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 555555441 222 223999999999999999999988764
No 2
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=1.5e-77 Score=612.74 Aligned_cols=325 Identities=46% Similarity=0.756 Sum_probs=291.3
Q ss_pred CceeEEEEEEEeCCCCCccccccccccccCCCCCCCCCCCcceEEEEccCCccccccc--cceEEcCCCCCCCCCCCCCC
Q 011082 48 RMRDRFTIYAKGGDGGSGCCSFRRSRHLRRGKPDGGNGGRGGDVILECSPSVWDFRSL--QHHLRAGKGGHGAPKNMIGT 125 (494)
Q Consensus 48 ~f~D~~~i~v~~G~GG~G~~sf~r~~~~~~g~p~GG~GG~GG~v~~~~~~~~~~l~~~--~~~~~a~~G~~G~~~~~~G~ 125 (494)
+|||+++|+|+||+|||||+|||||||+|+|||||||||+||||||+|++++++|.++ +++|+|+||++|++++++|+
T Consensus 1 ~f~d~~~i~~~~g~gg~g~~~f~r~~~~~~ggp~gg~gg~gg~v~~~~~~~~~~l~~~~~~~~~~a~~g~~g~~~~~~g~ 80 (335)
T PRK12299 1 KFIDEAKIYVKAGDGGNGCVSFRREKFIPFGGPDGGDGGRGGSVILEADENLNTLIDFRYKRHFKAENGENGMGRNRTGK 80 (335)
T ss_pred CceEEEEEEEEecCCCCceeeEehhhcccCCCCCCCCCCCCCEEEEEECCCcChhhhhcCccEEECCCCCCCCCCCCCCC
Confidence 5999999999999999999999999999999999999999999999999999999987 57999999999999999999
Q ss_pred CCCCEEEEcCCccEEEeccCCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCchhhccccCCCCCCccccc
Q 011082 126 CGEDKVVLVPVGTVIHLIEGEIPSMVDNRSESDLDPWERPGSLVDDPSLSNQQTTIQNPSVPEEVKSTCKNDSSSSHTEI 205 (494)
Q Consensus 126 ~g~d~~i~vP~Gt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (494)
+|+|++|+||+||+|++.+ ++
T Consensus 81 ~g~d~~~~vp~gt~v~~~~----------------------------------~~------------------------- 101 (335)
T PRK12299 81 SGKDLVLKVPVGTQIYDAD----------------------------------TG------------------------- 101 (335)
T ss_pred CCCceEEEeCCCCEEEECC----------------------------------CC-------------------------
Confidence 9999999999999999621 11
Q ss_pred cccchhhhhhhhhhhHhhhhhhhhhhcccccCCcEEEEccCCCCCcCCccccCCCCCchhcccccccCCCCCCccccccc
Q 011082 206 TSKASTNLQHATQAEQEGEKQIQYNIAELTKQGQRVIIAYGGEGGLGNVCCPSVSKKPMVMKSKSYKNGPSDPKLASDDQ 285 (494)
Q Consensus 206 ~~~l~iF~~~A~t~e~~ela~l~~~l~~l~~~~~~~~~~~GG~GG~Gn~~~~~~~~~~~~~~~~~~~~ri~~l~~~~~~~ 285 (494)
.++++|..+++.+++|+||.||+||.+|+++++ +++..
T Consensus 102 -----------------------~~~~d~~~~~~~~~~a~gg~gg~gn~~f~~~~~-----~~p~~-------------- 139 (335)
T PRK12299 102 -----------------------ELIADLTEHGQRFLVAKGGKGGLGNAHFKSSTN-----RAPRY-------------- 139 (335)
T ss_pred -----------------------cEEEEcCCCCcEEEEecCCCCcCCchhhccccC-----CCCcc--------------
Confidence 167899999999999999999999999999988 34321
Q ss_pred ccccCCCCCceeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeec-CcceEEecCCCcc
Q 011082 286 SSLVAGEPGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD-DIQITVADIPGLI 364 (494)
Q Consensus 286 ~~~~~g~~ge~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~-~~~~~l~DtPGli 364 (494)
.+.|++|+++.+.|||+.+++|+|||+||||||||||+|+++++.+++|+|||+.|+.|.+.+. +.+++++||||++
T Consensus 140 --~~~g~~g~~~~~~lelk~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli 217 (335)
T PRK12299 140 --ATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLI 217 (335)
T ss_pred --ccCCCCCcEEEEEEEEcccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCcc
Confidence 2679999999999999999999999999999999999999999999999999999999999984 4789999999999
Q ss_pred CCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHH
Q 011082 365 KGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVY 444 (494)
Q Consensus 365 ~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~ 444 (494)
++++++.++++.|++|+++|+++++|+|+++ .++++.+..|..+|..|.+.+.++|.|+|+||+|+....+..
T Consensus 218 ~ga~~~~gLg~~flrhie~a~vlI~ViD~s~-------~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~ 290 (335)
T PRK12299 218 EGASEGAGLGHRFLKHIERTRLLLHLVDIEA-------VDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEER 290 (335)
T ss_pred CCCCccccHHHHHHHHhhhcCEEEEEEcCCC-------CCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHH
Confidence 9999999999999999999999999999987 246889999999999998777889999999999997654322
Q ss_pred H-HHHHHc--CCCCEEEEEcccCCCHHHHHHHHHHHhcccC
Q 011082 445 E-ELERRV--QGVPIYPVCAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 445 ~-~L~~~~--~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
. .+.... .+.++++|||++++||++|+++|.+.+.+.+
T Consensus 291 ~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 291 EKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEEAR 331 (335)
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHhhh
Confidence 2 222211 2468999999999999999999999887644
No 3
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=5e-77 Score=623.40 Aligned_cols=328 Identities=44% Similarity=0.728 Sum_probs=296.9
Q ss_pred CceeEEEEEEEeCCCCCccccccccccccCCCCCCCCCCCcceEEEEccCCccccccc--cceEEcCCCCCCCCCCCCCC
Q 011082 48 RMRDRFTIYAKGGDGGSGCCSFRRSRHLRRGKPDGGNGGRGGDVILECSPSVWDFRSL--QHHLRAGKGGHGAPKNMIGT 125 (494)
Q Consensus 48 ~f~D~~~i~v~~G~GG~G~~sf~r~~~~~~g~p~GG~GG~GG~v~~~~~~~~~~l~~~--~~~~~a~~G~~G~~~~~~G~ 125 (494)
+|||+++|+|+||+|||||+|||||||+|+|||||||||+||||||+|+++++||.++ +++|+|+||+||++++++|+
T Consensus 1 ~f~D~~~i~v~aG~GG~G~~sf~rek~~~~ggp~gG~GG~GG~v~~~~~~~~~tl~~~~~~~~~~a~~G~~g~~~~~~G~ 80 (424)
T PRK12297 1 MFIDQAKIYVKAGDGGDGMVSFRREKYVPKGGPDGGDGGKGGSVIFVADEGLRTLLDFRYKRHFKAENGENGMGKNMHGR 80 (424)
T ss_pred CceEEEEEEEEecCCCCceeeEEhhhcccCCCCCCCCCCCCCEEEEEECCCcChhhhhcCccEEEcCCCCCCCCCCCCCC
Confidence 4999999999999999999999999999999999999999999999999999999887 58899999999999999999
Q ss_pred CCCCEEEEcCCccEEEeccCCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCchhhccccCCCCCCccccc
Q 011082 126 CGEDKVVLVPVGTVIHLIEGEIPSMVDNRSESDLDPWERPGSLVDDPSLSNQQTTIQNPSVPEEVKSTCKNDSSSSHTEI 205 (494)
Q Consensus 126 ~g~d~~i~vP~Gt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (494)
+|+|++|+||+||+|++.+ ++
T Consensus 81 ~g~d~~i~vP~Gt~v~~~~----------------------------------~~------------------------- 101 (424)
T PRK12297 81 NGEDLIIKVPVGTVVKDAE----------------------------------TG------------------------- 101 (424)
T ss_pred CCCeeEEecCCCCEEEECC----------------------------------CC-------------------------
Confidence 9999999999999999621 11
Q ss_pred cccchhhhhhhhhhhHhhhhhhhhhhcccccCCcEEEEccCCCCCcCCccccCCCCCchhcccccccCCCCCCccccccc
Q 011082 206 TSKASTNLQHATQAEQEGEKQIQYNIAELTKQGQRVIIAYGGEGGLGNVCCPSVSKKPMVMKSKSYKNGPSDPKLASDDQ 285 (494)
Q Consensus 206 ~~~l~iF~~~A~t~e~~ela~l~~~l~~l~~~~~~~~~~~GG~GG~Gn~~~~~~~~~~~~~~~~~~~~ri~~l~~~~~~~ 285 (494)
.++++|..+++.+++|+||.||+||++|.++++ +++.+
T Consensus 102 -----------------------~~~~dl~~~~~~~~va~GG~gG~gn~~F~~s~~-----~~p~~-------------- 139 (424)
T PRK12297 102 -----------------------EVIADLVEPGQEVVVAKGGRGGRGNAHFATSTN-----QAPRI-------------- 139 (424)
T ss_pred -----------------------cEEeeeccCCcEEEEECCCCCCcCchhhcCCCC-----CCCCc--------------
Confidence 167899999999999999999999999999888 33322
Q ss_pred ccccCCCCCceeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeec-CcceEEecCCCcc
Q 011082 286 SSLVAGEPGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD-DIQITVADIPGLI 364 (494)
Q Consensus 286 ~~~~~g~~ge~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~-~~~~~l~DtPGli 364 (494)
...|.+|+++.+.|||+.+++|+|||+|||||||||++|+++++++++|||||+.|+.+.+.++ +.+++++||||++
T Consensus 140 --~~~G~~ge~~~~~lelk~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGli 217 (424)
T PRK12297 140 --AENGEPGEERELRLELKLLADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLI 217 (424)
T ss_pred --CCCCCCCeEeEEEEeecccCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCc
Confidence 2579999999999999999999999999999999999999999999999999999999999988 6899999999999
Q ss_pred CCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHH
Q 011082 365 KGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVY 444 (494)
Q Consensus 365 ~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~ 444 (494)
++++++.+|++.|++|+++|+++|||+|+++.. ..++.+.+..+..+|..|.+.+..+|.|||+||+|+....+..
T Consensus 218 ega~~~~gLg~~fLrhier~~llI~VID~s~~~----~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l 293 (424)
T PRK12297 218 EGASEGVGLGHQFLRHIERTRVIVHVIDMSGSE----GRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENL 293 (424)
T ss_pred ccccccchHHHHHHHHHhhCCEEEEEEeCCccc----cCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHH
Confidence 999999999999999999999999999998621 2468889999999999998878899999999999987655555
Q ss_pred HHHHHHcCCCCEEEEEcccCCCHHHHHHHHHHHhcccCC
Q 011082 445 EELERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNGEKS 483 (494)
Q Consensus 445 ~~L~~~~~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~~ 483 (494)
+.+.+.+. .++++|||++++|+++|+++|.+.+.+.+.
T Consensus 294 ~~l~~~l~-~~i~~iSA~tgeGI~eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 294 EEFKEKLG-PKVFPISALTGQGLDELLYAVAELLEETPE 331 (424)
T ss_pred HHHHHHhC-CcEEEEeCCCCCCHHHHHHHHHHHHHhCcc
Confidence 66666554 689999999999999999999999876543
No 4
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=2.3e-76 Score=625.45 Aligned_cols=329 Identities=46% Similarity=0.725 Sum_probs=293.6
Q ss_pred CCceeEEEEEEEeCCCCCccccccccccccCCCCCCCCCCCcceEEEEccCCccccccc--cceEEcCCCCCCCCCCCCC
Q 011082 47 TRMRDRFTIYAKGGDGGSGCCSFRRSRHLRRGKPDGGNGGRGGDVILECSPSVWDFRSL--QHHLRAGKGGHGAPKNMIG 124 (494)
Q Consensus 47 ~~f~D~~~i~v~~G~GG~G~~sf~r~~~~~~g~p~GG~GG~GG~v~~~~~~~~~~l~~~--~~~~~a~~G~~G~~~~~~G 124 (494)
++|||+++|+|+||+|||||+||+||||+|+|||||||||+||||||+++++++||.++ +++|+|+||+||++++++|
T Consensus 2 ~~fvD~~~i~v~aG~GG~G~~sf~rek~~~~ggpdGG~GG~GG~v~~~~~~~~~tl~~~~~~~~~~a~~G~~G~~~~~~G 81 (500)
T PRK12296 2 PRFVDRVVLHVKAGDGGNGCASVHREKFKPLGGPDGGNGGRGGSVVLVVDPQVTTLLDFHFRPHRKATNGKPGMGDNRDG 81 (500)
T ss_pred CCcEEEEEEEEEecCCCCcceeeehhhcccCCCCCCCCCCCCCEEEEEECCCcCchHHhccCceEECCCCCCCCCCCCCC
Confidence 46999999999999999999999999999999999999999999999999999998876 6799999999999999999
Q ss_pred CCCCCEEEEcCCccEEEeccCCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCchhhccccCCCCCCcccc
Q 011082 125 TCGEDKVVLVPVGTVIHLIEGEIPSMVDNRSESDLDPWERPGSLVDDPSLSNQQTTIQNPSVPEEVKSTCKNDSSSSHTE 204 (494)
Q Consensus 125 ~~g~d~~i~vP~Gt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (494)
++|+|++|+||+||+|++. ++
T Consensus 82 ~~g~d~~i~VP~Gt~v~~~-----------------------------------~~------------------------ 102 (500)
T PRK12296 82 AAGEDLVLPVPDGTVVLDE-----------------------------------DG------------------------ 102 (500)
T ss_pred CCCCceEEecCCCcEEEcC-----------------------------------CC------------------------
Confidence 9999999999999999852 11
Q ss_pred ccccchhhhhhhhhhhHhhhhhhhhhhcccccCCcEEEEccCCCCCcCCccccCCCCCchhcccccccCCCCCCcccccc
Q 011082 205 ITSKASTNLQHATQAEQEGEKQIQYNIAELTKQGQRVIIAYGGEGGLGNVCCPSVSKKPMVMKSKSYKNGPSDPKLASDD 284 (494)
Q Consensus 205 ~~~~l~iF~~~A~t~e~~ela~l~~~l~~l~~~~~~~~~~~GG~GG~Gn~~~~~~~~~~~~~~~~~~~~ri~~l~~~~~~ 284 (494)
.++++|..+++.+++|+||.||+||.+|+++++ +++..
T Consensus 103 ------------------------~~~~dl~~~g~~~~~a~GG~GG~Gn~~f~~~~~-----~~p~~------------- 140 (500)
T PRK12296 103 ------------------------EVLADLVGAGTRFVAAAGGRGGLGNAALASKAR-----KAPGF------------- 140 (500)
T ss_pred ------------------------cEEeeeccCCCEEEEEccCCCcCCCcccCCccC-----CCCcc-------------
Confidence 167899999999999999999999999999888 34422
Q ss_pred cccccCCCCCceeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCcc
Q 011082 285 QSSLVAGEPGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLI 364 (494)
Q Consensus 285 ~~~~~~g~~ge~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli 364 (494)
...|++|+++.+.|||+.+++|+|||+||||||||||+|+++++.+++|||||+.|+.+.+.+.+..|+++||||++
T Consensus 141 ---~~~G~~Ge~~~~~leLk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGli 217 (500)
T PRK12296 141 ---ALLGEPGEERDLVLELKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLI 217 (500)
T ss_pred ---ccCCCCCceEEEEEEecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCc
Confidence 25799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhc---------ccCCCCEEEEEeCC
Q 011082 365 KGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQE---------GLSDRPSLVVANKI 435 (494)
Q Consensus 365 ~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~---------~l~~~P~IlVlNKi 435 (494)
++++++.++++.|++|+++||+||||+|+++.. ...++..++..+..+|..|.+ .+..+|.|||+||+
T Consensus 218 egas~g~gLg~~fLrhieradvLv~VVD~s~~e---~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKi 294 (500)
T PRK12296 218 PGASEGKGLGLDFLRHIERCAVLVHVVDCATLE---PGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKI 294 (500)
T ss_pred cccchhhHHHHHHHHHHHhcCEEEEEECCcccc---cccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECc
Confidence 999999999999999999999999999998521 113577888888889988875 46789999999999
Q ss_pred CcCChHHHHHHHHHHc--CCCCEEEEEcccCCCHHHHHHHHHHHhcccC
Q 011082 436 DEDGAEEVYEELERRV--QGVPIYPVCAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 436 Dl~~~~e~~~~L~~~~--~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
|+++..+..+.+...+ .+.++++|||++++||++|+.+|.+++...+
T Consensus 295 DL~da~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 295 DVPDARELAEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred cchhhHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 9987655444444333 2568999999999999999999999987654
No 5
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=100.00 E-value=2.1e-75 Score=596.44 Aligned_cols=322 Identities=47% Similarity=0.782 Sum_probs=289.3
Q ss_pred ceeEEEEEEEeCCCCCccccccccccccCCCCCCCCCCCcceEEEEccCCccccccc--cceEEcCCCCCCCCCCCCCCC
Q 011082 49 MRDRFTIYAKGGDGGSGCCSFRRSRHLRRGKPDGGNGGRGGDVILECSPSVWDFRSL--QHHLRAGKGGHGAPKNMIGTC 126 (494)
Q Consensus 49 f~D~~~i~v~~G~GG~G~~sf~r~~~~~~g~p~GG~GG~GG~v~~~~~~~~~~l~~~--~~~~~a~~G~~G~~~~~~G~~ 126 (494)
|||+++|+|+||+|||||+||+||||+|+|||||||||+||||||+|++++++|.++ +++|+|+||++|++++++|++
T Consensus 1 f~D~~~i~~~~g~gg~g~~~f~r~~~~~~ggp~gg~gg~gg~v~~~~~~~~~~l~~~~~~~~~~a~~g~~g~~~~~~g~~ 80 (329)
T TIGR02729 1 FVDEAKIFVKAGDGGNGCVSFRREKYVPKGGPDGGDGGRGGSVILEADENLNTLLDFRYQRHFKAENGENGMGKNRTGKN 80 (329)
T ss_pred CeEEEEEEEEecCCCCceeeEEeeccccCCCCCCCCCCCCCEEEEEECCCcChhhhccCCcEEEcCCCCCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999987 678999999999999999999
Q ss_pred CCCEEEEcCCccEEEeccCCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCchhhccccCCCCCCcccccc
Q 011082 127 GEDKVVLVPVGTVIHLIEGEIPSMVDNRSESDLDPWERPGSLVDDPSLSNQQTTIQNPSVPEEVKSTCKNDSSSSHTEIT 206 (494)
Q Consensus 127 g~d~~i~vP~Gt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (494)
|+|++|+||+||+|++.+ ++
T Consensus 81 g~d~~~~vp~gt~v~~~~----------------------------------~~-------------------------- 100 (329)
T TIGR02729 81 GEDLVIKVPVGTVVYDAD----------------------------------TG-------------------------- 100 (329)
T ss_pred CCceEEEeCCCCEEEECC----------------------------------CC--------------------------
Confidence 999999999999999621 11
Q ss_pred ccchhhhhhhhhhhHhhhhhhhhhhcccccCCcEEEEccCCCCCcCCccccCCCCCchhcccccccCCCCCCcccccccc
Q 011082 207 SKASTNLQHATQAEQEGEKQIQYNIAELTKQGQRVIIAYGGEGGLGNVCCPSVSKKPMVMKSKSYKNGPSDPKLASDDQS 286 (494)
Q Consensus 207 ~~l~iF~~~A~t~e~~ela~l~~~l~~l~~~~~~~~~~~GG~GG~Gn~~~~~~~~~~~~~~~~~~~~ri~~l~~~~~~~~ 286 (494)
.++++|..+++.+++|+||.||+||.+|+++++ +++..
T Consensus 101 ----------------------~~~~~~~~~~~~~~~a~gg~gg~gn~~f~~~~~-----~~p~~--------------- 138 (329)
T TIGR02729 101 ----------------------ELLADLTEPGQRFVVAKGGRGGLGNAHFKSSTN-----RAPRF--------------- 138 (329)
T ss_pred ----------------------cEEeEeccCCcEEEecCCCCCCCCcccccCccC-----CCCcc---------------
Confidence 167899999999999999999999999999888 33321
Q ss_pred cccCCCCCceeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC-cceEEecCCCccC
Q 011082 287 SLVAGEPGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD-IQITVADIPGLIK 365 (494)
Q Consensus 287 ~~~~g~~ge~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~l~DtPGli~ 365 (494)
.+.|++|+++.+.|||+.+++|+|||+|||||||||++|++.++.+++|+|||+.|+.+.+.+++ ..+.++||||+++
T Consensus 139 -~~~g~~g~~~~~~lelk~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~ 217 (329)
T TIGR02729 139 -ATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIE 217 (329)
T ss_pred -cCCCCCCcEEEEEEEeeccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCccc
Confidence 26799999999999999999999999999999999999999999999999999999999999987 8999999999999
Q ss_pred CccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHH--
Q 011082 366 GAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV-- 443 (494)
Q Consensus 366 ~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~-- 443 (494)
+++.+.++++.|++|+++|+++|+|+|+++.. ..++.+++..+..+|..|.+.+.++|.|+|+||+|+......
T Consensus 218 ~a~~~~gLg~~flrhierad~ll~VvD~s~~~----~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~ 293 (329)
T TIGR02729 218 GASEGAGLGHRFLKHIERTRVLLHLIDISPLD----GRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAE 293 (329)
T ss_pred CCcccccHHHHHHHHHHhhCEEEEEEcCcccc----ccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHH
Confidence 99998899999999999999999999998621 126788999999999988777789999999999999875432
Q ss_pred -HHHHHHHcCCCCEEEEEcccCCCHHHHHHHHHHHh
Q 011082 444 -YEELERRVQGVPIYPVCAVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 444 -~~~L~~~~~~~~ii~ISA~~g~gI~~L~~~I~~~l 478 (494)
.+.+.+.+ +.++++|||++++|+++|+++|.+.+
T Consensus 294 ~~~~l~~~~-~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 294 LLKELKKAL-GKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred HHHHHHHHc-CCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 22333333 46899999999999999999998876
No 6
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=1.6e-75 Score=608.85 Aligned_cols=330 Identities=42% Similarity=0.668 Sum_probs=292.3
Q ss_pred CCceeEEEEEEEeCCCCCccccccccccccCCCCCCCCCCCcceEEEEccCCccccccc--cceEEcCCCCCCCCCCCCC
Q 011082 47 TRMRDRFTIYAKGGDGGSGCCSFRRSRHLRRGKPDGGNGGRGGDVILECSPSVWDFRSL--QHHLRAGKGGHGAPKNMIG 124 (494)
Q Consensus 47 ~~f~D~~~i~v~~G~GG~G~~sf~r~~~~~~g~p~GG~GG~GG~v~~~~~~~~~~l~~~--~~~~~a~~G~~G~~~~~~G 124 (494)
++|||+++|+|+||+|||||+||+||||+|+|||||||||+||||||+|++++++|.++ +++|+|+||++|++++++|
T Consensus 1 ~~f~D~~~i~~~~G~GG~g~~~f~r~~~~~~ggp~gg~GG~Gg~v~~~~~~~~~~l~~~~~~~~~~a~~G~~g~~~~~~g 80 (390)
T PRK12298 1 MKFVDEAKIRVVAGDGGNGCVSFRREKYIPKGGPDGGDGGDGGDVYLEADENLNTLIDYRFERHFRAERGQNGQGRDCTG 80 (390)
T ss_pred CCceEEEEEEEEecCCCCceeeEehhhcccCCCCCCCCCCCCCEEEEEECCCcChhhhhcCCceEEcCCCCCCCCCCCCC
Confidence 46999999999999999999999999999999999999999999999999999999987 5789999999999999999
Q ss_pred CCCCCEEEEcCCccEEEeccCCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCchhhccccCCCCCCcccc
Q 011082 125 TCGEDKVVLVPVGTVIHLIEGEIPSMVDNRSESDLDPWERPGSLVDDPSLSNQQTTIQNPSVPEEVKSTCKNDSSSSHTE 204 (494)
Q Consensus 125 ~~g~d~~i~vP~Gt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (494)
++|+|++|+||+||+|++.+ ++
T Consensus 81 ~~g~d~~i~vP~gt~v~~~~----------------------------------~~------------------------ 102 (390)
T PRK12298 81 KRGKDITIKVPVGTRVIDAD----------------------------------TG------------------------ 102 (390)
T ss_pred CCCCceEEEcCCCCEEEeCC----------------------------------CC------------------------
Confidence 99999999999999999621 11
Q ss_pred ccccchhhhhhhhhhhHhhhhhhhhhhcccccCCcEEEEccCCCCCcCCccccCCCCCchhcccccccCCCCCCcccccc
Q 011082 205 ITSKASTNLQHATQAEQEGEKQIQYNIAELTKQGQRVIIAYGGEGGLGNVCCPSVSKKPMVMKSKSYKNGPSDPKLASDD 284 (494)
Q Consensus 205 ~~~~l~iF~~~A~t~e~~ela~l~~~l~~l~~~~~~~~~~~GG~GG~Gn~~~~~~~~~~~~~~~~~~~~ri~~l~~~~~~ 284 (494)
.++++|..+++.+++|+||.||+||.+|+++++ +.+.
T Consensus 103 ------------------------~~~~d~~~~~~~~~~a~GG~gG~gn~~f~~~~~-----~~p~-------------- 139 (390)
T PRK12298 103 ------------------------EVIGDLTEHGQRLLVAKGGWHGLGNTRFKSSVN-----RAPR-------------- 139 (390)
T ss_pred ------------------------cEEEEeccCCcEEEEecCCCCccchhhhccCcc-----CCCc--------------
Confidence 167899999999999999999999999999887 3332
Q ss_pred cccccCCCCCceeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC-cceEEecCCCc
Q 011082 285 QSSLVAGEPGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD-IQITVADIPGL 363 (494)
Q Consensus 285 ~~~~~~g~~ge~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~l~DtPGl 363 (494)
....|++|+++.+.|||+.+++|+|||+||||||||||+|+++++.+++|||||+.|..|.+.+++ ..++++||||+
T Consensus 140 --~~~~g~~g~~~~~~lelk~iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi 217 (390)
T PRK12298 140 --QKTPGTPGEERELKLELKLLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGL 217 (390)
T ss_pred --ccCCCCCCceEEEEEeeeccccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCc
Confidence 125799999999999999999999999999999999999999999999999999999999999886 56999999999
Q ss_pred cCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHH
Q 011082 364 IKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV 443 (494)
Q Consensus 364 i~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~ 443 (494)
+++++++.+|+..|++|++++|++++|+|++... ..++.+.+..++.++..|.+.+..+|.|+|+||+|+....+.
T Consensus 218 ~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~----~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el 293 (390)
T PRK12298 218 IEGASEGAGLGIRFLKHLERCRVLLHLIDIAPID----GSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA 293 (390)
T ss_pred cccccchhhHHHHHHHHHHhCCEEEEEeccCccc----ccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH
Confidence 9999988889999999999999999999987310 135778888999999998888889999999999999876544
Q ss_pred HHHH---HHHcC-CCCEEEEEcccCCCHHHHHHHHHHHhcccCC
Q 011082 444 YEEL---ERRVQ-GVPIYPVCAVLEEGVPELKVGLRMLVNGEKS 483 (494)
Q Consensus 444 ~~~L---~~~~~-~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~~ 483 (494)
.+.+ .+.+. ..++++|||++++|+++|++.|.+++.+.+.
T Consensus 294 ~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~~~ 337 (390)
T PRK12298 294 EERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEENPR 337 (390)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhCcc
Confidence 3333 33332 2378999999999999999999999977543
No 7
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=100.00 E-value=1.4e-73 Score=556.93 Aligned_cols=323 Identities=51% Similarity=0.761 Sum_probs=296.5
Q ss_pred CceeEEEEEEEeCCCCCccccccccccccCCCCCCCCCCCcceEEEEcc-CCccccccccceEEcCCCCCCCCCCCCCCC
Q 011082 48 RMRDRFTIYAKGGDGGSGCCSFRRSRHLRRGKPDGGNGGRGGDVILECS-PSVWDFRSLQHHLRAGKGGHGAPKNMIGTC 126 (494)
Q Consensus 48 ~f~D~~~i~v~~G~GG~G~~sf~r~~~~~~g~p~GG~GG~GG~v~~~~~-~~~~~l~~~~~~~~a~~G~~G~~~~~~G~~ 126 (494)
.|+|..+|+|+||+||+||+||+|+.+.|+|||||||||+||+||++|+ ..+.+|.+....++|++|++|++.+++|.+
T Consensus 40 ~fiD~~rv~~kgG~GG~G~ssf~~~~~~~~g~PdGGdGG~GG~V~~~a~~~~~~~l~~~~s~~~a~~Ge~~~s~~~~g~~ 119 (366)
T KOG1489|consen 40 NFIDKRRVRIKGGSGGSGASSFFRGYRRPRGGPDGGDGGNGGHVYFVAKPGAFKQLSHVGSLIQAPNGENGKSKMCHGSN 119 (366)
T ss_pred hhheeeeEEeeccCCCCccchhhhhcccccCCCCCCCCCCCceEEEEeCcccccccccCCceEEccCCCcCccccccCCC
Confidence 7999999999999999999999999999999999999999999999999 678888888899999999999999999999
Q ss_pred CCCEEEEcCCccEEEeccCCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCchhhccccCCCCCCcccccc
Q 011082 127 GEDKVVLVPVGTVIHLIEGEIPSMVDNRSESDLDPWERPGSLVDDPSLSNQQTTIQNPSVPEEVKSTCKNDSSSSHTEIT 206 (494)
Q Consensus 127 g~d~~i~vP~Gt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (494)
|++.+|+||+||+|++++.
T Consensus 120 ak~~~i~VP~Gt~v~d~~~------------------------------------------------------------- 138 (366)
T KOG1489|consen 120 AKHSEIRVPVGTVVKDIEQ------------------------------------------------------------- 138 (366)
T ss_pred cceEEEecCCccEEeeccc-------------------------------------------------------------
Confidence 9999999999999986411
Q ss_pred ccchhhhhhhhhhhHhhhhhhhhhhcccccCCcEEEEccCCCCCcCCccccCCCCCchhcccccccCCCCCCcccccccc
Q 011082 207 SKASTNLQHATQAEQEGEKQIQYNIAELTKQGQRVIIAYGGEGGLGNVCCPSVSKKPMVMKSKSYKNGPSDPKLASDDQS 286 (494)
Q Consensus 207 ~~l~iF~~~A~t~e~~ela~l~~~l~~l~~~~~~~~~~~GG~GG~Gn~~~~~~~~~~~~~~~~~~~~ri~~l~~~~~~~~ 286 (494)
.++.++|...++.+++|+||.||+||.+|.+..++ .++.+
T Consensus 139 ---------------------~~~v~el~~~~~~~i~arGG~GG~gn~~fls~~~r----~p~~~--------------- 178 (366)
T KOG1489|consen 139 ---------------------GKLVAELTKEGDRVIAARGGEGGKGNKFFLSNENR----SPKFS--------------- 178 (366)
T ss_pred ---------------------chhHHHhccCCcEEEEeecCCCCccceeecccccc----Ccccc---------------
Confidence 13678899999999999999999999999886552 23332
Q ss_pred cccCCCCCceeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCc-ceEEecCCCccC
Q 011082 287 SLVAGEPGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI-QITVADIPGLIK 365 (494)
Q Consensus 287 ~~~~g~~ge~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~l~DtPGli~ 365 (494)
..|..|+++.+.|||+.+++|+|||+||||||||||+|++++|++++|+|||+.|++|++.+++. ++.++|+||+|+
T Consensus 179 --~~G~~G~e~~~~lELKsiadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~ 256 (366)
T KOG1489|consen 179 --KPGLNGEERVIELELKSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIE 256 (366)
T ss_pred --cCCCCCceEEEEEEeeeecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccc
Confidence 67999999999999999999999999999999999999999999999999999999999999995 499999999999
Q ss_pred CccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH-HHH
Q 011082 366 GAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE-EVY 444 (494)
Q Consensus 366 ~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~-e~~ 444 (494)
+||.+++|++.||+|+++|+.++||+|++.+.. ..|+++++.++.||+.|...|.++|.++|+||+|+++.+ ..+
T Consensus 257 GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~----~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l 332 (366)
T KOG1489|consen 257 GAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQL----RNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLL 332 (366)
T ss_pred cccccCcccHHHHHHHHhhceEEEEEECCCccc----CCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHH
Confidence 999999999999999999999999999998533 589999999999999999999999999999999996554 445
Q ss_pred HHHHHHcCCCCEEEEEcccCCCHHHHHHHHHHH
Q 011082 445 EELERRVQGVPIYPVCAVLEEGVPELKVGLRML 477 (494)
Q Consensus 445 ~~L~~~~~~~~ii~ISA~~g~gI~~L~~~I~~~ 477 (494)
+.|.+.+++..+|++||++++|+++|++.|.+.
T Consensus 333 ~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 333 SSLAKRLQNPHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred HHHHHHcCCCcEEEeeeccccchHHHHHHHhhc
Confidence 888888877679999999999999999998764
No 8
>PF01018 GTP1_OBG: GTP1/OBG; InterPro: IPR006169 Several proteins have recently been shown to contain the 5 structural motifs characteristic of GTP-binding proteins []. These include murine DRG protein; GTP1 protein from Schizosaccharomyces pombe; OBG protein from Bacillus subtilis; and several others. Although the proteins contain GTP-binding motifs and are similar to each other, they do not share sequence similarity to other GTP-binding proteins, and have thus been classed as a novel group, the GTP1/OBG family. As yet, the functions of these proteins is uncertain, but they have been shown to be important in development and normal cell metabolism [, ].; GO: 0005525 GTP binding; PDB: 1LNZ_A 1UDX_A.
Probab=100.00 E-value=2e-43 Score=321.65 Aligned_cols=153 Identities=44% Similarity=0.790 Sum_probs=83.8
Q ss_pred ceeEEEEEEEeCCCCCccccccccccccCCCCCCCCCCCcceEEEEccCCccccccc--cceEEcCCCCCCCCCCCCCCC
Q 011082 49 MRDRFTIYAKGGDGGSGCCSFRRSRHLRRGKPDGGNGGRGGDVILECSPSVWDFRSL--QHHLRAGKGGHGAPKNMIGTC 126 (494)
Q Consensus 49 f~D~~~i~v~~G~GG~G~~sf~r~~~~~~g~p~GG~GG~GG~v~~~~~~~~~~l~~~--~~~~~a~~G~~G~~~~~~G~~ 126 (494)
|||+++|+|+||+|||||+||+||+|+|+|+|||||||+||||||+|++++.+|.++ +++|+|+||++|++++++|++
T Consensus 1 FvD~~~i~v~~G~GG~G~~sf~r~~~~~~ggp~GG~GG~GG~V~l~~~~~~~sL~~~~~~~~~~A~~G~~G~~~~~~G~~ 80 (156)
T PF01018_consen 1 FVDRVRIKVRGGNGGNGCVSFRREKYVPKGGPDGGNGGNGGDVYLVADENVNSLLDLKNKKHYKAENGENGKSRNCHGKN 80 (156)
T ss_dssp EECEEEEEEE----------EEEETTCCEEEE----------EEEEE-TT--SSCCCGTSSEEE-------BTTTB----
T ss_pred CeEEEEEEEEecCCcCCEEeEEeeccccCCCCCCCCCCCCceeEEEecccccchhhcceeeeEEcCCCCCCCCCcccccC
Confidence 999999999999999999999999999999999999999999999999999999987 478999999999999999999
Q ss_pred CCCEEEEcCCccEEEeccCCCCCcccCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCchhhccccCCCCCCcccccc
Q 011082 127 GEDKVVLVPVGTVIHLIEGEIPSMVDNRSESDLDPWERPGSLVDDPSLSNQQTTIQNPSVPEEVKSTCKNDSSSSHTEIT 206 (494)
Q Consensus 127 g~d~~i~vP~Gt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (494)
|+|++|+||+||+|++.+ ++
T Consensus 81 G~dl~i~VP~GT~V~~~~----------------------------------~~-------------------------- 100 (156)
T PF01018_consen 81 GKDLIIKVPVGTVVYDAD----------------------------------TG-------------------------- 100 (156)
T ss_dssp ---EEEEE-TTEEEEETT----------------------------------T---------------------------
T ss_pred CCccEeeecCCcEEEeec----------------------------------cc--------------------------
Confidence 999999999999999621 11
Q ss_pred ccchhhhhhhhhhhHhhhhhhhhhhcccccCCcEEEEccCCCCCcCCccccCCCCCchhcccccccCCCCCCcccccccc
Q 011082 207 SKASTNLQHATQAEQEGEKQIQYNIAELTKQGQRVIIAYGGEGGLGNVCCPSVSKKPMVMKSKSYKNGPSDPKLASDDQS 286 (494)
Q Consensus 207 ~~l~iF~~~A~t~e~~ela~l~~~l~~l~~~~~~~~~~~GG~GG~Gn~~~~~~~~~~~~~~~~~~~~ri~~l~~~~~~~~ 286 (494)
.+++||..+++.+++|+||.||+||.+|+++++ +.+..
T Consensus 101 ----------------------~~l~Dl~~~g~~~lvArGG~GG~GN~~f~s~~~-----~~P~~--------------- 138 (156)
T PF01018_consen 101 ----------------------ELLADLTEPGQRFLVARGGRGGLGNAHFKSSTN-----RAPRF--------------- 138 (156)
T ss_dssp -----------------------EEEEE-STT-EEEEE--------GGGC-BTTC-----SS--E---------------
T ss_pred ----------------------cchheeecccceeEEecCCCCccccccccCCCC-----CCCCc---------------
Confidence 178899999999999999999999999998877 33321
Q ss_pred cccCCCCCceeEEEEEee
Q 011082 287 SLVAGEPGSESELILELK 304 (494)
Q Consensus 287 ~~~~g~~ge~~~i~lelk 304 (494)
.+.|++||++.+.|||+
T Consensus 139 -~~~G~~Ge~~~l~LELK 155 (156)
T PF01018_consen 139 -ATPGEPGEERKLELELK 155 (156)
T ss_dssp -EE------EEEEEEEEE
T ss_pred -cCCCCCceEEEEEEEEe
Confidence 25799999999999997
No 9
>COG2262 HflX GTPases [General function prediction only]
Probab=100.00 E-value=2.5e-39 Score=328.20 Aligned_cols=250 Identities=25% Similarity=0.289 Sum_probs=207.7
Q ss_pred cchhhhhhhhhhhHh---hhhhhhhhhcccccCCcEEEEccCCCCCcCCccccCCCCCchhcccccccCCCCCCcccccc
Q 011082 208 KASTNLQHATQAEQE---GEKQIQYNIAELTKQGQRVIIAYGGEGGLGNVCCPSVSKKPMVMKSKSYKNGPSDPKLASDD 284 (494)
Q Consensus 208 ~l~iF~~~A~t~e~~---ela~l~~~l~~l~~~~~~~~~~~GG~GG~Gn~~~~~~~~~~~~~~~~~~~~ri~~l~~~~~~ 284 (494)
.|+||++||+|+|++ |||||+|.+|+|.+.+..+....||.|-+|+.+.+.++. .+.++.||.+|++++++
T Consensus 102 ILdIFa~RA~S~EgkLQVeLAqL~Y~lpRl~~~~~~l~~~GggiG~rGpGE~~lE~d------rR~ir~rI~~i~~eLe~ 175 (411)
T COG2262 102 ILDIFAQRARSREGKLQVELAQLRYELPRLVGSGSHLSRLGGGIGFRGPGETQLETD------RRRIRRRIAKLKRELEN 175 (411)
T ss_pred HHHHHHHHhccchhhhhhhHHhhhhhhhHhHhhhhhcccccCCCCCCCCCchHHHHH------HHHHHHHHHHHHHHHHH
Confidence 399999999999999 999999999999999999997777788888887776654 56778899999999999
Q ss_pred cccccCCCCCceeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC-cceEEecCCCc
Q 011082 285 QSSLVAGEPGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD-IQITVADIPGL 363 (494)
Q Consensus 285 ~~~~~~g~~ge~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~l~DtPGl 363 (494)
+++.|...+..+ +-...+.|+||||+|||||||+|+||+....+.+..|+|++|+...+.+++ ..+++.||+||
T Consensus 176 v~~~R~~~R~~R-----~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGF 250 (411)
T COG2262 176 VEKAREPRRKKR-----SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGF 250 (411)
T ss_pred HHHHHHHHhhhh-----cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccC
Confidence 988877666555 246889999999999999999999999999999999999999999999985 89999999999
Q ss_pred cCCccccccchhhH---HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh
Q 011082 364 IKGAHENRGLGHAF---LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA 440 (494)
Q Consensus 364 i~~a~~~~~L~~~f---l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~ 440 (494)
|+..+ ..|..+| |+.+..+|++|||+|+|++ ....+++....-|... .....|+|+|+||+|+...
T Consensus 251 I~~LP--~~LV~AFksTLEE~~~aDlllhVVDaSdp-------~~~~~~~~v~~vL~el--~~~~~p~i~v~NKiD~~~~ 319 (411)
T COG2262 251 IRDLP--HPLVEAFKSTLEEVKEADLLLHVVDASDP-------EILEKLEAVEDVLAEI--GADEIPIILVLNKIDLLED 319 (411)
T ss_pred cccCC--hHHHHHHHHHHHHhhcCCEEEEEeecCCh-------hHHHHHHHHHHHHHHc--CCCCCCEEEEEecccccCc
Confidence 99443 3566677 4555678999999999984 4555555555555443 3457999999999998876
Q ss_pred HHHHHHHHHHcCCCCEEEEEcccCCCHHHHHHHHHHHhccc
Q 011082 441 EEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 441 ~e~~~~L~~~~~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~ 481 (494)
......+....+ ..|+|||+++.|++.|.+.|.+.+...
T Consensus 320 ~~~~~~~~~~~~--~~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 320 EEILAELERGSP--NPVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred hhhhhhhhhcCC--CeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 655555555432 689999999999999999999988744
No 10
>PRK11058 GTPase HflX; Provisional
Probab=100.00 E-value=9.5e-34 Score=298.55 Aligned_cols=249 Identities=24% Similarity=0.246 Sum_probs=186.0
Q ss_pred cchhhhhhhhhhhHh---hhhhhhhhhcccccCCcEEEEccCCCCCcCCccccCCCCCchhcccccccCCCCCCcccccc
Q 011082 208 KASTNLQHATQAEQE---GEKQIQYNIAELTKQGQRVIIAYGGEGGLGNVCCPSVSKKPMVMKSKSYKNGPSDPKLASDD 284 (494)
Q Consensus 208 ~l~iF~~~A~t~e~~---ela~l~~~l~~l~~~~~~~~~~~GG~GG~Gn~~~~~~~~~~~~~~~~~~~~ri~~l~~~~~~ 284 (494)
.|+||++||+|+||| |||+|+|.+|+|.+.+.++.+++||.|.+|+.+...+.. .+.++.|+..+++++++
T Consensus 107 il~IF~~rA~t~e~klqvelA~l~y~~prl~~~~~~l~~~~gg~g~~g~ge~~~e~d------~r~i~~ri~~l~~~L~~ 180 (426)
T PRK11058 107 ILDIFAQRARTHEGKLQVELAQLRHLATRLVRGWTHLERQKGGIGLRGPGETQLETD------RRLLRNRIVQILSRLER 180 (426)
T ss_pred HHHHHHHhcCChHHHHHHHHHhhhhhhhhhhccccchhhhcCCCCCCCCChhHhHHH------HHHHHHHHHHHHHHHHH
Confidence 499999999999999 999999999999999999999999999888877665544 45567788888888877
Q ss_pred cccccCCCCCceeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCc-ceEEecCCCc
Q 011082 285 QSSLVAGEPGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI-QITVADIPGL 363 (494)
Q Consensus 285 ~~~~~~g~~ge~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~l~DtPGl 363 (494)
+.+.+...+..+ .....+.|+|||+||||||||+|+|++.+..+.+++|+|++++.+.+.+++. .+.++||||+
T Consensus 181 ~~~~r~~~r~~r-----~~~~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~ 255 (426)
T PRK11058 181 VEKQREQGRRAR-----IKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGF 255 (426)
T ss_pred HHHhHHHHHHHh-----hhcCCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcc
Confidence 765433211111 1234578999999999999999999998888889999999999999988774 8899999999
Q ss_pred cCCccccccchhhH---HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh
Q 011082 364 IKGAHENRGLGHAF---LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA 440 (494)
Q Consensus 364 i~~a~~~~~L~~~f---l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~ 440 (494)
++..+. .+...| +.++..+|++|+|+|++++ ........+...+..+. ..+.|+|+|+||+|+...
T Consensus 256 ~r~lp~--~lve~f~~tl~~~~~ADlIL~VvDaS~~-------~~~e~l~~v~~iL~el~--~~~~pvIiV~NKiDL~~~ 324 (426)
T PRK11058 256 IRHLPH--DLVAAFKATLQETRQATLLLHVVDAADV-------RVQENIEAVNTVLEEID--AHEIPTLLVMNKIDMLDD 324 (426)
T ss_pred cccCCH--HHHHHHHHHHHHhhcCCEEEEEEeCCCc-------cHHHHHHHHHHHHHHhc--cCCCCEEEEEEcccCCCc
Confidence 763221 222333 4567889999999999873 33444433333333221 136899999999999753
Q ss_pred HHHHHHHHHHcCCCC-EEEEEcccCCCHHHHHHHHHHHhcc
Q 011082 441 EEVYEELERRVQGVP-IYPVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 441 ~e~~~~L~~~~~~~~-ii~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
.... +.....+.+ +++|||++|+|+++|+++|.+.+..
T Consensus 325 ~~~~--~~~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 325 FEPR--IDRDEENKPIRVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred hhHH--HHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 2211 111111233 5889999999999999999988753
No 11
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.98 E-value=5.9e-33 Score=286.22 Aligned_cols=245 Identities=24% Similarity=0.243 Sum_probs=184.0
Q ss_pred cchhhhhhhhhhhHh---hhhhhhhhhcccccCCcEEEEccCCCCCcCCccccCCCCCchhcccccccCCCCCCcccccc
Q 011082 208 KASTNLQHATQAEQE---GEKQIQYNIAELTKQGQRVIIAYGGEGGLGNVCCPSVSKKPMVMKSKSYKNGPSDPKLASDD 284 (494)
Q Consensus 208 ~l~iF~~~A~t~e~~---ela~l~~~l~~l~~~~~~~~~~~GG~GG~Gn~~~~~~~~~~~~~~~~~~~~ri~~l~~~~~~ 284 (494)
.|+||++||+|+||| |||+|+|.++++...+..+....||.|..|+.+...... .+.++.|+..+++++++
T Consensus 99 il~iF~~ra~t~e~klqv~la~l~~~l~r~~~~~~~l~~~~~~i~~~g~gE~~~~~~------~~~i~~ri~~l~~~L~~ 172 (351)
T TIGR03156 99 ILDIFAQRARTHEGKLQVELAQLKYLLPRLVGGWTHLSRQGGGIGTRGPGETQLETD------RRLIRERIAQLKKELEK 172 (351)
T ss_pred HHHHHHHhccChHHHHHHHHHhccchhhhhhhhHHHHHhhcCCCCCCCCChhHHHHH------HHHHHHHHHHHHHHHHH
Confidence 499999999999999 999999999999998877888888888776554322222 34567788899999888
Q ss_pred cccccCCCCCceeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeec-CcceEEecCCCc
Q 011082 285 QSSLVAGEPGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD-DIQITVADIPGL 363 (494)
Q Consensus 285 ~~~~~~g~~ge~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~-~~~~~l~DtPGl 363 (494)
+.+.+...+..+ +....++|+|||+||||||||+|+|++....+.+++|+|++++.+.+.++ +..+.++||||+
T Consensus 173 ~~~~~~~~r~~r-----~~~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~ 247 (351)
T TIGR03156 173 VEKQRERQRRRR-----KRADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGF 247 (351)
T ss_pred HHHHHHHHHhhh-----cccCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcc
Confidence 876554333222 12356899999999999999999999988777899999999999999984 589999999999
Q ss_pred cCCccccccchhhH---HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh
Q 011082 364 IKGAHENRGLGHAF---LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA 440 (494)
Q Consensus 364 i~~a~~~~~L~~~f---l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~ 440 (494)
++..+. .+...| +.++..||++++|+|++++ ........+...+..+ ...++|+|+|+||+|+...
T Consensus 248 ~~~l~~--~lie~f~~tle~~~~ADlil~VvD~s~~-------~~~~~~~~~~~~L~~l--~~~~~piIlV~NK~Dl~~~ 316 (351)
T TIGR03156 248 IRDLPH--ELVAAFRATLEEVREADLLLHVVDASDP-------DREEQIEAVEKVLEEL--GAEDIPQLLVYNKIDLLDE 316 (351)
T ss_pred cccCCH--HHHHHHHHHHHHHHhCCEEEEEEECCCC-------chHHHHHHHHHHHHHh--ccCCCCEEEEEEeecCCCh
Confidence 764221 122233 5567889999999999873 3344444343334332 2247899999999999764
Q ss_pred HHHHHHHHHHcCCCCEEEEEcccCCCHHHHHHHHHHH
Q 011082 441 EEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRML 477 (494)
Q Consensus 441 ~e~~~~L~~~~~~~~ii~ISA~~g~gI~~L~~~I~~~ 477 (494)
.+. ..+.. ...++++|||+++.|+++|++.|.+.
T Consensus 317 ~~v-~~~~~--~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 317 PRI-ERLEE--GYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred HhH-HHHHh--CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 432 22211 12468999999999999999999765
No 12
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.95 E-value=1.7e-29 Score=247.94 Aligned_cols=244 Identities=22% Similarity=0.206 Sum_probs=191.9
Q ss_pred cchhhhhhhhhhhHh---hhhhhhhhhcccccCCcEEEEccCCC-CCcCCccccCCCCCchhcccccccCCCCCCccccc
Q 011082 208 KASTNLQHATQAEQE---GEKQIQYNIAELTKQGQRVIIAYGGE-GGLGNVCCPSVSKKPMVMKSKSYKNGPSDPKLASD 283 (494)
Q Consensus 208 ~l~iF~~~A~t~e~~---ela~l~~~l~~l~~~~~~~~~~~GG~-GG~Gn~~~~~~~~~~~~~~~~~~~~ri~~l~~~~~ 283 (494)
.|+||.++|.|+||+ .+|+++|..++|...++++.+++||. .|.|...... + +.++++.++++++++|+
T Consensus 89 vl~if~q~a~T~earlqvalAempy~~~rl~r~~~hl~r~~g~~v~gsges~id~--d-----~~rllr~kea~lrKeL~ 161 (410)
T KOG0410|consen 89 VLQIFEQEAVTAEARLQVALAEMPYVGGRLERELQHLRRQSGGQVKGSGESIIDR--D-----IRRLLRIKEAQLRKELQ 161 (410)
T ss_pred HHHHHHHHhhhHHHHHhhhhhcCccccchHHHHHHHHHhcCCCcccCccchHhHH--H-----HHHHHHHHHHHHHHHHH
Confidence 599999999999999 99999999999999999999999986 4555544332 2 45778889999999999
Q ss_pred ccccccCCCCCceeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC-cceEEecCCC
Q 011082 284 DQSSLVAGEPGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD-IQITVADIPG 362 (494)
Q Consensus 284 ~~~~~~~g~~ge~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~l~DtPG 362 (494)
..++++.++.|.+ -...+.|++|||+|||||||+++||++.....+..|+|+||+.....+++ ..+++.||.|
T Consensus 162 ~vrrkr~~r~gr~------~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvG 235 (410)
T KOG0410|consen 162 RVRRKRQRRVGRE------GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVG 235 (410)
T ss_pred HHHHHHhhhhccc------cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechh
Confidence 9888775545444 35788999999999999999999998888889999999999998888876 7789999999
Q ss_pred ccCCccccccchhhH---HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhc--ccCCCCEEEEEeCCCc
Q 011082 363 LIKGAHENRGLGHAF---LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQE--GLSDRPSLVVANKIDE 437 (494)
Q Consensus 363 li~~a~~~~~L~~~f---l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~--~l~~~P~IlVlNKiDl 437 (494)
|+...+ .+|..+| |.++..+|+||||+|++++ +...+...++.-|..+.- ......+|-|-||+|.
T Consensus 236 FisdLP--~~LvaAF~ATLeeVaeadlllHvvDiShP-------~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~ 306 (410)
T KOG0410|consen 236 FISDLP--IQLVAAFQATLEEVAEADLLLHVVDISHP-------NAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDY 306 (410)
T ss_pred hhhhCc--HHHHHHHHHHHHHHhhcceEEEEeecCCc-------cHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccc
Confidence 998443 3566666 6778889999999999994 555666666666655421 1112345667799998
Q ss_pred CChHHHHHHHHHHcCCCCEEEEEcccCCCHHHHHHHHHHHhcc
Q 011082 438 DGAEEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 438 ~~~~e~~~~L~~~~~~~~ii~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
....... .....+.|||++|.|++++++.+...+..
T Consensus 307 e~~~~e~-------E~n~~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 307 EEDEVEE-------EKNLDVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred ccccCcc-------ccCCccccccccCccHHHHHHHHHHHhhh
Confidence 7543211 11236899999999999999999877654
No 13
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.93 E-value=1.7e-25 Score=220.52 Aligned_cols=202 Identities=32% Similarity=0.467 Sum_probs=156.2
Q ss_pred ccCCCCCCcccccccccccCCCCCceeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEee
Q 011082 271 YKNGPSDPKLASDDQSSLVAGEPGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNF 350 (494)
Q Consensus 271 ~~~ri~~l~~~~~~~~~~~~g~~ge~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~ 350 (494)
++.|+++|++++++.++ ..|.-| ..+.......++|+|||+|++||||||++||+.++.+++|+|||+.|..|.+.|
T Consensus 31 lKaklA~Lr~El~~~~~-~~gggg--~gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y 107 (365)
T COG1163 31 LKAKLAELREELEKRKS-KSGGGG--SGFAVKKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEY 107 (365)
T ss_pred HHHHHHHHHHHHhhhhh-cCCCCC--CcceEeccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEee
Confidence 45567778888876522 222222 345567778999999999999999999999999999999999999999999999
Q ss_pred cCcceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCC-----------------CC------------
Q 011082 351 DDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDG-----------------RK------------ 401 (494)
Q Consensus 351 ~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~-----------------~~------------ 401 (494)
++..++++|+||++++++.+++.+.+++..++.||++++|+|+..+... ..
T Consensus 108 ~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gG 187 (365)
T COG1163 108 KGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGG 187 (365)
T ss_pred cCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCC
Confidence 9999999999999999999999999999999999999999999853210 00
Q ss_pred ----C--C---CCHHHHHHHHHHHHhhh-------------------cccCCCCEEEEEeCCCcCChHHHHHHHHHHcCC
Q 011082 402 ----G--I---KPWKQLRDLIIELEHHQ-------------------EGLSDRPSLVVANKIDEDGAEEVYEELERRVQG 453 (494)
Q Consensus 402 ----~--~---~~~~~~~~l~~eL~~~~-------------------~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~~~ 453 (494)
+ . ...+..+.++.+..-++ ....-+|.|+|+||+|+...++ +..+.+..
T Consensus 188 I~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~-~~~l~~~~-- 264 (365)
T COG1163 188 IRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEE-LERLARKP-- 264 (365)
T ss_pred EEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHH-HHHHHhcc--
Confidence 0 0 11223333333322111 1234589999999999998443 55555543
Q ss_pred CCEEEEEcccCCCHHHHHHHHHHHhc
Q 011082 454 VPIYPVCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 454 ~~ii~ISA~~g~gI~~L~~~I~~~l~ 479 (494)
++++|||..+.|+++|.+.|++.+.
T Consensus 265 -~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 265 -NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred -ceEEEecccCCCHHHHHHHHHHhhC
Confidence 7899999999999999999999875
No 14
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.92 E-value=7.2e-24 Score=194.89 Aligned_cols=165 Identities=52% Similarity=0.793 Sum_probs=134.5
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCc-ceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI-QITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
++|+|||.+|||||||+++|++..+.++.++++|..++.+.+.+++. .+.++||||+.+.......+...|++++..+|
T Consensus 1 ~~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 1 ADVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CCeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 47999999999999999999998877888999999999999988886 99999999997655444456778888889999
Q ss_pred eeeEEEecCCCCCCCCCC-CCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHHc---CCCCEEEEEc
Q 011082 386 VLAYVVDLASGLDGRKGI-KPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRV---QGVPIYPVCA 461 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~-~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~---~~~~ii~ISA 461 (494)
++++|+|+++ . .+...+..+..++..+.+.+..+|.++|+||+|+.......+.+.... ...+++++||
T Consensus 81 ~vi~v~D~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (170)
T cd01898 81 LLLHVIDLSG-------DDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISA 153 (170)
T ss_pred EEEEEEecCC-------CCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEec
Confidence 9999999987 3 467777778777776654456799999999999976544333333322 2467999999
Q ss_pred ccCCCHHHHHHHHHHHh
Q 011082 462 VLEEGVPELKVGLRMLV 478 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l 478 (494)
+++.|+++++++|.+++
T Consensus 154 ~~~~gi~~l~~~i~~~~ 170 (170)
T cd01898 154 LTGEGLDELLRKLAELL 170 (170)
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 99999999999998753
No 15
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.89 E-value=5e-22 Score=202.08 Aligned_cols=176 Identities=31% Similarity=0.496 Sum_probs=138.4
Q ss_pred eeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeec---------------------C---cceEEecCCCcc
Q 011082 309 VGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD---------------------D---IQITVADIPGLI 364 (494)
Q Consensus 309 V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~---------------------~---~~~~l~DtPGli 364 (494)
|+|||.||+|||||+|+||+....+++|||||.+|+.|.+.+. + ..+.++||||++
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 6899999999999999999999899999999999999987651 1 468999999999
Q ss_pred CCccccccchhhHHHHHHhhceeeEEEecCCCCCC------CCCCCCHHHHHHHHHHHHhh-------------------
Q 011082 365 KGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDG------RKGIKPWKQLRDLIIELEHH------------------- 419 (494)
Q Consensus 365 ~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~------~~~~~~~~~~~~l~~eL~~~------------------- 419 (494)
++++++.+++..|+.+++.||+++||+|++...+. ....+|..++..+..||..+
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999752111 01124555554444333321
Q ss_pred -----------------------------h-c------------------ccCCCCEEEEEeCCCcCChHHHHHHHHHHc
Q 011082 420 -----------------------------Q-E------------------GLSDRPSLVVANKIDEDGAEEVYEELERRV 451 (494)
Q Consensus 420 -----------------------------~-~------------------~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~ 451 (494)
. + -+..+|+|+|+||+|+...++..+.+....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~~~l~~~~ 240 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNISKLRLKY 240 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHHHHHHhhC
Confidence 0 0 134689999999999876666555555554
Q ss_pred CCCCEEEEEcccCCCHHHHHH-HHHHHhcccCCc
Q 011082 452 QGVPIYPVCAVLEEGVPELKV-GLRMLVNGEKSE 484 (494)
Q Consensus 452 ~~~~ii~ISA~~g~gI~~L~~-~I~~~l~~~~~~ 484 (494)
....++++||+.+.++++|.+ .+.+++++...-
T Consensus 241 ~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f 274 (318)
T cd01899 241 PDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDF 274 (318)
T ss_pred CCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCc
Confidence 556899999999999999998 699999876543
No 16
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.88 E-value=6.7e-23 Score=187.35 Aligned_cols=150 Identities=33% Similarity=0.516 Sum_probs=113.0
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCcccc--ccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN--RGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~--~~L~~~fl~~i~~ad 385 (494)
+|+|+|.||+|||||+|+|++.+..+++||++|.+...|.+.+.+..+.++|+||++.-.+.. ......++. .+..|
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~-~~~~D 80 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLL-SEKPD 80 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHH-HTSSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHh-hcCCC
Confidence 589999999999999999999999999999999999999999999999999999987633211 111122221 25789
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH---HHHHHHHHHcCCCCEEEEEcc
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYPVCAV 462 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~---e~~~~L~~~~~~~~ii~ISA~ 462 (494)
++++|+|++. .+.-..+..++..+ ..|+|+|+||+|..... ...+.|.+.+ +.+++++||+
T Consensus 81 ~ii~VvDa~~----------l~r~l~l~~ql~e~-----g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L-g~pvi~~sa~ 144 (156)
T PF02421_consen 81 LIIVVVDATN----------LERNLYLTLQLLEL-----GIPVVVVLNKMDEAERKGIEIDAEKLSERL-GVPVIPVSAR 144 (156)
T ss_dssp EEEEEEEGGG----------HHHHHHHHHHHHHT-----TSSEEEEEETHHHHHHTTEEE-HHHHHHHH-TS-EEEEBTT
T ss_pred EEEEECCCCC----------HHHHHHHHHHHHHc-----CCCEEEEEeCHHHHHHcCCEECHHHHHHHh-CCCEEEEEeC
Confidence 9999999876 23333455555443 69999999999986542 1245666666 6899999999
Q ss_pred cCCCHHHHHHHH
Q 011082 463 LEEGVPELKVGL 474 (494)
Q Consensus 463 ~g~gI~~L~~~I 474 (494)
+++|+++|++.|
T Consensus 145 ~~~g~~~L~~~I 156 (156)
T PF02421_consen 145 TGEGIDELKDAI 156 (156)
T ss_dssp TTBTHHHHHHHH
T ss_pred CCcCHHHHHhhC
Confidence 999999999876
No 17
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.88 E-value=6.1e-22 Score=182.64 Aligned_cols=166 Identities=46% Similarity=0.668 Sum_probs=127.5
Q ss_pred eeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeec-CcceEEecCCCccCCccccccchhhHHHHHHhhceeeE
Q 011082 311 LVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD-DIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAY 389 (494)
Q Consensus 311 LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~-~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~ 389 (494)
|+|++|||||||+|+|++....+++++++|..++.+.+.++ +..+.++||||+.+.......+...|+..+..+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 58999999999999999987777899999999999998888 89999999999977555555666678888999999999
Q ss_pred EEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcc-----cCCCCEEEEEeCCCcCChHHHHHH---HHHHcCCCCEEEEEc
Q 011082 390 VVDLASGLDGRKGIKPWKQLRDLIIELEHHQEG-----LSDRPSLVVANKIDEDGAEEVYEE---LERRVQGVPIYPVCA 461 (494)
Q Consensus 390 VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~-----l~~~P~IlVlNKiDl~~~~e~~~~---L~~~~~~~~ii~ISA 461 (494)
|+|+++.... ....+......+..++..+... +..+|+++|+||+|+......... ........+++++||
T Consensus 81 v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 81 VVDASEDDDI-GGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEeccCCccc-cccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 9999873100 0003455666666666544322 347999999999999876543332 122224568999999
Q ss_pred ccCCCHHHHHHHHHHH
Q 011082 462 VLEEGVPELKVGLRML 477 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~ 477 (494)
+++.|++++++.|..+
T Consensus 160 ~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 160 KTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhcCHHHHHHHHHhh
Confidence 9999999999998765
No 18
>COG1159 Era GTPase [General function prediction only]
Probab=99.87 E-value=1.1e-21 Score=192.84 Aligned_cols=163 Identities=26% Similarity=0.315 Sum_probs=129.3
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCC-cccccceeecceeeEEeecCcceEEecCCCccCCcc-ccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAH-ENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~-i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~-~~~~L~~~fl~~i~~ad 385 (494)
.|+|||.||||||||+|+|.|.+.. +++.+-||.....|.+..++.+++++||||+.+..+ .+.-+.......+..+|
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvD 87 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVD 87 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCc
Confidence 6899999999999999999999875 588999999999999999999999999999988644 23344455567788899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHH-H---HHHHHHcCCCCEEEEEc
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV-Y---EELERRVQGVPIYPVCA 461 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~-~---~~L~~~~~~~~ii~ISA 461 (494)
+++||+|+.+... ...+.+++.|.. .+.|.|+++||+|....+.. . +.+....+...+++|||
T Consensus 88 lilfvvd~~~~~~--------~~d~~il~~lk~-----~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA 154 (298)
T COG1159 88 LILFVVDADEGWG--------PGDEFILEQLKK-----TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISA 154 (298)
T ss_pred EEEEEEeccccCC--------ccHHHHHHHHhh-----cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeec
Confidence 9999999987322 122333344432 36799999999998876652 2 23333336668999999
Q ss_pred ccCCCHHHHHHHHHHHhcccCC
Q 011082 462 VLEEGVPELKVGLRMLVNGEKS 483 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l~~~~~ 483 (494)
+++.|++.|.+.+...|++.+.
T Consensus 155 ~~g~n~~~L~~~i~~~Lpeg~~ 176 (298)
T COG1159 155 LKGDNVDTLLEIIKEYLPEGPW 176 (298)
T ss_pred cccCCHHHHHHHHHHhCCCCCC
Confidence 9999999999999999988764
No 19
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.86 E-value=1.2e-20 Score=188.37 Aligned_cols=162 Identities=22% Similarity=0.237 Sum_probs=121.8
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCCccc-cccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE-NRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~-~~~L~~~fl~~i~~ad 385 (494)
.|+|+|.||||||||+|+|++.+. .+++++.||.+...+....++.++.++||||+.+..+. ...+.......+..+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 589999999999999999999875 46889999998888877777788999999999764221 1122334456788999
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHH---cCCCCEEEEEcc
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERR---VQGVPIYPVCAV 462 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~---~~~~~ii~ISA~ 462 (494)
++++|+|++.. .... ..+...+.. .+.|.++|+||+|+.......+.+... ....+++++||+
T Consensus 82 vvl~VvD~~~~-------~~~~--~~i~~~l~~-----~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~ 147 (270)
T TIGR00436 82 LILFVVDSDQW-------NGDG--EFVLTKLQN-----LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISAL 147 (270)
T ss_pred EEEEEEECCCC-------CchH--HHHHHHHHh-----cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecC
Confidence 99999999863 1221 333344432 268999999999998655444333332 233479999999
Q ss_pred cCCCHHHHHHHHHHHhcccCC
Q 011082 463 LEEGVPELKVGLRMLVNGEKS 483 (494)
Q Consensus 463 ~g~gI~~L~~~I~~~l~~~~~ 483 (494)
+|.|+++|++.|.+.+.+.++
T Consensus 148 ~g~gi~~L~~~l~~~l~~~~~ 168 (270)
T TIGR00436 148 TGDNTSFLAAFIEVHLPEGPF 168 (270)
T ss_pred CCCCHHHHHHHHHHhCCCCCC
Confidence 999999999999999877654
No 20
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.86 E-value=2e-21 Score=185.16 Aligned_cols=192 Identities=26% Similarity=0.307 Sum_probs=135.1
Q ss_pred ccccCCCCCCcccccccccccCCCCCceeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEE
Q 011082 269 KSYKNGPSDPKLASDDQSSLVAGEPGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNM 348 (494)
Q Consensus 269 ~~~~~ri~~l~~~~~~~~~~~~g~~ge~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v 348 (494)
+.+++|++.++++++...+.+...+-.+ +.+..++|+|+|++|||||||+++|++....+.+++++|+++..+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~ 83 (204)
T cd01878 9 RLIRERIAKLRRELEKVKKQRELQRRRR-----KRSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRL 83 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhh-----hhcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEE
Confidence 4456677777777766654433222111 23556899999999999999999999987777788899999998888
Q ss_pred eecCc-ceEEecCCCccCCccccccchhhH---HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccC
Q 011082 349 NFDDI-QITVADIPGLIKGAHENRGLGHAF---LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLS 424 (494)
Q Consensus 349 ~~~~~-~~~l~DtPGli~~a~~~~~L~~~f---l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~ 424 (494)
.+++. .+.++||||+.+..+. .+...+ +.++..+|++++|+|+++. ........+...+..+ ...
T Consensus 84 ~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~~~~~~~d~ii~v~D~~~~-------~~~~~~~~~~~~l~~~--~~~ 152 (204)
T cd01878 84 RLPDGREVLLTDTVGFIRDLPH--QLVEAFRSTLEEVAEADLLLHVVDASDP-------DYEEQIETVEKVLKEL--GAE 152 (204)
T ss_pred EecCCceEEEeCCCccccCCCH--HHHHHHHHHHHHHhcCCeEEEEEECCCC-------ChhhHHHHHHHHHHHc--CcC
Confidence 88774 8999999999653221 111122 3446789999999999873 3333344443434332 223
Q ss_pred CCCEEEEEeCCCcCChHHHHHHHHHHcCCCCEEEEEcccCCCHHHHHHHHHHHh
Q 011082 425 DRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 425 ~~P~IlVlNKiDl~~~~e~~~~L~~~~~~~~ii~ISA~~g~gI~~L~~~I~~~l 478 (494)
+.|+++|+||+|+.........+. ....+++++||+++.|+++++++|...|
T Consensus 153 ~~~viiV~NK~Dl~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 153 DIPMILVLNKIDLLDDEELEERLE--AGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred CCCEEEEEEccccCChHHHHHHhh--cCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 689999999999987654331111 1356799999999999999999987653
No 21
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.86 E-value=8.2e-21 Score=198.61 Aligned_cols=174 Identities=33% Similarity=0.497 Sum_probs=131.6
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeec------------------------CcceEEecCCCc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD------------------------DIQITVADIPGL 363 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~------------------------~~~~~l~DtPGl 363 (494)
+|+|||.||||||||+|+||+....+++|+|+|++|+.|.+.+. ...+.++||||+
T Consensus 3 kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aGl 82 (396)
T PRK09602 3 TIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAGL 82 (396)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCCc
Confidence 69999999999999999999999889999999999999987631 145789999999
Q ss_pred cCCccccccchhhHHHHHHhhceeeEEEecCCCCC------CCCCCCCHHHHHHHHHHHHh-------------------
Q 011082 364 IKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLD------GRKGIKPWKQLRDLIIELEH------------------- 418 (494)
Q Consensus 364 i~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~------~~~~~~~~~~~~~l~~eL~~------------------- 418 (494)
+++++.+.+++..|+.+++.||+++||+|+....+ .....+|..+++.+..||..
T Consensus 83 ~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~~~ 162 (396)
T PRK09602 83 VPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKAQA 162 (396)
T ss_pred CCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999973210 00012333332222222111
Q ss_pred -----------------------------hh-------------------cccCCCCEEEEEeCCCcCChHHHHHHHHHH
Q 011082 419 -----------------------------HQ-------------------EGLSDRPSLVVANKIDEDGAEEVYEELERR 450 (494)
Q Consensus 419 -----------------------------~~-------------------~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~ 450 (494)
+. .-+..+|+|+|+||+|+...++....+.+.
T Consensus 163 ~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~l~~i~~~ 242 (396)
T PRK09602 163 EKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEENIERLKEE 242 (396)
T ss_pred CCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHHHHHHHhc
Confidence 10 012469999999999987544434445544
Q ss_pred cCCCCEEEEEcccCCCHHH-HHHHHHHHhcccC
Q 011082 451 VQGVPIYPVCAVLEEGVPE-LKVGLRMLVNGEK 482 (494)
Q Consensus 451 ~~~~~ii~ISA~~g~gI~~-L~~~I~~~l~~~~ 482 (494)
+...+++|||+.+.++++ |.+.+.+++...+
T Consensus 243 -~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p 274 (396)
T PRK09602 243 -KYYIVVPTSAEAELALRRAAKAGLIDYIPGDS 274 (396)
T ss_pred -CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCC
Confidence 556799999999999999 8889988887654
No 22
>PTZ00258 GTP-binding protein; Provisional
Probab=99.85 E-value=9.9e-21 Score=196.32 Aligned_cols=161 Identities=32% Similarity=0.501 Sum_probs=123.3
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCc-----------------ceEEecCCCccCCc
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI-----------------QITVADIPGLIKGA 367 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~-----------------~~~l~DtPGli~~a 367 (494)
....|+|||.||||||||+|+|++.++.+++|||||++|+.|.+.+++. ++.++||||++.++
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 3457999999999999999999999999999999999999999988742 48999999999999
Q ss_pred cccccchhhHHHHHHhhceeeEEEecCCCCCC---CCCCCCHHHHHHHHHHHHhhh------------------------
Q 011082 368 HENRGLGHAFLRHIERTKVLAYVVDLASGLDG---RKGIKPWKQLRDLIIELEHHQ------------------------ 420 (494)
Q Consensus 368 ~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~---~~~~~~~~~~~~l~~eL~~~~------------------------ 420 (494)
+.+.+++..|+.+++.+|+++||+|+....+- ....+|..+++.+..||..+.
T Consensus 100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f~d~~v~h~~~~~dp~~d~~~i~~EL~~~d~~~~ek~~~~~~k~~~~~~~~~~~ 179 (390)
T PTZ00258 100 SEGEGLGNAFLSHIRAVDGIYHVVRAFEDEDITHVEGEIDPVRDLEIISSELILKDLEFVEKRLDELTKKRKKKKKKKEE 179 (390)
T ss_pred cchhHHHHHHHHHHHHCCEEEEEEeCCCCCCccccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccccchhhH
Confidence 99889999999999999999999998643210 012345555444433332110
Q ss_pred ------------------------------------cccCCCCEEEEEeCC--Cc-CChHHHHHHHHHHcC---CCCEEE
Q 011082 421 ------------------------------------EGLSDRPSLVVANKI--DE-DGAEEVYEELERRVQ---GVPIYP 458 (494)
Q Consensus 421 ------------------------------------~~l~~~P~IlVlNKi--Dl-~~~~e~~~~L~~~~~---~~~ii~ 458 (494)
.-+..+|+|+|+|+. |+ ...++..+.+.+... +.++++
T Consensus 180 ~~~~~~l~~v~~~L~~~~~~~~~~~~~~e~~~l~~l~llt~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v~ 259 (390)
T PTZ00258 180 KVELDVLKKVLEWLEEGKPVRDGDWTDKEIEILNEYQLLTAKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPIIP 259 (390)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhchhhcCCEEEEEECchhhhcccchHHHHHHHHHHHhcCCCeEEE
Confidence 015579999999999 87 344556666666542 467999
Q ss_pred EEcccCC
Q 011082 459 VCAVLEE 465 (494)
Q Consensus 459 ISA~~g~ 465 (494)
+||+...
T Consensus 260 ~sa~~E~ 266 (390)
T PTZ00258 260 YSAEFEE 266 (390)
T ss_pred eeHHHHH
Confidence 9986543
No 23
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.85 E-value=2.4e-20 Score=182.39 Aligned_cols=169 Identities=30% Similarity=0.386 Sum_probs=127.8
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhce
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 386 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ 386 (494)
++|+|+|+||||||||+++|++..+.+++|+|+|+++..|.+.+++..+.++||||+++.+....++...++..++.+|+
T Consensus 1 ~~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~ 80 (233)
T cd01896 1 ARVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADL 80 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCE
Confidence 47899999999999999999999888999999999999999999999999999999988776555666778889999999
Q ss_pred eeEEEecCCCCCC-----------------C------------------CC---CCCHHHHHHHHHHHHhhh--------
Q 011082 387 LAYVVDLASGLDG-----------------R------------------KG---IKPWKQLRDLIIELEHHQ-------- 420 (494)
Q Consensus 387 ll~VvD~s~~~~~-----------------~------------------~~---~~~~~~~~~l~~eL~~~~-------- 420 (494)
+++|+|+++.... . .. ....+..+.++.+..-+.
T Consensus 81 il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~ 160 (233)
T cd01896 81 ILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRED 160 (233)
T ss_pred EEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccC
Confidence 9999998763210 0 00 011233333333321111
Q ss_pred -----------cccCCCCEEEEEeCCCcCChHHHHHHHHHHcCCCCEEEEEcccCCCHHHHHHHHHHHhc
Q 011082 421 -----------EGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 421 -----------~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~~~~~ii~ISA~~g~gI~~L~~~I~~~l~ 479 (494)
......|.++|+||+|+...++.. .+. ....++++||+++.|+++|++.|.+.+.
T Consensus 161 ~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~-~~~---~~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 161 ITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELD-LLA---RQPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred CCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHH-HHh---cCCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 112346999999999998765543 232 2346899999999999999999998764
No 24
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.1e-20 Score=191.45 Aligned_cols=163 Identities=32% Similarity=0.525 Sum_probs=123.0
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC------------------cceEEecCCCccCCcc
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD------------------IQITVADIPGLIKGAH 368 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~------------------~~~~l~DtPGli~~a~ 368 (494)
..+||||.||+|||||+|+||.....+++|||||++|+.|.+.+.+ ..+.++|++|++.+||
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs 82 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS 82 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence 3689999999999999999999998899999999999999998765 2478999999999999
Q ss_pred ccccchhhHHHHHHhhceeeEEEecCCCCCC---CCCCCCHHHHHHHHHHHHhh--------------------------
Q 011082 369 ENRGLGHAFLRHIERTKVLAYVVDLASGLDG---RKGIKPWKQLRDLIIELEHH-------------------------- 419 (494)
Q Consensus 369 ~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~---~~~~~~~~~~~~l~~eL~~~-------------------------- 419 (494)
+++||+.+||.+++.+|+|+||||++...+. ....+|..+++.+..||...
T Consensus 83 ~GeGLGNkFL~~IRevdaI~hVVr~f~d~di~hv~~~vDP~~DIe~I~~EL~l~d~~~lek~~~r~~k~a~~~~~~~k~~ 162 (372)
T COG0012 83 KGEGLGNKFLDNIREVDAIIHVVRCFGDTDIEHVEGKVDPVEDIEIINTELILWDLESLEKRWERLEKRAKAGKKLDKEL 162 (372)
T ss_pred cCCCcchHHHHhhhhcCeEEEEEEecCCCcccCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 9999999999999999999999999864221 11134433332222221100
Q ss_pred --------------------------------------hcccCCCCEEEEEeCCCcCChH--HHHHHHHHHc--CCCCEE
Q 011082 420 --------------------------------------QEGLSDRPSLVVANKIDEDGAE--EVYEELERRV--QGVPIY 457 (494)
Q Consensus 420 --------------------------------------~~~l~~~P~IlVlNKiDl~~~~--e~~~~L~~~~--~~~~ii 457 (494)
..-+..+|+|+|+||.|....+ +..+.+++.. .+.++|
T Consensus 163 ~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~l~llt~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~~~~~~vV 242 (372)
T COG0012 163 KEELSLLGKLEEHLEEGKPARGLDLSKWSEEDLEALASLNLLTAKPMLYVANVSEDDLANLNEYVKRLKELAAKENAEVV 242 (372)
T ss_pred HHHHHHHHhHHHHHHhhhhhhcCCcccCCHHHHHHHHHhhhhhcCCeEEEEECCcccccchhHHHHHHHHHhhhcCCcEE
Confidence 0114689999999999987643 3366666665 345799
Q ss_pred EEEcccCCCHHH
Q 011082 458 PVCAVLEEGVPE 469 (494)
Q Consensus 458 ~ISA~~g~gI~~ 469 (494)
++||....-+.+
T Consensus 243 ~~sA~~E~eL~~ 254 (372)
T COG0012 243 PVSAAIELELRE 254 (372)
T ss_pred EeeHHHHHHHHh
Confidence 999975443333
No 25
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.85 E-value=4.3e-20 Score=169.56 Aligned_cols=163 Identities=28% Similarity=0.442 Sum_probs=116.4
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCcccccc-chhhHHHHH-Hhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRG-LGHAFLRHI-ERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~-L~~~fl~~i-~~a 384 (494)
++|+++|.+|||||||+++|++....+..++++|..+..+.+.+++..+.++||||+......... +....+..+ ..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 478999999999999999999988777788999999998888888889999999998643221111 101111111 236
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHH--HHHHHcCCCCEEEEEcc
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYE--ELERRVQGVPIYPVCAV 462 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~--~L~~~~~~~~ii~ISA~ 462 (494)
|++|+|+|+++... ........+..++... ..+.|+|+|+||+|+........ .+... ...+++++||+
T Consensus 81 d~~l~v~d~~~~~~-----~~~~~~~~~~~~l~~~---~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~-~~~~~~~~Sa~ 151 (168)
T cd01897 81 AAVLFLFDPSETCG-----YSLEEQLSLFEEIKPL---FKNKPVIVVLNKIDLLTFEDLSEIEEEEEL-EGEEVLKISTL 151 (168)
T ss_pred CcEEEEEeCCcccc-----cchHHHHHHHHHHHhh---cCcCCeEEEEEccccCchhhHHHHHHhhhh-ccCceEEEEec
Confidence 89999999986210 1223334455555432 23789999999999976554332 22222 45789999999
Q ss_pred cCCCHHHHHHHHHHHh
Q 011082 463 LEEGVPELKVGLRMLV 478 (494)
Q Consensus 463 ~g~gI~~L~~~I~~~l 478 (494)
++.|+++++++|.+.|
T Consensus 152 ~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 152 TEEGVDEVKNKACELL 167 (168)
T ss_pred ccCCHHHHHHHHHHHh
Confidence 9999999999998765
No 26
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=4.1e-20 Score=191.04 Aligned_cols=159 Identities=26% Similarity=0.307 Sum_probs=126.8
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCCc--cccccchhhHHHHHHh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGA--HENRGLGHAFLRHIER 383 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a--~~~~~L~~~fl~~i~~ 383 (494)
+.|+|||.||+|||||+|+|++.+. -++++|++|.|+..+...+.+..|.++||+|+.... .....+..+.+..++.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999876 469999999999999999999999999999998754 2233344556788999
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHHcCCCCEEEEEccc
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVL 463 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~~~~~ii~ISA~~ 463 (494)
||++|||+|..... .+ .-+.+...|.. .++|+|+|+||+|-...++...++-.+- -..+++|||.+
T Consensus 84 ADvilfvVD~~~Gi------t~--~D~~ia~~Lr~-----~~kpviLvvNK~D~~~~e~~~~efyslG-~g~~~~ISA~H 149 (444)
T COG1160 84 ADVILFVVDGREGI------TP--ADEEIAKILRR-----SKKPVILVVNKIDNLKAEELAYEFYSLG-FGEPVPISAEH 149 (444)
T ss_pred CCEEEEEEeCCCCC------CH--HHHHHHHHHHh-----cCCCEEEEEEcccCchhhhhHHHHHhcC-CCCceEeehhh
Confidence 99999999987632 22 22333344432 3699999999999886555444444432 34789999999
Q ss_pred CCCHHHHHHHHHHHhc
Q 011082 464 EEGVPELKVGLRMLVN 479 (494)
Q Consensus 464 g~gI~~L~~~I~~~l~ 479 (494)
|.|+.+|++.+...+.
T Consensus 150 g~Gi~dLld~v~~~l~ 165 (444)
T COG1160 150 GRGIGDLLDAVLELLP 165 (444)
T ss_pred ccCHHHHHHHHHhhcC
Confidence 9999999999999985
No 27
>PRK15494 era GTPase Era; Provisional
Probab=99.82 E-value=2.3e-19 Score=184.73 Aligned_cols=165 Identities=18% Similarity=0.245 Sum_probs=118.8
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCC-cccccceeecceeeEEeecCcceEEecCCCccCCcc-ccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAH-ENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~-i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~-~~~~L~~~fl~~i~~a 384 (494)
.+|+++|.+|||||||+|+|++.+.. +++.+.||.+...+.+..++.++.++||||+.+... ....+.......+..|
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~a 132 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSA 132 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhC
Confidence 38999999999999999999988653 466788898888888999899999999999965322 1112222334557899
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH--HHHHHHHHHcCCCCEEEEEcc
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE--EVYEELERRVQGVPIYPVCAV 462 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~--e~~~~L~~~~~~~~ii~ISA~ 462 (494)
|++|+|+|.+... . .....++..+... +.|.|+|+||+|+.... +..+.+....+...++++||+
T Consensus 133 Dvil~VvD~~~s~------~--~~~~~il~~l~~~-----~~p~IlViNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAk 199 (339)
T PRK15494 133 DLVLLIIDSLKSF------D--DITHNILDKLRSL-----NIVPIFLLNKIDIESKYLNDIKAFLTENHPDSLLFPISAL 199 (339)
T ss_pred CEEEEEEECCCCC------C--HHHHHHHHHHHhc-----CCCEEEEEEhhcCccccHHHHHHHHHhcCCCcEEEEEecc
Confidence 9999999976521 1 1122333444322 56889999999987541 222233222234579999999
Q ss_pred cCCCHHHHHHHHHHHhcccCCc
Q 011082 463 LEEGVPELKVGLRMLVNGEKSE 484 (494)
Q Consensus 463 ~g~gI~~L~~~I~~~l~~~~~~ 484 (494)
++.|+++|+++|...+.+.++.
T Consensus 200 tg~gv~eL~~~L~~~l~~~~~~ 221 (339)
T PRK15494 200 SGKNIDGLLEYITSKAKISPWL 221 (339)
T ss_pred CccCHHHHHHHHHHhCCCCCCC
Confidence 9999999999999998876543
No 28
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.82 E-value=1.4e-19 Score=185.81 Aligned_cols=159 Identities=30% Similarity=0.523 Sum_probs=120.9
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCc-----------------ceEEecCCCccCCccc
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI-----------------QITVADIPGLIKGAHE 369 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~-----------------~~~l~DtPGli~~a~~ 369 (494)
.+|+|||.||||||||+|+|++.++.+++|||||++|..|.+.+++. .+.++||||++.+++.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 37999999999999999999999999999999999999999988762 4899999999999999
Q ss_pred cccchhhHHHHHHhhceeeEEEecCCCCCCC---CCCCCHHHHHHHHHHHHhhh--------------------------
Q 011082 370 NRGLGHAFLRHIERTKVLAYVVDLASGLDGR---KGIKPWKQLRDLIIELEHHQ-------------------------- 420 (494)
Q Consensus 370 ~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~---~~~~~~~~~~~l~~eL~~~~-------------------------- 420 (494)
+.+++..|+.+++.||+++||+|+....... ...+|..+++.+..||..+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f~d~~~~~~~~~~dP~~d~~~i~~EL~~~d~~~~ek~~~k~~k~~~~~~~~~~~e~ 162 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCFEDDNITHVEGKVDPIRDIETINTELILADLETVEKRLERLEKKAKGGDKEAKAEL 162 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCccCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 8899999999999999999999986431111 11245554444333332111
Q ss_pred --------------------------------cccCCCCEEEEEeCCCc--CChHHHHHHHHHHc--CCCCEEEEEcccC
Q 011082 421 --------------------------------EGLSDRPSLVVANKIDE--DGAEEVYEELERRV--QGVPIYPVCAVLE 464 (494)
Q Consensus 421 --------------------------------~~l~~~P~IlVlNKiDl--~~~~e~~~~L~~~~--~~~~ii~ISA~~g 464 (494)
.-+..+|+|+|+|+.|. ....+..+.+.+.. .+.+++++||...
T Consensus 163 ~~l~~v~~~Le~~~~~~~~~~~~~e~~~l~~~~llt~KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~E 242 (364)
T PRK09601 163 ELLEKLLEHLEEGKPARTLELTDEEEKLLKSLQLLTAKPVLYVANVDEDDLADGNPYVKKVREIAAKEGAEVVVICAKIE 242 (364)
T ss_pred HHHHHHHHHHHcCCCcccCCCCHHHHHHHHHhcccccCCeEEEEECCccccccccHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 01457999999999985 23344555565533 3667999998543
Q ss_pred C
Q 011082 465 E 465 (494)
Q Consensus 465 ~ 465 (494)
.
T Consensus 243 ~ 243 (364)
T PRK09601 243 A 243 (364)
T ss_pred H
Confidence 3
No 29
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.82 E-value=6.4e-20 Score=182.65 Aligned_cols=87 Identities=41% Similarity=0.743 Sum_probs=81.8
Q ss_pred eeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCc-----------------ceEEecCCCccCCccccc
Q 011082 309 VGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI-----------------QITVADIPGLIKGAHENR 371 (494)
Q Consensus 309 V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~-----------------~~~l~DtPGli~~a~~~~ 371 (494)
|||||.||||||||+|+||+.+..+++|||||++|..|.+.+++. .+.++||||++++++.+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 689999999999999999999999999999999999999998874 489999999999999999
Q ss_pred cchhhHHHHHHhhceeeEEEecCC
Q 011082 372 GLGHAFLRHIERTKVLAYVVDLAS 395 (494)
Q Consensus 372 ~L~~~fl~~i~~ad~ll~VvD~s~ 395 (494)
+++..|+.+++.+|+++||+|+..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCcC
Confidence 999999999999999999999864
No 30
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.81 E-value=1.5e-20 Score=200.31 Aligned_cols=226 Identities=22% Similarity=0.263 Sum_probs=150.5
Q ss_pred hhhhhhhhhcccccCCcE-EEEccCCCCCcCCccccCCCCCchhcccccccCCCCCCcccccccccccCCCCCceeEEEE
Q 011082 223 GEKQIQYNIAELTKQGQR-VIIAYGGEGGLGNVCCPSVSKKPMVMKSKSYKNGPSDPKLASDDQSSLVAGEPGSESELIL 301 (494)
Q Consensus 223 ela~l~~~l~~l~~~~~~-~~~~~GG~GG~Gn~~~~~~~~~~~~~~~~~~~~ri~~l~~~~~~~~~~~~g~~ge~~~i~l 301 (494)
+++++.+.++++...+.. ++.+.+.... +--|.-+.. .....+.++.+++.++++++++...+. .++.
T Consensus 143 al~~l~G~l~~~~~~~r~~l~~~~a~iea--~iDf~ee~~--~~~~~~~i~~~i~~l~~~l~~l~~~~~--~~~~----- 211 (449)
T PRK05291 143 ALRQLQGALSKLINELREELLELLALVEA--AIDFPEEDI--EFLSDEKILEKLEELIAELEALLASAR--QGEI----- 211 (449)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHheE--EccCCCCCc--ccccHHHHHHHHHHHHHHHHHHHHHHH--HHHH-----
Confidence 788888877776555433 3333322110 001111100 000133455667777777776554332 2222
Q ss_pred EeeccceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCCccccccch-hhHHH
Q 011082 302 ELKSIADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLG-HAFLR 379 (494)
Q Consensus 302 elk~~~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~-~~fl~ 379 (494)
++...+|+++|+||||||||+|+|++.+. .+.++++||.++....+.+++..+.++||||+.+....-..++ ...+.
T Consensus 212 -~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~ 290 (449)
T PRK05291 212 -LREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSRE 290 (449)
T ss_pred -hhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHH
Confidence 34567899999999999999999999765 5788999999999999999999999999999865221111111 12356
Q ss_pred HHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHHcCCCCEEEE
Q 011082 380 HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPV 459 (494)
Q Consensus 380 ~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~~~~~ii~I 459 (494)
++..+|++++|+|++++ ........+ .. ..+.|+++|+||+|+....... .....++++|
T Consensus 291 ~~~~aD~il~VvD~s~~-------~s~~~~~~l-~~-------~~~~piiiV~NK~DL~~~~~~~-----~~~~~~~i~i 350 (449)
T PRK05291 291 AIEEADLVLLVLDASEP-------LTEEDDEIL-EE-------LKDKPVIVVLNKADLTGEIDLE-----EENGKPVIRI 350 (449)
T ss_pred HHHhCCEEEEEecCCCC-------CChhHHHHH-Hh-------cCCCCcEEEEEhhhccccchhh-----hccCCceEEE
Confidence 78899999999999873 222322222 11 2468999999999997654322 2234678999
Q ss_pred EcccCCCHHHHHHHHHHHhcc
Q 011082 460 CAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~ 480 (494)
||+++.|+++|+++|.+.+..
T Consensus 351 SAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 351 SAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred EeeCCCCHHHHHHHHHHHHhh
Confidence 999999999999999998864
No 31
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.81 E-value=2.1e-19 Score=171.53 Aligned_cols=170 Identities=28% Similarity=0.403 Sum_probs=130.3
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
.++|++||+|.+||||||..||......++|.|||+....|.+.+++..+.+.|.||++++++++++.+.+.....+.||
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaD 141 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTAD 141 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeeccc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEecCCCCCCC----------------C----------------------CCCCHHHHHHHHHHHHhhh-------
Q 011082 386 VLAYVVDLASGLDGR----------------K----------------------GIKPWKQLRDLIIELEHHQ------- 420 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~----------------~----------------------~~~~~~~~~~l~~eL~~~~------- 420 (494)
++|+|+|++...... . ..-.......++.+..-++
T Consensus 142 lilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~Re 221 (364)
T KOG1486|consen 142 LILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLFRE 221 (364)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEEec
Confidence 999999998631100 0 0000111122222211111
Q ss_pred ------------cccCCCCEEEEEeCCCcCChHHHHHHHHHHcCCCCEEEEEcccCCCHHHHHHHHHHHhc
Q 011082 421 ------------EGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 421 ------------~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~~~~~ii~ISA~~g~gI~~L~~~I~~~l~ 479 (494)
..-.-.+++.|.||+|..+.+++ +.+.++ ...+.||+....|++.|++.||+.+.
T Consensus 222 D~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~eev-drlAr~---PnsvViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 222 DCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSIEEV-DRLARQ---PNSVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred CCChHHHHHHHhccceEEEEEEEeeccceecHHHH-HHHhcC---CCcEEEEeccccCHHHHHHHHHHHhc
Confidence 00113578888999999886653 334432 34578999999999999999999875
No 32
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.80 E-value=8.4e-19 Score=174.12 Aligned_cols=164 Identities=27% Similarity=0.423 Sum_probs=121.6
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCcccccc-chhhHHHHHH-
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRG-LGHAFLRHIE- 382 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~-L~~~fl~~i~- 382 (494)
..++|.+.|+||+|||||+++||+++|.+++|||||...++|++.++..+++++||||+.+..-+..+ ...+-...++
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h 246 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRH 246 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence 45699999999999999999999999999999999999999999999999999999999874333221 1111111222
Q ss_pred hhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHHc---CCCCEEEE
Q 011082 383 RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRV---QGVPIYPV 459 (494)
Q Consensus 383 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~---~~~~ii~I 459 (494)
-.+++||++|.+... + -+.+....++.++... ...|+++|+||+|+.+.+... .+.... .....+.+
T Consensus 247 l~~~IlF~~D~Se~c----g-y~lE~Q~~L~~eIk~~----f~~p~v~V~nK~D~~~~e~~~-~~~~~~~~~~~~~~~~~ 316 (346)
T COG1084 247 LAGVILFLFDPSETC----G-YSLEEQISLLEEIKEL----FKAPIVVVINKIDIADEEKLE-EIEASVLEEGGEEPLKI 316 (346)
T ss_pred hcCeEEEEEcCcccc----C-CCHHHHHHHHHHHHHh----cCCCeEEEEecccccchhHHH-HHHHHHHhhccccccce
Confidence 257899999998732 2 4556666677777543 248999999999998654322 222112 23345788
Q ss_pred EcccCCCHHHHHHHHHHHh
Q 011082 460 CAVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l 478 (494)
|+..+.+++.+...+....
T Consensus 317 ~~~~~~~~d~~~~~v~~~a 335 (346)
T COG1084 317 SATKGCGLDKLREEVRKTA 335 (346)
T ss_pred eeeehhhHHHHHHHHHHHh
Confidence 9999999999988887763
No 33
>PRK00089 era GTPase Era; Reviewed
Probab=99.79 E-value=1.7e-18 Score=174.59 Aligned_cols=163 Identities=29% Similarity=0.348 Sum_probs=119.2
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCC-cccccceeecceeeEEeecCcceEEecCCCccCCccc-cccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE-NRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~-i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~-~~~L~~~fl~~i~~ad 385 (494)
.|+|+|.||||||||+|+|++.+.. +++.+.||.....+.+..++.+++++||||+.+.... +..+.......+..+|
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D 86 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVD 86 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCC
Confidence 6999999999999999999998763 5677888887777777766689999999999764321 1122233455678899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcC-ChHHHH---HHHHHHcCCCCEEEEEc
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDED-GAEEVY---EELERRVQGVPIYPVCA 461 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~-~~~e~~---~~L~~~~~~~~ii~ISA 461 (494)
++++|+|+++.. ......+...+.. .+.|.++|+||+|+. ...... +.+.+..+..+++++||
T Consensus 87 ~il~vvd~~~~~--------~~~~~~i~~~l~~-----~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA 153 (292)
T PRK00089 87 LVLFVVDADEKI--------GPGDEFILEKLKK-----VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISA 153 (292)
T ss_pred EEEEEEeCCCCC--------ChhHHHHHHHHhh-----cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecC
Confidence 999999998621 1222333333321 268999999999998 434333 33433334568999999
Q ss_pred ccCCCHHHHHHHHHHHhcccCC
Q 011082 462 VLEEGVPELKVGLRMLVNGEKS 483 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l~~~~~ 483 (494)
+++.|+++|++.|...+.+.++
T Consensus 154 ~~~~gv~~L~~~L~~~l~~~~~ 175 (292)
T PRK00089 154 LKGDNVDELLDVIAKYLPEGPP 175 (292)
T ss_pred CCCCCHHHHHHHHHHhCCCCCC
Confidence 9999999999999999876553
No 34
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.79 E-value=8.9e-19 Score=158.60 Aligned_cols=152 Identities=29% Similarity=0.441 Sum_probs=111.4
Q ss_pred eeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccc--cccchhhHHHHHHhhceee
Q 011082 311 LVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE--NRGLGHAFLRHIERTKVLA 388 (494)
Q Consensus 311 LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~--~~~L~~~fl~~i~~ad~ll 388 (494)
|+|++|+|||||+++|++....+..++++|.+...+.+.+++..+.++||||+...... ...+...++.. ..+|+++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~vi 79 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLG-EKPDLIV 79 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcC-CCCcEEE
Confidence 68999999999999999987777888999999998889998889999999998653221 11122222222 4899999
Q ss_pred EEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH---HHHHHHHHcCCCCEEEEEcccCC
Q 011082 389 YVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE---VYEELERRVQGVPIYPVCAVLEE 465 (494)
Q Consensus 389 ~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e---~~~~L~~~~~~~~ii~ISA~~g~ 465 (494)
+|+|+.+. .. ...+..++.. .++|.|+|+||+|+..... ..+.+.+.+ +.+++++||+++.
T Consensus 80 ~v~d~~~~-------~~---~~~~~~~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~iSa~~~~ 143 (158)
T cd01879 80 NVVDATNL-------ER---NLYLTLQLLE-----LGLPVVVALNMIDEAEKRGIKIDLDKLSELL-GVPVVPTSARKGE 143 (158)
T ss_pred EEeeCCcc-------hh---HHHHHHHHHH-----cCCCEEEEEehhhhcccccchhhHHHHHHhh-CCCeEEEEccCCC
Confidence 99998762 11 1223333332 2689999999999976432 123343333 5689999999999
Q ss_pred CHHHHHHHHHHHhc
Q 011082 466 GVPELKVGLRMLVN 479 (494)
Q Consensus 466 gI~~L~~~I~~~l~ 479 (494)
|++++++.|..+++
T Consensus 144 ~~~~l~~~l~~~~~ 157 (158)
T cd01879 144 GIDELKDAIAELAE 157 (158)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999987653
No 35
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.79 E-value=3.1e-18 Score=155.86 Aligned_cols=150 Identities=27% Similarity=0.332 Sum_probs=103.5
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCC---cccccceeecceeeEEeec-CcceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPA---VGHYSFTTLRPNLGNMNFD-DIQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~---i~~~~ftTl~p~~g~v~~~-~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
.|+++|.+|||||||+++|++.... ....+.+|.+.....+.+. +..+.++||||..+ +.......+..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-------~~~~~~~~~~~ 74 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-------FIKNMLAGAGG 74 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH-------HHHHHHhhhhc
Confidence 5899999999999999999975321 1223456777766667776 67899999999743 33344556778
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH---HHHHHHHHHc-----CCCC
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRV-----QGVP 455 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~---e~~~~L~~~~-----~~~~ 455 (494)
+|++++|+|+++. ...+....+..+.. ...+|.|+|+||+|+.... ...+.+.+.+ ...+
T Consensus 75 ad~ii~V~d~~~~--------~~~~~~~~~~~~~~----~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (164)
T cd04171 75 IDLVLLVVAADEG--------IMPQTREHLEILEL----LGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAP 142 (164)
T ss_pred CCEEEEEEECCCC--------ccHhHHHHHHHHHH----hCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCc
Confidence 9999999998762 11111121122211 1235999999999998653 2233333333 3568
Q ss_pred EEEEEcccCCCHHHHHHHHHH
Q 011082 456 IYPVCAVLEEGVPELKVGLRM 476 (494)
Q Consensus 456 ii~ISA~~g~gI~~L~~~I~~ 476 (494)
++++||++++|++++++.|..
T Consensus 143 ~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 143 IFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred EEEEeCCCCcCHHHHHHHHhh
Confidence 999999999999999998864
No 36
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.79 E-value=3e-18 Score=154.55 Aligned_cols=154 Identities=23% Similarity=0.295 Sum_probs=112.4
Q ss_pred eeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCCcc-ccccchhhHHHHHHhhcee
Q 011082 310 GLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAH-ENRGLGHAFLRHIERTKVL 387 (494)
Q Consensus 310 ~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~-~~~~L~~~fl~~i~~ad~l 387 (494)
+|+|.+|||||||+++|++... .+.+++.+|.+.....+.+++..+.++||||+.+... ....+...+...+..+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 5899999999999999998753 4577888888888888888888999999999976433 1112233445667889999
Q ss_pred eEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHHcCCCCEEEEEcccCCCH
Q 011082 388 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVLEEGV 467 (494)
Q Consensus 388 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~~~~~ii~ISA~~g~gI 467 (494)
++|+|..+... ... ..+...+.. ...|+++|+||+|+.........+.. ....+++++||+++.|+
T Consensus 81 i~v~d~~~~~~-------~~~-~~~~~~~~~-----~~~piiiv~nK~D~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gv 146 (157)
T cd01894 81 LFVVDGREGLT-------PAD-EEIAKYLRK-----SKKPVILVVNKVDNIKEEDEAAEFYS-LGFGEPIPISAEHGRGI 146 (157)
T ss_pred EEEEeccccCC-------ccH-HHHHHHHHh-----cCCCEEEEEECcccCChHHHHHHHHh-cCCCCeEEEecccCCCH
Confidence 99999876321 111 122222322 25899999999999886654333333 22237899999999999
Q ss_pred HHHHHHHHHH
Q 011082 468 PELKVGLRML 477 (494)
Q Consensus 468 ~~L~~~I~~~ 477 (494)
++++++|.+.
T Consensus 147 ~~l~~~l~~~ 156 (157)
T cd01894 147 GDLLDAILEL 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999999865
No 37
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.78 E-value=2.7e-18 Score=156.36 Aligned_cols=154 Identities=16% Similarity=0.167 Sum_probs=114.7
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|++|||||||+++|++.+......+.++.+.....+.+++ ..+.+|||||... +.......+..+|
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~-------~~~~~~~~~~~~~ 74 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQER-------FRSLIPSYIRDSS 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHhccCC
Confidence 689999999999999999999877667777777777777777776 4689999999643 2222344578899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEEc
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~ISA 461 (494)
++++|+|+++ ..++.....++..+..... .+.|+++|+||+|+.... +....+.+.. +.+++++||
T Consensus 75 ~ii~v~d~~~-------~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 144 (161)
T cd01861 75 VAVVVYDITN-------RQSFDNTDKWIDDVRDERG--NDVIIVLVGNKTDLSDKRQVSTEEGEKKAKEL-NAMFIETSA 144 (161)
T ss_pred EEEEEEECcC-------HHHHHHHHHHHHHHHHhCC--CCCEEEEEEEChhccccCccCHHHHHHHHHHh-CCEEEEEeC
Confidence 9999999987 2445666666665543321 258999999999995321 2223333332 578999999
Q ss_pred ccCCCHHHHHHHHHHHh
Q 011082 462 VLEEGVPELKVGLRMLV 478 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l 478 (494)
+++.|+++++++|.+.+
T Consensus 145 ~~~~~v~~l~~~i~~~l 161 (161)
T cd01861 145 KAGHNVKELFRKIASAL 161 (161)
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 99999999999998753
No 38
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.78 E-value=1.8e-18 Score=158.57 Aligned_cols=154 Identities=22% Similarity=0.301 Sum_probs=108.3
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCc----ccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAV----GHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i----~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
+|+++|++|||||||+++|++..... .....+|.....+.+.+++..+.++||||... +...+..++..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~ 73 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQES-------LRSLWDKYYAE 73 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChh-------hHHHHHHHhCC
Confidence 47899999999999999998753321 22335566667778888889999999999864 33334566889
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH---HHHHHHHHHc-----CCCC
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRV-----QGVP 455 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~---e~~~~L~~~~-----~~~~ 455 (494)
+|++++|+|+++. ........++..+... ....+.|+++|+||+|+.... +..+.+.... ...+
T Consensus 74 ~~~~v~vvd~~~~-------~~~~~~~~~~~~~~~~-~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (167)
T cd04160 74 CHAIIYVIDSTDR-------ERFEESKSALEKVLRN-EALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCL 145 (167)
T ss_pred CCEEEEEEECchH-------HHHHHHHHHHHHHHhC-hhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceE
Confidence 9999999998762 3344444444443321 123478999999999986542 2222222211 2347
Q ss_pred EEEEEcccCCCHHHHHHHHHH
Q 011082 456 IYPVCAVLEEGVPELKVGLRM 476 (494)
Q Consensus 456 ii~ISA~~g~gI~~L~~~I~~ 476 (494)
++++||++++|+++++++|.+
T Consensus 146 ~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 146 VLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred EEEeeCCCCcCHHHHHHHHhc
Confidence 999999999999999999864
No 39
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.78 E-value=5.6e-18 Score=153.61 Aligned_cols=154 Identities=19% Similarity=0.209 Sum_probs=107.3
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|.+|||||||+++|++... ...+..|+.+.....+.+++ ..+.+|||||..+ +......++..++
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~l~~~~~~~~~ 74 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE-------YSAMRDQYMRTGE 74 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-cCCcCCcchheEEEEEEECCEEEEEEEEECCCCcc-------hHHHHHHHHhcCC
Confidence 689999999999999999997642 33444444333334455555 4577899999754 2223345677899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH---HHHHHHHHcCCCCEEEEEcc
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE---VYEELERRVQGVPIYPVCAV 462 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e---~~~~L~~~~~~~~ii~ISA~ 462 (494)
++++|+|+++ ..++..+..+...+..+. ...+.|+++|+||+|+..... ....+.+.+ +.+++++||+
T Consensus 75 ~~i~v~~~~~-------~~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~Sa~ 145 (162)
T cd04138 75 GFLCVFAINS-------RKSFEDIHTYREQIKRVK-DSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSY-GIPYIETSAK 145 (162)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccccceecHHHHHHHHHHh-CCeEEEecCC
Confidence 9999999987 245556666666655442 224789999999999975321 122233332 5689999999
Q ss_pred cCCCHHHHHHHHHHHh
Q 011082 463 LEEGVPELKVGLRMLV 478 (494)
Q Consensus 463 ~g~gI~~L~~~I~~~l 478 (494)
++.|+++++++|.+.+
T Consensus 146 ~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 146 TRQGVEEAFYTLVREI 161 (162)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998654
No 40
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.78 E-value=7.2e-18 Score=162.57 Aligned_cols=159 Identities=16% Similarity=0.141 Sum_probs=115.2
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC---cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD---IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~---~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
+|++||++|||||||+++|++........+..+++.....+.+++ ..+.+|||||... ....+...+..+
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~-------~~~l~~~~~~~a 74 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI-------GGKMLDKYIYGA 74 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHH-------HHHHHHHHhhcC
Confidence 589999999999999999997654333334455566666666654 5789999999643 112233457889
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcc-cCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEG-LSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPV 459 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~-l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~I 459 (494)
|++|+|+|+++ ..+++.+..+..++..+... ....|+|+|+||+|+.... +....+.+.+ +.+++++
T Consensus 75 d~iilV~D~t~-------~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~-~~~~~~i 146 (215)
T cd04109 75 HAVFLVYDVTN-------SQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQAN-GMESCLV 146 (215)
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHc-CCEEEEE
Confidence 99999999987 35677777777777665322 2245788999999997432 2333444444 4679999
Q ss_pred EcccCCCHHHHHHHHHHHhccc
Q 011082 460 CAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~~ 481 (494)
||++|+|+++++++|...+...
T Consensus 147 SAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 147 SAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred ECCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999887653
No 41
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.78 E-value=8.5e-18 Score=153.16 Aligned_cols=154 Identities=21% Similarity=0.228 Sum_probs=109.9
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|.+|||||||++++..... ...+..|+.+.....+.+++ ..+.+|||||..+. ......++..+|
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~~~~ 74 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQF-------TAMRDLYIKNGQ 74 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CcccCCchhhhEEEEEEECCEEEEEEEEECCCcccc-------chHHHHHhhcCC
Confidence 689999999999999999986532 33444444444444555666 45678999998652 222234567899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEEc
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~ISA 461 (494)
++++|+|+++ ..+++.+..+..++..+. ...+.|+|+|+||+|+.... +....+.+.+ +.+++++||
T Consensus 75 ~~ilv~d~~~-------~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 145 (163)
T cd04136 75 GFVLVYSITS-------QSSFNDLQDLREQILRVK-DTENVPMVLVGNKCDLEDERVVSREEGQALARQW-GCPFYETSA 145 (163)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccccceecHHHHHHHHHHc-CCeEEEecC
Confidence 9999999987 355666777766665543 22468999999999986532 2223344443 378999999
Q ss_pred ccCCCHHHHHHHHHHHh
Q 011082 462 VLEEGVPELKVGLRMLV 478 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l 478 (494)
+++.|+++++++|.+.+
T Consensus 146 ~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 146 KSKINVDEVFADLVRQI 162 (163)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999998754
No 42
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.78 E-value=6.1e-18 Score=155.56 Aligned_cols=155 Identities=14% Similarity=0.183 Sum_probs=108.9
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|.+|||||||+++|++.+......+..+.+.....+..++ ..+.+|||||... +......+++.+|
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~-------~~~~~~~~~~~~~ 75 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQER-------YRTITTAYYRGAM 75 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHccCCc
Confidence 699999999999999999998754322222221122222333333 5689999999754 2223455678899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEEc
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~ISA 461 (494)
++++|+|+++ ..+.+.+..+..++..+. ....|.++|+||+|+.... +....+.+.+ +.+++++||
T Consensus 76 ~~l~v~d~~~-------~~s~~~~~~~~~~i~~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 145 (165)
T cd01865 76 GFILMYDITN-------EESFNAVQDWSTQIKTYS--WDNAQVILVGNKCDMEDERVVSSERGRQLADQL-GFEFFEASA 145 (165)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhC--CCCCCEEEEEECcccCcccccCHHHHHHHHHHc-CCEEEEEEC
Confidence 9999999987 356667777777765543 2367999999999996532 2223344433 468999999
Q ss_pred ccCCCHHHHHHHHHHHhc
Q 011082 462 VLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l~ 479 (494)
+++.|+++|++.|...+.
T Consensus 146 ~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 146 KENINVKQVFERLVDIIC 163 (165)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988764
No 43
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.78 E-value=1.8e-18 Score=179.29 Aligned_cols=163 Identities=24% Similarity=0.301 Sum_probs=126.1
Q ss_pred eeccceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCCccccccchh-hHHHH
Q 011082 303 LKSIADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGH-AFLRH 380 (494)
Q Consensus 303 lk~~~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~-~fl~~ 380 (494)
++.+.+|+|+|.||||||||||+|++.+. -+.+.|+||.|.....+.+++.++.++||.|+-+....-...+- .-...
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 57788999999999999999999999866 46999999999999999999999999999999764442222221 22467
Q ss_pred HHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHHcCCCCEEEEE
Q 011082 381 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 381 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~~~~~ii~IS 460 (494)
++.||++|+|+|.+.+. +......+ . + ...++|.++|+||+|+........ + +...+.+++.+|
T Consensus 294 i~~ADlvL~v~D~~~~~-------~~~d~~~~-~-~-----~~~~~~~i~v~NK~DL~~~~~~~~-~-~~~~~~~~i~iS 357 (454)
T COG0486 294 IEEADLVLFVLDASQPL-------DKEDLALI-E-L-----LPKKKPIIVVLNKADLVSKIELES-E-KLANGDAIISIS 357 (454)
T ss_pred HHhCCEEEEEEeCCCCC-------chhhHHHH-H-h-----cccCCCEEEEEechhcccccccch-h-hccCCCceEEEE
Confidence 89999999999998731 12222211 1 1 123789999999999987654222 2 333456799999
Q ss_pred cccCCCHHHHHHHHHHHhccc
Q 011082 461 AVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~~ 481 (494)
|++++|++.|.+.|.+.+...
T Consensus 358 a~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 358 AKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred ecCccCHHHHHHHHHHHHhhc
Confidence 999999999999999988765
No 44
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.77 E-value=4.2e-18 Score=156.04 Aligned_cols=155 Identities=19% Similarity=0.206 Sum_probs=113.3
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+++|.+|||||||+++|++........+..+.+.....+..++ ..+.++||||... +......+++.+
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~~ 76 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQER-------YRAITSAYYRGA 76 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHH-------HHHHHHHHHCCC
Confidence 3799999999999999999998765555556655555566666666 4688999999754 222233456789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~IS 460 (494)
+++++|+|+++ ..+...+..++.++..... .+.|+++|+||+|+.... +....+... .+.+++++|
T Consensus 77 ~~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~--~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~S 146 (165)
T cd01868 77 VGALLVYDITK-------KQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAVPTEEAKAFAEK-NGLSFIETS 146 (165)
T ss_pred CEEEEEEECcC-------HHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccccCCHHHHHHHHHH-cCCEEEEEE
Confidence 99999999986 3556667777776655432 258999999999986532 222233333 356899999
Q ss_pred cccCCCHHHHHHHHHHHh
Q 011082 461 AVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l 478 (494)
|+++.|++++++.|...+
T Consensus 147 a~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 147 ALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998764
No 45
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.77 E-value=1.1e-17 Score=159.53 Aligned_cols=170 Identities=15% Similarity=0.185 Sum_probs=114.1
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCcc-ccccchhhHHHHHHhh
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAH-ENRGLGHAFLRHIERT 384 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~-~~~~L~~~fl~~i~~a 384 (494)
+|+|+|.+|||||||++++++........|.++.+.....+.+++ ..+.++||||+..... ............+..+
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~a 81 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNS 81 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccC
Confidence 689999999999999999997643322233333333334556666 5678999999754211 0000111123457889
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhc-ccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQE-GLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPV 459 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~-~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~I 459 (494)
|++|+|+|+++ ..+++.+..+..++..+.. .....|+|+|+||+|+.... +....+.....+.+++++
T Consensus 82 d~iilv~D~~~-------~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~ 154 (198)
T cd04142 82 RAFILVYDICS-------PDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLEC 154 (198)
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEe
Confidence 99999999987 3566667766666655421 12468999999999995432 222333222235789999
Q ss_pred EcccCCCHHHHHHHHHHHhcccCCc
Q 011082 460 CAVLEEGVPELKVGLRMLVNGEKSE 484 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~~~~~ 484 (494)
||++|.|+++|++.+...+....+.
T Consensus 155 Sak~g~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 155 SAKYNWHILLLFKELLISATTRGRS 179 (198)
T ss_pred cCCCCCCHHHHHHHHHHHhhccCCC
Confidence 9999999999999999877665444
No 46
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.77 E-value=1.2e-17 Score=152.33 Aligned_cols=154 Identities=17% Similarity=0.182 Sum_probs=108.2
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|.+|+|||||++++.+... ...+..|+.+.....+.+++ ..+.++||||..+ +.......+..+|
T Consensus 4 ki~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~~ 75 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQSYF-VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEE-------FSAMREQYMRTGE 75 (164)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceEEEEEEECCEEEEEEEEECCCCcc-------hhHHHHHHHhhCC
Confidence 799999999999999999987533 34444444333333444555 4678999999764 2223345678899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEEc
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~ISA 461 (494)
++++|+|+++ ...+.....+..++.... ...+.|+|+|+||+|+.... +....+.+.. +.+++++||
T Consensus 76 ~~ilv~d~~~-------~~s~~~~~~~~~~~~~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 146 (164)
T cd04145 76 GFLLVFSVTD-------RGSFEEVDKFHTQILRVK-DRDEFPMILVGNKADLEHQRKVSREEGQELARKL-KIPYIETSA 146 (164)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHHh-CCCCCCEEEEeeCccccccceecHHHHHHHHHHc-CCcEEEeeC
Confidence 9999999987 245566666666654432 12368999999999996532 1222333332 468999999
Q ss_pred ccCCCHHHHHHHHHHHh
Q 011082 462 VLEEGVPELKVGLRMLV 478 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l 478 (494)
+++.|++++++.|.+.+
T Consensus 147 ~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 147 KDRLNVDKAFHDLVRVI 163 (164)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 99999999999998765
No 47
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.77 E-value=1.4e-17 Score=152.45 Aligned_cols=153 Identities=27% Similarity=0.274 Sum_probs=107.0
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeec---CcceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD---DIQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~---~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
+.|+|+|++|||||||+++|++........+++|.+.....+... +..+.++||||... +.......+..
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~-------~~~~~~~~~~~ 73 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA-------FTNMRARGASL 73 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH-------HHHHHHHHHhh
Confidence 469999999999999999999876655555666666555555554 57899999999754 22223345678
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh--HHHHHHHHHHc--------CC
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYEELERRV--------QG 453 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~--~e~~~~L~~~~--------~~ 453 (494)
+|++++|+|+++. .. .+....+..+.. .+.|.++|+||+|+... +.....+.... ..
T Consensus 74 ~d~il~v~d~~~~-------~~-~~~~~~~~~~~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (168)
T cd01887 74 TDIAILVVAADDG-------VM-PQTIEAIKLAKA-----ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGD 140 (168)
T ss_pred cCEEEEEEECCCC-------cc-HHHHHHHHHHHH-----cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCc
Confidence 9999999999863 11 122222222322 36899999999998753 22223332211 23
Q ss_pred CCEEEEEcccCCCHHHHHHHHHHHhc
Q 011082 454 VPIYPVCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 454 ~~ii~ISA~~g~gI~~L~~~I~~~l~ 479 (494)
.+++++||++++|+++|+++|.++..
T Consensus 141 ~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 141 VQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred CcEEEeecccCCCHHHHHHHHHHhhh
Confidence 57999999999999999999987654
No 48
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.77 E-value=1.5e-17 Score=151.70 Aligned_cols=156 Identities=17% Similarity=0.190 Sum_probs=108.2
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|.+|||||||+++|++.+......+..+.+.....+..++ ..+.+|||||... +.......+..+|
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~~d 74 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE-------YLEVRNEFYKDTQ 74 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHH-------HHHHHHHHhccCC
Confidence 689999999999999999998754322222222222233444444 6788999999854 1122334567899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcc---cCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEE
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEG---LSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYP 458 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~---l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~ 458 (494)
++|+|+|+++ ..++..+..+..++..+... ....|+++|+||+|+... .+....+.+.. +.++++
T Consensus 75 ~~ilv~D~~~-------~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~ 146 (168)
T cd04119 75 GVLLVYDVTD-------RQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESK-GFKYFE 146 (168)
T ss_pred EEEEEEECCC-------HHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHc-CCeEEE
Confidence 9999999987 34566677777777665322 246899999999999631 22222333333 468999
Q ss_pred EEcccCCCHHHHHHHHHHHh
Q 011082 459 VCAVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 459 ISA~~g~gI~~L~~~I~~~l 478 (494)
+||+++.|++++++.|.+.+
T Consensus 147 ~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 147 TSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999998765
No 49
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.77 E-value=8.7e-18 Score=155.12 Aligned_cols=156 Identities=16% Similarity=0.153 Sum_probs=112.9
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|++||.+|||||||++++++.+......+..+.+.....+..++ ..+.+|||||..+ +......+++.+
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~ 77 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES-------FRSITRSYYRGA 77 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHhccC
Confidence 4799999999999999999998765443334434444445555555 5789999999643 333344567889
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~IS 460 (494)
|++|+|+|+++ ..+...+..++.++..+. ....|+|+|+||+|+.... +....+.... +..++++|
T Consensus 78 d~il~v~d~~~-------~~s~~~~~~~~~~~~~~~--~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~e~S 147 (168)
T cd01866 78 AGALLVYDITR-------RETFNHLTSWLEDARQHS--NSNMTIMLIGNKCDLESRREVSYEEGEAFAKEH-GLIFMETS 147 (168)
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHhC--CCCCcEEEEEECcccccccCCCHHHHHHHHHHc-CCEEEEEe
Confidence 99999999986 356677777777776542 2468999999999997422 2222232322 56899999
Q ss_pred cccCCCHHHHHHHHHHHhc
Q 011082 461 AVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~ 479 (494)
|++++|+++++..+.+.+.
T Consensus 148 a~~~~~i~~~~~~~~~~~~ 166 (168)
T cd01866 148 AKTASNVEEAFINTAKEIY 166 (168)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987764
No 50
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.76 E-value=9.3e-18 Score=154.04 Aligned_cols=156 Identities=16% Similarity=0.216 Sum_probs=111.4
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+++|++|+|||||++++.+........+..+.+.....+.+++ ..+.++||||... +.......++.+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~ 75 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER-------FRTITSSYYRGA 75 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHh-------HHHHHHHHhCcC
Confidence 3799999999999999999998654333233333334444555555 4689999999754 222233456789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++ ..++..+..++.++..+. ..+.|.++|+||+|+.... +....+.+.. +.+++++|
T Consensus 76 ~~ii~v~d~~~-------~~s~~~l~~~~~~~~~~~--~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S 145 (166)
T cd01869 76 HGIIIVYDVTD-------QESFNNVKQWLQEIDRYA--SENVNKLLVGNKCDLTDKRVVDYSEAQEFADEL-GIPFLETS 145 (166)
T ss_pred CEEEEEEECcC-------HHHHHhHHHHHHHHHHhC--CCCCcEEEEEEChhcccccCCCHHHHHHHHHHc-CCeEEEEE
Confidence 99999999987 356677777777766553 2368999999999986532 2223333333 56899999
Q ss_pred cccCCCHHHHHHHHHHHhc
Q 011082 461 AVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~ 479 (494)
|+++.|+++++..|.+.+.
T Consensus 146 a~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 146 AKNATNVEQAFMTMAREIK 164 (166)
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 9999999999999988764
No 51
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.76 E-value=1.3e-17 Score=153.12 Aligned_cols=155 Identities=13% Similarity=0.130 Sum_probs=107.8
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+++|++|||||||+++|..........+..+.+.....+.+++ ..+.++||||... +.......+..+
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-------~~~~~~~~~~~~ 76 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQER-------FRTITQSYYRSA 76 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHhccC
Confidence 4799999999999999999987543221112222333444555565 4789999999743 222234456779
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++ ..++..+..++.++.... ....|.|+|+||+|+.... +....+.+.+....++++|
T Consensus 77 d~~llv~d~~~-------~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~S 147 (165)
T cd01864 77 NGAIIAYDITR-------RSSFESVPHWIEEVEKYG--ASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETS 147 (165)
T ss_pred CEEEEEEECcC-------HHHHHhHHHHHHHHHHhC--CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEE
Confidence 99999999987 345666666777665432 2367999999999997542 2233444444445789999
Q ss_pred cccCCCHHHHHHHHHHH
Q 011082 461 AVLEEGVPELKVGLRML 477 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~ 477 (494)
|+++.|+++++..|.+.
T Consensus 148 a~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 148 AKESQNVEEAFLLMATE 164 (165)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 99999999999999865
No 52
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.76 E-value=2.6e-17 Score=150.76 Aligned_cols=155 Identities=19% Similarity=0.220 Sum_probs=109.9
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|.+|||||||++++... .....++.|+.+.....+.+++ ..+.+|||||... +.......+..+|
T Consensus 3 ki~~~G~~~~GKTsli~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~~d 74 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQG-IFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ-------FTAMRDLYMKNGQ 74 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC-CCCcccCCcchheEEEEEEECCEEEEEEEEECCCccc-------chhHHHHHHhhCC
Confidence 6899999999999999999854 2334455555444444555655 4567999999854 2223344678899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEEc
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~ISA 461 (494)
++++|+|+++ ..+++....+...+..+. ...+.|+++|+||+|+.... +..+.+.+.+ +.+++++||
T Consensus 75 ~~ilv~d~~~-------~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 145 (164)
T cd04175 75 GFVLVYSITA-------QSTFNDLQDLREQILRVK-DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW-GCAFLETSA 145 (164)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECCcchhccEEcHHHHHHHHHHh-CCEEEEeeC
Confidence 9999999886 245556666666655432 23478999999999996431 2233444443 468999999
Q ss_pred ccCCCHHHHHHHHHHHhc
Q 011082 462 VLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l~ 479 (494)
+++.|+++++.+|.+.+.
T Consensus 146 ~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 146 KAKINVNEIFYDLVRQIN 163 (164)
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999987653
No 53
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.76 E-value=1.2e-17 Score=150.47 Aligned_cols=153 Identities=28% Similarity=0.324 Sum_probs=113.4
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCCccccc-cchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENR-GLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~-~L~~~fl~~i~~a 384 (494)
.+|+++|++|||||||+++|++... .+.+++.+|.+...+.+.+.+..+.++||||+.+...... .........+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 3689999999999999999998754 4577888888888888888888899999999876432100 0011234567899
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHHcCCCCEEEEEcccC
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVLE 464 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~~~~~ii~ISA~~g 464 (494)
|++++|+|++.. ......+.+.. ....|+++|+||+|+.+.... .......+++++||+++
T Consensus 82 ~~~v~v~d~~~~-------~~~~~~~~~~~--------~~~~~vi~v~nK~D~~~~~~~----~~~~~~~~~~~~Sa~~~ 142 (157)
T cd04164 82 DLVLFVIDASRG-------LDEEDLEILEL--------PADKPIIVVLNKSDLLPDSEL----LSLLAGKPIIAISAKTG 142 (157)
T ss_pred CEEEEEEECCCC-------CCHHHHHHHHh--------hcCCCEEEEEEchhcCCcccc----ccccCCCceEEEECCCC
Confidence 999999999862 23333222211 247899999999999875543 11223568999999999
Q ss_pred CCHHHHHHHHHHHh
Q 011082 465 EGVPELKVGLRMLV 478 (494)
Q Consensus 465 ~gI~~L~~~I~~~l 478 (494)
.|+++|+++|...+
T Consensus 143 ~~v~~l~~~l~~~~ 156 (157)
T cd04164 143 EGLDELKEALLELA 156 (157)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999998765
No 54
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.76 E-value=9.2e-18 Score=158.63 Aligned_cols=159 Identities=19% Similarity=0.218 Sum_probs=114.4
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeeccee-eEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNL-GNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~-g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
+|+++|.+|||||||++++++.......+..|+..... ..+.+++ ..+.+|||||... +.......+..+
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~a 74 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQER-------FRSVTHAYYRDA 74 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHH-------HHHhhHHHccCC
Confidence 58999999999999999999876655555555433332 2355555 5788999999643 222223456779
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~IS 460 (494)
|++|+|+|+++ ..++..+..+...+..+.+ ...|+++|+||+|+.... +....+.+.+ +.+++++|
T Consensus 75 d~~i~v~D~~~-------~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~-~~~~~e~S 144 (191)
T cd04112 75 HALLLLYDITN-------KASFDNIRAWLTEIKEYAQ--EDVVIMLLGNKADMSGERVVKREDGERLAKEY-GVPFMETS 144 (191)
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHhCC--CCCcEEEEEEcccchhccccCHHHHHHHHHHc-CCeEEEEe
Confidence 99999999987 3556666777776665532 367999999999996321 2233444443 46899999
Q ss_pred cccCCCHHHHHHHHHHHhcccCC
Q 011082 461 AVLEEGVPELKVGLRMLVNGEKS 483 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~~~~ 483 (494)
|+++.|+++|+.+|.+.+.....
T Consensus 145 a~~~~~v~~l~~~l~~~~~~~~~ 167 (191)
T cd04112 145 AKTGLNVELAFTAVAKELKHRKY 167 (191)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999988876643
No 55
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.76 E-value=2.2e-17 Score=151.45 Aligned_cols=154 Identities=23% Similarity=0.227 Sum_probs=104.7
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCccccccee-ecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTT-LRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftT-l~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
+|+++|.+|||||||++++.+..... .+..+. .......+.+++ ..+.+|||||... +......++..+
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~ 73 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEP-QQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER-------FQTMHASYYHKA 73 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CcCCceeeEEEEEEEEECCEEEEEEEEeCCCchh-------hhhhhHHHhCCC
Confidence 58999999999999999998764321 121111 111112233443 5678999999754 222334567889
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH-HHHHHHHHcCCCCEEEEEccc
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE-VYEELERRVQGVPIYPVCAVL 463 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e-~~~~L~~~~~~~~ii~ISA~~ 463 (494)
|++|+|+|+++ ..+...+..++.++.... .+.|+++|+||+|+..... ....+.+.. +.+++++||++
T Consensus 74 d~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~Sa~~ 142 (161)
T cd04124 74 HACILVFDVTR-------KITYKNLSKWYEELREYR---PEIPCIVVANKIDLDPSVTQKKFNFAEKH-NLPLYYVSAAD 142 (161)
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHhC---CCCcEEEEEECccCchhHHHHHHHHHHHc-CCeEEEEeCCC
Confidence 99999999987 245566666766665432 3689999999999854321 112222322 56899999999
Q ss_pred CCCHHHHHHHHHHHhcc
Q 011082 464 EEGVPELKVGLRMLVNG 480 (494)
Q Consensus 464 g~gI~~L~~~I~~~l~~ 480 (494)
+.|++++++.+.+.+.+
T Consensus 143 ~~gv~~l~~~l~~~~~~ 159 (161)
T cd04124 143 GTNVVKLFQDAIKLAVS 159 (161)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999887654
No 56
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.76 E-value=3.1e-17 Score=149.91 Aligned_cols=155 Identities=18% Similarity=0.214 Sum_probs=107.5
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|++|||||||+++|.+... ...+..|+.+...-.+..++ ..+.++||||..+ +.......+..+|
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~-------~~~~~~~~~~~~~ 73 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF-VDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEE-------FSAMRDQYMRTGE 73 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CcccCCchhhhEEEEEEECCEEEEEEEEECCCccc-------chHHHHHHHhhCC
Confidence 689999999999999999997643 23344444333333444444 5678999999765 2222345577899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEEc
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~ISA 461 (494)
.+++|+|+++ ...++.+..+...+.... ...+.|+|+|+||+|+.... +....+.+.+ +.+++++||
T Consensus 74 ~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~-~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 144 (164)
T smart00173 74 GFLLVYSITD-------RQSFEEIKKFREQILRVK-DRDDVPIVLVGNKCDLESERVVSTEEGKELARQW-GCPFLETSA 144 (164)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccccceEcHHHHHHHHHHc-CCEEEEeec
Confidence 9999999987 244555555555544332 12368999999999986532 2223333433 478999999
Q ss_pred ccCCCHHHHHHHHHHHhc
Q 011082 462 VLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l~ 479 (494)
+++.|+++++++|.+.+.
T Consensus 145 ~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 145 KERVNVDEAFYDLVREIR 162 (164)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999987764
No 57
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.76 E-value=1.3e-17 Score=157.56 Aligned_cols=159 Identities=18% Similarity=0.179 Sum_probs=112.2
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|.+|||||||+++|+.... ...++.|+.+.....+.+++ ..+.+|||||..+ +......++..+|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~ad 72 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF-VETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEE-------YTALRDQWIREGE 72 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CccCCCchHhhEEEEEEECCEEEEEEEEECCCchh-------hHHHHHHHHHhCC
Confidence 488999999999999999986533 33455554444334455555 4578999999754 2222345678899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcc-cCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEE
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEG-LSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~-l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~IS 460 (494)
++|+|+|+++ ..+++.+..++..+...... ..+.|+|+|+||+|+.... .....+.+.+ +.+++++|
T Consensus 73 ~~ilv~d~~~-------~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~S 144 (190)
T cd04144 73 GFILVYSITS-------RSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRL-GCEFIEAS 144 (190)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHh-CCEEEEec
Confidence 9999999987 35667777777766554321 2468999999999996421 1122333333 46899999
Q ss_pred cccCCCHHHHHHHHHHHhcccC
Q 011082 461 AVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~~~ 482 (494)
|+++.|+++++++|.+.+....
T Consensus 145 Ak~~~~v~~l~~~l~~~l~~~~ 166 (190)
T cd04144 145 AKTNVNVERAFYTLVRALRQQR 166 (190)
T ss_pred CCCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999998776543
No 58
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.76 E-value=1e-17 Score=154.37 Aligned_cols=156 Identities=21% Similarity=0.238 Sum_probs=109.9
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+++|++|||||||++++++.+......+..+.+.....+.+++ ..+.++||||... +......+++.+
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~-------~~~~~~~~~~~a 76 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER-------FRTITTAYYRGA 76 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHH-------HHHHHHHHhCCC
Confidence 4799999999999999999998654322222222233334455555 5689999999754 222234567889
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++ ..++..+..+..++..+. ..+.|.++|+||+|+.+.. +....+.+.. +.+++++|
T Consensus 77 d~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S 146 (167)
T cd01867 77 MGIILVYDITD-------EKSFENIRNWMRNIEEHA--SEDVERMLVGNKCDMEEKRVVSKEEGEALADEY-GIKFLETS 146 (167)
T ss_pred CEEEEEEECcC-------HHHHHhHHHHHHHHHHhC--CCCCcEEEEEECcccccccCCCHHHHHHHHHHc-CCEEEEEe
Confidence 99999999986 355667777777666542 2468999999999997432 1222333333 46899999
Q ss_pred cccCCCHHHHHHHHHHHhc
Q 011082 461 AVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~ 479 (494)
|+++.|++++++.|.+.+.
T Consensus 147 a~~~~~v~~~~~~i~~~~~ 165 (167)
T cd01867 147 AKANINVEEAFFTLAKDIK 165 (167)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999988764
No 59
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.76 E-value=2.6e-17 Score=149.94 Aligned_cols=155 Identities=19% Similarity=0.231 Sum_probs=112.1
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|++|||||||+++|++........+..+.+.....+.+++ ..+.++|+||... +.......+..+|
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~~d 74 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQER-------FRSITSSYYRGAV 74 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHhCCCC
Confidence 689999999999999999998765444444444444555566665 5788999999643 1122234466799
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEEEc
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~ISA 461 (494)
++++|+|+++ ....+.+..++.++..+.. ...|+++|+||+|+... .+....+.+.. +.+++++||
T Consensus 75 ~~ilv~d~~~-------~~s~~~~~~~l~~~~~~~~--~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~e~Sa 144 (164)
T smart00175 75 GALLVYDITN-------RESFENLKNWLKELREYAD--PNVVIMLVGNKSDLEDQRQVSREEAEAFAEEH-GLPFFETSA 144 (164)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcccccCCCHHHHHHHHHHc-CCeEEEEeC
Confidence 9999999987 2455566666666655532 36899999999998652 12333344443 578999999
Q ss_pred ccCCCHHHHHHHHHHHhc
Q 011082 462 VLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l~ 479 (494)
.++.|++++++.|.+.+.
T Consensus 145 ~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 145 KTNTNVEEAFEELAREIL 162 (164)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999988764
No 60
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.76 E-value=4e-17 Score=149.10 Aligned_cols=158 Identities=23% Similarity=0.327 Sum_probs=113.3
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCCccccccch----hhHHHHH
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLG----HAFLRHI 381 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~----~~fl~~i 381 (494)
.+|+++|.+|+|||||+++|++... ...+++++|.......+..++..+.++||||+.+..+....+. ...+.++
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~ 82 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAI 82 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHH
Confidence 3699999999999999999998753 4566788888877777778888899999999876433222221 1234567
Q ss_pred HhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh--H---HHHHHHHHHcC---C
Q 011082 382 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--E---EVYEELERRVQ---G 453 (494)
Q Consensus 382 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~--~---e~~~~L~~~~~---~ 453 (494)
..+|++++|+|++++. .... ..+...+.. .+.|+++|+||+|+... . ...+.+++.++ .
T Consensus 83 ~~~d~vi~v~d~~~~~-------~~~~-~~~~~~~~~-----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 149 (174)
T cd01895 83 ERADVVLLVIDATEGI-------TEQD-LRIAGLILE-----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDY 149 (174)
T ss_pred hhcCeEEEEEeCCCCc-------chhH-HHHHHHHHh-----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccC
Confidence 7899999999988731 2222 122222211 36899999999999755 2 22344544442 4
Q ss_pred CCEEEEEcccCCCHHHHHHHHHHH
Q 011082 454 VPIYPVCAVLEEGVPELKVGLRML 477 (494)
Q Consensus 454 ~~ii~ISA~~g~gI~~L~~~I~~~ 477 (494)
.+++++||+++.|++++++.+.++
T Consensus 150 ~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 150 APIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred CceEEEeccCCCCHHHHHHHHHHh
Confidence 689999999999999999998765
No 61
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.76 E-value=1.2e-17 Score=151.91 Aligned_cols=152 Identities=19% Similarity=0.244 Sum_probs=100.4
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhcee
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 387 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~l 387 (494)
.|+++|.+|||||||+++|++.......+. +|.......+...+..+.++||||..+ +...+..++..+|++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~-~t~g~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~d~i 72 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIV-PTVGFNVESFEKGNLSFTAFDMSGQGK-------YRGLWEHYYKNIQGI 72 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceec-CccccceEEEEECCEEEEEEECCCCHh-------hHHHHHHHHccCCEE
Confidence 478999999999999999998643333332 233333334455667899999999864 222334567889999
Q ss_pred eEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhccc--CCCCEEEEEeCCCcCChHHHHHHHHHHc-------CCCCEEE
Q 011082 388 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGL--SDRPSLVVANKIDEDGAEEVYEELERRV-------QGVPIYP 458 (494)
Q Consensus 388 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l--~~~P~IlVlNKiDl~~~~e~~~~L~~~~-------~~~~ii~ 458 (494)
++|+|+++. ........++..+... ..+ .+.|+++|+||+|+...... ..+...+ ....+++
T Consensus 73 i~v~D~~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~p~iiv~NK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~ 143 (162)
T cd04157 73 IFVIDSSDR-------LRLVVVKDELELLLNH-PDIKHRRVPILFFANKMDLPDALTA-VKITQLLGLENIKDKPWHIFA 143 (162)
T ss_pred EEEEeCCcH-------HHHHHHHHHHHHHHcC-cccccCCCCEEEEEeCccccCCCCH-HHHHHHhCCccccCceEEEEE
Confidence 999999872 3333333333333221 112 36899999999999754211 1121111 1235899
Q ss_pred EEcccCCCHHHHHHHHHH
Q 011082 459 VCAVLEEGVPELKVGLRM 476 (494)
Q Consensus 459 ISA~~g~gI~~L~~~I~~ 476 (494)
+||+++.|+++++++|.+
T Consensus 144 ~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 144 SNALTGEGLDEGVQWLQA 161 (162)
T ss_pred eeCCCCCchHHHHHHHhc
Confidence 999999999999999864
No 62
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.75 E-value=3.5e-17 Score=155.88 Aligned_cols=160 Identities=14% Similarity=0.121 Sum_probs=111.1
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeec-C--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD-D--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~-~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
+|+++|.+|||||||+++|++........+....+.....+.++ + ..+.+|||||... +......++..+
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~~~a 74 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQER-------FGGMTRVYYRGA 74 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchh-------hhhhHHHHhCCC
Confidence 68999999999999999999764322222222223334455555 3 5689999999854 222334567889
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhc--ccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQE--GLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYP 458 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~--~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~ 458 (494)
+++++|+|+++ ..+++.+..+..++..... .....|+|+|+||+|+... .+....+.+......+++
T Consensus 75 ~~~ilv~D~t~-------~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e 147 (201)
T cd04107 75 VGAIIVFDVTR-------PSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFE 147 (201)
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEE
Confidence 99999999987 3566677666666654321 1246899999999999631 223344444443357999
Q ss_pred EEcccCCCHHHHHHHHHHHhccc
Q 011082 459 VCAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 459 ISA~~g~gI~~L~~~I~~~l~~~ 481 (494)
+||+++.|+++++++|.+.+...
T Consensus 148 ~Sak~~~~v~e~f~~l~~~l~~~ 170 (201)
T cd04107 148 TSAKEGINIEEAMRFLVKNILAN 170 (201)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999877553
No 63
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.75 E-value=1.6e-17 Score=152.65 Aligned_cols=157 Identities=17% Similarity=0.209 Sum_probs=109.4
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHH
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIE 382 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~ 382 (494)
...+|+++|++|||||||+++|++........+..+.+.....+.+.+ ..+.++|+||... +.......+.
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~ 78 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER-------FRSITQSYYR 78 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHhc
Confidence 446899999999999999999986543323333333444555566666 4578899999754 2223345677
Q ss_pred hhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH----HHHHHHHHcCCCCEEE
Q 011082 383 RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE----VYEELERRVQGVPIYP 458 (494)
Q Consensus 383 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e----~~~~L~~~~~~~~ii~ 458 (494)
.+|++++|+|+++ ..+...+..+..++..+.. ...|.++|+||+|+....+ ..+.+.+.. ..++++
T Consensus 79 ~~d~~i~v~d~~~-------~~s~~~~~~~~~~l~~~~~--~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~-~~~~~~ 148 (169)
T cd04114 79 SANALILTYDITC-------EESFRCLPEWLREIEQYAN--NKVITILVGNKIDLAERREVSQQRAEEFSDAQ-DMYYLE 148 (169)
T ss_pred CCCEEEEEEECcC-------HHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccccCHHHHHHHHHHc-CCeEEE
Confidence 8999999999886 2344555566665554422 2578999999999875432 233343333 467999
Q ss_pred EEcccCCCHHHHHHHHHHHh
Q 011082 459 VCAVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 459 ISA~~g~gI~~L~~~I~~~l 478 (494)
+||+++.|++++++.|.+.+
T Consensus 149 ~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 149 TSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred eeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999998753
No 64
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.75 E-value=1.7e-17 Score=153.59 Aligned_cols=157 Identities=23% Similarity=0.199 Sum_probs=108.4
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhcee
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 387 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~l 387 (494)
+|+++|.+|||||||+++|++... .. ..+|.......+.+.+..+.++||||..+ +...+..++..+|++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~-~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~-------~~~~~~~~~~~ad~i 70 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQ-PIPTIGFNVETVEYKNLKFTIWDVGGKHK-------LRPLWKHYYLNTQAV 70 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CC-cCCcCceeEEEEEECCEEEEEEECCCChh-------cchHHHHHhccCCEE
Confidence 478999999999999999998632 22 34455555556677778899999999854 223345667889999
Q ss_pred eEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH--HHHHHHHHHcC-----CCCEEEEE
Q 011082 388 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE--EVYEELERRVQ-----GVPIYPVC 460 (494)
Q Consensus 388 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~--e~~~~L~~~~~-----~~~ii~IS 460 (494)
++|+|+++ ...+.....++.++... ..+.+.|+++|+||+|+.... +....+..... ...++++|
T Consensus 71 i~V~D~s~-------~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 142 (169)
T cd04158 71 VFVVDSSH-------RDRVSEAHSELAKLLTE-KELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCD 142 (169)
T ss_pred EEEEeCCc-------HHHHHHHHHHHHHHhcC-hhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCc
Confidence 99999987 23455555544444321 123458999999999996431 11222212111 12577899
Q ss_pred cccCCCHHHHHHHHHHHhcccC
Q 011082 461 AVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~~~ 482 (494)
|+++.||++++++|.+.+.+..
T Consensus 143 a~~g~gv~~~f~~l~~~~~~~~ 164 (169)
T cd04158 143 ARSGMGLYEGLDWLSRQLVAAG 164 (169)
T ss_pred CCCCCCHHHHHHHHHHHHhhcc
Confidence 9999999999999988766554
No 65
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.75 E-value=1.1e-17 Score=166.24 Aligned_cols=90 Identities=37% Similarity=0.674 Sum_probs=84.0
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC-----------------cceEEecCCCccCCccc
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD-----------------IQITVADIPGLIKGAHE 369 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~-----------------~~~~l~DtPGli~~a~~ 369 (494)
..+||||.||+|||||+|+||+.....++|||+|++|..+.+.+.+ ..+.+.|+.|+..+||.
T Consensus 21 lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~ 100 (391)
T KOG1491|consen 21 LKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASA 100 (391)
T ss_pred ceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCccc
Confidence 4799999999999999999999988899999999999999998776 24799999999999999
Q ss_pred cccchhhHHHHHHhhceeeEEEecCCC
Q 011082 370 NRGLGHAFLRHIERTKVLAYVVDLASG 396 (494)
Q Consensus 370 ~~~L~~~fl~~i~~ad~ll~VvD~s~~ 396 (494)
+.||+..||+|++.+|.|++|+++...
T Consensus 101 G~GLGN~FLs~iR~vDaifhVVr~f~d 127 (391)
T KOG1491|consen 101 GEGLGNKFLSHIRHVDAIFHVVRAFED 127 (391)
T ss_pred CcCchHHHHHhhhhccceeEEEEecCc
Confidence 999999999999999999999998764
No 66
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.75 E-value=2.9e-17 Score=151.07 Aligned_cols=154 Identities=18% Similarity=0.146 Sum_probs=103.2
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|.+|+|||||++++++.... ..+..|+-......+..+. ..+.++||||..+. ......++..++
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~~~~ 74 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQF-------PAMQRLSISKGH 74 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCcCCcchheEEEEEEECCEEEEEEEEECCCCCcc-------hHHHHHHhhcCC
Confidence 6899999999999999999976432 2222222111222223333 56889999998652 122234567899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhc-ccCCCCEEEEEeCCCcCChHH----HHHHHHHHcCCCCEEEEE
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQE-GLSDRPSLVVANKIDEDGAEE----VYEELERRVQGVPIYPVC 460 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~-~l~~~P~IlVlNKiDl~~~~e----~~~~L~~~~~~~~ii~IS 460 (494)
++|+|+|+++ ..+...+..++..+..+.. ...+.|+++|+||+|+....+ ....+... ...+++++|
T Consensus 75 ~~ilv~d~~~-------~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~e~S 146 (165)
T cd04140 75 AFILVYSVTS-------KQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATE-WNCAFMETS 146 (165)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHH-hCCcEEEee
Confidence 9999999987 3556666666655554321 224689999999999965221 11222222 246799999
Q ss_pred cccCCCHHHHHHHHHHH
Q 011082 461 AVLEEGVPELKVGLRML 477 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~ 477 (494)
|++++|+++++++|.++
T Consensus 147 A~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 147 AKTNHNVQELFQELLNL 163 (165)
T ss_pred cCCCCCHHHHHHHHHhc
Confidence 99999999999999764
No 67
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.75 E-value=2.3e-17 Score=151.76 Aligned_cols=155 Identities=14% Similarity=0.146 Sum_probs=108.3
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceee-cceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTL-RPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl-~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
.+|+++|++|+|||||++++++... ...++.|+- +...-.+.+++ ..+.+|||||..+ +......+++.
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~ 74 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKF-MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER-------FRAVTRSYYRG 74 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHhcC
Confidence 3689999999999999999997632 333433321 11122344554 5679999999754 22334456788
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEE
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPV 459 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~I 459 (494)
+|++|+|+|+++ ..++..+..++.++..+. ....|+++|+||+|+.... +....+.+.. +.+++++
T Consensus 75 ~~~~ilv~d~~~-------~~s~~~~~~~~~~~~~~~--~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~e~ 144 (166)
T cd04122 75 AAGALMVYDITR-------RSTYNHLSSWLTDARNLT--NPNTVIFLIGNKADLEAQRDVTYEEAKQFADEN-GLLFLEC 144 (166)
T ss_pred CCEEEEEEECCC-------HHHHHHHHHHHHHHHHhC--CCCCeEEEEEECcccccccCcCHHHHHHHHHHc-CCEEEEE
Confidence 999999999987 356667777766665432 2357999999999996542 2223333333 5689999
Q ss_pred EcccCCCHHHHHHHHHHHhc
Q 011082 460 CAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~ 479 (494)
||++++|+++++..+...+.
T Consensus 145 Sa~~~~~i~e~f~~l~~~~~ 164 (166)
T cd04122 145 SAKTGENVEDAFLETAKKIY 164 (166)
T ss_pred ECCCCCCHHHHHHHHHHHHh
Confidence 99999999999998887653
No 68
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.75 E-value=5e-17 Score=155.60 Aligned_cols=156 Identities=16% Similarity=0.202 Sum_probs=112.7
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccce-eecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFT-TLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ft-Tl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.|.++|..|+|||||++++..... ...|..| +.+.....+.+++ ..+.+|||+|... +...+..+++.+
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f-~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~-------~~~l~~~y~~~a 73 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTF-CEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQER-------FNSITSAYYRSA 73 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC-CCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchh-------hHHHHHHHhcCC
Confidence 478999999999999999987543 2333322 2333444566666 6789999999865 222334567899
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH----HHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE----VYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e----~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++ ..+++.+..|...+..+. ..+.|+|+|+||+|+....+ ..+.+.+...+..++++|
T Consensus 74 d~iIlVfDvtd-------~~Sf~~l~~w~~~i~~~~--~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etS 144 (202)
T cd04120 74 KGIILVYDITK-------KETFDDLPKWMKMIDKYA--SEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEAS 144 (202)
T ss_pred CEEEEEEECcC-------HHHHHHHHHHHHHHHHhC--CCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEec
Confidence 99999999998 467777777777665542 24689999999999964322 222333333356799999
Q ss_pred cccCCCHHHHHHHHHHHhcc
Q 011082 461 AVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~ 480 (494)
|++|.||++++++|.+.+..
T Consensus 145 Aktg~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 145 AKDNFNVDEIFLKLVDDILK 164 (202)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887644
No 69
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.74 E-value=2.2e-17 Score=153.59 Aligned_cols=152 Identities=26% Similarity=0.305 Sum_probs=106.1
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhce
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 386 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ 386 (494)
.+|+++|++|+|||||+++|+..... . ..+|+......+.+++..+.++||||... +...+..+++.+|+
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~~d~ 85 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVV-H--TSPTIGSNVEEIVYKNIRFLMWDIGGQES-------LRSSWNTYYTNTDA 85 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCC-C--cCCccccceEEEEECCeEEEEEECCCCHH-------HHHHHHHHhhcCCE
Confidence 47999999999999999999865432 1 23455556667777788999999999854 33445567889999
Q ss_pred eeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh---HHHHHHHHHH---cCCCCEEEEE
Q 011082 387 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERR---VQGVPIYPVC 460 (494)
Q Consensus 387 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~---~e~~~~L~~~---~~~~~ii~IS 460 (494)
+++|+|+++. ..+......+.++... ..+.+.|+++|+||+|+... +++.+.+... ....+++++|
T Consensus 86 vi~V~D~s~~-------~~~~~~~~~l~~~~~~-~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~S 157 (174)
T cd04153 86 VILVIDSTDR-------ERLPLTKEELYKMLAH-EDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCC 157 (174)
T ss_pred EEEEEECCCH-------HHHHHHHHHHHHHHhc-hhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecc
Confidence 9999999862 2333333333333221 22456899999999998753 2333333210 0234689999
Q ss_pred cccCCCHHHHHHHHHH
Q 011082 461 AVLEEGVPELKVGLRM 476 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~ 476 (494)
|++++|+++++++|..
T Consensus 158 A~~g~gi~e~~~~l~~ 173 (174)
T cd04153 158 ALTGEGLPEGLDWIAS 173 (174)
T ss_pred cCCCCCHHHHHHHHhc
Confidence 9999999999999864
No 70
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.2e-17 Score=179.96 Aligned_cols=158 Identities=28% Similarity=0.453 Sum_probs=124.6
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCc--cccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGA--HENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a--~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|.||+|||||+|+|||.+.+++|+|+.|.+-..|.+.+.+..+.++|+||.+.-. ++.......|+. -+..|
T Consensus 5 ~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll-~~~~D 83 (653)
T COG0370 5 TVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLL-EGKPD 83 (653)
T ss_pred eEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHh-cCCCC
Confidence 599999999999999999999999999999999999999999999999999999998621 222222223322 14569
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH---HHHHHHHHHcCCCCEEEEEcc
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYPVCAV 462 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~---e~~~~L~~~~~~~~ii~ISA~ 462 (494)
+++.|+|+++ .+.--.+..+|..+ +.|+|+++|++|..... -..+.|.+.+ +.|++++||+
T Consensus 84 ~ivnVvDAtn----------LeRnLyltlQLlE~-----g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~L-GvPVv~tvA~ 147 (653)
T COG0370 84 LIVNVVDATN----------LERNLYLTLQLLEL-----GIPMILALNMIDEAKKRGIRIDIEKLSKLL-GVPVVPTVAK 147 (653)
T ss_pred EEEEEcccch----------HHHHHHHHHHHHHc-----CCCeEEEeccHhhHHhcCCcccHHHHHHHh-CCCEEEEEee
Confidence 9999999986 23323333444443 78999999999987542 2345677766 7899999999
Q ss_pred cCCCHHHHHHHHHHHhcccC
Q 011082 463 LEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 463 ~g~gI~~L~~~I~~~l~~~~ 482 (494)
+|+|++++++.+.+..++..
T Consensus 148 ~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 148 RGEGLEELKRAIIELAESKT 167 (653)
T ss_pred cCCCHHHHHHHHHHhccccc
Confidence 99999999999998776655
No 71
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.74 E-value=5.8e-17 Score=153.57 Aligned_cols=156 Identities=17% Similarity=0.264 Sum_probs=113.6
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccc-eeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSF-TTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~f-tTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
.+|+++|..|||||||+.++...... ..|.. .+.+...-.+.+++ ..+.+|||+|... +...+..++..
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~-------~~~l~~~~~~~ 78 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGSTE-SPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGR-------FCTIFRSYSRG 78 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHH-------HHHHHHHHhcC
Confidence 47999999999999999999875321 22221 12222333455565 6788999999854 22233456789
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEE
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPV 459 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~I 459 (494)
+|++|+|+|+++ ..+++.+..|+.++..+. .+.|+|||+||+|+... .+..+.+.+.. +.+++++
T Consensus 79 ad~illVfD~t~-------~~Sf~~~~~w~~~i~~~~---~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~-~~~~~e~ 147 (189)
T cd04121 79 AQGIILVYDITN-------RWSFDGIDRWIKEIDEHA---PGVPKILVGNRLHLAFKRQVATEQAQAYAERN-GMTFFEV 147 (189)
T ss_pred CCEEEEEEECcC-------HHHHHHHHHHHHHHHHhC---CCCCEEEEEECccchhccCCCHHHHHHHHHHc-CCEEEEe
Confidence 999999999998 467888888888886654 36899999999999642 22333444443 5789999
Q ss_pred EcccCCCHHHHHHHHHHHhccc
Q 011082 460 CAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~~ 481 (494)
||+++.||++++++|.+.+...
T Consensus 148 SAk~g~~V~~~F~~l~~~i~~~ 169 (189)
T cd04121 148 SPLCNFNITESFTELARIVLMR 169 (189)
T ss_pred cCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999766543
No 72
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.74 E-value=2.6e-17 Score=176.85 Aligned_cols=163 Identities=22% Similarity=0.238 Sum_probs=117.3
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCCccc-cccchhhHHHHH
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE-NRGLGHAFLRHI 381 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~-~~~L~~~fl~~i 381 (494)
..+++|+|||.+|||||||+|+|++... .+.+.+++|.+...+.+.+++..+.++||||+...... ...+......++
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 3457899999999999999999998754 45778888988888888888889999999998642211 011222334567
Q ss_pred HhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHHcCCCCEEEEEc
Q 011082 382 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 382 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~~~~~ii~ISA 461 (494)
..||++|+|+|+++. .+.. ...+...+.. .++|+|+|+||+|+.........+.. +.-...++|||
T Consensus 116 ~~aD~il~VvD~~~~-------~s~~-~~~i~~~l~~-----~~~piilV~NK~Dl~~~~~~~~~~~~-~g~~~~~~iSA 181 (472)
T PRK03003 116 RTADAVLFVVDATVG-------ATAT-DEAVARVLRR-----SGKPVILAANKVDDERGEADAAALWS-LGLGEPHPVSA 181 (472)
T ss_pred HhCCEEEEEEECCCC-------CCHH-HHHHHHHHHH-----cCCCEEEEEECccCCccchhhHHHHh-cCCCCeEEEEc
Confidence 899999999999873 1221 2334344432 37899999999998754322222222 12224689999
Q ss_pred ccCCCHHHHHHHHHHHhcc
Q 011082 462 VLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l~~ 480 (494)
++|.|+++|+++|...+.+
T Consensus 182 ~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 182 LHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCCCCcHHHHHHHHhhccc
Confidence 9999999999999988865
No 73
>PRK04213 GTP-binding protein; Provisional
Probab=99.74 E-value=9.3e-17 Score=152.54 Aligned_cols=168 Identities=24% Similarity=0.329 Sum_probs=107.3
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccC--Cccc--cccchhh---HH-
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIK--GAHE--NRGLGHA---FL- 378 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~--~a~~--~~~L~~~---fl- 378 (494)
.+|+++|.+|||||||+|+|++.....+..+++|..+.. +.+. .+.+|||||+.. +.+. ...+... ++
T Consensus 10 ~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T PRK04213 10 PEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNH--YDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIE 85 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceE--Eeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHHH
Confidence 579999999999999999999987767778888876553 3333 689999999632 1110 0111111 11
Q ss_pred HHHHhhceeeEEEecCCCCCCCCC---CCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH-HHHHHHHHHcCC-
Q 011082 379 RHIERTKVLAYVVDLASGLDGRKG---IKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE-EVYEELERRVQG- 453 (494)
Q Consensus 379 ~~i~~ad~ll~VvD~s~~~~~~~~---~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~-e~~~~L~~~~~~- 453 (494)
..+..++++++|+|.+........ .........+...+.. .+.|.++|+||+|+.... +..+.+.+.+.-
T Consensus 86 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 160 (201)
T PRK04213 86 DNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLY 160 (201)
T ss_pred hhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECccccCcHHHHHHHHHHHhcCC
Confidence 234556899999998652110000 0011111222222221 368999999999997543 334455554421
Q ss_pred -------CCEEEEEcccCCCHHHHHHHHHHHhcccCCc
Q 011082 454 -------VPIYPVCAVLEEGVPELKVGLRMLVNGEKSE 484 (494)
Q Consensus 454 -------~~ii~ISA~~g~gI~~L~~~I~~~l~~~~~~ 484 (494)
.+++++||+++ |+++++++|.+.+.+..++
T Consensus 161 ~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~~ 197 (201)
T PRK04213 161 PPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKRD 197 (201)
T ss_pred ccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcccc
Confidence 25899999999 9999999999988765543
No 74
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.74 E-value=2.6e-17 Score=154.75 Aligned_cols=154 Identities=23% Similarity=0.340 Sum_probs=108.2
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhce
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 386 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ 386 (494)
.+|+|+|++|||||||+++|++.... ...+|..+..+.+.+++..+.++||||... ....+..++..+|.
T Consensus 20 ~ki~ilG~~~~GKStLi~~l~~~~~~---~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~ad~ 89 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLKDDRLA---QHVPTLHPTSEELTIGNIKFKTFDLGGHEQ-------ARRLWKDYFPEVDG 89 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc---ccCCccCcceEEEEECCEEEEEEECCCCHH-------HHHHHHHHhccCCE
Confidence 47899999999999999999986542 223467778888888888999999999743 12234556788999
Q ss_pred eeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh---HHHHHHHHHH-------------
Q 011082 387 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERR------------- 450 (494)
Q Consensus 387 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~---~e~~~~L~~~------------- 450 (494)
+++|+|+++. .........+.++... ....+.|+++|+||+|+... ++..+.+...
T Consensus 90 iilV~D~~~~-------~s~~~~~~~~~~i~~~-~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (190)
T cd00879 90 IVFLVDAADP-------ERFQESKEELDSLLSD-EELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVS 161 (190)
T ss_pred EEEEEECCcH-------HHHHHHHHHHHHHHcC-ccccCCCEEEEEeCCCCCCCcCHHHHHHHhCccccccccccccccc
Confidence 9999999862 3333333444443322 12356899999999998642 2322222110
Q ss_pred c-CCCCEEEEEcccCCCHHHHHHHHHHHh
Q 011082 451 V-QGVPIYPVCAVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 451 ~-~~~~ii~ISA~~g~gI~~L~~~I~~~l 478 (494)
. ....++++||++++|+++++++|.+.+
T Consensus 162 ~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 162 GIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred CceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 0 123589999999999999999998653
No 75
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.74 E-value=2.2e-17 Score=155.35 Aligned_cols=153 Identities=22% Similarity=0.277 Sum_probs=108.3
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhce
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 386 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ 386 (494)
.+|+++|.+|||||||+++|++.... .+ .+|..++...+.+.+..+.++||||... ....+..++..+|+
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~~~ad~ 87 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKNDRLA--QH-QPTQHPTSEELAIGNIKFTTFDLGGHQQ-------ARRLWKDYFPEVNG 87 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--cc-CCccccceEEEEECCEEEEEEECCCCHH-------HHHHHHHHhCCCCE
Confidence 57999999999999999999986432 22 3466777777888888999999999854 22334566789999
Q ss_pred eeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCC---hHHHHHHHHHH----------cCC
Q 011082 387 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDG---AEEVYEELERR----------VQG 453 (494)
Q Consensus 387 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~---~~e~~~~L~~~----------~~~ 453 (494)
+++|+|+++. .........+.++... ..+.+.|+++|+||+|+.. .+++.+.+.-. ...
T Consensus 88 ii~vvD~~~~-------~~~~~~~~~l~~l~~~-~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~ 159 (184)
T smart00178 88 IVYLVDAYDK-------ERFAESKRELDALLSD-EELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRP 159 (184)
T ss_pred EEEEEECCcH-------HHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCce
Confidence 9999999872 3344444333333221 2345789999999999863 23333332100 013
Q ss_pred CCEEEEEcccCCCHHHHHHHHHHH
Q 011082 454 VPIYPVCAVLEEGVPELKVGLRML 477 (494)
Q Consensus 454 ~~ii~ISA~~g~gI~~L~~~I~~~ 477 (494)
..++++||++++|+++++++|...
T Consensus 160 ~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 160 LEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred eEEEEeecccCCChHHHHHHHHhh
Confidence 459999999999999999999753
No 76
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.74 E-value=6.1e-17 Score=171.76 Aligned_cols=162 Identities=22% Similarity=0.279 Sum_probs=119.5
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCCccccccch----hhHHHH
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLG----HAFLRH 380 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~----~~fl~~ 380 (494)
..+|+++|.+|+|||||+|+|++... .+.++++||.++....+.+++..+.++||||+.+.......+. ...+.+
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~ 251 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKA 251 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHH
Confidence 35799999999999999999998754 4678899999998888888888999999999976443221111 122467
Q ss_pred HHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcC-ChH---HHHHHHHHHc---CC
Q 011082 381 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDED-GAE---EVYEELERRV---QG 453 (494)
Q Consensus 381 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~-~~~---e~~~~L~~~~---~~ 453 (494)
+..+|++|+|+|+++. ..... ..++..+.. ..+|.|+|+||+|+. ..+ +..+.+...+ ..
T Consensus 252 ~~~ad~~ilV~D~~~~-------~~~~~-~~~~~~~~~-----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 318 (429)
T TIGR03594 252 IERADVVLLVLDATEG-------ITEQD-LRIAGLILE-----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDF 318 (429)
T ss_pred HHhCCEEEEEEECCCC-------ccHHH-HHHHHHHHH-----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCC
Confidence 8899999999999873 22222 233333322 268999999999997 322 2333444443 35
Q ss_pred CCEEEEEcccCCCHHHHHHHHHHHhcc
Q 011082 454 VPIYPVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 454 ~~ii~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
.+++++||++|.|++++++.+......
T Consensus 319 ~~vi~~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 319 APIVFISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred CceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999887654
No 77
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.74 E-value=2.3e-17 Score=150.45 Aligned_cols=151 Identities=23% Similarity=0.279 Sum_probs=100.7
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhcee
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 387 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~l 387 (494)
+|+|+|++|+|||||+++|+..... .+ .+|+......+.+.+..+.++||||... +...+..++..+|++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~~~i 70 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV--TT-IPTIGFNVETVTYKNLKFQVWDLGGQTS-------IRPYWRCYYSNTDAI 70 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc--Cc-CCccCcCeEEEEECCEEEEEEECCCCHH-------HHHHHHHHhcCCCEE
Confidence 4899999999999999999765332 22 2344445556666678899999999854 223345667899999
Q ss_pred eEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH---HHHHHHHHHc---CCCCEEEEEc
Q 011082 388 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRV---QGVPIYPVCA 461 (494)
Q Consensus 388 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~---e~~~~L~~~~---~~~~ii~ISA 461 (494)
|+|+|+++. .........+..+... ..+.+.|+++|+||+|+.... +..+.+.... .+.++++|||
T Consensus 71 i~v~d~~~~-------~~~~~~~~~~~~~~~~-~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 142 (158)
T cd04151 71 IYVVDSTDR-------DRLGTAKEELHAMLEE-EELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSA 142 (158)
T ss_pred EEEEECCCH-------HHHHHHHHHHHHHHhc-hhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeec
Confidence 999998862 2222222222222110 123478999999999997532 2222221110 1246999999
Q ss_pred ccCCCHHHHHHHHHH
Q 011082 462 VLEEGVPELKVGLRM 476 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~ 476 (494)
+++.|+++++++|.+
T Consensus 143 ~~~~gi~~l~~~l~~ 157 (158)
T cd04151 143 IKGEGLDEGMDWLVN 157 (158)
T ss_pred cCCCCHHHHHHHHhc
Confidence 999999999999864
No 78
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.74 E-value=3.8e-17 Score=148.91 Aligned_cols=154 Identities=19% Similarity=0.191 Sum_probs=106.0
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|++|||||||+++|++........+..+.+.....+.+++ ..+.++||||.... .......++.+|
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~~d 74 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERF-------RTLTSSYYRGAQ 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhh-------hhhhHHHhCCCC
Confidence 689999999999999999998754332223222222333344444 57899999997542 112234467899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH---HHHHHHHHHcCCCCEEEEEcc
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYPVCAV 462 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~---e~~~~L~~~~~~~~ii~ISA~ 462 (494)
++++|+|+++ ...+..+..+...+..+.. ..+.|.++|+||+|+.... +....+.... +.+++++||+
T Consensus 75 ~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~ 145 (161)
T cd01863 75 GVILVYDVTR-------RDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKENREVTREEGLKFARKH-NMLFIETSAK 145 (161)
T ss_pred EEEEEEECCC-------HHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCcccccccCHHHHHHHHHHc-CCEEEEEecC
Confidence 9999999887 2445566666666655532 2468999999999997332 2222333333 6789999999
Q ss_pred cCCCHHHHHHHHHHH
Q 011082 463 LEEGVPELKVGLRML 477 (494)
Q Consensus 463 ~g~gI~~L~~~I~~~ 477 (494)
+++|++++++.+.+.
T Consensus 146 ~~~gi~~~~~~~~~~ 160 (161)
T cd01863 146 TRDGVQQAFEELVEK 160 (161)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998764
No 79
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.74 E-value=3.2e-17 Score=149.81 Aligned_cols=153 Identities=16% Similarity=0.217 Sum_probs=106.9
Q ss_pred eeeeeCCCCCcHHHHHHHHHcC-CCCccccccee-ecceeeEEeec---CcceEEecCCCccCCccccccchhhHHHHHH
Q 011082 308 DVGLVGMPSAGKSTLLGAISRA-KPAVGHYSFTT-LRPNLGNMNFD---DIQITVADIPGLIKGAHENRGLGHAFLRHIE 382 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~-~~~i~~~~ftT-l~p~~g~v~~~---~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~ 382 (494)
+|+++|++|||||||+++|... .....+|..|+ .+...-.+.++ ...+.+|||||... +......++.
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~ 74 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL-------YSDMVSNYWE 74 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHH-------HHHHHHHHhC
Confidence 6899999999999999999864 23445555544 22222233332 26789999999643 1122345678
Q ss_pred hhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH----HHHHHHHHcCCCCEEE
Q 011082 383 RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE----VYEELERRVQGVPIYP 458 (494)
Q Consensus 383 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e----~~~~L~~~~~~~~ii~ 458 (494)
.+|++++|+|+++ ..++..+..+..++..+. .+.|.|+|+||+|+.+..+ ....+...+ +.++++
T Consensus 75 ~~d~ii~v~d~~~-------~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~ 143 (164)
T cd04101 75 SPSVFILVYDVSN-------KASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADKAEVTDAQAQAFAQAN-QLKFFK 143 (164)
T ss_pred CCCEEEEEEECcC-------HHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccCCCHHHHHHHHHHc-CCeEEE
Confidence 8999999999987 345566666766665543 3689999999999965421 122333332 467999
Q ss_pred EEcccCCCHHHHHHHHHHHh
Q 011082 459 VCAVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 459 ISA~~g~gI~~L~~~I~~~l 478 (494)
+||+++.|++++++.|.+.+
T Consensus 144 ~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 144 TSALRGVGYEEPFESLARAF 163 (164)
T ss_pred EeCCCCCChHHHHHHHHHHh
Confidence 99999999999999998764
No 80
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.74 E-value=3.1e-17 Score=149.65 Aligned_cols=153 Identities=14% Similarity=0.109 Sum_probs=107.2
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|++|||||||+++|.+........+..+.+.....+.+++ ..+.+|||||... +.......+..+|
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-------~~~~~~~~~~~~~ 74 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQER-------FRSVTRSYYRGAA 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHH-------HHHhHHHHhcCCC
Confidence 689999999999999999998754433333333333334445555 5688999999754 2222345567899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEEc
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~ISA 461 (494)
++++|+|+++ ......+..++.++..+. -.+.|+++|+||+|+.... +....+.... +.+++.+||
T Consensus 75 ~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 144 (161)
T cd04113 75 GALLVYDITN-------RTSFEALPTWLSDARALA--SPNIVVILVGNKSDLADQREVTFLEASRFAQEN-GLLFLETSA 144 (161)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhC--CCCCeEEEEEEchhcchhccCCHHHHHHHHHHc-CCEEEEEEC
Confidence 9999999987 245566666666654432 2368999999999996532 1222333333 478999999
Q ss_pred ccCCCHHHHHHHHHHH
Q 011082 462 VLEEGVPELKVGLRML 477 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~ 477 (494)
+++.|++++++++.+.
T Consensus 145 ~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 145 LTGENVEEAFLKCARS 160 (161)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999998764
No 81
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.74 E-value=8.8e-17 Score=146.23 Aligned_cols=155 Identities=19% Similarity=0.196 Sum_probs=107.9
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|++|||||||+++|+.... ..++..++.+.....+..++ ..+.++||||..+. .......+..++
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~~ 73 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDY-------AAIRDNYHRSGE 73 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCCcchhhEEEEEEECCEEEEEEEEECCChhhh-------hHHHHHHhhcCC
Confidence 689999999999999999997532 34555555444444445554 56899999997542 222234567789
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEEEc
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~ISA 461 (494)
.+++|+|+++ ..++.....+...+..... ..+.|+++|+||+|+... ......+.+.+ +.+++++||
T Consensus 74 ~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 144 (164)
T cd04139 74 GFLLVFSITD-------MESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLEDKRQVSSEEAANLARQW-GVPYVETSA 144 (164)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccccccccCHHHHHHHHHHh-CCeEEEeeC
Confidence 9999999876 2444555555555443321 247999999999999762 12222333333 468999999
Q ss_pred ccCCCHHHHHHHHHHHhc
Q 011082 462 VLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l~ 479 (494)
++++|++++++.|.+.+.
T Consensus 145 ~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 145 KTRQNVEKAFYDLVREIR 162 (164)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987764
No 82
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.74 E-value=7.2e-17 Score=145.91 Aligned_cols=158 Identities=28% Similarity=0.333 Sum_probs=108.8
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCC-cccccceeecceeeEEeecCcceEEecCCCccCCcccc-ccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN-RGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~-i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~-~~L~~~fl~~i~~ad 385 (494)
+|+++|.+|||||||+++|++.... +.+.+.+|.......+...+..+.++||||+....... ..+.......+..+|
T Consensus 5 ~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d 84 (168)
T cd04163 5 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVD 84 (168)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCC
Confidence 6999999999999999999987543 34445566555555555556789999999987643321 112223355678889
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCC-hHHH---HHHHHHHcCCCCEEEEEc
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDG-AEEV---YEELERRVQGVPIYPVCA 461 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~-~~e~---~~~L~~~~~~~~ii~ISA 461 (494)
++++|+|+++... .....+...+..+ +.|.++|+||+|+.. .... ...+....+..+++++|+
T Consensus 85 ~i~~v~d~~~~~~--------~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 151 (168)
T cd04163 85 LVLFVVDASEPIG--------EGDEFILELLKKS-----KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISA 151 (168)
T ss_pred EEEEEEECCCccC--------chHHHHHHHHHHh-----CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEe
Confidence 9999999987311 1122233333222 589999999999984 3322 233333334468999999
Q ss_pred ccCCCHHHHHHHHHHHh
Q 011082 462 VLEEGVPELKVGLRMLV 478 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l 478 (494)
+++.|++++++.|.+.+
T Consensus 152 ~~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 152 LKGENVDELLEEIVKYL 168 (168)
T ss_pred ccCCChHHHHHHHHhhC
Confidence 99999999999998653
No 83
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.74 E-value=3.2e-17 Score=150.44 Aligned_cols=151 Identities=26% Similarity=0.304 Sum_probs=102.1
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhcee
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 387 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~l 387 (494)
+|+++|.+|||||||++++...... .+ .+|+......+.+....+.+|||||..+ +...+..++..||++
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~--~~-~pt~g~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~ad~~ 71 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKNISFTVWDVGGQDK-------IRPLWRHYFQNTQGL 71 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc--cc-CCCCCcceEEEEECCEEEEEEECCCCHh-------HHHHHHHHhcCCCEE
Confidence 5899999999999999999654321 22 2334444445666678899999999854 223345567899999
Q ss_pred eEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh---HHHHHHHHHH-c--CCCCEEEEEc
Q 011082 388 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERR-V--QGVPIYPVCA 461 (494)
Q Consensus 388 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~---~e~~~~L~~~-~--~~~~ii~ISA 461 (494)
++|+|+++ ..++.....++.++... ..+...|+++|+||+|+... +++.+.+... . ....++++||
T Consensus 72 i~v~D~~~-------~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 143 (159)
T cd04150 72 IFVVDSND-------RERIGEAREELQRMLNE-DELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCA 143 (159)
T ss_pred EEEEeCCC-------HHHHHHHHHHHHHHHhc-HHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeC
Confidence 99999987 23455555444444321 22346899999999999643 2322222110 0 1234678999
Q ss_pred ccCCCHHHHHHHHHH
Q 011082 462 VLEEGVPELKVGLRM 476 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~ 476 (494)
++|.|+++++++|.+
T Consensus 144 k~g~gv~~~~~~l~~ 158 (159)
T cd04150 144 TSGDGLYEGLDWLSN 158 (159)
T ss_pred CCCCCHHHHHHHHhc
Confidence 999999999998853
No 84
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.74 E-value=7.2e-17 Score=146.29 Aligned_cols=154 Identities=21% Similarity=0.224 Sum_probs=106.0
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|++|+|||||+++|.+........+.++.......+.+.+ ..+.++||||...... .....+..+|
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~~~ 74 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA-------LGPIYYRDAD 74 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHH-------hhHHHhccCC
Confidence 689999999999999999998654332222222222334444444 4689999999654211 1122356789
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEEc
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~ISA 461 (494)
++++|+|+++ ..+......+..++..+... +.|+++|+||+|+.... +....+.+.. +.+++++||
T Consensus 75 ~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~ 144 (162)
T cd04123 75 GAILVYDITD-------ADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLERQRVVSKSEAEEYAKSV-GAKHFETSA 144 (162)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccccCCCHHHHHHHHHHc-CCEEEEEeC
Confidence 9999999987 34566666776777655332 68999999999987432 2222333333 567899999
Q ss_pred ccCCCHHHHHHHHHHHh
Q 011082 462 VLEEGVPELKVGLRMLV 478 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l 478 (494)
+++.|+++++++|.+.+
T Consensus 145 ~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 145 KTGKGIEELFLSLAKRM 161 (162)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998764
No 85
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.74 E-value=5.7e-17 Score=148.81 Aligned_cols=157 Identities=18% Similarity=0.253 Sum_probs=109.4
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|++|||||||++++.... ....|+.++.......+.+++ ..+.+|||||.... ........+..+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------~~~~~~~~~~~~d 73 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR-FIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQA------DTEQLERSIRWAD 73 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc-cccccCCChHHhceEEEEECCEEEEEEEEECCCCccc------ccchHHHHHHhCC
Confidence 48999999999999999987642 244555555334444455555 45789999998641 1112345678899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEEc
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~ISA 461 (494)
++++|+|+++ ..+++.+..+...+..+.....+.|+|+|+||+|+.... +....+.+.+ +.+++++||
T Consensus 74 ~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~Sa 145 (165)
T cd04146 74 GFVLVYSITD-------RSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASEL-GCLFFEVSA 145 (165)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHc-CCEEEEeCC
Confidence 9999999987 355666666666665543212378999999999985431 2223344443 468999999
Q ss_pred ccC-CCHHHHHHHHHHHhc
Q 011082 462 VLE-EGVPELKVGLRMLVN 479 (494)
Q Consensus 462 ~~g-~gI~~L~~~I~~~l~ 479 (494)
+++ .|+++++..|.+.+.
T Consensus 146 ~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 146 AEDYDGVHSVFHELCREVR 164 (165)
T ss_pred CCCchhHHHHHHHHHHHHh
Confidence 999 599999999987654
No 86
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.74 E-value=6.1e-17 Score=147.54 Aligned_cols=152 Identities=17% Similarity=0.166 Sum_probs=104.8
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeec--C--cceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD--D--IQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~--~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
+|+++|.+|+|||||++++++........+..+.+.....+.+. + ..+.+|||||..+ +......+++.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~ 74 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE-------FDAITKAYYRG 74 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHH-------HHHhHHHHhcC
Confidence 58999999999999999999864322111222222223334444 2 5789999999754 22223456788
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEE
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPV 459 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~I 459 (494)
+|++++|+|+++ ..++..+..+..++... ..+.|+|+|+||+|+.... +....+.+.+ +.+++++
T Consensus 75 ~~~~v~v~d~~~-------~~s~~~l~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~ 143 (162)
T cd04106 75 AQACILVFSTTD-------RESFEAIESWKEKVEAE---CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRL-QLPLFRT 143 (162)
T ss_pred CCEEEEEEECCC-------HHHHHHHHHHHHHHHHh---CCCCCEEEEEEChhcccccCCCHHHHHHHHHHc-CCeEEEE
Confidence 999999999987 34556666666555432 3478999999999986532 2233344443 5689999
Q ss_pred EcccCCCHHHHHHHHHHH
Q 011082 460 CAVLEEGVPELKVGLRML 477 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~ 477 (494)
||+++.|+++++++|...
T Consensus 144 Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 144 SVKDDFNVTELFEYLAEK 161 (162)
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 999999999999998754
No 87
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.74 E-value=8e-17 Score=173.07 Aligned_cols=162 Identities=22% Similarity=0.281 Sum_probs=119.8
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhH------H
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAF------L 378 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~f------l 378 (494)
..+|+|+|.||||||||+|+|++... .+.++++||.++....+.+++..+.++||||+.+..... .+..+ .
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~--~~~e~~~~~~~~ 288 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQA--SGHEYYASLRTH 288 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCcccccccc--chHHHHHHHHHH
Confidence 46899999999999999999998854 568899999999888888888889999999986532211 11222 2
Q ss_pred HHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH---HHHHHHHHc---C
Q 011082 379 RHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE---VYEELERRV---Q 452 (494)
Q Consensus 379 ~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e---~~~~L~~~~---~ 452 (494)
..++.+|++++|+|+++. ....... ++..+.. .++|+|+|+||+|+...+. ....+.+.+ .
T Consensus 289 ~~i~~ad~vilV~Da~~~-------~s~~~~~-~~~~~~~-----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~ 355 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEP-------ISEQDQR-VLSMVIE-----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVP 355 (472)
T ss_pred HHHhcCCEEEEEEeCCCC-------CCHHHHH-HHHHHHH-----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCC
Confidence 356789999999999873 2333332 3333322 3689999999999975422 223333333 3
Q ss_pred CCCEEEEEcccCCCHHHHHHHHHHHhcccC
Q 011082 453 GVPIYPVCAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 453 ~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
..+++++||++|.|++++++.|.+.+....
T Consensus 356 ~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~ 385 (472)
T PRK03003 356 WAPRVNISAKTGRAVDKLVPALETALESWD 385 (472)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 468999999999999999999998876543
No 88
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.73 E-value=1e-16 Score=147.28 Aligned_cols=160 Identities=15% Similarity=0.141 Sum_probs=106.0
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|++|||||||+++|++........+..+.+.....+.+++ ..+.++|+||... +.......++.+|
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d 74 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQER-------FQSLGVAFYRGAD 74 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHH-------HHhHHHHHhcCCC
Confidence 689999999999999999998743222111112223334455555 4567999999753 2222345677899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhc--ccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEE
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQE--GLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPV 459 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~--~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~I 459 (494)
++|+|+|+++. ........+..++..... ...+.|.++|+||+|+... .+..+.+.+.....+++++
T Consensus 75 ~~i~v~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (172)
T cd01862 75 CCVLVYDVTNP-------KSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFET 147 (172)
T ss_pred EEEEEEECCCH-------HHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEE
Confidence 99999998862 334444444444322211 1236899999999999731 2223334444444689999
Q ss_pred EcccCCCHHHHHHHHHHHhccc
Q 011082 460 CAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~~ 481 (494)
||+++.|++++++.|.+.+.+.
T Consensus 148 Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 148 SAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred ECCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999998876544
No 89
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.73 E-value=2.3e-17 Score=161.78 Aligned_cols=166 Identities=26% Similarity=0.295 Sum_probs=123.5
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCCcccc-ccchh----hHHHH
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN-RGLGH----AFLRH 380 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~-~~L~~----~fl~~ 380 (494)
-.|++||.||||||||.|.+.+.+. .++...-||.....|.+.-+..+++++||||++...+.. ..+.. .....
T Consensus 73 L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a 152 (379)
T KOG1423|consen 73 LYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDA 152 (379)
T ss_pred EEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHH
Confidence 3799999999999999999999977 467788899999999999999999999999999753321 11222 23456
Q ss_pred HHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHH---------------
Q 011082 381 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYE--------------- 445 (494)
Q Consensus 381 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~--------------- 445 (494)
+..||+++.|+|+++... ... -.++..|..| .+.|.|+|+||+|.......+-
T Consensus 153 ~q~AD~vvVv~Das~tr~----~l~----p~vl~~l~~y----s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~k 220 (379)
T KOG1423|consen 153 AQNADCVVVVVDASATRT----PLH----PRVLHMLEEY----SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLK 220 (379)
T ss_pred HhhCCEEEEEEeccCCcC----ccC----hHHHHHHHHH----hcCCceeeccchhcchhhhHHhhhHHhccccccchhh
Confidence 788999999999996321 111 1233445555 3689999999999876543221
Q ss_pred -HHHHHcCCC----------------CEEEEEcccCCCHHHHHHHHHHHhcccCCc
Q 011082 446 -ELERRVQGV----------------PIYPVCAVLEEGVPELKVGLRMLVNGEKSE 484 (494)
Q Consensus 446 -~L~~~~~~~----------------~ii~ISA~~g~gI~~L~~~I~~~l~~~~~~ 484 (494)
++++.+... .+|+|||++|+||++|.++|.......+++
T Consensus 221 l~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~ 276 (379)
T KOG1423|consen 221 LEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWK 276 (379)
T ss_pred hhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCC
Confidence 222222122 389999999999999999999888877665
No 90
>PTZ00369 Ras-like protein; Provisional
Probab=99.73 E-value=5e-17 Score=153.37 Aligned_cols=161 Identities=17% Similarity=0.172 Sum_probs=111.0
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+++|.+|||||||++++.+... ...+..|+-......+.+++ ..+.+|||||..+ +......++..+
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~l~~~~~~~~ 77 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHF-IDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEE-------YSAMRDQYMRTG 77 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCcc-------chhhHHHHhhcC
Confidence 4799999999999999999997533 22333332222233444555 4577899999865 222234567789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++ ..+++.+..+..++..+.. ..+.|+|+|+||+|+.... +....+.+.+ +.+++++|
T Consensus 78 d~iilv~D~s~-------~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~-~~~~~e~S 148 (189)
T PTZ00369 78 QGFLCVYSITS-------RSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLDSERQVSTGEGQELAKSF-GIPFLETS 148 (189)
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHHHHHHHHHHh-CCEEEEee
Confidence 99999999987 3556667776666654422 2367999999999986432 1122333333 46899999
Q ss_pred cccCCCHHHHHHHHHHHhcccCCc
Q 011082 461 AVLEEGVPELKVGLRMLVNGEKSE 484 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~~~~~ 484 (494)
|+++.||++++.+|.+.+.....+
T Consensus 149 ak~~~gi~~~~~~l~~~l~~~~~~ 172 (189)
T PTZ00369 149 AKQRVNVDEAFYELVREIRKYLKE 172 (189)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999998877655433
No 91
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.73 E-value=5.9e-17 Score=148.10 Aligned_cols=154 Identities=18% Similarity=0.177 Sum_probs=107.2
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|.+|+|||||++++...... ..+..|+.+.....+.+++ ..+.+|||||..+. ...+...+..+|
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~~ad 74 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFI-EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF-------ASMRDLYIKNGQ 74 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-CCCCCchhheEEEEEEECCEEEEEEEEECCCcccc-------cchHHHHHhhCC
Confidence 6899999999999999998875332 2233333233344555555 45778999997542 222334578899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEEc
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~ISA 461 (494)
++++|+|+++ ..++.....+..++.... ...+.|+++|+||+|+.... .....+.+.+ +.+++++||
T Consensus 75 ~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~-~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 145 (163)
T cd04176 75 GFIVVYSLVN-------QQTFQDIKPMRDQIVRVK-GYEKVPIILVGNKVDLESEREVSSAEGRALAEEW-GCPFMETSA 145 (163)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccchhcCccCHHHHHHHHHHh-CCEEEEecC
Confidence 9999999987 355666666666665432 22478999999999985422 1223333333 468899999
Q ss_pred ccCCCHHHHHHHHHHHh
Q 011082 462 VLEEGVPELKVGLRMLV 478 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l 478 (494)
+++.|+++++.++.+.+
T Consensus 146 ~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 146 KSKTMVNELFAEIVRQM 162 (163)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999998654
No 92
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.73 E-value=6.1e-17 Score=145.27 Aligned_cols=151 Identities=20% Similarity=0.265 Sum_probs=106.6
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|++|||||||+++|++........+.++.+.....+..++ ..+.++|+||... +.......+..+|
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~~d 74 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER-------FRSITPSYYRGAH 74 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHH-------HHHHHHHHhcCCC
Confidence 589999999999999999998866554444444444444444433 6789999999854 2223345567899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh-H---HHHHHHHHHcCCCCEEEEEc
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA-E---EVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~-~---e~~~~L~~~~~~~~ii~ISA 461 (494)
++++|+|+++ .........++..+..... ...|.++|+||+|+... . +....+... ...+++.+||
T Consensus 75 ~ii~v~d~~~-------~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa 144 (159)
T cd00154 75 GAILVYDITN-------RESFENLDKWLKELKEYAP--ENIPIILVGNKIDLEDQRQVSTEEAQQFAKE-NGLLFFETSA 144 (159)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhCC--CCCcEEEEEEcccccccccccHHHHHHHHHH-cCCeEEEEec
Confidence 9999999987 2445666666666554421 36899999999999622 1 222223332 3578999999
Q ss_pred ccCCCHHHHHHHHH
Q 011082 462 VLEEGVPELKVGLR 475 (494)
Q Consensus 462 ~~g~gI~~L~~~I~ 475 (494)
+++.|+++++++|.
T Consensus 145 ~~~~~i~~~~~~i~ 158 (159)
T cd00154 145 KTGENVEELFQSLA 158 (159)
T ss_pred CCCCCHHHHHHHHh
Confidence 99999999999875
No 93
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.73 E-value=3.3e-17 Score=151.98 Aligned_cols=151 Identities=27% Similarity=0.324 Sum_probs=102.2
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhce
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 386 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ 386 (494)
.+|+++|++|||||||+++|++... ..+. .|.......+.+++..+.++||||... +...+..++..+|+
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~~~~--~~~~-~t~g~~~~~~~~~~~~l~l~D~~G~~~-------~~~~~~~~~~~~d~ 84 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGEDI--DTIS-PTLGFQIKTLEYEGYKLNIWDVGGQKT-------LRPYWRNYFESTDA 84 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCC--CCcC-CccccceEEEEECCEEEEEEECCCCHH-------HHHHHHHHhCCCCE
Confidence 3689999999999999999997632 1221 222333445566678899999999754 22234456788999
Q ss_pred eeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh---HHHHHHHHHH---cCCCCEEEEE
Q 011082 387 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERR---VQGVPIYPVC 460 (494)
Q Consensus 387 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~---~e~~~~L~~~---~~~~~ii~IS 460 (494)
+++|+|+++. .++.....++.++... ....+.|+++|+||+|+... ++..+.+... ....+++++|
T Consensus 85 ~i~v~d~~~~-------~s~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (173)
T cd04154 85 LIWVVDSSDR-------LRLDDCKRELKELLQE-ERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCS 156 (173)
T ss_pred EEEEEECCCH-------HHHHHHHHHHHHHHhC-hhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEecc
Confidence 9999999872 3344444444443221 12357899999999999653 2222222111 1245799999
Q ss_pred cccCCCHHHHHHHHH
Q 011082 461 AVLEEGVPELKVGLR 475 (494)
Q Consensus 461 A~~g~gI~~L~~~I~ 475 (494)
|++|+|+++++++|.
T Consensus 157 a~~g~gi~~l~~~l~ 171 (173)
T cd04154 157 AVTGEGLLQGIDWLV 171 (173)
T ss_pred CCCCcCHHHHHHHHh
Confidence 999999999999875
No 94
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.73 E-value=5.6e-17 Score=145.75 Aligned_cols=152 Identities=23% Similarity=0.319 Sum_probs=101.8
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhcee
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 387 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~l 387 (494)
.|+|+|++|||||||+++|++........ .|.......+..++..+.++||||... +...+..++..+|++
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d~i 71 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTI--PTVGFNMRKVTKGNVTLKVWDLGGQPR-------FRSMWERYCRGVNAI 71 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCcc--CCCCcceEEEEECCEEEEEEECCCCHh-------HHHHHHHHHhcCCEE
Confidence 37999999999999999999874432222 233333444556667899999999754 223345667889999
Q ss_pred eEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHH----c--CCCCEEEEEc
Q 011082 388 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERR----V--QGVPIYPVCA 461 (494)
Q Consensus 388 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~----~--~~~~ii~ISA 461 (494)
++|+|+++. .........+.++... ..+.+.|.++|+||+|+.+.......+... . ...+++++||
T Consensus 72 i~v~d~~~~-------~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 143 (159)
T cd04159 72 VYVVDAADR-------TALEAAKNELHDLLEK-PSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISC 143 (159)
T ss_pred EEEEECCCH-------HHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEe
Confidence 999998862 2333333333333221 123478999999999987643221111111 1 2356899999
Q ss_pred ccCCCHHHHHHHHHH
Q 011082 462 VLEEGVPELKVGLRM 476 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~ 476 (494)
+++.|+++++++|.+
T Consensus 144 ~~~~gi~~l~~~l~~ 158 (159)
T cd04159 144 KEKTNIDIVLDWLIK 158 (159)
T ss_pred ccCCChHHHHHHHhh
Confidence 999999999999875
No 95
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.73 E-value=5.7e-17 Score=147.42 Aligned_cols=151 Identities=25% Similarity=0.309 Sum_probs=105.8
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhcee
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 387 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~l 387 (494)
+|+++|.+|||||||++++++..+ . ...+|.......+.+.+..+.+|||||... +...+...+..+|++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~--~-~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~~~~ 70 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV--V-TTIPTIGFNVETVEYKNVSFTVWDVGGQDK-------IRPLWKHYYENTNGI 70 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC--C-CCCCCcCcceEEEEECCEEEEEEECCCChh-------hHHHHHHHhccCCEE
Confidence 489999999999999999998752 1 223344455556677778899999999865 222344566789999
Q ss_pred eEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH---HHHHHHHHH---cCCCCEEEEEc
Q 011082 388 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERR---VQGVPIYPVCA 461 (494)
Q Consensus 388 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~---e~~~~L~~~---~~~~~ii~ISA 461 (494)
++|+|++.. ........++..+.... .....|+++|+||+|+.... +..+.+... ....+++++||
T Consensus 71 i~v~D~~~~-------~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 142 (158)
T cd00878 71 IFVVDSSDR-------ERIEEAKEELHKLLNEE-ELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSA 142 (158)
T ss_pred EEEEECCCH-------HHHHHHHHHHHHHHhCc-ccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeC
Confidence 999999872 33444444444333321 13478999999999997633 333333322 12357999999
Q ss_pred ccCCCHHHHHHHHHH
Q 011082 462 VLEEGVPELKVGLRM 476 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~ 476 (494)
+++.|+++++++|..
T Consensus 143 ~~~~gv~~~~~~l~~ 157 (158)
T cd00878 143 VTGDGLDEGLDWLLQ 157 (158)
T ss_pred CCCCCHHHHHHHHhh
Confidence 999999999998864
No 96
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.73 E-value=9.3e-17 Score=149.36 Aligned_cols=157 Identities=17% Similarity=0.214 Sum_probs=106.6
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeec------------CcceEEecCCCccCCccccccch
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD------------DIQITVADIPGLIKGAHENRGLG 374 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~------------~~~~~l~DtPGli~~a~~~~~L~ 374 (494)
.+|+++|.+|||||||++++++........+..+.+.....+.+. ...+.+|||||..+ +.
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~ 77 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQER-------FR 77 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHH-------HH
Confidence 368999999999999999998764322111111112222223322 15689999999754 22
Q ss_pred hhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHH
Q 011082 375 HAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERR 450 (494)
Q Consensus 375 ~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~ 450 (494)
......++.+|++++|+|+++ ..++..+..++.++..+.. ..+.|+++|+||+|+.+. .+....+.+.
T Consensus 78 ~~~~~~~~~~~~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~ 149 (180)
T cd04127 78 SLTTAFFRDAMGFLLIFDLTN-------EQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLEDQRQVSEEQAKALADK 149 (180)
T ss_pred HHHHHHhCCCCEEEEEEECCC-------HHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchhcCccCHHHHHHHHHH
Confidence 223445778999999999987 3566667777666654321 236789999999998643 1223444444
Q ss_pred cCCCCEEEEEcccCCCHHHHHHHHHHHhc
Q 011082 451 VQGVPIYPVCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 451 ~~~~~ii~ISA~~g~gI~~L~~~I~~~l~ 479 (494)
+ +.+++++||+++.|++++++.|.+.+.
T Consensus 150 ~-~~~~~e~Sak~~~~v~~l~~~l~~~~~ 177 (180)
T cd04127 150 Y-GIPYFETSAATGTNVEKAVERLLDLVM 177 (180)
T ss_pred c-CCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4 568999999999999999999987653
No 97
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.73 E-value=1.6e-16 Score=147.54 Aligned_cols=151 Identities=21% Similarity=0.247 Sum_probs=101.2
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCc------ccc---------cceeecceeeEEee---c--CcceEEecCCCccCCc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAV------GHY---------SFTTLRPNLGNMNF---D--DIQITVADIPGLIKGA 367 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i------~~~---------~ftTl~p~~g~v~~---~--~~~~~l~DtPGli~~a 367 (494)
.|++||.+|+|||||+++|++....+ ..+ ...|..+....+.+ + +..+.++||||+.+
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-- 79 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD-- 79 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh--
Confidence 68999999999999999998743211 111 12233333333333 2 35688999999865
Q ss_pred cccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh--HHHHH
Q 011082 368 HENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYE 445 (494)
Q Consensus 368 ~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~--~e~~~ 445 (494)
+...+..++..+|++|+|+|+++. .....+..+. .+.. .+.|.++|+||+|+... ....+
T Consensus 80 -----~~~~~~~~~~~ad~~i~v~D~~~~-------~~~~~~~~~~-~~~~-----~~~~iiiv~NK~Dl~~~~~~~~~~ 141 (179)
T cd01890 80 -----FSYEVSRSLAACEGALLLVDATQG-------VEAQTLANFY-LALE-----NNLEIIPVINKIDLPSADPERVKQ 141 (179)
T ss_pred -----hHHHHHHHHHhcCeEEEEEECCCC-------ccHhhHHHHH-HHHH-----cCCCEEEEEECCCCCcCCHHHHHH
Confidence 334455678899999999999863 1222233222 2211 36799999999998643 23344
Q ss_pred HHHHHcC--CCCEEEEEcccCCCHHHHHHHHHHHh
Q 011082 446 ELERRVQ--GVPIYPVCAVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 446 ~L~~~~~--~~~ii~ISA~~g~gI~~L~~~I~~~l 478 (494)
.+.+.+. ...++++||++|+|+++|+++|...+
T Consensus 142 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 142 QIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 5555542 23589999999999999999998765
No 98
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.73 E-value=8.1e-17 Score=153.32 Aligned_cols=156 Identities=17% Similarity=0.233 Sum_probs=108.4
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCccccc-ceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYS-FTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~-ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
.+|+++|++|||||||++.+.+.... ..|. ..+.+.....+.+++ ..+.+|||||... +......++..
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-------~~~~~~~~~~~ 78 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER-------FRTITSTYYRG 78 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCcCccccceeEEEEEEECCEEEEEEEEeCCCchh-------HHHHHHHHhCC
Confidence 47999999999999999999876432 1221 111222233444444 4688999999754 22334456778
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEE
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPV 459 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~I 459 (494)
++++++|+|+++ ..++..+..++..+.... ...|.++|+||+|+.... +....+.+.. +.+++++
T Consensus 79 a~~iilv~D~~~-------~~s~~~~~~~~~~i~~~~---~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~-~~~~~e~ 147 (199)
T cd04110 79 THGVIVVYDVTN-------GESFVNVKRWLQEIEQNC---DDVCKVLVGNKNDDPERKVVETEDAYKFAGQM-GISLFET 147 (199)
T ss_pred CcEEEEEEECCC-------HHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccccCHHHHHHHHHHc-CCEEEEE
Confidence 999999999987 355666666766665432 367999999999996532 2122233333 4789999
Q ss_pred EcccCCCHHHHHHHHHHHhccc
Q 011082 460 CAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~~ 481 (494)
||+++.||++++++|...+...
T Consensus 148 Sa~~~~gi~~lf~~l~~~~~~~ 169 (199)
T cd04110 148 SAKENINVEEMFNCITELVLRA 169 (199)
T ss_pred ECCCCcCHHHHHHHHHHHHHHh
Confidence 9999999999999998877553
No 99
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.73 E-value=5.4e-17 Score=150.44 Aligned_cols=152 Identities=25% Similarity=0.308 Sum_probs=101.2
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhce
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 386 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ 386 (494)
.+|+++|.+|||||||+++|+.... . .+. +|.......+...+..+.+|||||... +...+..++..+|+
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~~~~~-~-~~~-~t~g~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~a~~ 79 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKLGQS-V-TTI-PTVGFNVETVTYKNVKFNVWDVGGQDK-------IRPLWRHYYTGTQG 79 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHccCCC-c-ccc-CCcccceEEEEECCEEEEEEECCCCHH-------HHHHHHHHhccCCE
Confidence 3799999999999999999976432 1 221 233333345556668899999999854 22233456788999
Q ss_pred eeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh---HHHHHHHH--HHc-CCCCEEEEE
Q 011082 387 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELE--RRV-QGVPIYPVC 460 (494)
Q Consensus 387 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~---~e~~~~L~--~~~-~~~~ii~IS 460 (494)
+|+|+|+++. .++.....++.++... ..+.+.|+++|+||+|+... ++..+.+. ... ....++++|
T Consensus 80 ii~v~D~t~~-------~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 151 (168)
T cd04149 80 LIFVVDSADR-------DRIDEARQELHRIIND-REMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSC 151 (168)
T ss_pred EEEEEeCCch-------hhHHHHHHHHHHHhcC-HhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEee
Confidence 9999999872 3444444444333221 12346899999999998642 23222221 111 123678999
Q ss_pred cccCCCHHHHHHHHHH
Q 011082 461 AVLEEGVPELKVGLRM 476 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~ 476 (494)
|++|+|+++++++|.+
T Consensus 152 Ak~g~gv~~~~~~l~~ 167 (168)
T cd04149 152 ATSGDGLYEGLTWLSS 167 (168)
T ss_pred CCCCCChHHHHHHHhc
Confidence 9999999999998864
No 100
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.73 E-value=6.1e-17 Score=171.77 Aligned_cols=160 Identities=24% Similarity=0.330 Sum_probs=119.0
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCCccc-cccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE-NRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~-~~~L~~~fl~~i~~ad 385 (494)
+|+|||.||+|||||+|+|++.+. .+.+++++|.+...+.+.+++..+.++||||+...... ...+......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 489999999999999999998764 46889999999999999999999999999998542211 1122334456788999
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHHcCCCCEEEEEcccCC
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVLEE 465 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~~~~~ii~ISA~~g~ 465 (494)
++++|+|+.... . .....+...+.. .++|+++|+||+|+...+.....+.+ +.-.++++|||+++.
T Consensus 81 ~vl~vvD~~~~~------~--~~d~~i~~~l~~-----~~~piilVvNK~D~~~~~~~~~~~~~-lg~~~~~~vSa~~g~ 146 (429)
T TIGR03594 81 VILFVVDGREGL------T--PEDEEIAKWLRK-----SGKPVILVANKIDGKKEDAVAAEFYS-LGFGEPIPISAEHGR 146 (429)
T ss_pred EEEEEEeCCCCC------C--HHHHHHHHHHHH-----hCCCEEEEEECccCCcccccHHHHHh-cCCCCeEEEeCCcCC
Confidence 999999987631 1 222233344433 26899999999998765433333322 223378999999999
Q ss_pred CHHHHHHHHHHHhccc
Q 011082 466 GVPELKVGLRMLVNGE 481 (494)
Q Consensus 466 gI~~L~~~I~~~l~~~ 481 (494)
|+++|++.+...+.+.
T Consensus 147 gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 147 GIGDLLDAILELLPEE 162 (429)
T ss_pred ChHHHHHHHHHhcCcc
Confidence 9999999999888653
No 101
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.73 E-value=6.5e-17 Score=171.79 Aligned_cols=160 Identities=26% Similarity=0.311 Sum_probs=116.1
Q ss_pred eeccceeeeeCCCCCcHHHHHHHHHcCC-CCcccccceeecceeeEEeecCcceEEecCCCccCCccccccch-hhHHHH
Q 011082 303 LKSIADVGLVGMPSAGKSTLLGAISRAK-PAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLG-HAFLRH 380 (494)
Q Consensus 303 lk~~~~V~LVG~~nAGKSTLLn~Lt~~~-~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~-~~fl~~ 380 (494)
++...+|+|+|+||||||||+|+|++.. ..+.++++||.+...+.+.+++..+.++||||+.+....-...+ .....+
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 4566789999999999999999999875 36789999999999999999999999999999965322111111 123467
Q ss_pred HHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHHcCCCCEEEEE
Q 011082 381 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 381 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~~~~~ii~IS 460 (494)
++.+|++++|+|+++. ...... ++.++.. .+.|+|+|+||+|+... + .+.+.+.+ +.+++.+|
T Consensus 280 ~~~aD~il~V~D~s~~-------~s~~~~--~l~~~~~-----~~~piIlV~NK~Dl~~~-~-~~~~~~~~-~~~~~~vS 342 (442)
T TIGR00450 280 IKQADLVIYVLDASQP-------LTKDDF--LIIDLNK-----SKKPFILVLNKIDLKIN-S-LEFFVSSK-VLNSSNLS 342 (442)
T ss_pred HhhCCEEEEEEECCCC-------CChhHH--HHHHHhh-----CCCCEEEEEECccCCCc-c-hhhhhhhc-CCceEEEE
Confidence 8899999999999863 222322 3333321 36899999999999754 2 12333322 45789999
Q ss_pred cccCCCHHHHHHHHHHHhcc
Q 011082 461 AVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~ 480 (494)
|++ .||+++++.|.+.+.+
T Consensus 343 ak~-~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 343 AKQ-LKIKALVDLLTQKINA 361 (442)
T ss_pred Eec-CCHHHHHHHHHHHHHH
Confidence 998 5888888777776654
No 102
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=1.3e-16 Score=169.63 Aligned_cols=162 Identities=24% Similarity=0.299 Sum_probs=119.6
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCCccccccch----hhHHHH
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLG----HAFLRH 380 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~----~~fl~~ 380 (494)
..+|+++|.+|+|||||+|+|++... .+.+++++|.+.....+..++..+.++||||+....+....+. ...+++
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~ 252 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKA 252 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHH
Confidence 46899999999999999999998753 5678899999888777778888999999999876544322221 123567
Q ss_pred HHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH---HHHHHHHHHc---CCC
Q 011082 381 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRV---QGV 454 (494)
Q Consensus 381 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~---e~~~~L~~~~---~~~ 454 (494)
+..+|++|+|+|++.. ..... ..+...+.. ..+|+|+|+||+|+.+.+ +..+.+...+ ...
T Consensus 253 ~~~ad~~ilViD~~~~-------~~~~~-~~i~~~~~~-----~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 319 (435)
T PRK00093 253 IERADVVLLVIDATEG-------ITEQD-LRIAGLALE-----AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYA 319 (435)
T ss_pred HHHCCEEEEEEeCCCC-------CCHHH-HHHHHHHHH-----cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCC
Confidence 8899999999999873 22222 233333322 268999999999998543 2333344333 457
Q ss_pred CEEEEEcccCCCHHHHHHHHHHHhcc
Q 011082 455 PIYPVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 455 ~ii~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
+++++||+++.|++++++.+.+....
T Consensus 320 ~i~~~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 320 PIVFISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999998876654
No 103
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.72 E-value=1.3e-16 Score=148.47 Aligned_cols=152 Identities=26% Similarity=0.356 Sum_probs=107.4
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcc----------------cccceeecceeeEEeecCcceEEecCCCccCCccccc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVG----------------HYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENR 371 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~----------------~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~ 371 (494)
+|+++|.+|||||||+|+|++...... ....+|+......+.+.+..+.++||||+..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~------ 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHED------ 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHH------
Confidence 489999999999999999988744321 1233555655566666678899999999864
Q ss_pred cchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH---HHHHHHH
Q 011082 372 GLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELE 448 (494)
Q Consensus 372 ~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~---e~~~~L~ 448 (494)
+...+...+..+|++++|+|+++.. . .....++..+.. .+.|+++|+||+|+.... ...+.+.
T Consensus 75 -~~~~~~~~~~~~d~~i~v~d~~~~~-------~-~~~~~~~~~~~~-----~~~~i~iv~nK~D~~~~~~~~~~~~~~~ 140 (189)
T cd00881 75 -FSSEVIRGLSVSDGAILVVDANEGV-------Q-PQTREHLRIARE-----GGLPIIVAINKIDRVGEEDLEEVLREIK 140 (189)
T ss_pred -HHHHHHHHHHhcCEEEEEEECCCCC-------c-HHHHHHHHHHHH-----CCCCeEEEEECCCCcchhcHHHHHHHHH
Confidence 3344566778999999999988631 1 122223333322 378999999999997632 2223333
Q ss_pred HHc----------------CCCCEEEEEcccCCCHHHHHHHHHHHhc
Q 011082 449 RRV----------------QGVPIYPVCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 449 ~~~----------------~~~~ii~ISA~~g~gI~~L~~~I~~~l~ 479 (494)
+.+ ...+++++||+++.|+++++++|...+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 141 ELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred HHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 322 2468999999999999999999998764
No 104
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.72 E-value=8.7e-17 Score=180.68 Aligned_cols=156 Identities=25% Similarity=0.408 Sum_probs=119.1
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCcccc--ccchhhHHHH---HH
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN--RGLGHAFLRH---IE 382 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~--~~L~~~fl~~---i~ 382 (494)
+|+++|.||||||||+|+|++.+..+++++++|.+...+.+.+++..+.++||||+.+-.... ..+.....+. .+
T Consensus 5 ~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~ 84 (772)
T PRK09554 5 TIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSG 84 (772)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhcc
Confidence 699999999999999999999988999999999999999999888999999999997632211 1122222222 23
Q ss_pred hhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH---HHHHHHHHHcCCCCEEEE
Q 011082 383 RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYPV 459 (494)
Q Consensus 383 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~---e~~~~L~~~~~~~~ii~I 459 (494)
.+|++++|+|.++. +....+..++.. .+.|+++|+||+|+.+.. ...+.+++.+ +.+++++
T Consensus 85 ~aD~vI~VvDat~l----------er~l~l~~ql~e-----~giPvIvVlNK~Dl~~~~~i~id~~~L~~~L-G~pVvpi 148 (772)
T PRK09554 85 DADLLINVVDASNL----------ERNLYLTLQLLE-----LGIPCIVALNMLDIAEKQNIRIDIDALSARL-GCPVIPL 148 (772)
T ss_pred CCCEEEEEecCCcc----------hhhHHHHHHHHH-----cCCCEEEEEEchhhhhccCcHHHHHHHHHHh-CCCEEEE
Confidence 78999999998762 111223344433 268999999999986432 3345666665 6799999
Q ss_pred EcccCCCHHHHHHHHHHHhc
Q 011082 460 CAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~ 479 (494)
||.+++|++++.+.+.+...
T Consensus 149 SA~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 149 VSTRGRGIEALKLAIDRHQA 168 (772)
T ss_pred EeecCCCHHHHHHHHHHhhh
Confidence 99999999999999988764
No 105
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.72 E-value=1.7e-16 Score=146.23 Aligned_cols=157 Identities=15% Similarity=0.102 Sum_probs=106.8
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+++|.+|+|||||++++.+.......++..+.+.....+.+++ ..+.+|||||..+ +......+++.+
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-------~~~~~~~~~~~~ 78 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER-------FRSLRTPFYRGS 78 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHH-------HHHhHHHHhcCC
Confidence 4799999999999999999987644322222222222233444555 5678999999754 222233457789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcc--cCCCCEEEEEeCCCcCChH---HHHHHHHHHcCCCCEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEG--LSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYPV 459 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~--l~~~P~IlVlNKiDl~~~~---e~~~~L~~~~~~~~ii~I 459 (494)
|++++|+|+++ ..+...+..+..++..+... ..+.|.++|+||+|+.... +....+.+.+...+++++
T Consensus 79 d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~ 151 (170)
T cd04116 79 DCCLLTFAVDD-------SQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFET 151 (170)
T ss_pred CEEEEEEECCC-------HHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEE
Confidence 99999999987 35566666666666544321 2357999999999986432 223334343433579999
Q ss_pred EcccCCCHHHHHHHHHHH
Q 011082 460 CAVLEEGVPELKVGLRML 477 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~ 477 (494)
||+++.|++++++.+.+.
T Consensus 152 Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 152 SAKDATNVAAAFEEAVRR 169 (170)
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999998764
No 106
>PLN03110 Rab GTPase; Provisional
Probab=99.72 E-value=6.9e-17 Score=156.04 Aligned_cols=157 Identities=16% Similarity=0.190 Sum_probs=115.4
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
-+|++||.+|||||||+++|++........+....+.....+.+++ ..+.+|||||..+ +...+..+++.+
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~~~~ 85 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER-------YRAITSAYYRGA 85 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHhCCC
Confidence 4799999999999999999998755433334334444455666665 5789999999754 333344567889
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~IS 460 (494)
+++|+|+|+++ ..+++.+..|+..+..+.. .+.|+++|+||+|+... .+....+.... +.+++++|
T Consensus 86 ~~~ilv~d~~~-------~~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~-~~~~~e~S 155 (216)
T PLN03110 86 VGALLVYDITK-------RQTFDNVQRWLRELRDHAD--SNIVIMMAGNKSDLNHLRSVAEEDGQALAEKE-GLSFLETS 155 (216)
T ss_pred CEEEEEEECCC-------hHHHHHHHHHHHHHHHhCC--CCCeEEEEEEChhcccccCCCHHHHHHHHHHc-CCEEEEEe
Confidence 99999999987 3566777777766655422 36899999999998643 23334444443 67899999
Q ss_pred cccCCCHHHHHHHHHHHhcc
Q 011082 461 AVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~ 480 (494)
|+++.|++++++.|...+.+
T Consensus 156 A~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 156 ALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999877754
No 107
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.72 E-value=1.1e-16 Score=151.29 Aligned_cols=152 Identities=29% Similarity=0.370 Sum_probs=104.0
Q ss_pred eeeeeCCCCCcHHHHHHHHHcC-------CCCcccccceeecceeeEEeec--------------CcceEEecCCCccCC
Q 011082 308 DVGLVGMPSAGKSTLLGAISRA-------KPAVGHYSFTTLRPNLGNMNFD--------------DIQITVADIPGLIKG 366 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~-------~~~i~~~~ftTl~p~~g~v~~~--------------~~~~~l~DtPGli~~ 366 (494)
+|+++|.+|+|||||+++|++. .......+.+|.+.....+.+. +..+.++||||+..
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~- 80 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS- 80 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH-
Confidence 5899999999999999999873 1122334456777665555554 57899999999842
Q ss_pred ccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH---H
Q 011082 367 AHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE---V 443 (494)
Q Consensus 367 a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e---~ 443 (494)
+...+......+|++++|+|++... .......+ .... ....|.++|+||+|+..... .
T Consensus 81 ------~~~~~~~~~~~~d~vi~VvD~~~~~-------~~~~~~~~-~~~~-----~~~~~~iiv~NK~Dl~~~~~~~~~ 141 (192)
T cd01889 81 ------LIRTIIGGAQIIDLMLLVVDATKGI-------QTQTAECL-VIGE-----ILCKKLIVVLNKIDLIPEEERERK 141 (192)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCc-------cHHHHHHH-HHHH-----HcCCCEEEEEECcccCCHHHHHHH
Confidence 4445556667789999999988621 11111111 1111 12579999999999975322 2
Q ss_pred HHHHHH----H-----cCCCCEEEEEcccCCCHHHHHHHHHHHhc
Q 011082 444 YEELER----R-----VQGVPIYPVCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 444 ~~~L~~----~-----~~~~~ii~ISA~~g~gI~~L~~~I~~~l~ 479 (494)
.+.+++ . ..+.+++++||++++|+++|++.|...+.
T Consensus 142 ~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 142 IEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 233322 2 23568999999999999999999988764
No 108
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.72 E-value=1.7e-16 Score=143.55 Aligned_cols=153 Identities=17% Similarity=0.187 Sum_probs=111.4
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|++|||||||+++|++.. ....+..++.+.....+.+++ ..+.++|+||... +.......+..+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~~~ 72 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT-FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE-------FSAMRDLYIRQGD 72 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHHhcCC
Confidence 48999999999999999999765 556666666666666666664 5688999999765 2222345677899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEEc
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~ISA 461 (494)
++++|+|+++ ..+......+...+...... ...|+++|+||+|+.... +....+...+ ..+++++||
T Consensus 73 ~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~ 143 (160)
T cd00876 73 GFILVYSITD-------RESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLENERQVSKEEGKALAKEW-GCPFIETSA 143 (160)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccccceecHHHHHHHHHHc-CCcEEEecc
Confidence 9999999887 24556666666655543221 368999999999987621 2222232322 368999999
Q ss_pred ccCCCHHHHHHHHHHH
Q 011082 462 VLEEGVPELKVGLRML 477 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~ 477 (494)
+++.|+++++++|.+.
T Consensus 144 ~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 144 KDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999999865
No 109
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=9.8e-17 Score=170.58 Aligned_cols=158 Identities=23% Similarity=0.297 Sum_probs=115.5
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCCcc-ccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAH-ENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~-~~~~L~~~fl~~i~~a 384 (494)
++|+|||.+|||||||+|+|++.+. .+.+++++|.+...+.+.+++..+.++||||+..... ....+......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 5799999999999999999998865 4678899999999999999999999999999976221 0111223345678899
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHHcCCCCEEEEEcccC
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVLE 464 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~~~~~ii~ISA~~g 464 (494)
|++|+|+|+.+.. ... ...+...+.. ...|+|+|+||+|+...+.....+.. +.-..++++||+++
T Consensus 82 d~il~vvd~~~~~------~~~--~~~~~~~l~~-----~~~piilv~NK~D~~~~~~~~~~~~~-lg~~~~~~iSa~~g 147 (435)
T PRK00093 82 DVILFVVDGRAGL------TPA--DEEIAKILRK-----SNKPVILVVNKVDGPDEEADAYEFYS-LGLGEPYPISAEHG 147 (435)
T ss_pred CEEEEEEECCCCC------CHH--HHHHHHHHHH-----cCCcEEEEEECccCccchhhHHHHHh-cCCCCCEEEEeeCC
Confidence 9999999988631 111 1222233332 26899999999998664333333322 22235799999999
Q ss_pred CCHHHHHHHHHHHh
Q 011082 465 EGVPELKVGLRMLV 478 (494)
Q Consensus 465 ~gI~~L~~~I~~~l 478 (494)
.|+++|++.|....
T Consensus 148 ~gv~~l~~~I~~~~ 161 (435)
T PRK00093 148 RGIGDLLDAILEEL 161 (435)
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999998744
No 110
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.72 E-value=1.1e-16 Score=165.90 Aligned_cols=165 Identities=22% Similarity=0.279 Sum_probs=126.2
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCCccccccc----hhhHHH
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGL----GHAFLR 379 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L----~~~fl~ 379 (494)
..-+|+|||.||+|||||+|+|++... -+++.++||.++..-.+.+++..+.++||.|+-....-...+ ...-+.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 345899999999999999999999855 568999999999999999999999999999986643321111 123467
Q ss_pred HHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH-----HHHHHHHHHc---
Q 011082 380 HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE-----EVYEELERRV--- 451 (494)
Q Consensus 380 ~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~-----e~~~~L~~~~--- 451 (494)
.++.+|++++|+|++.+ ..++...+...... ..++.|+|+||+|+...+ +..+.+...+
T Consensus 257 aI~~a~vvllviDa~~~--------~~~qD~~ia~~i~~-----~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l 323 (444)
T COG1160 257 AIERADVVLLVIDATEG--------ISEQDLRIAGLIEE-----AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFL 323 (444)
T ss_pred HHhhcCEEEEEEECCCC--------chHHHHHHHHHHHH-----cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccc
Confidence 89999999999999873 23344444333322 378999999999987642 2333444444
Q ss_pred CCCCEEEEEcccCCCHHHHHHHHHHHhcccC
Q 011082 452 QGVPIYPVCAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 452 ~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
...++++|||+++.++.+|++.+.+....+.
T Consensus 324 ~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~ 354 (444)
T COG1160 324 DFAPIVFISALTGQGLDKLFEAIKEIYECAT 354 (444)
T ss_pred cCCeEEEEEecCCCChHHHHHHHHHHHHHhc
Confidence 4578999999999999999999988776554
No 111
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.72 E-value=1.2e-16 Score=147.53 Aligned_cols=153 Identities=18% Similarity=0.172 Sum_probs=104.6
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEe--ecC--cceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMN--FDD--IQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~--~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
+|+++|.+|||||||++++...... ..+. .|.......+. .++ ..+.+|||||...... + ...++..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~-~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~---~~~~~~~ 72 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFE-KKYV-ATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG----L---RDGYYIG 72 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCC-CceeeEEEEEEEEECCEEEEEEEEECCCChhhcc----c---cHHHhcC
Confidence 6899999999999999999854321 1121 22222222222 222 5789999999854211 1 1234567
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH--HHHHHHHHcCCCCEEEEEc
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE--VYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e--~~~~L~~~~~~~~ii~ISA 461 (494)
+|++|+|+|+++ ..++..+..+..++..+.. +.|+++|+||+|+..... ....+.+. ...+++++||
T Consensus 73 ~d~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~e~Sa 141 (166)
T cd00877 73 GQCAIIMFDVTS-------RVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDRKVKAKQITFHRK-KNLQYYEISA 141 (166)
T ss_pred CCEEEEEEECCC-------HHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccccCCHHHHHHHHH-cCCEEEEEeC
Confidence 999999999987 3566667777777765532 799999999999974321 11122222 3567999999
Q ss_pred ccCCCHHHHHHHHHHHhcc
Q 011082 462 VLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l~~ 480 (494)
++++|+++++++|.+.+.+
T Consensus 142 ~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 142 KSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred CCCCChHHHHHHHHHHHHh
Confidence 9999999999999987754
No 112
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.72 E-value=1.2e-16 Score=146.65 Aligned_cols=151 Identities=17% Similarity=0.278 Sum_probs=107.0
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeec--ceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLR--PNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~--p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
+|+++|++|+|||||++.+.+.... ..+ ..|.. .....+.+++ ..+.+|||+|... +......++..
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~-~~~-~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~-------~~~~~~~~~~~ 72 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFH-SSH-ISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER-------YQTITKQYYRR 72 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC-CCC-CCceeeEEEEEEEEECCEEEEEEEEeCCCcHh-------HHhhHHHHhcC
Confidence 5899999999999999999875432 222 22222 2233455555 5678999999754 22223345678
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEE
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPV 459 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~I 459 (494)
+|++++|+|+++ ..+++.+..+..++..+. ..+.|.++|.||+|+.... +....+.+.. +.+++++
T Consensus 73 ~~~~i~v~d~~~-------~~sf~~~~~~~~~~~~~~--~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~ 142 (161)
T cd04117 73 AQGIFLVYDISS-------ERSYQHIMKWVSDVDEYA--PEGVQKILIGNKADEEQKRQVGDEQGNKLAKEY-GMDFFET 142 (161)
T ss_pred CcEEEEEEECCC-------HHHHHHHHHHHHHHHHhC--CCCCeEEEEEECcccccccCCCHHHHHHHHHHc-CCEEEEE
Confidence 999999999987 356777777777665543 2368999999999986432 2333444443 4689999
Q ss_pred EcccCCCHHHHHHHHHHH
Q 011082 460 CAVLEEGVPELKVGLRML 477 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~ 477 (494)
||+++.|+++++.+|.++
T Consensus 143 Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 143 SACTNSNIKESFTRLTEL 160 (161)
T ss_pred eCCCCCCHHHHHHHHHhh
Confidence 999999999999999865
No 113
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.72 E-value=7.4e-17 Score=146.82 Aligned_cols=151 Identities=28% Similarity=0.361 Sum_probs=100.6
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeec-CcceEEecCCCccCCccccccchhhHHHHHHhhce
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD-DIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 386 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~-~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ 386 (494)
+|+++|++|||||||+++|++.... ... +|.......+..+ ...+.++||||... +...+..++..+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~-~~~--~t~~~~~~~~~~~~~~~l~i~D~~G~~~-------~~~~~~~~~~~~~~ 70 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV-TTI--PTVGFNVEMLQLEKHLSLTVWDVGGQEK-------MRTVWKCYLENTDG 70 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc-ccc--CccCcceEEEEeCCceEEEEEECCCCHh-------HHHHHHHHhccCCE
Confidence 4789999999999999999986432 111 2322333344443 36799999999754 33345566888999
Q ss_pred eeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh---HHHHHHHH--HHc--CCCCEEEE
Q 011082 387 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELE--RRV--QGVPIYPV 459 (494)
Q Consensus 387 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~---~e~~~~L~--~~~--~~~~ii~I 459 (494)
+++|+|+++. ........++.++... ..+.+.|+++|+||+|+... +++...+. ... .+.+++++
T Consensus 71 iv~v~D~~~~-------~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 142 (160)
T cd04156 71 LVYVVDSSDE-------ARLDESQKELKHILKN-EHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPC 142 (160)
T ss_pred EEEEEECCcH-------HHHHHHHHHHHHHHhc-hhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEec
Confidence 9999999872 2334444444443321 22357899999999998642 23222221 111 13468999
Q ss_pred EcccCCCHHHHHHHHHH
Q 011082 460 CAVLEEGVPELKVGLRM 476 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~ 476 (494)
||++++|+++++++|.+
T Consensus 143 Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 143 SAVTGEGLAEAFRKLAS 159 (160)
T ss_pred ccccCCChHHHHHHHhc
Confidence 99999999999998864
No 114
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.71 E-value=1.3e-16 Score=149.75 Aligned_cols=157 Identities=22% Similarity=0.251 Sum_probs=102.7
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEee---cCcceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNF---DDIQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~---~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
+|+++|.+|||||||+++++.... +..++..+.....-.+.. .+..+.+|||||... +...+...++.+
T Consensus 5 kv~~vG~~~~GKTsli~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~~~~ 76 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKFNEF-VNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEK-------LRPLWKSYTRCT 76 (183)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCc-CCcCCccccceeEEEeeccCCCceEEEEEECCCcHh-------HHHHHHHHhccC
Confidence 689999999999999999987533 222332222222222222 236789999999753 223344457789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh--HHHHHHHHH---Hc--CCCCEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYEELER---RV--QGVPIY 457 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~--~e~~~~L~~---~~--~~~~ii 457 (494)
|++++|+|+++. .+......++.++..+.. ..+.|+++|+||+|+... .+..+.+.. .. ...+++
T Consensus 77 d~ii~v~D~~~~-------~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (183)
T cd04152 77 DGIVFVVDSVDV-------ERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQ 148 (183)
T ss_pred CEEEEEEECCCH-------HHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEE
Confidence 999999998872 334444445454444322 247899999999998642 121222221 11 124588
Q ss_pred EEEcccCCCHHHHHHHHHHHhcc
Q 011082 458 PVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 458 ~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
++||++++|+++++++|.+.+.+
T Consensus 149 ~~SA~~~~gi~~l~~~l~~~l~~ 171 (183)
T cd04152 149 PACAIIGEGLQEGLEKLYEMILK 171 (183)
T ss_pred EeecccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999887754
No 115
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.71 E-value=1.5e-16 Score=149.59 Aligned_cols=156 Identities=17% Similarity=0.198 Sum_probs=109.0
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|.+|+|||||+++|++........+..+.+.....+.+++ ..+.+|||||... +.......++.+|
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~-------~~~~~~~~~~~~d 74 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQER-------FRSLNNSYYRGAH 74 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH-------HHhhHHHHccCCC
Confidence 689999999999999999997643221122222223333455554 5678999999754 2223345678899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEEc
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~ISA 461 (494)
++++|+|+++ ..++..+..++.++..+.. ...|.|+|+||+|+.... +....+.+.. +.+++++||
T Consensus 75 ~iilv~d~~~-------~~s~~~i~~~~~~i~~~~~--~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~evSa 144 (188)
T cd04125 75 GYLLVYDVTD-------QESFENLKFWINEINRYAR--ENVIKVIVANKSDLVNNKVVDSNIAKSFCDSL-NIPFFETSA 144 (188)
T ss_pred EEEEEEECcC-------HHHHHHHHHHHHHHHHhCC--CCCeEEEEEECCCCcccccCCHHHHHHHHHHc-CCeEEEEeC
Confidence 9999999987 3566777777777765532 357899999999987432 2223333333 568999999
Q ss_pred ccCCCHHHHHHHHHHHhcc
Q 011082 462 VLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l~~ 480 (494)
+++.|++++++.|.+.+..
T Consensus 145 ~~~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 145 KQSINVEEAFILLVKLIIK 163 (188)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999998887654
No 116
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.71 E-value=3.3e-16 Score=139.61 Aligned_cols=155 Identities=29% Similarity=0.310 Sum_probs=112.9
Q ss_pred eeCCCCCcHHHHHHHHHcCCCC-cccccceeecceeeEEeec-CcceEEecCCCccCCccccccchhhHHHHHHhhceee
Q 011082 311 LVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFD-DIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLA 388 (494)
Q Consensus 311 LVG~~nAGKSTLLn~Lt~~~~~-i~~~~ftTl~p~~g~v~~~-~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll 388 (494)
|+|++|||||||+++|++.... ...++.+|..+....+... ...+.++||||+.+...........+...+..+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 5899999999999999987654 6777788888777776665 5789999999998755443322344556678899999
Q ss_pred EEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHH------HHHHcCCCCEEEEEcc
Q 011082 389 YVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEE------LERRVQGVPIYPVCAV 462 (494)
Q Consensus 389 ~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~------L~~~~~~~~ii~ISA~ 462 (494)
+|+|.+.. ....... +..... ..+.|.++|+||+|+......... ........+++++||.
T Consensus 81 ~v~~~~~~-------~~~~~~~-~~~~~~-----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 147 (163)
T cd00880 81 FVVDADLR-------ADEEEEK-LLELLR-----ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSAL 147 (163)
T ss_pred EEEeCCCC-------CCHHHHH-HHHHHH-----hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeee
Confidence 99999873 2222222 222222 137899999999999876543332 1122256789999999
Q ss_pred cCCCHHHHHHHHHHHh
Q 011082 463 LEEGVPELKVGLRMLV 478 (494)
Q Consensus 463 ~g~gI~~L~~~I~~~l 478 (494)
++.|+++++++|.+.+
T Consensus 148 ~~~~v~~l~~~l~~~~ 163 (163)
T cd00880 148 TGEGIDELREALIEAL 163 (163)
T ss_pred ccCCHHHHHHHHHhhC
Confidence 9999999999998753
No 117
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.71 E-value=2.4e-16 Score=148.68 Aligned_cols=155 Identities=15% Similarity=0.130 Sum_probs=106.4
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecce-eeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPN-LGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~-~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
+|+++|.+|+|||||+++|++.+.....|..|+-... ...+.+++ ..+.+|||||..+.. ......+..+
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-------~~~~~~~~~~ 74 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYE-------AMSRIYYRGA 74 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhh-------hhhHhhcCCC
Confidence 6899999999999999999987554434443332211 23455565 456799999975421 1122345689
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH--------HHHHHHHHHcCCCCE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE--------EVYEELERRVQGVPI 456 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~--------e~~~~L~~~~~~~~i 456 (494)
|++++|+|+++ ..+++....++.++.... .+.|+++|+||+|+.... +....+...+ +.++
T Consensus 75 d~iilv~d~~~-------~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~-~~~~ 143 (193)
T cd04118 75 KAAIVCYDLTD-------SSSFERAKFWVKELQNLE---EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEI-KAQH 143 (193)
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHhcC---CCCCEEEEEEcccccccccccCccCHHHHHHHHHHc-CCeE
Confidence 99999999987 355666666666665432 268999999999986421 1122223322 4678
Q ss_pred EEEEcccCCCHHHHHHHHHHHhcc
Q 011082 457 YPVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 457 i~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
+++||+++.|+++|++.|.+.+.+
T Consensus 144 ~~~Sa~~~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 144 FETSSKTGQNVDELFQKVAEDFVS 167 (193)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999987754
No 118
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.71 E-value=2e-16 Score=147.25 Aligned_cols=157 Identities=14% Similarity=0.159 Sum_probs=108.1
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|.+|+|||||++.+...... ..+..|+-......+.+++ ..+.++||||..+ +......++..+|
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~l~~~~~~~~d 75 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISHSFP-DYHDPTIEDAYKQQARIDNEPALLDILDTAGQAE-------FTAMRDQYMRCGE 75 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCC-CCcCCcccceEEEEEEECCEEEEEEEEeCCCchh-------hHHHhHHHhhcCC
Confidence 6899999999999999999865332 2222222122223345555 5688999999865 2222345577899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEEc
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~ISA 461 (494)
++++|+|+++ ..++.....+...+.... ...+.|+|+|+||+|+.... +....+.+.. +.+++++||
T Consensus 76 ~~ilv~d~~~-------~~Sf~~~~~~~~~i~~~~-~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~-~~~~~e~Sa 146 (172)
T cd04141 76 GFIICYSVTD-------RHSFQEASEFKKLITRVR-LTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREF-NCPFFETSA 146 (172)
T ss_pred EEEEEEECCc-------hhHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHh-CCEEEEEec
Confidence 9999999987 366676666655554432 12368999999999986431 2223333333 578999999
Q ss_pred ccCCCHHHHHHHHHHHhccc
Q 011082 462 VLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l~~~ 481 (494)
+++.||++++++|...+.+.
T Consensus 147 ~~~~~v~~~f~~l~~~~~~~ 166 (172)
T cd04141 147 ALRHYIDDAFHGLVREIRRK 166 (172)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999998776543
No 119
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.71 E-value=3e-16 Score=143.05 Aligned_cols=154 Identities=19% Similarity=0.204 Sum_probs=104.7
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|++|||||||+++|++.+......+-.........+.+++ ..+.+|||||..+ +.......+..+|
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~~ 75 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER-------YRSLAPMYYRGAA 75 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHH-------HHHHHHHHhccCC
Confidence 689999999999999999998754321111111112223444444 5688999999643 1111223567799
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEEEc
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~ISA 461 (494)
++++|+|+++ ..++.....++..+..... ...|+++|+||+|+... .+....+.... +.+++++||
T Consensus 76 ~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 145 (163)
T cd01860 76 AAIVVYDITS-------EESFEKAKSWVKELQRNAS--PNIIIALVGNKADLESKRQVSTEEAQEYADEN-GLLFFETSA 145 (163)
T ss_pred EEEEEEECcC-------HHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccCcCCHHHHHHHHHHc-CCEEEEEEC
Confidence 9999999986 2456666666666654321 46889999999998732 12222333333 478999999
Q ss_pred ccCCCHHHHHHHHHHHh
Q 011082 462 VLEEGVPELKVGLRMLV 478 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l 478 (494)
+++.|+++++++|.+.+
T Consensus 146 ~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 146 KTGENVNELFTEIAKKL 162 (163)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998765
No 120
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.71 E-value=1.2e-16 Score=147.68 Aligned_cols=151 Identities=25% Similarity=0.307 Sum_probs=105.8
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhcee
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 387 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~l 387 (494)
+|+++|++|||||||+++|++.. ...+ ..|+......+.+.+..+.++||||... +...+..+++.+|++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~--~~~~-~~t~g~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~a~~i 70 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEI--PKKV-APTVGFTPTKLRLDKYEVCIFDLGGGAN-------FRGIWVNYYAEAHGL 70 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC--Cccc-cCcccceEEEEEECCEEEEEEECCCcHH-------HHHHHHHHHcCCCEE
Confidence 47899999999999999999762 2222 2344444556677778899999999744 333456778999999
Q ss_pred eEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH---HHHHHH--HHHc----CCCCEEE
Q 011082 388 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEEL--ERRV----QGVPIYP 458 (494)
Q Consensus 388 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~---e~~~~L--~~~~----~~~~ii~ 458 (494)
++|+|+++ ...+.....++..+... ..+.+.|+++|+||+|+.... ++.+.+ .+.. ....+++
T Consensus 71 i~V~D~s~-------~~s~~~~~~~l~~l~~~-~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~ 142 (167)
T cd04161 71 VFVVDSSD-------DDRVQEVKEILRELLQH-PRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEP 142 (167)
T ss_pred EEEEECCc-------hhHHHHHHHHHHHHHcC-ccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEE
Confidence 99999987 24455555555555432 233578999999999997643 222221 1111 1246788
Q ss_pred EEcccC------CCHHHHHHHHHH
Q 011082 459 VCAVLE------EGVPELKVGLRM 476 (494)
Q Consensus 459 ISA~~g------~gI~~L~~~I~~ 476 (494)
+||++| .||++.++||..
T Consensus 143 ~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 143 CSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred eEceeCCCCccccCHHHHHHHHhc
Confidence 999998 899999999863
No 121
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.71 E-value=1.6e-16 Score=148.20 Aligned_cols=154 Identities=27% Similarity=0.320 Sum_probs=102.7
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhce
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 386 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ 386 (494)
.+|+++|.+|||||||++++..... . ++. +|.......+.+.+..+.+|||||... +...+..+++.+|+
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~~~~-~-~~~-~t~~~~~~~~~~~~~~l~l~D~~G~~~-------~~~~~~~~~~~ad~ 83 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLGES-V-TTI-PTIGFNVETVTYKNISFTVWDVGGQDK-------IRPLWRHYYTNTQG 83 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC-C-CcC-CccccceEEEEECCEEEEEEECCCChh-------hHHHHHHHhCCCCE
Confidence 3799999999999999999964322 1 221 233333344566678899999999854 22234455789999
Q ss_pred eeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh---HHHHHHHHHH-c--CCCCEEEEE
Q 011082 387 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERR-V--QGVPIYPVC 460 (494)
Q Consensus 387 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~---~e~~~~L~~~-~--~~~~ii~IS 460 (494)
+|+|+|+++ +..++....++.++... ..+.+.|++||+||+|+.+. .++.+.+... . ....++++|
T Consensus 84 ii~v~D~t~-------~~s~~~~~~~l~~~~~~-~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 155 (175)
T smart00177 84 LIFVVDSND-------RDRIDEAREELHRMLNE-DELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTC 155 (175)
T ss_pred EEEEEECCC-------HHHHHHHHHHHHHHhhC-HhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEee
Confidence 999999987 23455544444443221 12346899999999999753 2222222110 0 122467899
Q ss_pred cccCCCHHHHHHHHHHHh
Q 011082 461 AVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l 478 (494)
|++|+|+++++++|.+.+
T Consensus 156 a~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 156 ATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998765
No 122
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.71 E-value=2.5e-16 Score=147.04 Aligned_cols=152 Identities=18% Similarity=0.216 Sum_probs=106.4
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|++||.+|+|||||++++..... ..+|..|+.+.....+.+++ ..+.+|||+|..+.. .....++..+|
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f-~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~a~ 74 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYD-------RLRPLSYPQTD 74 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchh-------hhhhhhcccCC
Confidence 689999999999999999987533 34454444333333455555 568899999986521 11223567899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHH-HHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHH----------------HHHH
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVY----------------EELE 448 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~----------------~~L~ 448 (494)
++++|+|+++ ..++.... .|..++.... .+.|+|+|+||+|+....+.. ..+.
T Consensus 75 ~~ilv~d~~~-------~~s~~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a 144 (175)
T cd01874 75 VFLVCFSVVS-------PSSFENVKEKWVPEITHHC---PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLA 144 (175)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHHhC---CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHH
Confidence 9999999987 35566664 4666665443 368999999999986543221 1223
Q ss_pred HHcCCCCEEEEEcccCCCHHHHHHHHHHH
Q 011082 449 RRVQGVPIYPVCAVLEEGVPELKVGLRML 477 (494)
Q Consensus 449 ~~~~~~~ii~ISA~~g~gI~~L~~~I~~~ 477 (494)
+......++++||++|.|++++++.+...
T Consensus 145 ~~~~~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 145 RDLKAVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred HHhCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 33333679999999999999999998764
No 123
>PLN03118 Rab family protein; Provisional
Probab=99.71 E-value=2.3e-16 Score=151.52 Aligned_cols=157 Identities=18% Similarity=0.214 Sum_probs=105.9
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCccccc-ceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYS-FTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~-ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
.+|+|+|.+|||||||+++|++... ..+. .++.+.....+.+++ ..+.++||||..+ +.......++.
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~~~ 85 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSV--EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER-------FRTLTSSYYRN 85 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC--CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchh-------hHHHHHHHHhc
Confidence 4799999999999999999997643 2222 112222233444554 5789999999865 22223456788
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHH-HHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEE
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLI-IELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYP 458 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~-~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~ 458 (494)
+|++|+|+|+++ ..++..+..++ ..+..+. .....|.|+|+||+|+.... +....+... .+..+++
T Consensus 86 ~d~~vlv~D~~~-------~~sf~~~~~~~~~~~~~~~-~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~-~~~~~~e 156 (211)
T PLN03118 86 AQGIILVYDVTR-------RETFTNLSDVWGKEVELYS-TNQDCVKMLVGNKVDRESERDVSREEGMALAKE-HGCLFLE 156 (211)
T ss_pred CCEEEEEEECCC-------HHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccccCccCHHHHHHHHHH-cCCEEEE
Confidence 999999999987 34555554433 3333332 22357899999999986432 112222222 2567899
Q ss_pred EEcccCCCHHHHHHHHHHHhccc
Q 011082 459 VCAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 459 ISA~~g~gI~~L~~~I~~~l~~~ 481 (494)
+||+++.|++++++.|...+...
T Consensus 157 ~SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 157 CSAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred EeCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999877554
No 124
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.71 E-value=2.7e-16 Score=145.99 Aligned_cols=156 Identities=17% Similarity=0.177 Sum_probs=107.7
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCccccccee-ecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTT-LRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftT-l~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
+|++||.+|||||||++++.+... ...|..|. .+.....+.+++ ..+.+|||||..+ +......++..+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~a 73 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-DKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQER-------FKCIASTYYRGA 73 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHH-------HHhhHHHHhcCC
Confidence 689999999999999999998643 23332222 233334455555 5689999999854 222334567899
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH------HHHHHHHHcCCCCEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE------VYEELERRVQGVPIYP 458 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e------~~~~L~~~~~~~~ii~ 458 (494)
|++++|+|+++ ..+......|..++..... -...|.|+|.||+|+..... ....+.+.+ +.+++.
T Consensus 74 d~~ilv~d~~~-------~~s~~~~~~~~~~~~~~~~-~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~e 144 (170)
T cd04108 74 QAIIIVFDLTD-------VASLEHTRQWLEDALKEND-PSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEM-QAEYWS 144 (170)
T ss_pred CEEEEEEECcC-------HHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEChhcCccccccccHHHHHHHHHHc-CCeEEE
Confidence 99999999986 3556666777766543311 12457899999999864322 122333333 457899
Q ss_pred EEcccCCCHHHHHHHHHHHhcc
Q 011082 459 VCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 459 ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
+||+++.|++++++.|..++.+
T Consensus 145 ~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 145 VSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988743
No 125
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.71 E-value=3.6e-16 Score=154.22 Aligned_cols=157 Identities=17% Similarity=0.186 Sum_probs=110.5
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|.+|+|||||++++.+... ...|..|+-+.....+.+++ ..+.+|||+|... +......++..+|
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f-~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~-------~~~~~~~~~~~ad 73 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRF-EEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHP-------FPAMRRLSILTGD 73 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC-CCCCCCChhHhEEEEEEECCEEEEEEEEECCCChh-------hhHHHHHHhccCC
Confidence 589999999999999999986533 23454454444455566666 5678999999754 1111223466899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhc-------ccCCCCEEEEEeCCCcCCh-HHHHHHHHHHc---CCC
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQE-------GLSDRPSLVVANKIDEDGA-EEVYEELERRV---QGV 454 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~-------~l~~~P~IlVlNKiDl~~~-~e~~~~L~~~~---~~~ 454 (494)
++|+|+|+++ ..+++.+..+..++..+.. ...+.|+|+|+||+|+... ....+++.+.+ ...
T Consensus 74 ~iIlVfdv~~-------~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~ 146 (247)
T cd04143 74 VFILVFSLDN-------RESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENC 146 (247)
T ss_pred EEEEEEeCCC-------HHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCC
Confidence 9999999987 3667777777777654421 2347899999999999642 11122232222 246
Q ss_pred CEEEEEcccCCCHHHHHHHHHHHhc
Q 011082 455 PIYPVCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 455 ~ii~ISA~~g~gI~~L~~~I~~~l~ 479 (494)
.++++||+++.|++++++.|..+..
T Consensus 147 ~~~evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 147 AYFEVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 7999999999999999999998763
No 126
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.71 E-value=3.2e-16 Score=149.02 Aligned_cols=156 Identities=17% Similarity=0.123 Sum_probs=109.1
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|.+|||||||++++.+.... ..|..|+.......+.+.+ ..+.++||||.... ......++..+|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-------~~~~~~~~~~ad 72 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE-PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSF-------PAMRKLSIQNSD 72 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchhhheeEEEEECCEEEEEEEEECCCchhh-------hHHHHHHhhcCC
Confidence 4899999999999999999886432 3344444444445566666 57889999997652 111224567899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh-H-----HHHHHHHHHcCCCCEEEE
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA-E-----EVYEELERRVQGVPIYPV 459 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~-~-----e~~~~L~~~~~~~~ii~I 459 (494)
++++|+|+++ ..+++....+...+..+.. ..+.|+|+|+||+|+... . ...+.. ....+.+++++
T Consensus 73 ~vilv~d~~~-------~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~-~~~~~~~~~~~ 143 (198)
T cd04147 73 AFALVYAVDD-------PESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLEEERQVPAKDALSTV-ELDWNCGFVET 143 (198)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEccccccccccccHHHHHHHH-HhhcCCcEEEe
Confidence 9999999987 3456666666666555432 246899999999999652 1 111111 11124578999
Q ss_pred EcccCCCHHHHHHHHHHHhcc
Q 011082 460 CAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~ 480 (494)
||+++.|+++++++|.+.+..
T Consensus 144 Sa~~g~gv~~l~~~l~~~~~~ 164 (198)
T cd04147 144 SAKDNENVLEVFKELLRQANL 164 (198)
T ss_pred cCCCCCCHHHHHHHHHHHhhc
Confidence 999999999999999987653
No 127
>PLN03108 Rab family protein; Provisional
Probab=99.70 E-value=3.4e-16 Score=150.47 Aligned_cols=157 Identities=15% Similarity=0.147 Sum_probs=109.3
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+|+|++|||||||+++|++........+..+.+.....+.+++ ..+.+|||+|... +......++..+
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~-------~~~~~~~~~~~a 79 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES-------FRSITRSYYRGA 79 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHH-------HHHHHHHHhccC
Confidence 4799999999999999999997644332223222333345566665 4578999999754 222334566789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~IS 460 (494)
|++|+|+|+++ ..++..+..+..++..+. ....|+++|+||+|+.... +..+.+.+.+ +.+++++|
T Consensus 80 d~~vlv~D~~~-------~~s~~~l~~~~~~~~~~~--~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~e~S 149 (210)
T PLN03108 80 AGALLVYDITR-------RETFNHLASWLEDARQHA--NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH-GLIFMEAS 149 (210)
T ss_pred CEEEEEEECCc-------HHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccCccccCCCHHHHHHHHHHc-CCEEEEEe
Confidence 99999999987 355666666665554432 2368999999999996531 2223333333 56899999
Q ss_pred cccCCCHHHHHHHHHHHhcc
Q 011082 461 AVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~ 480 (494)
|+++.|+++++.++.+.+..
T Consensus 150 a~~~~~v~e~f~~l~~~~~~ 169 (210)
T PLN03108 150 AKTAQNVEEAFIKTAAKIYK 169 (210)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999888766543
No 128
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.70 E-value=2.3e-16 Score=146.83 Aligned_cols=158 Identities=18% Similarity=0.140 Sum_probs=110.2
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+|+|++|||||||++++++... +..+..++.......+.+++ ..+.++||||..+ +.......+..++
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~~~ 74 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHF-VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDE-------YSILPQKYSIGIH 74 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCcchhhhEEEEEEECCEEEEEEEEECCChHh-------hHHHHHHHHhhCC
Confidence 689999999999999999997643 33344444444445555554 4578999999754 2222234567889
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEEc
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~ISA 461 (494)
.+++|+|+++ ..++.....+...+.... ...+.|.|+|+||+|+.... +....+.+.+ +.+++++||
T Consensus 75 ~~i~v~d~~~-------~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 145 (180)
T cd04137 75 GYILVYSVTS-------RKSFEVVKVIYDKILDML-GKESVPIVLVGNKSDLHTQRQVSTEEGKELAESW-GAAFLESSA 145 (180)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHc-CCeEEEEeC
Confidence 9999999987 245555655555554331 23467999999999986422 1223333333 468999999
Q ss_pred ccCCCHHHHHHHHHHHhcccC
Q 011082 462 VLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l~~~~ 482 (494)
+++.|+++++.+|.+.+....
T Consensus 146 ~~~~gv~~l~~~l~~~~~~~~ 166 (180)
T cd04137 146 RENENVEEAFELLIEEIEKVE 166 (180)
T ss_pred CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999998876543
No 129
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.70 E-value=7.4e-17 Score=152.25 Aligned_cols=154 Identities=27% Similarity=0.404 Sum_probs=108.4
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcc------------------cccceeecceeeEEe--ecCcceEEecCCCccC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVG------------------HYSFTTLRPNLGNMN--FDDIQITVADIPGLIK 365 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~------------------~~~ftTl~p~~g~v~--~~~~~~~l~DtPGli~ 365 (494)
...|+++|..++|||||+.+|+.....+. .....|.+.....+. ..+..+.++||||..+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 45899999999999999999985421111 112344555555555 6668999999999854
Q ss_pred CccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH--HH
Q 011082 366 GAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE--EV 443 (494)
Q Consensus 366 ~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~--e~ 443 (494)
+.......+..+|++|+|+|+.+. ...+....+..+.. .+.|.|+|+||+|+...+ +.
T Consensus 83 -------f~~~~~~~~~~~D~ailvVda~~g--------~~~~~~~~l~~~~~-----~~~p~ivvlNK~D~~~~~~~~~ 142 (188)
T PF00009_consen 83 -------FIKEMIRGLRQADIAILVVDANDG--------IQPQTEEHLKILRE-----LGIPIIVVLNKMDLIEKELEEI 142 (188)
T ss_dssp -------HHHHHHHHHTTSSEEEEEEETTTB--------STHHHHHHHHHHHH-----TT-SEEEEEETCTSSHHHHHHH
T ss_pred -------eeecccceecccccceeeeecccc--------cccccccccccccc-----cccceEEeeeeccchhhhHHHH
Confidence 445566778889999999999873 23444555555543 368999999999998432 23
Q ss_pred HHHHHHHc------C---CCCEEEEEcccCCCHHHHHHHHHHHhc
Q 011082 444 YEELERRV------Q---GVPIYPVCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 444 ~~~L~~~~------~---~~~ii~ISA~~g~gI~~L~~~I~~~l~ 479 (494)
.+++...+ . ..+++++||++|.|+++|++.|.++++
T Consensus 143 ~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 143 IEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 33333222 2 257999999999999999999998875
No 130
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.70 E-value=2e-16 Score=177.74 Aligned_cols=164 Identities=21% Similarity=0.244 Sum_probs=119.7
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCCcc-ccccchhhHHHHH
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAH-ENRGLGHAFLRHI 381 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~-~~~~L~~~fl~~i 381 (494)
...+.|+|+|.||+|||||+|+|++.+. .+.+++++|.+...+...+++..+.++||||+..... ....+.......+
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 4567899999999999999999998765 4678899999988888888888999999999864221 1111223335567
Q ss_pred HhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHHcCCCCEEEEEc
Q 011082 382 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 382 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~~~~~ii~ISA 461 (494)
+.+|++|+|+|++... . .....+...|.. .++|+|+|+||+|+.........+... ....+++|||
T Consensus 353 ~~aD~iL~VvDa~~~~------~--~~d~~i~~~Lr~-----~~~pvIlV~NK~D~~~~~~~~~~~~~l-g~~~~~~iSA 418 (712)
T PRK09518 353 SLADAVVFVVDGQVGL------T--STDERIVRMLRR-----AGKPVVLAVNKIDDQASEYDAAEFWKL-GLGEPYPISA 418 (712)
T ss_pred HhCCEEEEEEECCCCC------C--HHHHHHHHHHHh-----cCCCEEEEEECcccccchhhHHHHHHc-CCCCeEEEEC
Confidence 8999999999987621 1 222234444432 378999999999987543322222221 2235689999
Q ss_pred ccCCCHHHHHHHHHHHhccc
Q 011082 462 VLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l~~~ 481 (494)
+++.||++|+++|.+.+...
T Consensus 419 ~~g~GI~eLl~~i~~~l~~~ 438 (712)
T PRK09518 419 MHGRGVGDLLDEALDSLKVA 438 (712)
T ss_pred CCCCCchHHHHHHHHhcccc
Confidence 99999999999999988653
No 131
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.70 E-value=2.8e-16 Score=147.27 Aligned_cols=157 Identities=17% Similarity=0.135 Sum_probs=107.3
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeec-C--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD-D--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~-~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
+|+++|.+|+|||||+++|.+... ...+..|+.......+... + ..+.+|||||..+ +.......++.+
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~-~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~a 73 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKF-PEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEE-------YDRLRPLSYPDV 73 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC-CCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchh-------HHHHHHHhCCCC
Confidence 689999999999999999997643 2344444433334445554 3 4689999999754 111122345789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHH-HHHHHHHhhhcccCCCCEEEEEeCCCcCCh--------HHHHHHHHHHcCCCC
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGA--------EEVYEELERRVQGVP 455 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~--------~e~~~~L~~~~~~~~ 455 (494)
|++++|+|+++ ..+++.+. .+..++..+. .+.|.|+|+||+|+... .+....+...+...+
T Consensus 74 d~ii~v~d~~~-------~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~ 143 (187)
T cd04132 74 DVLLICYAVDN-------PTSLDNVEDKWFPEVNHFC---PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFA 143 (187)
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHHhC---CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcE
Confidence 99999999987 34555553 3444444332 36899999999998652 222333444432237
Q ss_pred EEEEEcccCCCHHHHHHHHHHHhcccC
Q 011082 456 IYPVCAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 456 ii~ISA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
++++||+++.|+++++..+.+.+....
T Consensus 144 ~~e~Sa~~~~~v~~~f~~l~~~~~~~~ 170 (187)
T cd04132 144 YLECSAKTMENVEEVFDTAIEEALKKE 170 (187)
T ss_pred EEEccCCCCCCHHHHHHHHHHHHHhhh
Confidence 899999999999999999988776543
No 132
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.70 E-value=3e-16 Score=147.42 Aligned_cols=154 Identities=26% Similarity=0.297 Sum_probs=103.8
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhcee
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 387 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~l 387 (494)
+|.++|.+|||||||+++++.... . .+ .+|.......+.+.+..+.+|||||... +...+..+++.+|++
T Consensus 19 ki~ivG~~~~GKTsl~~~l~~~~~-~-~~-~pt~g~~~~~~~~~~~~~~i~D~~Gq~~-------~~~~~~~~~~~a~~i 88 (181)
T PLN00223 19 RILMVGLDAAGKTTILYKLKLGEI-V-TT-IPTIGFNVETVEYKNISFTVWDVGGQDK-------IRPLWRHYFQNTQGL 88 (181)
T ss_pred EEEEECCCCCCHHHHHHHHccCCC-c-cc-cCCcceeEEEEEECCEEEEEEECCCCHH-------HHHHHHHHhccCCEE
Confidence 799999999999999999985422 1 22 2333334445666778899999999743 333445567899999
Q ss_pred eEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHHc--C-----CCCEEEEE
Q 011082 388 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRV--Q-----GVPIYPVC 460 (494)
Q Consensus 388 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~--~-----~~~ii~IS 460 (494)
++|+|+++. +++......+..+.. ...+.+.|.+||+||+|+..... .+.+.+.+ . ...++++|
T Consensus 89 I~V~D~s~~-------~s~~~~~~~l~~~l~-~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~l~l~~~~~~~~~~~~~S 159 (181)
T PLN00223 89 IFVVDSNDR-------DRVVEARDELHRMLN-EDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTC 159 (181)
T ss_pred EEEEeCCcH-------HHHHHHHHHHHHHhc-CHhhCCCCEEEEEECCCCCCCCC-HHHHHHHhCccccCCCceEEEecc
Confidence 999999872 334333333222211 12335789999999999876432 22333332 1 12356799
Q ss_pred cccCCCHHHHHHHHHHHhcc
Q 011082 461 AVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~ 480 (494)
|++|+|+++++++|.+.+..
T Consensus 160 a~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 160 ATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999887654
No 133
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.70 E-value=3.1e-16 Score=144.90 Aligned_cols=152 Identities=19% Similarity=0.224 Sum_probs=104.4
Q ss_pred eeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhce
Q 011082 309 VGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 386 (494)
Q Consensus 309 V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ 386 (494)
|+++|.+|+|||||++++.+... ...|..++.......+.+++ ..+.+|||||..+... .....+..+|+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d~ 72 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF-PEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDR-------LRPLSYPDTDV 72 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC-CCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccch-------hchhhcCCCCE
Confidence 57999999999999999997643 23343343333344455555 4689999999765221 11234568999
Q ss_pred eeEEEecCCCCCCCCCCCCHHHHH-HHHHHHHhhhcccCCCCEEEEEeCCCcCChHH----------------HHHHHHH
Q 011082 387 LAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAEE----------------VYEELER 449 (494)
Q Consensus 387 ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e----------------~~~~L~~ 449 (494)
+|+|+|+++ ..+++.+. .+...+..+. .+.|+|+|+||+|+..... ....+.+
T Consensus 73 ~ilv~d~~~-------~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 142 (174)
T smart00174 73 FLICFSVDS-------PASFENVKEKWYPEVKHFC---PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAK 142 (174)
T ss_pred EEEEEECCC-------HHHHHHHHHHHHHHHHhhC---CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHH
Confidence 999999987 24555553 3555555432 3789999999999865221 1123444
Q ss_pred HcCCCCEEEEEcccCCCHHHHHHHHHHHh
Q 011082 450 RVQGVPIYPVCAVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 450 ~~~~~~ii~ISA~~g~gI~~L~~~I~~~l 478 (494)
......+++|||+++.|++++++.+.+.+
T Consensus 143 ~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 143 RIGAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred HcCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 44334789999999999999999998765
No 134
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.70 E-value=7.9e-16 Score=137.11 Aligned_cols=154 Identities=23% Similarity=0.188 Sum_probs=105.7
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+++|++|||||||+++|++.......++++|.+.....+.+++ ..+.++|+||..+.. .........+
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~ 74 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYR-------AIRRLYYRAV 74 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccch-------HHHHHHHhhh
Confidence 4799999999999999999999875556667777777777777777 778999999965421 1122335567
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHH-HHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH--HHHHHHHHHcCCCCEEEEEc
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQ-LRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE--EVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~-~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~--e~~~~L~~~~~~~~ii~ISA 461 (494)
+.++.++|+.... ..... ...+...+..+... +.|.++|+||+|+.... .............+++++||
T Consensus 75 ~~~i~~~d~~~~v------~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa 146 (161)
T TIGR00231 75 ESSLRVFDIVILV------LDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSA 146 (161)
T ss_pred hEEEEEEEEeeee------hhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeec
Confidence 7888888876531 11111 11222333332221 78999999999997642 22222223334567999999
Q ss_pred ccCCCHHHHHHHHH
Q 011082 462 VLEEGVPELKVGLR 475 (494)
Q Consensus 462 ~~g~gI~~L~~~I~ 475 (494)
.++.|++++++.|.
T Consensus 147 ~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 147 ETGKNIDSAFKIVE 160 (161)
T ss_pred CCCCCHHHHHHHhh
Confidence 99999999999874
No 135
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.70 E-value=6e-16 Score=142.70 Aligned_cols=155 Identities=19% Similarity=0.187 Sum_probs=105.9
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|.+|||||||++++.+... ...+..|+-......+.+++ ..+.+|||||..+. .......+..++
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~~~ 74 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVF-IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQF-------TAMRELYIKSGQ 74 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchheEEEEEEECCEEEEEEEEeCCCcccc-------hhhhHHHHhhCC
Confidence 589999999999999999986532 33343333333334444554 56789999997652 222234467789
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEEc
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~ISA 461 (494)
.+++|+|+++ ..+.+....+..++.... ...+.|.++|+||+|+.... +....+.+.+...+++++||
T Consensus 75 ~~vlv~~~~~-------~~s~~~~~~~~~~i~~~~-~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 146 (168)
T cd04177 75 GFLLVYSVTS-------EASLNELGELREQVLRIK-DSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSA 146 (168)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhh-CCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeC
Confidence 9999999987 345555665555554321 23478999999999986532 12223334443468999999
Q ss_pred ccCCCHHHHHHHHHHHh
Q 011082 462 VLEEGVPELKVGLRMLV 478 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l 478 (494)
+++.|+++++++|...+
T Consensus 147 ~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 147 RKRTNVDEVFIDLVRQI 163 (168)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998643
No 136
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.70 E-value=4.3e-16 Score=150.04 Aligned_cols=158 Identities=16% Similarity=0.172 Sum_probs=109.3
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeec-C--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD-D--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~-~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
+|+++|.+|+|||||+++|++........+..+.+.....+.+. + ..+.+|||||... +......++..+
T Consensus 4 KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~~ 76 (211)
T cd04111 4 RLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER-------FRSITRSYYRNS 76 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchh-------HHHHHHHHhcCC
Confidence 69999999999999999999865432222222233333344443 3 5688999999754 222234567789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii~IS 460 (494)
|++|+|+|+++ ..++..+..+..++..... ....|.++|+||+|+... .+....+.+.+ +.+++++|
T Consensus 77 d~iilv~D~~~-------~~Sf~~l~~~~~~i~~~~~-~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~S 147 (211)
T cd04111 77 VGVLLVFDITN-------RESFEHVHDWLEEARSHIQ-PHRPVFILVGHKCDLESQRQVTREEAEKLAKDL-GMKYIETS 147 (211)
T ss_pred cEEEEEEECCC-------HHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEccccccccccCHHHHHHHHHHh-CCEEEEEe
Confidence 99999999987 3566667777666654321 124567888999999653 22234444444 47899999
Q ss_pred cccCCCHHHHHHHHHHHhccc
Q 011082 461 AVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~~ 481 (494)
|++++|++++++.|.+.+.+.
T Consensus 148 ak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 148 ARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999998866543
No 137
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.70 E-value=3.3e-16 Score=176.01 Aligned_cols=162 Identities=19% Similarity=0.210 Sum_probs=120.0
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhH------H
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAF------L 378 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~f------l 378 (494)
..+|+|+|.+|||||||+|+|++.+. .+.++++||.++....+.+++..+.++||||+.+..... .+..+ .
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~--~~~e~~~~~r~~ 527 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKL--TGAEYYSSLRTQ 527 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccc--hhHHHHHHHHHH
Confidence 46899999999999999999999865 468899999999988888899899999999986533221 11122 3
Q ss_pred HHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH---HHHHHHHHc---C
Q 011082 379 RHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE---VYEELERRV---Q 452 (494)
Q Consensus 379 ~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e---~~~~L~~~~---~ 452 (494)
.+++.+|++++|+|+++. ....... +...+.. .++|+|+|+||+|+.+... ..+.+...+ +
T Consensus 528 ~~i~~advvilViDat~~-------~s~~~~~-i~~~~~~-----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~ 594 (712)
T PRK09518 528 AAIERSELALFLFDASQP-------ISEQDLK-VMSMAVD-----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVT 594 (712)
T ss_pred HHhhcCCEEEEEEECCCC-------CCHHHHH-HHHHHHH-----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCC
Confidence 456889999999999873 2233332 3333322 3689999999999976432 222333332 3
Q ss_pred CCCEEEEEcccCCCHHHHHHHHHHHhcccC
Q 011082 453 GVPIYPVCAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 453 ~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
..+++++||++|.|+++|++.+.+.+.++.
T Consensus 595 ~~~ii~iSAktg~gv~~L~~~i~~~~~~~~ 624 (712)
T PRK09518 595 WARRVNLSAKTGWHTNRLAPAMQEALESWD 624 (712)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 457899999999999999999998887643
No 138
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.70 E-value=4.3e-16 Score=146.85 Aligned_cols=160 Identities=19% Similarity=0.247 Sum_probs=105.5
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCC--CCcccccceeecceeeEEeecCcceEEecCCCccCCccc------cccchhh
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAK--PAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE------NRGLGHA 376 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~--~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~------~~~L~~~ 376 (494)
..++|+|+|.+|||||||+++|++.+ ..+...+++|..+.... . +..+.++||||+...... ...+...
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V-NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c-CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 45689999999999999999999864 34555666665544322 2 368999999997542111 0112223
Q ss_pred HHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH---HHHHHHHHcC-
Q 011082 377 FLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE---VYEELERRVQ- 452 (494)
Q Consensus 377 fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e---~~~~L~~~~~- 452 (494)
++.....++++++|+|.+... .... ..+...+.. ...|.++|+||+|+.+..+ ..+.+.+.+.
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~-------~~~~-~~i~~~l~~-----~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~ 166 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPL-------KELD-LQMIEWLKE-----YGIPVLIVLTKADKLKKGERKKQLKKVRKALKF 166 (196)
T ss_pred HHHhCccceEEEEEEecCCCC-------CHHH-HHHHHHHHH-----cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHh
Confidence 334444557888999977521 1111 122222221 3689999999999986532 2233444442
Q ss_pred -CCCEEEEEcccCCCHHHHHHHHHHHhcc
Q 011082 453 -GVPIYPVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 453 -~~~ii~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
..+++++||++++|++++++.|.+++.+
T Consensus 167 ~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 167 GDDEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 4689999999999999999999988765
No 139
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.70 E-value=3.2e-16 Score=144.93 Aligned_cols=157 Identities=15% Similarity=0.213 Sum_probs=108.2
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.+|+++|++|+|||||+++++.........+..+.+.....+.+++ ..+.+|||||..+... ......+..+
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~~~~~ 76 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRK------SMVQHYYRNV 76 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHH------hhHHHhhcCC
Confidence 3799999999999999999987543222222222233334455555 6789999999754110 1122345788
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++ ..++..+..+..++..+.. ..+.|+|+|+||+|+.... +....+.+.. ..+++++|
T Consensus 77 d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~e~S 147 (170)
T cd04115 77 HAVVFVYDVTN-------MASFHSLPSWIEECEQHSL-PNEVPRILVGNKCDLREQIQVPTDLAQRFADAH-SMPLFETS 147 (170)
T ss_pred CEEEEEEECCC-------HHHHHhHHHHHHHHHHhcC-CCCCCEEEEEECccchhhcCCCHHHHHHHHHHc-CCcEEEEe
Confidence 99999999987 3566777777777665432 2468999999999986432 2233444443 57899999
Q ss_pred ccc---CCCHHHHHHHHHHHh
Q 011082 461 AVL---EEGVPELKVGLRMLV 478 (494)
Q Consensus 461 A~~---g~gI~~L~~~I~~~l 478 (494)
|++ +.++++++..+.+.+
T Consensus 148 a~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 148 AKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred ccCCcCCCCHHHHHHHHHHHh
Confidence 999 889999999887765
No 140
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.70 E-value=1.8e-16 Score=146.36 Aligned_cols=151 Identities=26% Similarity=0.289 Sum_probs=100.3
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhce
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 386 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ 386 (494)
.+|+|+|++|||||||+++|++..... ...|.......+.+++..+.++|+||... +...+...++.+|+
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~~~~~---~~~t~g~~~~~i~~~~~~~~~~D~~G~~~-------~~~~~~~~~~~~~~ 84 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASEDISH---ITPTQGFNIKTVQSDGFKLNVWDIGGQRA-------IRPYWRNYFENTDC 84 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcCCCcc---cCCCCCcceEEEEECCEEEEEEECCCCHH-------HHHHHHHHhcCCCE
Confidence 479999999999999999999863211 11222223336777788899999999743 33344556788999
Q ss_pred eeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHHc-------CCCCEEEE
Q 011082 387 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRV-------QGVPIYPV 459 (494)
Q Consensus 387 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~-------~~~~ii~I 459 (494)
+++|+|+++. .........+..+.... .....|+++++||+|+...... +.+.+.+ ....++++
T Consensus 85 ii~v~D~~~~-------~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~-~~i~~~l~~~~~~~~~~~~~~~ 155 (173)
T cd04155 85 LIYVIDSADK-------KRLEEAGAELVELLEEE-KLAGVPVLVFANKQDLATAAPA-EEIAEALNLHDLRDRTWHIQAC 155 (173)
T ss_pred EEEEEeCCCH-------HHHHHHHHHHHHHHhCh-hhcCCCEEEEEECCCCccCCCH-HHHHHHcCCcccCCCeEEEEEe
Confidence 9999999862 22333333333322211 1236899999999998764221 1222222 11247899
Q ss_pred EcccCCCHHHHHHHHHH
Q 011082 460 CAVLEEGVPELKVGLRM 476 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~ 476 (494)
||++++|+++++++|.+
T Consensus 156 Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 156 SAKTGEGLQEGMNWVCK 172 (173)
T ss_pred ECCCCCCHHHHHHHHhc
Confidence 99999999999999864
No 141
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.69 E-value=3.3e-16 Score=147.19 Aligned_cols=156 Identities=26% Similarity=0.292 Sum_probs=103.7
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhce
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 386 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ 386 (494)
.+|+|+|++|+|||||++++..... . .+. +|.......+...+..+.++||||... +...+..+++.+|+
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~-~-~~~-~T~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~ad~ 87 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEV-V-TTI-PTIGFNVETVEYKNLKFTMWDVGGQDK-------LRPLWRHYYQNTNG 87 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc-c-ccC-CccccceEEEEECCEEEEEEECCCCHh-------HHHHHHHHhcCCCE
Confidence 3799999999999999999965422 1 222 233444445666778899999999754 22334456789999
Q ss_pred eeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh---HHHHHHHHHH-cC--CCCEEEEE
Q 011082 387 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERR-VQ--GVPIYPVC 460 (494)
Q Consensus 387 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~---~e~~~~L~~~-~~--~~~ii~IS 460 (494)
+|+|+|+++ ...+......+.++.. ...+.+.|+|+|+||.|+... .++...+... .. ...++++|
T Consensus 88 iI~v~D~t~-------~~s~~~~~~~l~~~~~-~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~S 159 (182)
T PTZ00133 88 LIFVVDSND-------RERIGDAREELERMLS-EDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCC 159 (182)
T ss_pred EEEEEeCCC-------HHHHHHHHHHHHHHHh-CHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeee
Confidence 999999986 2334444433333321 112346899999999998653 2222222110 11 12456899
Q ss_pred cccCCCHHHHHHHHHHHhcc
Q 011082 461 AVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~ 480 (494)
|++|+|+++++++|.+.+..
T Consensus 160 a~tg~gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 160 ATTAQGLYEGLDWLSANIKK 179 (182)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887654
No 142
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.69 E-value=2.9e-16 Score=146.83 Aligned_cols=147 Identities=18% Similarity=0.255 Sum_probs=95.9
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCC--CCcccccceeecceeeEEeecCcceEEecCCCccCCcccc------ccchhhH
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAK--PAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN------RGLGHAF 377 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~--~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~------~~L~~~f 377 (494)
.++|+|+|.+|+|||||+|+|++.. ..+...+++|.++....+ + ..+.++||||+....... ..+...+
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 94 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEY 94 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHHHHHHHH
Confidence 4589999999999999999999874 345666777766554332 3 379999999986532110 1111223
Q ss_pred HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH---HHHHHHHHcC--
Q 011082 378 LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE---VYEELERRVQ-- 452 (494)
Q Consensus 378 l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e---~~~~L~~~~~-- 452 (494)
++....++++++|+|++... . .....+...+.. ...|+++|+||+|+....+ ..+.+++.+.
T Consensus 95 l~~~~~~~~ii~vvd~~~~~-------~-~~~~~~~~~~~~-----~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~ 161 (179)
T TIGR03598 95 LEKRENLKGVVLLMDIRHPL-------K-ELDLEMLEWLRE-----RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD 161 (179)
T ss_pred HHhChhhcEEEEEecCCCCC-------C-HHHHHHHHHHHH-----cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc
Confidence 33334568999999987631 1 222223333322 3689999999999976432 3344444442
Q ss_pred --CCCEEEEEcccCCCHH
Q 011082 453 --GVPIYPVCAVLEEGVP 468 (494)
Q Consensus 453 --~~~ii~ISA~~g~gI~ 468 (494)
..++|++||++++|++
T Consensus 162 ~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 162 ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred cCCCceEEEECCCCCCCC
Confidence 3489999999999974
No 143
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.69 E-value=4.4e-16 Score=144.40 Aligned_cols=156 Identities=19% Similarity=0.139 Sum_probs=106.7
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecc-eeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHH
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRP-NLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIE 382 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p-~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~ 382 (494)
..+|+++|.+|||||||++++++....+.+|..|+-.. ....+.+++ ..+.++|++|.... ......+++
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-------~~~~~~~~~ 76 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVA-------ILLNDAELA 76 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccc-------cccchhhhh
Confidence 34799999999999999999998654325555544322 234456666 56788999987652 112234578
Q ss_pred hhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH----HHHHHHHHcCCCCEEE
Q 011082 383 RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE----VYEELERRVQGVPIYP 458 (494)
Q Consensus 383 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e----~~~~L~~~~~~~~ii~ 458 (494)
.+|++|+|+|+++ ..++..+..+...+. ...+.|+++|+||+|+..... ..+.+.+.+.-..+++
T Consensus 77 ~~d~~llv~d~~~-------~~s~~~~~~~~~~~~----~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (169)
T cd01892 77 ACDVACLVYDSSD-------PKSFSYCAEVYKKYF----MLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLH 145 (169)
T ss_pred cCCEEEEEEeCCC-------HHHHHHHHHHHHHhc----cCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEE
Confidence 9999999999976 233444444443331 123689999999999964321 2244555443224689
Q ss_pred EEcccCCCHHHHHHHHHHHhc
Q 011082 459 VCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 459 ISA~~g~gI~~L~~~I~~~l~ 479 (494)
+||+++.|++++++.|.+.+.
T Consensus 146 ~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 146 FSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred EEeccCccHHHHHHHHHHHhh
Confidence 999999999999999988764
No 144
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.69 E-value=4.2e-16 Score=143.59 Aligned_cols=153 Identities=14% Similarity=0.116 Sum_probs=102.8
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeec--CcceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD--DIQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~--~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|.+|||||||+++|.+.+.. ..++. |.....-...+. +..+.+|||||..+ ....+...+..+|
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~ad 72 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP-ENVPR-VLPEITIPADVTPERVPTTIVDTSSRPQ-------DRANLAAEIRKAN 72 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC-ccCCC-cccceEeeeeecCCeEEEEEEeCCCchh-------hhHHHhhhcccCC
Confidence 6899999999999999999876432 23332 222222222332 36789999999754 1123445568899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHH-HHHHHHHhhhcccCCCCEEEEEeCCCcCChHH------HHHHHHHHcCC-CCEE
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAEE------VYEELERRVQG-VPIY 457 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e------~~~~L~~~~~~-~~ii 457 (494)
++++|+|+++ ..++..+. .|...+..+. .+.|+++|+||+|+.+... ....+...+.. .+++
T Consensus 73 ~~ilv~d~~~-------~~s~~~~~~~~~~~i~~~~---~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (166)
T cd01893 73 VICLVYSVDR-------PSTLERIRTKWLPLIRRLG---VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCV 142 (166)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEE
Confidence 9999999887 24455543 3444454432 2689999999999975432 12222233322 3799
Q ss_pred EEEcccCCCHHHHHHHHHHHhc
Q 011082 458 PVCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 458 ~ISA~~g~gI~~L~~~I~~~l~ 479 (494)
++||+++.|++++++.+.+.+-
T Consensus 143 e~Sa~~~~~v~~lf~~~~~~~~ 164 (166)
T cd01893 143 ECSAKTLINVSEVFYYAQKAVL 164 (166)
T ss_pred EeccccccCHHHHHHHHHHHhc
Confidence 9999999999999999987653
No 145
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.69 E-value=4.2e-16 Score=147.13 Aligned_cols=156 Identities=19% Similarity=0.204 Sum_probs=105.5
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+|+|.+|||||||++++++.... ..|..|........+..++ ..+.+|||+|...... + ...++..+|
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~----l---~~~~~~~a~ 73 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFP-QVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDR----L---RSLSYADTD 73 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CccCCcceeeeEEEEEECCEEEEEEEEECCCChhccc----c---ccccccCCC
Confidence 6899999999999999999876432 2233332223333444454 5689999999854211 1 112467899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHH-HHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHH----------------HHHH
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVY----------------EELE 448 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~----------------~~L~ 448 (494)
++++|+|+++ ..++..+. .++.++..+. .+.|+|+|+||+|+....+.. ..+.
T Consensus 74 ~~ilv~dv~~-------~~sf~~~~~~~~~~i~~~~---~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 143 (189)
T cd04134 74 VIMLCFSVDS-------PDSLENVESKWLGEIREHC---PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVA 143 (189)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHH
Confidence 9999999987 34555554 3555555432 368999999999997543211 1222
Q ss_pred HHcCCCCEEEEEcccCCCHHHHHHHHHHHhccc
Q 011082 449 RRVQGVPIYPVCAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 449 ~~~~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~ 481 (494)
+......++++||+++.|+++++++|.+.+...
T Consensus 144 ~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~~ 176 (189)
T cd04134 144 KRINALRYLECSAKLNRGVNEAFTEAARVALNV 176 (189)
T ss_pred HHcCCCEEEEccCCcCCCHHHHHHHHHHHHhcc
Confidence 222335789999999999999999999877543
No 146
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.69 E-value=6.9e-16 Score=145.16 Aligned_cols=157 Identities=13% Similarity=0.162 Sum_probs=107.4
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCccccccee-ecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTT-LRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftT-l~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
+|+++|.+|+|||||++++..... ..+|..|. .+.....+.+++ ..+.+|||+|... +......++..+
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f-~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~-------~~~~~~~~~~~a 73 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEF-DEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE-------FINMLPLVCNDA 73 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchh-------HHHhhHHHCcCC
Confidence 589999999999999999987533 23333222 122233456665 5689999999754 222223456789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCC----hH--HHH---HHHHHHcCCCC
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDG----AE--EVY---EELERRVQGVP 455 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~----~~--e~~---~~L~~~~~~~~ 455 (494)
|++++|+|+++ ..++..+..+..++..+.+ ...| |+|+||+|+.. .+ ... ..+.+.. +.+
T Consensus 74 ~~iilv~D~t~-------~~s~~~i~~~~~~~~~~~~--~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~-~~~ 142 (182)
T cd04128 74 VAILFMFDLTR-------KSTLNSIKEWYRQARGFNK--TAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAM-KAP 142 (182)
T ss_pred CEEEEEEECcC-------HHHHHHHHHHHHHHHHhCC--CCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHc-CCE
Confidence 99999999987 3566777777777665432 2345 78899999952 11 112 2233333 468
Q ss_pred EEEEEcccCCCHHHHHHHHHHHhcccCC
Q 011082 456 IYPVCAVLEEGVPELKVGLRMLVNGEKS 483 (494)
Q Consensus 456 ii~ISA~~g~gI~~L~~~I~~~l~~~~~ 483 (494)
++++||+++.|++++++++.+.+.+.+.
T Consensus 143 ~~e~SAk~g~~v~~lf~~l~~~l~~~~~ 170 (182)
T cd04128 143 LIFCSTSHSINVQKIFKIVLAKAFDLPL 170 (182)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999987765443
No 147
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.69 E-value=5e-16 Score=150.46 Aligned_cols=154 Identities=16% Similarity=0.147 Sum_probs=106.3
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecce--eeEEeecC--cceEEecCCCccCCccccccchhhHHHHHH
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPN--LGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIE 382 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~--~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~ 382 (494)
.+|++||.+|+|||||+++++..... ..|. +|+... .-.+..++ ..+.+|||+|.... ......++.
T Consensus 14 ~Ki~vvG~~gvGKTsli~~~~~~~f~-~~~~-~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~ 84 (219)
T PLN03071 14 FKLVIVGDGGTGKTTFVKRHLTGEFE-KKYE-PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-------GGLRDGYYI 84 (219)
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCC-CccC-CccceeEEEEEEEECCeEEEEEEEECCCchhh-------hhhhHHHcc
Confidence 37999999999999999998755322 1221 222222 22233333 67899999998652 112233567
Q ss_pred hhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH---HHHHHHHHHcCCCCEEEE
Q 011082 383 RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYPV 459 (494)
Q Consensus 383 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~---e~~~~L~~~~~~~~ii~I 459 (494)
.++++|+|+|+++ ..++..+..|..++..+. .+.|+++|+||+|+.... +.. .+.+. .+.+++++
T Consensus 85 ~~~~~ilvfD~~~-------~~s~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~~~v~~~~~-~~~~~-~~~~~~e~ 152 (219)
T PLN03071 85 HGQCAIIMFDVTA-------RLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQV-TFHRK-KNLQYYEI 152 (219)
T ss_pred cccEEEEEEeCCC-------HHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhhhhccCCHHHH-HHHHh-cCCEEEEc
Confidence 8999999999997 356677777777776543 468999999999986432 112 22222 35679999
Q ss_pred EcccCCCHHHHHHHHHHHhccc
Q 011082 460 CAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~~ 481 (494)
||+++.|+++++.+|...+.+.
T Consensus 153 SAk~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 153 SAKSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred CCCCCCCHHHHHHHHHHHHHcC
Confidence 9999999999999998877543
No 148
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.68 E-value=9.1e-16 Score=145.34 Aligned_cols=143 Identities=22% Similarity=0.280 Sum_probs=96.6
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCC-CCccc---------------ccceeecceeeEEeecCcceEEecCCCccCCcccc
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAK-PAVGH---------------YSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN 370 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~-~~i~~---------------~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~ 370 (494)
.+|+++|.+|+|||||+++|+... ..... ...+|.......+...+..+.++||||+.+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~----- 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD----- 77 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH-----
Confidence 479999999999999999998631 11111 133445555556666778899999999865
Q ss_pred ccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh--HHHHHHHH
Q 011082 371 RGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYEELE 448 (494)
Q Consensus 371 ~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~--~e~~~~L~ 448 (494)
+.......+..+|++++|+|+++. +......++..+.. ...|.++|+||+|+... ....+.+.
T Consensus 78 --~~~~~~~~~~~~d~~ilV~d~~~~--------~~~~~~~~~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~ 142 (194)
T cd01891 78 --FGGEVERVLSMVDGVLLLVDASEG--------PMPQTRFVLKKALE-----LGLKPIVVINKIDRPDARPEEVVDEVF 142 (194)
T ss_pred --HHHHHHHHHHhcCEEEEEEECCCC--------ccHHHHHHHHHHHH-----cCCCEEEEEECCCCCCCCHHHHHHHHH
Confidence 333455678899999999999862 22333333333322 26899999999999643 22333333
Q ss_pred HHc---------CCCCEEEEEcccCCCHHH
Q 011082 449 RRV---------QGVPIYPVCAVLEEGVPE 469 (494)
Q Consensus 449 ~~~---------~~~~ii~ISA~~g~gI~~ 469 (494)
+.+ .+.+++++||++|.|+.+
T Consensus 143 ~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 143 DLFIELGATEEQLDFPVLYASAKNGWASLN 172 (194)
T ss_pred HHHHHhCCccccCccCEEEeehhccccccc
Confidence 332 156899999999987744
No 149
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.68 E-value=8.2e-16 Score=144.06 Aligned_cols=152 Identities=18% Similarity=0.215 Sum_probs=108.8
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|.+++|||||+.++..... ..+|..|.-+.....+.+++ ..+.+|||+|..+... ....+++.++
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f-~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~-------~~~~~~~~a~ 74 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNR-------LRPLSYRGAD 74 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC-CCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccc-------cchhhcCCCc
Confidence 689999999999999999997543 33343333233333445555 6789999999865221 1223577899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHH-HHHHHHHHhhhcccCCCCEEEEEeCCCcCChH--------------HHHHHHHHH
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQL-RDLIIELEHHQEGLSDRPSLVVANKIDEDGAE--------------EVYEELERR 450 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~-~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~--------------e~~~~L~~~ 450 (494)
++|+|+|+++ ..+++.+ ..|..++..+. .+.|.|+|+||+|+.+.. +....+.+.
T Consensus 75 ~~ilvyd~~~-------~~Sf~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~ 144 (176)
T cd04133 75 VFVLAFSLIS-------RASYENVLKKWVPELRHYA---PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQ 144 (176)
T ss_pred EEEEEEEcCC-------HHHHHHHHHHHHHHHHHhC---CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHH
Confidence 9999999998 4667776 56777776653 368999999999995421 122334443
Q ss_pred cCCC-CEEEEEcccCCCHHHHHHHHHHHh
Q 011082 451 VQGV-PIYPVCAVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 451 ~~~~-~ii~ISA~~g~gI~~L~~~I~~~l 478 (494)
. +. .++++||+++.||+++++.+.+.+
T Consensus 145 ~-~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 145 I-GAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred c-CCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 3 34 589999999999999999999876
No 150
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.68 E-value=1.1e-15 Score=148.17 Aligned_cols=153 Identities=20% Similarity=0.135 Sum_probs=104.8
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhcee
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 387 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~l 387 (494)
+|++||.+|||||||++++...+.. .+ .+|+........+....+.+|||||.... ......++..+|++
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~--~~-~~Tig~~~~~~~~~~~~l~iwDt~G~e~~-------~~l~~~~~~~ad~~ 71 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFK--DT-VSTVGGAFYLKQWGPYNISIWDTAGREQF-------HGLGSMYCRGAAAV 71 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC--CC-CCccceEEEEEEeeEEEEEEEeCCCcccc-------hhhHHHHhccCCEE
Confidence 5899999999999999999876432 12 22333322223344467899999998542 11223457789999
Q ss_pred eEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCC-------------------h----HHHH
Q 011082 388 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDG-------------------A----EEVY 444 (494)
Q Consensus 388 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~-------------------~----~e~~ 444 (494)
|+|+|+++ ..++..+..++..+... ...+.|+|+|+||+|+.+ . .+..
T Consensus 72 IlV~Dvt~-------~~Sf~~l~~~~~~l~~~--~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~ 142 (220)
T cd04126 72 ILTYDVSN-------VQSLEELEDRFLGLTDT--ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDA 142 (220)
T ss_pred EEEEECCC-------HHHHHHHHHHHHHHHHh--cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHH
Confidence 99999997 35666666666555443 224679999999999965 1 1122
Q ss_pred HHHHHHcC-------------CCCEEEEEcccCCCHHHHHHHHHHHhc
Q 011082 445 EELERRVQ-------------GVPIYPVCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 445 ~~L~~~~~-------------~~~ii~ISA~~g~gI~~L~~~I~~~l~ 479 (494)
..+.+... ..+++++||++|.||++++..+.+.+.
T Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 143 KAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred HHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 23333322 257899999999999999999987654
No 151
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.68 E-value=7.2e-16 Score=142.56 Aligned_cols=153 Identities=19% Similarity=0.231 Sum_probs=103.1
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|++|||||||++++.+... ...|..|+.......+.+++ ..+.+|||||..+... + ....+..+|
T Consensus 3 ki~iiG~~~~GKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~---~~~~~~~~d 74 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR----L---RPLSYPDTD 74 (175)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhh----c---cccccCCCC
Confidence 699999999999999999997532 23344444444445566655 4678999999754211 1 112457789
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHH-HHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHH----------------HHHH
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVY----------------EELE 448 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~----------------~~L~ 448 (494)
++++|+|+++ ..++..+. .+..++..+ ..+.|+++|+||+|+....... ..+.
T Consensus 75 ~~i~v~~~~~-------~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~ 144 (175)
T cd01870 75 VILMCFSIDS-------PDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA 144 (175)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhh---CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHH
Confidence 9999999986 24444443 344444433 2478999999999986532211 1222
Q ss_pred HHcCCCCEEEEEcccCCCHHHHHHHHHHHh
Q 011082 449 RRVQGVPIYPVCAVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 449 ~~~~~~~ii~ISA~~g~gI~~L~~~I~~~l 478 (494)
+.....+++++||+++.|+++++++|.+..
T Consensus 145 ~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 145 NKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred HHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 222334799999999999999999997653
No 152
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.68 E-value=4.7e-16 Score=143.00 Aligned_cols=145 Identities=21% Similarity=0.236 Sum_probs=96.4
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhcee
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 387 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~l 387 (494)
+|+++|.+|+|||||+|+|++.... ....+.+.+... .++||||+..... .+...+...+..+|++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~---------~~~~~~v~~~~~--~~iDtpG~~~~~~---~~~~~~~~~~~~ad~i 68 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL---------ARKTQAVEFNDK--GDIDTPGEYFSHP---RWYHALITTLQDVDML 68 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc---------CccceEEEECCC--CcccCCccccCCH---HHHHHHHHHHhcCCEE
Confidence 6999999999999999999986321 123344444433 2699999864221 1333445567899999
Q ss_pred eEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH--HHHHHHHHHcCCCCEEEEEcccCC
Q 011082 388 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE--EVYEELERRVQGVPIYPVCAVLEE 465 (494)
Q Consensus 388 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~--e~~~~L~~~~~~~~ii~ISA~~g~ 465 (494)
++|+|++.... . ...++.+ + ...+|.++++||+|+...+ ...+.+.+.....+++++||++++
T Consensus 69 l~v~d~~~~~s-------~--~~~~~~~---~---~~~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~~~~p~~~~Sa~~g~ 133 (158)
T PRK15467 69 IYVHGANDPES-------R--LPAGLLD---I---GVSKRQIAVISKTDMPDADVAATRKLLLETGFEEPIFELNSHDPQ 133 (158)
T ss_pred EEEEeCCCccc-------c--cCHHHHh---c---cCCCCeEEEEEccccCcccHHHHHHHHHHcCCCCCEEEEECCCcc
Confidence 99999986311 1 1111111 1 1267999999999986532 222222222223589999999999
Q ss_pred CHHHHHHHHHHHhccc
Q 011082 466 GVPELKVGLRMLVNGE 481 (494)
Q Consensus 466 gI~~L~~~I~~~l~~~ 481 (494)
|+++|++.|.+.+.+.
T Consensus 134 gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 134 SVQQLVDYLASLTKQE 149 (158)
T ss_pred CHHHHHHHHHHhchhh
Confidence 9999999999887543
No 153
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.68 E-value=5.5e-16 Score=150.38 Aligned_cols=155 Identities=19% Similarity=0.208 Sum_probs=106.7
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceee-cceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHH-h
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTL-RPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIE-R 383 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl-~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~-~ 383 (494)
+|+++|.+|+|||||+++++........|..+.- +.....+.+++ ..+.+|||||... .+.. ..+. .
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~------~~~~---~~~~~~ 72 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM------WTED---SCMQYQ 72 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch------HHHh---HHhhcC
Confidence 6899999999999999999755332223322211 23333445544 6789999999861 1111 1234 7
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH----HHHHHHHHcCCCCEEEE
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE----VYEELERRVQGVPIYPV 459 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e----~~~~L~~~~~~~~ii~I 459 (494)
+|++++|+|+++ ..++.....++.++..+. ...+.|+|+|+||+|+..... ....+...+ +.+++++
T Consensus 73 ad~iilV~d~td-------~~S~~~~~~~~~~l~~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~-~~~~~e~ 143 (221)
T cd04148 73 GDAFVVVYSVTD-------RSSFERASELRIQLRRNR-QLEDRPIILVGNKSDLARSREVSVQEGRACAVVF-DCKFIET 143 (221)
T ss_pred CCEEEEEEECCC-------HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhccccceecHHHHHHHHHHc-CCeEEEe
Confidence 999999999987 355666666766665542 234789999999999865321 122333333 5689999
Q ss_pred EcccCCCHHHHHHHHHHHhcc
Q 011082 460 CAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~ 480 (494)
||+++.||+++++.|...+..
T Consensus 144 SA~~~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 144 SAGLQHNVDELLEGIVRQIRL 164 (221)
T ss_pred cCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999988753
No 154
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.68 E-value=8.9e-16 Score=143.15 Aligned_cols=152 Identities=18% Similarity=0.220 Sum_probs=102.4
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|.+|+|||||+.++.... ....|..|..+...-.+.+++ ..+.+|||||..... .....++..+|
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~d 74 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTNA-FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-------RLRPLSYPQTD 74 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhh-------hhhhhhcCCCC
Confidence 68999999999999999998643 233443333222222344444 568899999975421 11223467899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHH-HHHHHHHhhhcccCCCCEEEEEeCCCcCChHH----------------HHHHHH
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAEE----------------VYEELE 448 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e----------------~~~~L~ 448 (494)
++|+|+|+++ ..++..+. .+...+.... .+.|.|+|+||+|+..... ....+.
T Consensus 75 ~~ilv~d~~~-------~~sf~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 144 (174)
T cd01871 75 VFLICFSLVS-------PASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 144 (174)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHH
Confidence 9999999987 35566554 3555554432 3689999999999964321 112233
Q ss_pred HHcCCCCEEEEEcccCCCHHHHHHHHHHH
Q 011082 449 RRVQGVPIYPVCAVLEEGVPELKVGLRML 477 (494)
Q Consensus 449 ~~~~~~~ii~ISA~~g~gI~~L~~~I~~~ 477 (494)
+.+...+++++||++++|++++++.+.+.
T Consensus 145 ~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 145 KEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred HHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 33433578999999999999999998763
No 155
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=3.9e-16 Score=144.64 Aligned_cols=161 Identities=17% Similarity=0.248 Sum_probs=124.5
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHH
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHI 381 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i 381 (494)
.-..+|.|+|..|+|||.|+.+++.......-...-.++.....+.+++ ..+.+|||.|..+ +...+.+++
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQER-------Frtit~syY 79 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQER-------FRTITSSYY 79 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHH-------HhhhhHhhc
Confidence 4456899999999999999999987633211111122455567777877 5689999999966 445567888
Q ss_pred HhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCC-E
Q 011082 382 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVP-I 456 (494)
Q Consensus 382 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~-i 456 (494)
+.|+.+|+|+|+++ ..++..+..|+.|+..|.. .+.|.++|.||+|+.+.. +..+.+...+ +.+ +
T Consensus 80 R~ahGii~vyDiT~-------~~SF~~v~~Wi~Ei~~~~~--~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~-~~~~f 149 (205)
T KOG0084|consen 80 RGAHGIIFVYDITK-------QESFNNVKRWIQEIDRYAS--ENVPKLLVGNKCDLTEKRVVSTEEAQEFADEL-GIPIF 149 (205)
T ss_pred cCCCeEEEEEEccc-------HHHhhhHHHHHHHhhhhcc--CCCCeEEEeeccccHhheecCHHHHHHHHHhc-CCcce
Confidence 99999999999998 5789999999999998853 468999999999998653 2233444444 455 9
Q ss_pred EEEEcccCCCHHHHHHHHHHHhccc
Q 011082 457 YPVCAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 457 i~ISA~~g~gI~~L~~~I~~~l~~~ 481 (494)
+++||++..++++.|..|...+...
T Consensus 150 ~ETSAK~~~NVe~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 150 LETSAKDSTNVEDAFLTLAKELKQR 174 (205)
T ss_pred eecccCCccCHHHHHHHHHHHHHHh
Confidence 9999999999999999998877654
No 156
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.67 E-value=1.2e-15 Score=143.08 Aligned_cols=152 Identities=15% Similarity=0.137 Sum_probs=106.7
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|.+|+|||||++++.+... ..+|..|........+.+++ ..+.+|||+|...... ....++..+|
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~-------~~~~~~~~a~ 74 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCY-PETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDN-------VRPLCYPDSD 74 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhh-------cchhhcCCCC
Confidence 689999999999999999987632 33444333222333445555 5688999999754211 1123467899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHH-HHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----------------HHHHHHHH
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQL-RDLIIELEHHQEGLSDRPSLVVANKIDEDGA----------------EEVYEELE 448 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~-~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----------------~e~~~~L~ 448 (494)
++|+|+|+++ ..+++.+ ..|..++..+.+ +.|+|+|+||+|+... .+..+.+.
T Consensus 75 ~~ilvfdit~-------~~Sf~~~~~~w~~~i~~~~~---~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a 144 (178)
T cd04131 75 AVLICFDISR-------PETLDSVLKKWRGEIQEFCP---NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIA 144 (178)
T ss_pred EEEEEEECCC-------hhhHHHHHHHHHHHHHHHCC---CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHH
Confidence 9999999987 4667774 677777776543 6899999999998531 12233444
Q ss_pred HHcCCCCEEEEEcccCCC-HHHHHHHHHHH
Q 011082 449 RRVQGVPIYPVCAVLEEG-VPELKVGLRML 477 (494)
Q Consensus 449 ~~~~~~~ii~ISA~~g~g-I~~L~~~I~~~ 477 (494)
+.+.-..++++||+++++ |++++..+.+.
T Consensus 145 ~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 145 KQLGAEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred HHhCCCEEEECccCcCCcCHHHHHHHHHHH
Confidence 444223789999999995 99999998874
No 157
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.67 E-value=8e-16 Score=141.21 Aligned_cols=151 Identities=21% Similarity=0.256 Sum_probs=98.3
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|.+|||||||+++|++.... ..+..+..+.....+..++ ..+.++||||..+... + ....+..+|
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~----~---~~~~~~~~~ 73 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFP-TEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDR----L---RPLSYPNTD 73 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc----c---chhhcCCCC
Confidence 5899999999999999999987542 2222222222222333333 5689999999875211 1 112346799
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHH-HHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHH---------------HHHHHH
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQL-RDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV---------------YEELER 449 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~-~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~---------------~~~L~~ 449 (494)
++++|+|+++. .+.... ..+...+..+. .+.|+++|+||+|+...... ...+..
T Consensus 74 ~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~ 143 (171)
T cd00157 74 VFLICFSVDSP-------SSFENVKTKWIPEIRHYC---PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAK 143 (171)
T ss_pred EEEEEEECCCH-------HHHHHHHHHHHHHHHhhC---CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHH
Confidence 99999998862 233322 23444444332 37999999999998755422 112222
Q ss_pred HcCCCCEEEEEcccCCCHHHHHHHHHH
Q 011082 450 RVQGVPIYPVCAVLEEGVPELKVGLRM 476 (494)
Q Consensus 450 ~~~~~~ii~ISA~~g~gI~~L~~~I~~ 476 (494)
.....+++++||+++.|++++++.|.+
T Consensus 144 ~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 144 EIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 223338999999999999999999875
No 158
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.67 E-value=1.4e-15 Score=143.95 Aligned_cols=155 Identities=20% Similarity=0.212 Sum_probs=105.7
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|..|||||||+.++..... ...|..|.-+.....+.+++ ..+.+|||+|..+.. .....++..+|
T Consensus 5 ki~~vG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~-------~l~~~~~~~a~ 76 (191)
T cd01875 5 KCVVVGDGAVGKTCLLICYTTNAF-PKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYD-------RLRTLSYPQTN 76 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhh-------hhhhhhccCCC
Confidence 699999999999999999986532 22333332222222334444 568999999986522 12223567899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHH-HHHHHHHhhhcccCCCCEEEEEeCCCcCChHH----------------HHHHHH
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAEE----------------VYEELE 448 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e----------------~~~~L~ 448 (494)
++|+|+|+++ ..+++.+. .|..++..+ ..+.|+|+|+||+|+.+... ..+.+.
T Consensus 77 ~~ilvydit~-------~~Sf~~~~~~w~~~i~~~---~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a 146 (191)
T cd01875 77 VFIICFSIAS-------PSSYENVRHKWHPEVCHH---CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALA 146 (191)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhh---CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHH
Confidence 9999999987 35666665 355555443 24789999999999965321 112233
Q ss_pred HHcCCCCEEEEEcccCCCHHHHHHHHHHHhcc
Q 011082 449 RRVQGVPIYPVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 449 ~~~~~~~ii~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
+.....+++++||++++||++++..|.+.+..
T Consensus 147 ~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 147 KQIHAVKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred HHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 33323579999999999999999999987654
No 159
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.67 E-value=1.2e-15 Score=140.87 Aligned_cols=153 Identities=15% Similarity=0.167 Sum_probs=102.1
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|++|+|||||++++..... ...+..++.+.....+.+++ ..+.+|||||...... + ....+..+|
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~---~~~~~~~~~ 73 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR----L---RPLSYPMTD 73 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc----c---ccccCCCCC
Confidence 589999999999999999987643 23343343333334455565 4467999999755211 1 112356789
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHH-HHHHHHHhhhcccCCCCEEEEEeCCCcCChHHH----------------HHHHH
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV----------------YEELE 448 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~----------------~~~L~ 448 (494)
++++|+|+++ ..++..+. .+...+... ..+.|+++|+||+|+.+.... ...+.
T Consensus 74 ~~ilv~~~~~-------~~s~~~~~~~~~~~l~~~---~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 143 (174)
T cd04135 74 VFLICFSVVN-------PASFQNVKEEWVPELKEY---APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLA 143 (174)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhh---CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHH
Confidence 9999999987 24454443 344444433 347899999999998643211 12233
Q ss_pred HHcCCCCEEEEEcccCCCHHHHHHHHHHHh
Q 011082 449 RRVQGVPIYPVCAVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 449 ~~~~~~~ii~ISA~~g~gI~~L~~~I~~~l 478 (494)
+.+...++++|||+++.|++++++.+.+.+
T Consensus 144 ~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 144 KEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred HHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 333334689999999999999999987653
No 160
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.67 E-value=3.4e-16 Score=135.92 Aligned_cols=113 Identities=28% Similarity=0.524 Sum_probs=90.2
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCCccccc--cchhhHHHHHHhh
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENR--GLGHAFLRHIERT 384 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~--~L~~~fl~~i~~a 384 (494)
+|+|+|.+|||||||+|+|++.+. .+++++++|..+..+.+.+++..+.++||||+.+...... .....+++.+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 589999999999999999998743 6788999999998888888999999999999987654332 1344577888899
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeC
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANK 434 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNK 434 (494)
|++++|+|.+. ...+....++.+|. ..+|.++|+||
T Consensus 81 d~ii~vv~~~~--------~~~~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASN--------PITEDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTS--------HSHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred CEEEEEEECCC--------CCCHHHHHHHHHHh------cCCCEEEEEcC
Confidence 99999999654 12345556666662 37999999998
No 161
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.67 E-value=1.4e-15 Score=145.61 Aligned_cols=155 Identities=23% Similarity=0.255 Sum_probs=99.3
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCC-C-ccc-ccceeecceeeEEee---------------------------------c
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKP-A-VGH-YSFTTLRPNLGNMNF---------------------------------D 351 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~-~-i~~-~~ftTl~p~~g~v~~---------------------------------~ 351 (494)
.||++|.+++|||||+.+|++... . ... ....|+......+.+ .
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 589999999999999999987621 1 000 011111111111111 1
Q ss_pred CcceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEE
Q 011082 352 DIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 431 (494)
Q Consensus 352 ~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlV 431 (494)
...+.++||||... +...++..+..+|++++|+|+..+. +..+....+..+..+ ...|+|+|
T Consensus 82 ~~~i~~iDtPG~~~-------~~~~~~~~~~~~D~~llVvd~~~~~-------~~~~t~~~l~~~~~~----~~~~iiiv 143 (203)
T cd01888 82 VRHVSFVDCPGHEI-------LMATMLSGAAVMDGALLLIAANEPC-------PQPQTSEHLAALEIM----GLKHIIIV 143 (203)
T ss_pred ccEEEEEECCChHH-------HHHHHHHhhhcCCEEEEEEECCCCC-------CCcchHHHHHHHHHc----CCCcEEEE
Confidence 15789999999643 5556677788889999999998621 111111222222211 13578999
Q ss_pred EeCCCcCChHH---HHHHHHHHc-----CCCCEEEEEcccCCCHHHHHHHHHHHhcc
Q 011082 432 ANKIDEDGAEE---VYEELERRV-----QGVPIYPVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 432 lNKiDl~~~~e---~~~~L~~~~-----~~~~ii~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
+||+|+..... ..+.+++.+ ...++|++||++++|+++|++.|.+.+.+
T Consensus 144 vNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 144 QNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred EEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 99999986432 234444443 25679999999999999999999987765
No 162
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.66 E-value=1.7e-15 Score=142.57 Aligned_cols=152 Identities=14% Similarity=0.164 Sum_probs=107.7
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|.+++|||||++++.... ...+|..|........+.+++ ..+.+|||+|..+. ......++..+|
T Consensus 7 KivvvGd~~vGKTsli~~~~~~~-f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~-------~~~~~~~~~~ad 78 (182)
T cd04172 7 KIVVVGDSQCGKTALLHVFAKDC-FPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY-------DNVRPLSYPDSD 78 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-CCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhh-------HhhhhhhcCCCC
Confidence 69999999999999999998753 233444343333333445555 56899999997542 111223567899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHH-HHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----------------HHHHHHHH
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQL-RDLIIELEHHQEGLSDRPSLVVANKIDEDGA----------------EEVYEELE 448 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~-~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----------------~e~~~~L~ 448 (494)
++++|+|+++ ..++..+ ..|..++..+. .+.|.|+|+||+|+... .+..+.+.
T Consensus 79 ~~ilvyDit~-------~~Sf~~~~~~w~~~i~~~~---~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a 148 (182)
T cd04172 79 AVLICFDISR-------PETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMA 148 (182)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHHHC---CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHH
Confidence 9999999987 4667775 67777776654 36899999999998531 12234444
Q ss_pred HHcCCCCEEEEEcccCCC-HHHHHHHHHHH
Q 011082 449 RRVQGVPIYPVCAVLEEG-VPELKVGLRML 477 (494)
Q Consensus 449 ~~~~~~~ii~ISA~~g~g-I~~L~~~I~~~ 477 (494)
+.....+++++||+++.| |++++..+.+.
T Consensus 149 ~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 149 KQIGAATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred HHcCCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 444324799999999998 99999988874
No 163
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.66 E-value=2.5e-15 Score=138.04 Aligned_cols=148 Identities=16% Similarity=0.176 Sum_probs=105.0
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|.+|||||||++++..... ...++ +|.......+.+++ ..+.+|||+|... ...+..+|
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f-~~~~~-~~~~~~~~~i~~~~~~~~l~i~D~~g~~~------------~~~~~~~~ 67 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSY-VQLES-PEGGRFKKEVLVDGQSHLLLIRDEGGAPD------------AQFASWVD 67 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC-CCCCC-CCccceEEEEEECCEEEEEEEEECCCCCc------------hhHHhcCC
Confidence 589999999999999998765422 12222 22222334566666 5688999999843 12356799
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCC--hH----HHHHHHHHHcCCCCEEEE
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDG--AE----EVYEELERRVQGVPIYPV 459 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~--~~----e~~~~L~~~~~~~~ii~I 459 (494)
++++|+|+++ ..++.....++.++..+. ...+.|+++|.||+|+.. .. +..+.+.+......++++
T Consensus 68 ~~ilv~d~~~-------~~sf~~~~~~~~~i~~~~-~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 139 (158)
T cd04103 68 AVIFVFSLEN-------EASFQTVYNLYHQLSSYR-NISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYET 139 (158)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhc-CCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEE
Confidence 9999999998 467777777777776553 234679999999999842 11 122334443345789999
Q ss_pred EcccCCCHHHHHHHHHHH
Q 011082 460 CAVLEEGVPELKVGLRML 477 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~ 477 (494)
||+++.||++++..+.+.
T Consensus 140 SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 140 CATYGLNVERVFQEAAQK 157 (158)
T ss_pred ecCCCCCHHHHHHHHHhh
Confidence 999999999999998754
No 164
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.66 E-value=2.3e-15 Score=147.08 Aligned_cols=154 Identities=14% Similarity=0.165 Sum_probs=107.4
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|++||.+|+|||||++.+.... ....|..|......-.+.+++ ..+.+|||+|... +......++..+|
T Consensus 15 KIvvvGd~~VGKTsLi~r~~~~~-F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~-------~~~~~~~~~~~ad 86 (232)
T cd04174 15 KLVLVGDVQCGKTAMLQVLAKDC-YPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPY-------YDNVRPLCYSDSD 86 (232)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC-CCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchh-------hHHHHHHHcCCCc
Confidence 68999999999999999998753 233443333222223345555 6789999999754 2112234578899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHH-HHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----------------HHHHHHHH
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQ-LRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----------------EEVYEELE 448 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~-~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----------------~e~~~~L~ 448 (494)
++++|+|+++ ..++.. ...|..++..+. ...|+|+|+||+|+... .+..+.+.
T Consensus 87 ~vIlVyDit~-------~~Sf~~~~~~w~~~i~~~~---~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a 156 (232)
T cd04174 87 AVLLCFDISR-------PETVDSALKKWKAEIMDYC---PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALA 156 (232)
T ss_pred EEEEEEECCC-------hHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHH
Confidence 9999999987 356665 356777776553 36799999999998531 12233444
Q ss_pred HHcCCC-CEEEEEcccCC-CHHHHHHHHHHHhcc
Q 011082 449 RRVQGV-PIYPVCAVLEE-GVPELKVGLRMLVNG 480 (494)
Q Consensus 449 ~~~~~~-~ii~ISA~~g~-gI~~L~~~I~~~l~~ 480 (494)
+.+ +. .++++||++++ ||+++|..+...+.+
T Consensus 157 ~~~-~~~~~~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 157 KQL-GAEVYLECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred HHc-CCCEEEEccCCcCCcCHHHHHHHHHHHHHH
Confidence 444 44 58999999998 899999998877544
No 165
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.66 E-value=1.6e-15 Score=140.72 Aligned_cols=150 Identities=15% Similarity=0.152 Sum_probs=102.6
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|.+|+|||||++++.+.. ....|..|+.+.....+.+++ ..+.+|||||..+.... .-..+..+|
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~a~ 73 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNG-YPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKL-------RPLCYPDTD 73 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-CCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccc-------cccccCCCc
Confidence 58999999999999999997643 344566565444444555655 56789999998542111 112457899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHH-HHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----------------HHHHHHH
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQL-RDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----------------EVYEELE 448 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~-~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----------------e~~~~L~ 448 (494)
++|+|+|+++ ..++... ..+...+... ..+.|+++|+||+|+.... +....+.
T Consensus 74 ~~i~v~d~~~-------~~sf~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a 143 (173)
T cd04130 74 VFLLCFSVVN-------PSSFQNISEKWIPEIRKH---NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALA 143 (173)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhh---CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHH
Confidence 9999999987 2444444 2344455432 2368999999999986432 1122333
Q ss_pred HHcCCCCEEEEEcccCCCHHHHHHHHH
Q 011082 449 RRVQGVPIYPVCAVLEEGVPELKVGLR 475 (494)
Q Consensus 449 ~~~~~~~ii~ISA~~g~gI~~L~~~I~ 475 (494)
+......++++||+++.|++++++.+.
T Consensus 144 ~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 144 EKIGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 333334899999999999999998875
No 166
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.66 E-value=2.1e-15 Score=139.06 Aligned_cols=149 Identities=26% Similarity=0.247 Sum_probs=100.3
Q ss_pred eeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhceee
Q 011082 309 VGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLA 388 (494)
Q Consensus 309 V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll 388 (494)
|+++|.+|||||||++++++.... ..|.. |.......+...+..+.+|||||... +...+..+++.+|+++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~-~~~~p-t~g~~~~~i~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~ad~ii 72 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL-ESVVP-TTGFNSVAIPTQDAIMELLEIGGSQN-------LRKYWKRYLSGSQGLI 72 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc-ccccc-cCCcceEEEeeCCeEEEEEECCCCcc-------hhHHHHHHHhhCCEEE
Confidence 789999999999999999976432 22322 22222233445567899999999754 3334556789999999
Q ss_pred EEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHH---HHH--HHHHc--CCCCEEEEEc
Q 011082 389 YVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV---YEE--LERRV--QGVPIYPVCA 461 (494)
Q Consensus 389 ~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~---~~~--L~~~~--~~~~ii~ISA 461 (494)
+|+|+++. ..+...+.++.++... ..+.|+++|+||+|+...... .+. +.... .+..++++||
T Consensus 73 ~V~D~t~~-------~s~~~~~~~l~~~~~~---~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa 142 (164)
T cd04162 73 FVVDSADS-------ERLPLARQELHQLLQH---PPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSL 142 (164)
T ss_pred EEEECCCH-------HHHHHHHHHHHHHHhC---CCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeee
Confidence 99998872 3344444444444321 247899999999998754321 111 11111 2466888999
Q ss_pred cc------CCCHHHHHHHHHH
Q 011082 462 VL------EEGVPELKVGLRM 476 (494)
Q Consensus 462 ~~------g~gI~~L~~~I~~ 476 (494)
++ ++|++++++.+..
T Consensus 143 ~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 143 DDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred cCCCChhHHHHHHHHHHHHhc
Confidence 88 9999999998764
No 167
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.65 E-value=1.4e-15 Score=142.07 Aligned_cols=153 Identities=22% Similarity=0.327 Sum_probs=108.9
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhcee
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 387 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~l 387 (494)
+|.++|+.|||||||++.|..... .. ...|.......+.+.+..+.++|++|... +...|..++..+|++
T Consensus 16 ~ililGl~~sGKTtll~~l~~~~~--~~-~~pT~g~~~~~i~~~~~~~~~~d~gG~~~-------~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 16 KILILGLDGSGKTTLLNRLKNGEI--SE-TIPTIGFNIEEIKYKGYSLTIWDLGGQES-------FRPLWKSYFQNADGI 85 (175)
T ss_dssp EEEEEESTTSSHHHHHHHHHSSSE--EE-EEEESSEEEEEEEETTEEEEEEEESSSGG-------GGGGGGGGHTTESEE
T ss_pred EEEEECCCccchHHHHHHhhhccc--cc-cCcccccccceeeeCcEEEEEEecccccc-------ccccceeecccccee
Confidence 799999999999999999986421 11 33455566677888889999999999744 223445567889999
Q ss_pred eEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH---HHHHHHH-HHc---CCCCEEEEE
Q 011082 388 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELE-RRV---QGVPIYPVC 460 (494)
Q Consensus 388 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~---e~~~~L~-~~~---~~~~ii~IS 460 (494)
+||+|.++. .........+.++... ..+...|.++++||.|+.+.. ++...+. ..+ ....++.+|
T Consensus 86 IfVvDssd~-------~~l~e~~~~L~~ll~~-~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~s 157 (175)
T PF00025_consen 86 IFVVDSSDP-------ERLQEAKEELKELLND-PELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCS 157 (175)
T ss_dssp EEEEETTGG-------GGHHHHHHHHHHHHTS-GGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEB
T ss_pred EEEEecccc-------eeecccccchhhhcch-hhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeee
Confidence 999999972 3344444444444332 345689999999999987642 2222221 111 245689999
Q ss_pred cccCCCHHHHHHHHHHHh
Q 011082 461 AVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l 478 (494)
|.+|+|+.+.++||.+.+
T Consensus 158 a~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 158 AKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp TTTTBTHHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHhcC
Confidence 999999999999998753
No 168
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.65 E-value=2.7e-16 Score=150.92 Aligned_cols=169 Identities=28% Similarity=0.412 Sum_probs=130.3
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhce
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 386 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ 386 (494)
++|+++|+|.+|||||+..|++....++.|.|||+....|.+.+.+..+.+.|.||+++++..+++.+.+.+...+.|++
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence 47999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecCCCCCC------------------CC----------CC------CCHHHHHHHHHHHHhhhc-----------
Q 011082 387 LAYVVDLASGLDG------------------RK----------GI------KPWKQLRDLIIELEHHQE----------- 421 (494)
Q Consensus 387 ll~VvD~s~~~~~------------------~~----------~~------~~~~~~~~l~~eL~~~~~----------- 421 (494)
+++|+|+..+... ++ |. .-.+....++.+-..++.
T Consensus 140 i~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~D 219 (358)
T KOG1487|consen 140 IFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATAD 219 (358)
T ss_pred EEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcchh
Confidence 9999998765210 00 00 011122222222221110
Q ss_pred ----cc----CCCCEEEEEeCCCcCChHHHHHHHHHHcCCCCEEEEEcccCCCHHHHHHHHHHHhc
Q 011082 422 ----GL----SDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 422 ----~l----~~~P~IlVlNKiDl~~~~e~~~~L~~~~~~~~ii~ISA~~g~gI~~L~~~I~~~l~ 479 (494)
.+ .-.|.|.++||+|-..-++. .-.+.....++|||.++.|+++|++.+++.+.
T Consensus 220 dLIdvVegnr~yVp~iyvLNkIdsISiEEL----dii~~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 220 DLIDVVEGNRIYVPCIYVLNKIDSISIEEL----DIIYTIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred hhhhhhccCceeeeeeeeecccceeeeecc----ceeeeccceeecccccccchHHHHHHHhhcch
Confidence 01 24789999999998765442 11223456899999999999999999998874
No 169
>PRK09866 hypothetical protein; Provisional
Probab=99.65 E-value=1e-15 Score=164.34 Aligned_cols=110 Identities=18% Similarity=0.218 Sum_probs=75.0
Q ss_pred ceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEe
Q 011082 354 QITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVAN 433 (494)
Q Consensus 354 ~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlN 433 (494)
+++++||||+..... ..+...+.+.+..+|++|+|+|..... ......+.+.+..... +.|+++|+|
T Consensus 231 QIIFVDTPGIhk~~~--~~L~k~M~eqL~eADvVLFVVDat~~~--------s~~DeeIlk~Lkk~~K---~~PVILVVN 297 (741)
T PRK09866 231 QLTLLDTPGPNEAGQ--PHLQKMLNQQLARASAVLAVLDYTQLK--------SISDEEVREAILAVGQ---SVPLYVLVN 297 (741)
T ss_pred CEEEEECCCCCCccc--hHHHHHHHHHHhhCCEEEEEEeCCCCC--------ChhHHHHHHHHHhcCC---CCCEEEEEE
Confidence 468899999975322 224555667899999999999987621 1222344455543211 259999999
Q ss_pred CCCcCC-----hHHHHHHHHHHc-----CCCCEEEEEcccCCCHHHHHHHHHH
Q 011082 434 KIDEDG-----AEEVYEELERRV-----QGVPIYPVCAVLEEGVPELKVGLRM 476 (494)
Q Consensus 434 KiDl~~-----~~e~~~~L~~~~-----~~~~ii~ISA~~g~gI~~L~~~I~~ 476 (494)
|+|+.+ .+...+.+...+ +...+|+|||+.|.|++.|++.|..
T Consensus 298 KIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 298 KFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred cccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 999875 233334333231 2457999999999999999999986
No 170
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.65 E-value=2.9e-15 Score=135.81 Aligned_cols=155 Identities=21% Similarity=0.265 Sum_probs=98.9
Q ss_pred eeeeeCCCCCcHHHHHHHHHc--CCCCcccccceeecceeeEEeecCcceEEecCCCccCCcc------ccccchhhHHH
Q 011082 308 DVGLVGMPSAGKSTLLGAISR--AKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAH------ENRGLGHAFLR 379 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~--~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~------~~~~L~~~fl~ 379 (494)
+|+|+|.+|||||||++.|++ ..+..+..++.|..+.. +..+ ..+.++||||+..... ....+...++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999994 33445555555544332 2222 3889999999865311 11112233344
Q ss_pred HHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH---HHHHHHH----HcC
Q 011082 380 HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE---VYEELER----RVQ 452 (494)
Q Consensus 380 ~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e---~~~~L~~----~~~ 452 (494)
..+..+.+++++|..... ......+...+.. ...|+++|+||+|+....+ ....+.. ...
T Consensus 78 ~~~~~~~~~~v~d~~~~~--------~~~~~~~~~~l~~-----~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~ 144 (170)
T cd01876 78 NRENLKGVVLLIDSRHGP--------TEIDLEMLDWLEE-----LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEI 144 (170)
T ss_pred hChhhhEEEEEEEcCcCC--------CHhHHHHHHHHHH-----cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccC
Confidence 445567889999987521 1112223333332 2579999999999965432 1222222 234
Q ss_pred CCCEEEEEcccCCCHHHHHHHHHHHh
Q 011082 453 GVPIYPVCAVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 453 ~~~ii~ISA~~g~gI~~L~~~I~~~l 478 (494)
..+++++||+++.|++++++.|.+++
T Consensus 145 ~~~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 145 DPPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred CCceEEEecCCCCCHHHHHHHHHHhC
Confidence 56899999999999999999998764
No 171
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.64 E-value=3.3e-15 Score=140.66 Aligned_cols=156 Identities=16% Similarity=0.175 Sum_probs=103.8
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+|+|++|||||||+++|..... ...+..|+.+.....+.+++ ..+.++||+|...... + ....+..+|
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~----~---~~~~~~~a~ 74 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEF-PEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYER----L---RPLSYSKAH 74 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CcccCCcccceEEEEEEECCEEEEEEEEECCCChhccc----c---chhhcCCCC
Confidence 689999999999999999985432 22233333333344455555 4578999999754211 1 112456789
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHH-HHHHHHHhhhcccCCCCEEEEEeCCCcCChH--------------HHHHHHHHH
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAE--------------EVYEELERR 450 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~--------------e~~~~L~~~ 450 (494)
++++|+|+++ ..++..+. .|...+.... .+.|+|+|+||+|+.... +....+.+.
T Consensus 75 ~~llv~~i~~-------~~s~~~~~~~~~~~i~~~~---~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (187)
T cd04129 75 VILIGFAVDT-------PDSLENVRTKWIEEVRRYC---PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKE 144 (187)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHH
Confidence 9999999976 24555554 3555554432 368999999999985311 122334444
Q ss_pred cCCCCEEEEEcccCCCHHHHHHHHHHHhccc
Q 011082 451 VQGVPIYPVCAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 451 ~~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~ 481 (494)
+...+++++||+++.|++++++.+.+.+...
T Consensus 145 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 175 (187)
T cd04129 145 IGAKKYMECSALTGEGVDDVFEAATRAALLV 175 (187)
T ss_pred hCCcEEEEccCCCCCCHHHHHHHHHHHHhcc
Confidence 4334799999999999999999998665443
No 172
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.64 E-value=2.2e-15 Score=165.49 Aligned_cols=149 Identities=28% Similarity=0.464 Sum_probs=110.6
Q ss_pred CCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCcccc--ccchhhHHHHHHhhceeeEE
Q 011082 313 GMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN--RGLGHAFLRHIERTKVLAYV 390 (494)
Q Consensus 313 G~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~--~~L~~~fl~~i~~ad~ll~V 390 (494)
|.||||||||+|+|++.+..+++++++|.+...+.+.+++..+.++||||+.+..... ......++. .+.+|++++|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~-~~~aDvvI~V 79 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLL-NEKPDLVVNV 79 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHh-hcCCCEEEEE
Confidence 8999999999999999988899999999999999999988899999999997632211 111111111 2368999999
Q ss_pred EecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH---HHHHHHHHHcCCCCEEEEEcccCCCH
Q 011082 391 VDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYPVCAVLEEGV 467 (494)
Q Consensus 391 vD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~---e~~~~L~~~~~~~~ii~ISA~~g~gI 467 (494)
+|.++. + .. ..+..++.. .+.|+++|+||+|+.+.. ...+.+.+.+ +.+++++||++++|+
T Consensus 80 vDat~l-------e--r~-l~l~~ql~~-----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~l-g~pvv~tSA~tg~Gi 143 (591)
T TIGR00437 80 VDASNL-------E--RN-LYLTLQLLE-----LGIPMILALNLVDEAEKKGIRIDEEKLEERL-GVPVVPTSATEGRGI 143 (591)
T ss_pred ecCCcc-------h--hh-HHHHHHHHh-----cCCCEEEEEehhHHHHhCCChhhHHHHHHHc-CCCEEEEECCCCCCH
Confidence 998762 1 11 122223322 268999999999986432 2245566655 578999999999999
Q ss_pred HHHHHHHHHHh
Q 011082 468 PELKVGLRMLV 478 (494)
Q Consensus 468 ~~L~~~I~~~l 478 (494)
+++++.+.+..
T Consensus 144 ~eL~~~i~~~~ 154 (591)
T TIGR00437 144 ERLKDAIRKAI 154 (591)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 173
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.63 E-value=1.5e-15 Score=135.91 Aligned_cols=137 Identities=23% Similarity=0.302 Sum_probs=88.0
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhcee
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 387 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~l 387 (494)
+|++||.+|+|||||+++|++.... +. ++ ..+.+.. .++||||..... ..+.......++.+|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~---~~-----~t-~~~~~~~---~~iDt~G~~~~~---~~~~~~~~~~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL---YK-----KT-QAVEYND---GAIDTPGEYVEN---RRLYSALIVTAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc---cc-----cc-eeEEEcC---eeecCchhhhhh---HHHHHHHHHHhhcCCEE
Confidence 6899999999999999999986431 11 11 1233332 689999974210 11122223457899999
Q ss_pred eEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH---HHHHHHHHHcCCCCEEEEEcccC
Q 011082 388 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYPVCAVLE 464 (494)
Q Consensus 388 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~---e~~~~L~~~~~~~~ii~ISA~~g 464 (494)
++|+|+++... ... ..+.. . ...|.|+|+||+|+.... +..+.+.+.....+++++||+++
T Consensus 67 ilv~d~~~~~s-------~~~-~~~~~-~-------~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 130 (142)
T TIGR02528 67 ALVQSATDPES-------RFP-PGFAS-I-------FVKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDE 130 (142)
T ss_pred EEEecCCCCCc-------CCC-hhHHH-h-------ccCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCC
Confidence 99999987421 111 11211 1 135999999999996532 22223333332347999999999
Q ss_pred CCHHHHHHHHH
Q 011082 465 EGVPELKVGLR 475 (494)
Q Consensus 465 ~gI~~L~~~I~ 475 (494)
.|+++++++|.
T Consensus 131 ~gi~~l~~~l~ 141 (142)
T TIGR02528 131 QGLEALVDYLN 141 (142)
T ss_pred CCHHHHHHHHh
Confidence 99999998874
No 174
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=7.5e-15 Score=137.86 Aligned_cols=158 Identities=20% Similarity=0.258 Sum_probs=124.8
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
..+|.+||.+|+|||.|+-+++.......-....-++.....+.+++ ..+.+|||.|..+ +...+-++++.
T Consensus 12 ~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQer-------f~ti~~sYyrg 84 (207)
T KOG0078|consen 12 LFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQER-------FRTITTAYYRG 84 (207)
T ss_pred EEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchh-------HHHHHHHHHhh
Confidence 45799999999999999999987643322211222455566777777 5679999999976 44567788999
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEE
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPV 459 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~I 459 (494)
|+.+++|+|+++ ..+++.+..|+..+..+.+. ..|.++|.||+|+.... +.-+.|...+ +..++++
T Consensus 85 A~gi~LvyDitn-------e~Sfeni~~W~~~I~e~a~~--~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~-G~~F~Et 154 (207)
T KOG0078|consen 85 AMGILLVYDITN-------EKSFENIRNWIKNIDEHASD--DVVKILVGNKCDLEEKRQVSKERGEALAREY-GIKFFET 154 (207)
T ss_pred cCeeEEEEEccc-------hHHHHHHHHHHHHHHhhCCC--CCcEEEeeccccccccccccHHHHHHHHHHh-CCeEEEc
Confidence 999999999998 46788888899999888664 78999999999998742 4455666666 7899999
Q ss_pred EcccCCCHHHHHHHHHHHhcc
Q 011082 460 CAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~ 480 (494)
||+++.||++.+-.|.+.+..
T Consensus 155 SAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 155 SAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred cccCCCCHHHHHHHHHHHHHh
Confidence 999999999999888877664
No 175
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.63 E-value=5.1e-15 Score=141.51 Aligned_cols=148 Identities=18% Similarity=0.163 Sum_probs=104.2
Q ss_pred eCCCCCcHHHHHHHHHcCCCCcccccceeec--ceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhcee
Q 011082 312 VGMPSAGKSTLLGAISRAKPAVGHYSFTTLR--PNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 387 (494)
Q Consensus 312 VG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~--p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~l 387 (494)
||.+|||||||++++..... ...|.. |+. ...-.+.+++ ..+.+|||+|..+. ......++..+|++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f-~~~~~~-Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~-------~~l~~~~~~~ad~~ 71 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF-EKKYVA-TLGVEVHPLVFHTNRGPIRFNVWDTAGQEKF-------GGLRDGYYIQGQCA 71 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC-CCCCCC-ceeEEEEEEEEEECCEEEEEEEEECCCchhh-------hhhhHHHhcCCCEE
Confidence 69999999999999986432 223322 222 2222334443 67899999998652 22233567889999
Q ss_pred eEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH---HHHHHHHHHcCCCCEEEEEcccC
Q 011082 388 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYPVCAVLE 464 (494)
Q Consensus 388 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~---e~~~~L~~~~~~~~ii~ISA~~g 464 (494)
|+|+|+++ ..++..+..|..++..+. .+.|+|+|+||+|+.... +.. .+.+. .+..++++||+++
T Consensus 72 ilV~D~t~-------~~S~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~~~v~~~~~-~~~~~-~~~~~~e~SAk~~ 139 (200)
T smart00176 72 IIMFDVTA-------RVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDVKDRKVKAKSI-TFHRK-KNLQYYDISAKSN 139 (200)
T ss_pred EEEEECCC-------hHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccCCHHHH-HHHHH-cCCEEEEEeCCCC
Confidence 99999997 356677777777776653 368999999999985432 111 22222 3578999999999
Q ss_pred CCHHHHHHHHHHHhcc
Q 011082 465 EGVPELKVGLRMLVNG 480 (494)
Q Consensus 465 ~gI~~L~~~I~~~l~~ 480 (494)
+||++++.+|...+.+
T Consensus 140 ~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 140 YNFEKPFLWLARKLIG 155 (200)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999987754
No 176
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.63 E-value=3.2e-15 Score=143.60 Aligned_cols=145 Identities=20% Similarity=0.211 Sum_probs=96.9
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcc-------------------------------cccceeecceeeEEeecCcceE
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVG-------------------------------HYSFTTLRPNLGNMNFDDIQIT 356 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~-------------------------------~~~ftTl~p~~g~v~~~~~~~~ 356 (494)
+|+|+|.+|||||||+++|+...-.+. ....+|+++....+.+++..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 489999999999999999975422211 1145788888888888889999
Q ss_pred EecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCC
Q 011082 357 VADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKID 436 (494)
Q Consensus 357 l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiD 436 (494)
++||||+.+ +.......+..+|++|+|+|++.. ...+.......+.. +...++|+|+||+|
T Consensus 81 liDTpG~~~-------~~~~~~~~~~~ad~~llVvD~~~~--------~~~~~~~~~~~~~~----~~~~~iIvviNK~D 141 (208)
T cd04166 81 IADTPGHEQ-------YTRNMVTGASTADLAILLVDARKG--------VLEQTRRHSYILSL----LGIRHVVVAVNKMD 141 (208)
T ss_pred EEECCcHHH-------HHHHHHHhhhhCCEEEEEEECCCC--------ccHhHHHHHHHHHH----cCCCcEEEEEEchh
Confidence 999999754 333455667899999999998863 11222222222211 11245677899999
Q ss_pred cCCh-H----HHHHHHHHH---c--CCCCEEEEEcccCCCHHHHH
Q 011082 437 EDGA-E----EVYEELERR---V--QGVPIYPVCAVLEEGVPELK 471 (494)
Q Consensus 437 l~~~-~----e~~~~L~~~---~--~~~~ii~ISA~~g~gI~~L~ 471 (494)
+... . .....+.+. + +..++|+|||+++.|+++..
T Consensus 142 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~~ 186 (208)
T cd04166 142 LVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSRS 186 (208)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccCC
Confidence 9742 1 122333322 2 23469999999999998644
No 177
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=99.62 E-value=1.9e-15 Score=155.51 Aligned_cols=88 Identities=36% Similarity=0.585 Sum_probs=83.3
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCc-----------------ceEEecCCCccCCccc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDI-----------------QITVADIPGLIKGAHE 369 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~-----------------~~~l~DtPGli~~a~~ 369 (494)
.+||||.||+|||||+|+||+..+ .+++|||||++|..|.+.+++. .+.++|+||++.+++.
T Consensus 4 k~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~ 83 (368)
T TIGR00092 4 SGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGASK 83 (368)
T ss_pred eEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchhc
Confidence 689999999999999999999999 9999999999999999998772 5799999999999999
Q ss_pred cccchhhHHHHHHhhceeeEEEecCC
Q 011082 370 NRGLGHAFLRHIERTKVLAYVVDLAS 395 (494)
Q Consensus 370 ~~~L~~~fl~~i~~ad~ll~VvD~s~ 395 (494)
+.+++..|+.+++.+|+++||+|+.+
T Consensus 84 g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 84 GEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred ccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 99999999999999999999999875
No 178
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.62 E-value=8.1e-15 Score=142.35 Aligned_cols=153 Identities=16% Similarity=0.154 Sum_probs=104.3
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|++||.+|||||||+++++... ....|..|........+.+++ ..+.+|||+|.... .......+..+|
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~-f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~-------~~l~~~~~~~~d 74 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDA-YPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYY-------DNVRPLAYPDSD 74 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC-CCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHH-------HHHhHHhccCCC
Confidence 68999999999999999998753 234454444333334455555 56889999997541 111123467899
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHH-HHHHHHHhhhcccCCCCEEEEEeCCCcCChH----------------HHHHHHH
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAE----------------EVYEELE 448 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----------------e~~~~L~ 448 (494)
++|+|+|+++ ..+++.+. .|..++..+ ..+.|+|||+||+|+.... +....+.
T Consensus 75 ~illvfdis~-------~~Sf~~i~~~w~~~~~~~---~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~a 144 (222)
T cd04173 75 AVLICFDISR-------PETLDSVLKKWQGETQEF---CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLA 144 (222)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhh---CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHH
Confidence 9999999997 35555553 344444333 2468999999999996421 1223334
Q ss_pred HHcCCCCEEEEEcccCCC-HHHHHHHHHHHh
Q 011082 449 RRVQGVPIYPVCAVLEEG-VPELKVGLRMLV 478 (494)
Q Consensus 449 ~~~~~~~ii~ISA~~g~g-I~~L~~~I~~~l 478 (494)
+.....+++++||+++++ |+++|+......
T Consensus 145 k~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 145 KQVGAVSYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred HHcCCCEEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 444334799999999885 999999887754
No 179
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.62 E-value=7e-15 Score=140.02 Aligned_cols=140 Identities=21% Similarity=0.234 Sum_probs=95.0
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCC----------------cccccceeecceeeEEeecCcceEEecCCCccCCccccc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPA----------------VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENR 371 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~----------------i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~ 371 (494)
.|+++|..++|||||+++|+..... ......+|.+.....+..++..+.++||||+..
T Consensus 4 ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~------ 77 (195)
T cd01884 4 NVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD------ 77 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH------
Confidence 6899999999999999999753100 011345666665555566668899999999853
Q ss_pred cchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCC-EEEEEeCCCcCChHHHH----HH
Q 011082 372 GLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP-SLVVANKIDEDGAEEVY----EE 446 (494)
Q Consensus 372 ~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P-~IlVlNKiDl~~~~e~~----~~ 446 (494)
+.......+..+|++++|+|+... ...+...++..+... +.| .|+|+||+|+....+.. ++
T Consensus 78 -~~~~~~~~~~~~D~~ilVvda~~g--------~~~~~~~~~~~~~~~-----~~~~iIvviNK~D~~~~~~~~~~~~~~ 143 (195)
T cd01884 78 -YIKNMITGAAQMDGAILVVSATDG--------PMPQTREHLLLARQV-----GVPYIVVFLNKADMVDDEELLELVEME 143 (195)
T ss_pred -HHHHHHHHhhhCCEEEEEEECCCC--------CcHHHHHHHHHHHHc-----CCCcEEEEEeCCCCCCcHHHHHHHHHH
Confidence 444556778889999999998763 223334444444332 456 67889999997543322 23
Q ss_pred HHHHc-------CCCCEEEEEcccCCCH
Q 011082 447 LERRV-------QGVPIYPVCAVLEEGV 467 (494)
Q Consensus 447 L~~~~-------~~~~ii~ISA~~g~gI 467 (494)
+.+.+ ...++++|||++|.++
T Consensus 144 i~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 144 VRELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHHHHHHhcccccCCeEEEeeCccccCC
Confidence 43332 2468999999999874
No 180
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.61 E-value=1.7e-14 Score=135.39 Aligned_cols=159 Identities=19% Similarity=0.276 Sum_probs=109.4
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCC--CCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhH----H
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAK--PAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAF----L 378 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~--~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~f----l 378 (494)
..+-|+++|.+|+|||||||+|++.+ .+++..|+.|..++.-.+ ++ .+.++|.||+.- +...+.....| .
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~--~~-~~~lVDlPGYGy-Akv~k~~~e~w~~~i~ 98 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV--DD-ELRLVDLPGYGY-AKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe--cC-cEEEEeCCCccc-ccCCHHHHHHHHHHHH
Confidence 45679999999999999999999987 678999998876654433 32 389999999853 22111111122 2
Q ss_pred HHH---HhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHH---HHHHHHHc-
Q 011082 379 RHI---ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV---YEELERRV- 451 (494)
Q Consensus 379 ~~i---~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~---~~~L~~~~- 451 (494)
+++ ..-..+++++|+.++ +...-+++...+.. ...|.++|+||+|.....+. +..+++.+
T Consensus 99 ~YL~~R~~L~~vvlliD~r~~--------~~~~D~em~~~l~~-----~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~ 165 (200)
T COG0218 99 EYLEKRANLKGVVLLIDARHP--------PKDLDREMIEFLLE-----LGIPVIVVLTKADKLKKSERNKQLNKVAEELK 165 (200)
T ss_pred HHHhhchhheEEEEEEECCCC--------CcHHHHHHHHHHHH-----cCCCeEEEEEccccCChhHHHHHHHHHHHHhc
Confidence 222 234678899999873 22222334444433 27899999999999886543 34455433
Q ss_pred --CCCC--EEEEEcccCCCHHHHHHHHHHHhcc
Q 011082 452 --QGVP--IYPVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 452 --~~~~--ii~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
+... ++.+|+.++.|+++|...|.+.+..
T Consensus 166 ~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 166 KPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 2223 8899999999999999999887754
No 181
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.61 E-value=1.2e-14 Score=132.60 Aligned_cols=154 Identities=20% Similarity=0.297 Sum_probs=113.2
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCccccccee-ecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTT-LRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftT-l~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
+|+++|.+++|||||++++.+... ...+..|. .+.....+.+++ ..+.+||++|..+ +.......+..+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~-------~~~~~~~~~~~~ 72 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-PENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQER-------FDSLRDIFYRNS 72 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-TSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGG-------GHHHHHHHHTTE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-cccccccccccccccccccccccccccccccccccc-------cccccccccccc
Confidence 589999999999999999997643 23333332 344455566655 5689999999754 111122346789
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~IS 460 (494)
|++++|+|+++ ..++..+..|...+..+.+ ...|+++|.||.|+.... +....+.+.+. .+++.+|
T Consensus 73 ~~~ii~fd~~~-------~~S~~~~~~~~~~i~~~~~--~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~-~~~~e~S 142 (162)
T PF00071_consen 73 DAIIIVFDVTD-------EESFENLKKWLEEIQKYKP--EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELG-VPYFEVS 142 (162)
T ss_dssp SEEEEEEETTB-------HHHHHTHHHHHHHHHHHST--TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT-SEEEEEB
T ss_pred ccccccccccc-------ccccccccccccccccccc--ccccceeeeccccccccccchhhHHHHHHHHhC-CEEEEEE
Confidence 99999999988 4678888888888877654 357999999999987622 22344555554 8999999
Q ss_pred cccCCCHHHHHHHHHHHhc
Q 011082 461 AVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~ 479 (494)
|+++.|+.+++..+.+.+.
T Consensus 143 a~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 143 AKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp TTTTTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999887653
No 182
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=4.6e-15 Score=137.12 Aligned_cols=158 Identities=18% Similarity=0.189 Sum_probs=110.5
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeec--ceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLR--PNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~--p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
+|.|+|..|+|||||+-++...+... +.-.|+. ..+-.+.+++ ..|.+|||.|..+..+. .. -+++.
T Consensus 7 KvvLLG~~~VGKSSlV~Rfvk~~F~e--~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~sl----ap---MYyRg 77 (200)
T KOG0092|consen 7 KVVLLGDSGVGKSSLVLRFVKDQFHE--NIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSL----AP---MYYRG 77 (200)
T ss_pred EEEEECCCCCCchhhhhhhhhCcccc--ccccccccEEEEEEEEeCCcEEEEEEEEcCCccccccc----cc---ceecC
Confidence 68999999999999998886543211 1001111 1122344455 67889999999874332 22 35789
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH-HH---HHHHHHcCCCCEEEE
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE-VY---EELERRVQGVPIYPV 459 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e-~~---~~L~~~~~~~~ii~I 459 (494)
|++.|+|+|+++ .+++...+.|..+|..-.+ .+.-+.+|.||+||.+..+ .. +.+.+. .+..++++
T Consensus 78 A~AAivvYDit~-------~~SF~~aK~WvkeL~~~~~--~~~vialvGNK~DL~~~R~V~~~ea~~yAe~-~gll~~ET 147 (200)
T KOG0092|consen 78 ANAAIVVYDITD-------EESFEKAKNWVKELQRQAS--PNIVIALVGNKADLLERREVEFEEAQAYAES-QGLLFFET 147 (200)
T ss_pred CcEEEEEEeccc-------HHHHHHHHHHHHHHHhhCC--CCeEEEEecchhhhhhcccccHHHHHHHHHh-cCCEEEEE
Confidence 999999999998 5889999999999986533 2333444669999987322 12 222232 46789999
Q ss_pred EcccCCCHHHHHHHHHHHhcccCCc
Q 011082 460 CAVLEEGVPELKVGLRMLVNGEKSE 484 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~~~~~ 484 (494)
||+++.|+++|+..|.+.+......
T Consensus 148 SAKTg~Nv~~if~~Ia~~lp~~~~~ 172 (200)
T KOG0092|consen 148 SAKTGENVNEIFQAIAEKLPCSDPQ 172 (200)
T ss_pred ecccccCHHHHHHHHHHhccCcccc
Confidence 9999999999999999998775543
No 183
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.60 E-value=1.2e-14 Score=159.57 Aligned_cols=155 Identities=22% Similarity=0.259 Sum_probs=110.7
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCC---CcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKP---AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~---~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.|+++|.+|+|||||+++|++... .....+..|.+.....+.+++..+.++||||+.. +...++..+..+
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~-------f~~~~~~g~~~a 74 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEK-------FISNAIAGGGGI 74 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHH-------HHHHHHhhhccC
Confidence 589999999999999999997532 1122345677766667777788899999999743 445566777889
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCC-EEEEEeCCCcCChHH---HHHHHHHHc------CCC
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP-SLVVANKIDEDGAEE---VYEELERRV------QGV 454 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P-~IlVlNKiDl~~~~e---~~~~L~~~~------~~~ 454 (494)
|++++|+|+++.. ..+....+..+.. .+.| .|+|+||+|+.+.+. ..+.+++.+ .+.
T Consensus 75 D~aILVVDa~~G~--------~~qT~ehl~il~~-----lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~ 141 (581)
T TIGR00475 75 DAALLVVDADEGV--------MTQTGEHLAVLDL-----LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNA 141 (581)
T ss_pred CEEEEEEECCCCC--------cHHHHHHHHHHHH-----cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 9999999998731 1222222222221 2567 999999999987542 222333322 257
Q ss_pred CEEEEEcccCCCHHHHHHHHHHHhcccC
Q 011082 455 PIYPVCAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 455 ~ii~ISA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
++|++||++|+|++++++.|..++....
T Consensus 142 ~ii~vSA~tG~GI~eL~~~L~~l~~~~~ 169 (581)
T TIGR00475 142 KIFKTSAKTGQGIGELKKELKNLLESLD 169 (581)
T ss_pred cEEEEeCCCCCCchhHHHHHHHHHHhCC
Confidence 8999999999999999999988876644
No 184
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.60 E-value=1.6e-14 Score=161.89 Aligned_cols=154 Identities=27% Similarity=0.298 Sum_probs=111.0
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
...+.|+|+|..|+|||||+++|.+...........|.+.....+.+++..+.|+||||+.. +...+.+.+..
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~-------F~~m~~rga~~ 360 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEA-------FTAMRARGAQV 360 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCcc-------chhHHHhhhhh
Confidence 46789999999999999999999886655555566666665556777788899999999865 33344566788
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh--HHHHHHHHHH------c-CCC
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYEELERR------V-QGV 454 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~--~e~~~~L~~~------~-~~~ 454 (494)
+|++|+|+|+.+.. ..+....+..+. ..+.|+|+|+||+|+... +.+...+.+. + ...
T Consensus 361 aDiaILVVdAddGv--------~~qT~e~i~~a~-----~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~v 427 (787)
T PRK05306 361 TDIVVLVVAADDGV--------MPQTIEAINHAK-----AAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDT 427 (787)
T ss_pred CCEEEEEEECCCCC--------CHhHHHHHHHHH-----hcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCc
Confidence 99999999988632 122222222222 136899999999999753 3333333321 1 236
Q ss_pred CEEEEEcccCCCHHHHHHHHHHH
Q 011082 455 PIYPVCAVLEEGVPELKVGLRML 477 (494)
Q Consensus 455 ~ii~ISA~~g~gI~~L~~~I~~~ 477 (494)
++|++||++|.||++|++.|...
T Consensus 428 p~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 428 IFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred eEEEEeCCCCCCchHHHHhhhhh
Confidence 89999999999999999998754
No 185
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.60 E-value=1.1e-14 Score=138.66 Aligned_cols=150 Identities=18% Similarity=0.165 Sum_probs=100.0
Q ss_pred eeeeeCCCCCcHHHHHH-HHHcCCC----Ccccccceee--cceeeE--------EeecC--cceEEecCCCccCCcccc
Q 011082 308 DVGLVGMPSAGKSTLLG-AISRAKP----AVGHYSFTTL--RPNLGN--------MNFDD--IQITVADIPGLIKGAHEN 370 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn-~Lt~~~~----~i~~~~ftTl--~p~~g~--------v~~~~--~~~~l~DtPGli~~a~~~ 370 (494)
+|+++|.+|+|||||+. .+.+... ....|..|.- +...-. +.+++ ..+.+|||+|..+.
T Consensus 4 Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~---- 79 (195)
T cd01873 4 KCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK---- 79 (195)
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh----
Confidence 69999999999999995 5654321 1223332221 111101 12344 67899999998541
Q ss_pred ccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHH-HHHHHHHhhhcccCCCCEEEEEeCCCcCCh---------
Q 011082 371 RGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGA--------- 440 (494)
Q Consensus 371 ~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~--------- 440 (494)
+. ..++..+|++++|+|+++ ..+++.+. .|..++..+. .+.|+|+|+||+|+...
T Consensus 80 --~~---~~~~~~ad~iilv~d~t~-------~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~~~~~~~~~~~ 144 (195)
T cd01873 80 --DR---RFAYGRSDVVLLCFSIAS-------PNSLRNVKTMWYPEIRHFC---PRVPVILVGCKLDLRYADLDEVNRAR 144 (195)
T ss_pred --hh---cccCCCCCEEEEEEECCC-------hhHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhccccccchhhhcc
Confidence 11 124678999999999987 35677665 4666665543 36799999999998631
Q ss_pred --------------HHHHHHHHHHcCCCCEEEEEcccCCCHHHHHHHHHHH
Q 011082 441 --------------EEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRML 477 (494)
Q Consensus 441 --------------~e~~~~L~~~~~~~~ii~ISA~~g~gI~~L~~~I~~~ 477 (494)
.+..+.+.+.+ +.+++++||+++.||+++++.+.+.
T Consensus 145 ~~~~~~~~~~~~V~~~e~~~~a~~~-~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 145 RPLARPIKNADILPPETGRAVAKEL-GIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred cccccccccCCccCHHHHHHHHHHh-CCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 12233444444 5689999999999999999988764
No 186
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.60 E-value=2.4e-14 Score=128.95 Aligned_cols=155 Identities=24% Similarity=0.262 Sum_probs=114.8
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhcee
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 387 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~l 387 (494)
+|.++|..||||||++++|.+..+ +..-.|+..+..++.+++.++.+||+-|.-. +...|..+++.+|.+
T Consensus 18 riLiLGLdNsGKTti~~kl~~~~~---~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~-------lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 18 RILILGLDNSGKTTIVKKLLGEDT---DTISPTLGFQIKTLEYKGYTLNIWDVGGQKT-------LRSYWKNYFESTDGL 87 (185)
T ss_pred EEEEEecCCCCchhHHHHhcCCCc---cccCCccceeeEEEEecceEEEEEEcCCcch-------hHHHHHHhhhccCeE
Confidence 689999999999999999998742 2222345556677889999999999999865 556677888999999
Q ss_pred eEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh---HHHH--HHHHHHc--CCCCEEEEE
Q 011082 388 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVY--EELERRV--QGVPIYPVC 460 (494)
Q Consensus 388 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~---~e~~--~~L~~~~--~~~~ii~IS 460 (494)
|+|+|.++. ..++.....+.++.. ...++..|.++++||.|+... +++. -.|.+.. ..++++.||
T Consensus 88 IwvvDssD~-------~r~~e~~~~L~~lL~-eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs 159 (185)
T KOG0073|consen 88 IWVVDSSDR-------MRMQECKQELTELLV-EERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCS 159 (185)
T ss_pred EEEEECchH-------HHHHHHHHHHHHHHh-hhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEe
Confidence 999999873 334444444444433 455678999999999999843 3322 2233332 357899999
Q ss_pred cccCCCHHHHHHHHHHHhcc
Q 011082 461 AVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~l~~ 480 (494)
|.+|+++.+-++++..-+.+
T Consensus 160 ~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 160 AVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred ccccccHHHHHHHHHHHHHH
Confidence 99999998888888766544
No 187
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.60 E-value=2.2e-14 Score=157.09 Aligned_cols=152 Identities=26% Similarity=0.297 Sum_probs=106.7
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCc-ceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI-QITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
..+.|+++|.+|+|||||+++|.+........+..|.+.....+.+++. .+.++||||+.. +...+.+.+..
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~-------F~~~r~rga~~ 158 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEA-------FTSMRARGAKV 158 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcc-------hhhHHHhhhcc
Confidence 4568999999999999999999987655555566665555555566554 899999999865 32333456778
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh--HHHHHHHHHH------c-CCC
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYEELERR------V-QGV 454 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~--~e~~~~L~~~------~-~~~ 454 (494)
+|++++|+|+.+.. ..+....+..+.. .+.|.|+++||+|+... +...+.+.+. + ...
T Consensus 159 aDiaILVVda~dgv--------~~qT~e~i~~~~~-----~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~ 225 (587)
T TIGR00487 159 TDIVVLVVAADDGV--------MPQTIEAISHAKA-----ANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDT 225 (587)
T ss_pred CCEEEEEEECCCCC--------CHhHHHHHHHHHH-----cCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCc
Confidence 89999999987631 1222222222221 36899999999999642 3333444322 1 124
Q ss_pred CEEEEEcccCCCHHHHHHHHHH
Q 011082 455 PIYPVCAVLEEGVPELKVGLRM 476 (494)
Q Consensus 455 ~ii~ISA~~g~gI~~L~~~I~~ 476 (494)
+++++||++|+|+++|++.|..
T Consensus 226 ~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 226 IFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred eEEEEECCCCCChHHHHHhhhh
Confidence 7999999999999999999864
No 188
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.58 E-value=2.7e-14 Score=158.87 Aligned_cols=155 Identities=22% Similarity=0.305 Sum_probs=107.1
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeec----CcceEEecCCCccCCccccccchhhHHH
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD----DIQITVADIPGLIKGAHENRGLGHAFLR 379 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~----~~~~~l~DtPGli~~a~~~~~L~~~fl~ 379 (494)
...+.|+|+|.+|+|||||+++|++...........|.+.....+.+. +..+.++||||+.. +......
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~-------F~~mr~r 314 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA-------FSSMRSR 314 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHH-------HHHHHHH
Confidence 466799999999999999999999875544444455544433333332 37899999999854 3334456
Q ss_pred HHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh--HHHHHHHHHH------c
Q 011082 380 HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYEELERR------V 451 (494)
Q Consensus 380 ~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~--~e~~~~L~~~------~ 451 (494)
.+..+|++|+|+|+.+... .+....+..+.. .+.|+|+|+||+|+... +...+.+... +
T Consensus 315 g~~~aDiaILVVDA~dGv~--------~QT~E~I~~~k~-----~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~ 381 (742)
T CHL00189 315 GANVTDIAILIIAADDGVK--------PQTIEAINYIQA-----ANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKW 381 (742)
T ss_pred HHHHCCEEEEEEECcCCCC--------hhhHHHHHHHHh-----cCceEEEEEECCCccccCHHHHHHHHHHhccchHhh
Confidence 7889999999999876321 111122222221 36899999999999753 2333444322 1
Q ss_pred -CCCCEEEEEcccCCCHHHHHHHHHHHh
Q 011082 452 -QGVPIYPVCAVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 452 -~~~~ii~ISA~~g~gI~~L~~~I~~~l 478 (494)
...+++++||++|.|+++|++.|..+.
T Consensus 382 g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 382 GGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred CCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 136899999999999999999998764
No 189
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.58 E-value=2.6e-15 Score=155.39 Aligned_cols=159 Identities=25% Similarity=0.421 Sum_probs=118.8
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchh----hHHHH
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGH----AFLRH 380 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~----~fl~~ 380 (494)
..+++.|+|+||+|||||+|.++.+++.+.+|+|||.....|.+.+.-..++++||||+.+..-+..+... ..+.|
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAH 246 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAH 246 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHH
Confidence 44588999999999999999999999999999999999999999988889999999999886555443322 22556
Q ss_pred HHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH-------HHHHHHHHHcCC
Q 011082 381 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE-------EVYEELERRVQG 453 (494)
Q Consensus 381 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~-------e~~~~L~~~~~~ 453 (494)
++.| +||+.|+|.. .|....+++ .+...+. +-+.++|.|+|+||+|+...+ ++++.+.+. .+
T Consensus 247 Lraa--VLYfmDLSe~----CGySva~Qv-kLfhsIK---pLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~-~~ 315 (620)
T KOG1490|consen 247 LRSA--VLYFMDLSEM----CGYSVAAQV-KLYHSIK---PLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDD-GN 315 (620)
T ss_pred hhhh--heeeeechhh----hCCCHHHHH-HHHHHhH---HHhcCCceEEEeecccccCccccCHHHHHHHHHHHhc-cC
Confidence 6554 8999999973 333444443 3444443 456799999999999986542 223333332 35
Q ss_pred CCEEEEEcccCCCHHHHHHHH
Q 011082 454 VPIYPVCAVLEEGVPELKVGL 474 (494)
Q Consensus 454 ~~ii~ISA~~g~gI~~L~~~I 474 (494)
.+++..|+.+.+|+-++...-
T Consensus 316 v~v~~tS~~~eegVm~Vrt~A 336 (620)
T KOG1490|consen 316 VKVVQTSCVQEEGVMDVRTTA 336 (620)
T ss_pred ceEEEecccchhceeeHHHHH
Confidence 789999999999997755443
No 190
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.57 E-value=4.2e-14 Score=124.20 Aligned_cols=150 Identities=21% Similarity=0.254 Sum_probs=97.5
Q ss_pred eeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeec--CcceEEecCCCccCCccccccchhhHHHHHHhhceee
Q 011082 311 LVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD--DIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLA 388 (494)
Q Consensus 311 LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~--~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll 388 (494)
++|++|+|||||+++|++.......+..+........+... +..+.++|+||...... .....+..+|.++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~~~~i 73 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRS-------LRRLYYRGADGII 73 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHh-------HHHHHhcCCCEEE
Confidence 58999999999999999875433333333333333333322 46799999999865222 2244567899999
Q ss_pred EEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHH----HHHHcCCCCEEEEEcccC
Q 011082 389 YVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEE----LERRVQGVPIYPVCAVLE 464 (494)
Q Consensus 389 ~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~----L~~~~~~~~ii~ISA~~g 464 (494)
+|+|++.. ........+..... ........|+++|+||+|+......... ........+++++|+.++
T Consensus 74 ~v~d~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 145 (157)
T cd00882 74 LVYDVTDR-------ESFENVKEWLLLIL-INKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTG 145 (157)
T ss_pred EEEECcCH-------HHHHHHHHHHHHHH-HhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCC
Confidence 99999872 22233332211111 1122357999999999999765432221 222225678999999999
Q ss_pred CCHHHHHHHHH
Q 011082 465 EGVPELKVGLR 475 (494)
Q Consensus 465 ~gI~~L~~~I~ 475 (494)
.|+++++++|.
T Consensus 146 ~~i~~~~~~l~ 156 (157)
T cd00882 146 ENVEELFEELA 156 (157)
T ss_pred CChHHHHHHHh
Confidence 99999999875
No 191
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.56 E-value=2.2e-14 Score=131.48 Aligned_cols=163 Identities=19% Similarity=0.235 Sum_probs=118.9
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceee--cceeeEEeecC--cceEEecCCCccCCccccccchhhHHHH
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTL--RPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRH 380 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl--~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~ 380 (494)
.+-+|.++|.+|+|||||+|.+.+.+.... .+.|+ +.....+.+++ ..++||||.|..+..+ |+..|
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~q--ykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqs----Lg~aF--- 78 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQ--YKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQS----LGVAF--- 78 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHH--hccccchhheeeEEEEcCeEEEEEEEecccHHHhhh----cccce---
Confidence 345799999999999999999987643211 11121 22234455555 5679999999987544 33333
Q ss_pred HHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcc--cCCCCEEEEEeCCCcCChH------HHHHHHHHHcC
Q 011082 381 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEG--LSDRPSLVVANKIDEDGAE------EVYEELERRVQ 452 (494)
Q Consensus 381 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~--l~~~P~IlVlNKiDl~~~~------e~~~~L~~~~~ 452 (494)
++.+|++++|+|+.. ..+++.+..|..|+..+... -..-|.||+.||+|+.+.. ...........
T Consensus 79 YRgaDcCvlvydv~~-------~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~g 151 (210)
T KOG0394|consen 79 YRGADCCVLVYDVNN-------PKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKG 151 (210)
T ss_pred ecCCceEEEEeecCC-------hhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcC
Confidence 678999999999987 47788899999988766421 2357999999999997632 23344555557
Q ss_pred CCCEEEEEcccCCCHHHHHHHHHHHhcccCC
Q 011082 453 GVPIYPVCAVLEEGVPELKVGLRMLVNGEKS 483 (494)
Q Consensus 453 ~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~~ 483 (494)
+.++|++||+...|+++.+..+.+..-..+.
T Consensus 152 nipyfEtSAK~~~NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 152 NIPYFETSAKEATNVDEAFEEIARRALANED 182 (210)
T ss_pred CceeEEecccccccHHHHHHHHHHHHHhccc
Confidence 8999999999999999999999887655554
No 192
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.56 E-value=4.1e-14 Score=127.11 Aligned_cols=138 Identities=25% Similarity=0.305 Sum_probs=95.2
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhce
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 386 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ 386 (494)
.+|.|||+.+||||||+++|.+...... ....+.+.+ .++||||-+- ++..+.+.++.....||+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~---------KTq~i~~~~---~~IDTPGEyi---E~~~~y~aLi~ta~dad~ 66 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYK---------KTQAIEYYD---NTIDTPGEYI---ENPRFYHALIVTAQDADV 66 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcC---------ccceeEecc---cEEECChhhe---eCHHHHHHHHHHHhhCCE
Confidence 4799999999999999999998633211 111233333 4499999643 344566677777889999
Q ss_pred eeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHHc---CCCCEEEEEccc
Q 011082 387 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRV---QGVPIYPVCAVL 463 (494)
Q Consensus 387 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~---~~~~ii~ISA~~ 463 (494)
+++|.|++..... -|-. +.. ..++|+|-|+||+|+...++..+..++.+ .-..+|.||+.+
T Consensus 67 V~ll~dat~~~~~----~pP~-----------fa~-~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~ 130 (143)
T PF10662_consen 67 VLLLQDATEPRSV----FPPG-----------FAS-MFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVT 130 (143)
T ss_pred EEEEecCCCCCcc----CCch-----------hhc-ccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCC
Confidence 9999999874321 1111 111 23689999999999994333333333322 334689999999
Q ss_pred CCCHHHHHHHHH
Q 011082 464 EEGVPELKVGLR 475 (494)
Q Consensus 464 g~gI~~L~~~I~ 475 (494)
++||++|.++|.
T Consensus 131 ~eGi~eL~~~L~ 142 (143)
T PF10662_consen 131 GEGIEELKDYLE 142 (143)
T ss_pred CcCHHHHHHHHh
Confidence 999999999885
No 193
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=7.9e-15 Score=152.14 Aligned_cols=173 Identities=25% Similarity=0.272 Sum_probs=119.0
Q ss_pred eeccceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccC-Cccccccchh-hHHH
Q 011082 303 LKSIADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIK-GAHENRGLGH-AFLR 379 (494)
Q Consensus 303 lk~~~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~-~a~~~~~L~~-~fl~ 379 (494)
++.+..|+|+|+||+|||||+|+|++.+. -+++.++||.|.....+.++++++.+.||.|+-+ ....-..++- .-.+
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence 67788999999999999999999999865 4699999999999999999999999999999987 2111111221 2246
Q ss_pred HHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHh----hhcccCCCCEEEEEeCCCcCChH-HHHH----HHHHH
Q 011082 380 HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEH----HQEGLSDRPSLVVANKIDEDGAE-EVYE----ELERR 450 (494)
Q Consensus 380 ~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~----~~~~l~~~P~IlVlNKiDl~~~~-e~~~----~L~~~ 450 (494)
.++++|++++|+|+..... .......+.+ ..... +......+|.|+++||+|+...- +... .+...
T Consensus 345 ~~~~advi~~vvda~~~~t----~sd~~i~~~l-~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~ 419 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDT----ESDLKIARIL-ETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAE 419 (531)
T ss_pred HHhhcCEEEEEeccccccc----ccchHHHHHH-HHhccceEEEeccccccceEEEechhhccCccccccCCceeccccc
Confidence 6889999999999843111 1222222222 22111 11223468999999999998652 1111 11111
Q ss_pred c-CCCCE-EEEEcccCCCHHHHHHHHHHHhcc
Q 011082 451 V-QGVPI-YPVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 451 ~-~~~~i-i~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
. +..++ +++|+++++|++.|...|.+.+..
T Consensus 420 ~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 420 GRSVFPIVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred cCcccceEEEeeechhhhHHHHHHHHHHHHHH
Confidence 1 23344 459999999999999998776643
No 194
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=8.1e-14 Score=129.00 Aligned_cols=159 Identities=18% Similarity=0.210 Sum_probs=115.1
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccc-cceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHY-SFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~-~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
.+|.++|..++||||||+++.-.... .+| +...++...-.+.+.| .++.+|||.|..+.. ...-.+++.
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd-~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFr-------slipsY~Rd 94 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------SLIPSYIRD 94 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhc-ccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHh-------hhhhhhccC
Confidence 57999999999999999999865322 112 1112344445566666 678999999998732 233467899
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHH----HHHHHHcCCCCEEEE
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVY----EELERRVQGVPIYPV 459 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~----~~L~~~~~~~~ii~I 459 (494)
+.++|.|+|+++ ..++++...|++.+..... -.+.-+++|.||.||.+..+.. +...+.+ +..++.+
T Consensus 95 s~vaviVyDit~-------~~Sfe~t~kWi~dv~~e~g-s~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel-~a~f~et 165 (221)
T KOG0094|consen 95 SSVAVIVYDITD-------RNSFENTSKWIEDVRRERG-SDDVIIFLVGNKTDLSDKRQVSIEEGERKAKEL-NAEFIET 165 (221)
T ss_pred CeEEEEEEeccc-------cchHHHHHHHHHHHHhccC-CCceEEEEEcccccccchhhhhHHHHHHHHHHh-CcEEEEe
Confidence 999999999998 5889999999998876532 1123445556999999865332 1222222 5578999
Q ss_pred EcccCCCHHHHHHHHHHHhcccC
Q 011082 460 CAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
||+.|.||.+|+..|...+....
T Consensus 166 sak~g~NVk~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 166 SAKAGENVKQLFRRIAAALPGME 188 (221)
T ss_pred cccCCCCHHHHHHHHHHhccCcc
Confidence 99999999999999999887653
No 195
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.55 E-value=8.4e-14 Score=153.53 Aligned_cols=154 Identities=21% Similarity=0.226 Sum_probs=106.3
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCC---CcccccceeecceeeEEee-cCcceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKP---AVGHYSFTTLRPNLGNMNF-DDIQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~---~i~~~~ftTl~p~~g~v~~-~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
.|+++|..++|||||+++|++... ........|++.....+.. ++..+.++||||+.. +....+..+..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~-------fi~~m~~g~~~ 74 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK-------FLSNMLAGVGG 74 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH-------HHHHHHHHhhc
Confidence 589999999999999999998532 1122345565554444444 346789999999854 44456677888
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCC-EEEEEeCCCcCChH---HHHHHHHHHc-----CCC
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP-SLVVANKIDEDGAE---EVYEELERRV-----QGV 454 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P-~IlVlNKiDl~~~~---e~~~~L~~~~-----~~~ 454 (494)
+|++++|+|+... ...+....+..+.. .+.| .|+|+||+|+.+.+ ...+++.+.+ ...
T Consensus 75 ~D~~lLVVda~eg--------~~~qT~ehl~il~~-----lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~ 141 (614)
T PRK10512 75 IDHALLVVACDDG--------VMAQTREHLAILQL-----TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEA 141 (614)
T ss_pred CCEEEEEEECCCC--------CcHHHHHHHHHHHH-----cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999998863 22233333332322 2455 47899999998643 2234444443 236
Q ss_pred CEEEEEcccCCCHHHHHHHHHHHhccc
Q 011082 455 PIYPVCAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 455 ~ii~ISA~~g~gI~~L~~~I~~~l~~~ 481 (494)
++|+|||++|+|+++|++.|..+....
T Consensus 142 ~ii~VSA~tG~gI~~L~~~L~~~~~~~ 168 (614)
T PRK10512 142 KLFVTAATEGRGIDALREHLLQLPERE 168 (614)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhhccc
Confidence 899999999999999999999876654
No 196
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.54 E-value=1.4e-13 Score=151.41 Aligned_cols=156 Identities=23% Similarity=0.294 Sum_probs=106.5
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcc---------cc------cceeecceeeEEee---cC--cceEEecCCCccC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVG---------HY------SFTTLRPNLGNMNF---DD--IQITVADIPGLIK 365 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~---------~~------~ftTl~p~~g~v~~---~~--~~~~l~DtPGli~ 365 (494)
+.+|+|||..++|||||+++|......+. ++ ...|.....-.+.+ ++ ..+.+|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 34899999999999999999976421111 11 13344333333433 22 6789999999976
Q ss_pred CccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh--HHH
Q 011082 366 GAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEV 443 (494)
Q Consensus 366 ~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~--~e~ 443 (494)
+.......+..||++|+|+|+++.. .......+...+. .+.|.|+|+||+|+... ++.
T Consensus 83 -------F~~~v~~~l~~aD~aILVvDat~g~-------~~qt~~~~~~~~~------~~ipiIiViNKiDl~~~~~~~~ 142 (595)
T TIGR01393 83 -------FSYEVSRSLAACEGALLLVDAAQGI-------EAQTLANVYLALE------NDLEIIPVINKIDLPSADPERV 142 (595)
T ss_pred -------HHHHHHHHHHhCCEEEEEecCCCCC-------CHhHHHHHHHHHH------cCCCEEEEEECcCCCccCHHHH
Confidence 3445567789999999999998731 2223333322221 25799999999999643 334
Q ss_pred HHHHHHHcC--CCCEEEEEcccCCCHHHHHHHHHHHhccc
Q 011082 444 YEELERRVQ--GVPIYPVCAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 444 ~~~L~~~~~--~~~ii~ISA~~g~gI~~L~~~I~~~l~~~ 481 (494)
.+++.+.+. ...++++||++|.|+++|++.|.+.+...
T Consensus 143 ~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 143 KKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred HHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 455655542 12589999999999999999999888654
No 197
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=4.9e-14 Score=132.05 Aligned_cols=159 Identities=17% Similarity=0.179 Sum_probs=121.1
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHH
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHI 381 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i 381 (494)
.-..+|.|||.+++|||-||.+++.......+.....+......+.+++ ....||||.|..+... -.-.++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrA-------itSaYY 84 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRA-------ITSAYY 84 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhcc-------ccchhh
Confidence 4455799999999999999999998866555554444555556667777 5679999999977321 123567
Q ss_pred HhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHHHHHHHHcCCCCEE
Q 011082 382 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIY 457 (494)
Q Consensus 382 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~~~L~~~~~~~~ii 457 (494)
+.|-..++|+|++. ...++.+..|+.||..+.. .+.++++|.||+||... .+.-+.+.+. .+..++
T Consensus 85 rgAvGAllVYDITr-------~~Tfenv~rWL~ELRdhad--~nivimLvGNK~DL~~lraV~te~~k~~Ae~-~~l~f~ 154 (222)
T KOG0087|consen 85 RGAVGALLVYDITR-------RQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLNHLRAVPTEDGKAFAEK-EGLFFL 154 (222)
T ss_pred cccceeEEEEechh-------HHHHHHHHHHHHHHHhcCC--CCeEEEEeecchhhhhccccchhhhHhHHHh-cCceEE
Confidence 78889999999987 4778899999999988764 37899999999999763 3334445544 367899
Q ss_pred EEEcccCCCHHHHHHHHHHHhc
Q 011082 458 PVCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 458 ~ISA~~g~gI~~L~~~I~~~l~ 479 (494)
++||+...+++..+..+...+.
T Consensus 155 EtSAl~~tNVe~aF~~~l~~I~ 176 (222)
T KOG0087|consen 155 ETSALDATNVEKAFERVLTEIY 176 (222)
T ss_pred EecccccccHHHHHHHHHHHHH
Confidence 9999999999998877665543
No 198
>CHL00071 tufA elongation factor Tu
Probab=99.53 E-value=1.2e-13 Score=145.99 Aligned_cols=153 Identities=22% Similarity=0.278 Sum_probs=103.5
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCc----------------ccccceeecceeeEEeecCcceEEecCCCccCCcccc
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAV----------------GHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN 370 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i----------------~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~ 370 (494)
..|+++|.+|+|||||+++|++....+ ......|++...-.+..++.++.++||||+.+
T Consensus 13 ~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~----- 87 (409)
T CHL00071 13 VNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD----- 87 (409)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH-----
Confidence 479999999999999999998742111 11245666665545555667899999999642
Q ss_pred ccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCC-EEEEEeCCCcCChHHHHH----
Q 011082 371 RGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP-SLVVANKIDEDGAEEVYE---- 445 (494)
Q Consensus 371 ~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P-~IlVlNKiDl~~~~e~~~---- 445 (494)
+.......+..+|++++|+|+... ...+...++..+.. ...| .|+++||+|+.+.++..+
T Consensus 88 --~~~~~~~~~~~~D~~ilVvda~~g--------~~~qt~~~~~~~~~-----~g~~~iIvvvNK~D~~~~~~~~~~~~~ 152 (409)
T CHL00071 88 --YVKNMITGAAQMDGAILVVSAADG--------PMPQTKEHILLAKQ-----VGVPNIVVFLNKEDQVDDEELLELVEL 152 (409)
T ss_pred --HHHHHHHHHHhCCEEEEEEECCCC--------CcHHHHHHHHHHHH-----cCCCEEEEEEEccCCCCHHHHHHHHHH
Confidence 445556778899999999998763 22334444443332 2568 667899999987544332
Q ss_pred HHHHHc-----C--CCCEEEEEcccCCC------------------HHHHHHHHHHHhc
Q 011082 446 ELERRV-----Q--GVPIYPVCAVLEEG------------------VPELKVGLRMLVN 479 (494)
Q Consensus 446 ~L~~~~-----~--~~~ii~ISA~~g~g------------------I~~L~~~I~~~l~ 479 (494)
++.+.+ + ..+++++||+++.+ +..|++.|...+.
T Consensus 153 ~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~ 211 (409)
T CHL00071 153 EVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIP 211 (409)
T ss_pred HHHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCC
Confidence 333332 1 26899999998863 5677777777653
No 199
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.52 E-value=9.4e-14 Score=147.50 Aligned_cols=146 Identities=23% Similarity=0.303 Sum_probs=97.4
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCc-------------------------cc------ccceeecceeeEEeecCcce
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAV-------------------------GH------YSFTTLRPNLGNMNFDDIQI 355 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i-------------------------~~------~~ftTl~p~~g~v~~~~~~~ 355 (494)
-+|+++|.+|+|||||+++|+...-.+ .+ .+.+|.+.....+..++..+
T Consensus 7 ~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~i 86 (425)
T PRK12317 7 LNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYYF 86 (425)
T ss_pred EEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCeEE
Confidence 479999999999999999998432111 01 46688888888888888999
Q ss_pred EEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCC
Q 011082 356 TVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKI 435 (494)
Q Consensus 356 ~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKi 435 (494)
.++||||+.+ +.......+..+|++++|+|+++.. +.. .+....+..+.. +...|.|+|+||+
T Consensus 87 ~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvDa~~~~----~~~--~~~~~~~~~~~~----~~~~~iivviNK~ 149 (425)
T PRK12317 87 TIVDCPGHRD-------FVKNMITGASQADAAVLVVAADDAG----GVM--PQTREHVFLART----LGINQLIVAINKM 149 (425)
T ss_pred EEEECCCccc-------chhhHhhchhcCCEEEEEEEcccCC----CCC--cchHHHHHHHHH----cCCCeEEEEEEcc
Confidence 9999999743 3333445567899999999998620 011 111112222221 1234688899999
Q ss_pred CcCCh-H----HHHHHHHHHc---C----CCCEEEEEcccCCCHHH
Q 011082 436 DEDGA-E----EVYEELERRV---Q----GVPIYPVCAVLEEGVPE 469 (494)
Q Consensus 436 Dl~~~-~----e~~~~L~~~~---~----~~~ii~ISA~~g~gI~~ 469 (494)
|+... . ...+++.+.+ . ..++++|||++|+|+++
T Consensus 150 Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 150 DAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred ccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 99752 1 1223333332 1 35799999999999986
No 200
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.52 E-value=2.4e-13 Score=129.18 Aligned_cols=165 Identities=19% Similarity=0.182 Sum_probs=108.0
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCccc--ccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHH----H
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGH--YSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRH----I 381 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~--~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~----i 381 (494)
+|+|||.||||||||+|+|++.+..... .+..|..+..+...+++..+.++||||+.+.......+.....+. .
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~ 81 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSA 81 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcC
Confidence 5899999999999999999998665433 356777888888888889999999999987533221222222222 2
Q ss_pred HhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----------HHHHHHHHHc
Q 011082 382 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----------EVYEELERRV 451 (494)
Q Consensus 382 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----------e~~~~L~~~~ 451 (494)
...|++|+|+|+.. .. .....++..+......-..++.|+|+|+.|..... ..+..+.+.+
T Consensus 82 ~g~~~illVi~~~~-~t--------~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c 152 (196)
T cd01852 82 PGPHAFLLVVPLGR-FT--------EEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKC 152 (196)
T ss_pred CCCEEEEEEEECCC-cC--------HHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHh
Confidence 45689999999875 11 22233344443321111236889999999976532 2222233333
Q ss_pred CCCCEEEEE-----cccCCCHHHHHHHHHHHhcccC
Q 011082 452 QGVPIYPVC-----AVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 452 ~~~~ii~IS-----A~~g~gI~~L~~~I~~~l~~~~ 482 (494)
+..++.++ +..+.++++|++.|.+++.+..
T Consensus 153 -~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~ 187 (196)
T cd01852 153 -GGRYVAFNNKAKGEEQEQQVKELLAKVESMVKENG 187 (196)
T ss_pred -CCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHhcC
Confidence 22444454 4567889999999999998743
No 201
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.52 E-value=4.1e-13 Score=131.73 Aligned_cols=124 Identities=23% Similarity=0.383 Sum_probs=84.3
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCc------------cc------ccceeecceeeEEeecCcceEEecCCCccCCccc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAV------------GH------YSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE 369 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i------------~~------~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~ 369 (494)
.|+++|.+|+|||||+++|+...-.+ .+ ....|+......+.+.+..+.++||||+.+
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~---- 76 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMD---- 76 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccc----
Confidence 48999999999999999997531110 11 112344445566677788999999999965
Q ss_pred cccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCC--hHHHHHHH
Q 011082 370 NRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDG--AEEVYEEL 447 (494)
Q Consensus 370 ~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~--~~e~~~~L 447 (494)
+......++..+|.+++|+|+++. ...+...++..+.. .+.|.++++||+|+.. .++.++.+
T Consensus 77 ---f~~~~~~~l~~aD~~IlVvd~~~g--------~~~~~~~~~~~~~~-----~~~P~iivvNK~D~~~a~~~~~~~~i 140 (237)
T cd04168 77 ---FIAEVERSLSVLDGAILVISAVEG--------VQAQTRILWRLLRK-----LNIPTIIFVNKIDRAGADLEKVYQEI 140 (237)
T ss_pred ---hHHHHHHHHHHhCeEEEEEeCCCC--------CCHHHHHHHHHHHH-----cCCCEEEEEECccccCCCHHHHHHHH
Confidence 444556788899999999999873 12234444444433 2689999999999874 33444444
Q ss_pred HHHc
Q 011082 448 ERRV 451 (494)
Q Consensus 448 ~~~~ 451 (494)
++.+
T Consensus 141 ~~~~ 144 (237)
T cd04168 141 KEKL 144 (237)
T ss_pred HHHH
Confidence 4433
No 202
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.52 E-value=2e-13 Score=149.47 Aligned_cols=154 Identities=25% Similarity=0.241 Sum_probs=95.6
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEee------------------cCcceEEecCCCccCCc
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNF------------------DDIQITVADIPGLIKGA 367 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~------------------~~~~~~l~DtPGli~~a 367 (494)
.+.|+++|.+|+||||||++|++..........+|.+.....+.. ....+.++||||+..
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~-- 81 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA-- 81 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh--
Confidence 458999999999999999999987443222222222111111111 112488999999754
Q ss_pred cccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH------
Q 011082 368 HENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE------ 441 (494)
Q Consensus 368 ~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~------ 441 (494)
+.......+..+|++++|+|+++... ..... .+..+.. .+.|.|+|+||+|+....
T Consensus 82 -----f~~l~~~~~~~aD~~IlVvD~~~g~~-------~qt~e-~i~~l~~-----~~vpiIVv~NK~Dl~~~~~~~~~~ 143 (590)
T TIGR00491 82 -----FTNLRKRGGALADLAILIVDINEGFK-------PQTQE-ALNILRM-----YKTPFVVAANKIDRIPGWRSHEGR 143 (590)
T ss_pred -----HHHHHHHHHhhCCEEEEEEECCcCCC-------HhHHH-HHHHHHH-----cCCCEEEEEECCCccchhhhccCc
Confidence 22233456788999999999986321 11121 1222221 268999999999996310
Q ss_pred -----------HHH-----------HHHHH-------------HcCCCCEEEEEcccCCCHHHHHHHHHHHhc
Q 011082 442 -----------EVY-----------EELER-------------RVQGVPIYPVCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 442 -----------e~~-----------~~L~~-------------~~~~~~ii~ISA~~g~gI~~L~~~I~~~l~ 479 (494)
.+. ..|.+ .....++++|||++|+|+++|.++|..+..
T Consensus 144 ~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 144 PFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 000 01111 112468999999999999999998865443
No 203
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.52 E-value=3.1e-13 Score=130.06 Aligned_cols=154 Identities=18% Similarity=0.216 Sum_probs=101.5
Q ss_pred ceeeeeCCCCCcHHHHHHHH-HcCCCCcccccceeecceeeEEee--cC--cceEEecCCCccCCccccccchhhHHHHH
Q 011082 307 ADVGLVGMPSAGKSTLLGAI-SRAKPAVGHYSFTTLRPNLGNMNF--DD--IQITVADIPGLIKGAHENRGLGHAFLRHI 381 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~L-t~~~~~i~~~~ftTl~p~~g~v~~--~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i 381 (494)
.+|+|+|++|||||||++++ ++... ..| .+|.........+ ++ ..+.++||+|... +.......+
T Consensus 10 ~kv~liG~~g~GKTtLi~~~~~~~~~--~~~-~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~-------~~~~~~~~~ 79 (215)
T PTZ00132 10 FKLILVGDGGVGKTTFVKRHLTGEFE--KKY-IPTLGVEVHPLKFYTNCGPICFNVWDTAGQEK-------FGGLRDGYY 79 (215)
T ss_pred ceEEEECCCCCCHHHHHHHHHhCCCC--CCC-CCccceEEEEEEEEECCeEEEEEEEECCCchh-------hhhhhHHHh
Confidence 37999999999999999754 44311 112 1233333222222 22 6789999999743 111223345
Q ss_pred HhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH---HHHHHHHHHcCCCCEEE
Q 011082 382 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYP 458 (494)
Q Consensus 382 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~---e~~~~L~~~~~~~~ii~ 458 (494)
..++++++|+|+++ ..++..+..+...+.... .+.|+++|+||+|+.... +.. .+.+. .+..+++
T Consensus 80 ~~~~~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~---~~~~i~lv~nK~Dl~~~~~~~~~~-~~~~~-~~~~~~e 147 (215)
T PTZ00132 80 IKGQCAIIMFDVTS-------RITYKNVPNWHRDIVRVC---ENIPIVLVGNKVDVKDRQVKARQI-TFHRK-KNLQYYD 147 (215)
T ss_pred ccCCEEEEEEECcC-------HHHHHHHHHHHHHHHHhC---CCCCEEEEEECccCccccCCHHHH-HHHHH-cCCEEEE
Confidence 67899999999987 345566666666655432 468999999999986432 212 22232 3567899
Q ss_pred EEcccCCCHHHHHHHHHHHhcccC
Q 011082 459 VCAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 459 ISA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
+||+++.|+++++.+|.+.+...+
T Consensus 148 ~Sa~~~~~v~~~f~~ia~~l~~~p 171 (215)
T PTZ00132 148 ISAKSNYNFEKPFLWLARRLTNDP 171 (215)
T ss_pred EeCCCCCCHHHHHHHHHHHHhhcc
Confidence 999999999999999988776543
No 204
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.52 E-value=2.2e-13 Score=149.53 Aligned_cols=156 Identities=21% Similarity=0.257 Sum_probs=113.4
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCC------cc----------cccceeecceeeEEeecCcceEEecCCCccCCcccc
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPA------VG----------HYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN 370 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~------i~----------~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~ 370 (494)
..|+|+|..++|||||+++|+...-. +. .....|+......+.+.+..+.++||||+.+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~D----- 76 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHAD----- 76 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHH-----
Confidence 47999999999999999999753111 11 1123566666667788889999999999865
Q ss_pred ccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh--HHHHHHHH
Q 011082 371 RGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYEELE 448 (494)
Q Consensus 371 ~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~--~e~~~~L~ 448 (494)
+.......+..+|.+++|+|+.. .+..+...++..+.. .+.|.|+|+||+|+... ++..+++.
T Consensus 77 --F~~ev~~~l~~aD~alLVVDa~~--------G~~~qT~~~l~~a~~-----~~ip~IVviNKiD~~~a~~~~v~~ei~ 141 (594)
T TIGR01394 77 --FGGEVERVLGMVDGVLLLVDASE--------GPMPQTRFVLKKALE-----LGLKPIVVINKIDRPSARPDEVVDEVF 141 (594)
T ss_pred --HHHHHHHHHHhCCEEEEEEeCCC--------CCcHHHHHHHHHHHH-----CCCCEEEEEECCCCCCcCHHHHHHHHH
Confidence 44456677889999999999986 233444555555443 26799999999998653 34444444
Q ss_pred HHc---------CCCCEEEEEcccCC----------CHHHHHHHHHHHhcccC
Q 011082 449 RRV---------QGVPIYPVCAVLEE----------GVPELKVGLRMLVNGEK 482 (494)
Q Consensus 449 ~~~---------~~~~ii~ISA~~g~----------gI~~L~~~I~~~l~~~~ 482 (494)
+.+ ...+++++||+++. |++.|++.|.+.+....
T Consensus 142 ~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~ 194 (594)
T TIGR01394 142 DLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK 194 (594)
T ss_pred HHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence 443 13579999999995 79999999999887543
No 205
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.52 E-value=1.4e-13 Score=145.33 Aligned_cols=155 Identities=23% Similarity=0.291 Sum_probs=99.6
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCc---ccccceeecceeeE--------------------------EeecCcceEEe
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAV---GHYSFTTLRPNLGN--------------------------MNFDDIQITVA 358 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i---~~~~ftTl~p~~g~--------------------------v~~~~~~~~l~ 358 (494)
+|+++|.+++|||||+++|++..... .-....|+...... ....+..+.++
T Consensus 6 ~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~li 85 (406)
T TIGR03680 6 NIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVSFV 85 (406)
T ss_pred EEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEEEE
Confidence 69999999999999999998752210 00011111111000 00113578999
Q ss_pred cCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcC
Q 011082 359 DIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDED 438 (494)
Q Consensus 359 DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~ 438 (494)
||||+.+ +...+...+..+|++++|+|+++.. +..+....+..+.. +..+|.|+|+||+|+.
T Consensus 86 DtPGh~~-------f~~~~~~g~~~aD~aIlVVDa~~g~-------~~~qt~e~l~~l~~----~gi~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 86 DAPGHET-------LMATMLSGAALMDGALLVIAANEPC-------PQPQTKEHLMALEI----IGIKNIVIVQNKIDLV 147 (406)
T ss_pred ECCCHHH-------HHHHHHHHHHHCCEEEEEEECCCCc-------cccchHHHHHHHHH----cCCCeEEEEEEccccC
Confidence 9999854 4456677778889999999998632 01122222222221 2235789999999998
Q ss_pred ChHH---HHHHHHHHc-----CCCCEEEEEcccCCCHHHHHHHHHHHhcc
Q 011082 439 GAEE---VYEELERRV-----QGVPIYPVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 439 ~~~e---~~~~L~~~~-----~~~~ii~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
+.+. ..+.+.+.+ ...+++++||++++|+++|+++|...+..
T Consensus 148 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~ 197 (406)
T TIGR03680 148 SKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPT 197 (406)
T ss_pred CHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCC
Confidence 6532 233444333 24679999999999999999999987653
No 206
>PRK12736 elongation factor Tu; Reviewed
Probab=99.52 E-value=1.9e-13 Score=143.73 Aligned_cols=155 Identities=20% Similarity=0.237 Sum_probs=103.0
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCC----------------cccccceeecceeeEEeecCcceEEecCCCccCCccc
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPA----------------VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE 369 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~----------------i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~ 369 (494)
.-+|+++|..++|||||+++|++.... .......|++...-.+..++..+.++||||+.+
T Consensus 12 ~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~---- 87 (394)
T PRK12736 12 HVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD---- 87 (394)
T ss_pred eeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH----
Confidence 347999999999999999999863110 011334566554334444557899999999753
Q ss_pred cccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCC-EEEEEeCCCcCChHHHHH---
Q 011082 370 NRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP-SLVVANKIDEDGAEEVYE--- 445 (494)
Q Consensus 370 ~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P-~IlVlNKiDl~~~~e~~~--- 445 (494)
+.......+..+|++++|+|+.... ..+...++..+.. ...| .|+|+||+|+.+.++..+
T Consensus 88 ---f~~~~~~~~~~~d~~llVvd~~~g~--------~~~t~~~~~~~~~-----~g~~~~IvviNK~D~~~~~~~~~~i~ 151 (394)
T PRK12736 88 ---YVKNMITGAAQMDGAILVVAATDGP--------MPQTREHILLARQ-----VGVPYLVVFLNKVDLVDDEELLELVE 151 (394)
T ss_pred ---HHHHHHHHHhhCCEEEEEEECCCCC--------chhHHHHHHHHHH-----cCCCEEEEEEEecCCcchHHHHHHHH
Confidence 4445566677889999999987631 2222333333322 2567 567899999985543332
Q ss_pred -HHHHHc-------CCCCEEEEEcccCC--------CHHHHHHHHHHHhcc
Q 011082 446 -ELERRV-------QGVPIYPVCAVLEE--------GVPELKVGLRMLVNG 480 (494)
Q Consensus 446 -~L~~~~-------~~~~ii~ISA~~g~--------gI~~L~~~I~~~l~~ 480 (494)
++.+.+ ...+++++||+++. ++++|++.|...+..
T Consensus 152 ~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~ 202 (394)
T PRK12736 152 MEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPT 202 (394)
T ss_pred HHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCC
Confidence 333332 13589999999983 688999999888764
No 207
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=1.3e-13 Score=122.10 Aligned_cols=159 Identities=18% Similarity=0.233 Sum_probs=118.0
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHH
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHI 381 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i 381 (494)
+-..+|.|||..|+|||.|++.++.--...+.-....++..+.++.+++ ..+.+|||.|..+ +.....+++
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqer-------frsitqsyy 77 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQER-------FRSITQSYY 77 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHH-------HHHHHHHHh
Confidence 3456899999999999999999996522222111122444566777777 5789999999876 333345678
Q ss_pred HhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHHc---CCCCEEE
Q 011082 382 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRV---QGVPIYP 458 (494)
Q Consensus 382 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~---~~~~ii~ 458 (494)
+.++.+++|+|++. ..++.-+-+|+.|++.|+. ...-.|+|.||+|+.+..++-+.+.+.+ ...-++.
T Consensus 78 rsahalilvydisc-------qpsfdclpewlreie~yan--~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfle 148 (213)
T KOG0095|consen 78 RSAHALILVYDISC-------QPSFDCLPEWLREIEQYAN--NKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLE 148 (213)
T ss_pred hhcceEEEEEeccc-------CcchhhhHHHHHHHHHHhh--cceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhh
Confidence 88999999999997 4678888999999999964 2456688889999988766555544443 3445789
Q ss_pred EEcccCCCHHHHHHHHHHHh
Q 011082 459 VCAVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 459 ISA~~g~gI~~L~~~I~~~l 478 (494)
+||+..++++.|+..+.-.|
T Consensus 149 tsakea~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 149 TSAKEADNVEKLFLDLACRL 168 (213)
T ss_pred hcccchhhHHHHHHHHHHHH
Confidence 99999999999998876544
No 208
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.51 E-value=1e-13 Score=134.23 Aligned_cols=149 Identities=22% Similarity=0.300 Sum_probs=95.3
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCC-------------------------c------ccccceeecceeeEEeecCcceE
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPA-------------------------V------GHYSFTTLRPNLGNMNFDDIQIT 356 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~-------------------------i------~~~~ftTl~p~~g~v~~~~~~~~ 356 (494)
.|+++|.+++|||||+.+|....-. + .....+|++.....+.+.+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 4899999999999999999532100 0 11234677777778888889999
Q ss_pred EecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCC
Q 011082 357 VADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKID 436 (494)
Q Consensus 357 l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiD 436 (494)
++||||+.. +...+...+..+|++|+|+|+++.... .......+....+..+. .+..+|+|+|+||+|
T Consensus 81 liDtpG~~~-------~~~~~~~~~~~~d~~i~VvDa~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~iiivvNK~D 148 (219)
T cd01883 81 ILDAPGHRD-------FVPNMITGASQADVAVLVVDARKGEFE-AGFEKGGQTREHALLAR----TLGVKQLIVAVNKMD 148 (219)
T ss_pred EEECCChHH-------HHHHHHHHhhhCCEEEEEEECCCCccc-cccccccchHHHHHHHH----HcCCCeEEEEEEccc
Confidence 999999754 334456677889999999999873100 00001111111111111 222368888999999
Q ss_pred cCCh-------HHHHHHHHHHc-------CCCCEEEEEcccCCCHH
Q 011082 437 EDGA-------EEVYEELERRV-------QGVPIYPVCAVLEEGVP 468 (494)
Q Consensus 437 l~~~-------~e~~~~L~~~~-------~~~~ii~ISA~~g~gI~ 468 (494)
+... +.+.+.+...+ ...++++|||++|+||+
T Consensus 149 l~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 149 DVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 9731 12233333222 13679999999999987
No 209
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=1.5e-13 Score=121.57 Aligned_cols=167 Identities=16% Similarity=0.199 Sum_probs=126.1
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHH
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHI 381 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i 381 (494)
....++.++|...+|||||+.+.++....++-+....++....++.-.+ ..+.+|||.|... +..-.-.++
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEr-------yrtiTTayy 91 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQER-------YRTITTAYY 91 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchh-------hhHHHHHHh
Confidence 4455899999999999999999988754443333223333344444444 5689999999876 333344678
Q ss_pred HhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEE
Q 011082 382 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIY 457 (494)
Q Consensus 382 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii 457 (494)
+.++.+++++|+++ .+++..++.+...++.|.. .+.|+|+|.||||+.+.. +.-..+.+.+ +..+|
T Consensus 92 RgamgfiLmyDitN-------eeSf~svqdw~tqIktysw--~naqvilvgnKCDmd~eRvis~e~g~~l~~~L-GfefF 161 (193)
T KOG0093|consen 92 RGAMGFILMYDITN-------EESFNSVQDWITQIKTYSW--DNAQVILVGNKCDMDSERVISHERGRQLADQL-GFEFF 161 (193)
T ss_pred hccceEEEEEecCC-------HHHHHHHHHHHHHheeeec--cCceEEEEecccCCccceeeeHHHHHHHHHHh-ChHHh
Confidence 89999999999997 4788899999999888854 489999999999998653 3344455555 67899
Q ss_pred EEEcccCCCHHHHHHHHHHHhcccCCcccc
Q 011082 458 PVCAVLEEGVPELKVGLRMLVNGEKSERLS 487 (494)
Q Consensus 458 ~ISA~~g~gI~~L~~~I~~~l~~~~~~~~~ 487 (494)
+.||+.+.|++++++.+...+.....+..+
T Consensus 162 EtSaK~NinVk~~Fe~lv~~Ic~kmsesl~ 191 (193)
T KOG0093|consen 162 ETSAKENINVKQVFERLVDIICDKMSESLD 191 (193)
T ss_pred hhcccccccHHHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999999988776665544
No 210
>PRK10218 GTP-binding protein; Provisional
Probab=99.51 E-value=4.5e-13 Score=147.11 Aligned_cols=158 Identities=20% Similarity=0.255 Sum_probs=112.8
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCCc----------------ccccceeecceeeEEeecCcceEEecCCCccCCcc
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPAV----------------GHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAH 368 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i----------------~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~ 368 (494)
.+.+|+++|..++|||||+++|+...-.+ ......|+......+.+++..+.++||||+.+
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~d--- 80 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHAD--- 80 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcch---
Confidence 35589999999999999999998631111 11234555556667777788999999999865
Q ss_pred ccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh--HHHHHH
Q 011082 369 ENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYEE 446 (494)
Q Consensus 369 ~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~--~e~~~~ 446 (494)
+...+...+..+|.+|+|+|+.+. +..+...++..+.. .+.|.|+|+||+|+... ++.+++
T Consensus 81 ----f~~~v~~~l~~aDg~ILVVDa~~G--------~~~qt~~~l~~a~~-----~gip~IVviNKiD~~~a~~~~vl~e 143 (607)
T PRK10218 81 ----FGGEVERVMSMVDSVLLVVDAFDG--------PMPQTRFVTKKAFA-----YGLKPIVVINKVDRPGARPDWVVDQ 143 (607)
T ss_pred ----hHHHHHHHHHhCCEEEEEEecccC--------ccHHHHHHHHHHHH-----cCCCEEEEEECcCCCCCchhHHHHH
Confidence 444556778999999999999862 22333444443322 36899999999998753 344444
Q ss_pred HHHHc---------CCCCEEEEEcccCC----------CHHHHHHHHHHHhcccC
Q 011082 447 LERRV---------QGVPIYPVCAVLEE----------GVPELKVGLRMLVNGEK 482 (494)
Q Consensus 447 L~~~~---------~~~~ii~ISA~~g~----------gI~~L~~~I~~~l~~~~ 482 (494)
+...+ ...+++++||++|. |+..|++.|.+.+....
T Consensus 144 i~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~ 198 (607)
T PRK10218 144 VFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD 198 (607)
T ss_pred HHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence 44443 13679999999998 68999999998886543
No 211
>PRK12735 elongation factor Tu; Reviewed
Probab=99.50 E-value=2e-13 Score=143.63 Aligned_cols=153 Identities=23% Similarity=0.258 Sum_probs=101.8
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCC-----CC-----------cccccceeecceeeEEeecCcceEEecCCCccCCcccc
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAK-----PA-----------VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN 370 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~-----~~-----------i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~ 370 (494)
-.|+++|.+++|||||+++|++.. .. .......|++.....+..++..+.++||||+.+
T Consensus 13 ~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~----- 87 (396)
T PRK12735 13 VNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD----- 87 (396)
T ss_pred EEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH-----
Confidence 479999999999999999998621 00 011334565554444445567899999999743
Q ss_pred ccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEE-EEEeCCCcCChHHHHH----
Q 011082 371 RGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSL-VVANKIDEDGAEEVYE---- 445 (494)
Q Consensus 371 ~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~I-lVlNKiDl~~~~e~~~---- 445 (494)
+.......+..+|++++|+|+... +..+...++..+.. ...|.| +|+||+|+.+.++..+
T Consensus 88 --f~~~~~~~~~~aD~~llVvda~~g--------~~~qt~e~l~~~~~-----~gi~~iivvvNK~Dl~~~~~~~~~~~~ 152 (396)
T PRK12735 88 --YVKNMITGAAQMDGAILVVSAADG--------PMPQTREHILLARQ-----VGVPYIVVFLNKCDMVDDEELLELVEM 152 (396)
T ss_pred --HHHHHHhhhccCCEEEEEEECCCC--------CchhHHHHHHHHHH-----cCCCeEEEEEEecCCcchHHHHHHHHH
Confidence 444556667788999999998762 22233333333322 257866 5789999975433222
Q ss_pred HHHHHc-----C--CCCEEEEEcccCC----------CHHHHHHHHHHHhc
Q 011082 446 ELERRV-----Q--GVPIYPVCAVLEE----------GVPELKVGLRMLVN 479 (494)
Q Consensus 446 ~L~~~~-----~--~~~ii~ISA~~g~----------gI~~L~~~I~~~l~ 479 (494)
++...+ . ..+++++||+++. ++.+|++.|...+.
T Consensus 153 ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 153 EVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 233222 1 3689999999984 78899999988765
No 212
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.50 E-value=6.3e-13 Score=129.33 Aligned_cols=150 Identities=26% Similarity=0.305 Sum_probs=95.7
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcc-----c---------------------ccce------------eecceeeEEe
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVG-----H---------------------YSFT------------TLRPNLGNMN 349 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~-----~---------------------~~ft------------Tl~p~~g~v~ 349 (494)
+|+++|..++|||||+++|+......+ . +.|+ |..+....+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 478999999999999999985321100 0 0000 0000012233
Q ss_pred ecCcceEEecCCCccCCccccccchhhHHHHHH--hhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCC
Q 011082 350 FDDIQITVADIPGLIKGAHENRGLGHAFLRHIE--RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP 427 (494)
Q Consensus 350 ~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~--~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P 427 (494)
..+..+.++||||+.. +.......+. .+|++++|+|+... ...+...++..+.. .+.|
T Consensus 81 ~~~~~i~liDtpG~~~-------~~~~~~~~~~~~~~D~~llVvda~~g--------~~~~d~~~l~~l~~-----~~ip 140 (224)
T cd04165 81 KSSKLVTFIDLAGHER-------YLKTTLFGLTGYAPDYAMLVVAANAG--------IIGMTKEHLGLALA-----LNIP 140 (224)
T ss_pred eCCcEEEEEECCCcHH-------HHHHHHHhhcccCCCEEEEEEECCCC--------CcHHHHHHHHHHHH-----cCCC
Confidence 4457799999999854 3333444443 68999999998763 22333444444432 2689
Q ss_pred EEEEEeCCCcCChHH---HHHHHHHHcC----------------------------CCCEEEEEcccCCCHHHHHHHHHH
Q 011082 428 SLVVANKIDEDGAEE---VYEELERRVQ----------------------------GVPIYPVCAVLEEGVPELKVGLRM 476 (494)
Q Consensus 428 ~IlVlNKiDl~~~~e---~~~~L~~~~~----------------------------~~~ii~ISA~~g~gI~~L~~~I~~ 476 (494)
.++|+||+|+.+.+. ..+.+++.+. ..++|++||.+|+|+++|...|..
T Consensus 141 ~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 141 VFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred EEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 999999999976542 3334443331 248999999999999999988864
Q ss_pred H
Q 011082 477 L 477 (494)
Q Consensus 477 ~ 477 (494)
+
T Consensus 221 l 221 (224)
T cd04165 221 L 221 (224)
T ss_pred c
Confidence 3
No 213
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.50 E-value=9.2e-14 Score=122.92 Aligned_cols=156 Identities=23% Similarity=0.284 Sum_probs=113.0
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhcee
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 387 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~l 387 (494)
.+.+||..|+|||||+|.+.... ...+...|.......+.-.+..+.+||.||.-. +...|-++.+.+++|
T Consensus 22 el~lvGLq~sGKtt~Vn~ia~g~--~~edmiptvGfnmrk~tkgnvtiklwD~gGq~r-------frsmWerycR~v~ai 92 (186)
T KOG0075|consen 22 ELSLVGLQNSGKTTLVNVIARGQ--YLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR-------FRSMWERYCRGVSAI 92 (186)
T ss_pred eEEEEeeccCCcceEEEEEeecc--chhhhcccccceeEEeccCceEEEEEecCCCcc-------HHHHHHHHhhcCcEE
Confidence 47899999999999999886531 223344556666667777778999999999865 444566778899999
Q ss_pred eEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHHc------CCCCEEEEEc
Q 011082 388 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRV------QGVPIYPVCA 461 (494)
Q Consensus 388 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~------~~~~ii~ISA 461 (494)
+||+|++++ +.+..-+.-+..| .+.+.+...|.+++.||.|++++-...+.+.++- ....++.|||
T Consensus 93 vY~VDaad~-------~k~~~sr~EL~~L-L~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siSc 164 (186)
T KOG0075|consen 93 VYVVDAADP-------DKLEASRSELHDL-LDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISC 164 (186)
T ss_pred EEEeecCCc-------ccchhhHHHHHHH-hcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEE
Confidence 999999984 2232222222222 2346788999999999999998754444444432 2456899999
Q ss_pred ccCCCHHHHHHHHHHHhcc
Q 011082 462 VLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l~~ 480 (494)
+...+++.+.++|.+....
T Consensus 165 ke~~Nid~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 165 KEKVNIDITLDWLIEHSKS 183 (186)
T ss_pred cCCccHHHHHHHHHHHhhh
Confidence 9999999999999887543
No 214
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.49 E-value=2.7e-13 Score=121.59 Aligned_cols=157 Identities=20% Similarity=0.159 Sum_probs=114.6
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCccccccee--ecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHH
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTT--LRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIE 382 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftT--l~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~ 382 (494)
.+|.|||..|+||||||-+++..... +...+| .+..+..+.+++ ..+.+|||.|..+...+ .-++++
T Consensus 12 ~KiLlIGeSGVGKSSLllrFv~~~fd--~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtL-------TpSyyR 82 (209)
T KOG0080|consen 12 FKILLIGESGVGKSSLLLRFVSNTFD--DLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTL-------TPSYYR 82 (209)
T ss_pred EEEEEEccCCccHHHHHHHHHhcccC--ccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhcc-------CHhHhc
Confidence 47899999999999999999875321 222233 333445566666 67899999999773332 236688
Q ss_pred hhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh-----HHHHHHHHHHcCCCCEE
Q 011082 383 RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA-----EEVYEELERRVQGVPIY 457 (494)
Q Consensus 383 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~-----~e~~~~L~~~~~~~~ii 457 (494)
.|..+|+|+|++. ++.+..+..|++|+..|... .+.-.++|.||+|..+. ++-++.. +.+ ..-++
T Consensus 83 gaqGiIlVYDVT~-------Rdtf~kLd~W~~Eld~Ystn-~diikmlVgNKiDkes~R~V~reEG~kfA-r~h-~~LFi 152 (209)
T KOG0080|consen 83 GAQGIILVYDVTS-------RDTFVKLDIWLKELDLYSTN-PDIIKMLVGNKIDKESERVVDREEGLKFA-RKH-RCLFI 152 (209)
T ss_pred cCceeEEEEEccc-------hhhHHhHHHHHHHHHhhcCC-ccHhHhhhcccccchhcccccHHHHHHHH-Hhh-CcEEE
Confidence 8999999999997 57888899999999998632 34556788899997642 2333322 222 45689
Q ss_pred EEEcccCCCHHHHHHHHHHHhcccC
Q 011082 458 PVCAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 458 ~ISA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
++||++.+|++..++.+.+.+-+.+
T Consensus 153 E~SAkt~~~V~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 153 ECSAKTRENVQCCFEELVEKIIETP 177 (209)
T ss_pred EcchhhhccHHHHHHHHHHHHhcCc
Confidence 9999999999999998887765543
No 215
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.48 E-value=7.9e-13 Score=145.58 Aligned_cols=158 Identities=21% Similarity=0.250 Sum_probs=107.2
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcCCCCc---------cc------ccceeecceeeEEeec-----CcceEEecCCCc
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRAKPAV---------GH------YSFTTLRPNLGNMNFD-----DIQITVADIPGL 363 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i---------~~------~~ftTl~p~~g~v~~~-----~~~~~l~DtPGl 363 (494)
+.+.+|+|+|..++|||||+.+|....-.+ .+ ....|+....-.+.+. +..+.++||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 345689999999999999999997532111 11 1233444433344442 367899999999
Q ss_pred cCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh--H
Q 011082 364 IKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--E 441 (494)
Q Consensus 364 i~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~--~ 441 (494)
.+ +...+.+.+..||.+|+|+|+++.. .......+.. +.. .+.|.|+|+||+|+... +
T Consensus 85 ~d-------F~~~v~~sl~~aD~aILVVDas~gv-------~~qt~~~~~~-~~~-----~~lpiIvViNKiDl~~a~~~ 144 (600)
T PRK05433 85 VD-------FSYEVSRSLAACEGALLVVDASQGV-------EAQTLANVYL-ALE-----NDLEIIPVLNKIDLPAADPE 144 (600)
T ss_pred HH-------HHHHHHHHHHHCCEEEEEEECCCCC-------CHHHHHHHHH-HHH-----CCCCEEEEEECCCCCcccHH
Confidence 76 3444567788999999999998732 1222222221 111 26799999999999753 3
Q ss_pred HHHHHHHHHcC--CCCEEEEEcccCCCHHHHHHHHHHHhccc
Q 011082 442 EVYEELERRVQ--GVPIYPVCAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 442 e~~~~L~~~~~--~~~ii~ISA~~g~gI~~L~~~I~~~l~~~ 481 (494)
...+.+.+.+. ...++++||+++.|+++|+++|...+...
T Consensus 145 ~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 145 RVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred HHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 34455655542 23489999999999999999999888654
No 216
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.48 E-value=4e-13 Score=141.99 Aligned_cols=156 Identities=22% Similarity=0.302 Sum_probs=100.8
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCC---CcccccceeecceeeEEee---------------------c-----CcceEE
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKP---AVGHYSFTTLRPNLGNMNF---------------------D-----DIQITV 357 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~---~i~~~~ftTl~p~~g~v~~---------------------~-----~~~~~l 357 (494)
-+|+++|..++|||||+.+|++... ........|++.......+ + ...+.+
T Consensus 10 ~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 89 (411)
T PRK04000 10 VNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVSF 89 (411)
T ss_pred EEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEEE
Confidence 4799999999999999999987411 1111122344332211111 0 257899
Q ss_pred ecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCc
Q 011082 358 ADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDE 437 (494)
Q Consensus 358 ~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl 437 (494)
+||||..+ +...++..+..+|++++|+|++++. +..+....+..+.. +...|.++|+||+|+
T Consensus 90 iDtPG~~~-------f~~~~~~~~~~~D~~llVVDa~~~~-------~~~~t~~~l~~l~~----~~i~~iiVVlNK~Dl 151 (411)
T PRK04000 90 VDAPGHET-------LMATMLSGAALMDGAILVIAANEPC-------PQPQTKEHLMALDI----IGIKNIVIVQNKIDL 151 (411)
T ss_pred EECCCHHH-------HHHHHHHHHhhCCEEEEEEECCCCC-------CChhHHHHHHHHHH----cCCCcEEEEEEeecc
Confidence 99999753 4455667777789999999998631 01111222222221 123578999999999
Q ss_pred CChHHH---HHHHHHHc-----CCCCEEEEEcccCCCHHHHHHHHHHHhcc
Q 011082 438 DGAEEV---YEELERRV-----QGVPIYPVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 438 ~~~~e~---~~~L~~~~-----~~~~ii~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
.+.++. .+.+...+ ...+++++||++++|+++|++.|...+..
T Consensus 152 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 152 VSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred ccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 764332 33444433 24689999999999999999999987754
No 217
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.47 E-value=5.2e-13 Score=133.46 Aligned_cols=135 Identities=20% Similarity=0.267 Sum_probs=95.6
Q ss_pred eeeeeCCCCCcHHHHHHHHHc---CCCC---c------------ccccceeecceeeEEeecCcceEEecCCCccCCccc
Q 011082 308 DVGLVGMPSAGKSTLLGAISR---AKPA---V------------GHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE 369 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~---~~~~---i------------~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~ 369 (494)
+|+++|.+|+|||||+++|.. .... + ......|++.....+.+.+..+.++||||+.+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d---- 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD---- 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH----
Confidence 489999999999999999953 2111 1 12335677777788888889999999999865
Q ss_pred cccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh--HHHHHHH
Q 011082 370 NRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYEEL 447 (494)
Q Consensus 370 ~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~--~e~~~~L 447 (494)
+.......+..+|++++|+|+.... ..+...++..+.. .++|.|+++||+|+... +...+.+
T Consensus 77 ---f~~~~~~~l~~aD~ailVVDa~~g~--------~~~t~~~~~~~~~-----~~~p~ivviNK~D~~~a~~~~~~~~l 140 (270)
T cd01886 77 ---FTIEVERSLRVLDGAVAVFDAVAGV--------EPQTETVWRQADR-----YNVPRIAFVNKMDRTGADFFRVVEQI 140 (270)
T ss_pred ---HHHHHHHHHHHcCEEEEEEECCCCC--------CHHHHHHHHHHHH-----cCCCEEEEEECCCCCCCCHHHHHHHH
Confidence 4445677889999999999988631 2233344444433 36899999999999743 4556777
Q ss_pred HHHcCC---CCEEEEEcc
Q 011082 448 ERRVQG---VPIYPVCAV 462 (494)
Q Consensus 448 ~~~~~~---~~ii~ISA~ 462 (494)
++.+.. ..++|||+.
T Consensus 141 ~~~l~~~~~~~~~Pisa~ 158 (270)
T cd01886 141 REKLGANPVPLQLPIGEE 158 (270)
T ss_pred HHHhCCCceEEEeccccC
Confidence 776622 235777775
No 218
>PRK00049 elongation factor Tu; Reviewed
Probab=99.47 E-value=5.3e-13 Score=140.46 Aligned_cols=153 Identities=22% Similarity=0.252 Sum_probs=102.9
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCC----------------cccccceeecceeeEEeecCcceEEecCCCccCCcccc
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPA----------------VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN 370 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~----------------i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~ 370 (494)
.+|+++|..++|||||+++|++.... .......|++.....+..++..+.++||||+.+
T Consensus 13 ~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~----- 87 (396)
T PRK00049 13 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD----- 87 (396)
T ss_pred EEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH-----
Confidence 47999999999999999999873110 011345666665444444567899999999843
Q ss_pred ccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEE-EEEeCCCcCChHHHH----H
Q 011082 371 RGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSL-VVANKIDEDGAEEVY----E 445 (494)
Q Consensus 371 ~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~I-lVlNKiDl~~~~e~~----~ 445 (494)
+.......+..+|++++|+|+... ...+...++..+.. ...|.+ +++||+|+.+.++.+ +
T Consensus 88 --f~~~~~~~~~~aD~~llVVDa~~g--------~~~qt~~~~~~~~~-----~g~p~iiVvvNK~D~~~~~~~~~~~~~ 152 (396)
T PRK00049 88 --YVKNMITGAAQMDGAILVVSAADG--------PMPQTREHILLARQ-----VGVPYIVVFLNKCDMVDDEELLELVEM 152 (396)
T ss_pred --HHHHHHhhhccCCEEEEEEECCCC--------CchHHHHHHHHHHH-----cCCCEEEEEEeecCCcchHHHHHHHHH
Confidence 444455667789999999998763 22333334333332 257876 578999998643322 2
Q ss_pred HHHHHc-------CCCCEEEEEcccCC----------CHHHHHHHHHHHhc
Q 011082 446 ELERRV-------QGVPIYPVCAVLEE----------GVPELKVGLRMLVN 479 (494)
Q Consensus 446 ~L~~~~-------~~~~ii~ISA~~g~----------gI~~L~~~I~~~l~ 479 (494)
++.+.+ ...+++++||+++. ++..|++.|...+.
T Consensus 153 ~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 153 EVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred HHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 333333 23689999999875 57889999988765
No 219
>PLN03127 Elongation factor Tu; Provisional
Probab=99.47 E-value=9.8e-13 Score=140.18 Aligned_cols=155 Identities=23% Similarity=0.263 Sum_probs=102.5
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCC------C----------cccccceeecceeeEEeecCcceEEecCCCccCCccc
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKP------A----------VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE 369 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~------~----------i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~ 369 (494)
...|+++|..++|||||+++|++... . .......|++...-.+..++.++.++||||+.+
T Consensus 61 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~---- 136 (447)
T PLN03127 61 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD---- 136 (447)
T ss_pred eEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc----
Confidence 34699999999999999999974310 0 111255677765555555667899999999853
Q ss_pred cccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCE-EEEEeCCCcCChHHHHH---
Q 011082 370 NRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPS-LVVANKIDEDGAEEVYE--- 445 (494)
Q Consensus 370 ~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~-IlVlNKiDl~~~~e~~~--- 445 (494)
+.......+..+|++++|+|+... ...+...++..+.. .+.|. |+|+||+|+.+.++..+
T Consensus 137 ---f~~~~~~g~~~aD~allVVda~~g--------~~~qt~e~l~~~~~-----~gip~iIvviNKiDlv~~~~~~~~i~ 200 (447)
T PLN03127 137 ---YVKNMITGAAQMDGGILVVSAPDG--------PMPQTKEHILLARQ-----VGVPSLVVFLNKVDVVDDEELLELVE 200 (447)
T ss_pred ---hHHHHHHHHhhCCEEEEEEECCCC--------CchhHHHHHHHHHH-----cCCCeEEEEEEeeccCCHHHHHHHHH
Confidence 444455566779999999998763 12333334343332 25785 67899999986443333
Q ss_pred -HHHHHc-------CCCCEEEEEcc---cCCC-------HHHHHHHHHHHhcc
Q 011082 446 -ELERRV-------QGVPIYPVCAV---LEEG-------VPELKVGLRMLVNG 480 (494)
Q Consensus 446 -~L~~~~-------~~~~ii~ISA~---~g~g-------I~~L~~~I~~~l~~ 480 (494)
++.+.+ ...+++++||. ++.| +.+|++.|..++..
T Consensus 201 ~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~ 253 (447)
T PLN03127 201 MELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPE 253 (447)
T ss_pred HHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCC
Confidence 232322 13578888876 4544 78899999888753
No 220
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=3.2e-13 Score=124.14 Aligned_cols=155 Identities=17% Similarity=0.158 Sum_probs=115.0
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecce--eeEEeecC--cceEEecCCCccCCccccccchhhHHHHHH
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPN--LGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIE 382 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~--~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~ 382 (494)
.++.++|.+|+|||.||..++... .+..+. .|+... ...+.+++ ..+.+|||.|.... ..-..++++
T Consensus 7 fKyIiiGd~gVGKSclllrf~~kr-F~~~hd-~TiGvefg~r~~~id~k~IKlqiwDtaGqe~f-------rsv~~syYr 77 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKR-FQPVHD-LTIGVEFGARMVTIDGKQIKLQIWDTAGQESF-------RSVTRSYYR 77 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccC-cccccc-ceeeeeeceeEEEEcCceEEEEEEecCCcHHH-------HHHHHHHhc
Confidence 478999999999999999999753 233332 444443 34566666 56799999998652 222345678
Q ss_pred hhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEE
Q 011082 383 RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYP 458 (494)
Q Consensus 383 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~ 458 (494)
.+...|+|+|+.. .+++..+..|+.++..+. ..+..++++.||+||.... +.-+++.+. .+..+..
T Consensus 78 ~a~GalLVydit~-------r~sF~hL~~wL~D~rq~~--~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~e-hgLifmE 147 (216)
T KOG0098|consen 78 GAAGALLVYDITR-------RESFNHLTSWLEDARQHS--NENMVIMLIGNKSDLEARREVSKEEGEAFARE-HGLIFME 147 (216)
T ss_pred cCcceEEEEEccc-------hhhHHHHHHHHHHHHHhc--CCCcEEEEEcchhhhhccccccHHHHHHHHHH-cCceeeh
Confidence 8899999999997 588999999999988774 2366677778999998653 233455555 4778899
Q ss_pred EEcccCCCHHHHHHHHHHHhcc
Q 011082 459 VCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 459 ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
+||++++|+++.+..+...+..
T Consensus 148 TSakt~~~VEEaF~nta~~Iy~ 169 (216)
T KOG0098|consen 148 TSAKTAENVEEAFINTAKEIYR 169 (216)
T ss_pred hhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999998877665544
No 221
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.46 E-value=2.3e-13 Score=120.51 Aligned_cols=158 Identities=16% Similarity=0.249 Sum_probs=119.4
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCCccccccee-ecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHH
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTT-LRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHI 381 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftT-l~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i 381 (494)
..+...|+|.+|+|||+|+-++... ....+|..|+ .+..+.++.+++ ..+.||||.|... +....-.++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~dd-tFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqEr-------Frtitstyy 78 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADD-TFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQER-------FRTITSTYY 78 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhc-ccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHH-------HHHHHHHHc
Confidence 3456789999999999999999875 4455564433 566678888887 6789999999865 222233456
Q ss_pred HhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHH----HHHHHHHcCCCCEE
Q 011082 382 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV----YEELERRVQGVPIY 457 (494)
Q Consensus 382 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~----~~~L~~~~~~~~ii 457 (494)
+..+.++.|+|++. .+++...+.|+.++..-.+ ..|.|+|.||.|.++.... ...+... .+..+|
T Consensus 79 rgthgv~vVYDVTn-------~ESF~Nv~rWLeei~~ncd---sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~-mgie~F 147 (198)
T KOG0079|consen 79 RGTHGVIVVYDVTN-------GESFNNVKRWLEEIRNNCD---SVPKVLVGNKNDDPERRVVDTEDARAFALQ-MGIELF 147 (198)
T ss_pred cCCceEEEEEECcc-------hhhhHhHHHHHHHHHhcCc---cccceecccCCCCccceeeehHHHHHHHHh-cCchhe
Confidence 77899999999998 4788889999988876443 7899999999999875321 1122222 478899
Q ss_pred EEEcccCCCHHHHHHHHHHHhccc
Q 011082 458 PVCAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 458 ~ISA~~g~gI~~L~~~I~~~l~~~ 481 (494)
++||+..++++..+..|.+++...
T Consensus 148 ETSaKe~~NvE~mF~cit~qvl~~ 171 (198)
T KOG0079|consen 148 ETSAKENENVEAMFHCITKQVLQA 171 (198)
T ss_pred ehhhhhcccchHHHHHHHHHHHHH
Confidence 999999999999999998776543
No 222
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.45 E-value=5.6e-13 Score=141.65 Aligned_cols=148 Identities=22% Similarity=0.255 Sum_probs=95.8
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCc-------------------------------ccccceeecceeeEEeecCcc
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAV-------------------------------GHYSFTTLRPNLGNMNFDDIQ 354 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i-------------------------------~~~~ftTl~p~~g~v~~~~~~ 354 (494)
..+|+++|..++|||||+++|+...-.+ ......|++.....+..++..
T Consensus 7 ~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~~ 86 (426)
T TIGR00483 7 HINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKYE 86 (426)
T ss_pred eeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCeE
Confidence 3479999999999999999997421110 012356777777777777889
Q ss_pred eEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeC
Q 011082 355 ITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANK 434 (494)
Q Consensus 355 ~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNK 434 (494)
+.++||||+.+ +...+...+..+|++++|+|+++... ....+.......+. .+...|.|+|+||
T Consensus 87 i~iiDtpGh~~-------f~~~~~~~~~~aD~~ilVvDa~~~~~-----~~~~~t~~~~~~~~----~~~~~~iIVviNK 150 (426)
T TIGR00483 87 VTIVDCPGHRD-------FIKNMITGASQADAAVLVVAVGDGEF-----EVQPQTREHAFLAR----TLGINQLIVAINK 150 (426)
T ss_pred EEEEECCCHHH-------HHHHHHhhhhhCCEEEEEEECCCCCc-----ccCCchHHHHHHHH----HcCCCeEEEEEEC
Confidence 99999999743 33445556788999999999987411 00011111111111 1223578889999
Q ss_pred CCcCCh-HH----HHHHHHHHc-------CCCCEEEEEcccCCCHHH
Q 011082 435 IDEDGA-EE----VYEELERRV-------QGVPIYPVCAVLEEGVPE 469 (494)
Q Consensus 435 iDl~~~-~e----~~~~L~~~~-------~~~~ii~ISA~~g~gI~~ 469 (494)
+|+.+. ++ ..+++.+.+ ...++++|||+++.|+++
T Consensus 151 ~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 151 MDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred hhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 999742 11 223333322 136799999999999985
No 223
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.45 E-value=1.1e-12 Score=138.13 Aligned_cols=152 Identities=22% Similarity=0.264 Sum_probs=97.5
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCC-----C-C----c------ccccceeecceeeEEeecCcceEEecCCCccCCcccc
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAK-----P-A----V------GHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN 370 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~-----~-~----i------~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~ 370 (494)
.+|+++|..++|||||+++|++.. . . . ......|++...-.+..++..+.++||||+.+
T Consensus 13 ~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~----- 87 (394)
T TIGR00485 13 VNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD----- 87 (394)
T ss_pred EEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH-----
Confidence 479999999999999999998430 0 0 0 11245666654444444457899999999854
Q ss_pred ccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEE-EEEeCCCcCChHHHHH----
Q 011082 371 RGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSL-VVANKIDEDGAEEVYE---- 445 (494)
Q Consensus 371 ~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~I-lVlNKiDl~~~~e~~~---- 445 (494)
+...++..+..+|++++|+|+... +..+....+..+.. ...|.+ +|+||+|+.+.++..+
T Consensus 88 --f~~~~~~~~~~~D~~ilVvda~~g--------~~~qt~e~l~~~~~-----~gi~~iIvvvNK~Dl~~~~~~~~~~~~ 152 (394)
T TIGR00485 88 --YVKNMITGAAQMDGAILVVSATDG--------PMPQTREHILLARQ-----VGVPYIVVFLNKCDMVDDEELLELVEM 152 (394)
T ss_pred --HHHHHHHHHhhCCEEEEEEECCCC--------CcHHHHHHHHHHHH-----cCCCEEEEEEEecccCCHHHHHHHHHH
Confidence 444556667788999999998862 22333333333322 256765 6799999986543222
Q ss_pred HHHHHc-----C--CCCEEEEEcccCC--------CHHHHHHHHHHHh
Q 011082 446 ELERRV-----Q--GVPIYPVCAVLEE--------GVPELKVGLRMLV 478 (494)
Q Consensus 446 ~L~~~~-----~--~~~ii~ISA~~g~--------gI~~L~~~I~~~l 478 (494)
++++.+ . ..+++++||+++. ++.+|++.|..++
T Consensus 153 ~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~ 200 (394)
T TIGR00485 153 EVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYI 200 (394)
T ss_pred HHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcC
Confidence 333332 1 2689999999874 3456666665554
No 224
>PLN03126 Elongation factor Tu; Provisional
Probab=99.44 E-value=1.9e-12 Score=138.75 Aligned_cols=154 Identities=22% Similarity=0.278 Sum_probs=102.2
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCC----------------cccccceeecceeeEEeecCcceEEecCCCccCCcc
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPA----------------VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAH 368 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~----------------i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~ 368 (494)
...+|+++|.+++|||||+++|+..... .......|++.....+..++..+.++||||+.+
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~--- 156 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD--- 156 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH---
Confidence 3457999999999999999999853111 111234555555555566678899999999864
Q ss_pred ccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCC-EEEEEeCCCcCChHHHHH--
Q 011082 369 ENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP-SLVVANKIDEDGAEEVYE-- 445 (494)
Q Consensus 369 ~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P-~IlVlNKiDl~~~~e~~~-- 445 (494)
+.......+..+|+.++|+|+... ...+..+++..+.. ...| .|+++||+|+.+.++..+
T Consensus 157 ----f~~~~~~g~~~aD~ailVVda~~G--------~~~qt~e~~~~~~~-----~gi~~iIvvvNK~Dl~~~~~~~~~i 219 (478)
T PLN03126 157 ----YVKNMITGAAQMDGAILVVSGADG--------PMPQTKEHILLAKQ-----VGVPNMVVFLNKQDQVDDEELLELV 219 (478)
T ss_pred ----HHHHHHHHHhhCCEEEEEEECCCC--------CcHHHHHHHHHHHH-----cCCCeEEEEEecccccCHHHHHHHH
Confidence 444556777889999999998863 22333444443332 2567 667899999987543332
Q ss_pred --HHHHHc-------CCCCEEEEEcccCCC------------------HHHHHHHHHHHh
Q 011082 446 --ELERRV-------QGVPIYPVCAVLEEG------------------VPELKVGLRMLV 478 (494)
Q Consensus 446 --~L~~~~-------~~~~ii~ISA~~g~g------------------I~~L~~~I~~~l 478 (494)
++.+.+ ...+++++||.++.+ +..|++.|.+++
T Consensus 220 ~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~ 279 (478)
T PLN03126 220 ELEVRELLSSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYI 279 (478)
T ss_pred HHHHHHHHHhcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhC
Confidence 333332 246899999988742 456777777653
No 225
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.44 E-value=1.4e-12 Score=124.18 Aligned_cols=157 Identities=18% Similarity=0.246 Sum_probs=96.4
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCc-cccc----ceeecceeeEEeec-CcceEEecCCCccCCccccccchhhHHHH-
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAV-GHYS----FTTLRPNLGNMNFD-DIQITVADIPGLIKGAHENRGLGHAFLRH- 380 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i-~~~~----ftTl~p~~g~v~~~-~~~~~l~DtPGli~~a~~~~~L~~~fl~~- 380 (494)
+|+|+|.+|||||||+|+|++..... ...+ -+|.. ...+..+ ...+.++||||+.+.... ...+++.
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~l~l~DtpG~~~~~~~----~~~~l~~~ 76 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMK--RTPYPHPKFPNVTLWDLPGIGSTAFP----PDDYLEEM 76 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccC--ceeeecCCCCCceEEeCCCCCcccCC----HHHHHHHh
Confidence 58999999999999999999853211 1110 11111 1122212 247899999998653211 1223332
Q ss_pred -HHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh------------HHHHHHH
Q 011082 381 -IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA------------EEVYEEL 447 (494)
Q Consensus 381 -i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~------------~e~~~~L 447 (494)
+..+|++++|.|.. .......+...+..+ .+|+++|+||+|+... ++.++.+
T Consensus 77 ~~~~~d~~l~v~~~~----------~~~~d~~~~~~l~~~-----~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i 141 (197)
T cd04104 77 KFSEYDFFIIISSTR----------FSSNDVKLAKAIQCM-----GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEI 141 (197)
T ss_pred CccCcCEEEEEeCCC----------CCHHHHHHHHHHHHh-----CCCEEEEEecccchhhhhhccccccccHHHHHHHH
Confidence 34678888875421 112223334444432 5899999999998532 2233333
Q ss_pred HHHc---------CCCCEEEEEcc--cCCCHHHHHHHHHHHhcccCCcc
Q 011082 448 ERRV---------QGVPIYPVCAV--LEEGVPELKVGLRMLVNGEKSER 485 (494)
Q Consensus 448 ~~~~---------~~~~ii~ISA~--~g~gI~~L~~~I~~~l~~~~~~~ 485 (494)
++.+ ...+++.+|+. .+.++..|.+.|...|.+.++..
T Consensus 142 ~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~~ 190 (197)
T cd04104 142 RDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRHV 190 (197)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHHH
Confidence 3322 23579999998 57899999999999998776654
No 226
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=4.6e-13 Score=123.39 Aligned_cols=153 Identities=27% Similarity=0.330 Sum_probs=110.6
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhcee
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 387 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~l 387 (494)
+|.++|..||||||+|..|--.+.... ..|+...+-.+.+.+.+|.+||.-|... +...|..++..++.+
T Consensus 19 ~IlmlGLD~AGKTTILykLk~~E~vtt---vPTiGfnVE~v~ykn~~f~vWDvGGq~k-------~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 19 RILMVGLDAAGKTTILYKLKLGEIVTT---VPTIGFNVETVEYKNISFTVWDVGGQEK-------LRPLWKHYFQNTQGL 88 (181)
T ss_pred EEEEEeccCCCceeeeEeeccCCcccC---CCccccceeEEEEcceEEEEEecCCCcc-------cccchhhhccCCcEE
Confidence 789999999999999998865432211 2344555667889999999999999865 445577788999999
Q ss_pred eEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhh--cccCCCCEEEEEeCCCcCChH---HHHHHHHHH--c-CCCCEEEE
Q 011082 388 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQ--EGLSDRPSLVVANKIDEDGAE---EVYEELERR--V-QGVPIYPV 459 (494)
Q Consensus 388 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~--~~l~~~P~IlVlNKiDl~~~~---e~~~~L~~~--~-~~~~ii~I 459 (494)
|||+|.++. +.+.+...+|.... +.+...|.++.+||.|++.+- ++.+.|.-. . ..+.+-.+
T Consensus 89 IfVvDS~Dr----------~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~ 158 (181)
T KOG0070|consen 89 IFVVDSSDR----------ERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQST 158 (181)
T ss_pred EEEEeCCcH----------HHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeec
Confidence 999999882 33333334443332 335688999999999998653 333322211 1 34568889
Q ss_pred EcccCCCHHHHHHHHHHHhcc
Q 011082 460 CAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~ 480 (494)
+|.+|+|+.+-+++|...+..
T Consensus 159 ~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 159 CAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred cccccccHHHHHHHHHHHHhc
Confidence 999999999999999988764
No 227
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.43 E-value=2.7e-12 Score=122.97 Aligned_cols=118 Identities=25% Similarity=0.390 Sum_probs=77.7
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeec----CcceEEecCCCccCCccccccchhhHHHHHH
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD----DIQITVADIPGLIKGAHENRGLGHAFLRHIE 382 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~----~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~ 382 (494)
+.|.|+|++|||||||++.|+..... ..+ ++..+....+.+. +..+.++||||..+ +...+..++.
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~-~t~--~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~-------~~~~~~~~~~ 70 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYR-STV--TSIEPNVATFILNSEGKGKKFRLVDVPGHPK-------LRDKLLETLK 70 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCC-Ccc--CcEeecceEEEeecCCCCceEEEEECCCCHH-------HHHHHHHHHh
Confidence 46899999999999999999976432 222 2233445544443 47799999999865 4455667788
Q ss_pred hh-ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhc-ccCCCCEEEEEeCCCcCCh
Q 011082 383 RT-KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQE-GLSDRPSLVVANKIDEDGA 440 (494)
Q Consensus 383 ~a-d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~-~l~~~P~IlVlNKiDl~~~ 440 (494)
.+ +++|+|+|+++.. ........++..+..... .-...|+++|+||+|+..+
T Consensus 71 ~~~~~vV~VvD~~~~~------~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 71 NSAKGIVFVVDSATFQ------KNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred ccCCEEEEEEECccch------hHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 88 9999999998721 122232223222211111 1136899999999998653
No 228
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.41 E-value=1.4e-12 Score=145.19 Aligned_cols=143 Identities=20% Similarity=0.221 Sum_probs=93.1
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCccc---------------------------------ccceeecceeeEEeecCcc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGH---------------------------------YSFTTLRPNLGNMNFDDIQ 354 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~---------------------------------~~ftTl~p~~g~v~~~~~~ 354 (494)
+|+++|.+|||||||+++|+...-.+.. ....|++.....+..++..
T Consensus 26 ~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~~ 105 (632)
T PRK05506 26 RFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPKRK 105 (632)
T ss_pred EEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCCce
Confidence 5999999999999999999864221110 0124555556666777788
Q ss_pred eEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeC
Q 011082 355 ITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANK 434 (494)
Q Consensus 355 ~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNK 434 (494)
+.++||||+.+ +...+...+..+|++++|+|+..... .+.......+.. +..+|.|+|+||
T Consensus 106 ~~liDtPG~~~-------f~~~~~~~~~~aD~~llVvda~~g~~--------~~t~e~~~~~~~----~~~~~iivvvNK 166 (632)
T PRK05506 106 FIVADTPGHEQ-------YTRNMVTGASTADLAIILVDARKGVL--------TQTRRHSFIASL----LGIRHVVLAVNK 166 (632)
T ss_pred EEEEECCChHH-------HHHHHHHHHHhCCEEEEEEECCCCcc--------ccCHHHHHHHHH----hCCCeEEEEEEe
Confidence 99999999743 33445566889999999999876321 111112121221 123678889999
Q ss_pred CCcCC-hHH----HHHHHHH---Hc--CCCCEEEEEcccCCCHHH
Q 011082 435 IDEDG-AEE----VYEELER---RV--QGVPIYPVCAVLEEGVPE 469 (494)
Q Consensus 435 iDl~~-~~e----~~~~L~~---~~--~~~~ii~ISA~~g~gI~~ 469 (494)
+|+.+ .++ ...++.+ .+ ...++++|||++|.|+++
T Consensus 167 ~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 167 MDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred cccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 99974 222 2223322 11 335799999999999974
No 229
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.41 E-value=2.8e-12 Score=140.83 Aligned_cols=153 Identities=27% Similarity=0.287 Sum_probs=91.8
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCccccccee------eccee------eE------EeecCcceEEecCCCccCCc
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTT------LRPNL------GN------MNFDDIQITVADIPGLIKGA 367 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftT------l~p~~------g~------v~~~~~~~~l~DtPGli~~a 367 (494)
.+.|+++|.+|+|||||+++|++...........| ..+.. +. +.+.-..+.++||||+..
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~-- 83 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA-- 83 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH--
Confidence 45899999999999999999987643211111111 11110 00 000001378999999865
Q ss_pred cccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh-------
Q 011082 368 HENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA------- 440 (494)
Q Consensus 368 ~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~------- 440 (494)
+.....+.+..+|++++|+|+++... .+....+..+.. .+.|.++++||+|+...
T Consensus 84 -----f~~~~~~~~~~aD~~IlVvDa~~g~~--------~qt~e~i~~~~~-----~~vpiIvviNK~D~~~~~~~~~~~ 145 (586)
T PRK04004 84 -----FTNLRKRGGALADIAILVVDINEGFQ--------PQTIEAINILKR-----RKTPFVVAANKIDRIPGWKSTEDA 145 (586)
T ss_pred -----HHHHHHHhHhhCCEEEEEEECCCCCC--------HhHHHHHHHHHH-----cCCCEEEEEECcCCchhhhhhcCc
Confidence 22223345678999999999986321 111122222221 36899999999998521
Q ss_pred ----------HH-----------HHHHHHH-------------HcCCCCEEEEEcccCCCHHHHHHHHHHHh
Q 011082 441 ----------EE-----------VYEELER-------------RVQGVPIYPVCAVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 441 ----------~e-----------~~~~L~~-------------~~~~~~ii~ISA~~g~gI~~L~~~I~~~l 478 (494)
.. ....|.+ .....++++|||++++|+++|++.+...+
T Consensus 146 ~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 146 PFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 00 0011111 01236799999999999999999886543
No 230
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.40 E-value=2.4e-12 Score=135.90 Aligned_cols=143 Identities=21% Similarity=0.218 Sum_probs=93.0
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcc-------------------c--------------ccceeecceeeEEeecCcc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVG-------------------H--------------YSFTTLRPNLGNMNFDDIQ 354 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~-------------------~--------------~~ftTl~p~~g~v~~~~~~ 354 (494)
+|+++|..++|||||+.+|....-.+. + ....|++.....+..++..
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 589999999999999999964311110 0 1124566666666677789
Q ss_pred eEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeC
Q 011082 355 ITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANK 434 (494)
Q Consensus 355 ~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNK 434 (494)
+.++||||+.. +.......+..+|++++|+|+..... .+....+..+.. +..++.|+|+||
T Consensus 82 ~~liDtPGh~~-------f~~~~~~~~~~aD~allVVda~~G~~--------~qt~~~~~~~~~----~~~~~iivviNK 142 (406)
T TIGR02034 82 FIVADTPGHEQ-------YTRNMATGASTADLAVLLVDARKGVL--------EQTRRHSYIASL----LGIRHVVLAVNK 142 (406)
T ss_pred EEEEeCCCHHH-------HHHHHHHHHhhCCEEEEEEECCCCCc--------cccHHHHHHHHH----cCCCcEEEEEEe
Confidence 99999999754 44455667889999999999886422 122222222221 123467889999
Q ss_pred CCcCChH-HH----HHHHHHH---c--CCCCEEEEEcccCCCHHH
Q 011082 435 IDEDGAE-EV----YEELERR---V--QGVPIYPVCAVLEEGVPE 469 (494)
Q Consensus 435 iDl~~~~-e~----~~~L~~~---~--~~~~ii~ISA~~g~gI~~ 469 (494)
+|+...+ +. .+.+... + ...++++|||++|+|+++
T Consensus 143 ~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 143 MDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred cccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 9997532 22 2222221 1 235799999999999986
No 231
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.39 E-value=9.4e-13 Score=114.09 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=73.7
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCC----cccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPA----VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~----i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
+|.++|.+|||||||+++|.+.... .......+.......+..+...+.++|++|...... .....+..
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~-------~~~~~~~~ 73 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYS-------QHQFFLKK 73 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHC-------TSHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecc-------cccchhhc
Confidence 5899999999999999999987543 111222222222223333334588999999855211 11123889
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCC
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKID 436 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiD 436 (494)
+|++++|+|+++ ..++..+..+...+..+.....+.|+|+|+||.|
T Consensus 74 ~d~~ilv~D~s~-------~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 74 ADAVILVYDLSD-------PESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp SCEEEEEEECCG-------HHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred CcEEEEEEcCCC-------hHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 999999999997 3456666556555555543334689999999998
No 232
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.38 E-value=7e-12 Score=125.09 Aligned_cols=139 Identities=20% Similarity=0.327 Sum_probs=92.7
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCC---Cc---------ccc------cceeecceeeEEeecCcceEEecCCCccCCccc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKP---AV---------GHY------SFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE 369 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~---~i---------~~~------~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~ 369 (494)
+|+|+|.+|||||||+++|..... .. .++ ...|+.+....+.+++..+.++||||..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~---- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYAD---- 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHH----
Confidence 489999999999999999964311 11 111 23455566677778888999999999864
Q ss_pred cccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh--HHHHHHH
Q 011082 370 NRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYEEL 447 (494)
Q Consensus 370 ~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~--~e~~~~L 447 (494)
+.......+..+|.+++|+|++... ......++..+.. .+.|.++|+||+|+... ++..+.+
T Consensus 77 ---f~~~~~~~l~~aD~~i~Vvd~~~g~--------~~~~~~~~~~~~~-----~~~p~iivvNK~D~~~~~~~~~~~~l 140 (268)
T cd04170 77 ---FVGETRAALRAADAALVVVSAQSGV--------EVGTEKLWEFADE-----AGIPRIIFINKMDRERADFDKTLAAL 140 (268)
T ss_pred ---HHHHHHHHHHHCCEEEEEEeCCCCC--------CHHHHHHHHHHHH-----cCCCEEEEEECCccCCCCHHHHHHHH
Confidence 3344567788999999999998731 1222333333332 26899999999998864 3556777
Q ss_pred HHHcCCCCEEEEE--cccCCCH
Q 011082 448 ERRVQGVPIYPVC--AVLEEGV 467 (494)
Q Consensus 448 ~~~~~~~~ii~IS--A~~g~gI 467 (494)
++.+ +.++++++ ..++.++
T Consensus 141 ~~~~-~~~~~~~~ip~~~~~~~ 161 (268)
T cd04170 141 QEAF-GRPVVPLQLPIGEGDDF 161 (268)
T ss_pred HHHh-CCCeEEEEecccCCCce
Confidence 7766 33444444 3344443
No 233
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.38 E-value=4.2e-12 Score=135.40 Aligned_cols=157 Identities=19% Similarity=0.256 Sum_probs=101.2
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCc----------ccccceeecce-----eeEE---eec-----------------
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAV----------GHYSFTTLRPN-----LGNM---NFD----------------- 351 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i----------~~~~ftTl~p~-----~g~v---~~~----------------- 351 (494)
-.||++|.-.+|||||+.+||+..... .+.-|+..... .+.. .++
T Consensus 35 ~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (460)
T PTZ00327 35 INIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMT 114 (460)
T ss_pred EEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccccc
Confidence 479999999999999999999863311 11122221100 0000 000
Q ss_pred -CcceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEE
Q 011082 352 -DIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLV 430 (494)
Q Consensus 352 -~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~Il 430 (494)
...+.++||||+.. +...++..+..+|.+++|+|+.... +..+..+.+..+. .+.-+|.|+
T Consensus 115 ~~~~i~~IDtPGH~~-------fi~~m~~g~~~~D~alLVVda~~g~-------~~~qT~ehl~i~~----~lgi~~iIV 176 (460)
T PTZ00327 115 LKRHVSFVDCPGHDI-------LMATMLNGAAVMDAALLLIAANESC-------PQPQTSEHLAAVE----IMKLKHIII 176 (460)
T ss_pred ccceEeeeeCCCHHH-------HHHHHHHHHhhCCEEEEEEECCCCc-------cchhhHHHHHHHH----HcCCCcEEE
Confidence 13689999999743 5556667788899999999998621 1122222222221 122357889
Q ss_pred EEeCCCcCChH---HHHHHHHHHc-----CCCCEEEEEcccCCCHHHHHHHHHHHhccc
Q 011082 431 VANKIDEDGAE---EVYEELERRV-----QGVPIYPVCAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 431 VlNKiDl~~~~---e~~~~L~~~~-----~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~ 481 (494)
|+||+|+.+.+ +.++++++.+ ...++|+|||++|+|++.|++.|...+...
T Consensus 177 vlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 177 LQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP 235 (460)
T ss_pred EEecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence 99999998643 2334444433 357899999999999999999999876644
No 234
>PRK12739 elongation factor G; Reviewed
Probab=99.38 E-value=5.9e-12 Score=141.38 Aligned_cols=115 Identities=20% Similarity=0.239 Sum_probs=85.2
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcC---CCCc---c------------cccceeecceeeEEeecCcceEEecCCCccCC
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRA---KPAV---G------------HYSFTTLRPNLGNMNFDDIQITVADIPGLIKG 366 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~---~~~i---~------------~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~ 366 (494)
.+.+|+|||.+|+|||||+++|... ...+ . ....+|++.....+.+++..+.++||||+.+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~- 85 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD- 85 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH-
Confidence 4568999999999999999999642 1111 1 1345778777788888899999999999864
Q ss_pred ccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCC
Q 011082 367 AHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDG 439 (494)
Q Consensus 367 a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~ 439 (494)
+.......+..+|++|+|+|+.... ..+...++..+.. .+.|.|+++||+|+..
T Consensus 86 ------f~~e~~~al~~~D~~ilVvDa~~g~--------~~qt~~i~~~~~~-----~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 86 ------FTIEVERSLRVLDGAVAVFDAVSGV--------EPQSETVWRQADK-----YGVPRIVFVNKMDRIG 139 (691)
T ss_pred ------HHHHHHHHHHHhCeEEEEEeCCCCC--------CHHHHHHHHHHHH-----cCCCEEEEEECCCCCC
Confidence 3345677889999999999988631 2233344444433 2689999999999874
No 235
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.38 E-value=3.1e-12 Score=124.91 Aligned_cols=168 Identities=23% Similarity=0.250 Sum_probs=116.5
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCCc-ccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPAV-GHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i-~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
..-+|.|+|.+|||||||+|+|....... +..+.+|-.++.-...+++..+++|||||+.++......+...++..+.+
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~ 117 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPK 117 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHhhh
Confidence 33467799999999999999999654433 33333433333334556668899999999998766665677778888999
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh-------------------HHHH
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA-------------------EEVY 444 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~-------------------~e~~ 444 (494)
.|+++.++|+.+..- ......++.+... ...++.|+++|.+|.... ++..
T Consensus 118 ~DLvL~l~~~~draL----~~d~~f~~dVi~~-------~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~ 186 (296)
T COG3596 118 LDLVLWLIKADDRAL----GTDEDFLRDVIIL-------GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKA 186 (296)
T ss_pred ccEEEEeccCCCccc----cCCHHHHHHHHHh-------ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHH
Confidence 999999999887321 1222223322221 135899999999997533 0112
Q ss_pred HHHHHHc-CCCCEEEEEcccCCCHHHHHHHHHHHhcccCC
Q 011082 445 EELERRV-QGVPIYPVCAVLEEGVPELKVGLRMLVNGEKS 483 (494)
Q Consensus 445 ~~L~~~~-~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~~ 483 (494)
+.+.+.+ +-.+++.+|.....|++.|...+...+....+
T Consensus 187 ~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~r 226 (296)
T COG3596 187 EALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPVEAR 226 (296)
T ss_pred HHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCccccc
Confidence 2333333 45688999999999999999999998875544
No 236
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.38 E-value=5.2e-12 Score=135.71 Aligned_cols=147 Identities=18% Similarity=0.192 Sum_probs=94.0
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCccc---------------------------------ccceeecceeeEEeecC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGH---------------------------------YSFTTLRPNLGNMNFDD 352 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~---------------------------------~~ftTl~p~~g~v~~~~ 352 (494)
..+|+++|.++||||||+.+|....-.+.. ....|++.....+..++
T Consensus 27 ~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~ 106 (474)
T PRK05124 27 LLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEK 106 (474)
T ss_pred ceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccCC
Confidence 347999999999999999999644211110 01234555555566667
Q ss_pred cceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE
Q 011082 353 IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 432 (494)
Q Consensus 353 ~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl 432 (494)
..+.++||||+.. +.......+..+|++|+|+|+..... .+.......+.. +..+|.|+|+
T Consensus 107 ~~i~~iDTPGh~~-------f~~~~~~~l~~aD~allVVDa~~G~~--------~qt~~~~~l~~~----lg~~~iIvvv 167 (474)
T PRK05124 107 RKFIIADTPGHEQ-------YTRNMATGASTCDLAILLIDARKGVL--------DQTRRHSFIATL----LGIKHLVVAV 167 (474)
T ss_pred cEEEEEECCCcHH-------HHHHHHHHHhhCCEEEEEEECCCCcc--------ccchHHHHHHHH----hCCCceEEEE
Confidence 8999999999643 44455566788999999999876321 111111111111 1235788899
Q ss_pred eCCCcCCh-HH----HHHHHHHHc------CCCCEEEEEcccCCCHHHHH
Q 011082 433 NKIDEDGA-EE----VYEELERRV------QGVPIYPVCAVLEEGVPELK 471 (494)
Q Consensus 433 NKiDl~~~-~e----~~~~L~~~~------~~~~ii~ISA~~g~gI~~L~ 471 (494)
||+|+... .+ ..+.+...+ ...++|+|||++|+|++++.
T Consensus 168 NKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 168 NKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred EeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 99999742 22 222332211 24679999999999997643
No 237
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.37 E-value=1e-11 Score=119.57 Aligned_cols=111 Identities=20% Similarity=0.290 Sum_probs=72.0
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcc----------cc---------cceeecceeeEEeec-----CcceEEecCCCc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVG----------HY---------SFTTLRPNLGNMNFD-----DIQITVADIPGL 363 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~----------~~---------~ftTl~p~~g~v~~~-----~~~~~l~DtPGl 363 (494)
+|+++|..++|||||+++|+.....+. .+ ...|+......+.+. ...+.++||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999986422211 01 112333332333222 267899999998
Q ss_pred cCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcC
Q 011082 364 IKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDED 438 (494)
Q Consensus 364 i~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~ 438 (494)
.+ +.......+..+|++++|+|+++. ... ....++..+.. ...|.++|+||+|+.
T Consensus 82 ~~-------f~~~~~~~~~~aD~~llVvD~~~~-------~~~-~~~~~~~~~~~-----~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VN-------FMDEVAAALRLSDGVVLVVDVVEG-------VTS-NTERLIRHAIL-----EGLPIVLVINKIDRL 136 (213)
T ss_pred cc-------hHHHHHHHHHhCCEEEEEEECCCC-------CCH-HHHHHHHHHHH-----cCCCEEEEEECcccC
Confidence 65 334456778899999999999863 112 22223232211 258999999999975
No 238
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.37 E-value=1.3e-11 Score=123.19 Aligned_cols=125 Identities=22% Similarity=0.337 Sum_probs=83.7
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCC---C-------------ccccc------ceeecceeeEEeecCcceEEecCCCcc
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKP---A-------------VGHYS------FTTLRPNLGNMNFDDIQITVADIPGLI 364 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~---~-------------i~~~~------ftTl~p~~g~v~~~~~~~~l~DtPGli 364 (494)
..|+|+|.+|||||||+++|+...- . +.++. ..|+......+.+.+..+.++||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 4799999999999999999974311 1 11111 122333344667777899999999986
Q ss_pred CCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh--HH
Q 011082 365 KGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EE 442 (494)
Q Consensus 365 ~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~--~e 442 (494)
+ +.......+..+|++++|+|++... ......++..+.. .+.|.++++||+|+... ..
T Consensus 83 d-------f~~~~~~~l~~aD~~IlVvda~~g~--------~~~~~~i~~~~~~-----~~~P~iivvNK~D~~~a~~~~ 142 (267)
T cd04169 83 D-------FSEDTYRTLTAVDSAVMVIDAAKGV--------EPQTRKLFEVCRL-----RGIPIITFINKLDREGRDPLE 142 (267)
T ss_pred H-------HHHHHHHHHHHCCEEEEEEECCCCc--------cHHHHHHHHHHHh-----cCCCEEEEEECCccCCCCHHH
Confidence 4 3333456788999999999987631 1223333333322 36899999999998754 34
Q ss_pred HHHHHHHHc
Q 011082 443 VYEELERRV 451 (494)
Q Consensus 443 ~~~~L~~~~ 451 (494)
.++.+++.+
T Consensus 143 ~~~~l~~~l 151 (267)
T cd04169 143 LLDEIEEEL 151 (267)
T ss_pred HHHHHHHHH
Confidence 567777766
No 239
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=2.6e-12 Score=116.92 Aligned_cols=159 Identities=25% Similarity=0.302 Sum_probs=115.2
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCC---Cc--ccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHH
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKP---AV--GHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHI 381 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~---~i--~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i 381 (494)
-.|.|+|+.|||||||+.++-.... .. .+.-.+|...+.|++.+.+..+.+||.-|... +...+-.++
T Consensus 18 y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~-------lrSlw~~yY 90 (197)
T KOG0076|consen 18 YSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQES-------LRSLWKKYY 90 (197)
T ss_pred hhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHH-------HHHHHHHHH
Confidence 3689999999999999998754321 11 12334677778899999999999999999865 555677888
Q ss_pred HhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHH------HHc--CC
Q 011082 382 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELE------RRV--QG 453 (494)
Q Consensus 382 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~------~~~--~~ 453 (494)
..|+++++|||+++. +.++.-...+..+.. ...+...|.++.+||-|+.+..+. .+|. +.. +.
T Consensus 91 ~~~H~ii~viDa~~~-------eR~~~~~t~~~~v~~-~E~leg~p~L~lankqd~q~~~~~-~El~~~~~~~e~~~~rd 161 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDR-------ERFEESKTAFEKVVE-NEKLEGAPVLVLANKQDLQNAMEA-AELDGVFGLAELIPRRD 161 (197)
T ss_pred HHhceeEEeecCCCH-------HHHHHHHHHHHHHHH-HHHhcCCchhhhcchhhhhhhhhH-HHHHHHhhhhhhcCCcc
Confidence 999999999999872 222222222222221 234568999999999999876542 1222 222 45
Q ss_pred CCEEEEEcccCCCHHHHHHHHHHHhccc
Q 011082 454 VPIYPVCAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 454 ~~ii~ISA~~g~gI~~L~~~I~~~l~~~ 481 (494)
.++.+|||++|+||++-+.++...+...
T Consensus 162 ~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 162 NPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred CccccchhhhcccHHHHHHHHHHHHhhc
Confidence 6899999999999999999999988776
No 240
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.36 E-value=1.5e-11 Score=133.40 Aligned_cols=116 Identities=23% Similarity=0.342 Sum_probs=78.8
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHc---CCCCc-------------ccc------cceeecceeeEEeecCcceEEecCC
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISR---AKPAV-------------GHY------SFTTLRPNLGNMNFDDIQITVADIP 361 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~---~~~~i-------------~~~------~ftTl~p~~g~v~~~~~~~~l~DtP 361 (494)
....+|+|+|.+|||||||+++|+. .-... .++ ...|+......+.+++..+.++|||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4456899999999999999999963 11111 111 0123333344567778899999999
Q ss_pred CccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCC
Q 011082 362 GLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDG 439 (494)
Q Consensus 362 Gli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~ 439 (494)
|+.+ +.......+..+|++|+|+|+++.. ..+...++..... .+.|+|+++||+|+..
T Consensus 88 G~~d-------f~~~~~~~l~~aD~aIlVvDa~~gv--------~~~t~~l~~~~~~-----~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 88 GHED-------FSEDTYRTLTAVDSALMVIDAAKGV--------EPQTRKLMEVCRL-----RDTPIFTFINKLDRDG 145 (526)
T ss_pred Cchh-------hHHHHHHHHHHCCEEEEEEecCCCC--------CHHHHHHHHHHHh-----cCCCEEEEEECCcccc
Confidence 9865 3344566788999999999998631 2233444433322 3789999999999864
No 241
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.36 E-value=1.3e-11 Score=118.19 Aligned_cols=140 Identities=18% Similarity=0.182 Sum_probs=93.4
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeec--ceeeEEeec-----C--cceEEecCCCccCCccccccchhhHH
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLR--PNLGNMNFD-----D--IQITVADIPGLIKGAHENRGLGHAFL 378 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~--p~~g~v~~~-----~--~~~~l~DtPGli~~a~~~~~L~~~fl 378 (494)
+|+++|.+++|||||++++++..... .+. .|+. .....+.++ + ..+.+|||+|..+ +.....
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~-~~~-~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~-------~~~l~~ 72 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLG-RPS-WTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES-------VKSTRA 72 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC-CCC-cceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh-------HHHHHH
Confidence 58999999999999999999764322 222 2222 222334442 2 4689999999865 211223
Q ss_pred HHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhc-----------------ccCCCCEEEEEeCCCcCChH
Q 011082 379 RHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQE-----------------GLSDRPSLVVANKIDEDGAE 441 (494)
Q Consensus 379 ~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~-----------------~l~~~P~IlVlNKiDl~~~~ 441 (494)
.++..+|++|+|+|+++ ..+++.+..|+.++..... .-.+.|+|+|.||+|+....
T Consensus 73 ~~yr~ad~iIlVyDvtn-------~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r 145 (202)
T cd04102 73 VFYNQVNGIILVHDLTN-------RKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK 145 (202)
T ss_pred HHhCcCCEEEEEEECcC-------hHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc
Confidence 45678999999999998 4778888888888765321 11357999999999996532
Q ss_pred H--------HHHHHHHHcCCCCEEEEEcccC
Q 011082 442 E--------VYEELERRVQGVPIYPVCAVLE 464 (494)
Q Consensus 442 e--------~~~~L~~~~~~~~ii~ISA~~g 464 (494)
. ....+.+++ +.+.+.+++.+.
T Consensus 146 ~~~~~~~~~~~~~ia~~~-~~~~i~~~c~~~ 175 (202)
T cd04102 146 ESSGNLVLTARGFVAEQG-NAEEINLNCTNG 175 (202)
T ss_pred ccchHHHhhHhhhHHHhc-CCceEEEecCCc
Confidence 1 112334444 567788888754
No 242
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.36 E-value=1.3e-11 Score=117.71 Aligned_cols=156 Identities=20% Similarity=0.191 Sum_probs=117.0
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|+++|.+|+|||+|...+... ..+.+|..|.-+.....+.+++ ..+.++||+|..+ +...--.++..++
T Consensus 5 kvvvlG~~gVGKSal~~qf~~~-~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~-------~~~~~~~~~~~~~ 76 (196)
T KOG0395|consen 5 KVVVLGAGGVGKSALTIQFLTG-RFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEE-------FSAMRDLYIRNGD 76 (196)
T ss_pred EEEEECCCCCCcchheeeeccc-ccccccCCCccccceEEEEECCEEEEEEEEcCCCccc-------ChHHHHHhhccCc
Confidence 6899999999999998887754 3455576666666666777776 5678999999544 2222334578889
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEEc
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 461 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~ISA 461 (494)
..++|+++++ ..+++....+...+.. .......|+|+|.||+|+.... +.-..+...+ ..+++++||
T Consensus 77 gF~lVysitd-------~~SF~~~~~l~~~I~r-~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~-~~~f~E~Sa 147 (196)
T KOG0395|consen 77 GFLLVYSITD-------RSSFEEAKQLREQILR-VKGRDDVPIILVGNKCDLERERQVSEEEGKALARSW-GCAFIETSA 147 (196)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHH-hhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhc-CCcEEEeec
Confidence 9999999998 5788888888887732 2344567999999999997632 2233444444 567999999
Q ss_pred ccCCCHHHHHHHHHHHhcc
Q 011082 462 VLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 462 ~~g~gI~~L~~~I~~~l~~ 480 (494)
+...++++++..|...+..
T Consensus 148 k~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 148 KLNYNVDEVFYELVREIRL 166 (196)
T ss_pred cCCcCHHHHHHHHHHHHHh
Confidence 9999999999999887765
No 243
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.34 E-value=1.3e-11 Score=138.53 Aligned_cols=141 Identities=19% Similarity=0.241 Sum_probs=98.9
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcCCC---C---ccc------------ccceeecceeeEEeecCcceEEecCCCccC
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRAKP---A---VGH------------YSFTTLRPNLGNMNFDDIQITVADIPGLIK 365 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~~~---~---i~~------------~~ftTl~p~~g~v~~~~~~~~l~DtPGli~ 365 (494)
..+.+|+|+|.+|+|||||+++|....- . +.+ ...+|++.....+.+++..+.++||||+.+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 3456899999999999999999964211 1 111 245777778888888999999999999975
Q ss_pred CccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh--HHH
Q 011082 366 GAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEV 443 (494)
Q Consensus 366 ~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~--~e~ 443 (494)
+.......+..+|++++|+|+.+.. ..+...++..+.. .+.|.|+|+||+|+... +..
T Consensus 88 -------~~~~~~~~l~~~D~~ilVvda~~g~--------~~~~~~~~~~~~~-----~~~p~ivviNK~D~~~~~~~~~ 147 (689)
T TIGR00484 88 -------FTVEVERSLRVLDGAVAVLDAVGGV--------QPQSETVWRQANR-----YEVPRIAFVNKMDKTGANFLRV 147 (689)
T ss_pred -------hhHHHHHHHHHhCEEEEEEeCCCCC--------ChhHHHHHHHHHH-----cCCCEEEEEECCCCCCCCHHHH
Confidence 2234567788999999999988631 1222333333332 26899999999999853 455
Q ss_pred HHHHHHHcCCC---CEEEEEcccC
Q 011082 444 YEELERRVQGV---PIYPVCAVLE 464 (494)
Q Consensus 444 ~~~L~~~~~~~---~ii~ISA~~g 464 (494)
++.+++.+... .++++|+..+
T Consensus 148 ~~~i~~~l~~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 148 VNQIKQRLGANAVPIQLPIGAEDN 171 (689)
T ss_pred HHHHHHHhCCCceeEEeccccCCC
Confidence 66777665322 2677777654
No 244
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1.4e-11 Score=129.26 Aligned_cols=159 Identities=21% Similarity=0.205 Sum_probs=119.2
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCC---------------cccccceeecceeeEEeecC---cceEEecCCCccCC
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPA---------------VGHYSFTTLRPNLGNMNFDD---IQITVADIPGLIKG 366 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~---------------i~~~~ftTl~p~~g~v~~~~---~~~~l~DtPGli~~ 366 (494)
.+..++||-.-..|||||..+|....-. +....+.|+..+...+.+.+ +.+.++||||+.+
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD- 137 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD- 137 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc-
Confidence 4557888888899999999998643211 12234578888888888877 7889999999987
Q ss_pred ccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh--HHHH
Q 011082 367 AHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVY 444 (494)
Q Consensus 367 a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~--~e~~ 444 (494)
++...-+.+..|+.+|+|||++... . .+.+.+-..++. .+..+|.|+||+|++.+ +...
T Consensus 138 ------Fs~EVsRslaac~G~lLvVDA~qGv--------q--AQT~anf~lAfe---~~L~iIpVlNKIDlp~adpe~V~ 198 (650)
T KOG0462|consen 138 ------FSGEVSRSLAACDGALLVVDASQGV--------Q--AQTVANFYLAFE---AGLAIIPVLNKIDLPSADPERVE 198 (650)
T ss_pred ------ccceehehhhhcCceEEEEEcCcCc--------h--HHHHHHHHHHHH---cCCeEEEeeeccCCCCCCHHHHH
Confidence 5555667788899999999998742 1 122222222222 25678999999999865 5677
Q ss_pred HHHHHHc--CCCCEEEEEcccCCCHHHHHHHHHHHhcccCC
Q 011082 445 EELERRV--QGVPIYPVCAVLEEGVPELKVGLRMLVNGEKS 483 (494)
Q Consensus 445 ~~L~~~~--~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~~ 483 (494)
.++.+.+ +..+++.+||++|.|+++|+++|.+.++.-..
T Consensus 199 ~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~ 239 (650)
T KOG0462|consen 199 NQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPPKG 239 (650)
T ss_pred HHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCCCCC
Confidence 7787777 56689999999999999999999999876544
No 245
>PRK00007 elongation factor G; Reviewed
Probab=99.33 E-value=1.8e-11 Score=137.38 Aligned_cols=115 Identities=19% Similarity=0.249 Sum_probs=84.4
Q ss_pred ccceeeeeCCCCCcHHHHHHHHH---cCCCCc---c------------cccceeecceeeEEeecCcceEEecCCCccCC
Q 011082 305 SIADVGLVGMPSAGKSTLLGAIS---RAKPAV---G------------HYSFTTLRPNLGNMNFDDIQITVADIPGLIKG 366 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt---~~~~~i---~------------~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~ 366 (494)
.+.+|+|+|.+|+|||||+++|. +....+ . ....+|++.....+.+.+..+.++||||+.+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~- 87 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD- 87 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH-
Confidence 45689999999999999999996 321111 1 2455788887788888899999999999865
Q ss_pred ccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCC
Q 011082 367 AHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDG 439 (494)
Q Consensus 367 a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~ 439 (494)
+.......+..+|++|+|+|+... ...+...++..+.. .+.|.|+++||+|+..
T Consensus 88 ------f~~ev~~al~~~D~~vlVvda~~g--------~~~qt~~~~~~~~~-----~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 88 ------FTIEVERSLRVLDGAVAVFDAVGG--------VEPQSETVWRQADK-----YKVPRIAFVNKMDRTG 141 (693)
T ss_pred ------HHHHHHHHHHHcCEEEEEEECCCC--------cchhhHHHHHHHHH-----cCCCEEEEEECCCCCC
Confidence 333456778889999999998763 22333444444433 2689999999999864
No 246
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=1.9e-11 Score=108.93 Aligned_cols=152 Identities=18% Similarity=0.158 Sum_probs=103.0
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecc--eeeEEeecC--cceEEecCCCccCCccccccchhhHHHH
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRP--NLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRH 380 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p--~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~ 380 (494)
-..++.++|+.|.|||.||..+...+.+- ....|+.. -...+.+.+ ..+.+|||.|..+ +..-...+
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkD--dssHTiGveFgSrIinVGgK~vKLQIWDTAGQEr-------FRSVtRsY 78 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKD--DSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQER-------FRSVTRSY 78 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcc--cccceeeeeecceeeeecCcEEEEEEeecccHHH-------HHHHHHHH
Confidence 34578999999999999999998764432 12223322 234455555 5789999999876 22223456
Q ss_pred HHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHH-HHHHHHc--CCCCEE
Q 011082 381 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVY-EELERRV--QGVPIY 457 (494)
Q Consensus 381 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~-~~L~~~~--~~~~ii 457 (494)
++.|-..++|+|++. .++++.+..|+.....+++ .+.-+|++.||-||....++. .+..+.. ....++
T Consensus 79 YRGAAGAlLVYD~Ts-------rdsfnaLtnWL~DaR~lAs--~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~fl 149 (214)
T KOG0086|consen 79 YRGAAGALLVYDITS-------RDSFNALTNWLTDARTLAS--PNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFL 149 (214)
T ss_pred hccccceEEEEeccc-------hhhHHHHHHHHHHHHhhCC--CcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeee
Confidence 778889999999987 5788888888887765432 234445555999998765432 1111221 245678
Q ss_pred EEEcccCCCHHHHHHHH
Q 011082 458 PVCAVLEEGVPELKVGL 474 (494)
Q Consensus 458 ~ISA~~g~gI~~L~~~I 474 (494)
.+||++|+|+++-+-..
T Consensus 150 ETSa~TGeNVEEaFl~c 166 (214)
T KOG0086|consen 150 ETSALTGENVEEAFLKC 166 (214)
T ss_pred eecccccccHHHHHHHH
Confidence 99999999999865544
No 247
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.31 E-value=1.8e-11 Score=130.54 Aligned_cols=157 Identities=22% Similarity=0.234 Sum_probs=101.7
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCC-------------------------cc------cccceeecceeeEEeecCcceE
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPA-------------------------VG------HYSFTTLRPNLGNMNFDDIQIT 356 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~-------------------------i~------~~~ftTl~p~~g~v~~~~~~~~ 356 (494)
+|+++|..++|||||+.+|+..--. +. .....|.+.....+.+++..+.
T Consensus 9 nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~i~ 88 (446)
T PTZ00141 9 NLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYFT 88 (446)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeEEE
Confidence 7999999999999999998642100 01 1123566666666777778999
Q ss_pred EecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCC-EEEEEeCC
Q 011082 357 VADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP-SLVVANKI 435 (494)
Q Consensus 357 l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P-~IlVlNKi 435 (494)
++||||+.+ +.......+..+|++++|+|+....... +.....+..+.+..+.. ...| .|+++||+
T Consensus 89 lIDtPGh~~-------f~~~~~~g~~~aD~ailVVda~~G~~e~-~~~~~~qT~eh~~~~~~-----~gi~~iiv~vNKm 155 (446)
T PTZ00141 89 IIDAPGHRD-------FIKNMITGTSQADVAILVVASTAGEFEA-GISKDGQTREHALLAFT-----LGVKQMIVCINKM 155 (446)
T ss_pred EEECCChHH-------HHHHHHHhhhhcCEEEEEEEcCCCceec-ccCCCccHHHHHHHHHH-----cCCCeEEEEEEcc
Confidence 999999764 5556667788999999999988642100 00011233333333322 2555 56899999
Q ss_pred CcCC---h----HHHHHHHHHHc-------CCCCEEEEEcccCCCHHH------------HHHHHHHH
Q 011082 436 DEDG---A----EEVYEELERRV-------QGVPIYPVCAVLEEGVPE------------LKVGLRML 477 (494)
Q Consensus 436 Dl~~---~----~e~~~~L~~~~-------~~~~ii~ISA~~g~gI~~------------L~~~I~~~ 477 (494)
|... . +++.+++...+ ...++|++||.+|+|+.+ |++.|..+
T Consensus 156 D~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~ 223 (446)
T PTZ00141 156 DDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTL 223 (446)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCC
Confidence 9532 1 23344444433 146799999999999964 77776554
No 248
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.31 E-value=4.9e-11 Score=129.55 Aligned_cols=116 Identities=21% Similarity=0.301 Sum_probs=77.8
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcCC---C---Cc----------ccc------cceeecceeeEEeecCcceEEecCC
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRAK---P---AV----------GHY------SFTTLRPNLGNMNFDDIQITVADIP 361 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~~---~---~i----------~~~------~ftTl~p~~g~v~~~~~~~~l~DtP 361 (494)
....+|+|||.++||||||+++|.... . .+ .++ ...|+......+.+.+..+.++|||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 445689999999999999999985211 0 11 111 1123333445566777899999999
Q ss_pred CccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCC
Q 011082 362 GLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDG 439 (494)
Q Consensus 362 Gli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~ 439 (494)
|+.+ +.......+..+|++|+|+|++.. ...+...++..+.. .+.|.|+++||+|+..
T Consensus 89 G~~d-------f~~~~~~~l~~aD~aIlVvDa~~g--------v~~~t~~l~~~~~~-----~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHED-------FSEDTYRTLTAVDNCLMVIDAAKG--------VETRTRKLMEVTRL-----RDTPIFTFMNKLDRDI 146 (527)
T ss_pred Chhh-------HHHHHHHHHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHh-----cCCCEEEEEECccccC
Confidence 9854 334456678899999999998863 12233344433322 3689999999999863
No 249
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.30 E-value=1.9e-11 Score=110.21 Aligned_cols=151 Identities=19% Similarity=0.201 Sum_probs=107.6
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeE------Eeec-C--cceEEecCCCccCCccccccchhhHH
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGN------MNFD-D--IQITVADIPGLIKGAHENRGLGHAFL 378 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~------v~~~-~--~~~~l~DtPGli~~a~~~~~L~~~fl 378 (494)
++.+||.+-+|||+||+.+|.-+..-- .+|++|+ +.+. + ..+.+|||.|..+ +.....
T Consensus 10 rlivigdstvgkssll~~ft~gkfael------sdptvgvdffarlie~~pg~riklqlwdtagqer-------frsitk 76 (213)
T KOG0091|consen 10 RLIVIGDSTVGKSSLLRYFTEGKFAEL------SDPTVGVDFFARLIELRPGYRIKLQLWDTAGQER-------FRSITK 76 (213)
T ss_pred EEEEEcCCcccHHHHHHHHhcCccccc------CCCccchHHHHHHHhcCCCcEEEEEEeeccchHH-------HHHHHH
Confidence 567899999999999999997643221 1455443 3332 2 5689999999876 333345
Q ss_pred HHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHH----HHHHHHHHcCCC
Q 011082 379 RHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE----VYEELERRVQGV 454 (494)
Q Consensus 379 ~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e----~~~~L~~~~~~~ 454 (494)
++++++-.+++|+|+++ ..+++....|+.|-..+..+-...-..+|..|+|+.+..+ ..+.+... .+.
T Consensus 77 syyrnsvgvllvyditn-------r~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~-hgM 148 (213)
T KOG0091|consen 77 SYYRNSVGVLLVYDITN-------RESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAAS-HGM 148 (213)
T ss_pred HHhhcccceEEEEeccc-------hhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHh-cCc
Confidence 67788888999999998 5788999999888665433222233445569999986532 23445554 378
Q ss_pred CEEEEEcccCCCHHHHHHHHHHHhc
Q 011082 455 PIYPVCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 455 ~ii~ISA~~g~gI~~L~~~I~~~l~ 479 (494)
.+|++||+++.|+++-++.|.+-+.
T Consensus 149 ~FVETSak~g~NVeEAF~mlaqeIf 173 (213)
T KOG0091|consen 149 AFVETSAKNGCNVEEAFDMLAQEIF 173 (213)
T ss_pred eEEEecccCCCcHHHHHHHHHHHHH
Confidence 9999999999999998887766544
No 250
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.29 E-value=7.4e-11 Score=114.63 Aligned_cols=111 Identities=18% Similarity=0.258 Sum_probs=73.8
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcc----------c------ccceeecceeeEEeec----------CcceEEecCC
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVG----------H------YSFTTLRPNLGNMNFD----------DIQITVADIP 361 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~----------~------~~ftTl~p~~g~v~~~----------~~~~~l~DtP 361 (494)
.|+++|..++|||||+.+|....-.+. + ....|+......+.+. +..+.++|||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999975321110 0 1123333333333343 4678999999
Q ss_pred CccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcC
Q 011082 362 GLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDED 438 (494)
Q Consensus 362 Gli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~ 438 (494)
|+.+ +.......+..+|++++|+|+.... ..+...++..... ...|.|+|+||+|+.
T Consensus 82 G~~~-------f~~~~~~~l~~aD~~ilVvD~~~g~--------~~~t~~~l~~~~~-----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVD-------FSSEVTAALRLCDGALVVVDAVEGV--------CVQTETVLRQALK-----ERVKPVLVINKIDRL 138 (222)
T ss_pred Cccc-------cHHHHHHHHHhcCeeEEEEECCCCC--------CHHHHHHHHHHHH-----cCCCEEEEEECCCcc
Confidence 9976 4445677889999999999998731 2222333333321 257999999999986
No 251
>PRK13351 elongation factor G; Reviewed
Probab=99.29 E-value=3.2e-11 Score=135.55 Aligned_cols=116 Identities=24% Similarity=0.340 Sum_probs=80.3
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCC------------cccc------cceeecceeeEEeecCcceEEecCCCccCC
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPA------------VGHY------SFTTLRPNLGNMNFDDIQITVADIPGLIKG 366 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~------------i~~~------~ftTl~p~~g~v~~~~~~~~l~DtPGli~~ 366 (494)
...+|+|+|..|+|||||+++|...... ..++ ...|+......+.+.+..+.++||||+.+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d- 85 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID- 85 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH-
Confidence 3458999999999999999999743110 1111 22345555566777788999999999865
Q ss_pred ccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh
Q 011082 367 AHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA 440 (494)
Q Consensus 367 a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~ 440 (494)
+.......+..+|++++|+|++... . .+...++..+.. .+.|.++|+||+|+...
T Consensus 86 ------f~~~~~~~l~~aD~~ilVvd~~~~~-------~-~~~~~~~~~~~~-----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 ------FTGEVERSLRVLDGAVVVFDAVTGV-------Q-PQTETVWRQADR-----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred ------HHHHHHHHHHhCCEEEEEEeCCCCC-------C-HHHHHHHHHHHh-----cCCCEEEEEECCCCCCC
Confidence 3334566788999999999998731 1 222333333332 26899999999998754
No 252
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.28 E-value=8.2e-11 Score=112.88 Aligned_cols=158 Identities=19% Similarity=0.120 Sum_probs=104.9
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeec---CcceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD---DIQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~---~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
.+|+++|+.|||||||+++|.+..... .|+.|......+..... ...+.+|||+|+.+ +...+-.+...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~-------~~~~~~~y~~~ 77 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPE-GYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEE-------YRSLRPEYYRG 77 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcc-cCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHH-------HHHHHHHHhcC
Confidence 479999999999999999999864332 22222222333322222 25689999999976 33334456688
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHH-------------HHH
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEEL-------------ERR 450 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L-------------~~~ 450 (494)
++.+++++|.... ....+....+..++..... ...|+++|.||+|+.........+ ...
T Consensus 78 ~~~~l~~~d~~~~------~~~~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (219)
T COG1100 78 ANGILIVYDSTLR------ESSDELTEEWLEELRELAP--DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPK 149 (219)
T ss_pred CCEEEEEEecccc------hhhhHHHHHHHHHHHHhCC--CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhH
Confidence 9999999998862 2344555566666654422 358999999999998753211111 100
Q ss_pred ---c--CCCCEEEEEcc--cCCCHHHHHHHHHHHhcc
Q 011082 451 ---V--QGVPIYPVCAV--LEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 451 ---~--~~~~ii~ISA~--~g~gI~~L~~~I~~~l~~ 480 (494)
. ....++.+|+. .+.++.+++..+...+..
T Consensus 150 ~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 150 AVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred HhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHH
Confidence 0 12338999999 999999999988887754
No 253
>PRK13768 GTPase; Provisional
Probab=99.26 E-value=4.5e-11 Score=118.47 Aligned_cols=120 Identities=23% Similarity=0.297 Sum_probs=79.6
Q ss_pred ceEEecCCCccCCccccccchhhHHHHHHh--hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEE
Q 011082 354 QITVADIPGLIKGAHENRGLGHAFLRHIER--TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 431 (494)
Q Consensus 354 ~~~l~DtPGli~~a~~~~~L~~~fl~~i~~--ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlV 431 (494)
.++++||||.++.... ..+...+.+++.. ++++++|+|++.. ..+.......+..+... ...+.|.|+|
T Consensus 98 ~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~~~~ii~liD~~~~------~~~~d~~~~~~l~~~~~--~~~~~~~i~v 168 (253)
T PRK13768 98 DYVLVDTPGQMELFAF-RESGRKLVERLSGSSKSVVVFLIDAVLA------KTPSDFVSLLLLALSVQ--LRLGLPQIPV 168 (253)
T ss_pred CEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcCCeEEEEEechHHh------CCHHHHHHHHHHHHHHH--HHcCCCEEEE
Confidence 6899999998875432 3466677788877 8999999999762 12222211111111110 1137899999
Q ss_pred EeCCCcCChHHH---HHHH----------------------------HHHcCCCCEEEEEcccCCCHHHHHHHHHHHhcc
Q 011082 432 ANKIDEDGAEEV---YEEL----------------------------ERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 432 lNKiDl~~~~e~---~~~L----------------------------~~~~~~~~ii~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
+||+|+.+..+. .+.+ .+..+..+++++||++++|+++|+++|.+.+..
T Consensus 169 ~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 169 LNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred EEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 999999865332 1111 111233589999999999999999999998865
Q ss_pred cC
Q 011082 481 EK 482 (494)
Q Consensus 481 ~~ 482 (494)
..
T Consensus 249 ~~ 250 (253)
T PRK13768 249 GE 250 (253)
T ss_pred CC
Confidence 43
No 254
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.26 E-value=1.4e-10 Score=119.78 Aligned_cols=166 Identities=16% Similarity=0.154 Sum_probs=108.5
Q ss_pred eeeeeCCCCCcHHHHHHHHHcC----CCC------------cccccc---eeeccee---eEEeec---C--cceEEecC
Q 011082 308 DVGLVGMPSAGKSTLLGAISRA----KPA------------VGHYSF---TTLRPNL---GNMNFD---D--IQITVADI 360 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~----~~~------------i~~~~f---tTl~p~~---g~v~~~---~--~~~~l~Dt 360 (494)
-||+||+.|+|||||+|++++. ... +.+.++ +|.+|.. ..+.+. + .++.++||
T Consensus 19 yIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDc 98 (492)
T TIGR02836 19 YIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDC 98 (492)
T ss_pred EEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEEC
Confidence 6899999999999999999987 222 345556 8888876 333332 1 57899999
Q ss_pred CCccCCccccccchhh----------------------HHHHHH-hhceeeEEE-ecCCCCCCCCCCCCHHHHHHHHHHH
Q 011082 361 PGLIKGAHENRGLGHA----------------------FLRHIE-RTKVLAYVV-DLASGLDGRKGIKPWKQLRDLIIEL 416 (494)
Q Consensus 361 PGli~~a~~~~~L~~~----------------------fl~~i~-~ad~ll~Vv-D~s~~~~~~~~~~~~~~~~~l~~eL 416 (494)
+|+......+.--... ..+.+. .+++.|+|. |.+-. ........+.-..+..+|
T Consensus 99 vG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~--dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 99 VGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTIT--DIPREDYVEAEERVIEEL 176 (492)
T ss_pred CCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCcc--ccccccchHHHHHHHHHH
Confidence 9998743332111111 244566 889988888 76510 001123455566777777
Q ss_pred HhhhcccCCCCEEEEEeCCCcCC--hHHHHHHHHHHcCCCCEEEEEcccCCCHHHHHHHHHHHhcccC
Q 011082 417 EHHQEGLSDRPSLVVANKIDEDG--AEEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 417 ~~~~~~l~~~P~IlVlNKiDl~~--~~e~~~~L~~~~~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
+.. ++|.|+|+||+|... ..+..+.+.+.+ +.+++++|+..- .-+++...+.+.|.+-+
T Consensus 177 k~~-----~kPfiivlN~~dp~~~et~~l~~~l~eky-~vpvl~v~c~~l-~~~DI~~il~~vL~EFP 237 (492)
T TIGR02836 177 KEL-----NKPFIILLNSTHPYHPETEALRQELEEKY-DVPVLAMDVESM-RESDILSVLEEVLYEFP 237 (492)
T ss_pred Hhc-----CCCEEEEEECcCCCCchhHHHHHHHHHHh-CCceEEEEHHHc-CHHHHHHHHHHHHhcCC
Confidence 663 799999999999542 233445666665 478899998643 35566666666665543
No 255
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.26 E-value=1.4e-10 Score=106.95 Aligned_cols=153 Identities=21% Similarity=0.238 Sum_probs=110.3
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCC-------ccccc---ceeecceeeEEeecC-cceEEecCCCccCCccccccch
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPA-------VGHYS---FTTLRPNLGNMNFDD-IQITVADIPGLIKGAHENRGLG 374 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~-------i~~~~---ftTl~p~~g~v~~~~-~~~~l~DtPGli~~a~~~~~L~ 374 (494)
..+|+++|+-+|||||++++++...+. ...+. .||+....|.+.+.+ ..+.++||||+.+ +.
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~R-------F~ 82 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQER-------FK 82 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHH-------HH
Confidence 347999999999999999999976431 12233 388888889988887 8899999999976 33
Q ss_pred hhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh---HHHHHHHHHHc
Q 011082 375 HAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERRV 451 (494)
Q Consensus 375 ~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~---~e~~~~L~~~~ 451 (494)
..+--..+.+..+++++|.+.+. .. ....++..+..- ...|.+|..||.|+.++ +.+.+.+...+
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~-------~~-~a~~ii~f~~~~----~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~ 150 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPI-------TF-HAEEIIDFLTSR----NPIPVVVAINKQDLFDALPPEKIREALKLEL 150 (187)
T ss_pred HHHHHHhCCcceEEEEEecCCCc-------ch-HHHHHHHHHhhc----cCCCEEEEeeccccCCCCCHHHHHHHHHhcc
Confidence 23333456789999999998742 22 333444444322 12899999999999875 34444444332
Q ss_pred CCCCEEEEEcccCCCHHHHHHHHHHH
Q 011082 452 QGVPIYPVCAVLEEGVPELKVGLRML 477 (494)
Q Consensus 452 ~~~~ii~ISA~~g~gI~~L~~~I~~~ 477 (494)
...++|.++|..+++..+.++.+...
T Consensus 151 ~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 151 LSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred CCCceeeeecccchhHHHHHHHHHhh
Confidence 36899999999999999988877655
No 256
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=6.5e-11 Score=124.29 Aligned_cols=154 Identities=27% Similarity=0.326 Sum_probs=105.8
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeec-CcceEEecCCCccCCccccccchhhHHHHHH
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD-DIQITVADIPGLIKGAHENRGLGHAFLRHIE 382 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~-~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~ 382 (494)
+..|.|-|+|.-..||||||.+|-+........-+.|...-...+.++ +..++|.||||+.. +...-.+-..
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaA-------F~aMRaRGA~ 223 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAA-------FSAMRARGAN 223 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHH-------HHHHHhccCc
Confidence 467899999999999999999998876655444444533333334444 48999999999854 2222233345
Q ss_pred hhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh--HHHHHHHHHH------c-CC
Q 011082 383 RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYEELERR------V-QG 453 (494)
Q Consensus 383 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~--~e~~~~L~~~------~-~~ 453 (494)
-+|++++|+.+.+..+ .+..+.+.-.+ -++.|+|+.+||||.++. +..+.+|..+ + .+
T Consensus 224 vtDIvVLVVAadDGVm--------pQT~EaIkhAk-----~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGd 290 (683)
T KOG1145|consen 224 VTDIVVLVVAADDGVM--------PQTLEAIKHAK-----SANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGD 290 (683)
T ss_pred cccEEEEEEEccCCcc--------HhHHHHHHHHH-----hcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCc
Confidence 6799999999887433 22211111111 148999999999998865 3444444332 1 45
Q ss_pred CCEEEEEcccCCCHHHHHHHHHHH
Q 011082 454 VPIYPVCAVLEEGVPELKVGLRML 477 (494)
Q Consensus 454 ~~ii~ISA~~g~gI~~L~~~I~~~ 477 (494)
.++++|||++|+|++.|.+.+.-+
T Consensus 291 VQvipiSAl~g~nl~~L~eaill~ 314 (683)
T KOG1145|consen 291 VQVIPISALTGENLDLLEEAILLL 314 (683)
T ss_pred eeEEEeecccCCChHHHHHHHHHH
Confidence 789999999999999999988654
No 257
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=5.3e-11 Score=104.80 Aligned_cols=153 Identities=24% Similarity=0.328 Sum_probs=109.9
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhcee
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 387 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~l 387 (494)
+|..+|..+|||||+|..|.-..+. ....|....+..|.+.+..|.+||..|... +..-|..++..+..+
T Consensus 19 ~ilmlGLd~aGKTtiLyKLkl~~~~---~~ipTvGFnvetVtykN~kfNvwdvGGqd~-------iRplWrhYy~gtqgl 88 (180)
T KOG0071|consen 19 RILMLGLDAAGKTTILYKLKLGQSV---TTIPTVGFNVETVTYKNVKFNVWDVGGQDK-------IRPLWRHYYTGTQGL 88 (180)
T ss_pred eEEEEecccCCceehhhHHhcCCCc---ccccccceeEEEEEeeeeEEeeeeccCchh-------hhHHHHhhccCCceE
Confidence 6888999999999999999765332 122344555677889999999999998754 444455667788999
Q ss_pred eEEEecCCCCCCCCCCCCHHHHHHHHHHHHhh--hcccCCCCEEEEEeCCCcCChH---HHHHHHH--HHc-CCCCEEEE
Q 011082 388 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHH--QEGLSDRPSLVVANKIDEDGAE---EVYEELE--RRV-QGVPIYPV 459 (494)
Q Consensus 388 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~--~~~l~~~P~IlVlNKiDl~~~~---e~~~~L~--~~~-~~~~ii~I 459 (494)
|||+|.++. +.+++..+||... .+.+...|.+|.+||-|++++. ++.+.+. ... ..+.+.++
T Consensus 89 IFV~Dsa~~----------dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~ 158 (180)
T KOG0071|consen 89 IFVVDSADR----------DRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPS 158 (180)
T ss_pred EEEEeccch----------hhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeecc
Confidence 999998872 3444445555543 2456678888889999998753 3322221 111 34668899
Q ss_pred EcccCCCHHHHHHHHHHHhcc
Q 011082 460 CAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~~ 480 (494)
||.++.|+.+-+.+|.+.+.+
T Consensus 159 ~a~~gdgL~eglswlsnn~~~ 179 (180)
T KOG0071|consen 159 CALSGDGLKEGLSWLSNNLKE 179 (180)
T ss_pred ccccchhHHHHHHHHHhhccC
Confidence 999999999999999887653
No 258
>PLN00023 GTP-binding protein; Provisional
Probab=99.24 E-value=4e-11 Score=121.55 Aligned_cols=117 Identities=20% Similarity=0.242 Sum_probs=81.1
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecc--eeeEEeec---------------CcceEEecCCCccCCccc
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRP--NLGNMNFD---------------DIQITVADIPGLIKGAHE 369 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p--~~g~v~~~---------------~~~~~l~DtPGli~~a~~ 369 (494)
.+|+|+|..|+|||||++++.+.... ..+. .|+.. ....+.++ ...+.||||+|....
T Consensus 22 iKIVLLGdsGVGKTSLI~rf~~g~F~-~~~~-pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf--- 96 (334)
T PLN00023 22 VRVLVVGDSGVGKSSLVHLIVKGSSI-ARPP-QTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY--- 96 (334)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCcc-cccC-CceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh---
Confidence 37999999999999999999976432 2221 12222 22334442 145899999998652
Q ss_pred cccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhc----------ccCCCCEEEEEeCCCcCC
Q 011082 370 NRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQE----------GLSDRPSLVVANKIDEDG 439 (494)
Q Consensus 370 ~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~----------~l~~~P~IlVlNKiDl~~ 439 (494)
....-.++..++++|+|+|+++ ..++..+..|+.++..... ...+.|+|||.||+|+..
T Consensus 97 ----rsL~~~yyr~AdgiILVyDITd-------r~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 97 ----KDCRSLFYSQINGVIFVHDLSQ-------RRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred ----hhhhHHhccCCCEEEEEEeCCC-------HHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 2222345778999999999998 4677888888888876521 112579999999999965
No 259
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.24 E-value=1.2e-10 Score=113.34 Aligned_cols=132 Identities=17% Similarity=0.286 Sum_probs=84.8
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeE---EeecCcceEEecCCCccCCccccccchhhHHHH
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGN---MNFDDIQITVADIPGLIKGAHENRGLGHAFLRH 380 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~---v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~ 380 (494)
.....|+++|.+|+|||||+++|.+.... ++.....|. +...+.++.++||||.+ ...+..
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~------~~~~~~~g~i~i~~~~~~~i~~vDtPg~~----------~~~l~~ 100 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTK------QNISDIKGPITVVTGKKRRLTFIECPNDI----------NAMIDI 100 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhccc------CccccccccEEEEecCCceEEEEeCCchH----------HHHHHH
Confidence 34567999999999999999999875211 111112221 22345789999999853 244567
Q ss_pred HHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEE-EEeCCCcCChH----HHHHHHHH-----H
Q 011082 381 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLV-VANKIDEDGAE----EVYEELER-----R 450 (494)
Q Consensus 381 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~Il-VlNKiDl~~~~----e~~~~L~~-----~ 450 (494)
+..+|++++|+|++... ......++..+..+ ..|.++ |+||+|+.... +..+.|++ .
T Consensus 101 ak~aDvVllviDa~~~~--------~~~~~~i~~~l~~~-----g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~ 167 (225)
T cd01882 101 AKVADLVLLLIDASFGF--------EMETFEFLNILQVH-----GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEV 167 (225)
T ss_pred HHhcCEEEEEEecCcCC--------CHHHHHHHHHHHHc-----CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhh
Confidence 88999999999987632 12223333333322 467554 99999996432 22333433 2
Q ss_pred cCCCCEEEEEcccC
Q 011082 451 VQGVPIYPVCAVLE 464 (494)
Q Consensus 451 ~~~~~ii~ISA~~g 464 (494)
++..+++++||++.
T Consensus 168 ~~~~ki~~iSa~~~ 181 (225)
T cd01882 168 YQGAKLFYLSGIVH 181 (225)
T ss_pred CCCCcEEEEeeccC
Confidence 36679999999876
No 260
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.23 E-value=1.7e-11 Score=109.87 Aligned_cols=153 Identities=20% Similarity=0.232 Sum_probs=107.3
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecce--eeEEeecC--cceEEecCCCccCCccccccchhhHHHHHH
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPN--LGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIE 382 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~--~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~ 382 (494)
.+|.|+|..-+|||||+-+....+. .....+|+... ...+.+.+ ..+.||||.|..+...++ . -+++
T Consensus 14 FK~VLLGEGCVGKtSLVLRy~EnkF--n~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALG----P---IYYR 84 (218)
T KOG0088|consen 14 FKIVLLGEGCVGKTSLVLRYVENKF--NCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALG----P---IYYR 84 (218)
T ss_pred eEEEEEcCCccchhHHHHHHHHhhc--chhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccC----c---eEEe
Confidence 4689999999999999877765533 22233343322 23445555 568999999997643322 1 2467
Q ss_pred hhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHH----HHHHHHcCCCCEEE
Q 011082 383 RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVY----EELERRVQGVPIYP 458 (494)
Q Consensus 383 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~----~~L~~~~~~~~ii~ 458 (494)
.++..|+|+|+++ ++++...+.|..||..... ...-.+||.||+||.....+. +...+. -+..++.
T Consensus 85 gSnGalLVyDITD-------rdSFqKVKnWV~Elr~mlG--nei~l~IVGNKiDLEeeR~Vt~qeAe~YAes-vGA~y~e 154 (218)
T KOG0088|consen 85 GSNGALLVYDITD-------RDSFQKVKNWVLELRTMLG--NEIELLIVGNKIDLEEERQVTRQEAEAYAES-VGALYME 154 (218)
T ss_pred CCCceEEEEeccc-------hHHHHHHHHHHHHHHHHhC--CeeEEEEecCcccHHHhhhhhHHHHHHHHHh-hchhhee
Confidence 8899999999998 5888999999999877532 245667788999997654321 111222 3567899
Q ss_pred EEcccCCCHHHHHHHHHHHh
Q 011082 459 VCAVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 459 ISA~~g~gI~~L~~~I~~~l 478 (494)
+||+.+.||.+||+.+...+
T Consensus 155 TSAk~N~Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 155 TSAKDNVGISELFESLTAKM 174 (218)
T ss_pred cccccccCHHHHHHHHHHHH
Confidence 99999999999999886554
No 261
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.21 E-value=8.1e-11 Score=116.26 Aligned_cols=129 Identities=19% Similarity=0.269 Sum_probs=82.6
Q ss_pred eeccceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCCcccc---ccchhhHH
Q 011082 303 LKSIADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN---RGLGHAFL 378 (494)
Q Consensus 303 lk~~~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~---~~L~~~fl 378 (494)
+....+|+|+|.+|+|||||+|+|++... .+..+..+|..........++..+.++||||+.+..... ........
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 34556899999999999999999999864 456676777777776667778899999999998753211 11111122
Q ss_pred HHHH--hhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHh-hhcccCCCCEEEEEeCCCcCC
Q 011082 379 RHIE--RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEH-HQEGLSDRPSLVVANKIDEDG 439 (494)
Q Consensus 379 ~~i~--~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~-~~~~l~~~P~IlVlNKiDl~~ 439 (494)
+++. ..+++++|..+.... .... ...++..+.. +...+ ..++|+|+||+|...
T Consensus 108 ~~l~~~~idvIL~V~rlD~~r------~~~~-d~~llk~I~e~fG~~i-~~~~ivV~T~~d~~~ 163 (249)
T cd01853 108 RYLKKKTPDVVLYVDRLDMYR------RDYL-DLPLLRAITDSFGPSI-WRNAIVVLTHAASSP 163 (249)
T ss_pred HHHhccCCCEEEEEEcCCCCC------CCHH-HHHHHHHHHHHhChhh-HhCEEEEEeCCccCC
Confidence 2232 457888887655421 1112 1233333333 22222 367999999999853
No 262
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=1.5e-10 Score=122.34 Aligned_cols=153 Identities=28% Similarity=0.260 Sum_probs=105.4
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeec---CcceEEecCCCccCCccccccchhhHHHHHH
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD---DIQITVADIPGLIKGAHENRGLGHAFLRHIE 382 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~---~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~ 382 (494)
.|.|.++|.--.||||||..|-+.+.....--.-|.+.-...+.++ ...++|+||||+... ...-.+-..
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAF-------t~mRaRGa~ 77 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAF-------TAMRARGAS 77 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHH-------HHHHhcCCc
Confidence 4689999999999999999998876665555555544333344443 368999999998541 111122345
Q ss_pred hhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH--HHHHHHHHH------c-CC
Q 011082 383 RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE--EVYEELERR------V-QG 453 (494)
Q Consensus 383 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~--e~~~~L~~~------~-~~ 453 (494)
-||++++|+|+.+..+ .+..+-.+.++. .+.|+|+++||+|.++.+ ....++.+. + ..
T Consensus 78 vtDIaILVVa~dDGv~--------pQTiEAI~hak~-----a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~ 144 (509)
T COG0532 78 VTDIAILVVAADDGVM--------PQTIEAINHAKA-----AGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGD 144 (509)
T ss_pred cccEEEEEEEccCCcc--------hhHHHHHHHHHH-----CCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCc
Confidence 6899999999998543 122222233332 379999999999998653 333444432 1 34
Q ss_pred CCEEEEEcccCCCHHHHHHHHHHHh
Q 011082 454 VPIYPVCAVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 454 ~~ii~ISA~~g~gI~~L~~~I~~~l 478 (494)
..++++||++|+|+++|++.|.-+.
T Consensus 145 v~~VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 145 VIFVPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred eEEEEeeccCCCCHHHHHHHHHHHH
Confidence 6799999999999999999886543
No 263
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=6e-11 Score=107.34 Aligned_cols=153 Identities=22% Similarity=0.313 Sum_probs=107.7
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
+...++.++|..|||||||++.|-..+.. ....|++|++-.+.+.+..|+..|.-|... -...+..++..
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~---qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~q-------Arr~wkdyf~~ 87 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLG---QHVPTLHPTSEELSIGGMTFTTFDLGGHLQ-------ARRVWKDYFPQ 87 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHcccccc---ccCCCcCCChHHheecCceEEEEccccHHH-------HHHHHHHHHhh
Confidence 34457899999999999999999775332 234589999999999999999999999754 33456778889
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhh--hcccCCCCEEEEEeCCCcCChHHHHHHHH------HHc----
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHH--QEGLSDRPSLVVANKIDEDGAEEVYEELE------RRV---- 451 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~--~~~l~~~P~IlVlNKiDl~~~~e~~~~L~------~~~---- 451 (494)
+|.+++++|+.+. +.+.+...++... ..++.+.|.+++.||+|.+.+.. .++++ +..
T Consensus 88 v~~iv~lvda~d~----------er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~s-e~~l~~~l~l~~~t~~~~ 156 (193)
T KOG0077|consen 88 VDAIVYLVDAYDQ----------ERFAESKKELDALLSDESLATVPFLILGNKIDIPYAAS-EDELRFHLGLSNFTTGKG 156 (193)
T ss_pred hceeEeeeehhhH----------HHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCccc-HHHHHHHHHHHHHhcccc
Confidence 9999999999872 2233333333322 24567899999999999986421 11111 111
Q ss_pred ---------CCCCEEEEEcccCCCHHHHHHHHHHH
Q 011082 452 ---------QGVPIYPVCAVLEEGVPELKVGLRML 477 (494)
Q Consensus 452 ---------~~~~ii~ISA~~g~gI~~L~~~I~~~ 477 (494)
....++.||...+.|..+-+.++..+
T Consensus 157 ~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 157 KVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred cccccCCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence 01357889998888877766666554
No 264
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.18 E-value=1.6e-10 Score=123.38 Aligned_cols=150 Identities=19% Similarity=0.220 Sum_probs=94.1
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCC-------------------------ccc------ccceeecceeeEEeecCcce
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPA-------------------------VGH------YSFTTLRPNLGNMNFDDIQI 355 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~-------------------------i~~------~~ftTl~p~~g~v~~~~~~~ 355 (494)
-.|+++|..++|||||+.+|+...-. +.+ ....|++.....+..++..+
T Consensus 8 ~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i 87 (447)
T PLN00043 8 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYC 87 (447)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCEEE
Confidence 47999999999999999888532100 001 12345665555566667889
Q ss_pred EEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCC-CEEEEEeC
Q 011082 356 TVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDR-PSLVVANK 434 (494)
Q Consensus 356 ~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~-P~IlVlNK 434 (494)
.++||||+.+ +.......+..+|..|+|+|+...... .+.....+....+..+.. ... +.|+++||
T Consensus 88 ~liDtPGh~d-------f~~~~~~g~~~aD~aIlVVda~~G~~e-~g~~~~~qT~eh~~~~~~-----~gi~~iIV~vNK 154 (447)
T PLN00043 88 TVIDAPGHRD-------FIKNMITGTSQADCAVLIIDSTTGGFE-AGISKDGQTREHALLAFT-----LGVKQMICCCNK 154 (447)
T ss_pred EEEECCCHHH-------HHHHHHhhhhhccEEEEEEEcccCcee-cccCCCchHHHHHHHHHH-----cCCCcEEEEEEc
Confidence 9999999865 444556677889999999999863100 001111233333222221 245 46778899
Q ss_pred CCcCCh-------HHHHHHHHHHc-------CCCCEEEEEcccCCCHHH
Q 011082 435 IDEDGA-------EEVYEELERRV-------QGVPIYPVCAVLEEGVPE 469 (494)
Q Consensus 435 iDl~~~-------~e~~~~L~~~~-------~~~~ii~ISA~~g~gI~~ 469 (494)
+|+... +++.++++..+ ...+++++||++|+|+.+
T Consensus 155 mD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 155 MDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred ccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 998621 12344444433 136799999999999853
No 265
>PRK12740 elongation factor G; Reviewed
Probab=99.18 E-value=3.6e-10 Score=126.76 Aligned_cols=108 Identities=22% Similarity=0.261 Sum_probs=74.3
Q ss_pred eCCCCCcHHHHHHHHHcCCC---Cc---------cc------ccceeecceeeEEeecCcceEEecCCCccCCccccccc
Q 011082 312 VGMPSAGKSTLLGAISRAKP---AV---------GH------YSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGL 373 (494)
Q Consensus 312 VG~~nAGKSTLLn~Lt~~~~---~i---------~~------~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L 373 (494)
||.+|+|||||+++|....- .. .+ ....|+......+.+.+..+.++||||..+ +
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~-------~ 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVD-------F 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHH-------H
Confidence 69999999999999943211 11 11 123455555567778889999999999864 3
Q ss_pred hhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCC
Q 011082 374 GHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDG 439 (494)
Q Consensus 374 ~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~ 439 (494)
.......+..+|++++|+|++.. .. .+...++..+.. .+.|.++|+||+|+..
T Consensus 74 ~~~~~~~l~~aD~vllvvd~~~~-------~~-~~~~~~~~~~~~-----~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 74 TGEVERALRVLDGAVVVVCAVGG-------VE-PQTETVWRQAEK-----YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCC-------cC-HHHHHHHHHHHH-----cCCCEEEEEECCCCCC
Confidence 34456678899999999998863 11 222333333322 2689999999999874
No 266
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.18 E-value=2e-10 Score=116.64 Aligned_cols=101 Identities=20% Similarity=0.229 Sum_probs=64.7
Q ss_pred CcceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEE
Q 011082 352 DIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 431 (494)
Q Consensus 352 ~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlV 431 (494)
+..++|+||+|... .-...++.+|.++++.+... ...++... ..+..+|.++|
T Consensus 126 g~D~viidT~G~~~----------~e~~i~~~aD~i~vv~~~~~----------~~el~~~~-------~~l~~~~~ivv 178 (300)
T TIGR00750 126 GYDVIIVETVGVGQ----------SEVDIANMADTFVVVTIPGT----------GDDLQGIK-------AGLMEIADIYV 178 (300)
T ss_pred CCCEEEEeCCCCch----------hhhHHHHhhceEEEEecCCc----------cHHHHHHH-------HHHhhhccEEE
Confidence 46789999998642 11234666788777754321 22222222 23357899999
Q ss_pred EeCCCcCChHHHH---H----HHHHHc-----CCCCEEEEEcccCCCHHHHHHHHHHHhc
Q 011082 432 ANKIDEDGAEEVY---E----ELERRV-----QGVPIYPVCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 432 lNKiDl~~~~e~~---~----~L~~~~-----~~~~ii~ISA~~g~gI~~L~~~I~~~l~ 479 (494)
+||+|+....... . .+.... ...++++|||++++|+++|+++|.+.+.
T Consensus 179 ~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 179 VNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred EEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 9999998654211 0 112111 1236999999999999999999988754
No 267
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.18 E-value=8.7e-11 Score=101.70 Aligned_cols=140 Identities=24% Similarity=0.279 Sum_probs=95.8
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhce
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 386 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ 386 (494)
.++++||..|||||||.++|-|... +.-....+.+++. ..+||||.+- ++..+-++++-....+|+
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~---------lykKTQAve~~d~--~~IDTPGEy~---~~~~~Y~aL~tt~~dadv 67 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDT---------LYKKTQAVEFNDK--GDIDTPGEYF---EHPRWYHALITTLQDADV 67 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchh---------hhcccceeeccCc--cccCCchhhh---hhhHHHHHHHHHhhccce
Confidence 4789999999999999999998732 2233344555442 3579999753 223344556667788999
Q ss_pred eeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHH---cCCCCEEEEEccc
Q 011082 387 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERR---VQGVPIYPVCAVL 463 (494)
Q Consensus 387 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~---~~~~~ii~ISA~~ 463 (494)
+++|-.+.++.. .-|- .+ ..+..+|+|-|++|+|+.+... .+..++. ....+||.+|+++
T Consensus 68 i~~v~~and~~s----~f~p-----~f-------~~~~~k~vIgvVTK~DLaed~d-I~~~~~~L~eaGa~~IF~~s~~d 130 (148)
T COG4917 68 IIYVHAANDPES----RFPP-----GF-------LDIGVKKVIGVVTKADLAEDAD-ISLVKRWLREAGAEPIFETSAVD 130 (148)
T ss_pred eeeeecccCccc----cCCc-----cc-------ccccccceEEEEecccccchHh-HHHHHHHHHHcCCcceEEEeccC
Confidence 999998876321 0110 00 1234678999999999996433 2222222 2456899999999
Q ss_pred CCCHHHHHHHHHHH
Q 011082 464 EEGVPELKVGLRML 477 (494)
Q Consensus 464 g~gI~~L~~~I~~~ 477 (494)
..|+++|++.|...
T Consensus 131 ~~gv~~l~~~L~~~ 144 (148)
T COG4917 131 NQGVEELVDYLASL 144 (148)
T ss_pred cccHHHHHHHHHhh
Confidence 99999999998753
No 268
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=7.6e-11 Score=105.77 Aligned_cols=153 Identities=19% Similarity=0.245 Sum_probs=101.6
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceee--cceeeEEeecC-----------cceEEecCCCccCCccccccch
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTL--RPNLGNMNFDD-----------IQITVADIPGLIKGAHENRGLG 374 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl--~p~~g~v~~~~-----------~~~~l~DtPGli~~a~~~~~L~ 374 (494)
+...+|.+|+||||+|...+..+... .-.+|+ +.....+.++. ..+.+|||.|..+..+ |.
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD~~F~~--qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRS----LT 84 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTDGKFNT--QFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRS----LT 84 (219)
T ss_pred HHHhhccCCCCceEEEEEecCCcccc--eeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHH----HH
Confidence 34567999999999999888653321 111222 22222333321 3579999999976332 22
Q ss_pred hhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCC-EEEEEeCCCcCChHH----HHHHHHH
Q 011082 375 HAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP-SLVVANKIDEDGAEE----VYEELER 449 (494)
Q Consensus 375 ~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P-~IlVlNKiDl~~~~e----~~~~L~~ 449 (494)
.+ .++.|-.+|+++|++. ..++-..+.|+.+|...+ ....| +|++.||+|+.+... ...+|.+
T Consensus 85 TA---FfRDAMGFlLiFDlT~-------eqSFLnvrnWlSQL~~hA--YcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~ 152 (219)
T KOG0081|consen 85 TA---FFRDAMGFLLIFDLTS-------EQSFLNVRNWLSQLQTHA--YCENPDIVLCGNKADLEDQRVVSEDQAAALAD 152 (219)
T ss_pred HH---HHHhhccceEEEeccc-------hHHHHHHHHHHHHHHHhh--ccCCCCEEEEcCccchhhhhhhhHHHHHHHHH
Confidence 23 3567788999999987 466777888888876543 22445 455569999987542 3445666
Q ss_pred HcCCCCEEEEEcccCCCHHHHHHHHHHHhc
Q 011082 450 RVQGVPIYPVCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 450 ~~~~~~ii~ISA~~g~gI~~L~~~I~~~l~ 479 (494)
.+ +.|+|++||-+|.|+++-.+.+..++.
T Consensus 153 ky-glPYfETSA~tg~Nv~kave~LldlvM 181 (219)
T KOG0081|consen 153 KY-GLPYFETSACTGTNVEKAVELLLDLVM 181 (219)
T ss_pred Hh-CCCeeeeccccCcCHHHHHHHHHHHHH
Confidence 65 789999999999999886666655543
No 269
>PTZ00099 rab6; Provisional
Probab=99.15 E-value=4.8e-10 Score=105.03 Aligned_cols=119 Identities=13% Similarity=0.101 Sum_probs=83.5
Q ss_pred EEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccC
Q 011082 347 NMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLS 424 (494)
Q Consensus 347 ~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~ 424 (494)
.+.+++ ..+.||||||..... .....+++.||++|+|+|+++ ..+++....++.++.... ..
T Consensus 21 ~~~~~~~~v~l~iwDt~G~e~~~-------~~~~~~~~~ad~~ilv~D~t~-------~~sf~~~~~w~~~i~~~~--~~ 84 (176)
T PTZ00099 21 TLYLDEGPVRLQLWDTAGQERFR-------SLIPSYIRDSAAAIVVYDITN-------RQSFENTTKWIQDILNER--GK 84 (176)
T ss_pred EEEECCEEEEEEEEECCChHHhh-------hccHHHhCCCcEEEEEEECCC-------HHHHHHHHHHHHHHHHhc--CC
Confidence 344444 678999999986522 222345788999999999987 356667766766665432 23
Q ss_pred CCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEEcccCCCHHHHHHHHHHHhcccC
Q 011082 425 DRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 425 ~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
..|+|+|+||+|+.... +....+...+ +..++++||+++.||++++++|.+.+.+.+
T Consensus 85 ~~piilVgNK~DL~~~~~v~~~e~~~~~~~~-~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 85 DVIIALVGNKTDLGDLRKVTYEEGMQKAQEY-NTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred CCeEEEEEECcccccccCCCHHHHHHHHHHc-CCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 67889999999996421 1122223333 456899999999999999999999886543
No 270
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.15 E-value=4.4e-10 Score=115.10 Aligned_cols=102 Identities=14% Similarity=0.181 Sum_probs=67.9
Q ss_pred CcceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEE
Q 011082 352 DIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 431 (494)
Q Consensus 352 ~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlV 431 (494)
+..++++||+|...... .....+|++++|++... ...++.+.... .....|+|
T Consensus 148 g~d~viieT~Gv~qs~~----------~i~~~aD~vlvv~~p~~----------gd~iq~~k~gi-------~E~aDIiV 200 (332)
T PRK09435 148 GYDVILVETVGVGQSET----------AVAGMVDFFLLLQLPGA----------GDELQGIKKGI-------MELADLIV 200 (332)
T ss_pred CCCEEEEECCCCccchh----------HHHHhCCEEEEEecCCc----------hHHHHHHHhhh-------hhhhheEE
Confidence 36789999999864211 23667999999976332 22333322211 23345899
Q ss_pred EeCCCcCChH---HHHHHHHHHcC---------CCCEEEEEcccCCCHHHHHHHHHHHhcc
Q 011082 432 ANKIDEDGAE---EVYEELERRVQ---------GVPIYPVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 432 lNKiDl~~~~---e~~~~L~~~~~---------~~~ii~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
+||+|+.... .....+...+. ..+++++||+++.|+++|++.|.+.+..
T Consensus 201 VNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~ 261 (332)
T PRK09435 201 INKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAA 261 (332)
T ss_pred eehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9999987643 33344444331 1589999999999999999999988653
No 271
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.14 E-value=3.9e-11 Score=104.69 Aligned_cols=152 Identities=16% Similarity=0.208 Sum_probs=107.1
Q ss_pred eeCCCCCcHHHHHHHHHcCCCCccccccee--ecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHHHhhce
Q 011082 311 LVGMPSAGKSTLLGAISRAKPAVGHYSFTT--LRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 386 (494)
Q Consensus 311 LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftT--l~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ 386 (494)
|+|.+++|||.|+-++-.--....++ ..| ++.....+..++ ..+.+|||.|..+..+ -...+++.+|.
T Consensus 2 llgds~~gktcllir~kdgafl~~~f-istvgid~rnkli~~~~~kvklqiwdtagqerfrs-------vt~ayyrda~a 73 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNF-ISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRS-------VTHAYYRDADA 73 (192)
T ss_pred ccccCccCceEEEEEeccCceecCce-eeeeeeccccceeccCCcEEEEEEeeccchHHHhh-------hhHhhhcccce
Confidence 68999999999875543221111111 122 222223444555 5689999999976322 23456889999
Q ss_pred eeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEEEEEcc
Q 011082 387 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCAV 462 (494)
Q Consensus 387 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii~ISA~ 462 (494)
+++++|+.+ ..+++..+.|+.++..|... .....++.||||+.... +.-+.|.+.+ +.|+..+||+
T Consensus 74 llllydian-------kasfdn~~~wlsei~ey~k~--~v~l~llgnk~d~a~er~v~~ddg~kla~~y-~ipfmetsak 143 (192)
T KOG0083|consen 74 LLLLYDIAN-------KASFDNCQAWLSEIHEYAKE--AVALMLLGNKCDLAHERAVKRDDGEKLAEAY-GIPFMETSAK 143 (192)
T ss_pred eeeeeeccc-------chhHHHHHHHHHHHHHHHHh--hHhHhhhccccccchhhccccchHHHHHHHH-CCCceecccc
Confidence 999999997 47899999999999999653 45677888999996432 2234566665 6899999999
Q ss_pred cCCCHHHHHHHHHHHhcc
Q 011082 463 LEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 463 ~g~gI~~L~~~I~~~l~~ 480 (494)
+|-|++.-+-.|.+.+.+
T Consensus 144 tg~nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 144 TGFNVDLAFLAIAEELKK 161 (192)
T ss_pred ccccHhHHHHHHHHHHHH
Confidence 999999888888776654
No 272
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.13 E-value=4.4e-10 Score=116.49 Aligned_cols=161 Identities=20% Similarity=0.253 Sum_probs=114.1
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcCCCC---------------cccccceeecceeeEEeecC-----cceEEecCCCc
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRAKPA---------------VGHYSFTTLRPNLGNMNFDD-----IQITVADIPGL 363 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~~~~---------------i~~~~ftTl~p~~g~v~~~~-----~~~~l~DtPGl 363 (494)
+.+....||-.-..|||||-.+|....-. +....+.|+..+.-.+.|.. +.+.++||||+
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 34556777888899999999998543211 22234567766666655542 67899999999
Q ss_pred cCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh--H
Q 011082 364 IKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--E 441 (494)
Q Consensus 364 i~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~--~ 441 (494)
.+ +....-+.+..|...|+|||++.... .+.+.+-..++. .+.-+|-|+||+||+.+ +
T Consensus 87 VD-------FsYEVSRSLAACEGalLvVDAsQGve----------AQTlAN~YlAle---~~LeIiPViNKIDLP~Adpe 146 (603)
T COG0481 87 VD-------FSYEVSRSLAACEGALLVVDASQGVE----------AQTLANVYLALE---NNLEIIPVLNKIDLPAADPE 146 (603)
T ss_pred cc-------eEEEehhhHhhCCCcEEEEECccchH----------HHHHHHHHHHHH---cCcEEEEeeecccCCCCCHH
Confidence 87 44445678889999999999987422 222322222222 25567888999999865 4
Q ss_pred HHHHHHHHHc--CCCCEEEEEcccCCCHHHHHHHHHHHhcccCCc
Q 011082 442 EVYEELERRV--QGVPIYPVCAVLEEGVPELKVGLRMLVNGEKSE 484 (494)
Q Consensus 442 e~~~~L~~~~--~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~~~ 484 (494)
...+++.+.+ +...++.+||++|.||+++++.|.+.+..-...
T Consensus 147 rvk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~ 191 (603)
T COG0481 147 RVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGD 191 (603)
T ss_pred HHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCCC
Confidence 5667777776 445689999999999999999999998775543
No 273
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.12 E-value=1.9e-10 Score=107.78 Aligned_cols=117 Identities=25% Similarity=0.402 Sum_probs=67.5
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEee---cCcceEEecCCCccCCccccccchhhHHHH---
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNF---DDIQITVADIPGLIKGAHENRGLGHAFLRH--- 380 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~---~~~~~~l~DtPGli~~a~~~~~L~~~fl~~--- 380 (494)
+.|.|+|+.|||||+|+..|+..... ...|.+.+..+ +.+ .+..+.++|+||+.+ +...++..
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~---~T~tS~e~n~~-~~~~~~~~~~~~lvD~PGH~r-------lr~~~~~~~~~ 72 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTV---PTVTSMENNIA-YNVNNSKGKKLRLVDIPGHPR-------LRSKLLDELKY 72 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS------B---SSEEEE-CCGSSTCGTCECEEEETT-HC-------CCHHHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcC---CeeccccCCce-EEeecCCCCEEEEEECCCcHH-------HHHHHHHhhhc
Confidence 47999999999999999999976221 12233444443 223 236899999999976 55556555
Q ss_pred HHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhc-ccCCCCEEEEEeCCCcCCh
Q 011082 381 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQE-GLSDRPSLVVANKIDEDGA 440 (494)
Q Consensus 381 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~-~l~~~P~IlVlNKiDl~~~ 440 (494)
+..+..||||+|.+... ....+..+.+-.+..... .-...|++|+.||.|+..+
T Consensus 73 ~~~~k~IIfvvDSs~~~------~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 73 LSNAKGIIFVVDSSTDQ------KELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp HGGEEEEEEEEETTTHH------HHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred hhhCCEEEEEEeCccch------hhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 78899999999987410 111222222222211111 1235778888899999865
No 274
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.11 E-value=8.4e-11 Score=117.66 Aligned_cols=55 Identities=20% Similarity=0.122 Sum_probs=44.6
Q ss_pred cCCCCEEEEEeCCCcCCh-----HHHHHHHHHHcCCCCEEEEEcccCCCHHHHHHHHHHH
Q 011082 423 LSDRPSLVVANKIDEDGA-----EEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRML 477 (494)
Q Consensus 423 l~~~P~IlVlNKiDl~~~-----~e~~~~L~~~~~~~~ii~ISA~~g~gI~~L~~~I~~~ 477 (494)
+...+.++|+||+|+... +...+.+++..+..++|++||++++|+++|.++|...
T Consensus 228 ~f~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 228 MFAAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hhhcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 346788999999999752 2344556666688899999999999999999999764
No 275
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=5.1e-10 Score=105.48 Aligned_cols=155 Identities=22% Similarity=0.342 Sum_probs=102.1
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHH---h
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIE---R 383 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~---~ 383 (494)
..|.|+|+.+||||+|+-.|.... -.-.+|+..|+.+.+.+++....++|.||..+ +...+++.+. .
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs---~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~r-------lR~kl~e~~~~~~~ 108 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGS---HRGTVTSIEPNEATYRLGSENVTLVDLPGHSR-------LRRKLLEYLKHNYS 108 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCC---ccCeeeeeccceeeEeecCcceEEEeCCCcHH-------HHHHHHHHcccccc
Confidence 479999999999999998887541 12245678899999999998899999999976 5555655554 7
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCC-CCEEEEEeCCCcCChH---HHH----HHHHHHc----
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSD-RPSLVVANKIDEDGAE---EVY----EELERRV---- 451 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~-~P~IlVlNKiDl~~~~---e~~----~~L~~~~---- 451 (494)
+..++||+|..... ....+..+++-.+..-.....+ .|++++.||.|+..+. .+. ++|....
T Consensus 109 akaiVFVVDSa~f~------k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRs 182 (238)
T KOG0090|consen 109 AKAIVFVVDSATFL------KNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRS 182 (238)
T ss_pred ceeEEEEEeccccc------hhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 89999999987632 1222333333222222222334 5566666999997542 111 1111110
Q ss_pred ------------------------------CCCCEEEEEcccCCCHHHHHHHHHHHh
Q 011082 452 ------------------------------QGVPIYPVCAVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 452 ------------------------------~~~~ii~ISA~~g~gI~~L~~~I~~~l 478 (494)
....+.+.|++++ +++++.+||.+.+
T Consensus 183 a~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 183 ALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred hhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 0124677788777 7999999998753
No 276
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.09 E-value=7.7e-10 Score=106.71 Aligned_cols=166 Identities=20% Similarity=0.199 Sum_probs=99.9
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCccc--ccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHH----
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGH--YSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHI---- 381 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~--~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i---- 381 (494)
+|.|+|.+||||||++|.|++....... ....|..+......+++..+.++||||+.+.............+.+
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~ 81 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCS 81 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhcc
Confidence 5899999999999999999998664332 2335566667777888999999999999764433222222233322
Q ss_pred HhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHh-hhcccCCCCEEEEEeCCCcCChHH-----------HHHHHHH
Q 011082 382 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEH-HQEGLSDRPSLVVANKIDEDGAEE-----------VYEELER 449 (494)
Q Consensus 382 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~-~~~~l~~~P~IlVlNKiDl~~~~e-----------~~~~L~~ 449 (494)
...+++|+|+.+... ...+ ...+..+.. +.+.+ .+..|||++..|...... .+..|.+
T Consensus 82 ~g~ha~llVi~~~r~--------t~~~-~~~l~~l~~~FG~~~-~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~ 151 (212)
T PF04548_consen 82 PGPHAFLLVIPLGRF--------TEED-REVLELLQEIFGEEI-WKHTIVVFTHADELEDDSLEDYLKKESNEALQELIE 151 (212)
T ss_dssp T-ESEEEEEEETTB---------SHHH-HHHHHHHHHHHCGGG-GGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEecCcc--------hHHH-HHHHHHHHHHccHHH-HhHhhHHhhhccccccccHHHHHhccCchhHhHHhh
Confidence 235899999988741 2222 223333332 33333 467888888887654321 1223333
Q ss_pred HcCCCCEEEEEcc------cCCCHHHHHHHHHHHhcccCCc
Q 011082 450 RVQGVPIYPVCAV------LEEGVPELKVGLRMLVNGEKSE 484 (494)
Q Consensus 450 ~~~~~~ii~ISA~------~g~gI~~L~~~I~~~l~~~~~~ 484 (494)
.+ +..++.++.. ....+.+|++.|.+++.+....
T Consensus 152 ~c-~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~ 191 (212)
T PF04548_consen 152 KC-GGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQ 191 (212)
T ss_dssp HT-TTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hc-CCEEEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCC
Confidence 34 3456666655 2356889999999998876543
No 277
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=5.3e-10 Score=111.03 Aligned_cols=164 Identities=20% Similarity=0.222 Sum_probs=109.8
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCC---------------cccccceee--------cceeeEEeecC------cceEE
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPA---------------VGHYSFTTL--------RPNLGNMNFDD------IQITV 357 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~---------------i~~~~ftTl--------~p~~g~v~~~~------~~~~l 357 (494)
..|++||.-..|||||.++|++.... .++..+.-. ..+.......+ +.+.|
T Consensus 11 vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VSf 90 (415)
T COG5257 11 VNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVSF 90 (415)
T ss_pred eEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEEE
Confidence 47999999999999999999986211 011111000 00000111111 46899
Q ss_pred ecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCc
Q 011082 358 ADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDE 437 (494)
Q Consensus 358 ~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl 437 (494)
+|.||+.- |...+|+-..--|..|+|++++.+.. ..+..+.+..|.-. .-+.+|+|=||+|+
T Consensus 91 VDaPGHe~-------LMATMLsGAAlMDgAlLvIaANEpcP-------QPQT~EHl~AleIi----gik~iiIvQNKIDl 152 (415)
T COG5257 91 VDAPGHET-------LMATMLSGAALMDGALLVIAANEPCP-------QPQTREHLMALEII----GIKNIIIVQNKIDL 152 (415)
T ss_pred eeCCchHH-------HHHHHhcchhhhcceEEEEecCCCCC-------CCchHHHHHHHhhh----ccceEEEEecccce
Confidence 99999854 66666777777799999999987532 22333333444322 24667777799999
Q ss_pred CChHH---HHHHHHHHc-----CCCCEEEEEcccCCCHHHHHHHHHHHhcccCCccccc
Q 011082 438 DGAEE---VYEELERRV-----QGVPIYPVCAVLEEGVPELKVGLRMLVNGEKSERLSL 488 (494)
Q Consensus 438 ~~~~e---~~~~L~~~~-----~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~~~~~~~ 488 (494)
.+.++ .++++++.. .+.++|+|||..+.||+.|++.|.+.+..-.++....
T Consensus 153 V~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~~~ 211 (415)
T COG5257 153 VSRERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLDKP 211 (415)
T ss_pred ecHHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCCCC
Confidence 98764 455666655 4679999999999999999999999998766654433
No 278
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.07 E-value=3.8e-10 Score=99.57 Aligned_cols=152 Identities=26% Similarity=0.299 Sum_probs=104.0
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC-cceEEecCCCccCCccccccchhhHHHHHHhhce
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD-IQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 386 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ 386 (494)
+++++|..||||||||+.|.+.++.- ...|-...+..+.+++ ..+.+||+.|.- ++..-|-.++++.|.
T Consensus 19 rilllGldnAGKTT~LKqL~sED~~h---ltpT~GFn~k~v~~~g~f~LnvwDiGGqr-------~IRpyWsNYyenvd~ 88 (185)
T KOG0074|consen 19 RILLLGLDNAGKTTFLKQLKSEDPRH---LTPTNGFNTKKVEYDGTFHLNVWDIGGQR-------GIRPYWSNYYENVDG 88 (185)
T ss_pred EEEEEecCCCcchhHHHHHccCChhh---ccccCCcceEEEeecCcEEEEEEecCCcc-------ccchhhhhhhhccce
Confidence 68999999999999999999886531 1112223344566666 889999998873 355567788999999
Q ss_pred eeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhh--cccCCCCEEEEEeCCCcCChHHHHHHHHHHc-------CCCCEE
Q 011082 387 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQ--EGLSDRPSLVVANKIDEDGAEEVYEELERRV-------QGVPIY 457 (494)
Q Consensus 387 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~--~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~-------~~~~ii 457 (494)
++||+|.++. ..++ ++-.++..+. ..+...|+++..||-|+..+....+ +...+ ..+.+-
T Consensus 89 lIyVIDS~D~-------krfe---E~~~el~ELleeeKl~~vpvlIfankQdlltaa~~ee-ia~klnl~~lrdRswhIq 157 (185)
T KOG0074|consen 89 LIYVIDSTDE-------KRFE---EISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEE-IALKLNLAGLRDRSWHIQ 157 (185)
T ss_pred EEEEEeCCch-------HhHH---HHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHH-HHHhcchhhhhhceEEee
Confidence 9999997661 2233 3333333222 2356789999999999876532211 11111 235677
Q ss_pred EEEcccCCCHHHHHHHHHHHhcc
Q 011082 458 PVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 458 ~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
.+||.+++|+.+-.+++....+.
T Consensus 158 ~csals~eg~~dg~~wv~sn~~~ 180 (185)
T KOG0074|consen 158 ECSALSLEGSTDGSDWVQSNPET 180 (185)
T ss_pred eCccccccCccCcchhhhcCCCC
Confidence 89999999999988888766554
No 279
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=8.5e-10 Score=114.08 Aligned_cols=153 Identities=20% Similarity=0.245 Sum_probs=113.7
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCC---CcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKP---AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~---~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
.|+..|.---|||||+.++++... .......+|.+........++..+.++|.||+.+ +...++..+...
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~-------~i~~miag~~~~ 74 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPD-------FISNLLAGLGGI 74 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHH-------HHHHHHhhhcCC
Confidence 477888889999999999998743 3345677888888888888889999999999876 556667777788
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHH-----cCCCCEEEE
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERR-----VQGVPIYPV 459 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~-----~~~~~ii~I 459 (494)
|..++|||..+..+ .+..+.+.-|..+ ..+..++|+||+|..+...+.+.+++. +...++|.+
T Consensus 75 d~alLvV~~deGl~--------~qtgEhL~iLdll----gi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~ 142 (447)
T COG3276 75 DYALLVVAADEGLM--------AQTGEHLLILDLL----GIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKT 142 (447)
T ss_pred ceEEEEEeCccCcc--------hhhHHHHHHHHhc----CCCceEEEEeccccccHHHHHHHHHHHHhhccccccccccc
Confidence 99999999876432 2233333333322 234459999999999764333333222 246778999
Q ss_pred EcccCCCHHHHHHHHHHHhc
Q 011082 460 CAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 460 SA~~g~gI~~L~~~I~~~l~ 479 (494)
|+.+|+||++|.+.|.++..
T Consensus 143 s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 143 SAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred ccccCCCHHHHHHHHHHhhh
Confidence 99999999999999999985
No 280
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.07 E-value=7.9e-10 Score=111.48 Aligned_cols=120 Identities=23% Similarity=0.284 Sum_probs=78.3
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHH---
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIE--- 382 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~--- 382 (494)
.+|+|+|.+|+||||++|+|++.+. .++.+..+|..++......++..+.++||||+.+....+. ..+..++
T Consensus 39 ~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e----~~~~~ik~~l 114 (313)
T TIGR00991 39 LTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYIND----QAVNIIKRFL 114 (313)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHH----HHHHHHHHHh
Confidence 4799999999999999999999865 3455555666666655666789999999999987533221 2222222
Q ss_pred ---hhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhh-hcccCCCCEEEEEeCCCcC
Q 011082 383 ---RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHH-QEGLSDRPSLVVANKIDED 438 (494)
Q Consensus 383 ---~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~-~~~l~~~P~IlVlNKiDl~ 438 (494)
..|++|+|..+... ........++..+... ...+ ..+.|+|+|+.|..
T Consensus 115 ~~~g~DvVLyV~rLD~~-------R~~~~DkqlLk~Iqe~FG~~i-w~~~IVVfTh~d~~ 166 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAY-------RVDTLDGQVIRAITDSFGKDI-WRKSLVVLTHAQFS 166 (313)
T ss_pred hcCCCCEEEEEeccCcc-------cCCHHHHHHHHHHHHHhhhhh-hccEEEEEECCccC
Confidence 47899999665431 0111112233333322 2222 46899999999965
No 281
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=1.4e-09 Score=95.89 Aligned_cols=156 Identities=15% Similarity=0.173 Sum_probs=102.2
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCCccccccee-ecceeeEEeecC--cceEEecCCCccCCccccccchhhHHHHH
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTT-LRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHI 381 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftT-l~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i 381 (494)
-+.+..|||.-|+|||.||..++..+ ..++.|.|- +..-...+.+.+ ..+.+|||.|..+ +..-..+++
T Consensus 10 yifkyiiigdmgvgkscllhqftekk-fmadcphtigvefgtriievsgqkiklqiwdtagqer-------fravtrsyy 81 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKK-FMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER-------FRAVTRSYY 81 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHH-HhhcCCcccceecceeEEEecCcEEEEEEeecccHHH-------HHHHHHHHh
Confidence 34567899999999999999998753 234443321 112233455555 5679999999865 222234567
Q ss_pred HhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEE
Q 011082 382 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIY 457 (494)
Q Consensus 382 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii 457 (494)
+.+...++|+|++. +.....+..|+..-..+. -.+..++++.||.|+.... +..+++.+. .+..++
T Consensus 82 rgaagalmvyditr-------rstynhlsswl~dar~lt--npnt~i~lignkadle~qrdv~yeeak~faee-ngl~fl 151 (215)
T KOG0097|consen 82 RGAAGALMVYDITR-------RSTYNHLSSWLTDARNLT--NPNTVIFLIGNKADLESQRDVTYEEAKEFAEE-NGLMFL 151 (215)
T ss_pred ccccceeEEEEehh-------hhhhhhHHHHHhhhhccC--CCceEEEEecchhhhhhcccCcHHHHHHHHhh-cCeEEE
Confidence 78888999999987 455666776665543321 1134455556999998653 223334443 367889
Q ss_pred EEEcccCCCHHHHHHHHHHHh
Q 011082 458 PVCAVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 458 ~ISA~~g~gI~~L~~~I~~~l 478 (494)
.+||++|+++++-+-...+.+
T Consensus 152 e~saktg~nvedafle~akki 172 (215)
T KOG0097|consen 152 EASAKTGQNVEDAFLETAKKI 172 (215)
T ss_pred EecccccCcHHHHHHHHHHHH
Confidence 999999999998665544443
No 282
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.04 E-value=2.8e-09 Score=106.95 Aligned_cols=122 Identities=20% Similarity=0.343 Sum_probs=73.0
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCccc---------ccce-eecceeeEEeecC--cceEEecCCCccCCcccccc---
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGH---------YSFT-TLRPNLGNMNFDD--IQITVADIPGLIKGAHENRG--- 372 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~---------~~ft-Tl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~--- 372 (494)
+|+++|.+|+|||||+|+|.+....... +..| ++......+..++ ..+.++||||+.+.......
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~ 85 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKP 85 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHH
Confidence 6899999999999999999987543321 2222 2333344445555 46899999999764321100
Q ss_pred ----chhhHHHHH-------H-------hhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeC
Q 011082 373 ----LGHAFLRHI-------E-------RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANK 434 (494)
Q Consensus 373 ----L~~~fl~~i-------~-------~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNK 434 (494)
+..+|..++ + ++|+++++++.+.. +..+++ ..++..+.. ..|+|+|+||
T Consensus 86 i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-----~l~~~D--~~~lk~l~~------~v~vi~VinK 152 (276)
T cd01850 86 IVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-----GLKPLD--IEFMKRLSK------RVNIIPVIAK 152 (276)
T ss_pred HHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-----CCCHHH--HHHHHHHhc------cCCEEEEEEC
Confidence 001111111 1 36788999987641 011221 333344421 5799999999
Q ss_pred CCcCChHH
Q 011082 435 IDEDGAEE 442 (494)
Q Consensus 435 iDl~~~~e 442 (494)
+|+...++
T Consensus 153 ~D~l~~~e 160 (276)
T cd01850 153 ADTLTPEE 160 (276)
T ss_pred CCcCCHHH
Confidence 99977543
No 283
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.03 E-value=2.8e-09 Score=103.97 Aligned_cols=120 Identities=22% Similarity=0.280 Sum_probs=71.0
Q ss_pred ceEEecCCCccCCccccccchhhHHHHHHhh--ceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEE
Q 011082 354 QITVADIPGLIKGAHENRGLGHAFLRHIERT--KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 431 (494)
Q Consensus 354 ~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a--d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlV 431 (494)
..+++||||.|+-.... .-+.-....+..+ -++++|+|.... ..|..-...++-....+.. ...|.|+|
T Consensus 117 ~~~liDTPGQIE~FtWS-AsGsIIte~lass~ptvv~YvvDt~rs------~~p~tFMSNMlYAcSilyk--tklp~ivv 187 (366)
T KOG1532|consen 117 DYVLIDTPGQIEAFTWS-ASGSIITETLASSFPTVVVYVVDTPRS------TSPTTFMSNMLYACSILYK--TKLPFIVV 187 (366)
T ss_pred CEEEEcCCCceEEEEec-CCccchHhhHhhcCCeEEEEEecCCcC------CCchhHHHHHHHHHHHHHh--ccCCeEEE
Confidence 57999999999832211 1122222333322 478999997652 1222211111111111111 36899999
Q ss_pred EeCCCcCChHH----------HHHHH-------------------HHHcCCCCEEEEEcccCCCHHHHHHHHHHHhcccC
Q 011082 432 ANKIDEDGAEE----------VYEEL-------------------ERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 432 lNKiDl~~~~e----------~~~~L-------------------~~~~~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
+||+|+.+..- ..+.+ .+.+.+...+-|||.+|.|.++++..+.+.+++..
T Consensus 188 fNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~ 267 (366)
T KOG1532|consen 188 FNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYE 267 (366)
T ss_pred EecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHH
Confidence 99999987531 11111 12224568999999999999999999988876643
No 284
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.02 E-value=1.7e-09 Score=106.29 Aligned_cols=116 Identities=22% Similarity=0.269 Sum_probs=61.1
Q ss_pred ceEEecCCCccCCccccccchhhHHHHHH--hhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEE
Q 011082 354 QITVADIPGLIKGAHENRGLGHAFLRHIE--RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 431 (494)
Q Consensus 354 ~~~l~DtPGli~~a~~~~~L~~~fl~~i~--~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlV 431 (494)
.+.++||||+++--... ..+..+.+.+. ..-++++++|.... .++..-+..++..+..... .+.|.|.|
T Consensus 92 ~y~l~DtPGQiElf~~~-~~~~~i~~~L~~~~~~~~v~LvD~~~~------~~~~~f~s~~L~s~s~~~~--~~lP~vnv 162 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHS-DSGRKIVERLQKNGRLVVVFLVDSSFC------SDPSKFVSSLLLSLSIMLR--LELPHVNV 162 (238)
T ss_dssp SEEEEE--SSHHHHHHS-HHHHHHHHTSSS----EEEEEE-GGG-------SSHHHHHHHHHHHHHHHHH--HTSEEEEE
T ss_pred cEEEEeCCCCEEEEEec-hhHHHHHHHHhhhcceEEEEEEecccc------cChhhHHHHHHHHHHHHhh--CCCCEEEe
Confidence 58999999998821110 11122222222 23478999998762 1344444443333322211 26899999
Q ss_pred EeCCCcCChH-----------------------HHHHHHHHHc---CCC-CEEEEEcccCCCHHHHHHHHHHHh
Q 011082 432 ANKIDEDGAE-----------------------EVYEELERRV---QGV-PIYPVCAVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 432 lNKiDl~~~~-----------------------e~~~~L~~~~---~~~-~ii~ISA~~g~gI~~L~~~I~~~l 478 (494)
+||+|+.... ...+.+.+.+ ... .++++|+.+++|+++|+..|.+.+
T Consensus 163 lsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 163 LSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp E--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred eeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 9999998721 1112233333 223 799999999999999999998765
No 285
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=8.6e-10 Score=97.66 Aligned_cols=153 Identities=25% Similarity=0.277 Sum_probs=100.6
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHhhcee
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 387 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~l 387 (494)
++.++|..||||||++-.+---+. +... .|.......+.+.+..+.+||.-|.-. +..-|..+++++|.+
T Consensus 20 rililgldGaGkttIlyrlqvgev-vttk--Ptigfnve~v~yKNLk~~vwdLggqtS-------irPyWRcYy~dt~av 89 (182)
T KOG0072|consen 20 RILILGLDGAGKTTILYRLQVGEV-VTTK--PTIGFNVETVPYKNLKFQVWDLGGQTS-------IRPYWRCYYADTDAV 89 (182)
T ss_pred EEEEeeccCCCeeEEEEEcccCcc-cccC--CCCCcCccccccccccceeeEccCccc-------ccHHHHHHhcccceE
Confidence 578899999999999776642211 1111 122334456777888999999988755 334566788999999
Q ss_pred eEEEecCCCCCCCCCCCCHHHHHH-HHHHHHhhhcccCCCCEEEEEeCCCcCChH---HHHH-----HHHHHcCCCCEEE
Q 011082 388 AYVVDLASGLDGRKGIKPWKQLRD-LIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYE-----ELERRVQGVPIYP 458 (494)
Q Consensus 388 l~VvD~s~~~~~~~~~~~~~~~~~-l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~---e~~~-----~L~~~~~~~~ii~ 458 (494)
+||||.++. +....... +...|. .+.|.+...++++||.|..... +... .|++. .+.+|.
T Consensus 90 IyVVDssd~-------dris~a~~el~~mL~--E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r--~~~Iv~ 158 (182)
T KOG0072|consen 90 IYVVDSSDR-------DRISIAGVELYSMLQ--EEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDR--IWQIVK 158 (182)
T ss_pred EEEEeccch-------hhhhhhHHHHHHHhc--cHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhh--eeEEEe
Confidence 999999873 22211111 111111 1345565667777999987643 3222 22222 368999
Q ss_pred EEcccCCCHHHHHHHHHHHhccc
Q 011082 459 VCAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 459 ISA~~g~gI~~L~~~I~~~l~~~ 481 (494)
.||.+|+|++...+|+.+-+.+.
T Consensus 159 tSA~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 159 TSAVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred eccccccCCcHHHHHHHHHHhcc
Confidence 99999999999999999887653
No 286
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.00 E-value=2.9e-10 Score=111.14 Aligned_cols=100 Identities=17% Similarity=0.301 Sum_probs=62.9
Q ss_pred cceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE
Q 011082 353 IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 432 (494)
Q Consensus 353 ~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl 432 (494)
+.++++.|+|... .-.....-+|.+++|+-.... +..+..+. ++...+.|+|+
T Consensus 122 ~D~IiiETVGvGQ----------sE~~I~~~aD~~v~v~~Pg~G-------D~iQ~~Ka----------GimEiaDi~vV 174 (266)
T PF03308_consen 122 FDVIIIETVGVGQ----------SEVDIADMADTVVLVLVPGLG-------DEIQAIKA----------GIMEIADIFVV 174 (266)
T ss_dssp -SEEEEEEESSST----------HHHHHHTTSSEEEEEEESSTC-------CCCCTB-T----------THHHH-SEEEE
T ss_pred CCEEEEeCCCCCc----------cHHHHHHhcCeEEEEecCCCc-------cHHHHHhh----------hhhhhccEEEE
Confidence 4567777777643 333445668888888865442 11222222 22234779999
Q ss_pred eCCCcCChHHHHHHHHHHc---C------CCCEEEEEcccCCCHHHHHHHHHHHhc
Q 011082 433 NKIDEDGAEEVYEELERRV---Q------GVPIYPVCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 433 NKiDl~~~~e~~~~L~~~~---~------~~~ii~ISA~~g~gI~~L~~~I~~~l~ 479 (494)
||+|...++....+++..+ . ..+++.+||.+++||++|++.|.+...
T Consensus 175 NKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 175 NKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp E--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred eCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 9999887776666665544 1 258999999999999999999987543
No 287
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=4.9e-09 Score=104.91 Aligned_cols=160 Identities=24% Similarity=0.274 Sum_probs=102.8
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCCC-------cccccceeecceeeEEeec---------CcceEEecCCCccCCcccc
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKPA-------VGHYSFTTLRPNLGNMNFD---------DIQITVADIPGLIKGAHEN 370 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~~-------i~~~~ftTl~p~~g~v~~~---------~~~~~l~DtPGli~~a~~~ 370 (494)
..+|++|.-.+|||||.++|+..... .+.....|+|.-...+... ..++.++|.||.-.
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas----- 82 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS----- 82 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH-----
Confidence 47899999999999999999754211 1112233444322222211 14679999999753
Q ss_pred ccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH---HHH---
Q 011082 371 RGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVY--- 444 (494)
Q Consensus 371 ~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~---e~~--- 444 (494)
|....+....-.|+.++|+|+.... .+......++.++ ..+..|+|+||+|+.... ..+
T Consensus 83 --LIRtiiggaqiiDlm~lviDv~kG~------QtQtAEcLiig~~-------~c~klvvvinkid~lpE~qr~ski~k~ 147 (522)
T KOG0461|consen 83 --LIRTIIGGAQIIDLMILVIDVQKGK------QTQTAECLIIGEL-------LCKKLVVVINKIDVLPENQRASKIEKS 147 (522)
T ss_pred --HHHHHHhhhheeeeeeEEEehhccc------ccccchhhhhhhh-------hccceEEEEeccccccchhhhhHHHHH
Confidence 5555566666779999999998742 2222223333333 356778889999976542 112
Q ss_pred -HHHHHHc------CCCCEEEEEcccC----CCHHHHHHHHHHHhcccCCccc
Q 011082 445 -EELERRV------QGVPIYPVCAVLE----EGVPELKVGLRMLVNGEKSERL 486 (494)
Q Consensus 445 -~~L~~~~------~~~~ii~ISA~~g----~gI~~L~~~I~~~l~~~~~~~~ 486 (494)
..+++-+ .+.|++++||+.| ++|.+|.+.|...+.+-.++..
T Consensus 148 ~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~~ 200 (522)
T KOG0461|consen 148 AKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDEE 200 (522)
T ss_pred HHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCCC
Confidence 2222222 3479999999999 8899999999888776655443
No 288
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.99 E-value=3.8e-09 Score=101.40 Aligned_cols=54 Identities=24% Similarity=0.187 Sum_probs=42.6
Q ss_pred CCCEEEEEeCCCcCCh-----HHHHHHHHHHcCCCCEEEEEcccCCCHHHHHHHHHHHh
Q 011082 425 DRPSLVVANKIDEDGA-----EEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 425 ~~P~IlVlNKiDl~~~-----~e~~~~L~~~~~~~~ii~ISA~~g~gI~~L~~~I~~~l 478 (494)
..|.++|+||+|+.+. .+..+.+++..+..+++++||+++.|++++++++.+..
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 5788999999999753 13334455555668899999999999999999998753
No 289
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.98 E-value=1.1e-09 Score=103.31 Aligned_cols=155 Identities=21% Similarity=0.246 Sum_probs=114.4
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeec-C--cceEEecCCCccCCccccccchhhHHHHHHhh
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD-D--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 384 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~-~--~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~a 384 (494)
++.|||..++|||.||-..+.. .....|..|-.+.....+.++ + ..+.+|||.|..+... |. . + .+..+
T Consensus 6 K~VvVGDga~GKT~ll~~~t~~-~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDr----lR-p-l-sY~~t 77 (198)
T KOG0393|consen 6 KCVVVGDGAVGKTCLLISYTTN-AFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDR----LR-P-L-SYPQT 77 (198)
T ss_pred EEEEECCCCcCceEEEEEeccC-cCcccccCeEEccceEEEEecCCCEEEEeeeecCCCccccc----cc-c-c-CCCCC
Confidence 6899999999999999888765 445667666667778888885 6 5679999999977322 11 1 1 45678
Q ss_pred ceeeEEEecCCCCCCCCCCCCHHH-HHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHH----------------HHH
Q 011082 385 KVLAYVVDLASGLDGRKGIKPWKQ-LRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVY----------------EEL 447 (494)
Q Consensus 385 d~ll~VvD~s~~~~~~~~~~~~~~-~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~----------------~~L 447 (494)
|++|.++++.++ .+++. ...|.-|+..+.+ +.|+|+|.+|.||.+..... ..+
T Consensus 78 dvfl~cfsv~~p-------~S~~nv~~kW~pEi~~~cp---~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~l 147 (198)
T KOG0393|consen 78 DVFLLCFSVVSP-------ESFENVKSKWIPEIKHHCP---NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLEL 147 (198)
T ss_pred CEEEEEEEcCCh-------hhHHHHHhhhhHHHHhhCC---CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHH
Confidence 999999998873 44544 5667778887764 78999999999998533222 233
Q ss_pred HHHcCCCCEEEEEcccCCCHHHHHHHHHHHhcc
Q 011082 448 ERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 448 ~~~~~~~~ii~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
.+......++++||++..|+.++++......-.
T Consensus 148 A~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 148 AKEIGAVKYLECSALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred HHHhCcceeeeehhhhhCCcHHHHHHHHHHHhc
Confidence 344444679999999999999999987766543
No 290
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=2.5e-09 Score=109.91 Aligned_cols=151 Identities=25% Similarity=0.305 Sum_probs=94.8
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCC----C---------------------------CcccccceeecceeeEEeecCcce
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAK----P---------------------------AVGHYSFTTLRPNLGNMNFDDIQI 355 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~----~---------------------------~i~~~~ftTl~p~~g~v~~~~~~~ 355 (494)
-.++++|...+|||||+-+|.-.- . +...+.+-|.+.....+..+-+.+
T Consensus 8 ~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~~ 87 (428)
T COG5256 8 LNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYNF 87 (428)
T ss_pred eEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCceE
Confidence 368999999999999999884220 0 011123456555555555566789
Q ss_pred EEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCC
Q 011082 356 TVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKI 435 (494)
Q Consensus 356 ~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKi 435 (494)
.++|+||+- .+...++.-+..||+.++|+|+...... .+.....+.++... | +..+.-...|+++|||
T Consensus 88 tIiDaPGHr-------dFvknmItGasqAD~aVLVV~a~~~efE-~g~~~~gQtrEH~~-L---a~tlGi~~lIVavNKM 155 (428)
T COG5256 88 TIIDAPGHR-------DFVKNMITGASQADVAVLVVDARDGEFE-AGFGVGGQTREHAF-L---ARTLGIKQLIVAVNKM 155 (428)
T ss_pred EEeeCCchH-------HHHHHhhcchhhccEEEEEEECCCCccc-cccccCCchhHHHH-H---HHhcCCceEEEEEEcc
Confidence 999999953 3555666677889999999999874211 11122233332221 1 1123345677778999
Q ss_pred CcCCh-HHHHHH-------HHHHc----CCCCEEEEEcccCCCHHH
Q 011082 436 DEDGA-EEVYEE-------LERRV----QGVPIYPVCAVLEEGVPE 469 (494)
Q Consensus 436 Dl~~~-~e~~~~-------L~~~~----~~~~ii~ISA~~g~gI~~ 469 (494)
|+.+- ++.+++ |.+.+ .+.++|||||..|+|+.+
T Consensus 156 D~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 156 DLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred cccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 99853 222222 22332 246799999999999864
No 291
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.95 E-value=1.3e-08 Score=97.31 Aligned_cols=78 Identities=19% Similarity=0.162 Sum_probs=53.9
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh-----HHHHHHHHHHcCCCCEEE
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA-----EEVYEELERRVQGVPIYP 458 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~-----~e~~~~L~~~~~~~~ii~ 458 (494)
++.++.|+|+.+.. ... .....+ .....++|+||+|+... +...+.++...+..++++
T Consensus 113 ~~~~i~vvD~~~~~-------~~~--~~~~~q--------i~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~ 175 (199)
T TIGR00101 113 ADLTIFVIDVAAGD-------KIP--RKGGPG--------ITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIF 175 (199)
T ss_pred hCcEEEEEEcchhh-------hhh--hhhHhH--------hhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEE
Confidence 57789999987621 110 000011 13456899999999742 233455666567889999
Q ss_pred EEcccCCCHHHHHHHHHHHh
Q 011082 459 VCAVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 459 ISA~~g~gI~~L~~~I~~~l 478 (494)
+||++|+|+++++++|.+.+
T Consensus 176 ~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 176 TNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred EECCCCCCHHHHHHHHHhhc
Confidence 99999999999999998754
No 292
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.94 E-value=1.2e-08 Score=99.62 Aligned_cols=161 Identities=17% Similarity=0.150 Sum_probs=93.4
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCC-CCcccccceeecceeeEEeecC-cceEEecCCCccCCccccccchhhHHHHHHhhc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAK-PAVGHYSFTTLRPNLGNMNFDD-IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 385 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~-~~i~~~~ftTl~p~~g~v~~~~-~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad 385 (494)
+|.|+|+.+|||||+.+.+.... |.-..+...|.++..-.+...+ ..+.+||.||....... .+....-..++.+.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~--~~~~~~~~if~~v~ 78 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMEN--YFNSQREEIFSNVG 78 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHT--THTCCHHHHHCTES
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccc--cccccHHHHHhccC
Confidence 58899999999999999998763 4445566778888877776554 68999999999763332 11112233457889
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHH-------HHHHHHHc--CC---
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV-------YEELERRV--QG--- 453 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~-------~~~L~~~~--~~--- 453 (494)
++|||+|+.... .......+...+..+..+++ +..+-+++.|+|+...+.. .+.+.+.. .+
T Consensus 79 ~LIyV~D~qs~~----~~~~l~~~~~~i~~l~~~sp---~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~ 151 (232)
T PF04670_consen 79 VLIYVFDAQSDD----YDEDLAYLSDCIEALRQYSP---NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIED 151 (232)
T ss_dssp EEEEEEETT-ST----CHHHHHHHHHHHHHHHHHST---T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TS
T ss_pred EEEEEEEccccc----HHHHHHHHHHHHHHHHHhCC---CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 999999998410 01233444555555555554 5667777899999865422 22222222 12
Q ss_pred CCEEEEEcccCCCHHHHHHHHHHHh
Q 011082 454 VPIYPVCAVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 454 ~~ii~ISA~~g~gI~~L~~~I~~~l 478 (494)
..++.+|-.+ +.|-+-+..|.+.|
T Consensus 152 ~~~~~TSI~D-~Sly~A~S~Ivq~L 175 (232)
T PF04670_consen 152 ITFFLTSIWD-ESLYEAWSKIVQKL 175 (232)
T ss_dssp EEEEEE-TTS-THHHHHHHHHHHTT
T ss_pred eEEEeccCcC-cHHHHHHHHHHHHH
Confidence 5667777665 44555555554443
No 293
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.93 E-value=4.4e-09 Score=96.68 Aligned_cols=67 Identities=24% Similarity=0.325 Sum_probs=42.1
Q ss_pred ceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEe
Q 011082 354 QITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVAN 433 (494)
Q Consensus 354 ~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlN 433 (494)
.+.|+||||+........ ....+.+..+|++|+|+++.... .......+...+.. .....|+|+|
T Consensus 102 ~~~lvDtPG~~~~~~~~~---~~~~~~~~~~d~vi~V~~~~~~~-------~~~~~~~l~~~~~~-----~~~~~i~V~n 166 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHT---EITEEYLPKADVVIFVVDANQDL-------TESDMEFLKQMLDP-----DKSRTIFVLN 166 (168)
T ss_dssp SEEEEEEEEBHSSHTTTS---HHHHHHHSTTEEEEEEEETTSTG-------GGHHHHHHHHHHTT-----TCSSEEEEEE
T ss_pred ceEEEeCCccccchhhhH---HHHHHhhccCCEEEEEeccCccc-------chHHHHHHHHHhcC-----CCCeEEEEEc
Confidence 579999999976433322 34456678999999999988732 22233333333321 2455899999
Q ss_pred CC
Q 011082 434 KI 435 (494)
Q Consensus 434 Ki 435 (494)
|+
T Consensus 167 k~ 168 (168)
T PF00350_consen 167 KA 168 (168)
T ss_dssp -G
T ss_pred CC
Confidence 85
No 294
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.93 E-value=8.8e-09 Score=116.55 Aligned_cols=114 Identities=19% Similarity=0.288 Sum_probs=74.9
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCCc----------ccc------cceeecceeeEEee----cCcceEEecCCCcc
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPAV----------GHY------SFTTLRPNLGNMNF----DDIQITVADIPGLI 364 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i----------~~~------~ftTl~p~~g~v~~----~~~~~~l~DtPGli 364 (494)
.+..|+++|..++|||||+.+|....-.+ .++ ...|+......+.+ .+..+.++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 45589999999999999999996431111 111 12344444333333 24678999999997
Q ss_pred CCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcC
Q 011082 365 KGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDED 438 (494)
Q Consensus 365 ~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~ 438 (494)
+ +.......+..+|++|+|+|+.... ..+.+.++...... ..|.|+++||+|..
T Consensus 99 d-------f~~~~~~~l~~~D~avlVvda~~g~--------~~~t~~~~~~~~~~-----~~~~iv~iNK~D~~ 152 (731)
T PRK07560 99 D-------FGGDVTRAMRAVDGAIVVVDAVEGV--------MPQTETVLRQALRE-----RVKPVLFINKVDRL 152 (731)
T ss_pred C-------hHHHHHHHHHhcCEEEEEEECCCCC--------CccHHHHHHHHHHc-----CCCeEEEEECchhh
Confidence 6 4445567788899999999987632 12233333332221 46889999999976
No 295
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.93 E-value=1.7e-08 Score=90.32 Aligned_cols=163 Identities=20% Similarity=0.238 Sum_probs=116.0
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCc-ccccceeecceeeEEeecC---cceEEecCCCccCCccccccchhhHHHHH
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAV-GHYSFTTLRPNLGNMNFDD---IQITVADIPGLIKGAHENRGLGHAFLRHI 381 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i-~~~~ftTl~p~~g~v~~~~---~~~~l~DtPGli~~a~~~~~L~~~fl~~i 381 (494)
.-+|.++|.-++|||++|..|.-....+ ..+..|--+...+.+.-+. ..+.+.||.|+-.+.. .|.. .++
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~---eLpr---hy~ 82 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQ---ELPR---HYF 82 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchh---hhhH---hHh
Confidence 3478999999999999999987543332 3344444555666666554 5789999999976411 1222 345
Q ss_pred HhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHHc---CCCCEEE
Q 011082 382 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRV---QGVPIYP 458 (494)
Q Consensus 382 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~---~~~~ii~ 458 (494)
.-+|.+++|++..+ .+++..+..+..++..... -...|++++.||+|+.+..+.-....+.. .....+.
T Consensus 83 q~aDafVLVYs~~d-------~eSf~rv~llKk~Idk~Kd-KKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~e 154 (198)
T KOG3883|consen 83 QFADAFVLVYSPMD-------PESFQRVELLKKEIDKHKD-KKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWE 154 (198)
T ss_pred ccCceEEEEecCCC-------HHHHHHHHHHHHHHhhccc-cccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEE
Confidence 67899999999887 4778888888888877532 24689999999999976543322222222 4567899
Q ss_pred EEcccCCCHHHHHHHHHHHhcccC
Q 011082 459 VCAVLEEGVPELKVGLRMLVNGEK 482 (494)
Q Consensus 459 ISA~~g~gI~~L~~~I~~~l~~~~ 482 (494)
|+|.+...+-+.+..+...+.+..
T Consensus 155 Vta~dR~sL~epf~~l~~rl~~pq 178 (198)
T KOG3883|consen 155 VTAMDRPSLYEPFTYLASRLHQPQ 178 (198)
T ss_pred EEeccchhhhhHHHHHHHhccCCc
Confidence 999999999999998887776544
No 296
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.93 E-value=1.4e-08 Score=105.31 Aligned_cols=160 Identities=23% Similarity=0.290 Sum_probs=107.8
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCC------Ccc----------cccceeecceeeEEeecCcceEEecCCCccCCcc
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKP------AVG----------HYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAH 368 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~------~i~----------~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~ 368 (494)
.+..|+||-.-..|||||+..|..+.- .++ .....|+-..--.+.+++..+.++||||+-+
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHAD--- 80 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHAD--- 80 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCC---
Confidence 345788888889999999999976521 111 1123344344445788889999999999876
Q ss_pred ccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh--HHHHHH
Q 011082 369 ENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYEE 446 (494)
Q Consensus 369 ~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~--~e~~~~ 446 (494)
++-..-+.+.-.|.+|+++|+.+. +.| +.+-++..-.. ...+.|+|+||+|.+.+ ++..++
T Consensus 81 ----FGGEVERvl~MVDgvlLlVDA~EG------pMP--QTrFVlkKAl~-----~gL~PIVVvNKiDrp~Arp~~Vvd~ 143 (603)
T COG1217 81 ----FGGEVERVLSMVDGVLLLVDASEG------PMP--QTRFVLKKALA-----LGLKPIVVINKIDRPDARPDEVVDE 143 (603)
T ss_pred ----ccchhhhhhhhcceEEEEEEcccC------CCC--chhhhHHHHHH-----cCCCcEEEEeCCCCCCCCHHHHHHH
Confidence 555556667778999999999873 223 33333332211 14566888999999875 333333
Q ss_pred HHHHc---------CCCCEEEEEcccC----------CCHHHHHHHHHHHhcccCCc
Q 011082 447 LERRV---------QGVPIYPVCAVLE----------EGVPELKVGLRMLVNGEKSE 484 (494)
Q Consensus 447 L~~~~---------~~~~ii~ISA~~g----------~gI~~L~~~I~~~l~~~~~~ 484 (494)
...++ -+.+++..||..| .++.-|++.|.+.+..-...
T Consensus 144 vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~ 200 (603)
T COG1217 144 VFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGD 200 (603)
T ss_pred HHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCC
Confidence 33322 2568999999876 36788999999998775543
No 297
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.91 E-value=1e-08 Score=100.57 Aligned_cols=124 Identities=20% Similarity=0.248 Sum_probs=72.2
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeeccee-----------eEE-------------------------
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNL-----------GNM------------------------- 348 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~-----------g~v------------------------- 348 (494)
..+.|++||++||||||+|++|++........-..|..|+. ..+
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 45689999999999999999999863111111111111110 001
Q ss_pred -------------eecC---cceEEecCCCccCCcccc--cc----chhhHHHHHH-hhceeeEEEecCCCCCCCCCCCC
Q 011082 349 -------------NFDD---IQITVADIPGLIKGAHEN--RG----LGHAFLRHIE-RTKVLAYVVDLASGLDGRKGIKP 405 (494)
Q Consensus 349 -------------~~~~---~~~~l~DtPGli~~a~~~--~~----L~~~fl~~i~-~ad~ll~VvD~s~~~~~~~~~~~ 405 (494)
.+.+ ..++++||||+...+... .. .......+++ ..+++|+|+|+.... ..
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~------~~ 178 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDL------AN 178 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCC------Cc
Confidence 0001 368999999997542211 11 1223455666 346999999986532 11
Q ss_pred HHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh
Q 011082 406 WKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA 440 (494)
Q Consensus 406 ~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~ 440 (494)
. ....+..++.. ..+|.|+|+||+|....
T Consensus 179 ~-d~l~ia~~ld~-----~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 179 S-DALKLAKEVDP-----QGERTIGVITKLDLMDE 207 (240)
T ss_pred h-hHHHHHHHHHH-----cCCcEEEEEECCCCCCc
Confidence 1 22234344432 36899999999998764
No 298
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.90 E-value=1.3e-08 Score=117.32 Aligned_cols=142 Identities=27% Similarity=0.265 Sum_probs=85.0
Q ss_pred cHHHHHHHHHcCCCCcccccceeecceeeEEeecC------------------cceEEecCCCccCCccccccchhhHHH
Q 011082 318 GKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD------------------IQITVADIPGLIKGAHENRGLGHAFLR 379 (494)
Q Consensus 318 GKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~------------------~~~~l~DtPGli~~a~~~~~L~~~fl~ 379 (494)
+|||||.+|.+........-.-|.+.-...+.++. ..+.++||||+.. +......
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~-------F~~lr~~ 545 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEA-------FTSLRKR 545 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHH-------HHHHHHh
Confidence 49999999998866433333333222222222221 2389999999754 1111223
Q ss_pred HHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh-----------------HH
Q 011082 380 HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA-----------------EE 442 (494)
Q Consensus 380 ~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~-----------------~e 442 (494)
....+|++++|+|+++... .+....+..+.. .+.|+|+|+||+|+... +.
T Consensus 546 g~~~aDivlLVVDa~~Gi~--------~qT~e~I~~lk~-----~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~ 612 (1049)
T PRK14845 546 GGSLADLAVLVVDINEGFK--------PQTIEAINILRQ-----YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQH 612 (1049)
T ss_pred hcccCCEEEEEEECcccCC--------HhHHHHHHHHHH-----cCCCEEEEEECCCCccccccccchhhhhhhhhhHHH
Confidence 3456899999999986321 112222223322 26799999999998531 11
Q ss_pred HHHHH-----------HHH-------------cCCCCEEEEEcccCCCHHHHHHHHHHHhc
Q 011082 443 VYEEL-----------ERR-------------VQGVPIYPVCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 443 ~~~~L-----------~~~-------------~~~~~ii~ISA~~g~gI~~L~~~I~~~l~ 479 (494)
...++ .+. ....++|+|||++|+||++|+..|..+.+
T Consensus 613 ~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 613 ALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred HHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 11111 111 12468999999999999999998865433
No 299
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.88 E-value=2.9e-09 Score=107.74 Aligned_cols=162 Identities=20% Similarity=0.202 Sum_probs=104.2
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcc------------eEEecCCCc
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------ITVADIPGL 363 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~------------~~l~DtPGl 363 (494)
-..++|+++.+..+||+|+|||||||||++|++. +.|+.|.+.+.+.. -++.+.|.+
T Consensus 21 l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl-----------~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~ 89 (293)
T COG1131 21 LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGL-----------LKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSL 89 (293)
T ss_pred EeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCC-----------cCCCceEEEEcCEeCccCHHHHHhheEEEccCCCC
Confidence 3578899999999999999999999999999998 66777888777621 355566666
Q ss_pred cCCccccccc--hhhHHH-----HHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----
Q 011082 364 IKGAHENRGL--GHAFLR-----HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA---- 432 (494)
Q Consensus 364 i~~a~~~~~L--~~~fl~-----~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl---- 432 (494)
+........+ ...+.. .-++++-++-.+.+.+..+ .....+..-+++...+..+|...|.++++
T Consensus 90 ~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~-----~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt 164 (293)
T COG1131 90 YPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKAN-----KKVRTLSGGMKQRLSIALALLHDPELLILDEPT 164 (293)
T ss_pred CccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhC-----cchhhcCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 5533321111 111100 0123444555555543111 22333444444444445567899999998
Q ss_pred eCCCcCChHHHHHHHHHHcCCC-CEEEEEcccCCCHHHHHHH
Q 011082 433 NKIDEDGAEEVYEELERRVQGV-PIYPVCAVLEEGVPELKVG 473 (494)
Q Consensus 433 NKiDl~~~~e~~~~L~~~~~~~-~ii~ISA~~g~gI~~L~~~ 473 (494)
|.+|.....++.+.|++..... ..|.+|+|.-+.++.+++.
T Consensus 165 ~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~ 206 (293)
T COG1131 165 SGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDR 206 (293)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCE
Confidence 9999888888888888877433 4677887776666666553
No 300
>PTZ00416 elongation factor 2; Provisional
Probab=98.87 E-value=1.1e-08 Score=117.14 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=76.8
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCCc----------cc------ccceeecceeeEEeec----------CcceEEe
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPAV----------GH------YSFTTLRPNLGNMNFD----------DIQITVA 358 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i----------~~------~~ftTl~p~~g~v~~~----------~~~~~l~ 358 (494)
.+.+|+++|..++|||||+++|....-.+ .+ ....|++...-.+.+. +..+.++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 34489999999999999999997532111 01 1123333332333343 4568999
Q ss_pred cCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcC
Q 011082 359 DIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDED 438 (494)
Q Consensus 359 DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~ 438 (494)
||||+.+ +.......+..+|++|+|+|+.... ..+.+.++..+.. .+.|.|+++||+|+.
T Consensus 98 DtPG~~~-------f~~~~~~al~~~D~ailVvda~~g~--------~~~t~~~~~~~~~-----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVD-------FSSEVTAALRVTDGALVVVDCVEGV--------CVQTETVLRQALQ-----ERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHh-------HHHHHHHHHhcCCeEEEEEECCCCc--------CccHHHHHHHHHH-----cCCCEEEEEEChhhh
Confidence 9999976 4445567788899999999988732 2233445454433 257999999999997
No 301
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.87 E-value=8.7e-09 Score=101.53 Aligned_cols=147 Identities=20% Similarity=0.238 Sum_probs=89.2
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC------------------------
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD------------------------ 352 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~------------------------ 352 (494)
..++|+++.+..++|+|+|||||||||++|++. +.|..|.+.+++
T Consensus 19 ~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~-----------l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~ 87 (258)
T COG1120 19 DDLSFSIPKGEITGILGPNGSGKSTLLKCLAGL-----------LKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSA 87 (258)
T ss_pred ecceEEecCCcEEEEECCCCCCHHHHHHHHhcc-----------CCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCC
Confidence 468899999999999999999999999999996 344444444443
Q ss_pred -cceEEecCCCccCCccccccchhhH-HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEE
Q 011082 353 -IQITVADIPGLIKGAHENRGLGHAF-LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLV 430 (494)
Q Consensus 353 -~~~~l~DtPGli~~a~~~~~L~~~f-l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~Il 430 (494)
..+.+.|.+-+.+..+.+- +. .+ .+..+.++..+..+++.+..+......+..+.+.++. +.+|...|.|+
T Consensus 88 ~~~~tV~d~V~~GR~p~~~~-~~-~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~i-----ArALaQ~~~iL 160 (258)
T COG1120 88 PFGLTVYELVLLGRYPHLGL-FG-RPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLI-----ARALAQETPIL 160 (258)
T ss_pred CCCcEEeehHhhcCCccccc-cc-CCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHH-----HHHHhcCCCEE
Confidence 3456667665554433221 11 11 1122222223333343332211111234444444433 34667889999
Q ss_pred EE----eCCCcCChHHHHHHHHHHc--CCCCEEEEEc
Q 011082 431 VA----NKIDEDGAEEVYEELERRV--QGVPIYPVCA 461 (494)
Q Consensus 431 Vl----NKiDl~~~~e~~~~L~~~~--~~~~ii~ISA 461 (494)
++ |-+|+....++++.+++.. .+..++.+.+
T Consensus 161 LLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlH 197 (258)
T COG1120 161 LLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLH 197 (258)
T ss_pred EeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 88 8999988888888877765 3456666653
No 302
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.86 E-value=1.3e-08 Score=116.77 Aligned_cols=114 Identities=18% Similarity=0.238 Sum_probs=76.6
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCCc----------ccc------cceeecceeeEEeec----------------C
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPAV----------GHY------SFTTLRPNLGNMNFD----------------D 352 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i----------~~~------~ftTl~p~~g~v~~~----------------~ 352 (494)
.+.+|+|+|..++|||||+.+|....-.+ .++ ...|+....-.+.+. +
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 45589999999999999999997532111 111 123333333333332 4
Q ss_pred cceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE
Q 011082 353 IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 432 (494)
Q Consensus 353 ~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl 432 (494)
..+.++||||+.+ +.......+..+|..|+|+|+..... .+.+.++..+.. .+.|.|+++
T Consensus 98 ~~inliDtPGh~d-------F~~e~~~al~~~D~ailVvda~~Gv~--------~~t~~~~~~~~~-----~~~p~i~~i 157 (843)
T PLN00116 98 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVC--------VQTETVLRQALG-----ERIRPVLTV 157 (843)
T ss_pred eEEEEECCCCHHH-------HHHHHHHHHhhcCEEEEEEECCCCCc--------ccHHHHHHHHHH-----CCCCEEEEE
Confidence 6688999999976 44455677888999999999887422 223334444432 268999999
Q ss_pred eCCCcC
Q 011082 433 NKIDED 438 (494)
Q Consensus 433 NKiDl~ 438 (494)
||+|..
T Consensus 158 NK~D~~ 163 (843)
T PLN00116 158 NKMDRC 163 (843)
T ss_pred ECCccc
Confidence 999997
No 303
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.85 E-value=1.7e-08 Score=100.10 Aligned_cols=101 Identities=19% Similarity=0.240 Sum_probs=64.9
Q ss_pred cceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE
Q 011082 353 IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 432 (494)
Q Consensus 353 ~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl 432 (494)
+.++|+.|+|... .-..-..-+|.+++|.=... .++++.+.. ++...-.|+|+
T Consensus 144 ~DvIIVETVGvGQ----------sev~I~~~aDt~~~v~~pg~----------GD~~Q~iK~-------GimEiaDi~vI 196 (323)
T COG1703 144 YDVIIVETVGVGQ----------SEVDIANMADTFLVVMIPGA----------GDDLQGIKA-------GIMEIADIIVI 196 (323)
T ss_pred CCEEEEEecCCCc----------chhHHhhhcceEEEEecCCC----------CcHHHHHHh-------hhhhhhheeeE
Confidence 4667777777644 22234556787777764332 223333222 33455679999
Q ss_pred eCCCcCChHHHHHHHHHHc-----------CCCCEEEEEcccCCCHHHHHHHHHHHhcc
Q 011082 433 NKIDEDGAEEVYEELERRV-----------QGVPIYPVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 433 NKiDl~~~~e~~~~L~~~~-----------~~~~ii~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
||.|...++.....+...+ ...+++.+||.+++|+++|++.|.+....
T Consensus 197 NKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 197 NKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred eccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence 9999887754433333222 24589999999999999999999877543
No 304
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.85 E-value=1.2e-08 Score=105.66 Aligned_cols=157 Identities=17% Similarity=0.262 Sum_probs=86.2
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCC---ccc--ccceeecceeeEEeecC-cceEEecCCCccCCccccccchhhHHHH-
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPA---VGH--YSFTTLRPNLGNMNFDD-IQITVADIPGLIKGAHENRGLGHAFLRH- 380 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~---i~~--~~ftTl~p~~g~v~~~~-~~~~l~DtPGli~~a~~~~~L~~~fl~~- 380 (494)
+||++|.+|+|||||+|+|-|.... .+. ..-||..++. +..+. ..+++||.||+...... ...++..
T Consensus 37 ~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~--Y~~p~~pnv~lWDlPG~gt~~f~----~~~Yl~~~ 110 (376)
T PF05049_consen 37 NIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTP--YPHPKFPNVTLWDLPGIGTPNFP----PEEYLKEV 110 (376)
T ss_dssp EEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EE--EE-SS-TTEEEEEE--GGGSS------HHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCee--CCCCCCCCCeEEeCCCCCCCCCC----HHHHHHHc
Confidence 7999999999999999999875321 111 1224444432 22233 57999999998642221 1233333
Q ss_pred -HHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcC------------ChHHHHHHH
Q 011082 381 -IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDED------------GAEEVYEEL 447 (494)
Q Consensus 381 -i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~------------~~~e~~~~L 447 (494)
+...|++|++.+-.- ....-.+..++.. ..+|..+|-+|+|.. +.++.++.+
T Consensus 111 ~~~~yD~fiii~s~rf----------~~ndv~La~~i~~-----~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~I 175 (376)
T PF05049_consen 111 KFYRYDFFIIISSERF----------TENDVQLAKEIQR-----MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEI 175 (376)
T ss_dssp TGGG-SEEEEEESSS------------HHHHHHHHHHHH-----TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHH
T ss_pred cccccCEEEEEeCCCC----------chhhHHHHHHHHH-----cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHH
Confidence 346687777665221 1223334455544 378999999999961 112334444
Q ss_pred HHHc---------CCCCEEEEEccc--CCCHHHHHHHHHHHhcccCCcc
Q 011082 448 ERRV---------QGVPIYPVCAVL--EEGVPELKVGLRMLVNGEKSER 485 (494)
Q Consensus 448 ~~~~---------~~~~ii~ISA~~--g~gI~~L~~~I~~~l~~~~~~~ 485 (494)
++.+ ...++|.||+.+ ..++..|.+.|..-|...+++.
T Consensus 176 R~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~~ 224 (376)
T PF05049_consen 176 RENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRHA 224 (376)
T ss_dssp HHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHHH
T ss_pred HHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHHH
Confidence 4432 345899999976 4567889999988887776653
No 305
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.85 E-value=8.8e-09 Score=99.39 Aligned_cols=169 Identities=20% Similarity=0.220 Sum_probs=114.4
Q ss_pred CCCCCceeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcc--eEEecCCCccCCc
Q 011082 290 AGEPGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ--ITVADIPGLIKGA 367 (494)
Q Consensus 290 ~g~~ge~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~--~~l~DtPGli~~a 367 (494)
.|...--..++|++..+...|++|+|||||||.++.|.+. +.|+.|.+.+++.. ..+.|..|+..
T Consensus 12 Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgl-----------le~~~G~I~~~g~~~~~~~~~rIGyLP-- 78 (300)
T COG4152 12 FGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGL-----------LEPTEGEITWNGGPLSQEIKNRIGYLP-- 78 (300)
T ss_pred cCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhcc-----------CCccCceEEEcCcchhhhhhhhcccCh--
Confidence 3544455678999999999999999999999999999997 88999999998843 35556666643
Q ss_pred cccccchhh--------HHHH---------HHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEE
Q 011082 368 HENRGLGHA--------FLRH---------IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLV 430 (494)
Q Consensus 368 ~~~~~L~~~--------fl~~---------i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~Il 430 (494)
+.++|-.. |+.. -..++.++--+++..... .....+..-..+--.+...+.+.|.++
T Consensus 79 -EERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~-----~kIk~LSKGnqQKIQfisaviHePeLl 152 (300)
T COG4152 79 -EERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKT-----KKIKELSKGNQQKIQFISAVIHEPELL 152 (300)
T ss_pred -hhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccccccc-----chHHHhhhhhhHHHHHHHHHhcCCCEE
Confidence 22333211 1111 123344444455544221 333444443333333344567899999
Q ss_pred EE----eCCCcCChHHHHHHHHHHcCCCCEEEEEcccCCCHHHHHHHHHHH
Q 011082 431 VA----NKIDEDGAEEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRML 477 (494)
Q Consensus 431 Vl----NKiDl~~~~e~~~~L~~~~~~~~ii~ISA~~g~gI~~L~~~I~~~ 477 (494)
++ +.+|.++.+...+.+.+.......|..|++.-+.+++|++.+.-+
T Consensus 153 ILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL 203 (300)
T COG4152 153 ILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLML 203 (300)
T ss_pred EecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhhee
Confidence 98 899999887766666666645566778889999999999998643
No 306
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.83 E-value=8.1e-09 Score=101.33 Aligned_cols=159 Identities=24% Similarity=0.301 Sum_probs=91.1
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC-CCCccccc-----ceeec--ceeeEEeec-----CcceEEecCCC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA-KPAVGHYS-----FTTLR--PNLGNMNFD-----DIQITVADIPG 362 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~-~~~i~~~~-----ftTl~--p~~g~v~~~-----~~~~~l~DtPG 362 (494)
-..|+|++..+..++||||||||||||++++.|. +|..+... ++-.. ..+|.+... +.++++.|+.-
T Consensus 20 l~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~ 99 (254)
T COG1121 20 LEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVL 99 (254)
T ss_pred eeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHH
Confidence 3468899999999999999999999999999995 33322211 11111 123333221 13344445443
Q ss_pred ccCCccccccchhhH-HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eCCCc
Q 011082 363 LIKGAHENRGLGHAF-LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDE 437 (494)
Q Consensus 363 li~~a~~~~~L~~~f-l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NKiDl 437 (494)
....... ++.... .+.-+.++-+|--+.+.+..+..-+..+..+.+.++. +++|...|.++++ +.+|.
T Consensus 100 ~g~~~~~--g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~l-----ARAL~~~p~lllLDEP~~gvD~ 172 (254)
T COG1121 100 LGRYGKK--GWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLL-----ARALAQNPDLLLLDEPFTGVDV 172 (254)
T ss_pred ccCcccc--cccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHH-----HHHhccCCCEEEecCCcccCCH
Confidence 3211111 111000 0111233333444444443333344566777776644 3577899999998 88998
Q ss_pred CChHHHHHHHHHHc-CCCCEEEEEc
Q 011082 438 DGAEEVYEELERRV-QGVPIYPVCA 461 (494)
Q Consensus 438 ~~~~e~~~~L~~~~-~~~~ii~ISA 461 (494)
....++++.|.+.. .+..++.||+
T Consensus 173 ~~~~~i~~lL~~l~~eg~tIl~vtH 197 (254)
T COG1121 173 AGQKEIYDLLKELRQEGKTVLMVTH 197 (254)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 88888887777766 3556666654
No 307
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.81 E-value=5.1e-09 Score=95.91 Aligned_cols=157 Identities=15% Similarity=0.132 Sum_probs=107.4
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCCcccccce-eecceeeEEee--cCcceEEecCCCccCCccccccchhhHHHHH
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFT-TLRPNLGNMNF--DDIQITVADIPGLIKGAHENRGLGHAFLRHI 381 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ft-Tl~p~~g~v~~--~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i 381 (494)
...++.+||.-++||||+|.+.+.. ....+|.-| -.+.....+.+ .+..+.+|||.|..+ +......++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkg-ifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeE-------fDaItkAyy 90 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKG-IFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEE-------FDAITKAYY 90 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhcc-ccccccccccchhhhhHHHHhhHHHHHHHHHHhccchh-------HHHHHHHHh
Confidence 3447899999999999999999853 122222111 11122222222 336778999999876 222223567
Q ss_pred HhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH----HHHHHHHHHcCCCCEE
Q 011082 382 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIY 457 (494)
Q Consensus 382 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~----e~~~~L~~~~~~~~ii 457 (494)
+.|...++|+.-++ +.+++....|.+++.. .....|.++|-||+|+.+.. ...+.+.+.+ ...++
T Consensus 91 rgaqa~vLVFSTTD-------r~SFea~~~w~~kv~~---e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l-~~Rly 159 (246)
T KOG4252|consen 91 RGAQASVLVFSTTD-------RYSFEATLEWYNKVQK---ETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKL-HKRLY 159 (246)
T ss_pred ccccceEEEEeccc-------HHHHHHHHHHHHHHHH---HhccCCeEEeeccchhhHhhhcchHHHHHHHHHh-hhhhh
Confidence 78888999998887 5678888888777654 34579999999999998653 2233344443 35678
Q ss_pred EEEcccCCCHHHHHHHHHHHhcc
Q 011082 458 PVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 458 ~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
-+|++...|+.+++..|.+.+.+
T Consensus 160 RtSvked~NV~~vF~YLaeK~~q 182 (246)
T KOG4252|consen 160 RTSVKEDFNVMHVFAYLAEKLTQ 182 (246)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHH
Confidence 89999999999999998876543
No 308
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.79 E-value=3.1e-08 Score=107.82 Aligned_cols=126 Identities=16% Similarity=0.187 Sum_probs=76.4
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCCcccc---ccchhhHHHHH
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN---RGLGHAFLRHI 381 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~---~~L~~~fl~~i 381 (494)
..+|+|+|.+|+|||||+|+|++.+. .+..+...|..........++..+.++||||+.+..... ..+.......+
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~L 197 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFI 197 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHH
Confidence 34799999999999999999999864 444443344444333344567889999999998753211 11112222233
Q ss_pred H--hhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHh-hhcccCCCCEEEEEeCCCcCC
Q 011082 382 E--RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEH-HQEGLSDRPSLVVANKIDEDG 439 (494)
Q Consensus 382 ~--~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~-~~~~l~~~P~IlVlNKiDl~~ 439 (494)
. .+|++|+|..+.... ...+.. .++..+.. |... .-+-+|||++..|...
T Consensus 198 sk~gpDVVLlV~RLd~~~------~D~eD~-~aLr~Iq~lFG~~-Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 198 KKNPPDIVLYVDRLDMQT------RDSNDL-PLLRTITDVLGPS-IWFNAIVTLTHAASAP 250 (763)
T ss_pred hcCCCCEEEEEEeCCCcc------ccHHHH-HHHHHHHHHhCHH-hHcCEEEEEeCCccCC
Confidence 3 368889888765311 111222 23333322 2333 2477899999999764
No 309
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.78 E-value=1.7e-08 Score=113.98 Aligned_cols=115 Identities=18% Similarity=0.208 Sum_probs=74.6
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCC----------Ccccc------cceeecceeeE----EeecCcceEEecCCCcc
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKP----------AVGHY------SFTTLRPNLGN----MNFDDIQITVADIPGLI 364 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~----------~i~~~------~ftTl~p~~g~----v~~~~~~~~l~DtPGli 364 (494)
.+.+|+++|..++|||||+++|....- ...++ ...|+...... +...+..+.++||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 345899999999999999999964210 00111 12343332222 33345789999999997
Q ss_pred CCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCC
Q 011082 365 KGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDG 439 (494)
Q Consensus 365 ~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~ 439 (494)
+ +.......+..+|++|+|+|+..... .+...++..+.. .+.|.|+|+||+|...
T Consensus 98 ~-------f~~~~~~al~~aD~~llVvda~~g~~--------~~t~~~~~~~~~-----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 D-------FGGDVTRAMRAVDGAIVVVCAVEGVM--------PQTETVLRQALK-----ENVKPVLFINKVDRLI 152 (720)
T ss_pred c-------cHHHHHHHHHhcCEEEEEEecCCCCC--------ccHHHHHHHHHH-----cCCCEEEEEEChhccc
Confidence 5 33455678899999999999876321 122233333222 2578899999999864
No 310
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.77 E-value=1.1e-08 Score=104.31 Aligned_cols=161 Identities=16% Similarity=0.134 Sum_probs=90.3
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcc------------eEEecCCCcc
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------ITVADIPGLI 364 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~------------~~l~DtPGli 364 (494)
..++|+++.+..++|+|++|||||||++.|++. +.|+.|.+.+++.. -++.+-+++.
T Consensus 24 ~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl-----------~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~ 92 (306)
T PRK13537 24 DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL-----------THPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLD 92 (306)
T ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEecccchHHHHhcEEEEeccCcCC
Confidence 568899999999999999999999999999997 44555666555421 1333444444
Q ss_pred CCccccccch--hhH-----HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----e
Q 011082 365 KGAHENRGLG--HAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----N 433 (494)
Q Consensus 365 ~~a~~~~~L~--~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----N 433 (494)
........+. ..+ .....+++-++-.+++.+..+ .+...+..-..+...+..++...|.++++ +
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~ 167 (306)
T PRK13537 93 PDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKAD-----AKVGELSGGMKRRLTLARALVNDPDVLVLDEPTT 167 (306)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhc-----CchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCc
Confidence 3211111110 000 000112222333344433222 12223333333333445567789999998 8
Q ss_pred CCCcCChHHHHHHHHHHcCCCCEEEEEcccCCCHHHHHHH
Q 011082 434 KIDEDGAEEVYEELERRVQGVPIYPVCAVLEEGVPELKVG 473 (494)
Q Consensus 434 KiDl~~~~e~~~~L~~~~~~~~ii~ISA~~g~gI~~L~~~ 473 (494)
.+|......+.+.|.+.......+.+|++.-..++++++.
T Consensus 168 gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~ 207 (306)
T PRK13537 168 GLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDR 207 (306)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence 8998887777777776542223445555544444444443
No 311
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.77 E-value=1.3e-08 Score=99.69 Aligned_cols=162 Identities=19% Similarity=0.181 Sum_probs=97.7
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC--------------------cce
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--------------------IQI 355 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~--------------------~~~ 355 (494)
-..++|++..+..|+++|+|||||||+|+.|||. +.|+.|.+.+++ +.=
T Consensus 40 Vqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGl-----------l~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~q 108 (325)
T COG4586 40 VQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGL-----------LLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQ 108 (325)
T ss_pred hheeeeecCCCcEEEEEcCCCCcchhhHHHHhCc-----------cccCCCeEEecCcCcchhHHHHHHHHHHHhhhhhe
Confidence 3578999999999999999999999999999998 667777776655 123
Q ss_pred EEecCCCccCCccccccc-hhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE--
Q 011082 356 TVADIPGLIKGAHENRGL-GHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA-- 432 (494)
Q Consensus 356 ~l~DtPGli~~a~~~~~L-~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl-- 432 (494)
+.||.|-+.. ...++-+ ....-..-++-+.+.-+.|+....+-+....+..+ ....+| ..+|.+.|.|+.+
T Consensus 109 l~Wdlp~~ds-~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGq--RmraeL---aaaLLh~p~VLfLDE 182 (325)
T COG4586 109 LWWDLPALDS-LEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQ--RMRAEL---AAALLHPPKVLFLDE 182 (325)
T ss_pred eeeechhhhh-HHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchH--HHHHHH---HHHhcCCCcEEEecC
Confidence 7788883321 1111000 00011122445666777777653321111122222 222233 3367789999997
Q ss_pred --eCCCcCChHHHHHHHHHHc--CCCCEEEEEcccCCCHHHHHHHHH
Q 011082 433 --NKIDEDGAEEVYEELERRV--QGVPIYPVCAVLEEGVPELKVGLR 475 (494)
Q Consensus 433 --NKiDl~~~~e~~~~L~~~~--~~~~ii~ISA~~g~gI~~L~~~I~ 475 (494)
=.+|......+.+.++++. .+.+++.+| +.-.+|..|++.+.
T Consensus 183 pTvgLDV~aq~~ir~Flke~n~~~~aTVllTT-H~~~di~~lc~rv~ 228 (325)
T COG4586 183 PTVGLDVNAQANIREFLKEYNEERQATVLLTT-HIFDDIATLCDRVL 228 (325)
T ss_pred CccCcchhHHHHHHHHHHHHHHhhCceEEEEe-cchhhHHHhhhheE
Confidence 3445445556666676665 345555555 56677888887764
No 312
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.77 E-value=8.4e-09 Score=96.97 Aligned_cols=159 Identities=18% Similarity=0.200 Sum_probs=96.9
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce------------EEecCCCcc
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI------------TVADIPGLI 364 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~------------~l~DtPGli 364 (494)
+.++|+.+.+..+||+|+|||||||+|+.|... +.|..|.+..++... ++.+-.|++
T Consensus 19 rdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatl-----------L~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY 87 (245)
T COG4555 19 RDVSFEAEEGEITGLLGENGAGKTTLLRMIATL-----------LIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLY 87 (245)
T ss_pred hheeEEeccceEEEEEcCCCCCchhHHHHHHHh-----------ccCCCceEEEeecccccChHHHhhhcceecCCcChh
Confidence 468899999999999999999999999999987 788888887776211 222444554
Q ss_pred CCccccccchhhH--HHH---------HHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE-
Q 011082 365 KGAHENRGLGHAF--LRH---------IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA- 432 (494)
Q Consensus 365 ~~a~~~~~L~~~f--l~~---------i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl- 432 (494)
....-..++. .| +.. ++.-.-.+-+-+..+ .....+..-+++-...++++.++|.++|+
T Consensus 88 ~RlT~rEnl~-~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~--------rRv~~~S~G~kqkV~iARAlvh~P~i~vlD 158 (245)
T COG4555 88 ARLTARENLK-YFARLNGLSRKEIKARIAELSKRLQLLEYLD--------RRVGEFSTGMKQKVAIARALVHDPSILVLD 158 (245)
T ss_pred hhhhHHHHHH-HHHHHhhhhhhHHHHHHHHHHHHhChHHHHH--------HHHhhhchhhHHHHHHHHHHhcCCCeEEEc
Confidence 4222110000 00 000 000001111111111 01112222233333445678899999999
Q ss_pred ---eCCCcCChHHHHHHHHHHcCCCCEEEEEcccCCCHHHHHHHHH
Q 011082 433 ---NKIDEDGAEEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLR 475 (494)
Q Consensus 433 ---NKiDl~~~~e~~~~L~~~~~~~~ii~ISA~~g~gI~~L~~~I~ 475 (494)
|.+|+.......+.+++......++..|++.-+.++.|++.+.
T Consensus 159 EP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvi 204 (245)
T COG4555 159 EPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVI 204 (245)
T ss_pred CCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEE
Confidence 8999988877777777766445677788887777888887653
No 313
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.75 E-value=2.9e-08 Score=96.56 Aligned_cols=149 Identities=25% Similarity=0.244 Sum_probs=86.5
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce--------EEecCCCccC--C
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI--------TVADIPGLIK--G 366 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~--------~l~DtPGli~--~ 366 (494)
..++|++..+..|+|||++|||||||||.++|. ..|+.|.+.+++..+ ++..-+-+.. .
T Consensus 20 ~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL-----------~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~T 88 (248)
T COG1116 20 EDINLSVEKGEFVAILGPSGCGKSTLLRLIAGL-----------EKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLT 88 (248)
T ss_pred ccceeEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCcccCCCCCCEEEEeccCcccchhh
Confidence 367899999999999999999999999999998 445555555544221 1111111111 0
Q ss_pred ccccccchhhH-----HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eCCCc
Q 011082 367 AHENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDE 437 (494)
Q Consensus 367 a~~~~~L~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NKiDl 437 (494)
.-+|..++... -+..+.++-+|..|.+++..+..+...+..+. +-..+++++...|.|+++ .-+|.
T Consensus 89 v~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMr-----QRVaiARAL~~~P~lLLlDEPFgALDa 163 (248)
T COG1116 89 VLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMR-----QRVAIARALATRPKLLLLDEPFGALDA 163 (248)
T ss_pred HHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHH-----HHHHHHHHHhcCCCEEEEcCCcchhhH
Confidence 11222222111 11223455666667776654433333444443 334555677889999996 55665
Q ss_pred CChHHHHHHHHHHc--CCCCEEEEEc
Q 011082 438 DGAEEVYEELERRV--QGVPIYPVCA 461 (494)
Q Consensus 438 ~~~~e~~~~L~~~~--~~~~ii~ISA 461 (494)
.......+.+.+.. ...++++|++
T Consensus 164 lTR~~lq~~l~~lw~~~~~TvllVTH 189 (248)
T COG1116 164 LTREELQDELLRLWEETRKTVLLVTH 189 (248)
T ss_pred HHHHHHHHHHHHHHHhhCCEEEEEeC
Confidence 55554444444443 3467888875
No 314
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.74 E-value=1.7e-08 Score=104.32 Aligned_cols=162 Identities=18% Similarity=0.134 Sum_probs=90.6
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcc------------eEEecCCCc
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------ITVADIPGL 363 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~------------~~l~DtPGl 363 (494)
-..++|++..+..++|+|+|||||||||+.|++. +.|..|.+.+++.. .++.+.+.+
T Consensus 57 l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl-----------~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~ 125 (340)
T PRK13536 57 VNGLSFTVASGECFGLLGPNGAGKSTIARMILGM-----------TSPDAGKITVLGVPVPARARLARARIGVVPQFDNL 125 (340)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCceEEEECCEECCcchHHHhccEEEEeCCccC
Confidence 3578899999999999999999999999999997 44556666655421 123344444
Q ss_pred cCCccccccch--hhH-----HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----
Q 011082 364 IKGAHENRGLG--HAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA---- 432 (494)
Q Consensus 364 i~~a~~~~~L~--~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl---- 432 (494)
.........+. ..+ ....+.++-++-.+++.+..+ .....+..-......+..++...|.++++
T Consensus 126 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~-----~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt 200 (340)
T PRK13536 126 DLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKAD-----ARVSDLSGGMKRRLTLARALINDPQLLILDEPT 200 (340)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhC-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 33211110010 000 000112223333444443222 12233333333333444567789999998
Q ss_pred eCCCcCChHHHHHHHHHHcCCCCEEEEEcccCCCHHHHHHH
Q 011082 433 NKIDEDGAEEVYEELERRVQGVPIYPVCAVLEEGVPELKVG 473 (494)
Q Consensus 433 NKiDl~~~~e~~~~L~~~~~~~~ii~ISA~~g~gI~~L~~~ 473 (494)
+.+|......+.+.|.+.......+.+|++.-.-++++++.
T Consensus 201 ~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~ 241 (340)
T PRK13536 201 TGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDR 241 (340)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence 88998888777777776543223445555544434444443
No 315
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.73 E-value=5.3e-08 Score=98.16 Aligned_cols=144 Identities=23% Similarity=0.286 Sum_probs=92.7
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCCCc-----------c----------c------------ccceeecceeeEEeecC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKPAV-----------G----------H------------YSFTTLRPNLGNMNFDD 352 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~~i-----------~----------~------------~~ftTl~p~~g~v~~~~ 352 (494)
.-++.-.|.-.-|||||+-+|.-....+ + + ..+.|++.....+.-+.
T Consensus 6 lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~K 85 (431)
T COG2895 6 LLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEK 85 (431)
T ss_pred ceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccccc
Confidence 3367778999999999999985331110 0 0 12256666666665566
Q ss_pred cceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccC-CCCEEEE
Q 011082 353 IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLS-DRPSLVV 431 (494)
Q Consensus 353 ~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~-~~P~IlV 431 (494)
+.|+++||||+.+ +...+..-...||+.+++||+... ..++.+.... + ..|. -+.+|+.
T Consensus 86 RkFIiADTPGHeQ-------YTRNMaTGASTadlAIlLVDAR~G--------vl~QTrRHs~-I----~sLLGIrhvvvA 145 (431)
T COG2895 86 RKFIIADTPGHEQ-------YTRNMATGASTADLAILLVDARKG--------VLEQTRRHSF-I----ASLLGIRHVVVA 145 (431)
T ss_pred ceEEEecCCcHHH-------HhhhhhcccccccEEEEEEecchh--------hHHHhHHHHH-H----HHHhCCcEEEEE
Confidence 8899999999875 444444556779999999998652 2333332211 1 1122 3566667
Q ss_pred EeCCCcCCh-HHHHHHHHHHc---------CCCCEEEEEcccCCCHHH
Q 011082 432 ANKIDEDGA-EEVYEELERRV---------QGVPIYPVCAVLEEGVPE 469 (494)
Q Consensus 432 lNKiDl~~~-~e~~~~L~~~~---------~~~~ii~ISA~~g~gI~~ 469 (494)
+|||||.+- ++.++.|...+ ....+||+||+.|+|+..
T Consensus 146 VNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 146 VNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred EeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 799999874 34444444332 235789999999999864
No 316
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=1.3e-07 Score=105.39 Aligned_cols=128 Identities=24% Similarity=0.329 Sum_probs=92.9
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHc---CCCCccccc---------------ceeecceeeEEeecC-cceEEecCCCcc
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISR---AKPAVGHYS---------------FTTLRPNLGNMNFDD-IQITVADIPGLI 364 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~---~~~~i~~~~---------------ftTl~p~~g~v~~~~-~~~~l~DtPGli 364 (494)
....+|+|+++-.+|||||..+|.- .-.++++.. .-|+....-++.+.+ ..+.++||||++
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV 87 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV 87 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence 4556899999999999999999853 222222222 245555555777885 999999999998
Q ss_pred CCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH--H
Q 011082 365 KGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE--E 442 (494)
Q Consensus 365 ~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~--e 442 (494)
+ +.....+.++-+|..+.|+|+... ...+.+.++.+...| +.|.|+++||||....+ .
T Consensus 88 D-------Ft~EV~rslrvlDgavvVvdaveG--------V~~QTEtv~rqa~~~-----~vp~i~fiNKmDR~~a~~~~ 147 (697)
T COG0480 88 D-------FTIEVERSLRVLDGAVVVVDAVEG--------VEPQTETVWRQADKY-----GVPRILFVNKMDRLGADFYL 147 (697)
T ss_pred c-------cHHHHHHHHHhhcceEEEEECCCC--------eeecHHHHHHHHhhc-----CCCeEEEEECccccccChhh
Confidence 7 555667788889999999999874 234556666766655 68999999999987653 3
Q ss_pred HHHHHHHHc
Q 011082 443 VYEELERRV 451 (494)
Q Consensus 443 ~~~~L~~~~ 451 (494)
..+.+...+
T Consensus 148 ~~~~l~~~l 156 (697)
T COG0480 148 VVEQLKERL 156 (697)
T ss_pred hHHHHHHHh
Confidence 445555554
No 317
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.71 E-value=3.1e-08 Score=95.04 Aligned_cols=149 Identities=15% Similarity=0.181 Sum_probs=78.9
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce---------EEecCCCccCCc
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI---------TVADIPGLIKGA 367 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~---------~l~DtPGli~~a 367 (494)
..++|++..+..++|+|++|||||||++.|++. +.|..|.+.+++..+ ++...+.+....
T Consensus 17 ~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~ 85 (210)
T cd03269 17 DDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI-----------ILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKM 85 (210)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCCchhHHHHccEEEeccCCcCCcCC
Confidence 468899999999999999999999999999997 335556666554221 222333333211
Q ss_pred cccccc--hhhH-----HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eCCC
Q 011082 368 HENRGL--GHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKID 436 (494)
Q Consensus 368 ~~~~~L--~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NKiD 436 (494)
.....+ ...+ ....+.++-++-.+++....+......+..+.+.+ .+..++...|.++++ +.+|
T Consensus 86 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl-----~la~al~~~p~~lllDEP~~~LD 160 (210)
T cd03269 86 KVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKV-----QFIAAVIHDPELLILDEPFSGLD 160 (210)
T ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHH-----HHHHHHhcCCCEEEEeCCCcCCC
Confidence 110000 0000 00011122222222322211111112333333333 233456678899888 8888
Q ss_pred cCChHHHHHHHHHHc-CCCCEEEEEc
Q 011082 437 EDGAEEVYEELERRV-QGVPIYPVCA 461 (494)
Q Consensus 437 l~~~~e~~~~L~~~~-~~~~ii~ISA 461 (494)
......+.+.+.+.. .+..++.+|+
T Consensus 161 ~~~~~~~~~~l~~~~~~~~tii~~sH 186 (210)
T cd03269 161 PVNVELLKDVIRELARAGKTVILSTH 186 (210)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 777777777776654 3444554543
No 318
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.71 E-value=2.1e-08 Score=101.94 Aligned_cols=148 Identities=17% Similarity=0.244 Sum_probs=82.3
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce------------EEecCCCcc
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI------------TVADIPGLI 364 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~------------~l~DtPGli 364 (494)
..++|++..+..++|+|++|||||||+++|++. +.|..|.+.+++..+ ++.+.+.+.
T Consensus 10 ~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 10 DGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTL-----------LRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCC
Confidence 467899999999999999999999999999997 445566666554221 223333333
Q ss_pred CCccccccchh--hH-----HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----e
Q 011082 365 KGAHENRGLGH--AF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----N 433 (494)
Q Consensus 365 ~~a~~~~~L~~--~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----N 433 (494)
........+.. .+ ....+.++-++-.+++.+..+......+..+.+. ..+..++...|.++++ +
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr-----v~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRR-----LDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHH-----HHHHHHHhcCCCEEEEeCCCc
Confidence 32111101100 00 0001123333333444322121111233333333 3344566789999998 8
Q ss_pred CCCcCChHHHHHHHHHHc-CCCCEEEEE
Q 011082 434 KIDEDGAEEVYEELERRV-QGVPIYPVC 460 (494)
Q Consensus 434 KiDl~~~~e~~~~L~~~~-~~~~ii~IS 460 (494)
.+|......+.+.|.+.. .+..++.+|
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~s 181 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTT 181 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 888877777777776654 344454444
No 319
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.70 E-value=7.9e-08 Score=93.03 Aligned_cols=149 Identities=24% Similarity=0.266 Sum_probs=88.9
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce-----------------EEec
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------------TVAD 359 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~-----------------~l~D 359 (494)
+.++|+++.+..|+|+|++|||||||||.|.+. ..|+.|.+.+++..+ .+..
T Consensus 22 ~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~l-----------d~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ 90 (226)
T COG1136 22 KDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGL-----------DKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQ 90 (226)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------cCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECc
Confidence 367899999999999999999999999999987 445556655554211 1112
Q ss_pred CCCccCCc--cccccchhhHH-----HHHHhhceeeEEEecCCCCC-CCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEE
Q 011082 360 IPGLIKGA--HENRGLGHAFL-----RHIERTKVLAYVVDLASGLD-GRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 431 (494)
Q Consensus 360 tPGli~~a--~~~~~L~~~fl-----~~i~~ad~ll~VvD~s~~~~-~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlV 431 (494)
-..++... .+|..+...+. ...+.+..++-++.+.+... ..+...+..+.+.+ +.++++.+.|.|++
T Consensus 91 ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRV-----AIARAL~~~P~iil 165 (226)
T COG1136 91 NFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRV-----AIARALINNPKIIL 165 (226)
T ss_pred cCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHH-----HHHHHHhcCCCeEE
Confidence 22222221 12222211110 22334455566666654222 22223444554443 44567789999999
Q ss_pred E----eCCCcCChHHHHHHHHHHc--CCCCEEEEEc
Q 011082 432 A----NKIDEDGAEEVYEELERRV--QGVPIYPVCA 461 (494)
Q Consensus 432 l----NKiDl~~~~e~~~~L~~~~--~~~~ii~ISA 461 (494)
+ --+|..+.+++++.+.+.. .+..++.|++
T Consensus 166 ADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTH 201 (226)
T COG1136 166 ADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTH 201 (226)
T ss_pred eeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 7 4477777778888887775 2456666654
No 320
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.69 E-value=3.2e-08 Score=95.34 Aligned_cols=34 Identities=35% Similarity=0.297 Sum_probs=31.6
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|++..+..++|+|++|||||||++.|++.
T Consensus 19 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 19 LDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3578899999999999999999999999999997
No 321
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=6.7e-08 Score=104.65 Aligned_cols=155 Identities=26% Similarity=0.325 Sum_probs=99.5
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeec--------------------CcceEEecCCCcc
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD--------------------DIQITVADIPGLI 364 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~--------------------~~~~~l~DtPGli 364 (494)
..+.++|+|...+|||-||..|.+.++.-+.+-..| .++|...++ -.-++++||||..
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggit--qqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGIT--QQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhcccccccccccee--eeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 346899999999999999999998766655554443 223322221 0247999999976
Q ss_pred CCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----
Q 011082 365 KGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---- 440 (494)
Q Consensus 365 ~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~---- 440 (494)
....+ --+-...||+.|+|+|+.+... +...+.+..+ . ..+.|+||.+||+|..-.
T Consensus 552 sFtnl-------RsrgsslC~~aIlvvdImhGle----pqtiESi~lL----R-----~rktpFivALNKiDRLYgwk~~ 611 (1064)
T KOG1144|consen 552 SFTNL-------RSRGSSLCDLAILVVDIMHGLE----PQTIESINLL----R-----MRKTPFIVALNKIDRLYGWKSC 611 (1064)
T ss_pred hhhhh-------hhccccccceEEEEeehhccCC----cchhHHHHHH----H-----hcCCCeEEeehhhhhhcccccC
Confidence 53221 1123456999999999998643 1223333222 1 237899999999997421
Q ss_pred --H-----------HHHHHHHHHc------------------------CCCCEEEEEcccCCCHHHHHHHHHHHhccc
Q 011082 441 --E-----------EVYEELERRV------------------------QGVPIYPVCAVLEEGVPELKVGLRMLVNGE 481 (494)
Q Consensus 441 --~-----------e~~~~L~~~~------------------------~~~~ii~ISA~~g~gI~~L~~~I~~~l~~~ 481 (494)
. .+.+++...+ .-..++|+||.+|+||.+|+.+|.++-+..
T Consensus 612 p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~ 689 (1064)
T KOG1144|consen 612 PNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT 689 (1064)
T ss_pred CCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHH
Confidence 0 1111111111 013689999999999999999998876543
No 322
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.68 E-value=6.6e-08 Score=94.39 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=31.2
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 17 KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 468899999999999999999999999999997
No 323
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.68 E-value=4.2e-08 Score=94.84 Aligned_cols=149 Identities=23% Similarity=0.218 Sum_probs=80.4
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcc--------eEEecCCCccCCcc
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ--------ITVADIPGLIKGAH 368 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~--------~~l~DtPGli~~a~ 368 (494)
..++|++..+..++|+|++|||||||++.|++. +.|..|.+.+++.. .++.+.+.+.....
T Consensus 21 ~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~t 89 (220)
T cd03293 21 EDISLSVEEGEFVALVGPSGCGKSTLLRIIAGL-----------ERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLT 89 (220)
T ss_pred eceeEEEeCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECccccCcEEEEecccccccCCC
Confidence 467899999999999999999999999999997 23444555554421 12233333332111
Q ss_pred --ccccchhhH-----HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eCCCc
Q 011082 369 --ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDE 437 (494)
Q Consensus 369 --~~~~L~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NKiDl 437 (494)
++..+...+ ....+.++-++..+++.+..+......+..+.+.+. +..++...|.++++ +-+|.
T Consensus 90 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~-----la~al~~~p~lllLDEPt~~LD~ 164 (220)
T cd03293 90 VLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVA-----LARALAVDPDVLLLDEPFSALDA 164 (220)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHH-----HHHHHHcCCCEEEECCCCCCCCH
Confidence 111010000 000112222222223322111111224444444433 33456678999998 88888
Q ss_pred CChHHHHHHHHHHc--CCCCEEEEEc
Q 011082 438 DGAEEVYEELERRV--QGVPIYPVCA 461 (494)
Q Consensus 438 ~~~~e~~~~L~~~~--~~~~ii~ISA 461 (494)
.....+.+.|.+.. .+..++.+|+
T Consensus 165 ~~~~~~~~~l~~~~~~~~~tiii~sH 190 (220)
T cd03293 165 LTREQLQEELLDIWRETGKTVLLVTH 190 (220)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 77777777777653 2445555554
No 324
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.68 E-value=2.4e-08 Score=95.92 Aligned_cols=33 Identities=30% Similarity=0.403 Sum_probs=31.0
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 17 DDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999999999999997
No 325
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=9.4e-08 Score=101.78 Aligned_cols=153 Identities=22% Similarity=0.283 Sum_probs=94.6
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCC--CC-------------c--ccc--------------cceeecceeeEEeecCc
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAK--PA-------------V--GHY--------------SFTTLRPNLGNMNFDDI 353 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~--~~-------------i--~~~--------------~ftTl~p~~g~v~~~~~ 353 (494)
..-...++|..+||||||+..|.-.- +. . ++. .+.|.+.-.-.+.-+..
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 34467899999999999998884220 00 0 111 11233333333333346
Q ss_pred ceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEe
Q 011082 354 QITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVAN 433 (494)
Q Consensus 354 ~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlN 433 (494)
.++++|+||+-. +...++..+..+|+.++|+|++-.... .+-++.++.++...-|.. |.-...||++|
T Consensus 256 ~~tliDaPGhkd-------Fi~nmi~g~sqaD~avLvvd~s~~~FE-~gfd~~gQtrEha~llr~----Lgi~qlivaiN 323 (603)
T KOG0458|consen 256 IVTLIDAPGHKD-------FIPNMISGASQADVAVLVVDASTGEFE-SGFDPGGQTREHALLLRS----LGISQLIVAIN 323 (603)
T ss_pred eEEEecCCCccc-------cchhhhccccccceEEEEEECCcchhh-hccCCCCchHHHHHHHHH----cCcceEEEEee
Confidence 799999999543 444556667789999999999864321 223455666665544433 33456777789
Q ss_pred CCCcCCh-HHHHHHHH--------HHc----CCCCEEEEEcccCCCHHH
Q 011082 434 KIDEDGA-EEVYEELE--------RRV----QGVPIYPVCAVLEEGVPE 469 (494)
Q Consensus 434 KiDl~~~-~e~~~~L~--------~~~----~~~~ii~ISA~~g~gI~~ 469 (494)
|+|+.+= ++.+++|+ +.+ .+..+||||+..|+|+-.
T Consensus 324 KmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 324 KMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred cccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 9999863 22222222 222 345899999999999754
No 326
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.66 E-value=4.2e-08 Score=99.69 Aligned_cols=161 Identities=16% Similarity=0.128 Sum_probs=89.5
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcc------------eEEecCCCc
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------ITVADIPGL 363 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~------------~~l~DtPGl 363 (494)
-..++|++..+..++|+|++|||||||++.|++. +.|+.|.+.+++.. .++.+.+.+
T Consensus 18 l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl-----------~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l 86 (301)
T TIGR03522 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY-----------LPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPL 86 (301)
T ss_pred EEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEcccChHHHHhceEEecCCCCC
Confidence 4578899999999999999999999999999997 34555665555422 122333333
Q ss_pred cCCccccccch--hhH-----HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----
Q 011082 364 IKGAHENRGLG--HAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA---- 432 (494)
Q Consensus 364 i~~a~~~~~L~--~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl---- 432 (494)
.........+. ..+ ....++++-++..+++.+..+......+..+.+.+ .+..++...|.++++
T Consensus 87 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv-----~la~al~~~p~lliLDEPt 161 (301)
T TIGR03522 87 YLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRV-----GLAQALIHDPKVLILDEPT 161 (301)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHH-----HHHHHHhcCCCEEEEcCCc
Confidence 33211100010 000 00012233334444444322211112333333333 334566789999998
Q ss_pred eCCCcCChHHHHHHHHHHcCCCCEEEEEcccCCCHHHHHHH
Q 011082 433 NKIDEDGAEEVYEELERRVQGVPIYPVCAVLEEGVPELKVG 473 (494)
Q Consensus 433 NKiDl~~~~e~~~~L~~~~~~~~ii~ISA~~g~gI~~L~~~ 473 (494)
+.+|....+.+.+.+.+...+. .+.++++.-..++++++.
T Consensus 162 ~gLD~~~~~~l~~~l~~~~~~~-tiii~sH~l~~~~~~~d~ 201 (301)
T TIGR03522 162 TGLDPNQLVEIRNVIKNIGKDK-TIILSTHIMQEVEAICDR 201 (301)
T ss_pred ccCCHHHHHHHHHHHHHhcCCC-EEEEEcCCHHHHHHhCCE
Confidence 8899887777777777665444 444555544444444443
No 327
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.66 E-value=4.4e-08 Score=93.98 Aligned_cols=32 Identities=31% Similarity=0.338 Sum_probs=30.9
Q ss_pred EEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 298 ELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 298 ~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.++|++..+..++|+|++|||||||++.|++.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 78999999999999999999999999999997
No 328
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.66 E-value=1.3e-07 Score=88.58 Aligned_cols=75 Identities=21% Similarity=0.181 Sum_probs=54.4
Q ss_pred eeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh-----HHHHHHHHHHcCCCCEEEEE
Q 011082 386 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA-----EEVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 386 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~-----~e~~~~L~~~~~~~~ii~IS 460 (494)
+-++|+|++...+.+. +-.|.+.. ..++|+||.|+... +...+..++..++.++|++|
T Consensus 120 ~~v~VidvteGe~~P~----------------K~gP~i~~-aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n 182 (202)
T COG0378 120 LRVVVIDVTEGEDIPR----------------KGGPGIFK-ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTN 182 (202)
T ss_pred eEEEEEECCCCCCCcc----------------cCCCceeE-eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEe
Confidence 6678888877533211 11234444 78999999999753 34445566677899999999
Q ss_pred cccCCCHHHHHHHHHHH
Q 011082 461 AVLEEGVPELKVGLRML 477 (494)
Q Consensus 461 A~~g~gI~~L~~~I~~~ 477 (494)
+++|+|++++++++...
T Consensus 183 ~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 183 LKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred CCCCcCHHHHHHHHHhh
Confidence 99999999999998764
No 329
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.65 E-value=3.8e-08 Score=100.03 Aligned_cols=148 Identities=20% Similarity=0.207 Sum_probs=79.3
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcc------------eEEecCCCcc
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------ITVADIPGLI 364 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~------------~~l~DtPGli 364 (494)
..++|+++.+..++|+|++|||||||++.|++. +.|..|.+.+++.. .++.+.+.+.
T Consensus 21 ~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~ 89 (303)
T TIGR01288 21 NDLSFTIARGECFGLLGPNGAGKSTIARMLLGM-----------ISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLD 89 (303)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECcccHHHHhhcEEEEeccccCC
Confidence 468899999999999999999999999999997 23444554444321 1222333333
Q ss_pred CCccccccch--hhH-----HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----e
Q 011082 365 KGAHENRGLG--HAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----N 433 (494)
Q Consensus 365 ~~a~~~~~L~--~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----N 433 (494)
........+. ..+ ....+.++-++-.+++.+..+......+..+.+.+ .+..++...|.++++ +
T Consensus 90 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv-----~la~al~~~p~lllLDEPt~ 164 (303)
T TIGR01288 90 PEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRL-----TLARALINDPQLLILDEPTT 164 (303)
T ss_pred cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHH-----HHHHHHhcCCCEEEEeCCCc
Confidence 2111100010 000 00001122222233333211111112333333333 334566788999998 8
Q ss_pred CCCcCChHHHHHHHHHHc-CCCCEEEEE
Q 011082 434 KIDEDGAEEVYEELERRV-QGVPIYPVC 460 (494)
Q Consensus 434 KiDl~~~~e~~~~L~~~~-~~~~ii~IS 460 (494)
.+|......+.+.|.+.. .+..++.+|
T Consensus 165 gLD~~~~~~l~~~l~~~~~~g~til~~s 192 (303)
T TIGR01288 165 GLDPHARHLIWERLRSLLARGKTILLTT 192 (303)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 899887777777777654 344455444
No 330
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.65 E-value=4.2e-08 Score=94.31 Aligned_cols=33 Identities=30% Similarity=0.338 Sum_probs=31.0
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 19 ~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 19 HDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999999999999997
No 331
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.63 E-value=4.9e-08 Score=94.25 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=31.1
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 19 DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 468899999999999999999999999999997
No 332
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.63 E-value=1.1e-07 Score=91.65 Aligned_cols=33 Identities=30% Similarity=0.384 Sum_probs=31.1
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||+++|++.
T Consensus 21 ~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 21 KGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred eeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 468899999999999999999999999999997
No 333
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.62 E-value=4.6e-08 Score=94.30 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=30.8
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 22 ~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 22 DGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 467889999999999999999999999999997
No 334
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.62 E-value=5.1e-08 Score=91.08 Aligned_cols=56 Identities=30% Similarity=0.536 Sum_probs=45.9
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCc
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGL 363 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGl 363 (494)
...+|+++|.||+|||||+|+|++.+. .++++|++|...+... + +..+.++||||+
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~--~-~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVH--L-DKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEE--e-CCCEEEEECcCC
Confidence 345799999999999999999999765 7789999998655443 3 247899999996
No 335
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.62 E-value=4.5e-08 Score=95.47 Aligned_cols=148 Identities=23% Similarity=0.232 Sum_probs=78.9
Q ss_pred EEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcc--------eEEecCCCccCCcc-
Q 011082 298 ELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ--------ITVADIPGLIKGAH- 368 (494)
Q Consensus 298 ~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~--------~~l~DtPGli~~a~- 368 (494)
.++|++..+..++|+|++|||||||++.|++. +.|..|.+.+++.. .++.+.+.+.....
T Consensus 3 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv 71 (230)
T TIGR01184 3 GVNLTIQQGEFISLIGHSGCGKSTLLNLISGL-----------AQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTV 71 (230)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEECCCCChhheEEecCcccCCCCCH
Confidence 46888999999999999999999999999997 33445555554421 23333344333111
Q ss_pred -ccccchhh-----H--HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eCCC
Q 011082 369 -ENRGLGHA-----F--LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKID 436 (494)
Q Consensus 369 -~~~~L~~~-----f--l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NKiD 436 (494)
++..+... . ......+..++..+++.+..+......+..+.+.+ .+..++...|.++++ +-+|
T Consensus 72 ~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv-----~la~al~~~p~lllLDEPt~gLD 146 (230)
T TIGR01184 72 RENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRV-----AIARALSIRPKVLLLDEPFGALD 146 (230)
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHH-----HHHHHHHcCCCEEEEcCCCcCCC
Confidence 11000000 0 00001112222222332211111112333443333 333456688999998 7888
Q ss_pred cCChHHHHHHHHHHcC--CCCEEEEEc
Q 011082 437 EDGAEEVYEELERRVQ--GVPIYPVCA 461 (494)
Q Consensus 437 l~~~~e~~~~L~~~~~--~~~ii~ISA 461 (494)
......+.+.|.+... +..++.+|+
T Consensus 147 ~~~~~~l~~~l~~~~~~~~~tii~~sH 173 (230)
T TIGR01184 147 ALTRGNLQEELMQIWEEHRVTVLMVTH 173 (230)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 8777777777766542 445555554
No 336
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.61 E-value=8.6e-08 Score=92.43 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=30.9
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 28 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 28 GPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred ecceEEECCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 467889999999999999999999999999997
No 337
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.61 E-value=5.5e-08 Score=93.31 Aligned_cols=147 Identities=17% Similarity=0.171 Sum_probs=77.3
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce------------EEecCCCcc
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI------------TVADIPGLI 364 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~------------~l~DtPGli 364 (494)
..++|++..+ .++|+|++|||||||++.|++. +.|..|.+.+++..+ ++.+-+.+.
T Consensus 17 ~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 84 (211)
T cd03264 17 DGVSLTLGPG-MYGLLGPNGAGKTTLMRILATL-----------TPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVY 84 (211)
T ss_pred cceeEEEcCC-cEEEECCCCCCHHHHHHHHhCC-----------CCCCccEEEECCCccccchHHHHhheEEecCCCccc
Confidence 4678899888 9999999999999999999997 334445555444211 122222222
Q ss_pred CCcc--ccccchhhHH----H-HHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----e
Q 011082 365 KGAH--ENRGLGHAFL----R-HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----N 433 (494)
Q Consensus 365 ~~a~--~~~~L~~~fl----~-~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----N 433 (494)
.... ++..+...+. . ..+.++.++..+++.+..+......+..+.+.+ .+..++...|.++++ +
T Consensus 85 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv-----~la~al~~~p~llllDEPt~ 159 (211)
T cd03264 85 PNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRV-----GIAQALVGDPSILIVDEPTA 159 (211)
T ss_pred ccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHH-----HHHHHHhcCCCEEEEcCCcc
Confidence 2111 1100000000 0 011122222222322211111112333333333 334566789999998 8
Q ss_pred CCCcCChHHHHHHHHHHcCCCCEEEEE
Q 011082 434 KIDEDGAEEVYEELERRVQGVPIYPVC 460 (494)
Q Consensus 434 KiDl~~~~e~~~~L~~~~~~~~ii~IS 460 (494)
-+|....+...+.|.+......++.+|
T Consensus 160 ~LD~~~~~~l~~~l~~~~~~~tii~vs 186 (211)
T cd03264 160 GLDPEERIRFRNLLSELGEDRIVILST 186 (211)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 888877777777777665444455454
No 338
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.61 E-value=5.3e-08 Score=94.11 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=30.9
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|+|.
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 17 RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred eceeEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999999999999997
No 339
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.61 E-value=3.8e-08 Score=94.11 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=31.5
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|++..+..++|+|++|||||||++.|++.
T Consensus 16 l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 16 LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3568899999999999999999999999999997
No 340
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.61 E-value=9.8e-08 Score=91.84 Aligned_cols=149 Identities=19% Similarity=0.169 Sum_probs=79.1
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcc-----------eEEecCCCccC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ-----------ITVADIPGLIK 365 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~-----------~~l~DtPGli~ 365 (494)
..++|++..+..++|+|++|||||||++.|++.. .|..|.+.+++.. .++.+.|.++.
T Consensus 15 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~ 83 (213)
T TIGR01277 15 MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFI-----------EPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFA 83 (213)
T ss_pred eeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-----------CCCCcEEEECCEEcccCChhccceEEEeccCccCC
Confidence 4789999999999999999999999999999972 3344444443321 12233344332
Q ss_pred CccccccchhhHH-------HHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eC
Q 011082 366 GAHENRGLGHAFL-------RHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NK 434 (494)
Q Consensus 366 ~a~~~~~L~~~fl-------~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NK 434 (494)
..+....+...+. ..-..++.++-.+++.+..+......+..+.+.+. +..++...|.++++ +-
T Consensus 84 ~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-----laral~~~p~llllDEPt~~ 158 (213)
T TIGR01277 84 HLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVA-----LARCLVRPNPILLLDEPFSA 158 (213)
T ss_pred CCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHH-----HHHHHhcCCCEEEEcCCCcc
Confidence 2111101100000 00011111222223222111111123444444432 23355678999998 78
Q ss_pred CCcCChHHHHHHHHHHcC--CCCEEEEEc
Q 011082 435 IDEDGAEEVYEELERRVQ--GVPIYPVCA 461 (494)
Q Consensus 435 iDl~~~~e~~~~L~~~~~--~~~ii~ISA 461 (494)
+|......+.+.|.+... +..++.+|+
T Consensus 159 LD~~~~~~~~~~l~~~~~~~~~tii~vsh 187 (213)
T TIGR01277 159 LDPLLREEMLALVKQLCSERQRTLLMVTH 187 (213)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 887777777777776542 455666654
No 341
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.61 E-value=6.4e-08 Score=94.17 Aligned_cols=33 Identities=33% Similarity=0.342 Sum_probs=30.8
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 17 NGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred ccceeEecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 467889999999999999999999999999997
No 342
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.60 E-value=1e-07 Score=91.41 Aligned_cols=33 Identities=33% Similarity=0.375 Sum_probs=30.9
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 18 ~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 18 DDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 467889999999999999999999999999997
No 343
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.60 E-value=1.2e-07 Score=94.26 Aligned_cols=149 Identities=19% Similarity=0.170 Sum_probs=78.7
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcc--------eEEecCCCccCCcc
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ--------ITVADIPGLIKGAH 368 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~--------~~l~DtPGli~~a~ 368 (494)
..++|++..+..++|+|++|||||||++.|++. +.|+.|.+.+++.. .++.+.+.+.....
T Consensus 29 ~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~t 97 (257)
T PRK11247 29 NQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL-----------ETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKK 97 (257)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCc
Confidence 568899999999999999999999999999997 33444554443311 12233333332111
Q ss_pred ccccchhhHH-HHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eCCCcCChHHH
Q 011082 369 ENRGLGHAFL-RHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEV 443 (494)
Q Consensus 369 ~~~~L~~~fl-~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NKiDl~~~~e~ 443 (494)
....+...+. ..-..++-++-.+++.+..+......+..+.+.+ .+..++...|.++++ +.+|......+
T Consensus 98 v~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl-----~laraL~~~p~lllLDEPt~~LD~~~~~~l 172 (257)
T PRK11247 98 VIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRV-----ALARALIHRPGLLLLDEPLGALDALTRIEM 172 (257)
T ss_pred HHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHH-----HHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Confidence 1000100000 0011111122222222211111112334444333 333456678999988 88888777777
Q ss_pred HHHHHHHc--CCCCEEEEEc
Q 011082 444 YEELERRV--QGVPIYPVCA 461 (494)
Q Consensus 444 ~~~L~~~~--~~~~ii~ISA 461 (494)
.+.|.+.. .+..++.+|+
T Consensus 173 ~~~L~~~~~~~~~tviivsH 192 (257)
T PRK11247 173 QDLIESLWQQHGFTVLLVTH 192 (257)
T ss_pred HHHHHHHHHHcCCEEEEEeC
Confidence 67666643 2445555554
No 344
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.60 E-value=9.2e-08 Score=91.78 Aligned_cols=33 Identities=33% Similarity=0.360 Sum_probs=30.7
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 17 ~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 17 KGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred cCceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999999999997
No 345
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.59 E-value=9.1e-08 Score=91.88 Aligned_cols=33 Identities=36% Similarity=0.362 Sum_probs=31.1
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 18 ~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 18 DGINISISAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 468899999999999999999999999999997
No 346
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.59 E-value=1.7e-07 Score=89.22 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=31.2
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 17 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 17 EGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 568899999999999999999999999999997
No 347
>PRK10908 cell division protein FtsE; Provisional
Probab=98.59 E-value=1.2e-07 Score=91.68 Aligned_cols=34 Identities=29% Similarity=0.281 Sum_probs=31.6
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|++..+..++|+|++|||||||++.|++.
T Consensus 18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3578899999999999999999999999999997
No 348
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.58 E-value=1.7e-07 Score=99.82 Aligned_cols=155 Identities=14% Similarity=0.155 Sum_probs=97.1
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCC--Ccccc-cceeecceeeEEeecCcceEEecCCCccCCccccccchhhHHHHHHh
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKP--AVGHY-SFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIER 383 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~--~i~~~-~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ 383 (494)
-+|+|+|..|+|||||+.+|+.... .+... +-.|+. ..+.-+.....++||.--.+ -.....+.+++
T Consensus 10 VRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP---advtPe~vpt~ivD~ss~~~-------~~~~l~~Eirk 79 (625)
T KOG1707|consen 10 VRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP---ADVTPENVPTSIVDTSSDSD-------DRLCLRKEIRK 79 (625)
T ss_pred eEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC---CccCcCcCceEEEecccccc-------hhHHHHHHHhh
Confidence 3799999999999999999987632 22111 112222 11222235578999963222 11234578999
Q ss_pred hceeeEEEecCCCCCCCCCCCCHHHHHHHHHH-HHhhhcccCCCCEEEEEeCCCcCChH-----HHHHHHHHHc-CCCCE
Q 011082 384 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIE-LEHHQEGLSDRPSLVVANKIDEDGAE-----EVYEELERRV-QGVPI 456 (494)
Q Consensus 384 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~e-L~~~~~~l~~~P~IlVlNKiDl~~~~-----e~~~~L~~~~-~~~~i 456 (494)
||+++.|+++.++ ...+.++..+.- +......-.+.|+|+|.||+|..... ....-|...+ .-..+
T Consensus 80 A~vi~lvyavd~~-------~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtc 152 (625)
T KOG1707|consen 80 ADVICLVYAVDDE-------STVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETC 152 (625)
T ss_pred cCEEEEEEecCCh-------HHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHH
Confidence 9999999998772 344444433322 22221112589999999999986432 1122233333 23468
Q ss_pred EEEEcccCCCHHHHHHHHHHHh
Q 011082 457 YPVCAVLEEGVPELKVGLRMLV 478 (494)
Q Consensus 457 i~ISA~~g~gI~~L~~~I~~~l 478 (494)
|.|||++..++.+++..-.+.+
T Consensus 153 iecSA~~~~n~~e~fYyaqKaV 174 (625)
T KOG1707|consen 153 IECSALTLANVSELFYYAQKAV 174 (625)
T ss_pred HhhhhhhhhhhHhhhhhhhhee
Confidence 9999999999999988776654
No 349
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.58 E-value=9e-08 Score=93.04 Aligned_cols=150 Identities=19% Similarity=0.169 Sum_probs=80.7
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEec-CCCccCCcc--cccc
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVAD-IPGLIKGAH--ENRG 372 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~D-tPGli~~a~--~~~~ 372 (494)
-..++|++..+..++|+|++|||||||++.|++. +.|..|.+.+++..+.... ..++....+ ++..
T Consensus 38 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~ 106 (224)
T cd03220 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI-----------YPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIY 106 (224)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEchhhcccccCCCCCcHHHHHH
Confidence 3578899999999999999999999999999997 4466777777664332211 122221111 0000
Q ss_pred chhhH----HHH-HHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eCCCcCChHHH
Q 011082 373 LGHAF----LRH-IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEV 443 (494)
Q Consensus 373 L~~~f----l~~-i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NKiDl~~~~e~ 443 (494)
+...+ ... .+.+..++-.+++.+..+......+..+.+.+ .+..++...|.++++ +-+|......+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv-----~laral~~~p~llllDEP~~gLD~~~~~~~ 181 (224)
T cd03220 107 LNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARL-----AFAIATALEPDILLIDEVLAVGDAAFQEKC 181 (224)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHH-----HHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 00000 000 01111112222222211111112333443333 233456678999988 78887777777
Q ss_pred HHHHHHHc-CCCCEEEEEc
Q 011082 444 YEELERRV-QGVPIYPVCA 461 (494)
Q Consensus 444 ~~~L~~~~-~~~~ii~ISA 461 (494)
.+.|.+.. .+..++.+|+
T Consensus 182 ~~~l~~~~~~~~tiii~sH 200 (224)
T cd03220 182 QRRLRELLKQGKTVILVSH 200 (224)
T ss_pred HHHHHHHHhCCCEEEEEeC
Confidence 77776654 2345555554
No 350
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.58 E-value=1.5e-07 Score=93.89 Aligned_cols=149 Identities=20% Similarity=0.188 Sum_probs=77.7
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCcc--ccccch
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAH--ENRGLG 374 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~--~~~~L~ 374 (494)
..++|++..+..++|+|++|||||||+++|+|. +.|..|.+.+++....+...+++..... ++..+.
T Consensus 41 ~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~ 109 (264)
T PRK13546 41 DDISLKAYEGDVIGLVGINGSGKSTLSNIIGGS-----------LSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFK 109 (264)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------cCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHH
Confidence 468899999999999999999999999999997 3455566666553112222233322111 000000
Q ss_pred h---hH--HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eCCCcCChHHHHH
Q 011082 375 H---AF--LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVYE 445 (494)
Q Consensus 375 ~---~f--l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NKiDl~~~~e~~~ 445 (494)
. .+ ......++-++..+++....+......+..+.+.+.. ..++...|.|+++ +-+|........+
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~L-----aral~~~p~iLlLDEPt~gLD~~~~~~l~~ 184 (264)
T PRK13546 110 MLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGF-----SINITVNPDILVIDEALSVGDQTFAQKCLD 184 (264)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHH-----HHHHhhCCCEEEEeCccccCCHHHHHHHHH
Confidence 0 00 0000111111111222111111112344555554432 3355678899988 7888766666666
Q ss_pred HHHHHc-CCCCEEEEEc
Q 011082 446 ELERRV-QGVPIYPVCA 461 (494)
Q Consensus 446 ~L~~~~-~~~~ii~ISA 461 (494)
.|.+.. .+..++.+|+
T Consensus 185 ~L~~~~~~g~tiIiisH 201 (264)
T PRK13546 185 KIYEFKEQNKTIFFVSH 201 (264)
T ss_pred HHHHHHHCCCEEEEEcC
Confidence 665543 3445555553
No 351
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.57 E-value=1.5e-07 Score=89.33 Aligned_cols=44 Identities=27% Similarity=0.462 Sum_probs=37.0
Q ss_pred EEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC
Q 011082 298 ELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD 352 (494)
Q Consensus 298 ~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~ 352 (494)
.++|++..+..++|+|++|||||||++.|++. +.|..|.+.+++
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g 61 (195)
T PRK13541 18 DLSITFLPSAITYIKGANGCGKSSLLRMIAGI-----------MQPSSGNIYYKN 61 (195)
T ss_pred EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECC
Confidence 48899999999999999999999999999997 345556666555
No 352
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.57 E-value=9.5e-08 Score=94.76 Aligned_cols=162 Identities=19% Similarity=0.173 Sum_probs=83.7
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcc--------eEEecCCCccCCc
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ--------ITVADIPGLIKGA 367 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~--------~~l~DtPGli~~a 367 (494)
-..++|++..+..++|+|++|||||||++.|++. +.|..|.+.+++.. .++...+.+....
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~ 85 (255)
T PRK11248 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGF-----------VPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWR 85 (255)
T ss_pred EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCC
Confidence 3568899999999999999999999999999997 23444544444321 1222333332211
Q ss_pred c--ccccchhhH-----HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eCCC
Q 011082 368 H--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKID 436 (494)
Q Consensus 368 ~--~~~~L~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NKiD 436 (494)
. ++..+...+ ......+.-++-.+++....+......+..+.+.+ .+..++...|.++++ +-+|
T Consensus 86 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl-----~laral~~~p~lllLDEPt~~LD 160 (255)
T PRK11248 86 NVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRV-----GIARALAANPQLLLLDEPFGALD 160 (255)
T ss_pred cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHH-----HHHHHHhcCCCEEEEeCCCccCC
Confidence 1 110000000 00001122222222222211111112333443333 333456678999998 8888
Q ss_pred cCChHHHHHHHHHHc--CCCCEEEEEcccCCCHHHHHHHH
Q 011082 437 EDGAEEVYEELERRV--QGVPIYPVCAVLEEGVPELKVGL 474 (494)
Q Consensus 437 l~~~~e~~~~L~~~~--~~~~ii~ISA~~g~gI~~L~~~I 474 (494)
......+.+.|.+.. .+..++.+|+ .-.-+..+.+.+
T Consensus 161 ~~~~~~l~~~L~~~~~~~g~tviivsH-~~~~~~~~~d~i 199 (255)
T PRK11248 161 AFTREQMQTLLLKLWQETGKQVLLITH-DIEEAVFMATEL 199 (255)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhCCEE
Confidence 877777777776653 2455665554 433344444433
No 353
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.57 E-value=1e-07 Score=91.32 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=31.4
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|++..+..++|+|++|||||||++.|++.
T Consensus 16 l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468899999999999999999999999999997
No 354
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.57 E-value=8.4e-08 Score=101.14 Aligned_cols=149 Identities=19% Similarity=0.177 Sum_probs=81.8
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcc------------e-EEecCCC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------I-TVADIPG 362 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~------------~-~l~DtPG 362 (494)
-..++|+++.+..++|+|+|||||||||+.|++. +.|..|.+.+++.. + ++...+.
T Consensus 19 L~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGl-----------l~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~ 87 (402)
T PRK09536 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGT-----------LTPTAGTVLVAGDDVEALSARAASRRVASVPQDTS 87 (402)
T ss_pred EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC-----------CCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCC
Confidence 3578899999999999999999999999999997 33444555544411 1 1122222
Q ss_pred ccCCcc--ccccchh-----hH----HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEE
Q 011082 363 LIKGAH--ENRGLGH-----AF----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 431 (494)
Q Consensus 363 li~~a~--~~~~L~~-----~f----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlV 431 (494)
+....+ ++..++. .+ ....+.++-++-.+++.+..+......+..+.+.+ .+..+|...|.|++
T Consensus 88 l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv-----~IArAL~~~P~iLL 162 (402)
T PRK09536 88 LSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRV-----LLARALAQATPVLL 162 (402)
T ss_pred CCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH-----HHHHHHHcCCCEEE
Confidence 211100 0000000 00 01112233334444443322211122344444333 33456678999999
Q ss_pred E----eCCCcCChHHHHHHHHHHc-CCCCEEEEE
Q 011082 432 A----NKIDEDGAEEVYEELERRV-QGVPIYPVC 460 (494)
Q Consensus 432 l----NKiDl~~~~e~~~~L~~~~-~~~~ii~IS 460 (494)
+ +.+|.....++++.|++.. .+..++.+|
T Consensus 163 LDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivs 196 (402)
T PRK09536 163 LDEPTASLDINHQVRTLELVRRLVDDGKTAVAAI 196 (402)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 8 8899887777777777664 344555554
No 355
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.57 E-value=8.1e-08 Score=93.61 Aligned_cols=33 Identities=30% Similarity=0.448 Sum_probs=30.8
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 22 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 22 KDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999999999999999997
No 356
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.56 E-value=9.8e-08 Score=93.14 Aligned_cols=33 Identities=30% Similarity=0.422 Sum_probs=30.7
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 17 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 17 DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred cCceEEecCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 457889999999999999999999999999997
No 357
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.56 E-value=7.4e-08 Score=92.50 Aligned_cols=33 Identities=30% Similarity=0.346 Sum_probs=31.2
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 17 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 17 DDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred eceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 568899999999999999999999999999997
No 358
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.56 E-value=7e-08 Score=93.44 Aligned_cols=161 Identities=20% Similarity=0.266 Sum_probs=93.6
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecC-CCccCCcc--ccccc
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADI-PGLIKGAH--ENRGL 373 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~Dt-PGli~~a~--~~~~L 373 (494)
+.++|++..+..|||||.||||||||++.|++. +.|+.|.+..++.-.-+++. .||..... +|..+
T Consensus 44 ~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi-----------~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l 112 (249)
T COG1134 44 KDISFEIYKGERVGIIGHNGAGKSTLLKLIAGI-----------YKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYL 112 (249)
T ss_pred cCceEEEeCCCEEEEECCCCCcHHHHHHHHhCc-----------cCCCCceEEEcceEehhhhcccCCCcccchHHHHHH
Confidence 468899999999999999999999999999998 78999999988854434444 34443222 12111
Q ss_pred hhhHH----HHH-HhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCCh----HHHH
Q 011082 374 GHAFL----RHI-ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVY 444 (494)
Q Consensus 374 ~~~fl----~~i-~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~----~e~~ 444 (494)
...++ +.+ +..+-|+-.-++-+..+ .|...+..-+..-..|+-+..-.|.|++++-+=-+.. +...
T Consensus 113 ~~~~~G~~~~ei~~~~~eIieFaELG~fi~-----~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~ 187 (249)
T COG1134 113 RGLILGLTRKEIDEKVDEIIEFAELGDFID-----QPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL 187 (249)
T ss_pred HHHHhCccHHHHHHHHHHHHHHHHHHHHhh-----CchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHH
Confidence 11111 111 12222222222222222 4555665555555556656677899999743321221 2344
Q ss_pred HHHHHHc-CCCCEEEEEcccCCCHHHHHHHH
Q 011082 445 EELERRV-QGVPIYPVCAVLEEGVPELKVGL 474 (494)
Q Consensus 445 ~~L~~~~-~~~~ii~ISA~~g~gI~~L~~~I 474 (494)
+.+.+.. .+..+|.||+- -.-|.++++.+
T Consensus 188 ~rl~e~~~~~~tiv~VSHd-~~~I~~~Cd~~ 217 (249)
T COG1134 188 ERLNELVEKNKTIVLVSHD-LGAIKQYCDRA 217 (249)
T ss_pred HHHHHHHHcCCEEEEEECC-HHHHHHhcCee
Confidence 5555552 45667777753 33355555444
No 359
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.56 E-value=2.5e-07 Score=90.62 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=31.4
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|++..+..++|+|++|||||||+++|++.
T Consensus 18 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468899999999999999999999999999997
No 360
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.56 E-value=1.6e-07 Score=89.87 Aligned_cols=33 Identities=30% Similarity=0.335 Sum_probs=31.1
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 18 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred ecceEEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 468899999999999999999999999999997
No 361
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.55 E-value=1.6e-07 Score=87.87 Aligned_cols=47 Identities=30% Similarity=0.417 Sum_probs=39.5
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCc
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI 353 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~ 353 (494)
-..++|++..+..++|+|++|||||||++.|++. +.|+.|.+.+++.
T Consensus 16 l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~ 62 (178)
T cd03229 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGL-----------EEPDSGSILIDGE 62 (178)
T ss_pred EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCE
Confidence 3568899999999999999999999999999997 4456677776653
No 362
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.55 E-value=2.9e-07 Score=89.86 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=31.5
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|++..+..++|+|++|||||||++.|++.
T Consensus 25 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3468899999999999999999999999999997
No 363
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.55 E-value=2.6e-07 Score=89.19 Aligned_cols=33 Identities=30% Similarity=0.356 Sum_probs=31.0
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 22 ~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 22 KGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999999999999997
No 364
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.54 E-value=3.9e-07 Score=84.17 Aligned_cols=120 Identities=21% Similarity=0.287 Sum_probs=77.3
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchh
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGH 375 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~ 375 (494)
-..++|+++.+..++|+|++|+|||||++.|++. +.|..|.+.+++..+.-.+.
T Consensus 16 l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-----------~~~~~G~v~~~g~~~~~~~~--------------- 69 (163)
T cd03216 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGL-----------YKPDSGEILVDGKEVSFASP--------------- 69 (163)
T ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEECCcCCH---------------
Confidence 3578899999999999999999999999999997 45677888777643211000
Q ss_pred hHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eCCCcCChHHHHHHHHHHc
Q 011082 376 AFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVYEELERRV 451 (494)
Q Consensus 376 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NKiDl~~~~e~~~~L~~~~ 451 (494)
.... ...+-++.++|. .+.+.+.. ..++...|.++++ +.+|......+.+.+++..
T Consensus 70 --~~~~--~~~i~~~~qLS~-----------G~~qrl~l-----aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~ 129 (163)
T cd03216 70 --RDAR--RAGIAMVYQLSV-----------GERQMVEI-----ARALARNARLLILDEPTAALTPAEVERLFKVIRRLR 129 (163)
T ss_pred --HHHH--hcCeEEEEecCH-----------HHHHHHHH-----HHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence 0001 112445555443 33333322 2345678889888 7888777777777776654
Q ss_pred -CCCCEEEEEc
Q 011082 452 -QGVPIYPVCA 461 (494)
Q Consensus 452 -~~~~ii~ISA 461 (494)
.+..++.+|.
T Consensus 130 ~~~~tiii~sh 140 (163)
T cd03216 130 AQGVAVIFISH 140 (163)
T ss_pred HCCCEEEEEeC
Confidence 3444555543
No 365
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.54 E-value=1.4e-07 Score=90.11 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=30.9
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 17 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 17 SGLSFTLAAGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 467889999999999999999999999999997
No 366
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.54 E-value=3.1e-07 Score=89.80 Aligned_cols=33 Identities=30% Similarity=0.448 Sum_probs=31.1
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 18 DDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 468899999999999999999999999999997
No 367
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.54 E-value=2.8e-07 Score=87.96 Aligned_cols=33 Identities=30% Similarity=0.399 Sum_probs=31.1
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 15 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 15 DDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred eceEEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 468899999999999999999999999999997
No 368
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.53 E-value=1.8e-07 Score=91.49 Aligned_cols=33 Identities=33% Similarity=0.444 Sum_probs=30.9
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 18 KDVSLSINPGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999999999999997
No 369
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.53 E-value=1.3e-07 Score=90.97 Aligned_cols=33 Identities=39% Similarity=0.435 Sum_probs=30.9
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 16 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 16 EDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 467899999999999999999999999999997
No 370
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.53 E-value=1.2e-07 Score=92.87 Aligned_cols=33 Identities=33% Similarity=0.446 Sum_probs=31.1
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 19 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 19 DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 468899999999999999999999999999997
No 371
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=3.7e-07 Score=94.92 Aligned_cols=149 Identities=19% Similarity=0.166 Sum_probs=84.9
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce-----------EEecCCCccC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGLIK 365 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~-----------~l~DtPGli~ 365 (494)
..++|++..+..++|+|++||||||||++|+|. ..|..|.+.+++..+ ++...+.+..
T Consensus 21 ~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl-----------~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp 89 (356)
T PRK11650 21 KGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL-----------ERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYP 89 (356)
T ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCC-----------CCCCceEEEECCEECCCCCHHHCCEEEEeCCccccC
Confidence 368899999999999999999999999999997 345556666555221 1222233332
Q ss_pred Ccc--ccccchhhH-----HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eC
Q 011082 366 GAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NK 434 (494)
Q Consensus 366 ~a~--~~~~L~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NK 434 (494)
... ++..++... .....+++-++-.+++.+..+......+..+.+.+ .+..+|...|.++++ +-
T Consensus 90 ~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRv-----alARAL~~~P~llLLDEP~s~ 164 (356)
T PRK11650 90 HMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRV-----AMGRAIVREPAVFLFDEPLSN 164 (356)
T ss_pred CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHH-----HHHHHHhcCCCEEEEeCCccc
Confidence 111 111111000 00012223333334443322222223444444443 344567789999998 78
Q ss_pred CCcCChHHHHHHHHHHcC--CCCEEEEEc
Q 011082 435 IDEDGAEEVYEELERRVQ--GVPIYPVCA 461 (494)
Q Consensus 435 iDl~~~~e~~~~L~~~~~--~~~ii~ISA 461 (494)
+|......+.+.|++... +.+++.+|+
T Consensus 165 LD~~~r~~l~~~l~~l~~~~g~tii~vTH 193 (356)
T PRK11650 165 LDAKLRVQMRLEIQRLHRRLKTTSLYVTH 193 (356)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 887777776666665542 567777775
No 372
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=1.4e-07 Score=92.60 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=31.4
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|++..+..++|+|++|||||||++.|+|.
T Consensus 18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 18 LFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567899999999999999999999999999997
No 373
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.53 E-value=1.6e-07 Score=90.41 Aligned_cols=31 Identities=35% Similarity=0.544 Sum_probs=29.7
Q ss_pred EEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 298 ELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 298 ~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.++|++.. ..++|+|++|||||||++.|++.
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCC
Confidence 78899999 99999999999999999999997
No 374
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=6.2e-07 Score=90.85 Aligned_cols=131 Identities=21% Similarity=0.329 Sum_probs=88.6
Q ss_pred EeeccceeeeeCCCCCcHHHHHHHHHcCCC---Ccccccceee------cceeeEEe-----e-----------------
Q 011082 302 ELKSIADVGLVGMPSAGKSTLLGAISRAKP---AVGHYSFTTL------RPNLGNMN-----F----------------- 350 (494)
Q Consensus 302 elk~~~~V~LVG~~nAGKSTLLn~Lt~~~~---~i~~~~ftTl------~p~~g~v~-----~----------------- 350 (494)
++..-+.|.++|.-..||||+|+.|+.... .++..|.|-. .+..+++. .
T Consensus 54 dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afl 133 (532)
T KOG1954|consen 54 DFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFL 133 (532)
T ss_pred ccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHH
Confidence 355667899999999999999999987632 1222221100 00011100 0
Q ss_pred --------cC---cceEEecCCCccCCccccccchhhHHH----HHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHH
Q 011082 351 --------DD---IQITVADIPGLIKGAHENRGLGHAFLR----HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIE 415 (494)
Q Consensus 351 --------~~---~~~~l~DtPGli~~a~~~~~L~~~fl~----~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~e 415 (494)
++ .++.++||||+.++..+....+..|.. .+++||.|++++|... .+....++.++..
T Consensus 134 nRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hK-------LDIsdEf~~vi~a 206 (532)
T KOG1954|consen 134 NRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHK-------LDISDEFKRVIDA 206 (532)
T ss_pred HHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhh-------ccccHHHHHHHHH
Confidence 00 268999999999987765555555533 3579999999999875 3556777888777
Q ss_pred HHhhhcccCCCCEEEEEeCCCcCChHHHH
Q 011082 416 LEHHQEGLSDRPSLVVANKIDEDGAEEVY 444 (494)
Q Consensus 416 L~~~~~~l~~~P~IlVlNKiDl~~~~e~~ 444 (494)
|... ...+-||+||.|.++.++.+
T Consensus 207 LkG~-----EdkiRVVLNKADqVdtqqLm 230 (532)
T KOG1954|consen 207 LKGH-----EDKIRVVLNKADQVDTQQLM 230 (532)
T ss_pred hhCC-----cceeEEEeccccccCHHHHH
Confidence 7643 45677889999999887644
No 375
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.53 E-value=2.8e-07 Score=87.06 Aligned_cols=33 Identities=30% Similarity=0.301 Sum_probs=30.8
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||+++|++.
T Consensus 9 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 9 KGLNFAAERGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 467889999999999999999999999999997
No 376
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.52 E-value=1.4e-07 Score=94.16 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=31.3
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 24 DNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 568899999999999999999999999999997
No 377
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.52 E-value=4.2e-07 Score=88.29 Aligned_cols=33 Identities=30% Similarity=0.438 Sum_probs=30.9
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 27 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 27 TGVELVVKRGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 467889999999999999999999999999997
No 378
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.52 E-value=1.2e-07 Score=91.58 Aligned_cols=34 Identities=32% Similarity=0.284 Sum_probs=31.6
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|++..+..++|+|++|||||||++.|++.
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3578899999999999999999999999999997
No 379
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.52 E-value=4.3e-07 Score=94.26 Aligned_cols=149 Identities=22% Similarity=0.231 Sum_probs=85.4
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce-----------EEecCCCccC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGLIK 365 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~-----------~l~DtPGli~ 365 (494)
..++|++..+..++|+|++|||||||++.|+|. ..|..|.+.+++..+ ++.+.+.++.
T Consensus 23 ~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl-----------~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp 91 (351)
T PRK11432 23 DNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGL-----------EKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFP 91 (351)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCC-----------CCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCC
Confidence 468899999999999999999999999999998 345566666555211 2233344433
Q ss_pred Ccc--ccccchhhH-----HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eC
Q 011082 366 GAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NK 434 (494)
Q Consensus 366 ~a~--~~~~L~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NK 434 (494)
... ++..++..+ ....++++-++..+++.+..+......+..+.+.+ .+..+|...|.++++ +-
T Consensus 92 ~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRV-----aLARaL~~~P~lLLLDEP~s~ 166 (351)
T PRK11432 92 HMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRV-----ALARALILKPKVLLFDEPLSN 166 (351)
T ss_pred CCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH-----HHHHHHHcCCCEEEEcCCccc
Confidence 211 111111110 00112333333334443322222223444444443 334566788999998 77
Q ss_pred CCcCChHHHHHHHHHHcC--CCCEEEEEc
Q 011082 435 IDEDGAEEVYEELERRVQ--GVPIYPVCA 461 (494)
Q Consensus 435 iDl~~~~e~~~~L~~~~~--~~~ii~ISA 461 (494)
+|.....++...|++... +.+++.+|+
T Consensus 167 LD~~~r~~l~~~l~~l~~~~g~tii~vTH 195 (351)
T PRK11432 167 LDANLRRSMREKIRELQQQFNITSLYVTH 195 (351)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 887777776666665542 556776764
No 380
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=4e-07 Score=94.20 Aligned_cols=124 Identities=23% Similarity=0.366 Sum_probs=86.6
Q ss_pred eeeeeCCCCCcHHHHHHHHHcC----------C------CCccc------ccceeecceeeEEeecCcceEEecCCCccC
Q 011082 308 DVGLVGMPSAGKSTLLGAISRA----------K------PAVGH------YSFTTLRPNLGNMNFDDIQITVADIPGLIK 365 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~----------~------~~i~~------~~ftTl~p~~g~v~~~~~~~~l~DtPGli~ 365 (494)
+.+||-.|.||||||-..|.-- + ...++ ..+.++...+-.+.|.+..+.+.||||+.+
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD 93 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED 93 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccc
Confidence 6899999999999999887411 0 01111 122333344556677889999999999876
Q ss_pred CccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChH--HH
Q 011082 366 GAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE--EV 443 (494)
Q Consensus 366 ~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~--e~ 443 (494)
+.....+.+-.+|..|+|+|+.... ..+..+++.-. .+...|++-.+||+|....+ ++
T Consensus 94 -------FSEDTYRtLtAvDsAvMVIDaAKGi--------E~qT~KLfeVc-----rlR~iPI~TFiNKlDR~~rdP~EL 153 (528)
T COG4108 94 -------FSEDTYRTLTAVDSAVMVIDAAKGI--------EPQTLKLFEVC-----RLRDIPIFTFINKLDREGRDPLEL 153 (528)
T ss_pred -------cchhHHHHHHhhheeeEEEecccCc--------cHHHHHHHHHH-----hhcCCceEEEeeccccccCChHHH
Confidence 5556677888899999999998742 23344444332 23589999999999987653 66
Q ss_pred HHHHHHHc
Q 011082 444 YEELERRV 451 (494)
Q Consensus 444 ~~~L~~~~ 451 (494)
++++.+.+
T Consensus 154 LdEiE~~L 161 (528)
T COG4108 154 LDEIEEEL 161 (528)
T ss_pred HHHHHHHh
Confidence 77777665
No 381
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.51 E-value=1.4e-07 Score=86.31 Aligned_cols=54 Identities=26% Similarity=0.423 Sum_probs=42.8
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCc
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGL 363 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGl 363 (494)
..|+++|.||+|||||+|+|.+... .+++++.+|..... +.. +..+.++||||+
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~liDtPGi 157 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQY--ITL-MKRIYLIDCPGV 157 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEE--EEc-CCCEEEEECcCC
Confidence 3689999999999999999998754 67888888876432 333 246899999995
No 382
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.51 E-value=4.1e-07 Score=90.83 Aligned_cols=149 Identities=22% Similarity=0.281 Sum_probs=90.9
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCC--------------
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPG-------------- 362 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPG-------------- 362 (494)
..++|+++.+...|+||++|||||||++++... -.|+.|.+.+++..+.-.+-.+
T Consensus 23 ~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~L-----------e~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQh 91 (339)
T COG1135 23 DDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLL-----------ERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQH 91 (339)
T ss_pred ccceEEEcCCcEEEEEcCCCCcHHHHHHHHhcc-----------CCCCCceEEEcCEecccCChHHHHHHHhhccEEecc
Confidence 458899999999999999999999999999987 4577788777774332222211
Q ss_pred --ccCCcc--ccccchhhH-----HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE-
Q 011082 363 --LIKGAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA- 432 (494)
Q Consensus 363 --li~~a~--~~~~L~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl- 432 (494)
+..... +|.-+.... -+.-.+..-++.++.+++..+..+...+..+ ++....+++|+..|.|++.
T Consensus 92 FnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQ-----KQRVaIARALa~~P~iLL~D 166 (339)
T COG1135 92 FNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQ-----KQRVAIARALANNPKILLCD 166 (339)
T ss_pred ccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcch-----hhHHHHHHHHhcCCCEEEec
Confidence 111100 111111000 0112334455666666664443333333333 3444556788899999986
Q ss_pred ---eCCCcCChHHHHHHHHHHc--CCCCEEEEEc
Q 011082 433 ---NKIDEDGAEEVYEELERRV--QGVPIYPVCA 461 (494)
Q Consensus 433 ---NKiDl~~~~e~~~~L~~~~--~~~~ii~ISA 461 (494)
.-+|......+++.|++.. -+.+++.|++
T Consensus 167 EaTSALDP~TT~sIL~LL~~In~~lglTIvlITH 200 (339)
T COG1135 167 EATSALDPETTQSILELLKDINRELGLTIVLITH 200 (339)
T ss_pred CccccCChHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 5566655666776666554 4678888875
No 383
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.50 E-value=1.7e-07 Score=93.35 Aligned_cols=34 Identities=35% Similarity=0.439 Sum_probs=31.5
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|++..+..++|+|++|||||||+++|++.
T Consensus 27 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3568899999999999999999999999999997
No 384
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.50 E-value=2.8e-07 Score=95.47 Aligned_cols=149 Identities=20% Similarity=0.266 Sum_probs=80.8
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce----------------EEecC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI----------------TVADI 360 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~----------------~l~Dt 360 (494)
..++|+++.+..++|+|++|||||||++.|++. +.|..|.+.+++..+ ++...
T Consensus 22 ~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~ 90 (343)
T PRK11153 22 NNVSLHIPAGEIFGVIGASGAGKSTLIRCINLL-----------ERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQH 90 (343)
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCC
Confidence 478899999999999999999999999999997 334455555444211 11222
Q ss_pred CCccCCcc--ccccchhhH-----HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE-
Q 011082 361 PGLIKGAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA- 432 (494)
Q Consensus 361 PGli~~a~--~~~~L~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl- 432 (494)
+.+..... ++..+...+ ....+.++-++-.+++.+..+......+..+.+.+ .+..++...|.|+++
T Consensus 91 ~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv-----~lAraL~~~p~iLlLD 165 (343)
T PRK11153 91 FNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRV-----AIARALASNPKVLLCD 165 (343)
T ss_pred CccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH-----HHHHHHHcCCCEEEEe
Confidence 22222111 111010000 00011222223333333221211122344444443 334456688999998
Q ss_pred ---eCCCcCChHHHHHHHHHHcC--CCCEEEEEc
Q 011082 433 ---NKIDEDGAEEVYEELERRVQ--GVPIYPVCA 461 (494)
Q Consensus 433 ---NKiDl~~~~e~~~~L~~~~~--~~~ii~ISA 461 (494)
+-+|......+.+.|.+... +..++.+|+
T Consensus 166 EPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH 199 (343)
T PRK11153 166 EATSALDPATTRSILELLKDINRELGLTIVLITH 199 (343)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 78888777777777766542 455665554
No 385
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.50 E-value=2.4e-07 Score=90.85 Aligned_cols=33 Identities=36% Similarity=0.491 Sum_probs=30.9
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||+++|++.
T Consensus 19 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 19 KNINLNINPGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 467889999999999999999999999999997
No 386
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=1.1e-06 Score=86.86 Aligned_cols=161 Identities=21% Similarity=0.237 Sum_probs=100.5
Q ss_pred eccceeeeeCCCCCcHHHHHHHHHcCCC-----C------cc-----cccceeecceeeEEeecCcceEEecCCCccCCc
Q 011082 304 KSIADVGLVGMPSAGKSTLLGAISRAKP-----A------VG-----HYSFTTLRPNLGNMNFDDIQITVADIPGLIKGA 367 (494)
Q Consensus 304 k~~~~V~LVG~~nAGKSTLLn~Lt~~~~-----~------i~-----~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a 367 (494)
+..-+|+.+|.-+.|||||..+|+..-. . +. .....|+.+..-.+...++.+..+|+||.-+
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD-- 87 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD-- 87 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH--
Confidence 3445799999999999999999975311 0 11 1123455554444555568899999999865
Q ss_pred cccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEE-EeCCCcCChHHHHHH
Q 011082 368 HENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV-ANKIDEDGAEEVYEE 446 (494)
Q Consensus 368 ~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlV-lNKiDl~~~~e~~~~ 446 (494)
+...++......|..|+|+.+.+. +-|...-..++.. ....|.|+| +||+|+.+..+.++.
T Consensus 88 -----YvKNMItgAaqmDgAILVVsA~dG------pmPqTrEHiLlar-------qvGvp~ivvflnK~Dmvdd~ellel 149 (394)
T COG0050 88 -----YVKNMITGAAQMDGAILVVAATDG------PMPQTREHILLAR-------QVGVPYIVVFLNKVDMVDDEELLEL 149 (394)
T ss_pred -----HHHHHhhhHHhcCccEEEEEcCCC------CCCcchhhhhhhh-------hcCCcEEEEEEecccccCcHHHHHH
Confidence 566677777788999999998874 2232222222111 125666655 499999985543322
Q ss_pred ----HHHH---c----CCCCEEEEEcccC-C-------CHHHHHHHHHHHhcccCCc
Q 011082 447 ----LERR---V----QGVPIYPVCAVLE-E-------GVPELKVGLRMLVNGEKSE 484 (494)
Q Consensus 447 ----L~~~---~----~~~~ii~ISA~~g-~-------gI~~L~~~I~~~l~~~~~~ 484 (494)
++++ + ...|++.-||+.- + -|.+|++.+..++..-.++
T Consensus 150 VemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~ 206 (394)
T COG0050 150 VEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERD 206 (394)
T ss_pred HHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCc
Confidence 2222 2 2457777776542 2 2577777777777655443
No 387
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.49 E-value=2e-07 Score=90.81 Aligned_cols=32 Identities=34% Similarity=0.417 Sum_probs=30.8
Q ss_pred EEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 298 ELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 298 ~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
.++|++..+..++|+|++|||||||++.|++.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999999999999997
No 388
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.49 E-value=1.7e-07 Score=90.85 Aligned_cols=34 Identities=35% Similarity=0.426 Sum_probs=31.4
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|++..+..++|+|++|+|||||++.|++.
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999999999999997
No 389
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.49 E-value=4.3e-07 Score=94.95 Aligned_cols=149 Identities=22% Similarity=0.214 Sum_probs=81.4
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce-----------EEecCCCccC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGLIK 365 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~-----------~l~DtPGli~ 365 (494)
..++|++..+..++|+|++|||||||++.|++. +.|..|.+.+++..+ ++.+.+.+..
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl-----------~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~ 88 (369)
T PRK11000 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL-----------EDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYP 88 (369)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCC
Confidence 468899999999999999999999999999997 334455555544211 1222222222
Q ss_pred Ccc--ccccchhhH-----HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eC
Q 011082 366 GAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NK 434 (494)
Q Consensus 366 ~a~--~~~~L~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NK 434 (494)
... ++..++... ....++++-++-.+.+.+..+......+..+.+.+ .+..+|...|.++++ +-
T Consensus 89 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRv-----aLAraL~~~P~lLLLDEPts~ 163 (369)
T PRK11000 89 HLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRV-----AIGRTLVAEPSVFLLDEPLSN 163 (369)
T ss_pred CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHH-----HHHHHHhcCCCEEEEeCCccc
Confidence 111 111111000 00011222223333333221211122344444443 334566788999998 78
Q ss_pred CCcCChHHHHHHHHHHcC--CCCEEEEEc
Q 011082 435 IDEDGAEEVYEELERRVQ--GVPIYPVCA 461 (494)
Q Consensus 435 iDl~~~~e~~~~L~~~~~--~~~ii~ISA 461 (494)
+|......+.+.|++... +..++.+|+
T Consensus 164 LD~~~~~~l~~~L~~l~~~~g~tvI~vTH 192 (369)
T PRK11000 164 LDAALRVQMRIEISRLHKRLGRTMIYVTH 192 (369)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCEEEEEeC
Confidence 887777776666666542 456776664
No 390
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.48 E-value=1.4e-07 Score=89.01 Aligned_cols=54 Identities=30% Similarity=0.314 Sum_probs=44.2
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCC---------CCcccccceeecceeeEEeecCcceEEecCCCc
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAK---------PAVGHYSFTTLRPNLGNMNFDDIQITVADIPGL 363 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~---------~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGl 363 (494)
..++++|.+|+|||||+|+|.+.. +.++..++||.++....+. ..+.++||||+
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---~~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG---NGKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC---CCCEEEeCcCC
Confidence 368999999999999999998742 3567888999988765553 26899999996
No 391
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.48 E-value=5.1e-07 Score=93.78 Aligned_cols=149 Identities=23% Similarity=0.232 Sum_probs=85.6
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce-----------EEecCCCccC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGLIK 365 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~-----------~l~DtPGli~ 365 (494)
..++|++..+..++|+|++||||||||+.|+|. ..|..|.+.+++..+ ++.+-+.++.
T Consensus 21 ~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp 89 (353)
T TIGR03265 21 KDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL-----------ERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFP 89 (353)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCC-----------CCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCC
Confidence 368899999999999999999999999999997 345566666655221 2223333332
Q ss_pred Ccc--ccccchhhH-----HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eC
Q 011082 366 GAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NK 434 (494)
Q Consensus 366 ~a~--~~~~L~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NK 434 (494)
..+ ++..++... .....+++-++-.+++.+..+......+..+.+.+ .+..+|...|.++++ +-
T Consensus 90 ~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRv-----aLARaL~~~P~llLLDEP~s~ 164 (353)
T TIGR03265 90 NLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRV-----ALARALATSPGLLLLDEPLSA 164 (353)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHH-----HHHHHHhcCCCEEEEcCCccc
Confidence 211 111111100 00112333444444554422222222344444333 344567789999998 67
Q ss_pred CCcCChHHHHHHHHHHcC--CCCEEEEEc
Q 011082 435 IDEDGAEEVYEELERRVQ--GVPIYPVCA 461 (494)
Q Consensus 435 iDl~~~~e~~~~L~~~~~--~~~ii~ISA 461 (494)
+|......+.+.|++... +.+++.+|+
T Consensus 165 LD~~~r~~l~~~L~~l~~~~~~tvi~vTH 193 (353)
T TIGR03265 165 LDARVREHLRTEIRQLQRRLGVTTIMVTH 193 (353)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 777666666666666542 556777764
No 392
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.48 E-value=2.6e-07 Score=91.04 Aligned_cols=33 Identities=33% Similarity=0.428 Sum_probs=30.8
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 20 HGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 467889999999999999999999999999997
No 393
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.48 E-value=2.2e-07 Score=91.22 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=31.2
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 18 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 18 NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 568899999999999999999999999999997
No 394
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.48 E-value=1.4e-07 Score=88.46 Aligned_cols=136 Identities=22% Similarity=0.263 Sum_probs=77.6
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchh
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGH 375 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~ 375 (494)
-..++|++..+..++|+|++|+|||||++.|++. +.|..|.+.+++..+.-.+..-. ....++..
T Consensus 15 l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~-----------~~~~~G~v~~~g~~~~~~~~~~~----~~~i~~~~ 79 (180)
T cd03214 15 LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGL-----------LKPSSGEILLDGKDLASLSPKEL----ARKIAYVP 79 (180)
T ss_pred EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCcCCHHHH----HHHHhHHH
Confidence 3467899999999999999999999999999997 45777888877643321111000 00001111
Q ss_pred hHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eCCCcCChHHHHHHHHHHc
Q 011082 376 AFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVYEELERRV 451 (494)
Q Consensus 376 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NKiDl~~~~e~~~~L~~~~ 451 (494)
++ ++.. .+.+.........+..+.+.+. +..++...|.++++ +.+|....+.+.+.+.+..
T Consensus 80 q~---l~~~-------gl~~~~~~~~~~LS~G~~qrl~-----laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~ 144 (180)
T cd03214 80 QA---LELL-------GLAHLADRPFNELSGGERQRVL-----LARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLA 144 (180)
T ss_pred HH---HHHc-------CCHhHhcCCcccCCHHHHHHHH-----HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 11 1111 1111000001123444444433 23355678999988 7888777777667666654
Q ss_pred C--CCCEEEEEc
Q 011082 452 Q--GVPIYPVCA 461 (494)
Q Consensus 452 ~--~~~ii~ISA 461 (494)
. +..++.+|+
T Consensus 145 ~~~~~tiii~sh 156 (180)
T cd03214 145 RERGKTVVMVLH 156 (180)
T ss_pred HhcCCEEEEEeC
Confidence 3 445555553
No 395
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.48 E-value=2e-07 Score=96.90 Aligned_cols=148 Identities=19% Similarity=0.220 Sum_probs=79.3
Q ss_pred EEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce-----------------EEecC
Q 011082 298 ELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------------TVADI 360 (494)
Q Consensus 298 ~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~-----------------~l~Dt 360 (494)
.++|++..+..++|+|++|||||||+++|++.. .|..|.+.+++..+ ++.+.
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~-----------~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~ 83 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLT-----------RPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQE 83 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCceEEEECCEECccCccccccchhhCCeEEEecC
Confidence 788999999999999999999999999999973 23334443333111 22233
Q ss_pred CCccCCcc--ccccchhhH---HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE---
Q 011082 361 PGLIKGAH--ENRGLGHAF---LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA--- 432 (494)
Q Consensus 361 PGli~~a~--~~~~L~~~f---l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl--- 432 (494)
+.+..... ++..++... ......++-++-.+++.+..+......+..+.+.+ .+..++...|.++++
T Consensus 84 ~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRv-----alAraL~~~p~lllLDEP 158 (354)
T TIGR02142 84 ARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRV-----AIGRALLSSPRLLLMDEP 158 (354)
T ss_pred CccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHH-----HHHHHHHcCCCEEEEcCC
Confidence 33332211 111110000 00011122222223332211111112334444333 334456788999998
Q ss_pred -eCCCcCChHHHHHHHHHHcC--CCCEEEEEc
Q 011082 433 -NKIDEDGAEEVYEELERRVQ--GVPIYPVCA 461 (494)
Q Consensus 433 -NKiDl~~~~e~~~~L~~~~~--~~~ii~ISA 461 (494)
+-+|......+.+.|.+... +..++.+|+
T Consensus 159 ts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH 190 (354)
T TIGR02142 159 LAALDDPRKYEILPYLERLHAEFGIPILYVSH 190 (354)
T ss_pred CcCCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 88888777777777766542 455666664
No 396
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.48 E-value=2.3e-07 Score=90.83 Aligned_cols=33 Identities=30% Similarity=0.417 Sum_probs=31.1
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 18 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 18 HNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 468899999999999999999999999999997
No 397
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.48 E-value=2.2e-07 Score=90.03 Aligned_cols=155 Identities=28% Similarity=0.366 Sum_probs=87.5
Q ss_pred CCCCceeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceE--------------
Q 011082 291 GEPGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQIT-------------- 356 (494)
Q Consensus 291 g~~ge~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~-------------- 356 (494)
|.-.--..++|++..+..++||||||||||||+|.||+. +.|+.|.+.+.+..+.
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~-----------~~P~~G~v~~~G~~it~l~p~~iar~Gi~R 83 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGF-----------YKPSSGTVIFRGRDITGLPPHRIARLGIAR 83 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccc-----------ccCCCceEEECCcccCCCCHHHHHhcccee
Confidence 433344578999999999999999999999999999997 5666677766653110
Q ss_pred EecCCCccCCcc--ccccch-----------------hhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHH
Q 011082 357 VADIPGLIKGAH--ENRGLG-----------------HAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELE 417 (494)
Q Consensus 357 l~DtPGli~~a~--~~~~L~-----------------~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~ 417 (494)
-+.++-+..+.+ +|.-++ +......++|..+|-.+++.+..+...+..++.+.+.+
T Consensus 84 TFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~L----- 158 (250)
T COG0411 84 TFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRL----- 158 (250)
T ss_pred ecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHH-----
Confidence 011111111111 010000 01122345566667777776654444444555555443
Q ss_pred hhhcccCCCCEEEEE----eCCCcCChHHHHHHHHHHc--CCCCEEEEEc
Q 011082 418 HHQEGLSDRPSLVVA----NKIDEDGAEEVYEELERRV--QGVPIYPVCA 461 (494)
Q Consensus 418 ~~~~~l~~~P~IlVl----NKiDl~~~~e~~~~L~~~~--~~~~ii~ISA 461 (494)
..+.+|+..|.++++ -.+...+.+++.+.|.+.. .+..++.|-+
T Consensus 159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEH 208 (250)
T COG0411 159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEH 208 (250)
T ss_pred HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 334567889999995 2222222334455555544 2355655543
No 398
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.48 E-value=3.5e-07 Score=91.40 Aligned_cols=33 Identities=30% Similarity=0.502 Sum_probs=31.2
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||+++|++.
T Consensus 41 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl 73 (269)
T cd03294 41 NDVSLDVREGEIFVIMGLSGSGKSTLLRCINRL 73 (269)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 568899999999999999999999999999997
No 399
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.48 E-value=6e-07 Score=88.86 Aligned_cols=147 Identities=22% Similarity=0.234 Sum_probs=78.1
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCc-ce-EEecCCCccCCccccccc
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI-QI-TVADIPGLIKGAHENRGL 373 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~-~~-~l~DtPGli~~a~~~~~L 373 (494)
-..++|++..+..++|+|++|||||||++.|++. +.|..|.+.+++. .+ ++...+.+....... +
T Consensus 20 l~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl-----------~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~--~ 86 (251)
T PRK09544 20 LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGL-----------VAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLT--V 86 (251)
T ss_pred EEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCccCEEEeccccccccccChh--H
Confidence 3468899999999999999999999999999997 3455566655541 11 222223322110000 0
Q ss_pred hhhHHHH-----HHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eCCCcCChHHHH
Q 011082 374 GHAFLRH-----IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVY 444 (494)
Q Consensus 374 ~~~fl~~-----i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NKiDl~~~~e~~ 444 (494)
..++.. .+.+..++-.+++.+..+......+..+.+.+ .+..++...|.++++ +.+|......+.
T Consensus 87 -~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv-----~laral~~~p~lllLDEPt~~LD~~~~~~l~ 160 (251)
T PRK09544 87 -NRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRV-----LLARALLNRPQLLVLDEPTQGVDVNGQVALY 160 (251)
T ss_pred -HHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHH-----HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH
Confidence 000000 00111111112222111111112333333333 333456678999998 888887777766
Q ss_pred HHHHHHcC--CCCEEEEEc
Q 011082 445 EELERRVQ--GVPIYPVCA 461 (494)
Q Consensus 445 ~~L~~~~~--~~~ii~ISA 461 (494)
+.|.+... +..++.+|+
T Consensus 161 ~~L~~~~~~~g~tiiivsH 179 (251)
T PRK09544 161 DLIDQLRRELDCAVLMVSH 179 (251)
T ss_pred HHHHHHHHhcCCEEEEEec
Confidence 66665542 455666654
No 400
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.47 E-value=4.1e-07 Score=84.72 Aligned_cols=47 Identities=28% Similarity=0.393 Sum_probs=39.4
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCc
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI 353 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~ 353 (494)
-..++|++..+..++|+|++|||||||++.|++. +.|..|.+.+++.
T Consensus 16 l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~-----------~~~~~G~i~~~g~ 62 (173)
T cd03230 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGL-----------LKPDSGEIKVLGK 62 (173)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCE
Confidence 3568899999999999999999999999999997 3456677776663
No 401
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.47 E-value=7e-07 Score=92.38 Aligned_cols=150 Identities=19% Similarity=0.241 Sum_probs=83.3
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce----------------EEec
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI----------------TVAD 359 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~----------------~l~D 359 (494)
-..++|++..+..++|+|++|||||||+++|++. +.|+.|.+.+++..+ ++..
T Consensus 21 L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl-----------~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q 89 (343)
T TIGR02314 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL-----------ERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQ 89 (343)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEECCcCCHHHHHHHhcCEEEEEC
Confidence 3578899999999999999999999999999997 345555555554221 1112
Q ss_pred CCCccCCcc--ccccchhhH-----HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE
Q 011082 360 IPGLIKGAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 432 (494)
Q Consensus 360 tPGli~~a~--~~~~L~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl 432 (494)
.+.+..... ++..+.... ....+++.-++-.+.+.+..+......+..+.+.+ .+..+|...|.++++
T Consensus 90 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV-----~IARAL~~~P~iLLl 164 (343)
T TIGR02314 90 HFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRV-----AIARALASNPKVLLC 164 (343)
T ss_pred CccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH-----HHHHHHHhCCCEEEE
Confidence 222221111 111010000 00011222223333443322222223444444443 344567789999998
Q ss_pred ----eCCCcCChHHHHHHHHHHcC--CCCEEEEEc
Q 011082 433 ----NKIDEDGAEEVYEELERRVQ--GVPIYPVCA 461 (494)
Q Consensus 433 ----NKiDl~~~~e~~~~L~~~~~--~~~ii~ISA 461 (494)
+-+|......+++.|++... +.+++.+|+
T Consensus 165 DEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH 199 (343)
T TIGR02314 165 DEATSALDPATTQSILELLKEINRRLGLTILLITH 199 (343)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 78887777777777776542 556666664
No 402
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=2.2e-07 Score=91.79 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=31.2
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 22 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred EeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 478899999999999999999999999999997
No 403
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.47 E-value=3.5e-07 Score=88.74 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=31.9
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAK 330 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~ 330 (494)
-..++|++..+..++|+|++|||||||++.|++..
T Consensus 16 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 35688999999999999999999999999999973
No 404
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.47 E-value=5.8e-07 Score=93.66 Aligned_cols=150 Identities=18% Similarity=0.202 Sum_probs=86.0
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeeccee--eEEeecCcce-----------EEecCCC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNL--GNMNFDDIQI-----------TVADIPG 362 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~--g~v~~~~~~~-----------~l~DtPG 362 (494)
-..++|++..+..++|+|++||||||||+.|++. ..|.. |.+.+++..+ ++.+-+.
T Consensus 21 l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl-----------~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~ 89 (362)
T TIGR03258 21 LDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGF-----------VKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYA 89 (362)
T ss_pred EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcc
Confidence 3568899999999999999999999999999997 33444 5555554211 2223333
Q ss_pred ccCCcc--ccccchhhH-----HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE---
Q 011082 363 LIKGAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA--- 432 (494)
Q Consensus 363 li~~a~--~~~~L~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl--- 432 (494)
+..... ++..++... ...-.+++-++-.+.+.+..+......+..+.+.+ .+..+|...|.++++
T Consensus 90 l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRv-----aLARAL~~~P~llLLDEP 164 (362)
T TIGR03258 90 LFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRI-----AIARAIAIEPDVLLLDEP 164 (362)
T ss_pred cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHH-----HHHHHHhcCCCEEEEcCc
Confidence 332211 111111000 00112233344445554432222223444444433 344567789999998
Q ss_pred -eCCCcCChHHHHHHHHHHcC---CCCEEEEEc
Q 011082 433 -NKIDEDGAEEVYEELERRVQ---GVPIYPVCA 461 (494)
Q Consensus 433 -NKiDl~~~~e~~~~L~~~~~---~~~ii~ISA 461 (494)
+-+|.....++.+.|.+... +.+++.+|+
T Consensus 165 ~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTH 197 (362)
T TIGR03258 165 LSALDANIRANMREEIAALHEELPELTILCVTH 197 (362)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 78887777777776666542 456777764
No 405
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.46 E-value=3.6e-07 Score=90.52 Aligned_cols=34 Identities=29% Similarity=0.310 Sum_probs=31.6
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|++..+..++|+|++|||||||++.|++.
T Consensus 17 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (256)
T TIGR03873 17 VDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGA 50 (256)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 3578899999999999999999999999999997
No 406
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.46 E-value=2.4e-07 Score=90.79 Aligned_cols=33 Identities=30% Similarity=0.358 Sum_probs=31.1
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 20 ~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 20 EDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 468899999999999999999999999999997
No 407
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.46 E-value=5.8e-07 Score=93.41 Aligned_cols=150 Identities=19% Similarity=0.195 Sum_probs=82.0
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce-----------EEecCCCcc
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGLI 364 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~-----------~l~DtPGli 364 (494)
-..++|++..+..++|+|++|||||||++.|++. +.|..|.+.+++..+ ++...+.+.
T Consensus 18 l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~ 86 (353)
T PRK10851 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGL-----------EHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALF 86 (353)
T ss_pred EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCCCCHHHCCEEEEecCcccC
Confidence 3468899999999999999999999999999997 234444444443211 122223332
Q ss_pred CCcc--ccccchhh---------HHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE-
Q 011082 365 KGAH--ENRGLGHA---------FLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA- 432 (494)
Q Consensus 365 ~~a~--~~~~L~~~---------fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl- 432 (494)
.... ++..++.. .....++++-++-.+.+.+..+......+..+.+.+ .+..+|...|.++++
T Consensus 87 p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRv-----alArAL~~~P~llLLD 161 (353)
T PRK10851 87 RHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRV-----ALARALAVEPQILLLD 161 (353)
T ss_pred CCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH-----HHHHHHhcCCCEEEEe
Confidence 2111 11111100 000112223333333443322222222334443333 344567789999998
Q ss_pred ---eCCCcCChHHHHHHHHHHcC--CCCEEEEEc
Q 011082 433 ---NKIDEDGAEEVYEELERRVQ--GVPIYPVCA 461 (494)
Q Consensus 433 ---NKiDl~~~~e~~~~L~~~~~--~~~ii~ISA 461 (494)
+-+|......+.+.|.+... +..++.+|+
T Consensus 162 EP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTH 195 (353)
T PRK10851 162 EPFGALDAQVRKELRRWLRQLHEELKFTSVFVTH 195 (353)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 77887777766666666542 456666664
No 408
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.46 E-value=1e-06 Score=91.72 Aligned_cols=150 Identities=17% Similarity=0.170 Sum_probs=88.1
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcc-----------------eEEe
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ-----------------ITVA 358 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~-----------------~~l~ 358 (494)
-..++|++..+..++|+|++|||||||+++|++. +.|+.|.+.+++.. .++.
T Consensus 9 l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl-----------~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~ 77 (363)
T TIGR01186 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRL-----------IEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVF 77 (363)
T ss_pred EEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCC-----------CCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEE
Confidence 4578999999999999999999999999999998 44556666655521 1233
Q ss_pred cCCCccCCcc--ccccchhhH-----HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEE
Q 011082 359 DIPGLIKGAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 431 (494)
Q Consensus 359 DtPGli~~a~--~~~~L~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlV 431 (494)
+.+++..... ++..++..+ ....+++.-++-.+++....+......+..+.+.+ .+..+|...|.|++
T Consensus 78 Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV-----~lARAL~~~p~iLL 152 (363)
T TIGR01186 78 QQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRV-----GLARALAAEPDILL 152 (363)
T ss_pred CCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHH-----HHHHHHhcCCCEEE
Confidence 4445543212 111111111 01112333334444554322222223444444443 33456678899999
Q ss_pred E----eCCCcCChHHHHHHHHHHc--CCCCEEEEEc
Q 011082 432 A----NKIDEDGAEEVYEELERRV--QGVPIYPVCA 461 (494)
Q Consensus 432 l----NKiDl~~~~e~~~~L~~~~--~~~~ii~ISA 461 (494)
+ +-+|......+.+.+.+.. .+..+|++|+
T Consensus 153 lDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTH 188 (363)
T TIGR01186 153 MDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITH 188 (363)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 8 7788777777776666543 2456777775
No 409
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.46 E-value=2.5e-07 Score=90.61 Aligned_cols=33 Identities=27% Similarity=0.371 Sum_probs=31.0
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 38 ~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 38 KGISFTIEKGEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999999999999997
No 410
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=5.9e-07 Score=90.30 Aligned_cols=150 Identities=19% Similarity=0.264 Sum_probs=80.5
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce-------------EEecCC-
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-------------TVADIP- 361 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~-------------~l~DtP- 361 (494)
-..++|++..+..++|+|++|||||||++.|++. +.|..|.+.+++..+ ++...|
T Consensus 23 l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~-----------~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~ 91 (279)
T PRK13635 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL-----------LLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPD 91 (279)
T ss_pred eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHH
Confidence 4578899999999999999999999999999997 334455555544211 111111
Q ss_pred CccCC--ccccccchhh----H-HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE--
Q 011082 362 GLIKG--AHENRGLGHA----F-LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA-- 432 (494)
Q Consensus 362 Gli~~--a~~~~~L~~~----f-l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl-- 432 (494)
.++.. ..++..+... . ....+.++-++..+++.+..+......+..+.+.+ .+..++...|.|+++
T Consensus 92 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv-----~laral~~~p~lllLDE 166 (279)
T PRK13635 92 NQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRV-----AIAGVLALQPDIIILDE 166 (279)
T ss_pred HhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHH-----HHHHHHHcCCCEEEEeC
Confidence 11110 0011000000 0 00011222223333333222211122334443333 334456789999998
Q ss_pred --eCCCcCChHHHHHHHHHHcC--CCCEEEEEc
Q 011082 433 --NKIDEDGAEEVYEELERRVQ--GVPIYPVCA 461 (494)
Q Consensus 433 --NKiDl~~~~e~~~~L~~~~~--~~~ii~ISA 461 (494)
+.+|......+.+.|.+... +..++.+|+
T Consensus 167 Pt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH 199 (279)
T PRK13635 167 ATSMLDPRGRREVLETVRQLKEQKGITVLSITH 199 (279)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 88888777777777776552 445555554
No 411
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.46 E-value=5.3e-07 Score=89.04 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=31.2
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 17 DGLNFSVAAGEKVALIGPSGSGKSTILRILMTL 49 (252)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 468899999999999999999999999999997
No 412
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.46 E-value=4.9e-07 Score=86.20 Aligned_cols=34 Identities=29% Similarity=0.307 Sum_probs=31.7
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|+++.+..++|+|++|||||||++.|++.
T Consensus 17 l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 17 LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578899999999999999999999999999997
No 413
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.45 E-value=3e-07 Score=92.76 Aligned_cols=34 Identities=32% Similarity=0.398 Sum_probs=31.8
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|++..+..++|+|++|||||||+++|++.
T Consensus 23 l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl 56 (287)
T PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNAL 56 (287)
T ss_pred eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578899999999999999999999999999997
No 414
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.45 E-value=4.9e-07 Score=86.44 Aligned_cols=33 Identities=30% Similarity=0.331 Sum_probs=31.2
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 24 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 24 KDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred eeEEEEECCCcEEEEECCCCCCHHHHHHHhccc
Confidence 578899999999999999999999999999997
No 415
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.45 E-value=4.3e-07 Score=87.61 Aligned_cols=33 Identities=18% Similarity=0.334 Sum_probs=30.8
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 4 ~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 4 DKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999999999997
No 416
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.45 E-value=5.2e-07 Score=88.82 Aligned_cols=33 Identities=30% Similarity=0.481 Sum_probs=31.2
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (247)
T TIGR00972 18 KNINLDIPKNQVTALIGPSGCGKSTLLRSLNRM 50 (247)
T ss_pred cceeEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 568899999999999999999999999999997
No 417
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.44 E-value=3.4e-07 Score=99.44 Aligned_cols=33 Identities=30% Similarity=0.345 Sum_probs=31.0
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 21 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~ 53 (501)
T PRK10762 21 SGAALNVYPGRVMALVGENGAGKSTMMKVLTGI 53 (501)
T ss_pred eeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 468899999999999999999999999999997
No 418
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.44 E-value=3.1e-07 Score=91.47 Aligned_cols=33 Identities=33% Similarity=0.445 Sum_probs=31.0
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 24 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 56 (265)
T PRK10253 24 ENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL 56 (265)
T ss_pred eecceEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 467899999999999999999999999999997
No 419
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=7.8e-07 Score=89.15 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=32.0
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|+++.+..++|+|++|||||||++.|++.
T Consensus 18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (274)
T PRK13644 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGL 51 (274)
T ss_pred eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999999999999999997
No 420
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=2.6e-07 Score=92.59 Aligned_cols=34 Identities=32% Similarity=0.335 Sum_probs=31.8
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|++..+..++|+|++|||||||++.|++.
T Consensus 21 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (274)
T PRK13647 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI 54 (274)
T ss_pred eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3578899999999999999999999999999997
No 421
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=3.8e-07 Score=91.50 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=31.9
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|++..+..++|+|++|||||||++.|++.
T Consensus 20 l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl 53 (277)
T PRK13652 20 LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGI 53 (277)
T ss_pred eeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578899999999999999999999999999997
No 422
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.43 E-value=7.4e-07 Score=89.55 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=31.8
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|++..+..++|+|++|||||||++.|++.
T Consensus 23 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (279)
T PRK13650 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL 56 (279)
T ss_pred eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3578899999999999999999999999999997
No 423
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.43 E-value=4.8e-07 Score=89.54 Aligned_cols=33 Identities=36% Similarity=0.461 Sum_probs=31.1
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|+++.+..++|+|++|||||||++.|++.
T Consensus 19 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (255)
T PRK11231 19 NDLSLSLPTGKITALIGPNGCGKSTLLKCFARL 51 (255)
T ss_pred eeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 468899999999999999999999999999997
No 424
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.43 E-value=4.8e-07 Score=88.63 Aligned_cols=34 Identities=35% Similarity=0.410 Sum_probs=31.7
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|++..+..++|+|++|||||||++.|++.
T Consensus 16 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578899999999999999999999999999997
No 425
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.43 E-value=1.2e-06 Score=92.46 Aligned_cols=150 Identities=17% Similarity=0.184 Sum_probs=82.9
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce-----------------EEe
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------------TVA 358 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~-----------------~l~ 358 (494)
-..++|++..+..++|+|++|||||||++.|++. +.|..|.+.+++..+ ++.
T Consensus 44 L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl-----------~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~ 112 (400)
T PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRL-----------IEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVF 112 (400)
T ss_pred EEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcC-----------CCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEE
Confidence 4678999999999999999999999999999997 334445554443211 222
Q ss_pred cCCCccCCcc--ccccchhhH-----HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEE
Q 011082 359 DIPGLIKGAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 431 (494)
Q Consensus 359 DtPGli~~a~--~~~~L~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlV 431 (494)
..+++..... ++..+...+ ....+.++-++-.+++.+..+......+..+.+.+. +..++...|.|++
T Consensus 113 Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~-----LArAL~~~P~iLL 187 (400)
T PRK10070 113 QSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVG-----LARALAINPDILL 187 (400)
T ss_pred CCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHH-----HHHHHhcCCCEEE
Confidence 3333332211 111111000 000112222333334433222222234444444443 3345667899998
Q ss_pred E----eCCCcCChHHHHHHHHHHc--CCCCEEEEEc
Q 011082 432 A----NKIDEDGAEEVYEELERRV--QGVPIYPVCA 461 (494)
Q Consensus 432 l----NKiDl~~~~e~~~~L~~~~--~~~~ii~ISA 461 (494)
+ +-+|......+.+.|.+.. .+..+|.+|+
T Consensus 188 LDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTH 223 (400)
T PRK10070 188 MDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISH 223 (400)
T ss_pred EECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 8 7888777777767666653 2455666664
No 426
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.43 E-value=6.5e-07 Score=85.87 Aligned_cols=34 Identities=32% Similarity=0.308 Sum_probs=31.5
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|+++.+..++|+|++|||||||++.|++.
T Consensus 18 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568899999999999999999999999999997
No 427
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.43 E-value=3.4e-07 Score=83.71 Aligned_cols=56 Identities=30% Similarity=0.488 Sum_probs=46.2
Q ss_pred ccceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCc
Q 011082 305 SIADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGL 363 (494)
Q Consensus 305 ~~~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGl 363 (494)
...+++++|.||+|||||+|+|++... .+++.++||..+....+ +..+.++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 346899999999999999999998753 67788999988776443 257999999996
No 428
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.43 E-value=5.6e-07 Score=89.34 Aligned_cols=34 Identities=38% Similarity=0.457 Sum_probs=31.5
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|++..+..++|+|++|||||||++.|++.
T Consensus 18 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 18 LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568899999999999999999999999999997
No 429
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.42 E-value=4.6e-07 Score=97.65 Aligned_cols=149 Identities=19% Similarity=0.185 Sum_probs=81.5
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCcc--ccccch
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAH--ENRGLG 374 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~--~~~~L~ 374 (494)
..++|++..+..++|+|++|||||||+++|+|. +.|..|.+.+++....+...+++..... ++..+.
T Consensus 41 ~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGL-----------l~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~ 109 (549)
T PRK13545 41 NNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGV-----------TMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELK 109 (549)
T ss_pred eeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhh
Confidence 467899999999999999999999999999997 4456677776663322222223322111 110000
Q ss_pred hh---H--HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eCCCcCChHHHHH
Q 011082 375 HA---F--LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVYE 445 (494)
Q Consensus 375 ~~---f--l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NKiDl~~~~e~~~ 445 (494)
.. + ....+.++.++-.+++.+..+......+..+.+.+. ++.++...|.++++ +-+|......+.+
T Consensus 110 ~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVa-----LArAL~~~P~LLLLDEPTsgLD~~sr~~Lle 184 (549)
T PRK13545 110 GLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLG-----FAISVHINPDILVIDEALSVGDQTFTKKCLD 184 (549)
T ss_pred hhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHH-----HHHHHHhCCCEEEEECCcccCCHHHHHHHHH
Confidence 00 0 000011122222223322111111234444444443 23355678999998 8888877777666
Q ss_pred HHHHHc-CCCCEEEEEc
Q 011082 446 ELERRV-QGVPIYPVCA 461 (494)
Q Consensus 446 ~L~~~~-~~~~ii~ISA 461 (494)
.|.+.. .+..++.+|+
T Consensus 185 lL~el~~~G~TIIIVSH 201 (549)
T PRK13545 185 KMNEFKEQGKTIFFISH 201 (549)
T ss_pred HHHHHHhCCCEEEEEEC
Confidence 666543 3445565554
No 430
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.42 E-value=1.3e-06 Score=79.83 Aligned_cols=92 Identities=14% Similarity=0.072 Sum_probs=61.2
Q ss_pred HHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHHHHHHHcCC--C
Q 011082 377 FLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQG--V 454 (494)
Q Consensus 377 fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~~L~~~~~~--~ 454 (494)
.++.++.+|++++|+|++.+.. .....+...+... -.++|.|+|+||+|+...++....+..+... .
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~--------~~~~~i~~~l~~~---~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~ 70 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMG--------TRCKHVEEYLKKE---KPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPT 70 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCcc--------ccCHHHHHHHHhc---cCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcE
Confidence 3567899999999999987421 1112233333221 1258999999999998765433333332211 2
Q ss_pred CEEEEEcccCCCHHHHHHHHHHHhc
Q 011082 455 PIYPVCAVLEEGVPELKVGLRMLVN 479 (494)
Q Consensus 455 ~ii~ISA~~g~gI~~L~~~I~~~l~ 479 (494)
.++++||+.+.|+++|.+.|..++.
T Consensus 71 ~~~~iSa~~~~~~~~L~~~l~~~~~ 95 (157)
T cd01858 71 IAFHASINNPFGKGSLIQLLRQFSK 95 (157)
T ss_pred EEEEeeccccccHHHHHHHHHHHHh
Confidence 2588999999999999999988764
No 431
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.42 E-value=1.1e-06 Score=91.30 Aligned_cols=149 Identities=20% Similarity=0.242 Sum_probs=79.8
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce-----------------EEec
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------------TVAD 359 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~-----------------~l~D 359 (494)
..++|++..+..++|+|++|||||||++.|++. +.|..|.+.+++..+ ++.+
T Consensus 15 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl-----------~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q 83 (352)
T PRK11144 15 LTVNLTLPAQGITAIFGRSGAGKTSLINAISGL-----------TRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQ 83 (352)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEccccccccccchhhCCEEEEcC
Confidence 478999999999999999999999999999997 233344444433111 1222
Q ss_pred CCCccCCccccccchhhHH-HHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eC
Q 011082 360 IPGLIKGAHENRGLGHAFL-RHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NK 434 (494)
Q Consensus 360 tPGli~~a~~~~~L~~~fl-~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NK 434 (494)
.+.+.........+...+. ...+.++.++-.+.+.+..+......+..+.+.+. +..++...|.++++ +-
T Consensus 84 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRva-----laraL~~~p~llLLDEPts~ 158 (352)
T PRK11144 84 DARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVA-----IGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred CcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHH-----HHHHHHcCCCEEEEcCCccc
Confidence 2333221110000100000 00112222222233332212122234444444443 33456678999998 77
Q ss_pred CCcCChHHHHHHHHHHcC--CCCEEEEEc
Q 011082 435 IDEDGAEEVYEELERRVQ--GVPIYPVCA 461 (494)
Q Consensus 435 iDl~~~~e~~~~L~~~~~--~~~ii~ISA 461 (494)
+|......+.+.|++... +.+++.+|+
T Consensus 159 LD~~~~~~l~~~L~~l~~~~g~tii~vTH 187 (352)
T PRK11144 159 LDLPRKRELLPYLERLAREINIPILYVSH 187 (352)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 887776766666666542 456776665
No 432
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.42 E-value=3.5e-07 Score=99.64 Aligned_cols=149 Identities=20% Similarity=0.247 Sum_probs=78.6
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce--------------EEecCCC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI--------------TVADIPG 362 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~--------------~l~DtPG 362 (494)
..++|++..+..++|+|++|||||||++.|++. +.|..|.+.+++..+ ++...+.
T Consensus 28 ~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 96 (510)
T PRK15439 28 KGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGI-----------VPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPL 96 (510)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCc
Confidence 478899999999999999999999999999997 334445554443211 1222222
Q ss_pred ccCCcc--ccccchhhHH-HHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eCC
Q 011082 363 LIKGAH--ENRGLGHAFL-RHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKI 435 (494)
Q Consensus 363 li~~a~--~~~~L~~~fl-~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NKi 435 (494)
+..... ++..+..... ..-+.+.-++-.+.+.+..+......+..+.+.+ .+..++...|.++++ +.+
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv-----~la~aL~~~p~lllLDEPt~~L 171 (510)
T PRK15439 97 LFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIV-----EILRGLMRDSRILILDEPTASL 171 (510)
T ss_pred cCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHH-----HHHHHHHcCCCEEEEECCCCCC
Confidence 222111 0000000000 0001111122222222211111112333444333 334456788999998 889
Q ss_pred CcCChHHHHHHHHHHc-CCCCEEEEEc
Q 011082 436 DEDGAEEVYEELERRV-QGVPIYPVCA 461 (494)
Q Consensus 436 Dl~~~~e~~~~L~~~~-~~~~ii~ISA 461 (494)
|......+.+.|.+.. .+..++.+|+
T Consensus 172 D~~~~~~l~~~l~~~~~~g~tiiivtH 198 (510)
T PRK15439 172 TPAETERLFSRIRELLAQGVGIVFISH 198 (510)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 9887777777776654 3445555553
No 433
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.42 E-value=8.9e-07 Score=92.69 Aligned_cols=149 Identities=20% Similarity=0.213 Sum_probs=83.4
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce-----------EEecCCCccC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGLIK 365 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~-----------~l~DtPGli~ 365 (494)
..++|++..+..++|+|++||||||||++|+|. +.|..|.+.+++..+ ++..-+.+..
T Consensus 31 ~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl-----------~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp 99 (375)
T PRK09452 31 SNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF-----------ETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFP 99 (375)
T ss_pred eeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECCEECCCCCHHHCCEEEEecCcccCC
Confidence 357899999999999999999999999999997 345556555554221 1112223322
Q ss_pred Ccc--ccccchhhH-----HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eC
Q 011082 366 GAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NK 434 (494)
Q Consensus 366 ~a~--~~~~L~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NK 434 (494)
... ++..++... ....++++.++-.+.+.+..+......+..+.+. ..+..+|...|.++++ +-
T Consensus 100 ~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QR-----VaLARaL~~~P~llLLDEP~s~ 174 (375)
T PRK09452 100 HMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQR-----VAIARAVVNKPKVLLLDESLSA 174 (375)
T ss_pred CCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHH-----HHHHHHHhcCCCEEEEeCCCCc
Confidence 111 111111100 0001122333333444332222122233444433 3344567789999997 77
Q ss_pred CCcCChHHHHHHHHHHcC--CCCEEEEEc
Q 011082 435 IDEDGAEEVYEELERRVQ--GVPIYPVCA 461 (494)
Q Consensus 435 iDl~~~~e~~~~L~~~~~--~~~ii~ISA 461 (494)
+|......+.+.|++... +.++|.||+
T Consensus 175 LD~~~r~~l~~~L~~l~~~~g~tiI~vTH 203 (375)
T PRK09452 175 LDYKLRKQMQNELKALQRKLGITFVFVTH 203 (375)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 887766666666666542 567777775
No 434
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.42 E-value=7.4e-07 Score=83.71 Aligned_cols=46 Identities=22% Similarity=0.400 Sum_probs=39.1
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCc
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI 353 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~ 353 (494)
..++++++.+..++|+|++|||||||++.|++. +.|..|.+.+++.
T Consensus 17 ~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~ 62 (182)
T cd03215 17 RDVSFEVRAGEIVGIAGLVGNGQTELAEALFGL-----------RPPASGEITLDGK 62 (182)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCE
Confidence 467889999999999999999999999999997 4566677776663
No 435
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.42 E-value=9.8e-07 Score=88.99 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=31.8
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|++..+..++|+|++|||||||++.|++.
T Consensus 23 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl 56 (286)
T PRK13646 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINAL 56 (286)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578899999999999999999999999999997
No 436
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.41 E-value=1.5e-06 Score=79.26 Aligned_cols=90 Identities=22% Similarity=0.218 Sum_probs=60.1
Q ss_pred HHHHHHh-hceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCCCcCChHHHHH--HHHHHcCC
Q 011082 377 FLRHIER-TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYE--ELERRVQG 453 (494)
Q Consensus 377 fl~~i~~-ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKiDl~~~~e~~~--~L~~~~~~ 453 (494)
.++|+.+ +|++++|+|++++... . ...+...+. ..++|.++|+||+|+........ .+.+. .+
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~~----~----~~~l~~~~~-----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~-~~ 70 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELT----R----SRKLERYVL-----ELGKKLLIVLNKADLVPKEVLEKWKSIKES-EG 70 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCccc----C----CHHHHHHHH-----hCCCcEEEEEEhHHhCCHHHHHHHHHHHHh-CC
Confidence 4566654 9999999998763210 1 112222221 13689999999999975433221 12222 34
Q ss_pred CCEEEEEcccCCCHHHHHHHHHHHhcc
Q 011082 454 VPIYPVCAVLEEGVPELKVGLRMLVNG 480 (494)
Q Consensus 454 ~~ii~ISA~~g~gI~~L~~~I~~~l~~ 480 (494)
.+++++||+++.|+++|++.|.+++..
T Consensus 71 ~~~~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 71 IPVVYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred CcEEEEEccccccHHHHHHHHHHHHhh
Confidence 679999999999999999999988754
No 437
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.41 E-value=7.8e-07 Score=91.06 Aligned_cols=151 Identities=21% Similarity=0.200 Sum_probs=81.1
Q ss_pred ceeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce-----------EEecCCCc
Q 011082 295 SESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGL 363 (494)
Q Consensus 295 e~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~-----------~l~DtPGl 363 (494)
--..++|+++.+..++|+||+||||||||+.|+|. ..|+.|.+.+++..+ .+....-+
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGL-----------e~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yAL 86 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL-----------EEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYAL 86 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEECCCCChhHCCEEEEeCCccc
Confidence 34568999999999999999999999999999998 455666666655211 22222223
Q ss_pred cCCcc--ccccchhhHH----HH-HHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----
Q 011082 364 IKGAH--ENRGLGHAFL----RH-IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA---- 432 (494)
Q Consensus 364 i~~a~--~~~~L~~~fl----~~-i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl---- 432 (494)
+...+ +|..++.... .. -++..-+.-++.+.+..+......+..+.+.+ +..+++..+|.++++
T Consensus 87 yPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRV-----AlaRAlVr~P~v~L~DEPl 161 (338)
T COG3839 87 YPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRV-----ALARALVRKPKVFLLDEPL 161 (338)
T ss_pred cCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHH-----HHHHHHhcCCCEEEecCch
Confidence 32211 1111111110 11 11222223333333332222233455555443 345577889999986
Q ss_pred eCCCcCChHHHHHHHHHHc--CCCCEEEEEc
Q 011082 433 NKIDEDGAEEVYEELERRV--QGVPIYPVCA 461 (494)
Q Consensus 433 NKiDl~~~~e~~~~L~~~~--~~~~ii~ISA 461 (494)
.-+|..-..+...+|++.. -+.+++.|++
T Consensus 162 SnLDa~lR~~mr~ei~~lh~~l~~T~IYVTH 192 (338)
T COG3839 162 SNLDAKLRVLMRSEIKKLHERLGTTTIYVTH 192 (338)
T ss_pred hHhhHHHHHHHHHHHHHHHHhcCCcEEEEcC
Confidence 3344433334444444432 2456777764
No 438
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.41 E-value=8.4e-07 Score=89.54 Aligned_cols=34 Identities=29% Similarity=0.437 Sum_probs=31.8
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|++..+..++|+|++|||||||++.|++.
T Consensus 23 l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl 56 (287)
T PRK13637 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGL 56 (287)
T ss_pred eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4578899999999999999999999999999997
No 439
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.41 E-value=1.1e-06 Score=92.13 Aligned_cols=150 Identities=18% Similarity=0.128 Sum_probs=83.3
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCc---------------------c
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI---------------------Q 354 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~---------------------~ 354 (494)
-..++|++..+..++|+|++|||||||+++|++. +.|+.|.+.+++. -
T Consensus 40 l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl-----------~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i 108 (382)
T TIGR03415 40 VANASLDIEEGEICVLMGLSGSGKSSLLRAVNGL-----------NPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRV 108 (382)
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCcEEEECCEecccccccCCHHHHHHHhcCCE
Confidence 4578999999999999999999999999999997 3344444444331 0
Q ss_pred eEEecCCCccCCcc--ccccchhhH-----HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCC
Q 011082 355 ITVADIPGLIKGAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP 427 (494)
Q Consensus 355 ~~l~DtPGli~~a~--~~~~L~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P 427 (494)
.++...++++.... ++..++..+ ......+.-++-.+.+.+..+......+..+.+. ..+..+|...|
T Consensus 109 ~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QR-----V~LARALa~~P 183 (382)
T TIGR03415 109 SMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQR-----VGLARAFAMDA 183 (382)
T ss_pred EEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH-----HHHHHHHhcCC
Confidence 12223344433211 111111100 0001222333333444332221112233333333 33445677899
Q ss_pred EEEEE----eCCCcCChHHHHHHHHHHcC--CCCEEEEEc
Q 011082 428 SLVVA----NKIDEDGAEEVYEELERRVQ--GVPIYPVCA 461 (494)
Q Consensus 428 ~IlVl----NKiDl~~~~e~~~~L~~~~~--~~~ii~ISA 461 (494)
.|+++ +-+|.....++.+.|.+... +..+++||+
T Consensus 184 ~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTH 223 (382)
T TIGR03415 184 DILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSH 223 (382)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 99998 77887777777676666542 456777775
No 440
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.41 E-value=1.1e-06 Score=85.34 Aligned_cols=153 Identities=18% Similarity=0.216 Sum_probs=85.7
Q ss_pred EEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccc------cc---ee---ecceeeEEee------c-C---cce
Q 011082 298 ELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHY------SF---TT---LRPNLGNMNF------D-D---IQI 355 (494)
Q Consensus 298 ~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~------~f---tT---l~p~~g~v~~------~-~---~~~ 355 (494)
.|++....+.+.+|+|+|||||||||+.+++..+..+.. +| .| +...+|.+.- . . ..+
T Consensus 49 ~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dv 128 (257)
T COG1119 49 DLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDV 128 (257)
T ss_pred ccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhccccccccee
Confidence 456677788899999999999999999999986543221 11 00 1111222110 0 0 111
Q ss_pred E---EecCCCccCCccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE
Q 011082 356 T---VADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 432 (494)
Q Consensus 356 ~---l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl 432 (494)
+ +.++.|++.. .+.. .....+..++-.+-+.+.. ..++..+..-...+..+.+++...|.++++
T Consensus 129 VlSg~~~siG~y~~-----~~~~---~~~~~a~~lle~~g~~~la-----~r~~~~LS~Ge~rrvLiaRALv~~P~LLiL 195 (257)
T COG1119 129 VLSGFFASIGIYQE-----DLTA---EDLAAAQWLLELLGAKHLA-----DRPFGSLSQGEQRRVLIARALVKDPELLIL 195 (257)
T ss_pred eeeccccccccccc-----CCCH---HHHHHHHHHHHHcchhhhc-----cCchhhcCHhHHHHHHHHHHHhcCCCEEEe
Confidence 1 1233333321 0110 1122222222222222211 134555555555555667788899999998
Q ss_pred ----eCCCcCChHHHHHHHHHHc---CCCCEEEEEccc
Q 011082 433 ----NKIDEDGAEEVYEELERRV---QGVPIYPVCAVL 463 (494)
Q Consensus 433 ----NKiDl~~~~e~~~~L~~~~---~~~~ii~ISA~~ 463 (494)
|.+|+...+...+.|.+.. +...+++||++.
T Consensus 196 DEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~ 233 (257)
T COG1119 196 DEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA 233 (257)
T ss_pred cCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch
Confidence 9999998888777777766 345678888753
No 441
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.41 E-value=2.3e-07 Score=90.29 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=31.1
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 17 RGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred cceeeEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999999999999997
No 442
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.41 E-value=5.7e-07 Score=87.74 Aligned_cols=33 Identities=30% Similarity=0.358 Sum_probs=30.7
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..+++.+..+..++|+|++|+|||||++.|++.
T Consensus 17 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 17 DGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 467788999999999999999999999999997
No 443
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.41 E-value=9.1e-07 Score=92.70 Aligned_cols=149 Identities=18% Similarity=0.216 Sum_probs=81.8
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce-----------EEecCCCccC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGLIK 365 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~-----------~l~DtPGli~ 365 (494)
..++|++..+..++|+|++||||||||++|++. ..|..|.+.+++..+ ++.+.+.++.
T Consensus 36 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp 104 (377)
T PRK11607 36 DDVSLTIYKGEIFALLGASGCGKSTLLRMLAGF-----------EQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFP 104 (377)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCC
Confidence 468899999999999999999999999999997 334455555554221 2223333333
Q ss_pred Ccc--ccccchhhH-----HHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eC
Q 011082 366 GAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NK 434 (494)
Q Consensus 366 ~a~--~~~~L~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NK 434 (494)
..+ +|..++... ....+++.-++-.+++.+..+......+..+.+.+ .+..+|...|.++++ +-
T Consensus 105 ~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRV-----aLARAL~~~P~lLLLDEP~s~ 179 (377)
T PRK11607 105 HMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRV-----ALARSLAKRPKLLLLDEPMGA 179 (377)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH-----HHHHHHhcCCCEEEEeCCccc
Confidence 211 111111000 00011222233333333322211122344444433 344567789999998 77
Q ss_pred CCcCChHHHHHHHHHHc--CCCCEEEEEc
Q 011082 435 IDEDGAEEVYEELERRV--QGVPIYPVCA 461 (494)
Q Consensus 435 iDl~~~~e~~~~L~~~~--~~~~ii~ISA 461 (494)
+|......+.+.|.+.. .+.+++.+|+
T Consensus 180 LD~~~r~~l~~~l~~l~~~~g~tii~vTH 208 (377)
T PRK11607 180 LDKKLRDRMQLEVVDILERVGVTCVMVTH 208 (377)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 88766666655555543 2456776664
No 444
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.40 E-value=4e-07 Score=88.15 Aligned_cols=33 Identities=33% Similarity=0.382 Sum_probs=31.1
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 25 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 25 KNVSLTVNAGECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999999999999997
No 445
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.40 E-value=2.7e-07 Score=92.26 Aligned_cols=33 Identities=36% Similarity=0.427 Sum_probs=30.9
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 18 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 18 KGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 467889999999999999999999999999997
No 446
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.40 E-value=1.6e-06 Score=80.53 Aligned_cols=46 Identities=33% Similarity=0.517 Sum_probs=38.7
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCc
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI 353 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~ 353 (494)
..++|++..+..++|+|++|+|||||++.|++. +.|..|.+.+++.
T Consensus 19 ~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~-----------~~~~~G~i~~~g~ 64 (171)
T cd03228 19 KDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL-----------YDPTSGEILIDGV 64 (171)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCCCEEEECCE
Confidence 467899999999999999999999999999997 3455677766653
No 447
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.39 E-value=1.5e-06 Score=83.80 Aligned_cols=45 Identities=31% Similarity=0.525 Sum_probs=39.8
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD 352 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~ 352 (494)
..|+|+++.+..|+|||++||||||||++|.+. .+|+.|.+.+++
T Consensus 21 ~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl-----------~d~t~G~i~~~g 65 (258)
T COG3638 21 KDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGL-----------VDPTSGEILFNG 65 (258)
T ss_pred eeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcc-----------cCCCcceEEecc
Confidence 478999999999999999999999999999986 667777777665
No 448
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.39 E-value=2.1e-06 Score=86.41 Aligned_cols=123 Identities=17% Similarity=0.299 Sum_probs=66.6
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCCCccc--cc--------ceeecceeeEEeecC--cceEEecCCCccCCcccccc---
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKPAVGH--YS--------FTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRG--- 372 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~~i~~--~~--------ftTl~p~~g~v~~~~--~~~~l~DtPGli~~a~~~~~--- 372 (494)
+|.++|.+|+|||||+|.|.+......+ ++ ..++......+.-++ ..+.++||||+.........
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~ 85 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWEP 85 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhHH
Confidence 6899999999999999999987443221 11 111222222232233 56899999999764332110
Q ss_pred ----chhhHHHHH-------------HhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEEeCC
Q 011082 373 ----LGHAFLRHI-------------ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKI 435 (494)
Q Consensus 373 ----L~~~fl~~i-------------~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVlNKi 435 (494)
+...|-.++ .+.|++||+++.+.. +..+ .++ ..+++|.. ..++|-|+.|.
T Consensus 86 I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-----~L~~-~Di-~~mk~Ls~------~vNvIPvIaKa 152 (281)
T PF00735_consen 86 IVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-----GLKP-LDI-EFMKRLSK------RVNVIPVIAKA 152 (281)
T ss_dssp HHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-----SS-H-HHH-HHHHHHTT------TSEEEEEESTG
T ss_pred HHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-----cchH-HHH-HHHHHhcc------cccEEeEEecc
Confidence 111222222 245899999997651 1111 122 34444432 46789999999
Q ss_pred CcCChHHH
Q 011082 436 DEDGAEEV 443 (494)
Q Consensus 436 Dl~~~~e~ 443 (494)
|....++.
T Consensus 153 D~lt~~el 160 (281)
T PF00735_consen 153 DTLTPEEL 160 (281)
T ss_dssp GGS-HHHH
T ss_pred cccCHHHH
Confidence 99987653
No 449
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.39 E-value=1.2e-06 Score=83.44 Aligned_cols=149 Identities=20% Similarity=0.212 Sum_probs=84.9
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEE--------------ecCCC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITV--------------ADIPG 362 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l--------------~DtPG 362 (494)
+.|+|++..+..|+|+|++||||||||++|.+. ..++.|.+.+++..+.. ..-..
T Consensus 19 kgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~L-----------E~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fn 87 (240)
T COG1126 19 KGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGL-----------EEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFN 87 (240)
T ss_pred cCcceeEcCCCEEEEECCCCCCHHHHHHHHHCC-----------cCCCCceEEECCEeccchhhHHHHHHhcCeeccccc
Confidence 467889999999999999999999999999987 34566666666632211 11111
Q ss_pred ccCCcc--ccccchh------hHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE--
Q 011082 363 LIKGAH--ENRGLGH------AFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA-- 432 (494)
Q Consensus 363 li~~a~--~~~~L~~------~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl-- 432 (494)
++.... +|.-+.. .--+.-+.|--+|--+.+.+..+..+...+..+.+.+ +++++|...|.++++
T Consensus 88 LFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRV-----AIARALaM~P~vmLFDE 162 (240)
T COG1126 88 LFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRV-----AIARALAMDPKVMLFDE 162 (240)
T ss_pred ccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHH-----HHHHHHcCCCCEEeecC
Confidence 111000 0000000 0011223344455555555544433344555555544 345577889999987
Q ss_pred --eCCCcCChHHHHHHHHHHc-CCCCEEEEEc
Q 011082 433 --NKIDEDGAEEVYEELERRV-QGVPIYPVCA 461 (494)
Q Consensus 433 --NKiDl~~~~e~~~~L~~~~-~~~~ii~ISA 461 (494)
+-+|..-..+.++.+++.. .+.+.+.|++
T Consensus 163 PTSALDPElv~EVL~vm~~LA~eGmTMivVTH 194 (240)
T COG1126 163 PTSALDPELVGEVLDVMKDLAEEGMTMIIVTH 194 (240)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 5556544456666555554 4566666654
No 450
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=1.2e-06 Score=88.24 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=31.7
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|++..+..++|+|++|||||||++.|++.
T Consensus 22 l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl 55 (283)
T PRK13636 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGI 55 (283)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3578899999999999999999999999999997
No 451
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.38 E-value=1.1e-06 Score=86.95 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=31.3
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..|+|+|++|||||||++.|++.
T Consensus 22 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 54 (257)
T PRK10619 22 KGVSLQANAGDVISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 568899999999999999999999999999997
No 452
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.38 E-value=1.6e-06 Score=86.52 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=31.3
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 26 ~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 26 KDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 578899999999999999999999999999997
No 453
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.38 E-value=8.6e-07 Score=88.88 Aligned_cols=34 Identities=26% Similarity=0.232 Sum_probs=31.9
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|++..+..++|+|++|||||||+++|++.
T Consensus 18 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 51 (275)
T PRK13639 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGI 51 (275)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578899999999999999999999999999997
No 454
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.38 E-value=3e-06 Score=79.25 Aligned_cols=128 Identities=17% Similarity=0.215 Sum_probs=74.8
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEe-----cCCCccCCcccc
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVA-----DIPGLIKGAHEN 370 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~-----DtPGli~~a~~~ 370 (494)
-..++|++..+..++|+|++|||||||++.|++. ..|..|.+.+++..+.-. .-.++.. +.
T Consensus 18 l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~---q~ 83 (178)
T cd03247 18 LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGD-----------LKPQQGEITLDGVPVSDLEKALSSLISVLN---QR 83 (178)
T ss_pred eEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------CCCCCCEEEECCEEHHHHHHHHHhhEEEEc---cC
Confidence 4578999999999999999999999999999997 345566666665321000 0000000 00
Q ss_pred ccch-hhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eCCCcCChHHHHH
Q 011082 371 RGLG-HAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVYE 445 (494)
Q Consensus 371 ~~L~-~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NKiDl~~~~e~~~ 445 (494)
..+. ....+.+ +. ..+..+.+.+. +..++...|.++++ +-+|....+.+.+
T Consensus 84 ~~~~~~tv~~~i--------~~-----------~LS~G~~qrv~-----laral~~~p~~lllDEP~~~LD~~~~~~l~~ 139 (178)
T cd03247 84 PYLFDTTLRNNL--------GR-----------RFSGGERQRLA-----LARILLQDAPIVLLDEPTVGLDPITERQLLS 139 (178)
T ss_pred CeeecccHHHhh--------cc-----------cCCHHHHHHHH-----HHHHHhcCCCEEEEECCcccCCHHHHHHHHH
Confidence 0000 0000000 00 12334433332 23456688999998 7888877777777
Q ss_pred HHHHHcCCCCEEEEEc
Q 011082 446 ELERRVQGVPIYPVCA 461 (494)
Q Consensus 446 ~L~~~~~~~~ii~ISA 461 (494)
.+.+...+..++.+|+
T Consensus 140 ~l~~~~~~~tii~~sh 155 (178)
T cd03247 140 LIFEVLKDKTLIWITH 155 (178)
T ss_pred HHHHHcCCCEEEEEec
Confidence 7776654555666664
No 455
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.37 E-value=5.2e-07 Score=98.23 Aligned_cols=33 Identities=30% Similarity=0.298 Sum_probs=31.3
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 22 ~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl 54 (510)
T PRK09700 22 KSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI 54 (510)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 578999999999999999999999999999997
No 456
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.37 E-value=2.1e-06 Score=84.55 Aligned_cols=33 Identities=33% Similarity=0.427 Sum_probs=31.0
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|+++.+..++|+|++|||||||++.|+|.
T Consensus 20 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 20 DGVNLEIPDNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 467889999999999999999999999999997
No 457
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.37 E-value=6.3e-07 Score=87.97 Aligned_cols=33 Identities=33% Similarity=0.438 Sum_probs=31.1
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 20 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 20 KDISVKFEGGAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 578899999999999999999999999999997
No 458
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.37 E-value=1.4e-06 Score=83.18 Aligned_cols=46 Identities=28% Similarity=0.339 Sum_probs=38.5
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD 352 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~ 352 (494)
-..++|+++.+..++|+|++|||||||++.|++. ..|..|.+.+++
T Consensus 21 l~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~-----------~~~~~G~i~~~g 66 (204)
T cd03250 21 LKDINLEVPKGELVAIVGPVGSGKSSLLSALLGE-----------LEKLSGSVSVPG 66 (204)
T ss_pred eeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCc-----------CCCCCCeEEEcC
Confidence 3478899999999999999999999999999997 345566666655
No 459
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.37 E-value=2.4e-06 Score=77.37 Aligned_cols=46 Identities=35% Similarity=0.533 Sum_probs=39.8
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD 352 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~ 352 (494)
-..++|+++.+..++|+|++|+|||||+++|++. +.|..|.+.+++
T Consensus 16 l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~-----------~~~~~G~i~~~~ 61 (144)
T cd03221 16 LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGE-----------LEPDEGIVTWGS 61 (144)
T ss_pred EEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCC-----------CCCCceEEEECC
Confidence 4578899999999999999999999999999997 456778777765
No 460
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.37 E-value=1.3e-06 Score=87.64 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=31.9
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|++..+..++|+|++|||||||++.|++.
T Consensus 23 l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 56 (277)
T PRK13642 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGL 56 (277)
T ss_pred eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4578999999999999999999999999999997
No 461
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.37 E-value=1.5e-06 Score=87.76 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=31.9
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|+++.+..++|+|++|||||||++.|++.
T Consensus 23 L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (290)
T PRK13634 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGL 56 (290)
T ss_pred eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3578999999999999999999999999999997
No 462
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.37 E-value=4.1e-07 Score=93.35 Aligned_cols=56 Identities=34% Similarity=0.424 Sum_probs=46.1
Q ss_pred ceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccC
Q 011082 307 ADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIK 365 (494)
Q Consensus 307 ~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~ 365 (494)
.+|++||+||+|||||||+|.+.+. .++++|++|...+.-.+ . ..+.++||||++.
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~--~-~~i~LlDtPGii~ 189 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKL--D-DGIYLLDTPGIIP 189 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEc--C-CCeEEecCCCcCC
Confidence 4699999999999999999999865 67999999876554333 2 3589999999986
No 463
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.37 E-value=5.1e-07 Score=88.26 Aligned_cols=34 Identities=35% Similarity=0.474 Sum_probs=31.5
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|++..+..++|+|++|||||||+++|++.
T Consensus 21 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (237)
T PRK11614 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGD 54 (237)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 3568899999999999999999999999999997
No 464
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.36 E-value=1.8e-06 Score=86.35 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=31.4
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|++..+..++|+|++|||||||++.|++.
T Consensus 29 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 29 VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred EcceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3468899999999999999999999999999997
No 465
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.35 E-value=1.2e-06 Score=83.19 Aligned_cols=130 Identities=18% Similarity=0.107 Sum_probs=74.9
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceE----------EecCCCccC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQIT----------VADIPGLIK 365 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~----------l~DtPGli~ 365 (494)
-..++|++..+..++|+|++|+|||||++.|++..+ -.|..|.+.+++..+. +.+.+.+..
T Consensus 25 l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~---------~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~ 95 (194)
T cd03213 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRT---------GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHP 95 (194)
T ss_pred eecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---------CCCCceEEEECCEeCchHhhhheEEEccCcccCCC
Confidence 346788999999999999999999999999999721 0456677766653321 112222211
Q ss_pred CccccccchhhHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eCCCcCChH
Q 011082 366 GAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAE 441 (494)
Q Consensus 366 ~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NKiDl~~~~ 441 (494)
. ......+..... +. . .+..+.+.+. +..++...|.++++ +-+|....+
T Consensus 96 ~--------~t~~~~i~~~~~-~~--~-----------LS~G~~qrv~-----laral~~~p~illlDEP~~~LD~~~~~ 148 (194)
T cd03213 96 T--------LTVRETLMFAAK-LR--G-----------LSGGERKRVS-----IALELVSNPSLLFLDEPTSGLDSSSAL 148 (194)
T ss_pred C--------CcHHHHHHHHHH-hc--c-----------CCHHHHHHHH-----HHHHHHcCCCEEEEeCCCcCCCHHHHH
Confidence 0 011111111000 00 1 2334443332 23355678888888 788877777
Q ss_pred HHHHHHHHHc-CCCCEEEEEc
Q 011082 442 EVYEELERRV-QGVPIYPVCA 461 (494)
Q Consensus 442 e~~~~L~~~~-~~~~ii~ISA 461 (494)
...+.|.+.. .+..++.+|+
T Consensus 149 ~l~~~l~~~~~~~~tiii~sh 169 (194)
T cd03213 149 QVMSLLRRLADTGRTIICSIH 169 (194)
T ss_pred HHHHHHHHHHhCCCEEEEEec
Confidence 7777776654 2445555554
No 466
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.35 E-value=5.7e-07 Score=91.64 Aligned_cols=34 Identities=15% Similarity=0.339 Sum_probs=31.8
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|++..+..|+|+|++|||||||++.|+|.
T Consensus 23 l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl 56 (305)
T PRK13651 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL 56 (305)
T ss_pred eeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3578999999999999999999999999999997
No 467
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.35 E-value=7.1e-07 Score=90.14 Aligned_cols=58 Identities=22% Similarity=0.388 Sum_probs=47.8
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCccCC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKG 366 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~ 366 (494)
..+|+++|.||+|||||+|+|++.+. .+++.|++|...+. +..+ ..+.++||||+...
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~~-~~~~l~DtPGi~~~ 179 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQW--IKLG-KGLELLDTPGILWP 179 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEE--EEeC-CcEEEEECCCcCCC
Confidence 34799999999999999999999865 78899999987653 3333 46899999999764
No 468
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.35 E-value=1.2e-06 Score=85.77 Aligned_cols=34 Identities=26% Similarity=0.294 Sum_probs=31.8
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|++..+..++|+|++|||||||++.|++.
T Consensus 15 l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~ 48 (235)
T cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGF 48 (235)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4578899999999999999999999999999997
No 469
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.34 E-value=1.2e-06 Score=82.50 Aligned_cols=87 Identities=26% Similarity=0.344 Sum_probs=56.9
Q ss_pred EEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC-------------------------
Q 011082 298 ELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD------------------------- 352 (494)
Q Consensus 298 ~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~------------------------- 352 (494)
.+++++..+..-++|||+||||||||+.+++. +....|.+.+++
T Consensus 19 ~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL-----------~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~ 87 (252)
T COG4604 19 DVSLDIPKGGITSIIGPNGAGKSTLLSMMSRL-----------LKKDSGEITIDGLELTSTPSKELAKKLSILKQENHIN 87 (252)
T ss_pred cceeeecCCceeEEECCCCccHHHHHHHHHHh-----------ccccCceEEEeeeecccCChHHHHHHHHHHHhhchhh
Confidence 56788899999999999999999999999876 222333333322
Q ss_pred cceEEecCCCccCCccccccchhhHHHHHHhhceeeEEEecCC
Q 011082 353 IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLAS 395 (494)
Q Consensus 353 ~~~~l~DtPGli~~a~~~~~L~~~fl~~i~~ad~ll~VvD~s~ 395 (494)
.++++-|..+|.+.....-.+...=..++..|=-.+.+-|+.+
T Consensus 88 ~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~d 130 (252)
T COG4604 88 SRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSD 130 (252)
T ss_pred heeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHH
Confidence 3578888888877544322244444455555544445445443
No 470
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.34 E-value=1.9e-06 Score=85.06 Aligned_cols=34 Identities=29% Similarity=0.356 Sum_probs=31.4
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|++..+..++|+|++|||||||++.|++.
T Consensus 20 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 20 IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3567899999999999999999999999999997
No 471
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.34 E-value=6.8e-07 Score=89.74 Aligned_cols=58 Identities=26% Similarity=0.389 Sum_probs=47.3
Q ss_pred cceeeeeCCCCCcHHHHHHHHHcCC-CCcccccceeecceeeEEeecCcceEEecCCCccCC
Q 011082 306 IADVGLVGMPSAGKSTLLGAISRAK-PAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKG 366 (494)
Q Consensus 306 ~~~V~LVG~~nAGKSTLLn~Lt~~~-~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~ 366 (494)
..+|++||.||+|||||+|+|++.+ ..+++.+++|..++ .+.++ ..+.++||||+...
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~-~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQ--WIKLS-DGLELLDTPGILWP 176 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceE--EEEeC-CCEEEEECCCcccC
Confidence 3479999999999999999999875 46788999998765 34443 46899999999763
No 472
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.34 E-value=2.3e-06 Score=78.21 Aligned_cols=119 Identities=29% Similarity=0.362 Sum_probs=73.3
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchh
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGH 375 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~ 375 (494)
-..+++++..+..++|+|++|+|||||+++|++. +.+..|.+.+++..+.-. .
T Consensus 15 l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~-----------~~~~~G~i~~~~~~~~~~------~---------- 67 (157)
T cd00267 15 LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGL-----------LKPTSGEILIDGKDIAKL------P---------- 67 (157)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCccEEEECCEEcccC------C----------
Confidence 3467889999999999999999999999999997 456677777766322110 0
Q ss_pred hHHHHHHhhceeeEEEecCCCCCCCCCCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eCCCcCChHHHHHHHHHHc
Q 011082 376 AFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVYEELERRV 451 (494)
Q Consensus 376 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NKiDl~~~~e~~~~L~~~~ 451 (494)
.......+.++..++. .+.+.+.. ...+...|.++++ +.+|........+.+.+..
T Consensus 68 ----~~~~~~~i~~~~qlS~-----------G~~~r~~l-----~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~ 127 (157)
T cd00267 68 ----LEELRRRIGYVPQLSG-----------GQRQRVAL-----ARALLLNPDLLLLDEPTSGLDPASRERLLELLRELA 127 (157)
T ss_pred ----HHHHHhceEEEeeCCH-----------HHHHHHHH-----HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 0011223444444443 33333322 2234466888887 7788776666666666554
Q ss_pred C-CCCEEEEEc
Q 011082 452 Q-GVPIYPVCA 461 (494)
Q Consensus 452 ~-~~~ii~ISA 461 (494)
. +..++.+|+
T Consensus 128 ~~~~tii~~sh 138 (157)
T cd00267 128 EEGRTVIIVTH 138 (157)
T ss_pred HCCCEEEEEeC
Confidence 3 234554443
No 473
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.34 E-value=2.5e-06 Score=85.40 Aligned_cols=33 Identities=27% Similarity=0.330 Sum_probs=31.3
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 24 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 24 RDASFTVPGGSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 578899999999999999999999999999997
No 474
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.34 E-value=1e-06 Score=96.26 Aligned_cols=151 Identities=21% Similarity=0.315 Sum_probs=84.7
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcce------------EEecCCCc
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI------------TVADIPGL 363 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~------------~l~DtPGl 363 (494)
=..++|+++.+..|+|||++|||||||++.|++. .+|+.|.+.+++.++ ++...|-+
T Consensus 351 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~-----------~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~l 419 (529)
T TIGR02868 351 LDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGL-----------LDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHL 419 (529)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEEhhhHHHHHHhheEEEccCccc
Confidence 3578999999999999999999999999999997 456666666655211 11111111
Q ss_pred cCC-ccccccch------hhHHHHHHhhceeeEEEecCCCCCCCC----CCCCHHHHHHHHHHHHhhhcccCCCCEEEEE
Q 011082 364 IKG-AHENRGLG------HAFLRHIERTKVLAYVVDLASGLDGRK----GIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 432 (494)
Q Consensus 364 i~~-a~~~~~L~------~~fl~~i~~ad~ll~VvD~s~~~~~~~----~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl 432 (494)
..+ ..+|..++ ....+.++.+.+-=++-...+..+... ...+..+.+.+ .+++++..+|.|+++
T Consensus 420 F~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRi-----aiARall~~~~iliL 494 (529)
T TIGR02868 420 FDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRL-----ALARALLADAPILLL 494 (529)
T ss_pred ccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHH-----HHHHHHhcCCCEEEE
Confidence 111 11111111 122233333322111111111111100 12344555544 334566788888887
Q ss_pred ----eCCCcCChHHHHHHHHHHcCCCCEEEEEcc
Q 011082 433 ----NKIDEDGAEEVYEELERRVQGVPIYPVCAV 462 (494)
Q Consensus 433 ----NKiDl~~~~e~~~~L~~~~~~~~ii~ISA~ 462 (494)
.-+|......+.+.+.+..++.+++.||+.
T Consensus 495 DE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr 528 (529)
T TIGR02868 495 DEPTEHLDAGTESELLEDLLAALSGKTVVVITHH 528 (529)
T ss_pred eCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 667776666777777776667778887753
No 475
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.33 E-value=3.6e-06 Score=78.40 Aligned_cols=130 Identities=18% Similarity=0.291 Sum_probs=74.6
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCcceEEecCCCccCCccccccchh
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGH 375 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli~~a~~~~~L~~ 375 (494)
-..+++++..+..++|+|++|+|||||++.|++. +.|..|.+.+++..+. +.+ .
T Consensus 18 l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~-----------~~~~~G~i~~~g~~~~--~~~---~---------- 71 (173)
T cd03246 18 LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGL-----------LRPTSGRVRLDGADIS--QWD---P---------- 71 (173)
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhc-----------cCCCCCeEEECCEEcc--cCC---H----------
Confidence 3567899999999999999999999999999997 4466677777653221 100 0
Q ss_pred hHHHHHHhhceeeEEEecCCCCCCCC--CCCCHHHHHHHHHHHHhhhcccCCCCEEEEE----eCCCcCChHHHHHHHHH
Q 011082 376 AFLRHIERTKVLAYVVDLASGLDGRK--GIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVYEELER 449 (494)
Q Consensus 376 ~fl~~i~~ad~ll~VvD~s~~~~~~~--~~~~~~~~~~l~~eL~~~~~~l~~~P~IlVl----NKiDl~~~~e~~~~L~~ 449 (494)
..+. ..+.++..-........ ...+..+.+.+ .+..++...|.++++ +.+|......+.+.+.+
T Consensus 72 ---~~~~--~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv-----~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~ 141 (173)
T cd03246 72 ---NELG--DHVGYLPQDDELFSGSIAENILSGGQRQRL-----GLARALYGNPRILVLDEPNSHLDVEGERALNQAIAA 141 (173)
T ss_pred ---HHHH--hheEEECCCCccccCcHHHHCcCHHHHHHH-----HHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHH
Confidence 0000 01122211100000000 00122222322 233456688999988 78888777777777766
Q ss_pred Hc-CCCCEEEEEc
Q 011082 450 RV-QGVPIYPVCA 461 (494)
Q Consensus 450 ~~-~~~~ii~ISA 461 (494)
.. .+..++.+|+
T Consensus 142 ~~~~~~tii~~sh 154 (173)
T cd03246 142 LKAAGATRIVIAH 154 (173)
T ss_pred HHhCCCEEEEEeC
Confidence 54 3445665554
No 476
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.32 E-value=8.5e-07 Score=79.77 Aligned_cols=54 Identities=35% Similarity=0.536 Sum_probs=42.7
Q ss_pred eeeeeCCCCCcHHHHHHHHHcCCC-CcccccceeecceeeEEeecCcceEEecCCCcc
Q 011082 308 DVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLI 364 (494)
Q Consensus 308 ~V~LVG~~nAGKSTLLn~Lt~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~l~DtPGli 364 (494)
+++++|.+|+|||||+|+|++... .++..+.+|.+... +.+++ .+.++||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQT--IFLTP-TITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEE--EEeCC-CEEEEECCCcC
Confidence 799999999999999999998754 56667777765443 44443 68999999985
No 477
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.32 E-value=7e-07 Score=90.16 Aligned_cols=34 Identities=32% Similarity=0.387 Sum_probs=31.9
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|++..+..|+|+|++|||||||++.|++.
T Consensus 22 l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl 55 (288)
T PRK13643 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGL 55 (288)
T ss_pred eeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcC
Confidence 3578999999999999999999999999999997
No 478
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.32 E-value=6.8e-07 Score=86.58 Aligned_cols=33 Identities=36% Similarity=0.483 Sum_probs=30.8
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 22 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 22 DDVSFSIKKGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred cCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 467889999999999999999999999999997
No 479
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.32 E-value=8.5e-07 Score=96.09 Aligned_cols=33 Identities=30% Similarity=0.368 Sum_probs=31.1
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 15 ~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 47 (491)
T PRK10982 15 DNVNLKVRPHSIHALMGENGAGKSTLLKCLFGI 47 (491)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 468899999999999999999999999999997
No 480
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.32 E-value=9.1e-07 Score=88.15 Aligned_cols=33 Identities=30% Similarity=0.424 Sum_probs=30.9
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 28 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T TIGR02769 28 TNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL 60 (265)
T ss_pred eCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 467889999999999999999999999999997
No 481
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.32 E-value=1.6e-06 Score=84.10 Aligned_cols=33 Identities=33% Similarity=0.489 Sum_probs=30.6
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 24 ~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~ 56 (226)
T cd03234 24 NDVSLHVESGQVMAILGSSGSGKTTLLDAISGR 56 (226)
T ss_pred cCceEEEcCCeEEEEECCCCCCHHHHHHHHhCc
Confidence 457889999999999999999999999999997
No 482
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.32 E-value=1.1e-06 Score=82.58 Aligned_cols=42 Identities=31% Similarity=0.396 Sum_probs=36.3
Q ss_pred EEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecCc
Q 011082 301 LELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI 353 (494)
Q Consensus 301 lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~~ 353 (494)
++++.+..++|+|++|||||||++.|++. +.|..|.+.+++.
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~ 61 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQ-----------LIPNGDNDEWDGI 61 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcC-----------CCCCCcEEEECCE
Confidence 57788889999999999999999999997 5577788887764
No 483
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.31 E-value=2.3e-06 Score=88.26 Aligned_cols=33 Identities=33% Similarity=0.396 Sum_probs=31.3
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|+++.+..++|+|++|||||||+++|++.
T Consensus 38 ~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl 70 (331)
T PRK15079 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGL 70 (331)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 468999999999999999999999999999997
No 484
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.31 E-value=1.6e-06 Score=92.57 Aligned_cols=45 Identities=29% Similarity=0.409 Sum_probs=39.2
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCCCCcccccceeecceeeEEeecC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD 352 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~~~i~~~~ftTl~p~~g~v~~~~ 352 (494)
..++|++..+..++|+|.||||||||++.|+|. ..|+.|.+.+++
T Consensus 25 ~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv-----------~~p~~G~I~~~G 69 (500)
T COG1129 25 DGVSLTVRPGEVHALLGENGAGKSTLMKILSGV-----------YPPDSGEILIDG 69 (500)
T ss_pred ccceeEEeCceEEEEecCCCCCHHHHHHHHhCc-----------ccCCCceEEECC
Confidence 468899999999999999999999999999997 456677777766
No 485
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.31 E-value=1.7e-06 Score=85.72 Aligned_cols=34 Identities=32% Similarity=0.477 Sum_probs=31.7
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|+++.+..++|+|++|||||||++.|++.
T Consensus 22 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred eeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3578899999999999999999999999999997
No 486
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.31 E-value=1.4e-06 Score=87.36 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=31.2
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|+++.+..++|+|++|||||||++.|++.
T Consensus 24 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 24 FDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 568899999999999999999999999999997
No 487
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.31 E-value=3.6e-06 Score=83.48 Aligned_cols=33 Identities=24% Similarity=0.463 Sum_probs=31.0
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 21 EDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 468899999999999999999999999999997
No 488
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.31 E-value=2.6e-06 Score=84.61 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=31.0
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|+++.+..++|+|++|||||||++.|++.
T Consensus 30 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 30 KNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 467899999999999999999999999999987
No 489
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.30 E-value=9.1e-07 Score=96.12 Aligned_cols=33 Identities=30% Similarity=0.390 Sum_probs=31.3
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 21 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 53 (501)
T PRK11288 21 DDISFDCRAGQVHALMGENGAGKSTLLKILSGN 53 (501)
T ss_pred eeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 578899999999999999999999999999997
No 490
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.30 E-value=6.4e-07 Score=89.37 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=31.1
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|+++.+..++|+|++|||||||++.|++.
T Consensus 30 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl 62 (267)
T PRK15112 30 KPLSFTLREGQTLAIIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred eeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 467899999999999999999999999999997
No 491
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.30 E-value=1.5e-06 Score=94.66 Aligned_cols=34 Identities=12% Similarity=0.309 Sum_probs=31.8
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|++..+..++|+|++|||||||++.|++.
T Consensus 279 l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 312 (510)
T PRK09700 279 VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGV 312 (510)
T ss_pred ccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999999999999999997
No 492
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.30 E-value=1.4e-06 Score=94.80 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=31.8
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|++..+..++|+|++|||||||++.|++.
T Consensus 269 l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~ 302 (501)
T PRK11288 269 REPISFSVRAGEIVGLFGLVGAGRSELMKLLYGA 302 (501)
T ss_pred ccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCC
Confidence 3578899999999999999999999999999997
No 493
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.30 E-value=4.3e-06 Score=83.42 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=31.1
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|+++.+..++|+|++|||||||++.|+|.
T Consensus 36 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 68 (267)
T PRK14235 36 FDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRM 68 (267)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 568899999999999999999999999999997
No 494
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.30 E-value=1.4e-06 Score=84.33 Aligned_cols=33 Identities=33% Similarity=0.344 Sum_probs=30.9
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|.+..+..++|+|++|||||||++.|++.
T Consensus 22 ~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~ 54 (220)
T TIGR02982 22 FDINLEINPGEIVILTGPSGSGKTTLLTLIGGL 54 (220)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 467889999999999999999999999999997
No 495
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.29 E-value=3e-06 Score=83.60 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=30.9
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|+|.
T Consensus 21 ~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14251 21 HGISLDFEEKELTALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 468899999999999999999999999999997
No 496
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.29 E-value=2.3e-06 Score=85.02 Aligned_cols=34 Identities=32% Similarity=0.350 Sum_probs=31.3
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAK 330 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~ 330 (494)
..++|++..+..++|+|++|||||||++.|++..
T Consensus 21 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (262)
T PRK09984 21 HAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred ecceEEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 4678899999999999999999999999999973
No 497
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.29 E-value=2.6e-06 Score=85.87 Aligned_cols=33 Identities=24% Similarity=0.466 Sum_probs=31.1
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 56 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 88 (285)
T PRK14254 56 DDVSMDIPENQVTAMIGPSGCGKSTFLRCINRM 88 (285)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 568899999999999999999999999999997
No 498
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.29 E-value=1.3e-06 Score=84.85 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=31.4
Q ss_pred eeEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 296 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 296 ~~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
-..++|++..+..++|+|++|||||||++.|++.
T Consensus 23 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 23 LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3568899999999999999999999999999997
No 499
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.29 E-value=1.1e-06 Score=95.48 Aligned_cols=33 Identities=33% Similarity=0.431 Sum_probs=31.0
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 329 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~ 329 (494)
..++|++..+..++|+|++|||||||++.|++.
T Consensus 22 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (506)
T PRK13549 22 DNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGV 54 (506)
T ss_pred cceeEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 468899999999999999999999999999997
No 500
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.28 E-value=1.7e-06 Score=85.34 Aligned_cols=34 Identities=32% Similarity=0.520 Sum_probs=31.5
Q ss_pred eEEEEEeeccceeeeeCCCCCcHHHHHHHHHcCC
Q 011082 297 SELILELKSIADVGLVGMPSAGKSTLLGAISRAK 330 (494)
Q Consensus 297 ~~i~lelk~~~~V~LVG~~nAGKSTLLn~Lt~~~ 330 (494)
..++|++..+..++|+|++|||||||++.|++..
T Consensus 20 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678999999999999999999999999999983
Done!